Citrus Sinensis ID: 045363
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 712 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.981 | 0.933 | 0.537 | 0.0 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.953 | 0.928 | 0.474 | 1e-178 | |
| O65351 | 757 | Subtilisin-like protease | no | no | 0.919 | 0.865 | 0.434 | 1e-142 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.921 | 0.846 | 0.375 | 1e-121 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.683 | 0.604 | 0.255 | 1e-22 | |
| Q8NZ80 | 1150 | C5a peptidase OS=Streptoc | N/A | no | 0.502 | 0.311 | 0.244 | 1e-12 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.502 | 0.302 | 0.244 | 1e-12 | |
| P58099 | 1181 | C5a peptidase OS=Streptoc | N/A | no | 0.502 | 0.303 | 0.244 | 3e-12 | |
| P15926 | 1167 | C5a peptidase OS=Streptoc | yes | no | 0.502 | 0.306 | 0.242 | 4e-12 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | yes | no | 0.507 | 0.308 | 0.239 | 3e-11 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/709 (53%), Positives = 487/709 (68%), Gaps = 10/709 (1%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSEE 60
+G+ P+ +K H +LL++ ++ A+E K+ SY K+FN F A+L PHEAK++ E
Sbjct: 42 LGDRPDNTE-ETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKMMEM 100
Query: 61 ESVVSVFENTRRKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKG 120
E VVSV N RKLHTT++WDF+G+ KR KA+ ++I+G+LDTGI +S SF D G
Sbjct: 101 EEVVSVSRNQYRKLHTTKSWDFVGL-PLTAKRHLKAERDVIIGVLDTGITPDSESFLDHG 159
Query: 121 FGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTA 180
GPPPAKWKG C NFT CN K+IGA+Y+ D + P + +SP+D DGHGTHTSST
Sbjct: 160 LGPPPAKWKGSCGPYKNFTGCNNKIIGAKYFKHDGNV-PAGEVRSPIDIDGHGTHTSSTV 218
Query: 181 AGETVKGASLYGIAQGTARGGVPSARIAMYKVCWS-GGCADMDILAAFDDAIGDGVDLIS 239
AG V ASLYGIA GTARG VPSAR+AMYKVCW+ GCADMDILA F+ AI DGV++IS
Sbjct: 219 AGVLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEIIS 278
Query: 240 ISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDR 299
ISIGGP Y DSIS+GSFHAM+KGILT SAGNDGP GTV N PWI+TVAAS IDR
Sbjct: 279 ISIGGPIADYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDR 338
Query: 300 KFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKK 359
F + + LGNG SG+ I+ FSP+ YPL +G AA T + Y C +L KK
Sbjct: 339 TFKSKIDLGNGKSFSGMGISMFSPKAKSYPLVSGVDAAKNTDDKY-LARYCFSDSLDRKK 397
Query: 360 VKGKIVYC-LGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYI 418
VKGK++ C +G G + TI GAG I+ D D A + T V VG I +YI
Sbjct: 398 VKGKVMVCRMGGGGVESTIKSYGGAGAIIVSDQYLDNAQIFMAPATSVNSSVGDIIYRYI 457
Query: 419 NSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELAS 478
NST++ AVI KTR V T APF+ASFSSRGP ++ +LKPDIAAPG+DILAA++ S
Sbjct: 458 NSTRSASAVIQKTRQV-TIPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRS 516
Query: 479 VTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTK- 537
+TGL GD + F ILSGTSMACPH A AAYVKSFHPDW+PAAIKSA++T+A P+ +
Sbjct: 517 LTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRRV 576
Query: 538 SDDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNCST 597
+ DAE A G GQINP +A PGL+YD++ SY +FLC EGYN+T + L+G + ++CS+
Sbjct: 577 NKDAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVG-TRSVSCSS 635
Query: 598 IRPAQGLDGLNYPSMHFHF-TNESSISAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSP 656
I P G D LNYP++ + ++S A+FRR VTNVG S+Y ATV +PKG+ +TV P
Sbjct: 636 IVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEP 695
Query: 657 RVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSDTKHSVKSPILVY 705
+ L+FS++ Q RSF V+VK + I+S LL W +HSV+SPI++Y
Sbjct: 696 QSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVIY 744
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Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 625 bits (1612), Expect = e-178, Method: Compositional matrix adjust.
Identities = 330/696 (47%), Positives = 457/696 (65%), Gaps = 17/696 (2%)
Query: 11 SAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSEEESVVSVFENT 70
SA H ++L +G A ES + +Y +SFNGF +L EA++++ E VVSVF N
Sbjct: 47 SAHLHHRAMLEQVVG-STFAPESVLHTYKRSFNGFAVKLTEEEAEKIASMEGVVSVFLNE 105
Query: 71 RRKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKG 130
+LHTTR+WDFLG + +RS + +SNI+VG+LDTGIW ESPSF+D+GF PPP KWKG
Sbjct: 106 MNELHTTRSWDFLGFPLTVPRRS-QVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKG 164
Query: 131 KCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASL 190
C T NF RCN+K+IGAR Y++ + P D P DT+GHGTHT+STAAG V A+L
Sbjct: 165 TCETSNNF-RCNRKIIGARSYHIGRPISPG-DVNGPRDTNGHGTHTASTAAGGLVSQANL 222
Query: 191 YGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGPS-RSY 249
YG+ GTARGGVP ARIA YKVCW+ GC+D DILAA+DDAI DGVD+IS+S+GG + R Y
Sbjct: 223 YGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHY 282
Query: 250 FDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGN 309
F D+I+IGSFHA+++GILT+ SAGN GP T +++PW+++VAAS++DRKFVT V++GN
Sbjct: 283 FVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGN 342
Query: 310 GMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLG 369
G G+SINTF YPL +G N T C +++ +KGKIV C
Sbjct: 343 GQSFQGVSINTFD--NQYYPLVSGRDIPN-TGFDKSTSRFCTDKSVNPNLLKGKIVVCEA 399
Query: 370 SGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIY 429
S L GA ++ D A + + + + P + +YI S ++P A I+
Sbjct: 400 SFGPHEFFKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIF 459
Query: 430 KTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIV 489
K+ + ++AP + SFSSRGP + T +++KPDI+ PG++ILAA+ +A V G+ RR
Sbjct: 460 KSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGI---RRNT 516
Query: 490 PFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSD-DAELASGSG 548
FNI+SGTSM+CPH A YVK+++P WSPAAIKSALMTTA+PM + + AE A GSG
Sbjct: 517 LFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSG 576
Query: 549 QINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNCSTIRPAQGLDGLN 608
+NP KAV PGL+YD N S Y +FLC +GYN+ A+ R+ G C++ + D LN
Sbjct: 577 HVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSA--CTSGNTGRVWD-LN 633
Query: 609 YPSMHFHFTNESSISAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRVLTFSRSQQTR 668
YPS + + + F RT+T+V S Y+A + +P+GL+++V+P VL+F+ +
Sbjct: 634 YPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRK 693
Query: 669 SFTVLVKGSMQSGASILSALLEWSDTKHSVKSPILV 704
SFT+ V+GS++ ++SA L WSD H V+SPI +
Sbjct: 694 SFTLTVRGSIK--GFVVSASLVWSDGVHYVRSPITI 727
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 306/704 (43%), Positives = 407/704 (57%), Gaps = 49/704 (6%)
Query: 35 IRSYGKSFNGFVARLLPHEAKRLSEEESVVSVFENTRRKLHTTRTWDFLGMSEKLQKRSS 94
+ +Y + +GF RL EA L + V+SV R +LHTTRT FLG+ E
Sbjct: 66 LYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFP 125
Query: 95 KA--QSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTR--CNKKVIGARY 150
+A S+++VG+LDTG+W ES S++D+GFGP P+ WKG C G NFT CN+K+IGAR+
Sbjct: 126 EAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARF 185
Query: 151 Y-----NLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSA 205
+ + +D + + +SP D DGHGTHTSSTAAG V+GASL G A GTARG P A
Sbjct: 186 FARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRA 245
Query: 206 RIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKG 265
R+A+YKVCW GGC DILAA D AI D V+++S+S+GG Y+ D ++IG+F AM++G
Sbjct: 246 RVAVYKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAAMERG 305
Query: 266 ILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISI--NTFSP 323
IL +CSAGN GP ++ NVAPWI TV A ++DR F LGNG +G+S+ P
Sbjct: 306 ILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALP 365
Query: 324 RKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYC-LGSGSQDYTIDRLQG 382
K + P A+N T N C GTL +KVKGKIV C G ++ D ++
Sbjct: 366 DK-LLPFIYAGNASNAT-----NGNLCMTGTLIPEKVKGKIVMCDRGINARVQKGDVVKA 419
Query: 383 AGTI------VAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVI-YKTRVVN 435
AG + A + +A A L+ T V + G I Y+ + NP A I VV
Sbjct: 420 AGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVG 479
Query: 436 TSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILS 495
+P +A+FSSRGP IT NILKPD+ APG++ILAA++ A TGL D R V FNI+S
Sbjct: 480 VKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIIS 539
Query: 496 GTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELAS---------- 545
GTSM+CPH + AA +KS HP+WSPAAI+SALMTTA KT D L
Sbjct: 540 GTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTA--YKTYKDGKPLLDIATGKPSTPF 597
Query: 546 --GSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNCSTIRPAQG 603
G+G ++PT A +PGLIYDL Y FLC Y S I R + R + C +
Sbjct: 598 DHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQI-RSVSR-RNYTCDPSKSYSV 655
Query: 604 LDGLNYPSMHFHFTNESSISAI-FRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRVLTFS 662
D LNYPS N + A + RTVT+VG A + G+ ++V P VL F
Sbjct: 656 AD-LNYPSFA---VNVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFK 711
Query: 663 RSQQTRSFTV--LVKGSMQSGASILSALLEWSDTKHSVKSPILV 704
+ + +S+TV V S SG++ + +EWSD KH V SP+ +
Sbjct: 712 EANEKKSYTVTFTVDSSKPSGSNSFGS-IEWSDGKHVVGSPVAI 754
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 268/713 (37%), Positives = 398/713 (55%), Gaps = 57/713 (7%)
Query: 35 IRSYGKSFNGFVARLLPHEAKRLSEEESVVSVFENTRRKLHTTRTWDFLGM----SEKLQ 90
+ SYG + GF A+L EA+ L VV+V + ++ TT ++ FLG+ + +
Sbjct: 72 LYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDGFGNSGVW 131
Query: 91 KRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTR--CNKKVIGA 148
+S Q II G+LDTG+W ESPSF+D G P KWKG C G +F+ CN+K+IGA
Sbjct: 132 SKSRFGQGTII-GVLDTGVWPESPSFDDTGMPSIPRKWKGICQEGESFSSSSCNRKLIGA 190
Query: 149 RYYNLDNALDPNTDQKSP---------VDTDGHGTHTSSTAAGETVKGASLYGIAQGTAR 199
R++ + + N+ ++SP D+ GHGTHT+ST G +V A++ G G AR
Sbjct: 191 RFFIRGHRV-ANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMANVLGNGAGVAR 249
Query: 200 GGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSF 259
G P A IA+YKVCW GC DILAA D AI D VD++S+S+GG +DD+I+IG+F
Sbjct: 250 GMAPGAHIAVYKVCWFNGCYSSDILAAIDVAIQDKVDVLSLSLGGFPIPLYDDTIAIGTF 309
Query: 260 HAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISIN 319
AM++GI C+AGN+GP + +V N APW+ T+ A ++DR+F V+L NG G
Sbjct: 310 RAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLANGKLLYG---- 365
Query: 320 TFSPRKAMYP---LTNGARAANVTAEIYGNVGA--CDYGTLSMKKVKGKIVYC-LGSGSQ 373
+++YP + N R V G+ G+ C G+L ++++GK+V C G +
Sbjct: 366 -----ESLYPGKGIKNAGREVEVIYVTGGDKGSEFCLRGSLPREEIRGKMVICDRGVNGR 420
Query: 374 DYTIDRLQGAGTIVAVDAPTDIAIAT------LIAGTFVVPEVGIKIDQYINSTKNPQA- 426
+ ++ AG + + A T+I L+ T + + + Y+N+T P+A
Sbjct: 421 SEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYTESVLLKAYVNATVKPKAR 480
Query: 427 VIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDR 486
+I+ V+ S AP +A FS+RGP +ILKPD+ APG++I+AA+ + TGLP D
Sbjct: 481 IIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWPQNLGPTGLPYDS 540
Query: 487 RIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAE---- 542
R V F ++SGTSM+CPH + A ++S +P+WSPAAIKSALMTTA + +
Sbjct: 541 RRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQGKAIKDGNK 600
Query: 543 ----LASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNCSTI 598
A G+G +NP KA++PGL+Y++ Y +LC G+ + I L K ++C+ I
Sbjct: 601 PAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDI--LAITHKNVSCNGI 658
Query: 599 RPAQGLDGLNYPSMHFHFTNESSISAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRV 658
LNYPS+ F + I RR VTNVG S+Y V +P+G+ V V+P+
Sbjct: 659 LRKNPGFSLNYPSIAVIFKRGKTTEMITRR-VTNVGSPNSIYSVNVKAPEGIKVIVNPKR 717
Query: 659 LTFSRSQQTRSFTV--LVKGSMQSG--ASILSALLEWSDTK---HSVKSPILV 704
L F QT S+ V ++K + G AS L W ++ V+SPI V
Sbjct: 718 LVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHNLMQRVRSPISV 770
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 149/584 (25%), Positives = 241/584 (41%), Gaps = 97/584 (16%)
Query: 28 KLARESKI-RSYGKSFNGFVARLLPHEAKRLSEEESVVSVFENTRRKLHTTRTWDFL--- 83
K + K+ R Y + F+GF +L +E +L + V +V+ N K + D
Sbjct: 95 KAVKNGKVNREYEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVTISE 154
Query: 84 -GMSEKLQKRSSKAQSN-----------IIVGLLDTGIWVESPSFNDKGFGPPPAKWKGK 131
+S ++ + +N I V ++DTG+ P K FG ++KG
Sbjct: 155 DAVSPQMDDSAPYIGANDAWDLGYTGKGIKVAIIDTGVEYNHPDLK-KNFG----QYKG- 208
Query: 132 CVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPV-----DTDGHGTHTSSTAAGETVK 186
Y +DN DP +++P + HGTH + T A
Sbjct: 209 ------------------YDFVDNDYDP---KETPTGDPRGEATDHGTHVAGTVA----- 242
Query: 187 GASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMD-ILAAFDDAIGDGVDLISISIGGP 245
A GT +G P A + Y+V GG + ++A + A+ DG D++++S+G
Sbjct: 243 -------ANGTIKGVAPDATLLAYRVLGPGGSGTTENVIAGVERAVQDGADVMNLSLGN- 294
Query: 246 SRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAV 305
S + D + S AM +G++ S GN GP W + +S + V A
Sbjct: 295 SLNNPDWATSTALDWAMSEGVVAVTSNGNSGPNG--------WTVGSPGTSREAISVGAT 346
Query: 306 KLGNGMRTSGISINTFSPRKAM-YPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKI 364
+L + ++ ++S K M Y + +A N G + K + GK+
Sbjct: 347 QLP--LNEYAVTFGSYSSAKVMGYNKEDDVKALNNKEVELVEAGIGEAKDFEGKDLTGKV 404
Query: 365 -VYCLGSGSQDYTIDRLQGAGTI-VAVDAPTDIAIATLIAGTFVVPEVGIKID---QYIN 419
V GS + D + AG I + V I + G VP + + ++ + ++
Sbjct: 405 AVVKRGSIAFVDKADNAKKAGAIGMVVYNNLSGEIEANVPG-MSVPTIKLSLEDGEKLVS 463
Query: 420 STKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASV 479
+ K + V+ + +A FSSRGP T ++KPDI+APG++I V
Sbjct: 464 ALKAGETKTTFKLTVSKALGEQVADFSSRGPVMDTW-MIKPDISAPGVNI---------V 513
Query: 480 TGLPGDRRIVPFNILS--GTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTK 537
+ +P P+ S GTSMA PH A A A +K P WS IK+A+M TA + K
Sbjct: 514 STIPTHDPDHPYGYGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTL--K 571
Query: 538 SDDAEL----ASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEG 577
D E+ A G+G A+ + SY FL + G
Sbjct: 572 DSDGEVYPHNAQGAGSARIMNAIKADSLVSPGSYSYGTFLKENG 615
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q8NZ80|C5AP_STRP8 C5a peptidase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 108/441 (24%), Positives = 180/441 (40%), Gaps = 83/441 (18%)
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG----ETVKGASLYGIAQGTARGGVPSARIAMYKVC 213
D + D K+ VD + HGTH S +G ET + L G +P A++ + +V
Sbjct: 180 DYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRL--------EGAMPEAQLLLMRVE 230
Query: 214 WSGGCADM--DILAAFDDAIGDGVDLISISIGGPSRSYFD--DSISIGSFHAMKKGILTA 269
G AD + A DA+ G +I++S G + +Y + D +A KG+
Sbjct: 231 IVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIV 290
Query: 270 CSAGNDGPYQGTVE---------------NVAPWIMTVAASSIDRKFVTAVKLGNGMRTS 314
SAGND + G A +TVA+ S D++ + +
Sbjct: 291 TSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQD 350
Query: 315 G----ISINTFSPRKAM-YPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLG 369
+S N F P KA Y N + ++ G + + G + K KI
Sbjct: 351 KEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFK---DKIANAKK 407
Query: 370 SGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIY 429
+G+ I Q G P ++ + F+ + G+ + + NPQ I
Sbjct: 408 AGAVGVLIYDNQDKG------FPIELPNVDQMPAAFISRKDGLLLKE------NPQKTIT 455
Query: 430 ---KTRVVNTSTAPFIASFSSRGPQKITLN-ILKPDIAAPGLDILAAYSELASVTGLPGD 485
+V+ T++ ++ FSS G +T + +KPDIAAPG DIL++ +
Sbjct: 456 FNATPKVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK-------- 504
Query: 486 RRIVPFNILSGTSMACPHAAAAAAYVKS----FHPDWSPAA----IKSALMTTATPMKTK 537
+ LSGTSM+ P A ++ +PD +P+ K LM++AT + +
Sbjct: 505 -----YAKLSGTSMSAPLVAGIMGLLQKQYEIQYPDMTPSERLDLAKKVLMSSATALYDE 559
Query: 538 SDDAELA---SGSGQINPTKA 555
+ A + G+G ++ KA
Sbjct: 560 DEKAYFSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 108/441 (24%), Positives = 181/441 (41%), Gaps = 83/441 (18%)
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG----ETVKGASLYGIAQGTARGGVPSARIAMYKVC 213
D + D K+ VD + HGTH S +G ET + L G +P A++ + +V
Sbjct: 180 DYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRL--------EGAMPEAQLLLMRVE 230
Query: 214 WSGGCADM--DILAAFDDAIGDGVDLISISIGGPSRSYFD--DSISIGSFHAMKKGILTA 269
G AD + A DA+ G +I++S G + +Y + D +A KG+
Sbjct: 231 IVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIV 290
Query: 270 CSAGNDGPYQGTVE---------------NVAPWIMTVAASSIDRKFVTAVKLGNGMRTS 314
SAGND + G A +TVA+ S D++ + +
Sbjct: 291 TSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQD 350
Query: 315 G----ISINTFSPRKAM-YPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLG 369
+S N F P KA Y N + ++ G + + G + K KI
Sbjct: 351 KEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFK---DKIANAKK 407
Query: 370 SGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIY 429
+G+ I Q G P ++ + F+ + G+ + + NPQ I
Sbjct: 408 AGAVGVLIYDNQDKG------FPIELPNVDQMPAAFISRKDGLLLKE------NPQKTIT 455
Query: 430 ---KTRVVNTSTAPFIASFSSRGPQKITLN-ILKPDIAAPGLDILAAYSELASVTGLPGD 485
+V+ T++ ++ FSS G +T + +KPDIAAPG DIL++ +
Sbjct: 456 FNATPKVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK-------- 504
Query: 486 RRIVPFNILSGTSMACPHAAAAAAYVK----SFHPDWSPAA----IKSALMTTATPMKTK 537
+ LSGTSM+ P A ++ + +PD +P+ K LM++AT + +
Sbjct: 505 -----YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDE 559
Query: 538 SDDAELA---SGSGQINPTKA 555
+ A + G+G ++ KA
Sbjct: 560 DEKAYFSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P58099|C5AP_STRP1 C5a peptidase OS=Streptococcus pyogenes serotype M1 GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 108/441 (24%), Positives = 181/441 (41%), Gaps = 83/441 (18%)
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG----ETVKGASLYGIAQGTARGGVPSARIAMYKVC 213
D + D K+ VD + HGTH S +G ET + L G +P A++ + +V
Sbjct: 180 DYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRL--------EGAMPEAQLLLMRVE 230
Query: 214 WSGGCADM--DILAAFDDAIGDGVDLISISIGGPSRSYFD--DSISIGSFHAMKKGILTA 269
G AD + A DA+ G +I++S G + +Y + D +A KG+
Sbjct: 231 IVNGLADYARNYAQAIIDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIV 290
Query: 270 CSAGNDGPYQGTVE---------------NVAPWIMTVAASSIDRKFVTAVKLGNGMRTS 314
SAGND + G A +TVA+ S D++ + +
Sbjct: 291 TSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQD 350
Query: 315 G----ISINTFSPRKAM-YPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLG 369
+S N F P KA Y N + ++ G + + G + K KI
Sbjct: 351 KEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFK---DKIANAKK 407
Query: 370 SGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIY 429
+G+ I Q G P ++ + F+ + G+ + + NPQ I
Sbjct: 408 AGAVGVLIYDNQDKG------FPIELPNVDQMPAAFISRKDGLLLKE------NPQKTIT 455
Query: 430 ---KTRVVNTSTAPFIASFSSRGPQKITLN-ILKPDIAAPGLDILAAYSELASVTGLPGD 485
+V+ T++ ++ FSS G +T + +KPDIAAPG DIL++ +
Sbjct: 456 FNATPKVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK-------- 504
Query: 486 RRIVPFNILSGTSMACPHAAAAAAYVK----SFHPDWSPAA----IKSALMTTATPMKTK 537
+ LSGTSM+ P A ++ + +PD +P+ K LM++AT + +
Sbjct: 505 -----YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDE 559
Query: 538 SDDAELA---SGSGQINPTKA 555
+ A + G+G ++ KA
Sbjct: 560 DEKAYFSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M1 (taxid: 301447) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P15926|C5AP_STRPY C5a peptidase OS=Streptococcus pyogenes GN=scpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 107/441 (24%), Positives = 180/441 (40%), Gaps = 83/441 (18%)
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG----ETVKGASLYGIAQGTARGGVPSARIAMYKVC 213
D + D K+ VD + HGTH S +G ET + L G +P A++ + +V
Sbjct: 180 DYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRL--------EGAMPEAQLLLMRVE 230
Query: 214 WSGGCADM--DILAAFDDAIGDGVDLISISIGGPSRSYFD--DSISIGSFHAMKKGILTA 269
G AD + A DA+ G +I++S G + +Y + D +A KG+
Sbjct: 231 IVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIV 290
Query: 270 CSAGNDGPYQGTVE---------------NVAPWIMTVAASSIDRKFVTAVKLGNGMRTS 314
SAGND + G A +TVA+ S D++ + +
Sbjct: 291 TSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAMVKTDDQQD 350
Query: 315 G----ISINTFSPRKAM-YPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLG 369
+S N F P KA Y N + ++ G + + G + K K+
Sbjct: 351 KEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFK---DKVANAKK 407
Query: 370 SGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIY 429
+G+ I Q G P ++ + F+ + G+ + NPQ I
Sbjct: 408 AGAVGVLIYDNQDKG------FPIELPNVDQMPAAFISRKDGLLL------KDNPQKTIT 455
Query: 430 ---KTRVVNTSTAPFIASFSSRGPQKITLN-ILKPDIAAPGLDILAAYSELASVTGLPGD 485
+V+ T++ ++ FSS G +T + +KPDIAAPG DIL++ +
Sbjct: 456 FNATPKVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK-------- 504
Query: 486 RRIVPFNILSGTSMACPHAAAAAAYVK----SFHPDWSPAA----IKSALMTTATPMKTK 537
+ LSGTSM+ P A ++ + +PD +P+ K LM++AT + +
Sbjct: 505 -----YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDE 559
Query: 538 SDDAELA---SGSGQINPTKA 555
+ A + G+G ++ KA
Sbjct: 560 DEKAYFSPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes (taxid: 1314) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 105/438 (23%), Positives = 180/438 (41%), Gaps = 77/438 (17%)
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAG----ETVKGASLYGIAQGTARGGVPSARIAMYKVC 213
D + D K+ VD + HGTH S +G ET + L G +P A++ + +V
Sbjct: 182 DYSKDGKTAVDQE-HGTHVSGILSGNAPSETKEPYRL--------EGAMPEAQLLLMRVE 232
Query: 214 WSGGCADM--DILAAFDDAIGDGVDLISISIGGPSRSYFD--DSISIGSFHAMKKGILTA 269
G AD + A DA+ G +I++S G + +Y + D +A KG+
Sbjct: 233 IVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIV 292
Query: 270 CSAGNDGPYQGTVE---------------NVAPWIMTVAASSIDRKFVTAVKLGNGMRTS 314
SAGND + G A +TVA+ S D++ + +
Sbjct: 293 TSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQD 352
Query: 315 G----ISINTFSPRKAM-YPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLG 369
+S N F P KA Y N + ++ G + + G + K KI
Sbjct: 353 KEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFK---DKIANAKK 409
Query: 370 SGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIY 429
+G+ I Q G P ++ + F+ + G+ + +++K
Sbjct: 410 AGAVGVLIYDNQDKG------FPIELPNVDQMPAAFISRKDGLLLK---DNSKKTITFNA 460
Query: 430 KTRVVNTSTAPFIASFSSRGPQKITLN-ILKPDIAAPGLDILAAYSELASVTGLPGDRRI 488
+V+ T++ ++ FSS G +T + +KPDIAAPG DIL++ +
Sbjct: 461 TPKVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK----------- 506
Query: 489 VPFNILSGTSMACPHAAAAAAYVK----SFHPDWSPAA----IKSALMTTATPMKTKSDD 540
+ LSGTSM+ P A ++ + +PD +P+ K LM++AT + + +
Sbjct: 507 --YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEK 564
Query: 541 AELA---SGSGQINPTKA 555
A + G+G ++ KA
Sbjct: 565 AYFSPRQQGAGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 712 | ||||||
| 224069800 | 740 | predicted protein [Populus trichocarpa] | 0.973 | 0.936 | 0.718 | 0.0 | |
| 255585729 | 740 | Xylem serine proteinase 1 precursor, put | 0.985 | 0.948 | 0.680 | 0.0 | |
| 225440944 | 744 | PREDICTED: xylem serine proteinase 1-lik | 0.985 | 0.943 | 0.623 | 0.0 | |
| 297740086 | 707 | unnamed protein product [Vitis vinifera] | 0.985 | 0.992 | 0.623 | 0.0 | |
| 357510987 | 746 | Xylem serine proteinase [Medicago trunca | 0.985 | 0.941 | 0.646 | 0.0 | |
| 356537065 | 744 | PREDICTED: xylem serine proteinase 1-lik | 0.978 | 0.936 | 0.641 | 0.0 | |
| 18414296 | 766 | Subtilisin-like serine endopeptidase fam | 0.990 | 0.920 | 0.619 | 0.0 | |
| 297806329 | 767 | subtilase family protein [Arabidopsis ly | 0.990 | 0.919 | 0.614 | 0.0 | |
| 449451257 | 744 | PREDICTED: xylem serine proteinase 1-lik | 0.985 | 0.943 | 0.613 | 0.0 | |
| 449463008 | 741 | PREDICTED: LOW QUALITY PROTEIN: xylem se | 0.974 | 0.936 | 0.586 | 0.0 |
| >gi|224069800|ref|XP_002326417.1| predicted protein [Populus trichocarpa] gi|222833610|gb|EEE72087.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/701 (71%), Positives = 577/701 (82%), Gaps = 8/701 (1%)
Query: 8 AGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSEEESVVSVF 67
AGIS EHHSLL A GDE +A+ SKI SYGK+FNGF ARLLPHE KRLS+E+SVVSVF
Sbjct: 41 AGISTSDEHHSLLLAATGDESIAKNSKIYSYGKNFNGFAARLLPHEVKRLSDEDSVVSVF 100
Query: 68 ENTRRKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAK 127
NTR KLHTTR+WDFLGM + KR +SNIIVG+LDTGI+V++PSFND+G+GP PAK
Sbjct: 101 ANTRNKLHTTRSWDFLGMPQT-AKRRLDIESNIIVGVLDTGIYVDAPSFNDEGYGPVPAK 159
Query: 128 WKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKG 187
WKGKCV GANFT CN KVIGARYYNL+N+ + SP D DGHGTHTSSTAAG VK
Sbjct: 160 WKGKCVKGANFTGCNNKVIGARYYNLENS---EVENPSPADLDGHGTHTSSTAAGIAVKD 216
Query: 188 ASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGPSR 247
ASLYGIAQGTARGGVPSARIAMYKVCW GC+DMD+LAAFDDAI DGVD+IS+SIGG SR
Sbjct: 217 ASLYGIAQGTARGGVPSARIAMYKVCWGSGCSDMDLLAAFDDAISDGVDIISVSIGGASR 276
Query: 248 SYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKL 307
S+F D I+IGSFH+MKKGILT+CSAGN+GPY G+VENVAPWIMT+AA+SIDR+F TAVKL
Sbjct: 277 SFFQDPIAIGSFHSMKKGILTSCSAGNNGPYPGSVENVAPWIMTIAATSIDRQFTTAVKL 336
Query: 308 GNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYC 367
GNGM+ +GISINTFSP+K YPL +GARA+N + + YGN+ ACDYGTLSM KVKGK+VYC
Sbjct: 337 GNGMKATGISINTFSPKKETYPLIDGARASNSSGDHYGNISACDYGTLSMDKVKGKLVYC 396
Query: 368 LGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAV 427
LGS QDYTI LQGAG I ++DAPTD A AT+I GT V + G KID YINST+NP+AV
Sbjct: 397 LGSNGQDYTIKELQGAGVITSLDAPTDTAYATVIPGTSVQLKDGYKIDVYINSTRNPRAV 456
Query: 428 IYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRR 487
IYKTR S AP +ASFSSRGPQ I LNILKPDIAAPGL ILAAYS+LA+VTG P D R
Sbjct: 457 IYKTRTTYMS-APSVASFSSRGPQLINLNILKPDIAAPGLGILAAYSKLATVTGDPNDSR 515
Query: 488 IVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGS 547
PFNI+SGTSM+CPHAAAAAAYVK+FHPDWSPAAIKSALMTTATP+K K DAEL SGS
Sbjct: 516 YSPFNIISGTSMSCPHAAAAAAYVKTFHPDWSPAAIKSALMTTATPIKIKDVDAELGSGS 575
Query: 548 GQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNCSTIRPAQGLDGL 607
GQINP KAVHPGL+YD+ +SSY RFLCKEGYNST I L+G KKK CS +PAQG DGL
Sbjct: 576 GQINPLKAVHPGLVYDIPMSSYIRFLCKEGYNSTTISLLLGGKKKYRCSNFQPAQGTDGL 635
Query: 608 NYPSMHFHFTN-ESSISAIFRRTVTNVGFA-KSLYKATVHSPKGLSVTVSPRVLTFSRSQ 665
NYPSMH + ES+ISA+F RT+TNVG+ SLYKATV SPK LS+ + P L F+R
Sbjct: 636 NYPSMHAQLKSAESNISAVFYRTLTNVGYGNNSLYKATVTSPKDLSIKIVPNSLKFNRPH 695
Query: 666 QTRSFTVLVK-GSMQSGASILSALLEWSDTKHSVKSPILVY 705
Q +SF V V+ GSMQ+G +LSALLEWSD+KH V+SPI++Y
Sbjct: 696 QKQSFKVFVEGGSMQNGTRLLSALLEWSDSKHIVRSPIIIY 736
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585729|ref|XP_002533546.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223526582|gb|EEF28836.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 992 bits (2564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/710 (68%), Positives = 567/710 (79%), Gaps = 8/710 (1%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSEE 60
MG++PE AGIS V +HH+LL TA+GDE +ARESKI SYG+SFNGFVARLLPHE RLSEE
Sbjct: 37 MGDLPE-AGISVVDQHHNLLVTAVGDESIARESKIYSYGRSFNGFVARLLPHEVNRLSEE 95
Query: 61 ESVVSVFENTRRKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKG 120
ESVVSVFENTR KLHTTR+WD+LGM+E +Q+R + +S+I+VG+LDTGI+V +PSF D+G
Sbjct: 96 ESVVSVFENTRNKLHTTRSWDYLGMTETIQRRLT-IESSIVVGVLDTGIYVNAPSFRDEG 154
Query: 121 FGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTA 180
+GP PAKWKGKC TGANFT CNKKVIGA+YY+L N +T KSP D DGHGTHTSST
Sbjct: 155 YGPNPAKWKGKCATGANFTGCNKKVIGAKYYDLQNI---STRDKSPADDDGHGTHTSSTV 211
Query: 181 AGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISI 240
AG V ASLYGI GTARGGVPSARIAMYKVCW GGC DMD+LAAFDDAI DGVDL+S+
Sbjct: 212 AGVAVNSASLYGIGNGTARGGVPSARIAMYKVCWEGGCTDMDLLAAFDDAIADGVDLLSV 271
Query: 241 SIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRK 300
SIGG SR Y D I+IGSFHAMK GILT+CSAGNDGP Q +V NVAPWIMTV ASSIDR+
Sbjct: 272 SIGGWSRDYIQDPIAIGSFHAMKHGILTSCSAGNDGPMQSSVSNVAPWIMTVGASSIDRQ 331
Query: 301 FVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKV 360
F TA+KLGNG++T+GISI+TF+P+K MYPLT+G A NV+ Y N ACD GTL KV
Sbjct: 332 FKTALKLGNGLKTTGISISTFAPKKQMYPLTSGPLANNVSNSDYVNTSACDAGTLDKNKV 391
Query: 361 KGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINS 420
KGKIVYCLG+G QDYTI L+GAG I+++D D+A ++I T V + G+KID YIN+
Sbjct: 392 KGKIVYCLGNGPQDYTIRDLKGAGVILSIDTFNDVAFTSVIRSTSVSIKDGLKIDHYINT 451
Query: 421 TKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVT 480
TKNPQAVIYKTR V + AP IASFS+RGPQ I+LNILKPD+AAPGLDILA YS LA++T
Sbjct: 452 TKNPQAVIYKTRTVPIA-APAIASFSARGPQLISLNILKPDLAAPGLDILAGYSRLATIT 510
Query: 481 GLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDD 540
G P D+R FNI+SGTSM+CPHAAAAA YVKSFHPDWSPA IKSALMTTATPMK K
Sbjct: 511 GDPADKRYSAFNIISGTSMSCPHAAAAAGYVKSFHPDWSPAMIKSALMTTATPMKIKDIS 570
Query: 541 AELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNCSTIRP 600
EL SGSGQINP +A+HPGL+YD+++S+Y FLCKEGYNST IG LIG KKK NCS +P
Sbjct: 571 MELGSGSGQINPRRAIHPGLVYDISMSNYLSFLCKEGYNSTTIGSLIGGKKKYNCSDFKP 630
Query: 601 AQGLDGLNYPSMHFHF-TNESSISAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRVL 659
A+G DGLNYPSMH T ES ISA++ RTVT+VG+ KS+YKA V +P+ V V P L
Sbjct: 631 ARGSDGLNYPSMHLQLKTPESKISAVYYRTVTHVGYGKSVYKAIVKAPENFLVKVIPDTL 690
Query: 660 TFSRSQQTRSFTVLVKG-SMQSGASILSALLEWSDTKHSVKSPILVYKQF 708
F+ Q +F VLVKG M +G I +A LEW+D+KHSVKSPI +Y+
Sbjct: 691 RFTTKHQKLNFKVLVKGDQMANGKEIQTAWLEWNDSKHSVKSPIAIYRNL 740
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440944|ref|XP_002277106.1| PREDICTED: xylem serine proteinase 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/710 (62%), Positives = 551/710 (77%), Gaps = 8/710 (1%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSEE 60
MG++P+ ++A +HHSLL+ +G +++AR+S I SYG+SFNGF ARLLPHEAK LSE+
Sbjct: 38 MGDLPKTGAVTAA-DHHSLLSAVVGSDRMARDSTIHSYGRSFNGFAARLLPHEAKILSEK 96
Query: 61 ESVVSVFENTRRKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKG 120
E VVSVF NT RKLHTTR+WDFLGM EK++KR+ KA+ N+++GLLDTGIW++ PSF DKG
Sbjct: 97 EGVVSVFPNTMRKLHTTRSWDFLGMREKMKKRNPKAEINMVIGLLDTGIWMDCPSFKDKG 156
Query: 121 FGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDN--ALDPNTDQKSPVDTDGHGTHTSS 178
+GPPP KWKGKC + FT CN KVIGA+YY+LD+ + D SPVDTDGHGTHT+S
Sbjct: 157 YGPPPTKWKGKCSNSSGFTGCNNKVIGAKYYDLDHQPGMLGKDDILSPVDTDGHGTHTAS 216
Query: 179 TAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLI 238
TAAG VK ASL+G+ +GTARGGVP ARIAMYKVCW GC+DM++LA FDDAI DGVD++
Sbjct: 217 TAAGIVVKNASLFGVGKGTARGGVPLARIAMYKVCWYTGCSDMNLLAGFDDAIADGVDVL 276
Query: 239 SISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSID 298
S+SIGG +F+D I+IG+FHAM++G+L + SAGNDGP + TV+NVAPWI+TV A+ +D
Sbjct: 277 SVSIGGTVGPFFEDPIAIGAFHAMRRGVLVSSSAGNDGPLEATVQNVAPWILTVGATGLD 336
Query: 299 RKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMK 358
R+F + VKLGNGM+ SG+S+NTFSPRK MYPLT+G A+N + +GNV ACD+ +L +
Sbjct: 337 REFRSQVKLGNGMKASGVSVNTFSPRKKMYPLTSGTLASNSSGAYWGNVSACDWASLIPE 396
Query: 359 KVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYI 418
+VKGKIVYC+G+ QD+ I L G GTI+++D PTDI +I TFV E G KID+YI
Sbjct: 397 EVKGKIVYCMGNRGQDFNIRDLGGIGTIMSLDEPTDIGFTFVIPSTFVTSEEGRKIDKYI 456
Query: 419 NSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELAS 478
NSTK QAVIYK++ + APF++SFSSRGPQ ++ NILKPDI APGLDILA YS+LA
Sbjct: 457 NSTKKAQAVIYKSKAFKIA-APFVSSFSSRGPQDLSPNILKPDIVAPGLDILAGYSKLAP 515
Query: 479 VTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKS 538
++G P DRR FNIL+GTSM+CPH AAAAAYVKSFHP WSPAAIKSALMTTAT +K K
Sbjct: 516 ISGDPEDRRFANFNILTGTSMSCPHVAAAAAYVKSFHPKWSPAAIKSALMTTATTLKIK- 574
Query: 539 DDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNCSTI 598
D L SGSGQ+NP AVHPGL+YD+ S Y RFLCKEGYNST IG L G K+K CS
Sbjct: 575 -DNALGSGSGQLNPRIAVHPGLVYDIPTSGYIRFLCKEGYNSTTIGLLTGGKQKYKCSNF 633
Query: 599 RPAQGLDGLNYPSMHFHFTNESS-ISAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPR 657
RPA G DGLNYPSMH + ++ SA+F RTVT+VG S+YKATV + KGLSV V P
Sbjct: 634 RPALGSDGLNYPSMHLQIKDPTARFSAVFYRTVTSVGHGASVYKATVKATKGLSVRVVPN 693
Query: 658 VLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSDTKHSVKSPILVYKQ 707
L+F ++ Q RSF +++KG + + I SA LEWSD+KH VKSPILVY+Q
Sbjct: 694 TLSFQKAHQRRSFKIVLKGK-PNNSRIQSAFLEWSDSKHKVKSPILVYRQ 742
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740086|emb|CBI30268.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/710 (62%), Positives = 551/710 (77%), Gaps = 8/710 (1%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSEE 60
MG++P+ ++A +HHSLL+ +G +++AR+S I SYG+SFNGF ARLLPHEAK LSE+
Sbjct: 1 MGDLPKTGAVTAA-DHHSLLSAVVGSDRMARDSTIHSYGRSFNGFAARLLPHEAKILSEK 59
Query: 61 ESVVSVFENTRRKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKG 120
E VVSVF NT RKLHTTR+WDFLGM EK++KR+ KA+ N+++GLLDTGIW++ PSF DKG
Sbjct: 60 EGVVSVFPNTMRKLHTTRSWDFLGMREKMKKRNPKAEINMVIGLLDTGIWMDCPSFKDKG 119
Query: 121 FGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDN--ALDPNTDQKSPVDTDGHGTHTSS 178
+GPPP KWKGKC + FT CN KVIGA+YY+LD+ + D SPVDTDGHGTHT+S
Sbjct: 120 YGPPPTKWKGKCSNSSGFTGCNNKVIGAKYYDLDHQPGMLGKDDILSPVDTDGHGTHTAS 179
Query: 179 TAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLI 238
TAAG VK ASL+G+ +GTARGGVP ARIAMYKVCW GC+DM++LA FDDAI DGVD++
Sbjct: 180 TAAGIVVKNASLFGVGKGTARGGVPLARIAMYKVCWYTGCSDMNLLAGFDDAIADGVDVL 239
Query: 239 SISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSID 298
S+SIGG +F+D I+IG+FHAM++G+L + SAGNDGP + TV+NVAPWI+TV A+ +D
Sbjct: 240 SVSIGGTVGPFFEDPIAIGAFHAMRRGVLVSSSAGNDGPLEATVQNVAPWILTVGATGLD 299
Query: 299 RKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMK 358
R+F + VKLGNGM+ SG+S+NTFSPRK MYPLT+G A+N + +GNV ACD+ +L +
Sbjct: 300 REFRSQVKLGNGMKASGVSVNTFSPRKKMYPLTSGTLASNSSGAYWGNVSACDWASLIPE 359
Query: 359 KVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYI 418
+VKGKIVYC+G+ QD+ I L G GTI+++D PTDI +I TFV E G KID+YI
Sbjct: 360 EVKGKIVYCMGNRGQDFNIRDLGGIGTIMSLDEPTDIGFTFVIPSTFVTSEEGRKIDKYI 419
Query: 419 NSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELAS 478
NSTK QAVIYK++ + APF++SFSSRGPQ ++ NILKPDI APGLDILA YS+LA
Sbjct: 420 NSTKYAQAVIYKSKAFKIA-APFVSSFSSRGPQDLSPNILKPDIVAPGLDILAGYSKLAP 478
Query: 479 VTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKS 538
++G P DRR FNIL+GTSM+CPH AAAAAYVKSFHP WSPAAIKSALMTTAT +K K
Sbjct: 479 ISGDPEDRRFANFNILTGTSMSCPHVAAAAAYVKSFHPKWSPAAIKSALMTTATTLKIK- 537
Query: 539 DDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNCSTI 598
D L SGSGQ+NP AVHPGL+YD+ S Y RFLCKEGYNST IG L G K+K CS
Sbjct: 538 -DNALGSGSGQLNPRIAVHPGLVYDIPTSGYIRFLCKEGYNSTTIGLLTGGKQKYKCSNF 596
Query: 599 RPAQGLDGLNYPSMHFHFTNESS-ISAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPR 657
RPA G DGLNYPSMH + ++ SA+F RTVT+VG S+YKATV + KGLSV V P
Sbjct: 597 RPALGSDGLNYPSMHLQIKDPTARFSAVFYRTVTSVGHGASVYKATVKATKGLSVRVVPN 656
Query: 658 VLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSDTKHSVKSPILVYKQ 707
L+F ++ Q RSF +++KG + + I SA LEWSD+KH VKSPILVY+Q
Sbjct: 657 TLSFQKAHQRRSFKIVLKGK-PNNSRIQSAFLEWSDSKHKVKSPILVYRQ 705
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357510987|ref|XP_003625782.1| Xylem serine proteinase [Medicago truncatula] gi|355500797|gb|AES82000.1| Xylem serine proteinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/711 (64%), Positives = 557/711 (78%), Gaps = 9/711 (1%)
Query: 1 MGNVP-EEAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSE 59
MG +P A I+ + HH++L AIG++ LAR+S I SYGKSFNGFVARLLPHEA++L E
Sbjct: 37 MGELPAPRAHITMEQRHHNMLEAAIGNKLLARKSIIHSYGKSFNGFVARLLPHEAEKLQE 96
Query: 60 EESVVSVFENTRRKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDK 119
EE+VVSVF NT KLHTTR+WDFLGM K+ KR+ +S+II+G+LDTGIWV+ PSFND+
Sbjct: 97 EENVVSVFPNTYHKLHTTRSWDFLGMPLKV-KRNPNIESHIIIGVLDTGIWVDCPSFNDE 155
Query: 120 GFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST 179
GFGPPP +WKGKCV G NFT CN KVIGA+Y+NLD + P + SPVD GHGTHTSST
Sbjct: 156 GFGPPPRRWKGKCVQGGNFTGCNNKVIGAKYFNLDPS-GPTIENPSPVDDQGHGTHTSST 214
Query: 180 AAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLIS 239
AAG V+GASLYGI +G ARGGVPSARIAMYKVCW+ GC+DMD+LA FD+AI DGV+ IS
Sbjct: 215 AAGSVVRGASLYGIGKGNARGGVPSARIAMYKVCWTIGCSDMDMLAGFDEAIADGVNFIS 274
Query: 240 ISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDR 299
+SIGGPSR +F D I+IG+FHAMK+G+LT+CSAGNDGP +VENVAPWIMTVAAS++DR
Sbjct: 275 VSIGGPSRDFFSDPIAIGAFHAMKRGVLTSCSAGNDGPRPMSVENVAPWIMTVAASTVDR 334
Query: 300 KFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKK 359
+F T V G+G + G+SINTF+P K MYPLT+G+ AAN++ + YGN CDYGTL K
Sbjct: 335 QFTTQVAFGDGKKIRGLSINTFTPEKNMYPLTSGSLAANLSGDEYGNPSGCDYGTLDKDK 394
Query: 360 VKGKIVYCL-GSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFV-VPEVGIKIDQY 417
V G+IVYC G+GSQD TI L GAGTIV ++ D + T+I G FV + VG I+ Y
Sbjct: 395 VMGRIVYCAGGTGSQDLTIKELGGAGTIVGLEEDEDASYTTVIPGAFVDMYTVGKNIEIY 454
Query: 418 INSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELA 477
INSTKNPQAVIYK+ AP++ASFSSRGPQKIT NILKPD+AAPGLDILAAYS+LA
Sbjct: 455 INSTKNPQAVIYKSASTRFP-APYLASFSSRGPQKITPNILKPDLAAPGLDILAAYSKLA 513
Query: 478 SVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTK 537
++TG P D R FNI+SGTSMACPHA AAAAYVKSFHPDWSPAAIKSALMTTATP+K
Sbjct: 514 TLTGYPEDTRFEVFNIVSGTSMACPHAIAAAAYVKSFHPDWSPAAIKSALMTTATPIKGN 573
Query: 538 SDDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNCST 597
+ EL SGSGQI+P KA+HPGLIYD+ ++SY FLCK+GYN T+IG LIG K NCS
Sbjct: 574 DNFTELGSGSGQISPLKALHPGLIYDIRMNSYIAFLCKQGYNGTSIGILIG-SKSFNCSG 632
Query: 598 IRPAQGLDGLNYPSMHFH-FTNESSISAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSP 656
++PA G DG+NYP+MH ++ SSISA+F RT+TNVG+ S YKA V +P+GLSV V P
Sbjct: 633 VKPAPGTDGINYPTMHIQLLSSSSSISAVFYRTLTNVGYGTSTYKAKVTAPEGLSVNVIP 692
Query: 657 RVLTFSRSQQTRSFTVLVKGSMQSGASI-LSALLEWSDTKHSVKSPILVYK 706
L F++ Q SF V++KG S I LSALLEW+D+KHSV+SPI+V+K
Sbjct: 693 DTLKFTKLHQDLSFKVVLKGPPMSDEKITLSALLEWNDSKHSVRSPIVVFK 743
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537065|ref|XP_003537051.1| PREDICTED: xylem serine proteinase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/712 (64%), Positives = 546/712 (76%), Gaps = 15/712 (2%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSEE 60
MG +P + + H++LL TAIGD +LARESKI SYGKSFNGFVARLLP+EA++L EE
Sbjct: 39 MGELPVDRAYAPEDHHNNLLATAIGDWQLARESKIHSYGKSFNGFVARLLPYEAEKLLEE 98
Query: 61 ESVVSVFENTRRKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKG 120
++V+SVF NT+ KLHTTR+WDFLG+ KL R S +S+IIVG+LDTGI ++ PSFNDKG
Sbjct: 99 DNVLSVFPNTQNKLHTTRSWDFLGLPLKLN-RHSNVESDIIVGVLDTGISLDCPSFNDKG 157
Query: 121 FGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTA 180
FGPPP WKGKCVTGANFT CN KVIGA+Y+NL NA + N SP D DGHGTHTSSTA
Sbjct: 158 FGPPPPSWKGKCVTGANFTGCNNKVIGAKYFNLQNAPEQNL---SPADDDGHGTHTSSTA 214
Query: 181 AGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISI 240
AG V+GASL GI GTARGGV ARIAMYKVCWS GC+DMD+LAAFD+AI DGV++I++
Sbjct: 215 AGVVVRGASLDGIGVGTARGGVSRARIAMYKVCWSDGCSDMDLLAAFDEAIDDGVNVITV 274
Query: 241 SIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRK 300
S+GG R +F D +IGSFHAMK+GILT+CSAGN+GP TVENVAPWI+TVAAS+ DR+
Sbjct: 275 SLGGTPRKFFSDPTAIGSFHAMKRGILTSCSAGNNGPSTMTVENVAPWILTVAASNTDRQ 334
Query: 301 FVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKV 360
F TAV L +G + G+SINTF+P K MYPL +GA A+ V+ + YGN ACD+G+LS +KV
Sbjct: 335 FTTAVHLADGKKARGMSINTFTPEKKMYPLISGALASKVSRDGYGNASACDHGSLSQEKV 394
Query: 361 KGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEV-GIKIDQYIN 419
GKIVYCLG+G+ DY I L+GAGTIV V P D + +I G ++ G ID YIN
Sbjct: 395 MGKIVYCLGTGNMDYIIKELKGAGTIVGVSDPNDYSTIPVIPGVYIDANTDGKAIDLYIN 454
Query: 420 STKNPQAVIYKTRVVNTST---APFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSEL 476
STKN QAVI KT TST AP++ASFSSRGPQ IT+NILKPD++APG+DILA YS+L
Sbjct: 455 STKNAQAVIQKT----TSTRGPAPYVASFSSRGPQSITVNILKPDLSAPGVDILAGYSKL 510
Query: 477 ASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKT 536
A++TG P D R FNILSGTSMACPHAA+AAAYVKSFHPDWSPAAIKSALMTTA PM+
Sbjct: 511 ATLTGDPADNRRNVFNILSGTSMACPHAASAAAYVKSFHPDWSPAAIKSALMTTAIPMRI 570
Query: 537 KSDDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNCS 596
K AEL SGSGQINP A+ PGL+Y+ ++ SY FLCKEGYNS++IG LIG K LNCS
Sbjct: 571 KDATAELGSGSGQINPVSALDPGLLYNSSMDSYIAFLCKEGYNSSSIGILIG-TKGLNCS 629
Query: 597 TIRPAQGLDGLNYPSMHFHFT-NESSISAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVS 655
TI P QG DG+NYPSMH + +SISAIF R+VTNVG S YKA V +PKGLS+ V
Sbjct: 630 TISPPQGTDGINYPSMHTQIIPSNASISAIFYRSVTNVGSGNSTYKAKVRAPKGLSIEVI 689
Query: 656 PRVLTFSRSQQTRSFTVLVKG-SMQSGASILSALLEWSDTKHSVKSPILVYK 706
P L F Q SF V++KG M I SA LEW+D+KH+V+SPI+VYK
Sbjct: 690 PDTLNFGGVNQELSFKVVLKGPPMPKETKIFSASLEWNDSKHNVRSPIVVYK 741
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18414296|ref|NP_568124.1| Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana] gi|7340647|emb|CAB82927.1| cucumisin precursor-like protein [Arabidopsis thaliana] gi|332003251|gb|AED90634.1| Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/723 (61%), Positives = 552/723 (76%), Gaps = 18/723 (2%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSEE 60
MG E + + A + HH+LL T IGDE ARE KI SYGK+ NGFVARL PHEA++LS E
Sbjct: 39 MGEATENSLVEAAENHHNLLMTVIGDESKARELKIYSYGKNINGFVARLFPHEAEKLSRE 98
Query: 61 ESVVSVFENTRRKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKG 120
E VVSVF+NT+R+LHTTR+WDFLG+ E KRS +SNIIVG+LDTGI VESPSFNDKG
Sbjct: 99 EGVVSVFKNTQRQLHTTRSWDFLGLVESKYKRSVGIESNIIVGVLDTGIDVESPSFNDKG 158
Query: 121 FGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTA 180
GPPPAKWKGKCVTG NFTRCN KVIGA+Y+++ + P+ + + D DGHGTHTSST
Sbjct: 159 VGPPPAKWKGKCVTGNNFTRCNNKVIGAKYFHIQSEGLPDGEGDTAADHDGHGTHTSSTI 218
Query: 181 AGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISI 240
AG +V ASL+GIA GTARGGVPSARIA YKVCW GC DMD+LAAFD+AI DGVD+ISI
Sbjct: 219 AGVSVSSASLFGIANGTARGGVPSARIAAYKVCWDSGCTDMDMLAAFDEAISDGVDIISI 278
Query: 241 SIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRK 300
SIGG S +F+D I+IG+FHAMK+GILT CSAGN+GP TV N+APW+MTVAA+S+DRK
Sbjct: 279 SIGGASLPFFEDPIAIGAFHAMKRGILTTCSAGNNGPGLFTVSNLAPWVMTVAANSLDRK 338
Query: 301 FVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKV 360
F T VKLGNG+ SGIS+N F+PRK MYPLT+G+ A+N++A YG C+ GTL KV
Sbjct: 339 FETVVKLGNGLTASGISLNGFNPRKKMYPLTSGSLASNLSAGGYGEPSTCEPGTLGEDKV 398
Query: 361 KGKIVYC--------LGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGI 412
GK+VYC G QD+ + L+GAG IV + PTD+A +TLIAG++V E G
Sbjct: 399 MGKVVYCEAGREEGGNGGQGQDHVVRSLKGAGVIVQLLEPTDMATSTLIAGSYVFFEDGT 458
Query: 413 KIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAA 472
KI +YINSTKNPQAVI+KT+ AP I+SFS+RGPQ+I+ NILKPDI+APGL+ILAA
Sbjct: 459 KITEYINSTKNPQAVIFKTKTTKM-LAPSISSFSARGPQRISPNILKPDISAPGLNILAA 517
Query: 473 YSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532
YS+LASVTG P D R F+I+SGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT
Sbjct: 518 YSKLASVTGYPDDNRRTLFSIMSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 577
Query: 533 PMKTKSDDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIG---- 588
PM+ K ++AEL+ GSGQINP +A+HPGL+YD+ +Y RFLCKEGYNST+IG L G
Sbjct: 578 PMRIKGNEAELSYGSGQINPRRAIHPGLVYDITEDAYLRFLCKEGYNSTSIGLLTGDNSN 637
Query: 589 --RKKKLNCSTIRPAQGLDGLNYPSMHFHF-TNESSISAIFRRTVTNVGFAKSLYKATVH 645
KK+ NC I+ G DGLNYPS+H + E+ +S +F RTVTNVG+ S Y A V
Sbjct: 638 NTTKKEYNCENIKRGLGSDGLNYPSLHKQVNSTEAKVSEVFYRTVTNVGYGPSTYVARVW 697
Query: 646 SPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSM-QSGASILSALLEWSDTK-HSVKSPIL 703
+PKGL V V P+V++F R ++ R+F V++ G ++ I+SA +EW D++ H V+SPIL
Sbjct: 698 APKGLRVEVVPKVMSFERPKEKRNFKVVIDGVWDETMKGIVSASVEWDDSRGHLVRSPIL 757
Query: 704 VYK 706
+++
Sbjct: 758 LFR 760
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297806329|ref|XP_002871048.1| subtilase family protein [Arabidopsis lyrata subsp. lyrata] gi|297316885|gb|EFH47307.1| subtilase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/724 (61%), Positives = 548/724 (75%), Gaps = 19/724 (2%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSEE 60
MG E + + A + HH+LL T IGDE ARE K+ SYGK+ NGFVARL PHEA++LS E
Sbjct: 39 MGEATENSHVEAAENHHNLLLTVIGDESKAREVKMYSYGKNINGFVARLFPHEAEKLSRE 98
Query: 61 ESVVSVFENTRRKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKG 120
E VVSVF+NT+R+LHTTR+WDFLG+ E KRS +SNIIVG+LDTGI V+SPSFNDKG
Sbjct: 99 EGVVSVFKNTQRQLHTTRSWDFLGLVESKYKRSVAIESNIIVGVLDTGIDVDSPSFNDKG 158
Query: 121 FGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTA 180
GPPPAKWKGKCVTG NFTRCN KV+GA+Y+ L P+ + S D DGHGTHTSST
Sbjct: 159 VGPPPAKWKGKCVTGNNFTRCNNKVLGAKYFRLQQEGLPDGEGDSAADYDGHGTHTSSTI 218
Query: 181 AGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISI 240
AG +V ASL+GIA GTARGGVPSARIA YKVCW GC DMD+LAAFD+AI DGVD+ISI
Sbjct: 219 AGVSVSSASLFGIANGTARGGVPSARIAAYKVCWDSGCTDMDMLAAFDEAISDGVDIISI 278
Query: 241 SIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRK 300
SIGG S +F+D I+IG+FHAMK+GILT CSAGN+GP TV N+APW+MTVAA+S+DRK
Sbjct: 279 SIGGASLPFFEDPIAIGAFHAMKRGILTMCSAGNNGPGLFTVSNLAPWVMTVAANSLDRK 338
Query: 301 FVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKV 360
F T VKLGNG+ SGIS+N F+PRK MYPLT+G+ A+N++A YG C+ GTL KV
Sbjct: 339 FETVVKLGNGLTASGISLNGFNPRKKMYPLTSGSLASNLSAGGYGEPSTCEPGTLGEDKV 398
Query: 361 KGKIVYC--------LGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGI 412
GK+VYC G QD+ + L+GAG IV + PTD+A +TLIAG++V E G
Sbjct: 399 MGKVVYCEAGREEGGNGGQGQDHVVRSLKGAGVIVQLLEPTDMATSTLIAGSYVFFEDGT 458
Query: 413 KIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAA 472
KI +YINSTKNPQAVI+KT+ AP I+SFS+RGPQ+I+ NILKPDI+APGL+ILAA
Sbjct: 459 KITEYINSTKNPQAVIFKTKTTKM-LAPSISSFSARGPQRISPNILKPDISAPGLNILAA 517
Query: 473 YSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532
YS+LASVTG P D R F+I+SGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT
Sbjct: 518 YSKLASVTGYPDDNRRTLFSIMSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 577
Query: 533 PMKTKSDDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIG---- 588
PM+ K ++AEL+ GSGQINP +A+HPGL+YD+ +Y RFLCKEGYNST+IG LIG
Sbjct: 578 PMRIKGNEAELSYGSGQINPRRAIHPGLVYDITEDAYLRFLCKEGYNSTSIGLLIGNNKN 637
Query: 589 ---RKKKLNCSTIRPAQGLDGLNYPSMHFHFTN-ESSISAIFRRTVTNVGFAKSLYKATV 644
KK+ C + G DGLNYPSMH T+ ++ +S +F RTV NVG+ S Y A V
Sbjct: 638 NTTTKKEYKCENFKRGLGSDGLNYPSMHKQVTSTDTKVSEVFYRTVRNVGYGPSTYVARV 697
Query: 645 HSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSM-QSGASILSALLEWSDTK-HSVKSPI 702
+PKGL V V P+V++F R + ++F V++ G ++ I+SA +EW D++ H V+SPI
Sbjct: 698 WAPKGLRVEVVPKVMSFERPGEKKNFKVVIDGVWDETMKGIVSASVEWDDSRGHVVRSPI 757
Query: 703 LVYK 706
L+++
Sbjct: 758 LLFR 761
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451257|ref|XP_004143378.1| PREDICTED: xylem serine proteinase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/711 (61%), Positives = 539/711 (75%), Gaps = 9/711 (1%)
Query: 1 MGNVPEEAGISAV-KEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSE 59
MG++P + + V +HH+LL AIGDEK+ARESKI SYGKSFNGF ARLLP EA +LS+
Sbjct: 37 MGDLPAGSPSTTVADDHHNLLLDAIGDEKIARESKIYSYGKSFNGFAARLLPDEATKLSD 96
Query: 60 EESVVSVFENTRRKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDK 119
EESVVSVFE+ ++++ TTR+W+FLG++ + KR+ +SN+IV + DTGIW++SPSF+D+
Sbjct: 97 EESVVSVFESRKKRVLTTRSWEFLGLNHQYSKRNPLIESNLIVAVFDTGIWIDSPSFSDE 156
Query: 120 GFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST 179
G+GPPP KWKGKCVTG NFT CN KVIGA Y++LD + + S DTDGHG+H +ST
Sbjct: 157 GYGPPPPKWKGKCVTGPNFTACNNKVIGANYFDLDKVT--SYPELSVADTDGHGSHIAST 214
Query: 180 AAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLIS 239
AG V GASLYG+A+GTARGGVPSARIA+YKVCWS C +MD+LAAFD+AI DGVDLIS
Sbjct: 215 VAGSAVAGASLYGLAKGTARGGVPSARIAVYKVCWSVFCNEMDVLAAFDEAIADGVDLIS 274
Query: 240 ISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDR 299
+SIG P +F D +IG+FHAMKKGILT +AGNDGP TVENVAPWIMTVAA+ IDR
Sbjct: 275 VSIGSPPMDFFRDGQAIGAFHAMKKGILTTTAAGNDGPELFTVENVAPWIMTVAATGIDR 334
Query: 300 KFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAA-NVTAEIYGNVGACDYGTLSMK 358
FVTA +LGNG + +G SINTFSP+K M+ LT+GA+AA N GN ACD ++
Sbjct: 335 GFVTAFELGNGNKFTGGSINTFSPQKQMHSLTSGAKAAFNNGTPHQGNASACDPNAMNQS 394
Query: 359 KVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYI 418
KVKGKIVYCL + + D +I L G G I TD + L+ G + G ID YI
Sbjct: 395 KVKGKIVYCLKTYT-DPSIKSLGGTGVIQLTQQQTDYSSILLLPGATIPSVSGKYIDLYI 453
Query: 419 NSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELAS 478
NSTKNP+AVIYK+ V APF+ASFSSRGPQ+I+ NILKPD++APG+DILAAY++LA+
Sbjct: 454 NSTKNPKAVIYKSETVKID-APFVASFSSRGPQRISSNILKPDLSAPGIDILAAYTKLAT 512
Query: 479 VTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKS 538
+TG D R F ++SGTSMAC HA AAAAYVKSFHPDWSPAA+KSALMTTATPMK KS
Sbjct: 513 LTGDTSDSRYSFFTVMSGTSMACSHATAAAAYVKSFHPDWSPAAVKSALMTTATPMKIKS 572
Query: 539 DDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNCSTI 598
+D L SG+GQINPTKAVHPGL+Y+++ SY FLCKEGYN+T IG L+G KK NCS I
Sbjct: 573 EDVVLGSGAGQINPTKAVHPGLVYNISFDSYISFLCKEGYNNTTIG-LLGGSKKYNCSKI 631
Query: 599 RPAQGLDGLNYPSMHFHFTNESS-ISAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPR 657
+PAQG DGLNYP+MH ++ SS I A+F RTVT+VG+ SLY+A + SP LSV V P
Sbjct: 632 KPAQGTDGLNYPTMHKQLSDPSSAIEAVFYRTVTHVGYGASLYRANISSPDSLSVKVFPD 691
Query: 658 VLTFSRSQQTRSFTVLVKGS-MQSGASILSALLEWSDTKHSVKSPILVYKQ 707
L F + +TR+F V+VKG M G ILSALLEW+D+KH V+S IL+Y++
Sbjct: 692 TLNFVKLHETRTFKVVVKGKPMPKGTQILSALLEWTDSKHIVRSNILIYRE 742
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463008|ref|XP_004149226.1| PREDICTED: LOW QUALITY PROTEIN: xylem serine proteinase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/716 (58%), Positives = 521/716 (72%), Gaps = 22/716 (3%)
Query: 1 MGNVPE-EAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSE 59
MG +P+ E+ HHSLL A+GDE++AR++KI SYG+SFNGF ARL PHEA +L++
Sbjct: 37 MGALPKLESHEVLSDHHHSLLANAVGDEEMARKAKIHSYGRSFNGFAARLSPHEANKLAK 96
Query: 60 EESVVSVFENTRRKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDK 119
E+ VVSVF + RKLHTTR+WDFLG+SE + +R++ A+SN+IVGLLD+GIW+E PSF D
Sbjct: 97 EKKVVSVFRSKTRKLHTTRSWDFLGLSEAVSRRNAAAESNVIVGLLDSGIWMEGPSFKDD 156
Query: 120 GFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNL---DNALDPNTDQKSPVDTDGHGTHT 176
G+G P+KWKGKCVTG NFT CN+KVIGAR++++ DN++D KSP D GHG+HT
Sbjct: 157 GYGEIPSKWKGKCVTGRNFTSCNRKVIGARFFDIGQIDNSID-----KSPADEIGHGSHT 211
Query: 177 SSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVD 236
+ST AG +V GAS YG+A GTARGGVP ARIAMYKVCW GC+D+D+LA FD AI DGVD
Sbjct: 212 ASTIAGASVDGASFYGVAGGTARGGVPGARIAMYKVCWVDGCSDVDLLAGFDHAIADGVD 271
Query: 237 LISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASS 296
+IS+SIGG S +F+D I+IGSFHAM+KGILT+CSAGN GP TVEN APWIMTVAAS+
Sbjct: 272 IISVSIGGESTEFFNDPIAIGSFHAMEKGILTSCSAGNSGPELKTVENTAPWIMTVAAST 331
Query: 297 IDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAA-NVTAEIYGNVGACDYGTL 355
IDR F T VKLGN + SG+S+NTF+P+K MYPL +G+ AA ++ Y + CD GTL
Sbjct: 332 IDRDFSTVVKLGNNKKLSGVSVNTFTPKKQMYPLISGSNAALPNQSDPYLDPSWCDSGTL 391
Query: 356 SMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKID 415
KKVKGKIVYCLGS Q+YTI L G G I + ++ AI T I T + ++
Sbjct: 392 DEKKVKGKIVYCLGSMDQEYTISELGGKGVISNLMNVSETAITTPIPSTHLSSTNSDYVE 451
Query: 416 QYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSE 475
YINSTKNP+AVIYKT AP++ASFSS+GPQ I LNILKPDIAAPG++ILAAYS
Sbjct: 452 AYINSTKNPKAVIYKTTTRKVD-APYLASFSSKGPQTIALNILKPDIAAPGVNILAAYSN 510
Query: 476 LASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMK 535
LAS+T + R FN+LSGTSM P AAAAAY+K+FHP WSPAA+KSALMTTATP+K
Sbjct: 511 LASIT----NNRHSLFNLLSGTSMX-PQPAAAAAYLKAFHPTWSPAALKSALMTTATPLK 565
Query: 536 TKSDDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNS---TAIGRLIGRKKK 592
+ +G+GQINP KAVHPGLIYDL +SY FLC S +A+ L G
Sbjct: 566 IGDKLDVIGAGTGQINPIKAVHPGLIYDLTRTSYLSFLCTNKRYSDSGSALAILTG-DTS 624
Query: 593 LNCSTIRPAQGLDGLNYPSMHFHFT-NESSISAIFRRTVTNVGFAKSLYKATVHSPKGLS 651
LNCS + A G D +NYPSM+ N +S+SA+F RTVT+VGF S Y A V SP GLS
Sbjct: 625 LNCSDVPRASGFDAINYPSMYVPVDRNATSVSAVFHRTVTHVGFGPSTYIAKVKSPAGLS 684
Query: 652 VTVSPRVLTFSRSQQTRSFTVLVKGSMQS-GASILSALLEWSDTKHSVKSPILVYK 706
V VSP L F R+ + SF V+VKG+ + G + L+A LEW D+KH V+SPILV+K
Sbjct: 685 VKVSPDTLKFDRAYKKLSFKVVVKGAAPAVGQAPLTASLEWDDSKHYVRSPILVFK 740
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 712 | ||||||
| TAIR|locus:2144583 | 766 | AT5G03620 "AT5G03620" [Arabido | 0.990 | 0.920 | 0.603 | 4.6e-231 | |
| TAIR|locus:2126896 | 749 | XSP1 "AT4G00230" [Arabidopsis | 0.981 | 0.933 | 0.524 | 3.3e-189 | |
| TAIR|locus:2168524 | 693 | AT5G59190 "AT5G59190" [Arabido | 0.963 | 0.989 | 0.466 | 1.6e-157 | |
| TAIR|locus:2153291 | 736 | SBT4.12 "AT5G59090" [Arabidops | 0.957 | 0.926 | 0.448 | 1.7e-146 | |
| TAIR|locus:2168434 | 732 | SBT4.13 "AT5G59120" [Arabidops | 0.960 | 0.934 | 0.434 | 6.6e-145 | |
| TAIR|locus:2154528 | 713 | AT5G58840 "AT5G58840" [Arabido | 0.453 | 0.453 | 0.508 | 1.8e-144 | |
| TAIR|locus:2102792 | 738 | AT3G46840 "AT3G46840" [Arabido | 0.963 | 0.929 | 0.446 | 7.5e-144 | |
| TAIR|locus:2153296 | 741 | AT5G59100 "AT5G59100" [Arabido | 0.971 | 0.933 | 0.438 | 3.3e-143 | |
| TAIR|locus:2102807 | 736 | AT3G46850 "AT3G46850" [Arabido | 0.966 | 0.934 | 0.429 | 6.1e-142 | |
| TAIR|locus:2154503 | 703 | AT5G58820 "AT5G58820" [Arabido | 0.449 | 0.455 | 0.494 | 2.4e-138 |
| TAIR|locus:2144583 AT5G03620 "AT5G03620" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2229 (789.7 bits), Expect = 4.6e-231, P = 4.6e-231
Identities = 436/723 (60%), Positives = 541/723 (74%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLXXX 60
MG E + + A + HH+LL T IGDE ARE KI SYGK+ NGFVARL PHEA++L
Sbjct: 39 MGEATENSLVEAAENHHNLLMTVIGDESKARELKIYSYGKNINGFVARLFPHEAEKLSRE 98
Query: 61 XXXXXXFENTRRKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKG 120
F+NT+R+LHTTR+WDFLG+ E KRS +SNIIVG+LDTGI VESPSFNDKG
Sbjct: 99 EGVVSVFKNTQRQLHTTRSWDFLGLVESKYKRSVGIESNIIVGVLDTGIDVESPSFNDKG 158
Query: 121 FGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTA 180
GPPPAKWKGKCVTG NFTRCN KVIGA+Y+++ + P+ + + D DGHGTHTSST
Sbjct: 159 VGPPPAKWKGKCVTGNNFTRCNNKVIGAKYFHIQSEGLPDGEGDTAADHDGHGTHTSSTI 218
Query: 181 AGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISI 240
AG +V ASL+GIA GTARGGVPSARIA YKVCW GC DMD+LAAFD+AI DGVD+ISI
Sbjct: 219 AGVSVSSASLFGIANGTARGGVPSARIAAYKVCWDSGCTDMDMLAAFDEAISDGVDIISI 278
Query: 241 SIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRK 300
SIGG S +F+D I+IG+FHAMK+GILT CSAGN+GP TV N+APW+MTVAA+S+DRK
Sbjct: 279 SIGGASLPFFEDPIAIGAFHAMKRGILTTCSAGNNGPGLFTVSNLAPWVMTVAANSLDRK 338
Query: 301 FVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKV 360
F T VKLGNG+ SGIS+N F+PRK MYPLT+G+ A+N++A YG C+ GTL KV
Sbjct: 339 FETVVKLGNGLTASGISLNGFNPRKKMYPLTSGSLASNLSAGGYGEPSTCEPGTLGEDKV 398
Query: 361 KGKIVYCL------GSGSQ--DYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGI 412
GK+VYC G+G Q D+ + L+GAG IV + PTD+A +TLIAG++V E G
Sbjct: 399 MGKVVYCEAGREEGGNGGQGQDHVVRSLKGAGVIVQLLEPTDMATSTLIAGSYVFFEDGT 458
Query: 413 KIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAA 472
KI +YINSTKNPQAVI+KT+ AP I+SFS+RGPQ+I+ NILKPDI+APGL+ILAA
Sbjct: 459 KITEYINSTKNPQAVIFKTKTTKM-LAPSISSFSARGPQRISPNILKPDISAPGLNILAA 517
Query: 473 YSELASVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSPAAIKSALMTTAT 532
YS+LASVTG P D R F+I+SGTSMACPH YVKSFHPDWSPAAIKSALMTTAT
Sbjct: 518 YSKLASVTGYPDDNRRTLFSIMSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 577
Query: 533 PMKTKSDDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIG---- 588
PM+ K ++AEL+ GSGQINP +A+HPGL+YD+ +Y RFLCKEGYNST+IG L G
Sbjct: 578 PMRIKGNEAELSYGSGQINPRRAIHPGLVYDITEDAYLRFLCKEGYNSTSIGLLTGDNSN 637
Query: 589 --RKKKLNCSTIRPAQGLDGLNYPSMHFHFTN-ESSISAIFRRTVTNVGFAKSLYKATVH 645
KK+ NC I+ G DGLNYPS+H + E+ +S +F RTVTNVG+ S Y A V
Sbjct: 638 NTTKKEYNCENIKRGLGSDGLNYPSLHKQVNSTEAKVSEVFYRTVTNVGYGPSTYVARVW 697
Query: 646 SPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSM-QSGASILSALLEWSDTK-HSVKSPIL 703
+PKGL V V P+V++F R ++ R+F V++ G ++ I+SA +EW D++ H V+SPIL
Sbjct: 698 APKGLRVEVVPKVMSFERPKEKRNFKVVIDGVWDETMKGIVSASVEWDDSRGHLVRSPIL 757
Query: 704 VYK 706
+++
Sbjct: 758 LFR 760
|
|
| TAIR|locus:2126896 XSP1 "AT4G00230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1834 (650.7 bits), Expect = 3.3e-189, P = 3.3e-189
Identities = 372/709 (52%), Positives = 478/709 (67%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLXXX 60
+G+ P+ +K H +LL++ ++ A+E K+ SY K+FN F A+L PHEAK++
Sbjct: 42 LGDRPDNTE-ETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKMMEM 100
Query: 61 XXXXXXFENTRRKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKG 120
N RKLHTT++WDF+G+ KR KA+ ++I+G+LDTGI +S SF D G
Sbjct: 101 EEVVSVSRNQYRKLHTTKSWDFVGLP-LTAKRHLKAERDVIIGVLDTGITPDSESFLDHG 159
Query: 121 FGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTA 180
GPPPAKWKG C NFT CN K+IGA+Y+ D + P + +SP+D DGHGTHTSST
Sbjct: 160 LGPPPAKWKGSCGPYKNFTGCNNKIIGAKYFKHDGNV-PAGEVRSPIDIDGHGTHTSSTV 218
Query: 181 AGETVKGASLYGIAQGTARGGVPSARIAMYKVCWS-GGCADMDILAAFDDAIGDGVDLIS 239
AG V ASLYGIA GTARG VPSAR+AMYKVCW+ GCADMDILA F+ AI DGV++IS
Sbjct: 219 AGVLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEIIS 278
Query: 240 ISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDR 299
ISIGGP Y DSIS+GSFHAM+KGILT SAGNDGP GTV N PWI+TVAAS IDR
Sbjct: 279 ISIGGPIADYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDR 338
Query: 300 KFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKK 359
F + + LGNG SG+ I+ FSP+ YPL +G AA T + Y C +L KK
Sbjct: 339 TFKSKIDLGNGKSFSGMGISMFSPKAKSYPLVSGVDAAKNTDDKY-LARYCFSDSLDRKK 397
Query: 360 VKGKIVYC-LGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYI 418
VKGK++ C +G G + TI GAG I+ D D A + T V VG I +YI
Sbjct: 398 VKGKVMVCRMGGGGVESTIKSYGGAGAIIVSDQYLDNAQIFMAPATSVNSSVGDIIYRYI 457
Query: 419 NSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELAS 478
NST++ AVI KTR V T APF+ASFSSRGP ++ +LKPDIAAPG+DILAA++ S
Sbjct: 458 NSTRSASAVIQKTRQV-TIPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRS 516
Query: 479 VTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSPAAIKSALMTTATPMKTK- 537
+TGL GD + F ILSGTSMACPH YVKSFHPDW+PAAIKSA++T+A P+ +
Sbjct: 517 LTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRRV 576
Query: 538 SDDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNCST 597
+ DAE A G GQINP +A PGL+YD++ SY +FLC EGYN+T + L+G + ++CS+
Sbjct: 577 NKDAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRS-VSCSS 635
Query: 598 IRPAQGLDGLNYPSMHFHFTN-ESSISAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSP 656
I P G D LNYP++ + ++S A+FRR VTNVG S+Y ATV +PKG+ +TV P
Sbjct: 636 IVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEP 695
Query: 657 RVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSDTKHSVKSPILVY 705
+ L+FS++ Q RSF V+VK + I+S LL W +HSV+SPI++Y
Sbjct: 696 QSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVIY 744
|
|
| TAIR|locus:2168524 AT5G59190 "AT5G59190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1535 (545.4 bits), Expect = 1.6e-157, P = 1.6e-157
Identities = 334/716 (46%), Positives = 442/716 (61%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLXXX 60
MG +PE S H S+L +G A +RSY +SFNGF A L E+++L
Sbjct: 1 MGTLPE-IKYSPPSHHLSILQKLVGTIA-ASHLLVRSYKRSFNGFAANLSQAESQKLQNM 58
Query: 61 XXXXXXFENTRRKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKG 120
F + +L TTR+WDF+G EK ++ S K +S++IVG++D+GIW ES SF+D+G
Sbjct: 59 KEVVSVFPSKSHELTTTRSWDFVGFGEKARRESVK-ESDVIVGVIDSGIWPESESFDDEG 117
Query: 121 FGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTA 180
FGPPP KWKG C G F CN K+IGAR+YN D S D +GHGTHT+STA
Sbjct: 118 FGPPPKKWKGSCKGGLKFA-CNNKLIGARFYN--KFAD------SARDEEGHGTHTASTA 168
Query: 181 AGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISI 240
AG V+ AS YG+AQGTARGGVPSARIA YKVC++ C D+DILAAFDDAI DGVD+ISI
Sbjct: 169 AGNAVQAASFYGLAQGTARGGVPSARIAAYKVCFNR-CNDVDILAAFDDAIADGVDVISI 227
Query: 241 SIGGPSRS-YFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDR 299
SI S + S++IGSFHAM +GI+TA SAGN+GP QG+V NV+PW++TVAAS DR
Sbjct: 228 SISADYVSNLLNASVAIGSFHAMMRGIITAGSAGNNGPDQGSVANVSPWMITVAASGTDR 287
Query: 300 KFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKK 359
+F+ V LGNG +GIS+NTF+ +P+ G + ++ G C G + +
Sbjct: 288 QFIDRVVLGNGKALTGISVNTFNLNGTKFPIVYGQNVSRNCSQ--AQAGYCSSGCVDSEL 345
Query: 360 VKGKIVYCLGSGSQDYTIDRLQGA-GTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYI 418
VKGKIV C Y L GA G IV D A + + E I YI
Sbjct: 346 VKGKIVLC--DDFLGYREAYLAGAIGVIVQNTLLPDSAFVVPFPASSLGFEDYKSIKSYI 403
Query: 419 NSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELAS 478
S + PQA I +T + AP++ SFSSRGP + N+LKPD++APGL+ILAA+S +AS
Sbjct: 404 ESAEPPQAEILRTEEIVDREAPYVPSFSSRGPSFVIQNLLKPDVSAPGLEILAAFSPVAS 463
Query: 479 VTGL--PGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSPAAIKSALMTTATPMKT 536
+ P D+R V ++++SGTSMACPH YVKSFHPDWSP+AIKSA+MTTATPM
Sbjct: 464 PSSFLNPEDKRSVRYSVMSGTSMACPHVAGVAAYVKSFHPDWSPSAIKSAIMTTATPMNL 523
Query: 537 KSD-DAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNC 595
K + + E A GSGQINPTKA PGL+Y++ Y + LC EG++ST + G+ + C
Sbjct: 524 KKNPEQEFAYGSGQINPTKASDPGLVYEVETEDYLKMLCAEGFDSTTLTTTSGQN--VTC 581
Query: 596 STIRPAQGLDGLNYPSMHFHFTNESSISAIFRRTVTNVGFAKSLYKATVH--SPKGLSVT 653
S + L NYP+M ++ + F+RTVTNVGF S YKA+V P+ L ++
Sbjct: 582 SERTEVKDL---NYPTMTTFVSSLDPFNVTFKRTVTNVGFPNSTYKASVVPLQPE-LQIS 637
Query: 654 VSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSDTKHSVKSPILVYKQFP 709
+ P +L F ++ +SF V + G S +S+ + WSD HSV+SPI+ Y P
Sbjct: 638 IEPEILRFGFLEEKKSFVVTISGKELKDGSFVSSSVVWSDGSHSVRSPIVAYSIQP 693
|
|
| TAIR|locus:2153291 SBT4.12 "AT5G59090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1431 (508.8 bits), Expect = 1.7e-146, P = 1.7e-146
Identities = 321/716 (44%), Positives = 420/716 (58%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESK-IRSYGKSFNGFVARLLPHEAKRLXX 59
MG++ A +H S+L G+ + E + +RSY +SFNGF ARL E +
Sbjct: 37 MGSLSSRADYIPTSDHMSILQQVTGESSI--EGRLVRSYKRSFNGFAARLTESERTLIAE 94
Query: 60 XXXXXXXFENTRRKLHTTRTWDFLGMSE-KLQKRSSKAQSNIIVGLLDTGIWVESPSFND 118
F N +LHTT +WDF+G+ E K KR+ +S+ I+G++DTGIW ES SF+D
Sbjct: 95 IEGVVSVFPNKILQLHTTTSWDFMGVKEGKNTKRNLAIESDTIIGVIDTGIWPESKSFSD 154
Query: 119 KGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSS 178
KGFGPPP KWKG C G NFT CN K+IGAR Y + D T GHGTHT+S
Sbjct: 155 KGFGPPPKKWKGVCSGGKNFT-CNNKLIGARDYTSEGTRD----------TSGHGTHTAS 203
Query: 179 TAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLI 238
TAAG VK S +GI GT RGGVP++RIA YKVC GC+ +L++FDDAI DGVDLI
Sbjct: 204 TAAGNAVKDTSFFGIGNGTVRGGVPASRIAAYKVCTDSGCSSEALLSSFDDAIADGVDLI 263
Query: 239 SISIGGPSRSYF-DDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSI 297
+ISIG S F DD I+IG+FHAM KGILT SAGN GP TV +VAPWI TVAAS+
Sbjct: 264 TISIGFQFPSIFEDDPIAIGAFHAMAKGILTVSSAGNSGPKPTTVSHVAPWIFTVAASTT 323
Query: 298 DRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSM 357
+R F+T V LGNG +G S+N F + YPL G AA+ + C L+
Sbjct: 324 NRGFITKVVLGNGKTLAGRSVNAFDMKGKKYPLVYGKSAASSACDAK-TAALCAPACLNK 382
Query: 358 KKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQY 417
+VKGKI+ C G Y I + GA I+ D+A + + + + + Y
Sbjct: 383 SRVKGKILVC--GGPSGYKIAKSVGAIAIIDKSPRPDVAFTHHLPASGLKAKDFKSLVSY 440
Query: 418 INSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELA 477
I S +PQA + KT + T+P IASFSSRGP I ++ILKPDI APG++ILAA+S
Sbjct: 441 IESQDSPQAAVLKTETIFNRTSPVIASFSSRGPNTIAVDILKPDITAPGVEILAAFSP-- 498
Query: 478 SVTGLPG--DRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSPAAIKSALMTTATPMK 535
G P D R V +++ SGTSMACPH YVK+F+P WSP+ I+SA+MTTA P+K
Sbjct: 499 --NGEPSEDDTRRVKYSVFSGTSMACPHVAGVAAYVKTFYPRWSPSMIQSAIMTTAWPVK 556
Query: 536 TKSD---DAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKK 592
K E A G+G ++P A++PGL+Y+L+ + + FLC Y S + + G K
Sbjct: 557 AKGRGIASTEFAYGAGHVDPMAALNPGLVYELDKADHIAFLCGMNYTSKTLKIISGDTVK 616
Query: 593 LNCSTIRPAQGLDGLNYPSMHFHFTN-ESSISAIFRRTVTNVGFAKSLYKATVHSPKG-- 649
CS + LNYPSM + +S+ S F RT+TNVG S YK+ V + G
Sbjct: 617 --CSKKNKILPRN-LNYPSMSAKLSGTDSTFSVTFNRTLTNVGTPNSTYKSKVVAGHGSK 673
Query: 650 LSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSDTKHSVKSPILVY 705
LS+ V+P VL F + +SF+V V GS SA L WSD H+V+SPI+VY
Sbjct: 674 LSIKVTPSVLYFKTVNEKQSFSVTVTGSDVDSEVPSSANLIWSDGTHNVRSPIVVY 729
|
|
| TAIR|locus:2168434 SBT4.13 "AT5G59120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1416 (503.5 bits), Expect = 6.6e-145, P = 6.6e-145
Identities = 310/714 (43%), Positives = 425/714 (59%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESK-IRSYGKSFNGFVARLLPHEAKRLXX 59
MG++ A + +H ++L G+ + E + +RSY +SFNGF ARL E +R+
Sbjct: 36 MGSLSSRADYTPTSDHMNILQEVTGESSI--EGRLVRSYKRSFNGFAARLTESERERVAK 93
Query: 60 XXXXXXXFENTRRKLHTTRTWDFLGMSEKLQ-KRSSKAQSNIIVGLLDTGIWVESPSFND 118
F N + +L TT +WDF+G+ E ++ KR+ +S+ I+G++D+GI ES SF+D
Sbjct: 94 MVGVVSVFPNKKLQLQTTTSWDFMGLKEGIKTKRNPTVESDTIIGVIDSGITPESQSFSD 153
Query: 119 KGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSS 178
KGFGPPP KWKG C G NFT CN K+IGAR Y + D DGHGTHT+S
Sbjct: 154 KGFGPPPQKWKGVCSGGKNFT-CNNKLIGARDYTSEGTRD----------MDGHGTHTAS 202
Query: 179 TAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLI 238
TAAG V AS +GI GT RGGVP++R+A YKVC GC+ +L+AFDDAI DGVDLI
Sbjct: 203 TAAGNAVVDASFFGIGNGTVRGGVPASRVAAYKVCTPTGCSSEALLSAFDDAIADGVDLI 262
Query: 239 SISIGGPSRSYF-DDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSI 297
+ISIG + S F +D I+IG+FHAM KG+LT SAGN GP +V VAPWI+TVAAS+
Sbjct: 263 TISIGDKTASMFQNDPIAIGAFHAMAKGVLTVNSAGNSGPKPISVSGVAPWILTVAASTT 322
Query: 298 DRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSM 357
+R FVT V LGNG G S+N + + YPL G AA+ + + G C+ +
Sbjct: 323 NRGFVTKVVLGNGKTLVGKSVNAYEMKGKDYPLVYGKSAASSACDAE-SAGLCELSCVDK 381
Query: 358 KKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQY 417
+VKGKI+ C G G ++ + G I P D+A + ++ E + Y
Sbjct: 382 SRVKGKILVCGGPGGLKI-VESVGAVGLIYRTPKP-DVAFIHPLPAAGLLTEDFESLVSY 439
Query: 418 INSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELA 477
+ ST +PQA++ KT + T+P IASFSSRGP I ++ILKPDI APG++ILAAYS
Sbjct: 440 LESTDSPQAIVLKTEAIFNRTSPVIASFSSRGPNTIAVDILKPDITAPGVEILAAYSPAG 499
Query: 478 SVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSPAAIKSALMTTATPMK-- 535
+ D R V +++LSGTSM+CPH YVK+F+P WSP+ I+SA+MTTA P+
Sbjct: 500 EPS--QDDTRHVKYSVLSGTSMSCPHVAGVAAYVKTFNPKWSPSMIQSAIMTTAWPVNAT 557
Query: 536 -TKSDDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLN 594
T E A GSG ++P A +PGL+Y+L+ S + FLC Y S + + G + +
Sbjct: 558 GTGIASTEFAYGSGHVDPIAASNPGLVYELDKSDHIAFLCGMNYTSQVLKVISG--ETVT 615
Query: 595 CSTIRPAQGLDGLNYPSMHFHFTNE-SSISAIFRRTVTNVGFAKSLYKATVHSPKG--LS 651
CS + + LNYPSM + ++ + F RT+TNVG S Y + V + G L
Sbjct: 616 CSEAKKILPRN-LNYPSMSAKLSGSGTTFTVTFNRTLTNVGTPNSTYTSKVVAGHGSKLD 674
Query: 652 VTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSDTKHSVKSPILVY 705
V ++P VL+F + +SFTV V GS SA L WSD H+V+SPI+VY
Sbjct: 675 VKITPSVLSFKTVNEKQSFTVTVTGSNLDSEVPSSANLIWSDGTHNVRSPIVVY 728
|
|
| TAIR|locus:2154528 AT5G58840 "AT5G58840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 810 (290.2 bits), Expect = 1.8e-144, Sum P(2) = 1.8e-144
Identities = 171/336 (50%), Positives = 209/336 (62%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLXXX 60
MG++P HH + + E +RSY +SFNGF ARL E +R+
Sbjct: 39 MGSLPSSRLEYTPMSHHMSILQEVTGESSVEGRLVRSYKRSFNGFAARLTESERERVAEM 98
Query: 61 XXXXXXFENTRRKLHTTRTWDFLGMSE-KLQKRSSKAQSNIIVGLLDTGIWVESPSFNDK 119
F + KL TT +WDFLG+ E K KR+ +S+ I+G +D+GIW ES SF+DK
Sbjct: 99 EGVVSVFPDINYKLQTTASWDFLGLKEGKNTKRNLAIESDTIIGFIDSGIWPESESFSDK 158
Query: 120 GFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST 179
GFGPPP KWKG C G NFT CN K+IGAR Y N + D +GHGTHT+ST
Sbjct: 159 GFGPPPKKWKGVCSAGKNFT-CNNKLIGARDYT-------NEGTR---DIEGHGTHTAST 207
Query: 180 AAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLIS 239
AAG VK S YGI GTARGGVP++RIA YK C GC +L+AFDDAI DGVDLIS
Sbjct: 208 AAGNAVKNTSFYGIGNGTARGGVPASRIAAYKACSEMGCTTESVLSAFDDAIADGVDLIS 267
Query: 240 ISIGGPS-RSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSID 298
IS+G R+Y D I+IG+FHAM KGILT SAGN GP G+V +VAPWI+TVAAS+ +
Sbjct: 268 ISLGANLVRTYETDPIAIGAFHAMVKGILTVQSAGNGGPNPGSVMSVAPWILTVAASNTN 327
Query: 299 RKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGA 334
R FVT V LGNG G S+N F + YPL G+
Sbjct: 328 RGFVTKVVLGNGKTFVGKSLNAFDLKGKNYPLYGGS 363
|
|
| TAIR|locus:2102792 AT3G46840 "AT3G46840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1406 (500.0 bits), Expect = 7.5e-144, P = 7.5e-144
Identities = 320/716 (44%), Positives = 420/716 (58%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLXXX 60
MG +P + H S+L G+ + + +R+Y +SFNGF ARL E + L
Sbjct: 39 MGALPARVDYMPMSHHTSILQDVTGESSI-EDRLVRNYKRSFNGFAARLTKSEREILASM 97
Query: 61 XXXXXXFENTRRKLHTTRTWDFLGMSE-KLQKRSSKAQSNIIVGLLDTGIWVESPSFNDK 119
F N + KL TT +W+F+G+ E K KR++ +S+ I+G++D+GI+ ES SF+ K
Sbjct: 98 DEVVSVFPNKKLKLQTTTSWNFMGLKESKRTKRNTIIESDTIIGVIDSGIYPESDSFSGK 157
Query: 120 GFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST 179
GFGPPP KWKG C G NFT N K+IGARYY P +S D GHG+HT+ST
Sbjct: 158 GFGPPPKKWKGVCKGGKNFT-WNNKLIGARYYTPKLEGFP----ESARDYMGHGSHTAST 212
Query: 180 AAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSG--GCADMDILAAFDDAIGDGVDL 237
AAG VK S YG+ GTARGGVP+ARIA+YKVC G GC ILAAFDDAI D VD+
Sbjct: 213 AAGNAVKHVSFYGLGNGTARGGVPAARIAVYKVCDPGVDGCTTDGILAAFDDAIADKVDI 272
Query: 238 ISISIGGPSRSYFD-DSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASS 296
I+ISIGG + S F+ D I+IG+FHAM KGIL SAGN GP TV ++APW+ TVAAS+
Sbjct: 273 ITISIGGDNSSPFEEDPIAIGAFHAMAKGILIVNSAGNSGPEPSTVASIAPWMFTVAASN 332
Query: 297 IDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLS 356
+R FVT V LGNG +T G S+N+F YPL G A++ + G C G L
Sbjct: 333 TNRAFVTKVVLGNG-KTVGRSVNSFDLNGKKYPLVYGKSASSSCGA--ASAGFCSPGCLD 389
Query: 357 MKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAV--DAPTDIAIATLIAGTFVVPEVGIKI 414
K+VKGKIV C D Q G I ++ TD+A + ++ + +
Sbjct: 390 SKRVKGKIVLC----DSPQNPDEAQAMGAIASIVRSHRTDVASIFSFPVSVLLEDDYNTV 445
Query: 415 DQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYS 474
Y+NSTKNP+A + K+ + AP +AS+ SRGP I +ILKPDI APG +I+AAYS
Sbjct: 446 LSYMNSTKNPKAAVLKSETIFNQRAPVVASYFSRGPNTIIPDILKPDITAPGSEIVAAYS 505
Query: 475 ELASVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
A + D R V +++ +GTSM+CPH Y+KSFHP WSP+ I+SA+MTTA PM
Sbjct: 506 PDAPPS--ISDTRRVKYSVDTGTSMSCPHVAGVAAYLKSFHPRWSPSMIQSAIMTTAWPM 563
Query: 535 KTKSDD----AELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIG-RLIGR 589
+ AE A G+G ++P A+HPGL+Y+ N S + FLC G N TA RLI
Sbjct: 564 NASTSPFNELAEFAYGAGHVDPITAIHPGLVYEANKSDHIAFLC--GLNYTAKNLRLISG 621
Query: 590 KKKLNCSTIRPAQGLDGLNYPSMHFHFTNESSISAIFRRTVTNVGFAKSLYKATVHSPKG 649
+C+ + LNYPSM + IFRRTVTNVG + YKA V K
Sbjct: 622 DSS-SCTKEQTKSLPRNLNYPSMTAQVSAAKPFKVIFRRTVTNVGRPNATYKAKVVGSK- 679
Query: 650 LSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSDTKHSVKSPILVY 705
L V V P VL+ + +SFTV G+ +++SA L WSD H V+SPI+VY
Sbjct: 680 LKVKVVPAVLSLKSLYEKKSFTVTASGAGPKAENLVSAQLIWSDGVHFVRSPIVVY 735
|
|
| TAIR|locus:2153296 AT5G59100 "AT5G59100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1400 (497.9 bits), Expect = 3.3e-143, P = 3.3e-143
Identities = 313/713 (43%), Positives = 419/713 (58%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLXXX 60
+G++P + + +H S+L G E L +RSY KSFNGF ARL E KRL
Sbjct: 39 LGSLPSREEYTPMSDHMSILQEITG-ESLIENRLVRSYKKSFNGFAARLTESERKRLAGM 97
Query: 61 XXXXXXFENTRRKLHTTRTWDFLGMSEKLQ-KRSSKAQSNIIVGLLDTGIWVESPSFNDK 119
F + + KL TT +W+F+G+ E ++ KR+ +S+ I+G++D+GI+ ES SF+D+
Sbjct: 98 ERVVSVFPSRKLKLQTTSSWNFMGLKEGIKTKRTRSIESDTIIGVIDSGIYPESDSFSDQ 157
Query: 120 GFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST 179
GFGPPP KWKG C G NFT CN KVIGAR Y + + ++ D GHGTHT+S
Sbjct: 158 GFGPPPKKWKGTCAGGKNFT-CNNKVIGARDYTAKSKAN-----QTARDYSGHGTHTASI 211
Query: 180 AAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLIS 239
AAG V ++ YG+ GTARGGVP+ARIA+YKVC + GC +++AFDDAI DGVD+IS
Sbjct: 212 AAGNAVANSNFYGLGNGTARGGVPAARIAVYKVCDNEGCDGEAMMSAFDDAIADGVDVIS 271
Query: 240 ISIGGPSRSYFD-DSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSID 298
ISI + F+ D I+IG+FHAM G+LT +AGN+GP TV + APW+ +VAAS +
Sbjct: 272 ISIVLDNIPPFEEDPIAIGAFHAMAVGVLTVNAAGNNGPKISTVTSTAPWVFSVAASVTN 331
Query: 299 RKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMK 358
R F+ V LG+G G S+NT+ YPL G AA T + C+ L K
Sbjct: 332 RAFMAKVVLGDGKILIGRSVNTYDMNGTNYPLVYGKSAALSTCSV-DKARLCEPKCLDGK 390
Query: 359 KVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYI 418
VKGKIV C S +L G+IV P D A +F+ + + Y+
Sbjct: 391 LVKGKIVLC-DSTKGLIEAQKLGAVGSIVKNPEP-DRAFIRSFPVSFLSNDDYKSLVSYM 448
Query: 419 NSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELAS 478
NSTKNP+A + K+ ++ AP +ASFSSRGP I +ILKPDI APG++ILAAYS +S
Sbjct: 449 NSTKNPKATVLKSEEISNQRAPLVASFSSRGPSSIVSDILKPDITAPGVEILAAYSPDSS 508
Query: 479 VTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSPAAIKSALMTTATPMKTKS 538
T D R V +++LSGTSMACPH YVK+FHP WSP+ I+SA+MTTA PM
Sbjct: 509 PTESEFDTRRVKYSVLSGTSMACPHVAGVAAYVKTFHPQWSPSMIQSAIMTTAWPMNASG 568
Query: 539 D---DAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNC 595
E A GSG ++P A++PGL+Y+L + + FLC Y S + R+I C
Sbjct: 569 SGFVSTEFAYGSGHVDPIDAINPGLVYELTKADHINFLCGLNYTSDHL-RIISGDNS-TC 626
Query: 596 STIRPAQGLD-GLNYPSMHFHFTNESSISAIFRRTVTNVGFAKSLYKATVHSPKG--LSV 652
T ++ L LNYP+M + + F+RTVTNVG KS Y A V G LS+
Sbjct: 627 -TKEISKTLPRNLNYPTMSAKVSGTKPFNITFQRTVTNVGMQKSTYNAKVVKFPGSKLSI 685
Query: 653 TVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSDTKHSVKSPILVY 705
VSPRVL+ + +SF V V +SA L WSD H+V+SPI+VY
Sbjct: 686 KVSPRVLSMKSMNEKQSFMVTVSSDSIGTKQPVSANLIWSDGTHNVRSPIIVY 738
|
|
| TAIR|locus:2102807 AT3G46850 "AT3G46850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1388 (493.7 bits), Expect = 6.1e-142, P = 6.1e-142
Identities = 307/715 (42%), Positives = 414/715 (57%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLXXX 60
MG +P + H S+L G+ + ++ +R+Y +SFNGF ARL E + L
Sbjct: 38 MGALPSRVDYMPMSHHTSILQDVTGESSI-QDRLVRNYKRSFNGFAARLTESEREILASM 96
Query: 61 XXXXXXFENTRRKLHTTRTWDFLGMSE-KLQKRSSKAQSNIIVGLLDTGIWVESPSFNDK 119
F + L TT +W+F+G+ E K KR+ +S+ I+G++D+GI+ ES SF+ K
Sbjct: 97 DEVVSVFPSKNLNLQTTTSWNFMGLKEGKRTKRNPLIESDTIIGVIDSGIYPESDSFSGK 156
Query: 120 GFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST 179
GFGPPP KWKG C G NFT CN K+IGARYY P +S D GHG+HT+S
Sbjct: 157 GFGPPPKKWKGVCKGGTNFT-CNNKLIGARYYTPKLEGFP----ESARDNTGHGSHTASI 211
Query: 180 AAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSG--GCADMDILAAFDDAIGDGVDL 237
AAG VK S YG+ GT RGGVP+ARIA+YKVC G C ILAAFDDAI D VD+
Sbjct: 212 AAGNAVKHVSFYGLGNGTVRGGVPAARIAVYKVCDPGVIRCTSDGILAAFDDAIADKVDI 271
Query: 238 ISISIGGPSRSYFD-DSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASS 296
I++S+G + F+ D+++IG+FHAM KGILT AGN+GP + T+ ++APW+ TVAAS+
Sbjct: 272 ITVSLGADAVGTFEEDTLAIGAFHAMAKGILTVNGAGNNGPERRTIVSMAPWLFTVAASN 331
Query: 297 IDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLS 356
++R F+T V LGNG G S+N+F YPL G ++A+ + + G C G L
Sbjct: 332 MNRAFITKVVLGNGKTIVGRSVNSFDLNGKKYPLVYG-KSASSRCDA-SSAGFCSPGCLD 389
Query: 357 MKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVA-VDAPTDIAIATLIAGTFVVPEVGIKID 415
K+VKGKIV C Q G + + V P + A + V+ E I
Sbjct: 390 SKRVKGKIVLC----DTQRNPGEAQAMGAVASIVRNPYEDAASVFSFPVSVLSEDDYNIV 445
Query: 416 -QYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYS 474
Y+NSTKNP+A + K+ + AP +AS+SSRGP + +ILKPDI APG +ILAAYS
Sbjct: 446 LSYVNSTKNPKAAVLKSETIFNQKAPVVASYSSRGPNPLIHDILKPDITAPGSEILAAYS 505
Query: 475 ELASVTGLPGDRRIVPFNILSGTSMACPHXXXXXXYVKSFHPDWSPAAIKSALMTTATPM 534
V D R V + ++SGTSM+CPH Y+K+FHP WSP+ I+SA+MTTA PM
Sbjct: 506 PY--VPPSESDTRHVKYTVISGTSMSCPHVAGVAAYIKTFHPLWSPSMIQSAIMTTAWPM 563
Query: 535 KTKSDD----AELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRK 590
+ AE A G+G ++P A+HPGL+Y+ N S + FLC Y + RLI
Sbjct: 564 NASTSPSNELAEFAYGAGHVDPIAAIHPGLVYEANKSDHITFLCGFNYTGKKL-RLISGD 622
Query: 591 KKLNCSTIRPAQGLDGLNYPSMHFHFTNESSISAIFRRTVTNVGFAKSLYKATVHSPKGL 650
+C+ + LNYPSM + FRRTVTNVG + YKA V K L
Sbjct: 623 SS-SCTKEQTKSLTRNLNYPSMSAQVSGTKPFKVTFRRTVTNVGRPNATYKAKVVGSK-L 680
Query: 651 SVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSDTKHSVKSPILVY 705
V V P VL+ + +SFTV V G+ +++SA L WSD H V+SPI+VY
Sbjct: 681 KVKVVPAVLSLKSLYEKKSFTVTVSGAGPKAENLVSAQLIWSDGVHFVRSPIVVY 735
|
|
| TAIR|locus:2154503 AT5G58820 "AT5G58820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 786 (281.7 bits), Expect = 2.4e-138, Sum P(2) = 2.4e-138
Identities = 166/336 (49%), Positives = 208/336 (61%)
Query: 1 MGNVPEEAGISAVKEHHSLLTTAIGDEKLARESK-IRSYGKSFNGFVARLLPHEAKRLXX 59
MG++P + + H S+L GD + E + +RSY +SFNGF ARL E R+
Sbjct: 34 MGSLPSLLEYTPLSHHMSILQEVTGDSSV--EGRLVRSYKRSFNGFAARLTESERIRVAE 91
Query: 60 XXXXXXXFENTRRKLHTTRTWDFLGMSE-KLQKRSSKAQSNIIVGLLDTGIWVESPSFND 118
F N KL TT +WDFLG+ E K KR+ +S+ I+G +D+GIW ES SF+D
Sbjct: 92 MEGVVSVFPNINYKLQTTASWDFLGLKEGKNTKRNLAIESDTIIGFIDSGIWPESESFSD 151
Query: 119 KGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSS 178
KGFGPPP KWKG C G NFT CN K+IGAR Y + D GHGTHT+S
Sbjct: 152 KGFGPPPKKWKGVCSGGKNFT-CNNKLIGARDYTSEGTRD----------LQGHGTHTAS 200
Query: 179 TAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLI 238
TAAG V AS +GI GTARGGVP++RIA YKVC C +L+AFDDAI DGVDLI
Sbjct: 201 TAAGNAVADASFFGIGNGTARGGVPASRIAAYKVCSEKDCTAASLLSAFDDAIADGVDLI 260
Query: 239 SISIGGP-SRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSI 297
SIS+ + Y+ D+I+IG+FHA KGILT SAGN G + T +VAPWI++VAAS+
Sbjct: 261 SISLASEFPQKYYKDAIAIGAFHANVKGILTVNSAGNSGSFPSTTASVAPWILSVAASNT 320
Query: 298 DRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNG 333
+R F T V LGNG G S+N+F + YPL G
Sbjct: 321 NRGFFTKVVLGNGKTLVGRSVNSFDLKGKKYPLVYG 356
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 712 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-108 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 6e-32 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 6e-25 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 3e-24 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 4e-17 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 3e-16 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 3e-16 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 5e-16 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 6e-16 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-15 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 2e-15 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 8e-15 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 1e-14 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 2e-14 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 5e-14 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 2e-13 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 8e-13 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 4e-12 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 5e-12 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 7e-12 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 8e-12 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 1e-11 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-11 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 6e-11 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 7e-11 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 9e-11 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-10 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 2e-10 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 3e-10 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 4e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 9e-10 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 1e-09 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 4e-09 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 4e-09 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 4e-08 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 1e-07 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-07 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 2e-06 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 2e-06 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 6e-06 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 6e-06 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 7e-06 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 2e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 2e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 2e-05 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 2e-05 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 5e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 6e-05 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 6e-05 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 1e-04 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 1e-04 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 3e-04 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 4e-04 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 0.001 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 0.003 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 329 bits (846), Expect = e-108
Identities = 125/235 (53%), Positives = 152/235 (64%), Gaps = 10/235 (4%)
Query: 73 KLHTTRTWDFLGMSEKLQKR---SSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWK 129
+LHTTR+ DFLG+ ++ A II+G+LDTGIW E PSF D G GP P W
Sbjct: 2 QLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWP 61
Query: 130 GKCVTGANFT--RCNKKVIGARYYN----LDNALDPNTDQKSPVDTDGHGTHTSSTAAGE 183
G CVTG +F CN K+IGARY++ + + + +SP D DGHGTHT+STAAG
Sbjct: 62 GDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGN 121
Query: 184 TVKGASLYGIAQGTARGGVPSARIAMYKVCW-SGGCADMDILAAFDDAIGDGVDLISISI 242
V AS+ G A GTA G P ARIA+YKVCW GGC DILAA D AI DGVD+IS SI
Sbjct: 122 VVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYSI 181
Query: 243 GGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSI 297
GG S ++D I+I HA++ GI A SAGN GP TV NVAPW+ TVAAS++
Sbjct: 182 GGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAASTL 236
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 6e-32
Identities = 49/75 (65%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 458 LKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPD 517
LKPDIAAPG+DILAA++ PGD R F +SGTSMA PH A AA +KS HPD
Sbjct: 236 LKPDIAAPGVDILAAWTPE---GADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPD 292
Query: 518 WSPAAIKSALMTTAT 532
WSPAAIKSALMTTA
Sbjct: 293 WSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 6e-25
Identities = 64/201 (31%), Positives = 92/201 (45%), Gaps = 24/201 (11%)
Query: 100 IIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDP 159
+ V ++DTGI P G G P K KG G +F + + R Y
Sbjct: 4 VKVAVIDTGIDYTHPDL--GGPGFPNDKVKG----GYDFVDDDYDPMDTRPY------PS 51
Query: 160 NTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-C 218
S D GHGTH + AG V G +G A P A + YKV GG
Sbjct: 52 PLGDASAGDATGHGTHVAGIIAGNGVN----VGTIKGVA----PKADLYAYKVLGPGGSG 103
Query: 219 ADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPY 278
I+AA + A+ DG+D+I++S+G DD +I +A+K G++ +AGN GP
Sbjct: 104 TTDVIIAAIEQAVDDGMDVINLSLGSSVNGP-DDPDAIAINNAVKAGVVVVAAAGNSGPA 162
Query: 279 QGTVEN--VAPWIMTVAASSI 297
T+ + AP +TV AS++
Sbjct: 163 PYTIGSPATAPSAITVGASTV 183
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 51/125 (40%), Positives = 69/125 (55%), Gaps = 14/125 (11%)
Query: 433 VVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFN 492
V + + A + SSRGP + +KPDI APG+DI++ S TG +
Sbjct: 183 VADVAEADTVGPSSSRGPPTSD-SAIKPDIVAPGVDIMSTAP--GSGTG---------YA 230
Query: 493 ILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELAS--GSGQI 550
+SGTSMA PH A AAA +K HPDWSPA IK+ALM TA P+ S G+G++
Sbjct: 231 RMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRV 290
Query: 551 NPTKA 555
+ +A
Sbjct: 291 DALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 4e-17
Identities = 53/208 (25%), Positives = 80/208 (38%), Gaps = 49/208 (23%)
Query: 100 IIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDP 159
+ V ++DTG+ + P + + ++ D
Sbjct: 1 VTVAVIDTGVDPDHPDLDG---------------------------LFGGGDGGNDDDDN 33
Query: 160 NTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWS-GGC 218
P D +GHGTH + A G G P A++ KV G
Sbjct: 34 ENGPTDPDDGNGHGTHVAGIIAASAN---------NGGGVGVAPGAKLIPVKVLDGDGSG 84
Query: 219 ADMDILAAFDDAIGD-GVDLISISIGGPSR---SYFDDSISIGSFHAMKK-GILTACSAG 273
+ DI AA D A D G D+I++S+GGP S ++I +A+ K G+L +AG
Sbjct: 85 SSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAID----YALAKLGVLVVAAAG 140
Query: 274 NDGPYQGTVEN---VAPWIMTVAASSID 298
NDGP GT +P ++ V A D
Sbjct: 141 NDGPDGGTNIGYPAASPNVIAVGAVDRD 168
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 3e-16
Identities = 56/202 (27%), Positives = 77/202 (38%), Gaps = 47/202 (23%)
Query: 377 IDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKT----- 431
I R + AG +V V A D +GT + T A
Sbjct: 169 IKRAREAGVVVVVAAGNDGNSG---SGTSKPL----ATNNPDTGTVGSPATADDVLTVAS 221
Query: 432 --RVVNTSTAPFIASFSSRGPQKITLNI-LKPDIAAPGLDILAAY--SELASVTGLPGDR 486
+ V ++ FSS GP T ++ LKPDI APG +I + +
Sbjct: 222 ANKKVPNPNGGQMSGFSSWGP---TPDLDLKPDITAPGGNIYSTVNDNTYGY-------- 270
Query: 487 RIVPFNILSGTSMACPHAAAAAA----YVKSFHPDWSPA----AIKSALMTTATPMKTKS 538
+SGTSMA PH A A+A +K +P S +K+ LM TATP
Sbjct: 271 -------MSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSE 323
Query: 539 DDAELAS----GSGQINPTKAV 556
D S G+G I+ KA+
Sbjct: 324 DTKTYYSPRRQGAGLIDVAKAI 345
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 3e-16
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 442 IASFSSRGPQKITL-NILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMA 500
I+ FSSRGP T +KPD+ APG +I++ S + G +SGTSMA
Sbjct: 180 ISYFSSRGP---TGDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYF----EMSGTSMA 232
Query: 501 CPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532
PH + A A + +P +P +K L TAT
Sbjct: 233 TPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 5e-16
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 15/124 (12%)
Query: 433 VVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFN 492
V + IA FS+ G ++ +KPDI APG +IL++ L G ++
Sbjct: 168 VGAVTENGTIADFSNYGG---PVDGIKPDIVAPGGNILSSGPG----GDLGG------YD 214
Query: 493 ILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINP 552
SGTSMA P A AAA + S +P +P +++ L+TTAT + + D G G +N
Sbjct: 215 SHSGTSMAAPLVAGAAALLLSANPSLTPETLRALLVTTATDLGSMGLDRSF--GYGLLNL 272
Query: 553 TKAV 556
KAV
Sbjct: 273 GKAV 276
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 45/206 (21%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
I V +LDTGI P F+ + R+ + N +
Sbjct: 2 KGITVAVLDTGIDAPHPDFDGRI---------------------------IRFADFVNTV 34
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVC-WSG 216
+ T +P D +GHGTH + AG G + G +G A P A + KV SG
Sbjct: 35 NGRT---TPYDDNGHGTHVAGIIAG---SGRASNGKYKGVA----PGANLVGVKVLDDSG 84
Query: 217 GCADMDILAAFDDAI----GDGVDLISISIGGPSR-SYFDDSISIGSFHAMKKGILTACS 271
++ DI+A D + + ++++S+G P SY +D + GI+ +
Sbjct: 85 SGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVA 144
Query: 272 AGNDGPYQGTVEN--VAPWIMTVAAS 295
AGN GP GT+ + +P ++TV A
Sbjct: 145 AGNSGPGPGTITSPGNSPKVITVGAV 170
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 25/132 (18%)
Query: 436 TSTAPFIASFSSRGPQKITLN--ILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNI 493
+ A + FSS GP N LKPD+AAPG +IL+ Y G + +
Sbjct: 182 IAVASVDSYFSSWGP----TNELYLKPDVAAPGGNILSTY-----PLAGGG------YAV 226
Query: 494 LSGTSMACPHAAAAAA-YVKSFHPDWSPAAIKSALMTTATPMK---TKSDDAELAS---- 545
LSGTSMA P+ A AAA +++ H SPA ++ L +TA P+ S +LA
Sbjct: 227 LSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQ 286
Query: 546 GSGQINPTKAVH 557
G+G +N KA++
Sbjct: 287 GAGLVNAYKALY 298
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-15
Identities = 43/132 (32%), Positives = 55/132 (41%), Gaps = 15/132 (11%)
Query: 305 VKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKI 364
V LGNG G S+ + YPL + + + C G+L KVKGKI
Sbjct: 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANSGDV-----DASLCLPGSLDPSKVKGKI 54
Query: 365 VYCLGSGSQDY-----TIDRLQGAGTIVAVDAPTD---IAIATLIAGTFVVPEVGIKIDQ 416
V C G+ + GAG I+A D +A A ++ V E G I
Sbjct: 55 VLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILS 114
Query: 417 YINSTKNPQAVI 428
YINST NP A I
Sbjct: 115 YINSTSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 8e-15
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 20/100 (20%)
Query: 433 VVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFN 492
V T + +ASFS+ G + + D+AAPG+DIL + PG +
Sbjct: 180 VAATDSNDALASFSNYGKKTV-------DLAAPGVDIL---------STSPGGG----YG 219
Query: 493 ILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532
+SGTSMA PH A AAA + S +P+ + A IK A++++A
Sbjct: 220 YMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
ASFSS GP+ ++AAPG+DIL+ Y P + + LSGTSMA
Sbjct: 162 RASFSSTGPE--------VELAAPGVDILSTY---------PNND----YAYLSGTSMAT 200
Query: 502 PHAAAAAAYVKSFHPDWSPAAIKSALMTT 530
PH A AA V S P+ + A ++ AL T
Sbjct: 201 PHVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 2e-14
Identities = 41/105 (39%), Positives = 50/105 (47%), Gaps = 18/105 (17%)
Query: 436 TSTAPFIASFSSRGPQKITL---------NILKPDIAAPGLDILAAYSELASVTGLPGDR 486
A FSS G +L KPD+AAPG+D+ +A G GD
Sbjct: 158 VDRDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQ------GANGDG 211
Query: 487 RIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTA 531
+ + LSGTSMA PH A AA + + HPD SP IK AL TA
Sbjct: 212 Q---YTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETA 253
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 5e-14
Identities = 62/208 (29%), Positives = 90/208 (43%), Gaps = 40/208 (19%)
Query: 100 IIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDP 159
+ V ++DTGI P+ FGP K G +F +G Y+ N P
Sbjct: 15 VKVAVVDTGIDYTHPALGG-CFGPGC-----KVAGGYDF-------VGD-DYDGTNPPVP 60
Query: 160 NTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKV--CWSGG 217
+ D P+D GHGTH + A + YG G A P A + Y+V C
Sbjct: 61 DDD---PMDCQGHGTHVAGIIAANP----NAYGF-TGVA----PEATLGAYRVFGCSGST 108
Query: 218 CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGP 277
D I+AAF A DG D+I+ S+GGPS + +D ++ + + G++ +AGNDG
Sbjct: 109 TEDT-IIAAFLRAYEDGADVITASLGGPS-GWSEDPWAVVASRIVDAGVVVTIAAGNDGE 166
Query: 278 YQGTVENVAPWIMTVAASSIDRKFVTAV 305
P+ + AS V AV
Sbjct: 167 R-------GPFYASSPASGRG---VIAV 184
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 49/237 (20%), Positives = 74/237 (31%), Gaps = 59/237 (24%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
+ + VG++D+GI + P F +
Sbjct: 3 AGVKVGVIDSGIDLSHPEFAGR-----------------------------VSEASYYVA 33
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGV-PSARIAMYKVCWSG 216
+ S D D HGTH + A G GV P A + + S
Sbjct: 34 VNDAGYASNGDGDSHGTHVAGVIAAA----------RDGGGMHGVAPDATLYSARASASA 83
Query: 217 GC--ADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGS------------FHAM 262
G +D DI AA+D GV +I+ S GG + GS A
Sbjct: 84 GSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAA 143
Query: 263 KKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKF--VTAVKLGNGMRTSGIS 317
G L +AGNDG ++ A + ++ + V AV + + S
Sbjct: 144 NAGGLFVFAAGNDGQANPSLAAAA---LPYLEPELEGGWIAVVAVDPNGTIASYSYS 197
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 8e-13
Identities = 34/73 (46%), Positives = 41/73 (56%), Gaps = 11/73 (15%)
Query: 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSP 520
DI APG+DIL+A+ S T LSGTSMA PH A AAY+ S PD SP
Sbjct: 194 DIFAPGVDILSAWIG--SDTA---------TATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242
Query: 521 AAIKSALMTTATP 533
A +K+ L+ AT
Sbjct: 243 AEVKARLLNLATK 255
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 4e-12
Identities = 34/98 (34%), Positives = 42/98 (42%), Gaps = 21/98 (21%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
IA FS RGP +KPDIAAPG++IL A PG + SGTS+A
Sbjct: 359 IAIFSGRGP--TRDGRIKPDIAAPGVNILTAS---------PGGG----YTTRSGTSVAA 403
Query: 502 PHAAAAAA------YVKSFHPDWSPAAIKSALMTTATP 533
A A A V+ P IK+ L+ A
Sbjct: 404 AIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARR 441
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 5e-12
Identities = 52/209 (24%), Positives = 77/209 (36%), Gaps = 42/209 (20%)
Query: 101 IVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPN 160
VG+LDTGI V P + G + +DN DP
Sbjct: 1 TVGVLDTGIDVNHPDLSG-------------------RYIGLAYRNGYDF--VDNDPDPT 39
Query: 161 TDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCAD 220
D D +GHGTH + A G+ G+A P+A++ KV G D
Sbjct: 40 PDD----DNNGHGTHVAGIIAAGDNNGSGGVGVA--------PNAKLESVKVLPGSGGTD 87
Query: 221 MDILAAFDDAI--GDGVDLISISIGGPSRSYFDDSISIGSF---HAMKKGILTACSAGND 275
++ A + A + + +I++S+G S +I A KG L +AGN
Sbjct: 88 SELAGAIEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAGNG 147
Query: 276 GPYQGTVENVAP---W-IMTVAASSIDRK 300
G Y P I+TV A + +
Sbjct: 148 GDYADNNPVSDPASANNIITVGAVTENGT 176
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 7e-12
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 19/88 (21%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
+ S+ G DIAAPG DIL++ + + LSGTSMA P
Sbjct: 173 SPSSNGGA--------GVDIAAPGGDILSSPTTGGG-----------GYATLSGTSMAAP 213
Query: 503 HAAAAAAYVKSFHPDWSPAAIKSALMTT 530
A AA + S +PD +PA +K+AL++T
Sbjct: 214 IVAGVAALLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 8e-12
Identities = 55/211 (26%), Positives = 78/211 (36%), Gaps = 53/211 (25%)
Query: 99 NIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALD 158
+ V ++DTGI P V GANFT
Sbjct: 1 GVKVAVIDTGIDSSHPDLKLNI------------VGGANFTG------------------ 30
Query: 159 PNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGV---PSARIAMYKVCWS 215
D D +GHGTH + A A G V P A + KV
Sbjct: 31 --DDNNDYQDGNGHGTHVAGIIA------------ALDNGVGVVGVAPEADLYAVKVLND 76
Query: 216 GGCADM-DILAAFDDAIGDGVDLISISIGGPSRS-YFDDSISIGSFHAMKKGILTACSAG 273
G DI+A + AI +G+D+I++S+GGPS S ++I A GIL +AG
Sbjct: 77 DGSGTYSDIIAGIEWAIENGMDIINMSLGGPSDSPALREAIKK----AYAAGILVVAAAG 132
Query: 274 NDGPYQGTVENVAPWIMTVAASSIDRKFVTA 304
N G + + A + +A ++D A
Sbjct: 133 NSGNGDSSYDYPAKYPSVIAVGAVDSNNNRA 163
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 46/135 (34%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 426 AVIYKTRVVNTSTAPFIASFSSRGPQKITLN----ILKPDIAAPGLDILAAYSELASVTG 481
AV Y S + SS P I L KPD+ AP D + +V G
Sbjct: 153 AVDYGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAP--DGVNG-----TVDG 205
Query: 482 LPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDA 541
GTS A PHAA AA V S +P +PA I+ AL +TA M D
Sbjct: 206 DGD-----GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPGYDN 260
Query: 542 ELASGSGQINPTKAV 556
ASGSG ++ +AV
Sbjct: 261 --ASGSGLVDADRAV 273
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 21/124 (16%)
Query: 419 NSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLN-ILKPDIAAPGLDILAAYSELA 477
S + + + + +ASFSSRGP T + +KPD+ APG IL+A S
Sbjct: 179 ASNNPSVSNGEGGLGQSDN-SDTVASFSSRGP---TYDGRIKPDLVAPGTGILSARSGGG 234
Query: 478 SVTGLPGDRRIVPFNILSGTSMACPHAAAAAA----------YVKSFHPDWSPAAIKSAL 527
+ + SGTSMA P A AAA Y F+P S A +K+ L
Sbjct: 235 GIGDTSDS----AYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALL 288
Query: 528 MTTA 531
+ +A
Sbjct: 289 INSA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 6e-11
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 15 EHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSEEESVVSVFENTRRKL 74
H S ++ E+ A S + SY FNGF A+L EA++L + V V + +L
Sbjct: 18 SHKSWHASSK--EEAAGASILYSYKHGFNGFAAKLTEEEAEKLRKHPDVEYVEPDQVVEL 75
Query: 75 H 75
H
Sbjct: 76 H 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 7e-11
Identities = 44/211 (20%), Positives = 71/211 (33%), Gaps = 77/211 (36%)
Query: 104 LLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQ 163
+LDTGI F + A W GA+F
Sbjct: 31 VLDTGIRTTHVEFGGR------AIW------GADFV----------------------GG 56
Query: 164 KSPVDTDGHGTHTSSTAAGETV---KGASLYGIAQGTARGGVPSARIAMYKVCWSGGCAD 220
D +GHGTH + T G+T K A+L + KV G
Sbjct: 57 DPDSDCNGHGTHVAGTVGGKTYGVAKKANLVAV-----------------KVLDCNGSGT 99
Query: 221 M-DILAAFDDAIGDGVDL-----ISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGN 274
+ I+A + D ++S+GG + + D +++ A+ G++ +AGN
Sbjct: 100 LSGIIAGLEWVANDATKRGKPAVANMSLGGGASTALDAAVA----AAVNAGVVVVVAAGN 155
Query: 275 DGPYQGTVENV-------APWIMTVAASSID 298
++ AP +TV A+ D
Sbjct: 156 SN------QDACNYSPASAPEAITVGATDSD 180
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 9e-11
Identities = 47/187 (25%), Positives = 68/187 (36%), Gaps = 40/187 (21%)
Query: 99 NIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALD 158
+ V ++D+GI + P K + + G D
Sbjct: 1 KVTVAVIDSGIDPDHPDL------------KNSISSYSKNLVPKG---GYDGKEAGETGD 45
Query: 159 PNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVC-WSGG 217
N VD GHGT + A A G +G P I Y+V G
Sbjct: 46 IN----DIVDKLGHGTAVAGQIA------------ANGNIKGVAPGIGIVSYRVFGSCGS 89
Query: 218 CADMDILAAFDDAIGDGVDLISISIGG---PSRSYFDDSISIGSF-----HAMKKGILTA 269
I+ A DA DGVD+I++S+GG Y DD + ++ +A KG +
Sbjct: 90 AESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVV 149
Query: 270 CSAGNDG 276
+AGNDG
Sbjct: 150 AAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 14/139 (10%)
Query: 142 NKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGG 201
N+KV A Y D N D D HG H + AG + + GI +G A
Sbjct: 59 NEKVPFAYNYA-----DNNDDILDEDDGSSHGMHVAGIVAGNGDEEDNGEGI-KGVA--- 109
Query: 202 VPSARIAMYKV---CWSGGCADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGS 258
P A++ KV G D A +DA+ G D+I++S+G + D +
Sbjct: 110 -PEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQA 168
Query: 259 F-HAMKKGILTACSAGNDG 276
A + G++ +AGNDG
Sbjct: 169 IKRAREAGVVVVVAAGNDG 187
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 38/102 (37%), Positives = 50/102 (49%), Gaps = 17/102 (16%)
Query: 433 VVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFN 492
V T +A FSSRGP T +KPDI+APG++I +A +PG +
Sbjct: 178 VGATDRNDVLADFSSRGP--STYGRIKPDISAPGVNIRSA---------VPGGG----YG 222
Query: 493 ILSGTSMACPHAAAAAAYVKSFHPDWSPA--AIKSALMTTAT 532
SGTSMA PH A AA + S +P A ++ L TA
Sbjct: 223 SSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-10
Identities = 52/216 (24%), Positives = 73/216 (33%), Gaps = 48/216 (22%)
Query: 100 IIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDP 159
I+V +DTG+ P+ +K G + N DP
Sbjct: 4 IVVANIDTGVDWTHPALKNKYRGWGGGSAD----------------------HDYNWFDP 41
Query: 160 NTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCA 219
+ P D +GHGTHT T G G G P AR + G
Sbjct: 42 VGNTPLPYDDNGHGTHTMGTMVGNDG---------DGQQIGVAPGARWIACRALDRNGGN 92
Query: 220 DMDILAAFD------DAIGD------GVDLISISIGGPSRSYFDDSISIGSFHAMKKGIL 267
D D L D+ G+ D+I+ S GGPS ++ ++ A GI
Sbjct: 93 DADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVAAWRA--AGIF 150
Query: 268 TACSAGNDGPYQGTVENVA---PWIMTVAASSIDRK 300
+AGNDGP T+ P V A+ +
Sbjct: 151 PVFAAGNDGPRCSTLNAPPANYPESFAVGATDRNDV 186
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-10
Identities = 49/203 (24%), Positives = 69/203 (33%), Gaps = 51/203 (25%)
Query: 102 VGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNT 161
V +LDTG+ + P + A+W A+F +
Sbjct: 4 VAVLDTGVDADHPDLAGR-----VAQW-------ADFD-----------------ENRRI 34
Query: 162 DQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADM 221
D GHGTH S T G KG G A P A + KV GG +
Sbjct: 35 SATEVFDAGGHGTHVSGTIGGGGAKGVY-----IGVA----PEADLLHGKVLDDGGGSLS 85
Query: 222 DILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAM------KKGILTACSAGND 275
I+A + A+ D++S+S+GG S + G L SAGN+
Sbjct: 86 QIIAGMEWAVEKDADVVSMSLGG-------TYYSEDPLEEAVEALSNQTGALFVVSAGNE 138
Query: 276 GPYQGTVENVAPWIMTVAASSID 298
G A ++V A D
Sbjct: 139 GHGTSGSPGSAYAALSVGAVDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 9e-10
Identities = 59/231 (25%), Positives = 89/231 (38%), Gaps = 58/231 (25%)
Query: 72 RKLHTTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGK 131
++ + WD G S + V ++DTG+ P K K
Sbjct: 14 DQIGAPKAWDITG------------GSGVTVAVVDTGVDPTHPDLL-----------KVK 50
Query: 132 CVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLY 191
V G +F +DN D D +GHGTH + A T G
Sbjct: 51 FVLGYDF--------------VDNDSDAM-------DDNGHGTHVAGIIAAATNNG---T 86
Query: 192 GIAQGTARGGVPSARIAMYKVC-WSGGCADMDILAAFDDAIGDGVDLISISIGGPSRSY- 249
G+A G A P A+I KV +G + DI A G +I++S+GG S
Sbjct: 87 GVA-GVA----PKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGLGSTA 141
Query: 250 FDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRK 300
++I+ +A KG++ +AGN+G + P + VAA+ D K
Sbjct: 142 LQEAIN----YAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDDK 188
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 27/149 (18%)
Query: 161 TDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCAD 220
+ P+D +GHGTH + G GIA G + +I K + G
Sbjct: 54 NNDNDPMDDNGHGTHVAGIIGAVGNNG---IGIA-----GVAWNVKIMPLKFLGADGSGT 105
Query: 221 M-DILAAFDDAIGDGVDLISISIGGPSRS-YFDDSISIGSFHAMKKGILTACSAGNDG-- 276
D + A D A+ G +I+ S GG S D+I+ A+ GIL +AGNDG
Sbjct: 106 TSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRDAIA----RAIDAGILFVAAAGNDGTN 161
Query: 277 -------PYQGTVENVAPWIMTVAASSID 298
P ++N I++VAA+ +
Sbjct: 162 NDKTPTYPASYDLDN----IISVAATDSN 186
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 30/89 (33%), Positives = 40/89 (44%), Gaps = 22/89 (24%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
ASFS+ G D++APG IL+ P + +SGTSMA P
Sbjct: 190 ASFSNYGKWV--------DVSAPGGGILSTT---------PDGD----YAYMSGTSMATP 228
Query: 503 HAAAAAAYVKSFHPDWSPAAIKSALMTTA 531
H A AA + S P S + ++ AL TA
Sbjct: 229 HVAGVAALLYSQGP-LSASEVRDALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 24/115 (20%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
+SFS GP D+AAPG +I++ PG + SGTS A P
Sbjct: 191 SSFSLPGPW--------VDLAAPGENIVSLS---------PGGDGLA---TTSGTSFAAP 230
Query: 503 HAAAAAAYVKSFHPDWSPAAIKSALMTTA-TPMKTKSDDAELASGSGQINPTKAV 556
+ AA V+S PD + A ++ + TA P + DD G G ++P A+
Sbjct: 231 FVSGTAALVRSRFPDLTAAQVRRRIEATADHPARGGRDD---YVGYGVVDPVAAL 282
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.1 bits (134), Expect = 4e-08
Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 16/177 (9%)
Query: 372 SQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKT 431
S ++ A+ A + ++A D ++ VI
Sbjct: 251 SLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVI--- 307
Query: 432 RVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPF 491
V + +ASFS+ G DIAAPG++IL L++V LPGD +
Sbjct: 308 AVGALDLSDTVASFSNDGSPT------GVDIAAPGVNIL----SLSAVNTLPGDG--ADY 355
Query: 492 NILSGTSMACPHAAAAAAYVKSFHP-DWSPAAIKSALMTTATPMKTKSDDAELASGS 547
LSGTSMA PH + AA V S +P + +PA +++ ++TTA D + G
Sbjct: 356 VTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSGVDNLVGGGL 412
|
Length = 508 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 57/237 (24%), Positives = 86/237 (36%), Gaps = 50/237 (21%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
IVG+ DTG+ F D F F R K++ RY +L
Sbjct: 7 KGQIVGVADTGLDTNHCFFYDPNFNKTN-----------LFHR---KIV--RYDSLS--- 47
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMY----KVC 213
+ D DGHGTH + AG+ +S+ +G P A++
Sbjct: 48 ------DTKDDVDGHGTHVAGIIAGKGNDSSSISL-----YKGVAPKAKLYFQDIGDTSG 96
Query: 214 WSGGCADMDILAAFDDAIGDGVDLISISIGGPSRSYFDD-SISIGSFHAMKKGILTACSA 272
D++ L F G + S S G P + + + + F IL SA
Sbjct: 97 NLSSPPDLNKL--FSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNPDILFVFSA 154
Query: 273 GNDGPY-------QGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFS 322
GNDG T +NV +TV AS+ V+ + G G + ++ +FS
Sbjct: 155 GNDGNDGSNTIGSPATAKNV----LTVGASNNPS--VSNGEGGLGQSDNSDTVASFS 205
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 41/165 (24%), Positives = 59/165 (35%), Gaps = 30/165 (18%)
Query: 396 AIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITL 455
A A L GT +V G N ++ P + +A +A+ + G
Sbjct: 151 AQAALARGTLIVAAAG-------NESQRPAGIPPVGNPAACPSAMGVAAVGALGRTGNFS 203
Query: 456 NIL-----KPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAY 510
+ + DIAAPG+DI++A PG + +SGTSMA PH A AA
Sbjct: 204 AVANFSNGEVDIAAPGVDIVSA---------APGGG----YRSMSGTSMATPHVAGVAAL 250
Query: 511 VKSFHPDWSPAAIKSALM-----TTATPMKTKSDDAELASGSGQI 550
P A+ + L T D + G G
Sbjct: 251 WAEALPKAGGRALAALLQARLTAARTTQFAPGLDLPDRGVGLGLA 295
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 16/94 (17%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILA-----AYSELASVTGLPGDRRIVPFNILSG 496
AS+S+ GP D++APG D + Y + + T PG L G
Sbjct: 203 RASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGF---LQG 251
Query: 497 TSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTT 530
TSMA PH A AA +KS +P +PA I+S L +T
Sbjct: 252 TSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
ASFSS GP LKPD+ A G I + +GTS +C
Sbjct: 186 KASFSSIGPT--ADGRLKPDVMALGTGIYVINGDGNITYA-------------NGTSFSC 230
Query: 502 PHAAAAAAYVKSFHPDWSPAAIKSALMTTA 531
P A A + HP+W+ IK A++ +A
Sbjct: 231 PLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 46/201 (22%), Positives = 74/201 (36%), Gaps = 44/201 (21%)
Query: 100 IIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDP 159
++V ++DTG+ + P + L +
Sbjct: 1 VVVAIIDTGVDLNHPDL-------------------------------SGKPKLVPGWNF 29
Query: 160 NTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCA 219
++ D DGHGT + AA G + G+A P A++ ++ S G A
Sbjct: 30 VSNNDPTSDIDGHGTACAGVAAAVGNNGLGVAGVA--------PGAKLMPVRIADSLGYA 81
Query: 220 -DMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGS-FHAMK--KGILTACSAGND 275
DI A A +G D+IS S GG S S +I + + KG + +AGN
Sbjct: 82 YWSDIAQAITWAADNGADVISNSWGGSD-STESISSAIDNAATYGRNGKGGVVLFAAGNS 140
Query: 276 GPYQGTVENVAPWIMTVAASS 296
G + P ++ VAA+
Sbjct: 141 GRSVSSGYAANPSVIAVAATD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 6e-06
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 21/101 (20%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRR-----IVPFNILSG 496
+ S+SSRGP KPD+AA G A G D F++ G
Sbjct: 221 VVSWSSRGPSIA--GDPKPDLAAIG--------AFAWAPGRVLDSGGALDGNEAFDLFGG 270
Query: 497 TSMACPHAAAAAAYV-----KSFHPD-WSPAAIKSALMTTA 531
TSMA P A +AA V + + P +++ LM+TA
Sbjct: 271 TSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 59/226 (26%), Positives = 85/226 (37%), Gaps = 74/226 (32%)
Query: 100 IIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDP 159
+ V +LDTGI + P+F G+ +T +F
Sbjct: 10 VRVAVLDTGIDLTHPAF------------AGRDITTKSFV-------------------- 37
Query: 160 NTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMY-KVCWSGGC 218
+ D GHGTH + T G V G YG+A+G A IA+ KV GG
Sbjct: 38 --GGEDVQDGHGHGTHCAGTIFGRDVPGPR-YGVARG--------AEIALIGKVLGDGGG 86
Query: 219 ADMDILAAFDDAIGDGVDLISISIG---------------GPSRSY---------FDDSI 254
D ILA A+ +G D+IS+S+G SR+ FD +
Sbjct: 87 GDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALM 146
Query: 255 SIGSFHAM-KKGILTACSAGNDGPYQGTVENVA-----PWIMTVAA 294
++ + A +G L +AGN+ + V P M VAA
Sbjct: 147 TLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAA 192
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACP 502
AS+S+ G D+ APG+ I + S PG + SGTS A P
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGG----YGSFSGTSFASP 214
Query: 503 HAAAAAAYVKSFHPDWSPAAIKSALMTT 530
AA AA + S +P+ +PA ++ L +T
Sbjct: 215 VAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 34/90 (37%), Positives = 44/90 (48%), Gaps = 15/90 (16%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
ASFS+ G DIAAPG+ + L++V L GD + LSGTSMA
Sbjct: 198 KASFSNYGRWV--------DIAAPGVGTI-----LSTVPKLDGDGG-GNYEYLSGTSMAA 243
Query: 502 PHAAAAAAYVKSFHPDW-SPAAIKSALMTT 530
PH + AA V S PD +P I+ L +
Sbjct: 244 PHVSGVAALVLSKFPDVFTPEQIRKLLEES 273
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 45/209 (21%), Positives = 66/209 (31%), Gaps = 33/209 (15%)
Query: 99 NIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALD 158
IIV ++DTG+ P G G G + + +
Sbjct: 11 GIIVAVVDTGVDGTHPDLQGNGDG------DG-----------YDPAVNGYNFVPNVGDI 53
Query: 159 PNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGC 218
N GHGTH + T A G + GIA P +I ++
Sbjct: 54 DNDVS----VGGGHGTHVAGTIAAVNNNGGGVGGIAGAGGVA--PGVKIMSIQIFAGRYY 107
Query: 219 A-DMDILAAFDDAIGDGVDLISISIGGPSRSY--------FDDSISIGSFHAMKKGILTA 269
D + AA A +G ++ S GG FD I + GI+
Sbjct: 108 VGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVF 167
Query: 270 CSAGNDGPYQGTVENVAPWIMTVAASSID 298
SAGN + P ++ VAA +
Sbjct: 168 -SAGNSYTDEHRFPAAYPGVIAVAALDTN 195
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 30/135 (22%)
Query: 161 TDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKV-------- 212
T++K+ D GHGT + A + G A P A I +++V
Sbjct: 36 TNEKTLDDGLGHGTFVAGVIASSREQ---CLGFA--------PDAEIYIFRVFTNNQVSY 84
Query: 213 -CWSGGCADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACS 271
W L AF+ AI +D++++SIGGP + D + I+ +
Sbjct: 85 TSW--------FLDAFNYAILTKIDVLNLSIGGP--DFMDKPFVDKVWELTANNIIMVSA 134
Query: 272 AGNDGPYQGTVENVA 286
GNDGP GT+ N A
Sbjct: 135 IGNDGPLYGTLNNPA 149
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 41/200 (20%)
Query: 99 NIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKC-----------------VTGANF--T 139
+IV +LD+G+ ++ K W K V G NF
Sbjct: 2 TVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQ 54
Query: 140 RCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTAR 199
++++G Y+L N D P+ HGTH + A G + G+A
Sbjct: 55 YDPRRIVGDDPYDLTEKGYGNNDVNGPISDADHGTHVAGIIAAVRDNGIGIDGVAD---- 110
Query: 200 GGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIG---GPSRSYFDDSISI 256
+ +I ++ +G D DI A A+ +G +I++S G P++ + DD+I
Sbjct: 111 ----NVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKSFSPNKEWVDDAIK- 165
Query: 257 GSFHAMKKGILTACSAGNDG 276
+A KG+L +AGNDG
Sbjct: 166 ---YAESKGVLIVHAAGNDG 182
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 21/176 (11%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGI-AQGTARGGVPSARIA----------MYKVCWSG 216
D HGT +S AAG +LYG + RG P A+IA +Y W+
Sbjct: 54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTA 113
Query: 217 GCADMDILAAFDDAIGDGVDLISISIGGPSRSY------FDDSISIGSFHAMKKGILTAC 270
G +D ++ G VD+IS S G + +Y D S + G+
Sbjct: 114 GFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVS 173
Query: 271 SAGNDGPYQGTVEN--VAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPR 324
+AGN GP GT+ A ++V A++ + + G SG + ++S R
Sbjct: 174 AAGNGGPGYGTITAPGAASLAISVGAAT-NFDYRPFYLFGYLPGGSG-DVVSWSSR 227
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 6e-05
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
Query: 445 FSSRGPQKITLNILKPDIAAPG--------LDILAAYSELASVTGLPGDRRIVPFNILSG 496
+S GP +KPD+ A G + L + P V G
Sbjct: 201 TTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTV---GG 255
Query: 497 TSMACPHAAAAAAYVKSFHPDWSPAAIKSALM 528
TS A P AA AA + + P+ SP I+ AL+
Sbjct: 256 TSFAAPLAARLAAGLFAELPELSPETIR-ALL 286
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 462 IAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPA 521
+AAPG +I + + + G +SGTS A PH + AAA + P +
Sbjct: 208 LAAPGENIYSTDPDGGNGYGR-----------VSGTSFAAPHVSGAAALLAQKFPWLTAD 256
Query: 522 AIKSALMTTAT 532
++ L+TTAT
Sbjct: 257 QVRQTLLTTAT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 21/99 (21%)
Query: 442 IASFSSRGPQKITL----NILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGT 497
IA FSSRG L +KPDI G + + + G G R LSGT
Sbjct: 166 IARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGS-----KLKG--GCRA------LSGT 212
Query: 498 SMACPHAAAAAAYVKSFHPD----WSPAAIKSALMTTAT 532
S+A P A A A + S P+ +PA++K AL+ +AT
Sbjct: 213 SVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESAT 251
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 20/92 (21%)
Query: 441 FIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMA 500
+A+FS+ G K + D+ APG I + P + + SGTSMA
Sbjct: 220 LVANFSNYG--KKNV-----DVFAPGERIYST---------TPDNE----YETDSGTSMA 259
Query: 501 CPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532
P + AA + S++P+ + +K ++ +
Sbjct: 260 APVVSGVAALIWSYYPNLTAKEVKQIILESGV 291
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Query: 172 HGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAI 231
HGT +S AG + L A + G + + + A D
Sbjct: 38 HGTAVASLLAGAGAQRPGLLPGADLYGAD-------VFGRAGGGEGASALALARALDWLA 90
Query: 232 GDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGP 277
GV +++IS+ GP + +++ A +G++ +AGNDGP
Sbjct: 91 EQGVRVVNISLAGPPNALLAAAVAA----AAARGMVLVAAAGNDGP 132
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 13/71 (18%)
Query: 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSP 520
D AAPG+D+ A +SGTS A P AA A + P
Sbjct: 168 DFAAPGVDVWVA----------APGGGYR---YVSGTSFAAPFVTAALALLLQASPLAPD 214
Query: 521 AAIKSALMTTA 531
A T
Sbjct: 215 DARARLAATAK 225
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 31/127 (24%), Positives = 44/127 (34%), Gaps = 34/127 (26%)
Query: 99 NIIVGLLDTGIWVESPSFNDKGF--------------GPPPAKWKGKCVTGANFTRCNKK 144
++VG++DTGI P F ++ GPPP G +
Sbjct: 5 GVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP--------GGYYGGGEYTE 56
Query: 145 VIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPS 204
I DN D + D +GHGTH + AAG G +G P
Sbjct: 57 EIINAALASDNPYDIVPSR----DENGHGTHVAGIAAG--------NGDNNPDFKGVAPE 104
Query: 205 ARIAMYK 211
A + + K
Sbjct: 105 AELIVVK 111
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 712 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.98 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.84 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.72 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 98.99 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 98.96 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.67 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.44 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.39 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.32 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.24 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.09 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.09 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.08 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.0 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 97.97 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 97.95 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 97.93 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 97.85 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 97.82 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 97.76 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 97.73 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 97.73 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 97.53 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.48 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 97.47 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 96.15 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.09 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 95.17 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 93.93 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 93.76 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 93.02 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 92.49 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 91.83 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 91.29 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 89.95 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 85.86 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 85.66 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 85.26 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 85.14 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 84.88 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 80.77 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=437.69 Aligned_cols=294 Identities=60% Similarity=0.929 Sum_probs=250.4
Q ss_pred eecccCCCccccccchhhhc-----cCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCcccc--CCce
Q 045363 72 RKLHTTRTWDFLGMSEKLQK-----RSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTR--CNKK 144 (712)
Q Consensus 72 ~~~~~~~s~~~~~~~~~~~~-----~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~--~n~k 144 (712)
+++++++++.++++. .+| ..+++|+||+|||||||||++||+|.+....+.+..|.+.|..+..+.. |++|
T Consensus 1 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 78 (307)
T cd04852 1 YQLHTTRSPDFLGLP--GAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNK 78 (307)
T ss_pred CCccccCCHHHcCCC--CCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCe
Confidence 467889999999996 444 4599999999999999999999999999888899999999999887764 8999
Q ss_pred eEEeEeccCCCCCCC-----CCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecC-CCC
Q 045363 145 VIGARYYNLDNALDP-----NTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWS-GGC 218 (712)
Q Consensus 145 i~g~~~~~~~~~~~~-----~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~-~g~ 218 (712)
+++.++| .+++... ......+.|..||||||||||||+...+....|...+.+.||||+|+|+++|+++. ..+
T Consensus 79 i~g~~~~-~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~ 157 (307)
T cd04852 79 LIGARYF-SDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGC 157 (307)
T ss_pred EEEEEEc-ccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCc
Confidence 9999999 6654321 23345678899999999999999987766666666677799999999999999998 448
Q ss_pred ChHHHHHHHHHHHhCCCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccC
Q 045363 219 ADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSID 298 (712)
Q Consensus 219 ~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~ 298 (712)
..+++++||++|++++++|||||||......+.+.+..+++.+.++|++||+||||+|+.....++..||+++||+++
T Consensus 158 ~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~-- 235 (307)
T cd04852 158 FGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST-- 235 (307)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc--
Confidence 889999999999999999999999987545567778888888999999999999999988888888899999998631
Q ss_pred ceeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhh
Q 045363 299 RKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTID 378 (712)
Q Consensus 299 ~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~ 378 (712)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcc
Q 045363 379 RLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNIL 458 (712)
Q Consensus 379 ~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~l 458 (712)
+
T Consensus 236 -------------------------------------------------------------------------------~ 236 (307)
T cd04852 236 -------------------------------------------------------------------------------L 236 (307)
T ss_pred -------------------------------------------------------------------------------C
Confidence 4
Q ss_pred cCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 459 KPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 459 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
||||+|||.+|++++..... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 237 ~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 237 KPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 77999999999998864211 111223356999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=445.03 Aligned_cols=300 Identities=19% Similarity=0.204 Sum_probs=217.4
Q ss_pred CCccccccchhhhcc--CCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccc---cccCCccccCCceeEEeEecc
Q 045363 78 RTWDFLGMSEKLQKR--SSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGK---CVTGANFTRCNKKVIGARYYN 152 (712)
Q Consensus 78 ~s~~~~~~~~~~~~~--~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~---~~~~~~f~~~n~ki~g~~~~~ 152 (712)
.+|.+-.+....+|+ .+.+|+||+|||||||||++||||.+.-+... ....|. ...+.++ -.-+.+++|
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~-~el~GrdgiDdD~nG~----vdd~~G~nf- 367 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNV-KELHGRKGIDDDNNGN----VDDEYGANF- 367 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccccc-ccccCccccccccCCc----ccccccccc-
Confidence 456665555557776 46789999999999999999999986432110 001111 0000000 001223444
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHH
Q 045363 153 LDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAI 231 (712)
Q Consensus 153 ~~~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 231 (712)
.++ ...+.|..||||||||||||...++.+ +.||||+|+|+++|+++..+ +..+++++||+||+
T Consensus 368 Vd~-------~~~P~D~~GHGTHVAGIIAA~gnN~~G--------i~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~ 432 (639)
T PTZ00262 368 VNN-------DGGPMDDNYHGTHVSGIISAIGNNNIG--------IVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCI 432 (639)
T ss_pred cCC-------CCCCCCCCCcchHHHHHHhccccCCCc--------eeeeecccccceEEEecCCCCccHHHHHHHHHHHH
Confidence 222 135678999999999999998655332 28999999999999998766 78899999999999
Q ss_pred hCCCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCc--------------ccc----CCCceEEEc
Q 045363 232 GDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGT--------------VEN----VAPWIMTVA 293 (712)
Q Consensus 232 ~~g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~p~vitVg 293 (712)
+.|++|||||||+.. ....+..++.+|.++|++||+||||+|..... ++. ..|+||+||
T Consensus 433 ~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVG 509 (639)
T PTZ00262 433 SREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVS 509 (639)
T ss_pred HCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEe
Confidence 999999999999753 34566777889999999999999999864321 111 235666666
Q ss_pred eeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCch
Q 045363 294 ASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQ 373 (712)
Q Consensus 294 a~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~ 373 (712)
|++.+.
T Consensus 510 Av~~d~-------------------------------------------------------------------------- 515 (639)
T PTZ00262 510 NLIKDK-------------------------------------------------------------------------- 515 (639)
T ss_pred eccCCC--------------------------------------------------------------------------
Confidence 643210
Q ss_pred hHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcC
Q 045363 374 DYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKI 453 (712)
Q Consensus 374 ~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~ 453 (712)
.....++.||++|..
T Consensus 516 ---------------------------------------------------------------~~~~s~s~~Snyg~~-- 530 (639)
T PTZ00262 516 ---------------------------------------------------------------NNQYSLSPNSFYSAK-- 530 (639)
T ss_pred ---------------------------------------------------------------CCcccccccccCCCC--
Confidence 000123455666522
Q ss_pred CCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccC
Q 045363 454 TLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATP 533 (712)
Q Consensus 454 ~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~ 533 (712)
++||+|||++|+++.+. +.|..++|||||||||||+||||++++|+|++.+|+++|++||.+
T Consensus 531 -----~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~ 592 (639)
T PTZ00262 531 -----YCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQ 592 (639)
T ss_pred -----cceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCcc
Confidence 34999999999999874 359999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCC-CCcCccccCCCCeee
Q 045363 534 MKTKSDDAELASGS-GQINPTKAVHPGLIY 562 (712)
Q Consensus 534 ~~~~~~~~~~~~G~-G~in~~~A~~~~lv~ 562 (712)
++.. +..++| |+||+.+|++..+-+
T Consensus 593 l~~~----~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 593 LPSL----KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred CCCC----CCccccCcEEcHHHHHHHHHhc
Confidence 7653 333444 899999999966544
|
|
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=430.04 Aligned_cols=400 Identities=22% Similarity=0.223 Sum_probs=251.0
Q ss_pred CCCCCcEEEEEcCCCCCCCCCCcC-CCCCCCCCccccccccCCccccCCceeEEeEeccCCCC-----CCCCCCCCCCCC
Q 045363 95 KAQSNIIVGLLDTGIWVESPSFND-KGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNA-----LDPNTDQKSPVD 168 (712)
Q Consensus 95 ~~G~gv~VgVIDtGid~~Hp~f~~-~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~-----~~~~~~~~~~~d 168 (712)
++|+||+|||||||||+.||+|++ ++.+++...|++.+..+.. .....+...|..+.. ...+.+.....|
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D 76 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP----PGGYYGGGEYTEEIINAALASDNPYDIVPSRD 76 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC----CccccCceEEeHHHHHHHHhcCCccccCcCCC
Confidence 489999999999999999999995 4567888899988765431 111222222201100 011233345678
Q ss_pred CCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-----------CChHHHHHHHHHHHhC----
Q 045363 169 TDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-----------CADMDILAAFDDAIGD---- 233 (712)
Q Consensus 169 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~a~~~---- 233 (712)
..||||||||||||+..++.. +.||||+|+|+++|++...+ +...++++||+|+++.
T Consensus 77 ~~GHGThvAGIiag~~~~~~~--------~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~ 148 (455)
T cd07478 77 ENGHGTHVAGIAAGNGDNNPD--------FKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALEL 148 (455)
T ss_pred CCCchHHHHHHHhcCCCCCCC--------ccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHh
Confidence 999999999999999765333 38999999999999998764 4678999999999874
Q ss_pred -CCcEEEeccCCCCC-CCccchHHHHHHHhhhc-CceEEEecCCCCCCCCccccC-CC----c--eEEEceeccCc----
Q 045363 234 -GVDLISISIGGPSR-SYFDDSISIGSFHAMKK-GILTACSAGNDGPYQGTVENV-AP----W--IMTVAASSIDR---- 299 (712)
Q Consensus 234 -g~dVIN~S~G~~~~-~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~-~p----~--vitVga~~~~~---- 299 (712)
.+.|||||||.+.. ......++.++..+..+ |++||+||||+|....+.... .+ . -+.|+......
T Consensus 149 ~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~~~~~~ei 228 (455)
T cd07478 149 NKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEKGFNLEI 228 (455)
T ss_pred CCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCCcceEEEE
Confidence 47899999998743 33456677777676665 999999999999754333221 00 0 12222211110
Q ss_pred ------eeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCch
Q 045363 300 ------KFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQ 373 (712)
Q Consensus 300 ------~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~ 373 (712)
.+.-.+..+.|+......... -....+...+.. ...|.........-..+.+++..
T Consensus 229 W~~~~d~~~v~i~sP~Ge~~~~i~~~~--~~~~~~~~~~~~------------t~i~v~y~~~~~~~g~~~i~i~~---- 290 (455)
T cd07478 229 WGDFPDRFSVSIISPSGESSGRINPGI--GGSESYKFVFEG------------TTVYVYYYLPEPYTGDQLIFIRF---- 290 (455)
T ss_pred ecCCCCEEEEEEECCCCCccCccCcCC--CcceeEEEEECC------------eEEEEEEcCCCCCCCCeEEEEEc----
Confidence 000111111111110000000 000000111100 00111101000001111111111
Q ss_pred hHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEe------eeeeC--CCCCccccc
Q 045363 374 DYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKT------RVVNT--STAPFIASF 445 (712)
Q Consensus 374 ~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~------~t~~~--~~~~~~a~f 445 (712)
.....|.+-+.+......+...+.++|.-.+...+..++.. ... .+++.. .++.. ...+.++.|
T Consensus 291 --~~~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~~~----~~~--~tit~Pa~~~~vitVga~~~~~~~~~~~ 362 (455)
T cd07478 291 --KNIKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRFLEP----DPY--TTLTIPGTARSVITVGAYNQNNNSIAIF 362 (455)
T ss_pred --cCCCccceEEEEEeccCCCceEEEEecCcCcCCCCCEeecC----CCC--ceEecCCCCCCcEEEEEEeCCCCcccCc
Confidence 33445777777777666555677788876665554433322 221 222221 12222 334569999
Q ss_pred cCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhC------CCCC
Q 045363 446 SSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFH------PDWS 519 (712)
Q Consensus 446 Ss~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------P~ls 519 (712)
|||||+. ++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|++ |.|+
T Consensus 363 Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~ 427 (455)
T cd07478 363 SGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLY 427 (455)
T ss_pred cCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCC
Confidence 9999998 999999999999999999874 359999999999999999999999975 5679
Q ss_pred HHHHHHHHHccccCCCCCCCCCCCCCCCC
Q 045363 520 PAAIKSALMTTATPMKTKSDDAELASGSG 548 (712)
Q Consensus 520 p~~ik~~L~~TA~~~~~~~~~~~~~~G~G 548 (712)
+++||++|++||+++... ++++++||||
T Consensus 428 ~~~ik~~L~~tA~~~~~~-~~pn~~~GyG 455 (455)
T cd07478 428 GEKIKTYLIRGARRRPGD-EYPNPEWGYG 455 (455)
T ss_pred HHHHHHHHHHhCccCCCC-CCCCCCCCCC
Confidence 999999999999998743 5578999998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=405.53 Aligned_cols=270 Identities=25% Similarity=0.255 Sum_probs=203.9
Q ss_pred CCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCCh
Q 045363 94 SKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHG 173 (712)
Q Consensus 94 ~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHG 173 (712)
+++|+||+|+|||||||.+||++.+... .++.+...+ ... .....|..+||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~---------------------~~l~~~~~~-~~~-------~~~~~d~~gHG 51 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQAS---------------------GDLPGNVNV-LGD-------LDGGSGGGDEG 51 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccC---------------------CCCCcceee-ccc-------cCCCCCCCchH
Confidence 5799999999999999999986532211 111111111 111 12455788999
Q ss_pred hHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCC-ccc
Q 045363 174 THTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGPSRSY-FDD 252 (712)
Q Consensus 174 ThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~-~~~ 252 (712)
||||||| .||||+|+|+.+|+. ...+++++||+||++.|++|||||||....++ .+.
T Consensus 52 T~vAgii------------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~ 109 (275)
T cd05562 52 RAMLEII------------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDG 109 (275)
T ss_pred HHHHHHH------------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCC
Confidence 9999999 388999999999874 34788999999999999999999999865443 344
Q ss_pred hHHHHHHHhhhc-CceEEEecCCCCCCC-CccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeee
Q 045363 253 SISIGSFHAMKK-GILTACSAGNDGPYQ-GTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPL 330 (712)
Q Consensus 253 ~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l 330 (712)
.+..++.++.++ |++||+||||+|... ...+...|++|+|||++.........
T Consensus 110 ~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------------------------- 164 (275)
T cd05562 110 PIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------------------------- 164 (275)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc-------------------------
Confidence 577777888887 999999999999854 33467789999999986542110000
Q ss_pred EecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhh
Q 045363 331 TNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEV 410 (712)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 410 (712)
|. +..
T Consensus 165 -------------------~~-----------------------------~~~--------------------------- 169 (275)
T cd05562 165 -------------------DP-----------------------------APG--------------------------- 169 (275)
T ss_pred -------------------cc-----------------------------ccC---------------------------
Confidence 00 000
Q ss_pred HHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCC-cEEeeecCCccCCCCCCCCCcc
Q 045363 411 GIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGL-DILAAYSELASVTGLPGDRRIV 489 (712)
Q Consensus 411 g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~ 489 (712)
......+.|+++||+. ++++||||+|||. ++.+.+.. .
T Consensus 170 --------------------------~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-------------~ 208 (275)
T cd05562 170 --------------------------GTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-------------D 208 (275)
T ss_pred --------------------------CCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-------------C
Confidence 0011345678899987 8899999999975 33444322 3
Q ss_pred ceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccCC
Q 045363 490 PFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAVH 557 (712)
Q Consensus 490 ~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~~ 557 (712)
.|..++|||||||||||++|||+|++|+|++++||++|++||+++.. +..+..||||+||+.+|++
T Consensus 209 ~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~--~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 209 GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE--PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC--CCCCCCcCcCcccHHHHhh
Confidence 58999999999999999999999999999999999999999998864 3367889999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=400.37 Aligned_cols=243 Identities=29% Similarity=0.395 Sum_probs=198.0
Q ss_pred ccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCC
Q 045363 91 KRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTD 170 (712)
Q Consensus 91 ~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~ 170 (712)
|+.+++|+||+|||||||||.+||+|.+.. ...+| ... ....|..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~--------------------------~~~~~-~~~--------~~~~d~~ 45 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK--------------------------ERTNW-TNE--------KTLDDGL 45 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc--------------------------ccccc-CCC--------CCCCCCC
Confidence 899999999999999999999999996420 01122 111 2345778
Q ss_pred CChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCC
Q 045363 171 GHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSRSY 249 (712)
Q Consensus 171 gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~ 249 (712)
+|||||||||+|+.. .+.||||+|+|+.+|++.+.+ ...++++++++||++++++|||||||... +
T Consensus 46 gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--~ 112 (255)
T cd07479 46 GHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--F 112 (255)
T ss_pred CcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC--C
Confidence 999999999998742 128999999999999998766 56778999999999999999999999863 2
Q ss_pred ccchHHHHHHHhhhcCceEEEecCCCCCCCCc--cccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCce
Q 045363 250 FDDSISIGSFHAMKKGILTACSAGNDGPYQGT--VENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAM 327 (712)
Q Consensus 250 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 327 (712)
.+.++..++.++.++|++||+||||+|+...+ .+...+++|+|||++.+
T Consensus 113 ~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~----------------------------- 163 (255)
T cd07479 113 MDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD----------------------------- 163 (255)
T ss_pred CCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC-----------------------------
Confidence 34556666778889999999999999975433 35566889999875422
Q ss_pred eeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeC
Q 045363 328 YPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVV 407 (712)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~ 407 (712)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcC----CCCcccCcEEeCCCcEEeeecCCccCCCCC
Q 045363 408 PEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKI----TLNILKPDIAAPGLDILAAYSELASVTGLP 483 (712)
Q Consensus 408 ~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 483 (712)
+.++.|||+|++.. ..+++||||.|||.+|+++...
T Consensus 164 --------------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~-------- 203 (255)
T cd07479 164 --------------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK-------- 203 (255)
T ss_pred --------------------------------CccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC--------
Confidence 36788999996532 2678999999999999987543
Q ss_pred CCCCccceEeeecccchhHHHHHHHHHHHhhCC----CCCHHHHHHHHHccccCCC
Q 045363 484 GDRRIVPFNILSGTSMACPHAAAAAAYVKSFHP----DWSPAAIKSALMTTATPMK 535 (712)
Q Consensus 484 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P----~lsp~~ik~~L~~TA~~~~ 535 (712)
..|..++|||||||||||++|||+|++| .++|.+||++|++||++++
T Consensus 204 -----~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 204 -----GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred -----CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 3488999999999999999999999998 7999999999999999875
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-48 Score=407.15 Aligned_cols=286 Identities=29% Similarity=0.273 Sum_probs=189.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHH
Q 045363 97 QSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHT 176 (712)
Q Consensus 97 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThV 176 (712)
|+||+|+|||||||.+||||.+.... .|...++ ...++. .+++........+.|.+||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~d-------~~~~~~-------~g~d~~~~~~~~~~D~~gHGThv 62 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKFD-------YKAYLL-------PGMDKWGGFYVIMYDFFSHGTSC 62 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----CcccccC-------cCCCcc-------CCcCCCCCccCCCCCccccchhH
Confidence 89999999999999999999753210 1110000 000111 11111111123567899999999
Q ss_pred HHHhccCCCCCCccccc-ccceeeeecCCCeEEEEEeecCCC-CChHHHHH-------HHHHH--HhCCCcEEEeccCCC
Q 045363 177 SSTAAGETVKGASLYGI-AQGTARGGVPSARIAMYKVCWSGG-CADMDILA-------AFDDA--IGDGVDLISISIGGP 245 (712)
Q Consensus 177 Agiiag~~~~~~~~~G~-~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~a--~~~g~dVIN~S~G~~ 245 (712)
||||||+.....+.+++ ....+.||||+|+|+.+|++...+ .....+.+ +++|+ .+++++|||||||..
T Consensus 63 AGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~ 142 (311)
T cd07497 63 ASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGIS 142 (311)
T ss_pred HHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcC
Confidence 99999986533222211 112348999999999999997543 32222222 34443 367999999999986
Q ss_pred CCCCc-----cchHHHHHHH-hhhcCceEEEecCCCCCCCC--ccccCCCceEEEceeccCceeEEEEEeCCCceEeeee
Q 045363 246 SRSYF-----DDSISIGSFH-AMKKGILTACSAGNDGPYQG--TVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGIS 317 (712)
Q Consensus 246 ~~~~~-----~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~ 317 (712)
...+. .+..+..... +.++|+++|+||||+|+... ..+..++++|+|||++..+..+...
T Consensus 143 ~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~------------ 210 (311)
T cd07497 143 NFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL------------ 210 (311)
T ss_pred CCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh------------
Confidence 32211 1222222222 24889999999999997643 3456789999999986431100000
Q ss_pred eecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCccc
Q 045363 318 INTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAI 397 (712)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~ 397 (712)
... + .
T Consensus 211 ------------~~~-----------------~--------------------------~-------------------- 215 (311)
T cd07497 211 ------------FGY-----------------L--------------------------P-------------------- 215 (311)
T ss_pred ------------hcc-----------------c--------------------------c--------------------
Confidence 000 0 0
Q ss_pred ceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCc
Q 045363 398 ATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELA 477 (712)
Q Consensus 398 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 477 (712)
...+.++.||||||+. ++++||||+|||++|+++.+...
T Consensus 216 ---------------------------------------~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~ 254 (311)
T cd07497 216 ---------------------------------------GGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLD 254 (311)
T ss_pred ---------------------------------------CCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCC
Confidence 1235789999999998 89999999999999999876432
Q ss_pred cCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCC------CCCHHHHHHHHHccc
Q 045363 478 SVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHP------DWSPAAIKSALMTTA 531 (712)
Q Consensus 478 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P------~lsp~~ik~~L~~TA 531 (712)
.... ......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 255 ~~~~---~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 255 SGGA---LDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CCcc---cCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 1000 11224699999999999999999999999876 589999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=414.24 Aligned_cols=308 Identities=30% Similarity=0.352 Sum_probs=231.1
Q ss_pred hhccCCC-CCCCcEEEEEcCCCCCCCCCCcCCCCCCCCC-----ccccccccCCccccCCceeEEeEeccCCCCCCCCCC
Q 045363 89 LQKRSSK-AQSNIIVGLLDTGIWVESPSFNDKGFGPPPA-----KWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTD 162 (712)
Q Consensus 89 ~~~~~~~-~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~-----~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~ 162 (712)
.+|+++. +|+||+|+|||||||++||+|.+....+... .+...+..+.... .+.+++.+++| .++.. +
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~----~ 74 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKY-YNEKVPFAYNY-ADNND----D 74 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcc-cccCCCeeEcC-CCCCC----c
Confidence 3788877 9999999999999999999998764332111 1222222221111 67888899998 54421 1
Q ss_pred CCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecC--CC-CChHHHHHHHHHHHhCCCcEEE
Q 045363 163 QKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWS--GG-CADMDILAAFDDAIGDGVDLIS 239 (712)
Q Consensus 163 ~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~g-~~~~~i~~ai~~a~~~g~dVIN 239 (712)
.....+..+|||||||||+|...+.. ....+.||||+|+|+.+|+++. .+ .....+++|++++++.|++|||
T Consensus 75 ~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin 149 (346)
T cd07475 75 ILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVIN 149 (346)
T ss_pred cCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 11245788999999999999875421 1123499999999999999973 33 7778899999999999999999
Q ss_pred eccCCCCCC-CccchHHHHHHHhhhcCceEEEecCCCCCCCCcc----------------ccCCCceEEEceeccCceeE
Q 045363 240 ISIGGPSRS-YFDDSISIGSFHAMKKGILTACSAGNDGPYQGTV----------------ENVAPWIMTVAASSIDRKFV 302 (712)
Q Consensus 240 ~S~G~~~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~----------------~~~~p~vitVga~~~~~~~~ 302 (712)
||||..... .....+..++.++.++|++||+||||+|...... +...+++|+||+++...
T Consensus 150 ~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~~--- 226 (346)
T cd07475 150 MSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKKV--- 226 (346)
T ss_pred ECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccccc---
Confidence 999987422 3456667778888999999999999998654221 12335555555532100
Q ss_pred EEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCc
Q 045363 303 TAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQG 382 (712)
Q Consensus 303 ~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga 382 (712)
T Consensus 227 -------------------------------------------------------------------------------- 226 (346)
T cd07475 227 -------------------------------------------------------------------------------- 226 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcE
Q 045363 383 AGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDI 462 (712)
Q Consensus 383 ~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI 462 (712)
.......++.||+|||+. .+++||||
T Consensus 227 ----------------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdi 252 (346)
T cd07475 227 ----------------------------------------------------PNPNGGQMSGFSSWGPTP--DLDLKPDI 252 (346)
T ss_pred ----------------------------------------------------CCCCCCccCCCcCCCCCc--ccCcCCeE
Confidence 002335788999999998 89999999
Q ss_pred EeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHHccccCC
Q 045363 463 AAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSF----HPDWSPAA----IKSALMTTATPM 534 (712)
Q Consensus 463 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~lsp~~----ik~~L~~TA~~~ 534 (712)
+|||.+|+++... ..|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+.
T Consensus 253 ~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~ 319 (346)
T cd07475 253 TAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPP 319 (346)
T ss_pred EeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcc
Confidence 9999999998653 35889999999999999999999998 78999876 788999999953
Q ss_pred CCC----CCCCCCCCCCCCcCccccCC
Q 045363 535 KTK----SDDAELASGSGQINPTKAVH 557 (712)
Q Consensus 535 ~~~----~~~~~~~~G~G~in~~~A~~ 557 (712)
... ..+.+.++|+|+||+++|++
T Consensus 320 ~~~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 320 LDSEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred cccCCCCccCCccccCcchhcHHHhhC
Confidence 322 33467889999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=398.78 Aligned_cols=284 Identities=32% Similarity=0.443 Sum_probs=225.2
Q ss_pred hhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCC--CCCCCCC
Q 045363 88 KLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALD--PNTDQKS 165 (712)
Q Consensus 88 ~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~--~~~~~~~ 165 (712)
+.+|+.+++|+||+|||||+|||++||+|.+... .+.++.+.++|+.+.+.. ...+...
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~-------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~ 63 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG-------------------PGCKVAGGYDFVGDDYDGTNPPVPDDD 63 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC-------------------CCceeccccccCCcccccccCCCCCCC
Confidence 3899999999999999999999999999986421 112233333441222110 0122245
Q ss_pred CCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCC
Q 045363 166 PVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGG 244 (712)
Q Consensus 166 ~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~ 244 (712)
+.|..+|||||||||+|+..+ .| +.||||+|+|+.+|+++..+ .....+++++++|++++++|||||||.
T Consensus 64 ~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~ 134 (312)
T cd07489 64 PMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGG 134 (312)
T ss_pred CCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCc
Confidence 567799999999999998754 12 28999999999999998655 667789999999999999999999998
Q ss_pred CCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCC---ccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecC
Q 045363 245 PSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQG---TVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTF 321 (712)
Q Consensus 245 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 321 (712)
.. .+....+...+.++.++|+++|+||||+|.... ..+...+++|+||+++
T Consensus 135 ~~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------------- 188 (312)
T cd07489 135 PS-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------------- 188 (312)
T ss_pred CC-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------------------
Confidence 74 233466777777888999999999999986532 2345667888887632
Q ss_pred CCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceee
Q 045363 322 SPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLI 401 (712)
Q Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 401 (712)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCC
Q 045363 402 AGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTG 481 (712)
Q Consensus 402 p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 481 (712)
+.||++||+. +...||||+|||.+++++++..
T Consensus 189 -----------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~----- 220 (312)
T cd07489 189 -----------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLA----- 220 (312)
T ss_pred -----------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCC-----
Confidence 4578999998 7899999999999999987651
Q ss_pred CCCCCCccceEeeecccchhHHHHHHHHHHHhhC-CCCCHHHHHHHHHccccCCCCC-C------CCCCCCCCCCCcCcc
Q 045363 482 LPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFH-PDWSPAAIKSALMTTATPMKTK-S------DDAELASGSGQINPT 553 (712)
Q Consensus 482 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-P~lsp~~ik~~L~~TA~~~~~~-~------~~~~~~~G~G~in~~ 553 (712)
...|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++... . ..+..++|||+||++
T Consensus 221 ------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 294 (312)
T cd07489 221 ------GGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAY 294 (312)
T ss_pred ------CCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHH
Confidence 1258999999999999999999999999 9999999999999999987654 1 134578999999999
Q ss_pred ccCCCC
Q 045363 554 KAVHPG 559 (712)
Q Consensus 554 ~A~~~~ 559 (712)
+|++..
T Consensus 295 ~a~~~~ 300 (312)
T cd07489 295 KALYAT 300 (312)
T ss_pred HHhcCC
Confidence 999954
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-46 Score=384.38 Aligned_cols=247 Identities=26% Similarity=0.306 Sum_probs=203.3
Q ss_pred hccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCC
Q 045363 90 QKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDT 169 (712)
Q Consensus 90 ~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~ 169 (712)
+|+.+++|+||+|||||+|||.+||+|.+..+.+ ...+ .. ......|.
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~------------------------~~~~-~~-------~~~~~~~~ 49 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTP------------------------LFTY-AA-------AACQDGGA 49 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccc------------------------ccCc-cc-------cCCCCCCC
Confidence 7999999999999999999999999997642211 0011 10 11244567
Q ss_pred CCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHhCCCcEEEeccCCCCC
Q 045363 170 DGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG--CADMDILAAFDDAIGDGVDLISISIGGPSR 247 (712)
Q Consensus 170 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~ 247 (712)
.+|||||||||+|+..+ .+.||||+|+|+.+|++...+ ++..++++||+||+++|++|||||||....
T Consensus 50 ~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~ 119 (267)
T cd07476 50 SAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQ 119 (267)
T ss_pred CCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCC
Confidence 89999999999987532 138999999999999997654 446789999999999999999999997632
Q ss_pred -CCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCc
Q 045363 248 -SYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKA 326 (712)
Q Consensus 248 -~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 326 (712)
......+..++..+.++|++||+||||+|......+...|++|+|||++.+
T Consensus 120 ~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 171 (267)
T cd07476 120 TGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD---------------------------- 171 (267)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC----------------------------
Confidence 234566778888899999999999999998877788888999999986422
Q ss_pred eeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEe
Q 045363 327 MYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFV 406 (712)
Q Consensus 327 ~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i 406 (712)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCC
Q 045363 407 VPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDR 486 (712)
Q Consensus 407 ~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 486 (712)
+.++.||++|+.. .||||+|||.+|+++.+.
T Consensus 172 ---------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~----------- 202 (267)
T cd07476 172 ---------------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG----------- 202 (267)
T ss_pred ---------------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC-----------
Confidence 2456789999764 388999999999998764
Q ss_pred CccceEeeecccchhHHHHHHHHHHHhhCCC----CCHHHHHHHHHccccCCCCC
Q 045363 487 RIVPFNILSGTSMACPHAAAAAAYVKSFHPD----WSPAAIKSALMTTATPMKTK 537 (712)
Q Consensus 487 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~----lsp~~ik~~L~~TA~~~~~~ 537 (712)
+.|..++|||||||||||++|||+|++|. ++|++||++|++||+++...
T Consensus 203 --~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 203 --GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred --CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 35899999999999999999999999887 89999999999999998764
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=388.94 Aligned_cols=282 Identities=37% Similarity=0.538 Sum_probs=217.8
Q ss_pred CCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCC-------CCCCCCCC
Q 045363 97 QSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNT-------DQKSPVDT 169 (712)
Q Consensus 97 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~-------~~~~~~d~ 169 (712)
|+||+|||||+|||++||+|.+..+ .+.++...++|.......... ......|.
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF-------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDA 61 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC-------------------CCCceeeeeECccCCCCcccccccccccccCCCCCC
Confidence 8999999999999999999975421 344555566662222111000 01124568
Q ss_pred CCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCC
Q 045363 170 DGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSRS 248 (712)
Q Consensus 170 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~ 248 (712)
.+|||||||+|+|...+.. .+.||||+|+|+.+|++...+ +...+++++|+++++++++|||||||.....
T Consensus 62 ~~HGT~vAgiiag~~~n~~--------~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~ 133 (295)
T cd07474 62 TGHGTHVAGIIAGNGVNVG--------TIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG 133 (295)
T ss_pred CCcHHHHHHHHhcCCCccC--------ceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC
Confidence 8999999999999875522 238999999999999998544 7888999999999999999999999986422
Q ss_pred CccchHHHHHHHhhhcCceEEEecCCCCCCCCcc--ccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCc
Q 045363 249 YFDDSISIGSFHAMKKGILTACSAGNDGPYQGTV--ENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKA 326 (712)
Q Consensus 249 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 326 (712)
..+.+..++.++.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 134 -~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~-------------------------- 186 (295)
T cd07474 134 -PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV-------------------------- 186 (295)
T ss_pred -CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc--------------------------
Confidence 456677778889999999999999998765544 556799999998641100
Q ss_pred eeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEe
Q 045363 327 MYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFV 406 (712)
Q Consensus 327 ~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i 406 (712)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCcccccc-CCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCC
Q 045363 407 VPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFS-SRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGD 485 (712)
Q Consensus 407 ~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fS-s~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 485 (712)
........|+ +.|++. ...+||||+|||.+|.+++...
T Consensus 187 ------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~--------- 225 (295)
T cd07474 187 ------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS--------- 225 (295)
T ss_pred ------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC---------
Confidence 0011233444 445555 7889999999999999987641
Q ss_pred CCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCC--CCCCCCCCCCCCcCcccc
Q 045363 486 RRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTK--SDDAELASGSGQINPTKA 555 (712)
Q Consensus 486 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~--~~~~~~~~G~G~in~~~A 555 (712)
...|..++|||||||+|||++|||+|++|+|++++||++|++||++.... ..+++..+|+|+||+.+|
T Consensus 226 --~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 226 --GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred --CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 24589999999999999999999999999999999999999999998776 223467899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=390.13 Aligned_cols=268 Identities=26% Similarity=0.367 Sum_probs=189.9
Q ss_pred CCcEEEEEcCCCCCCCCCCcCCCCCCCCC-cccccccc---------CCcccc--CCceeEEeEeccCCCCCCCCCCCCC
Q 045363 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPA-KWKGKCVT---------GANFTR--CNKKVIGARYYNLDNALDPNTDQKS 165 (712)
Q Consensus 98 ~gv~VgVIDtGid~~Hp~f~~~~~~~~~~-~~~g~~~~---------~~~f~~--~n~ki~g~~~~~~~~~~~~~~~~~~ 165 (712)
|+|+|||||||||++||+|++..+..... ...|.... |.+|.. ..+++++...+........+.+...
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNG 80 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccccccccCC
Confidence 68999999999999999998754321110 11121111 222221 1111221111100000001122334
Q ss_pred CCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhCCCcEEEeccCCC
Q 045363 166 PVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGP 245 (712)
Q Consensus 166 ~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S~G~~ 245 (712)
+.+..+|||||||||+|...++.+ +.||||+|+|+.+|++........++++||+||++.|++|||||||..
T Consensus 81 ~~~~~gHGT~VAGiIaa~~~n~~g--------~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~ 152 (291)
T cd07483 81 PISDADHGTHVAGIIAAVRDNGIG--------IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKS 152 (291)
T ss_pred CCCCCCcHHHHHHHHhCcCCCCCc--------eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 557899999999999998755332 289999999999999876557778999999999999999999999975
Q ss_pred CCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCcc---c--------cCCCceEEEceeccCceeEEEEEeCCCceEe
Q 045363 246 SRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTV---E--------NVAPWIMTVAASSIDRKFVTAVKLGNGMRTS 314 (712)
Q Consensus 246 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---~--------~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 314 (712)
... ....+..++..+.++|+++|+||||+|...... + ...+++|+|||++..
T Consensus 153 ~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~---------------- 215 (291)
T cd07483 153 FSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK---------------- 215 (291)
T ss_pred CCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc----------------
Confidence 322 334566777788999999999999998643211 1 123556666654321
Q ss_pred eeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCC
Q 045363 315 GISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTD 394 (712)
Q Consensus 315 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 394 (712)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeec
Q 045363 395 IAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYS 474 (712)
Q Consensus 395 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 474 (712)
.....++.||++|+. +|||.|||.+|+++.+
T Consensus 216 ------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~APG~~i~s~~~ 246 (291)
T cd07483 216 ------------------------------------------YENNLVANFSNYGKK-------NVDVFAPGERIYSTTP 246 (291)
T ss_pred ------------------------------------------CCcccccccCCCCCC-------ceEEEeCCCCeEeccC
Confidence 011257889999974 4599999999999876
Q ss_pred CCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 475 ELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 475 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
. ..|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 247 ~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 247 D-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred c-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 4 35899999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=371.53 Aligned_cols=234 Identities=26% Similarity=0.403 Sum_probs=192.0
Q ss_pred cEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHHH
Q 045363 100 IIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST 179 (712)
Q Consensus 100 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgi 179 (712)
|+|||||||||.+||+|++... ..+++ .. ....|..+||||||||
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~-------------------------~~~~~-~~---------~~~~~~~~HGT~vAgi 45 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI-------------------------ARLFF-AG---------PGAPAPSAHGTAVASL 45 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc-------------------------ccccC-CC---------CCCCCCCCCHHHHHHH
Confidence 7899999999999999965321 11111 11 1345678999999999
Q ss_pred hccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC----CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCccchHH
Q 045363 180 AAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG----CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSIS 255 (712)
Q Consensus 180 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~~~~~~ 255 (712)
|+|+..+. .||||+|+|+.+|++...+ ++..++++||+||++.|++|||||||... ...+.
T Consensus 46 ia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~----~~~l~ 110 (239)
T cd05561 46 LAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP----NALLA 110 (239)
T ss_pred HhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC----CHHHH
Confidence 99885321 6999999999999998642 67788999999999999999999999753 34566
Q ss_pred HHHHHhhhcCceEEEecCCCCCCC-CccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEecc
Q 045363 256 IGSFHAMKKGILTACSAGNDGPYQ-GTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGA 334 (712)
Q Consensus 256 ~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~ 334 (712)
.++.++.++|++||+||||+|... ..++...+++|+|++++.+
T Consensus 111 ~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~------------------------------------ 154 (239)
T cd05561 111 AAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR------------------------------------ 154 (239)
T ss_pred HHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC------------------------------------
Confidence 777789999999999999998753 3566677899999875422
Q ss_pred cccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHH
Q 045363 335 RAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKI 414 (712)
Q Consensus 335 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l 414 (712)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEee
Q 045363 415 DQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNIL 494 (712)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 494 (712)
+.++.||++|+.. ||+|||.+|+++.+. ..|..+
T Consensus 155 -------------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~-------------~~~~~~ 188 (239)
T cd05561 155 -------------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPG-------------GGYRYV 188 (239)
T ss_pred -------------------------CCccccCCCCCcc--------eEEccccceecccCC-------------CCEEEe
Confidence 2567899999977 999999999997653 358999
Q ss_pred ecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCC
Q 045363 495 SGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSG 548 (712)
Q Consensus 495 sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G 548 (712)
+|||||||||||++|||+|++| +++++||++|++||+++... ..+..||||
T Consensus 189 sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~--~~d~~~G~G 239 (239)
T cd05561 189 SGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPP--GRDPVFGYG 239 (239)
T ss_pred CCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC--CcCCCcCCC
Confidence 9999999999999999999999 99999999999999988753 367789998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=374.46 Aligned_cols=242 Identities=31% Similarity=0.368 Sum_probs=196.0
Q ss_pred CcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCC-CCCCCCChhHHH
Q 045363 99 NIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKS-PVDTDGHGTHTS 177 (712)
Q Consensus 99 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~-~~d~~gHGThVA 177 (712)
||+||||||||+++||+|....+. .+.++.+.++| .+.. .. ..|..+||||||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~------------------~~~~i~~~~~~-~~~~-------~~~~~~~~~HGT~va 54 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLF------------------KNLRILGEYDF-VDNS-------NNTNYTDDDHGTAVL 54 (261)
T ss_pred CCEEEEEccCCCccCcchhhhccc------------------cCCceeeeecC-ccCC-------CCCCCCCCCchhhhh
Confidence 799999999999999999522110 34567777888 4432 12 367889999999
Q ss_pred HHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC---CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCc----
Q 045363 178 STAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG---CADMDILAAFDDAIGDGVDLISISIGGPSRSYF---- 250 (712)
Q Consensus 178 giiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~---- 250 (712)
|+|+|+.. +.+.||||+|+|+.+|+..... .....+++|++++.+.+++|||||||.......
T Consensus 55 giia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~ 124 (261)
T cd07493 55 STMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSY 124 (261)
T ss_pred eeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccc
Confidence 99998853 2248999999999999876432 345678999999999999999999998742211
Q ss_pred --------cchHHHHHHHhhhcCceEEEecCCCCCC---CCccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeee
Q 045363 251 --------DDSISIGSFHAMKKGILTACSAGNDGPY---QGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISIN 319 (712)
Q Consensus 251 --------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~ 319 (712)
...+..++..+.++|++||+||||+|.. ....+...+++|+|||.+.+
T Consensus 125 ~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~--------------------- 183 (261)
T cd07493 125 TYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN--------------------- 183 (261)
T ss_pred ccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC---------------------
Confidence 1346677788899999999999999976 34566778999999986422
Q ss_pred cCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccce
Q 045363 320 TFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIAT 399 (712)
Q Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 399 (712)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccC
Q 045363 400 LIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASV 479 (712)
Q Consensus 400 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 479 (712)
+.++.||++||+. ++++||||+|||.+|++....
T Consensus 184 ----------------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~---- 217 (261)
T cd07493 184 ----------------------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD---- 217 (261)
T ss_pred ----------------------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC----
Confidence 2567899999998 899999999999999885432
Q ss_pred CCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 480 TGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 480 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
..|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 218 ---------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 ---------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred ---------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=374.79 Aligned_cols=247 Identities=32% Similarity=0.422 Sum_probs=194.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHH
Q 045363 97 QSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHT 176 (712)
Q Consensus 97 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThV 176 (712)
|+||+|||||+|||++||+|.+. + .+..... +...+.+ .+. ......+.|..+|||||
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~-~-------~~~~~~~---------~~~~~~~-~d~----~~~~~~~~d~~~HGT~v 58 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK-Y-------RGWGGGS---------ADHDYNW-FDP----VGNTPLPYDDNGHGTHT 58 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc-c-------cccCCCC---------ccccccc-ccC----CCCCCCCCCCCCchhhh
Confidence 89999999999999999999864 1 1100000 0000011 010 11123456788999999
Q ss_pred HHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHh------------CCCcEEEeccCC
Q 045363 177 SSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIG------------DGVDLISISIGG 244 (712)
Q Consensus 177 Agiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~dVIN~S~G~ 244 (712)
||||+|...++ ...||||+|+|+.+|+++..++...+++++++++++ .+++|||||||.
T Consensus 59 agii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~ 129 (264)
T cd07481 59 MGTMVGNDGDG---------QQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGG 129 (264)
T ss_pred hhheeecCCCC---------CceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCc
Confidence 99999875331 127999999999999998877888899999999975 789999999998
Q ss_pred CCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCc---cccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecC
Q 045363 245 PSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGT---VENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTF 321 (712)
Q Consensus 245 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 321 (712)
... ....+..++..+.++|++||+||||++..... .+...|++|+||+++.+
T Consensus 130 ~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~----------------------- 184 (264)
T cd07481 130 PSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN----------------------- 184 (264)
T ss_pred CCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-----------------------
Confidence 743 24455566667888999999999999865432 45667899999875422
Q ss_pred CCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceee
Q 045363 322 SPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLI 401 (712)
Q Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 401 (712)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCC
Q 045363 402 AGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTG 481 (712)
Q Consensus 402 p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 481 (712)
+.++.||++||.. .+++||||+|||.+|.++.+.
T Consensus 185 --------------------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~------ 218 (264)
T cd07481 185 --------------------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG------ 218 (264)
T ss_pred --------------------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecCC------
Confidence 3678899999998 799999999999999998764
Q ss_pred CCCCCCccceEeeecccchhHHHHHHHHHHHhhCCC--CCHHHHHHHHHcccc
Q 045363 482 LPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPD--WSPAAIKSALMTTAT 532 (712)
Q Consensus 482 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~--lsp~~ik~~L~~TA~ 532 (712)
..|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 219 -------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 219 -------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred -------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=380.14 Aligned_cols=220 Identities=27% Similarity=0.312 Sum_probs=166.1
Q ss_pred CCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC---CChHHHHHHHHHHHhCCCcEEEeccC
Q 045363 167 VDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG---CADMDILAAFDDAIGDGVDLISISIG 243 (712)
Q Consensus 167 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIN~S~G 243 (712)
.|+.+|||||||||||+..++. .+.||||+|+|+++|+++... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~~--------~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEEP--------ERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCCC--------ceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 4678999999999999864432 238999999999999987532 23457999999999999999999999
Q ss_pred CCCCCCccchHHHHHH-HhhhcCceEEEecCCCCCCCCccc--c-CCCceEEEceeccCceeEEEEEeCCCceEeeeeee
Q 045363 244 GPSRSYFDDSISIGSF-HAMKKGILTACSAGNDGPYQGTVE--N-VAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISIN 319 (712)
Q Consensus 244 ~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~~~--~-~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~ 319 (712)
..........+..++. .+.++|+++|+||||+|+...++. . ..+++|+|||+.....+...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~--------------- 318 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE--------------- 318 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc---------------
Confidence 8742112222333333 345689999999999998766543 2 46899999996432100000
Q ss_pred cCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccce
Q 045363 320 TFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIAT 399 (712)
Q Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 399 (712)
|.+.
T Consensus 319 --------y~~~-------------------------------------------------------------------- 322 (412)
T cd04857 319 --------YSLR-------------------------------------------------------------------- 322 (412)
T ss_pred --------cccc--------------------------------------------------------------------
Confidence 0000
Q ss_pred eeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccC
Q 045363 400 LIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASV 479 (712)
Q Consensus 400 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 479 (712)
....+.++.||||||+. ++.+||||+|||..|.+....
T Consensus 323 ------------------------------------~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~---- 360 (412)
T cd04857 323 ------------------------------------EKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNW---- 360 (412)
T ss_pred ------------------------------------cccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccC----
Confidence 01124688999999999 999999999999999875221
Q ss_pred CCCCCCCCccceEeeecccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHccccCC
Q 045363 480 TGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKS----FHPDWSPAAIKSALMTTATPM 534 (712)
Q Consensus 480 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~lsp~~ik~~L~~TA~~~ 534 (712)
....|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 361 -------~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 361 -------TLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred -------CCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 114589999999999999999999985 478999999999999999874
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=370.15 Aligned_cols=263 Identities=28% Similarity=0.356 Sum_probs=201.5
Q ss_pred hhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCC
Q 045363 89 LQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVD 168 (712)
Q Consensus 89 ~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d 168 (712)
.+|..+++|+||+|+|||||||++||+|.+...... |. .....+.+ .... ........|
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~-------------~~----~~~~~~~~-~~~~---~~~~~~~~~ 59 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDG-------------YD----PAVNGYNF-VPNV---GDIDNDVSV 59 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCC-------------cc----cccCCccc-cccc---CCcCCCCCC
Confidence 379999999999999999999999999987511100 00 00000001 0000 001134456
Q ss_pred CCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCC
Q 045363 169 TDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSR 247 (712)
Q Consensus 169 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~ 247 (712)
..+|||||||||+|+.++.....|.+ .+.|+||+|+|+.+|++...+ ....+++++|++|++.|++|||||||....
T Consensus 60 ~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~ 137 (273)
T cd07485 60 GGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGG 137 (273)
T ss_pred CCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCc
Confidence 78999999999999865533322222 236799999999999998755 777889999999999999999999998753
Q ss_pred CCccchHHHHHHHhhhc-------CceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeec
Q 045363 248 SYFDDSISIGSFHAMKK-------GILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINT 320 (712)
Q Consensus 248 ~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~ 320 (712)
..+...+..++..+.++ |++||+||||++......+...+++|+||+++.+
T Consensus 138 ~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~---------------------- 195 (273)
T cd07485 138 GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN---------------------- 195 (273)
T ss_pred cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC----------------------
Confidence 34555666777777777 9999999999998877667888999999986422
Q ss_pred CCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCccccee
Q 045363 321 FSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATL 400 (712)
Q Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 400 (712)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCC-cEEeeecCCccC
Q 045363 401 IAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGL-DILAAYSELASV 479 (712)
Q Consensus 401 ~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~~ 479 (712)
+.++.||++|+.. ||+|||. .|+++.+...
T Consensus 196 ---------------------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~-- 226 (273)
T cd07485 196 ---------------------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTVPKLD-- 226 (273)
T ss_pred ---------------------------------------CCcCccccCCCce--------EEEeCCCCcccccccccc--
Confidence 2567899999987 9999999 8888876421
Q ss_pred CCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCC-CCHHHHHHHHHcc
Q 045363 480 TGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPD-WSPAAIKSALMTT 530 (712)
Q Consensus 480 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~-lsp~~ik~~L~~T 530 (712)
......|..++|||||||+|||++|||+|++|+ |+++|||++|++|
T Consensus 227 -----~~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 227 -----GDGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred -----CCCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 112346899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=364.99 Aligned_cols=256 Identities=32% Similarity=0.472 Sum_probs=203.7
Q ss_pred CCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHH
Q 045363 97 QSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHT 176 (712)
Q Consensus 97 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThV 176 (712)
|+||+|+|||+||+++||+|.+.... ...+ ... ........|..+|||||
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~-------------------------~~~~-~~~----~~~~~~~~d~~~HGT~v 50 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR-------------------------FADF-VNT----VNGRTTPYDDNGHGTHV 50 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc-------------------------cccc-ccc----ccCCCCCCCCCCchHHH
Confidence 89999999999999999999864211 0111 110 01123556778999999
Q ss_pred HHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhC----CCcEEEeccCCCCC-CCc
Q 045363 177 SSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGD----GVDLISISIGGPSR-SYF 250 (712)
Q Consensus 177 Agiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIN~S~G~~~~-~~~ 250 (712)
||+|+|+..+. .+.+.||||+|+|+.+|+++..+ ....++++||+|+++. +++|||||||.... ...
T Consensus 51 Agiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~ 123 (264)
T cd07487 51 AGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYG 123 (264)
T ss_pred HHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCC
Confidence 99999986542 12249999999999999998876 6778999999999998 99999999998743 345
Q ss_pred cchHHHHHHHhhhcCceEEEecCCCCCCCC--ccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCcee
Q 045363 251 DDSISIGSFHAMKKGILTACSAGNDGPYQG--TVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMY 328 (712)
Q Consensus 251 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 328 (712)
...+..++.++.++|++||+||||++.... ..+...+++|+||+++.+..
T Consensus 124 ~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------------------------- 175 (264)
T cd07487 124 EDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP---------------------------- 175 (264)
T ss_pred CCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC----------------------------
Confidence 677788888999999999999999997765 55667899999998754310
Q ss_pred eeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeCh
Q 045363 329 PLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVP 408 (712)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~ 408 (712)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCc
Q 045363 409 EVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRI 488 (712)
Q Consensus 409 ~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 488 (712)
....++.||++||+. ++++||||+|||.+|++..+..... .....
T Consensus 176 -----------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~----~~~~~ 220 (264)
T cd07487 176 -----------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP----GAGVG 220 (264)
T ss_pred -----------------------------CCccccccccCCCCC--CCCcCCCEEccccceEecccccccc----CCCCC
Confidence 002478899999998 9999999999999999986532100 01223
Q ss_pred cceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 489 VPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 489 ~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
..|..++|||||||+|||++|||+|++|++++++||++|++||+
T Consensus 221 ~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 221 SGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred CceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 56899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=363.83 Aligned_cols=250 Identities=30% Similarity=0.408 Sum_probs=209.4
Q ss_pred CCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCC
Q 045363 78 RTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157 (712)
Q Consensus 78 ~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~ 157 (712)
..|.+..+....+|..+ +|+||+|+|||+||+++||+|... ++...+++ .++.
T Consensus 9 ~~w~~~~~~~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~------------------------~~~~~~~~-~~~~- 61 (260)
T cd07484 9 YQWNLDQIGAPKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV------------------------KFVLGYDF-VDND- 61 (260)
T ss_pred cCCCccccChHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC------------------------Ccccceec-cCCC-
Confidence 46777777777999998 999999999999999999998422 23333444 2221
Q ss_pred CCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCc
Q 045363 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVD 236 (712)
Q Consensus 158 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~d 236 (712)
..+.|..+|||||||||++...+... +.|+||+|+|+.+|+++..+ +...+++++|+++++.+++
T Consensus 62 ------~~~~d~~~HGT~vagii~~~~~~~~~--------~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~ 127 (260)
T cd07484 62 ------SDAMDDNGHGTHVAGIIAAATNNGTG--------VAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAK 127 (260)
T ss_pred ------CCCCCCCCcHHHHHHHHhCccCCCCc--------eEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCe
Confidence 23567889999999999987644322 28999999999999998765 7788899999999999999
Q ss_pred EEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeee
Q 045363 237 LISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGI 316 (712)
Q Consensus 237 VIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 316 (712)
|||||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 128 iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------ 186 (260)
T cd07484 128 VINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------------------ 186 (260)
T ss_pred EEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC------------------
Confidence 9999999864 4456667777888999999999999998888888889999999986432
Q ss_pred eeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcc
Q 045363 317 SINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIA 396 (712)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 396 (712)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCC
Q 045363 397 IATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSEL 476 (712)
Q Consensus 397 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 476 (712)
+.++.||++|+.. |++|||.+|++....
T Consensus 187 -------------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~- 214 (260)
T cd07484 187 -------------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPD- 214 (260)
T ss_pred -------------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCC-
Confidence 2567889999876 999999999988653
Q ss_pred ccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCC
Q 045363 477 ASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPM 534 (712)
Q Consensus 477 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~ 534 (712)
..|..++|||||||+|||++|||++++| |++++||++|++||+++
T Consensus 215 ------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 215 ------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred ------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 3589999999999999999999999999 99999999999999876
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=359.02 Aligned_cols=232 Identities=34% Similarity=0.441 Sum_probs=194.8
Q ss_pred hccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCC
Q 045363 90 QKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDT 169 (712)
Q Consensus 90 ~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~ 169 (712)
+|..+++|+||+|+|||+||+++||+|.+. +...++| ... ....|.
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~-------------------------~~~~~~~-~~~--------~~~~d~ 62 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR-------------------------AIWGADF-VGG--------DPDSDC 62 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC-------------------------eeeeeec-CCC--------CCCCCC
Confidence 777889999999999999999999999643 2233334 222 125678
Q ss_pred CCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhC-----CCcEEEeccC
Q 045363 170 DGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGD-----GVDLISISIG 243 (712)
Q Consensus 170 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~-----g~dVIN~S~G 243 (712)
.+|||||||||+++. .||||+|+|+.+|+++..+ ...++++++++++++. +++|||||||
T Consensus 63 ~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g 128 (255)
T cd04077 63 NGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLG 128 (255)
T ss_pred CccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCC
Confidence 899999999999864 6999999999999998875 6778899999999987 4899999999
Q ss_pred CCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCC-CccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCC
Q 045363 244 GPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ-GTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFS 322 (712)
Q Consensus 244 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 322 (712)
... ...+..++.++.++|+++|+||||+|... ...+...|++|+||+++.+
T Consensus 129 ~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------------------------ 180 (255)
T cd04077 129 GGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------------------------ 180 (255)
T ss_pred CCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC------------------------
Confidence 864 45566667788899999999999999765 4556778999999986432
Q ss_pred CCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeee
Q 045363 323 PRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIA 402 (712)
Q Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p 402 (712)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCC
Q 045363 403 GTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGL 482 (712)
Q Consensus 403 ~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~ 482 (712)
+.++.||++||.. ||+|||.+|.++...
T Consensus 181 -------------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~------- 208 (255)
T cd04077 181 -------------------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIG------- 208 (255)
T ss_pred -------------------------------------CCccCcccCCCCC--------cEEeCCCCeEecccC-------
Confidence 2467899999987 999999999998763
Q ss_pred CCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccC
Q 045363 483 PGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATP 533 (712)
Q Consensus 483 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~ 533 (712)
....|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 209 ----~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 209 ----SDTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred ----CCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 12468999999999999999999999999999999999999999975
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=369.48 Aligned_cols=263 Identities=24% Similarity=0.193 Sum_probs=186.5
Q ss_pred cEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHHH
Q 045363 100 IIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST 179 (712)
Q Consensus 100 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgi 179 (712)
.+|||||||||..||+|.+.- .....+ ... .....|..+||||||||
T Consensus 1 p~VaviDtGi~~~hp~l~~~~-------------------------~~~~~~-~~~-------~~~~~d~~gHGT~vAgi 47 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPAL-------------------------AEDDLD-SDE-------PGWTADDLGHGTAVAGL 47 (291)
T ss_pred CEEEEecCCCCCCChhhhhhh-------------------------cccccc-ccC-------CCCcCCCCCChHHHHHH
Confidence 379999999999999997531 111111 111 01156899999999999
Q ss_pred hccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-----CChHHHHHHHHHHHhCC---CcEEEeccCCCCCCCcc
Q 045363 180 AAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-----CADMDILAAFDDAIGDG---VDLISISIGGPSRSYFD 251 (712)
Q Consensus 180 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~dVIN~S~G~~~~~~~~ 251 (712)
|++...++. ...|+||+|+|+.+|++...+ ....++++||+|+++.. ++|||||||........
T Consensus 48 ia~~~~~~~--------~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~ 119 (291)
T cd04847 48 ALYGDLTLP--------GNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDG 119 (291)
T ss_pred HHcCcccCC--------CCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCC
Confidence 997653311 227999999999999998863 45678999999999853 49999999987422111
Q ss_pred --chHHHHH-HHhhhcCceEEEecCCCCCCCCc------------cccCCCceEEEceeccCceeEEEEEeCCCceEeee
Q 045363 252 --DSISIGS-FHAMKKGILTACSAGNDGPYQGT------------VENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGI 316 (712)
Q Consensus 252 --~~~~~a~-~~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 316 (712)
..+..++ ..+.++|++||+||||++..... .+..++++|+|||++.+.........
T Consensus 120 ~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~--------- 190 (291)
T cd04847 120 RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARY--------- 190 (291)
T ss_pred CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccc---------
Confidence 2333333 24568999999999999976543 24556899999998755211000000
Q ss_pred eeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcc
Q 045363 317 SINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIA 396 (712)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 396 (712)
|.
T Consensus 191 ----------------------------------------------------------------~~-------------- 192 (291)
T cd04847 191 ----------------------------------------------------------------SA-------------- 192 (291)
T ss_pred ----------------------------------------------------------------cc--------------
Confidence 00
Q ss_pred cceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCC
Q 045363 397 IATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSEL 476 (712)
Q Consensus 397 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 476 (712)
......+.||++||.. ++.+||||+|||++|.+.....
T Consensus 193 ----------------------------------------~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~ 230 (291)
T cd04847 193 ----------------------------------------VGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGN 230 (291)
T ss_pred ----------------------------------------cccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCC
Confidence 0001233499999998 9999999999999998864321
Q ss_pred ccCC-----CCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 477 ASVT-----GLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 477 ~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
.... ..........|..++|||||||||||++|||++++|+++|++||++|++||+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 231 AADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 1000 0000122356999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=356.32 Aligned_cols=253 Identities=32% Similarity=0.388 Sum_probs=188.2
Q ss_pred CcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHH
Q 045363 99 NIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSS 178 (712)
Q Consensus 99 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAg 178 (712)
||+|||||+|||++||+|.+.. ....+| ..+. ........|..+|||||||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~-------------------------~~~~~~-~~~~---~~~~~~~~d~~~HGT~vAg 51 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV-------------------------AQWADF-DENR---RISATEVFDAGGHGTHVSG 51 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc-------------------------CCceec-cCCC---CCCCCCCCCCCCcHHHHHH
Confidence 7999999999999999997531 111222 1110 1112345568899999999
Q ss_pred HhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCCCCccchHHHHH
Q 045363 179 TAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGS 258 (712)
Q Consensus 179 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~~~~~~~a~ 258 (712)
||+|+..+ +.+.||||+|+|+.+|++...++...+++++|+|+++.+++|||||||..... .+.+..++
T Consensus 52 iia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~~~~~~ 120 (254)
T cd07490 52 TIGGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDPLEEAV 120 (254)
T ss_pred HHhcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcHHHHHH
Confidence 99998642 22379999999999999988778889999999999999999999999987432 44555444
Q ss_pred HHhhh-cCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEeccccc
Q 045363 259 FHAMK-KGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAA 337 (712)
Q Consensus 259 ~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~ 337 (712)
....+ +|++||+||||++......+...+++|+|||++.+.........
T Consensus 121 ~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~------------------------------ 170 (254)
T cd07490 121 EALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF------------------------------ 170 (254)
T ss_pred HHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC------------------------------
Confidence 44443 69999999999998877778888999999997644210000000
Q ss_pred ccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHH
Q 045363 338 NVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQY 417 (712)
Q Consensus 338 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 417 (712)
|
T Consensus 171 -------------------------------------------g------------------------------------ 171 (254)
T cd07490 171 -------------------------------------------G------------------------------------ 171 (254)
T ss_pred -------------------------------------------c------------------------------------
Confidence 0
Q ss_pred HhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecc
Q 045363 418 INSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGT 497 (712)
Q Consensus 418 ~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 497 (712)
.......+.+|.. .....|||++|||.+|+++... ......|..++||
T Consensus 172 ----------------------~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~---------~~~~~~~~~~~GT 219 (254)
T cd07490 172 ----------------------SSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQG---------ANGDGQYTRLSGT 219 (254)
T ss_pred ----------------------ccccccccCCCCC-ccCCcCceEEeccCCeEccccC---------CCCCCCeeecccH
Confidence 0111222333332 2567899999999999986532 1223569999999
Q ss_pred cchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 498 SMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 498 SmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
|||||+|||++|||+|++|+|++++||++|++||+
T Consensus 220 S~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 220 SMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=363.08 Aligned_cols=252 Identities=24% Similarity=0.323 Sum_probs=184.3
Q ss_pred hhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCC
Q 045363 87 EKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSP 166 (712)
Q Consensus 87 ~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 166 (712)
...+|+.+++|+||+|+||||||+..|| |....+. +. ..+ ..+ .....
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~~-----------------~~~-~~~------~~~~~ 57 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------VR-----------------VVL-APG------ATDPA 57 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------ce-----------------eec-CCC------CCCCC
Confidence 3589999999999999999999999998 6543211 00 011 111 11245
Q ss_pred CCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhCCCcEEEeccCCCC
Q 045363 167 VDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGPS 246 (712)
Q Consensus 167 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S~G~~~ 246 (712)
.|..|||||||+++ .||||+|+|+.+|+++. ...++++||+||++++++|||||||...
T Consensus 58 ~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~ 116 (298)
T cd07494 58 CDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGYDL 116 (298)
T ss_pred CCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecccCC
Confidence 67889999999865 69999999999999864 5577999999999999999999999863
Q ss_pred CCC----------ccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeee
Q 045363 247 RSY----------FDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGI 316 (712)
Q Consensus 247 ~~~----------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 316 (712)
... ....+..++.+|.++|++||+||||++. .+|...|++|+||+++.+.. +..
T Consensus 117 ~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~---- 180 (298)
T cd07494 117 RSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GAR---- 180 (298)
T ss_pred CCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Ccc----
Confidence 111 1345677788889999999999999974 46888999999999754310 000
Q ss_pred eeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcc
Q 045363 317 SINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIA 396 (712)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 396 (712)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcE--------------
Q 045363 397 IATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDI-------------- 462 (712)
Q Consensus 397 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI-------------- 462 (712)
......+.|++ . ..+++.|||+
T Consensus 181 ----------------------------------------~~~~~~~~~~s---~-~~~g~~~pd~~~~~g~~~~~~~~~ 216 (298)
T cd07494 181 ----------------------------------------RASSYASGFRS---K-IYPGRQVPDVCGLVGMLPHAAYLM 216 (298)
T ss_pred ----------------------------------------cccccccCccc---c-cCCCCccCccccccCcCCcccccc
Confidence 00000111111 1 1256667776
Q ss_pred --EeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCC
Q 045363 463 --AAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKT 536 (712)
Q Consensus 463 --~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~ 536 (712)
+|||..|.++..... .. ......|..++|||||||||||++|||+|++|+|++++||.+|++||+++..
T Consensus 217 ~~~APG~~i~~~~~~~~-~~----~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 217 LPVPPGSQLDRSCAAFP-DG----TPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred cccCCCcceeccccCCC-CC----CCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 479999876543210 00 1122469999999999999999999999999999999999999999998766
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=359.66 Aligned_cols=207 Identities=29% Similarity=0.353 Sum_probs=168.1
Q ss_pred CCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHH----------hCC
Q 045363 165 SPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAI----------GDG 234 (712)
Q Consensus 165 ~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~----------~~g 234 (712)
...+..+|||||||||+|...++..+ .||||+|+|+.+|+++..+.+.+++++|++|++ .++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~~~~--------~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~ 137 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNGVGV--------AGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNP 137 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCCCCc--------eeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCC
Confidence 34567899999999999987543322 899999999999999887778899999999998 457
Q ss_pred CcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCC-CccccCCCceEEEceeccCceeEEEEEeCCCceE
Q 045363 235 VDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ-GTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRT 313 (712)
Q Consensus 235 ~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~ 313 (712)
++|||||||..... ...+..++..+.++|++||+||||++... ...+...+++|+||+++.+
T Consensus 138 ~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------- 200 (285)
T cd07496 138 AKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR--------------- 200 (285)
T ss_pred CeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC---------------
Confidence 89999999987421 45667777888999999999999999776 5667778999999986432
Q ss_pred eeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCC
Q 045363 314 SGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPT 393 (712)
Q Consensus 314 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 393 (712)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeee
Q 045363 394 DIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAY 473 (712)
Q Consensus 394 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 473 (712)
+.++.||++|+.. ||.|||.+|.+..
T Consensus 201 ----------------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~ 226 (285)
T cd07496 201 ----------------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDV 226 (285)
T ss_pred ----------------------------------------------CCcccccCCCCCC--------CEEeCCCCccccC
Confidence 3578899999987 9999999999886
Q ss_pred cCCccCC--CCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 045363 474 SELASVT--GLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTT 530 (712)
Q Consensus 474 ~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~T 530 (712)
....... ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 227 NGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 5421100 00011223568999999999999999999999999999999999999986
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=361.10 Aligned_cols=277 Identities=30% Similarity=0.359 Sum_probs=202.7
Q ss_pred CCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCC
Q 045363 93 SSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGH 172 (712)
Q Consensus 93 ~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gH 172 (712)
++++|+||+|||||+|||++||+|.+... .+.+| .++++.....+ .+ ...|..+|
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~~--~~~~~~~~~~~-~~----------~~~d~~~H 56 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTNL--FHRKIVRYDSL-SD----------TKDDVDGH 56 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCcc--CcccEEEeecc-CC----------CCCCCCCC
Confidence 58899999999999999999999976422 11111 34455554444 22 12278999
Q ss_pred hhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCc
Q 045363 173 GTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG--CADMDILAAFDDAIGDGVDLISISIGGPSRSYF 250 (712)
Q Consensus 173 GThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~ 250 (712)
||||||||+|+..+.... ..+.||||+|+|+.+|+++..+ ....++..+++++.+.+++|||||||......
T Consensus 57 GT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~- 130 (293)
T cd04842 57 GTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNG- 130 (293)
T ss_pred cchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCccc-
Confidence 999999999987654311 1238999999999999998765 56677899999999999999999999875321
Q ss_pred cchHHHHHHHh-hh-cCceEEEecCCCCCCCC---ccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCC
Q 045363 251 DDSISIGSFHA-MK-KGILTACSAGNDGPYQG---TVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRK 325 (712)
Q Consensus 251 ~~~~~~a~~~a-~~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 325 (712)
......++.++ .+ +|++||+||||++.... ..+...+++|+|||++.......
T Consensus 131 ~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~---------------------- 188 (293)
T cd04842 131 YTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG---------------------- 188 (293)
T ss_pred cchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc----------------------
Confidence 12222233222 23 79999999999997764 56678899999999865421000
Q ss_pred ceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEE
Q 045363 326 AMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTF 405 (712)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~ 405 (712)
..|..
T Consensus 189 ----------------------~~~~~----------------------------------------------------- 193 (293)
T cd04842 189 ----------------------EGGLG----------------------------------------------------- 193 (293)
T ss_pred ----------------------ccccc-----------------------------------------------------
Confidence 00000
Q ss_pred eChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCC
Q 045363 406 VVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGD 485 (712)
Q Consensus 406 i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 485 (712)
.......++.||++||+. ++++||||+|||.+|+++..... ....
T Consensus 194 -----------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~----~~~~ 238 (293)
T cd04842 194 -----------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG----GIGD 238 (293)
T ss_pred -----------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC----CCCC
Confidence 001234789999999998 89999999999999999875420 0001
Q ss_pred CCccceEeeecccchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHHcccc
Q 045363 486 RRIVPFNILSGTSMACPHAAAAAAYVKSFH-----P---DWSPAAIKSALMTTAT 532 (712)
Q Consensus 486 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----P---~lsp~~ik~~L~~TA~ 532 (712)
.....|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 239 ~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 239 TSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 223568999999999999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=347.19 Aligned_cols=239 Identities=30% Similarity=0.401 Sum_probs=189.6
Q ss_pred cEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHHH
Q 045363 100 IIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST 179 (712)
Q Consensus 100 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgi 179 (712)
|+|||||+|||++||+|++.. ++...+++ ... .....|..+||||||||
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-----------------------~~~~~~~~-~~~-------~~~~~~~~~HGT~vAgi 49 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-----------------------KLVPGWNF-VSN-------NDPTSDIDGHGTACAGV 49 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-----------------------CccCCccc-cCC-------CCCCCCCCCCHHHHHHH
Confidence 789999999999999997631 01111122 111 02456789999999999
Q ss_pred hccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCC-CCccchHHHH
Q 045363 180 AAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSR-SYFDDSISIG 257 (712)
Q Consensus 180 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~-~~~~~~~~~a 257 (712)
|+|+..+... +.||||+|+|+.+|++...+ +...++.++++++++.+++|||||||.... ......+..+
T Consensus 50 iag~~~~~~~--------~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~ 121 (242)
T cd07498 50 AAAVGNNGLG--------VAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNA 121 (242)
T ss_pred HHhccCCCce--------eEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHH
Confidence 9998644322 38999999999999998765 677889999999999999999999998742 2345666777
Q ss_pred HHHhhh-cCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccc
Q 045363 258 SFHAMK-KGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARA 336 (712)
Q Consensus 258 ~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~ 336 (712)
+..+.+ +|++||+||||+|......+...+++|+||+++..
T Consensus 122 ~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------------------- 163 (242)
T cd07498 122 ATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN-------------------------------------- 163 (242)
T ss_pred HHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC--------------------------------------
Confidence 778888 99999999999998876677888999999986532
Q ss_pred cccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHH
Q 045363 337 ANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQ 416 (712)
Q Consensus 337 ~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 416 (712)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeec
Q 045363 417 YINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSG 496 (712)
Q Consensus 417 ~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 496 (712)
+.++.||++|+.. |++|||.++........... +.....|..++|
T Consensus 164 -----------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~----~~~~~~~~~~~G 208 (242)
T cd07498 164 -----------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAG----DYPGGGYGSFSG 208 (242)
T ss_pred -----------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccccc----cCCCCceEeeCc
Confidence 2567899999987 99999999988754321110 122346899999
Q ss_pred ccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 045363 497 TSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTT 530 (712)
Q Consensus 497 TSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~T 530 (712)
||||||+|||++|||+|++|+|++++||++|++|
T Consensus 209 TS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 209 TSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=350.21 Aligned_cols=247 Identities=20% Similarity=0.199 Sum_probs=179.0
Q ss_pred cchhhhccCC-CCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCC
Q 045363 85 MSEKLQKRSS-KAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQ 163 (712)
Q Consensus 85 ~~~~~~~~~~-~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~ 163 (712)
+++..+|+.. ..|+||+|+|||+|||.+||||.++... . ..+
T Consensus 2 i~~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~----------------------------~-~~~-------- 44 (277)
T cd04843 2 INARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT----------------------------L-ISG-------- 44 (277)
T ss_pred CChHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc----------------------------c-cCC--------
Confidence 4556899874 4599999999999999999999764210 0 111
Q ss_pred CCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHh----CCCcEEE
Q 045363 164 KSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIG----DGVDLIS 239 (712)
Q Consensus 164 ~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~----~g~dVIN 239 (712)
....|..+|||||||||+|..+ + .| +.||||+|+|+.+|+++ .++++++|.+|++ .++.+||
T Consensus 45 ~~~~d~~gHGT~VAGiIaa~~n-~-------~G-~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in 110 (277)
T cd04843 45 LTDQADSDHGTAVLGIIVAKDN-G-------IG-VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLE 110 (277)
T ss_pred CCCCCCCCCcchhheeeeeecC-C-------Cc-eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEE
Confidence 1245788999999999998742 1 12 28999999999999985 3456677777776 3567899
Q ss_pred eccCCCCCC------CccchHHHHHHHhhhcCceEEEecCCCCCCCCccc-------------cCCCceEEEceeccCce
Q 045363 240 ISIGGPSRS------YFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVE-------------NVAPWIMTVAASSIDRK 300 (712)
Q Consensus 240 ~S~G~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~-------------~~~p~vitVga~~~~~~ 300 (712)
||||..... .....+..++.++.++|+++|+||||++....... ...|++|+|||++.+
T Consensus 111 ~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~-- 188 (277)
T cd04843 111 MQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST-- 188 (277)
T ss_pred ccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC--
Confidence 999986321 12334556777888999999999999986531110 112467777765321
Q ss_pred eEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhcc
Q 045363 301 FVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRL 380 (712)
Q Consensus 301 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~ 380 (712)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccC
Q 045363 381 QGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKP 460 (712)
Q Consensus 381 Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKP 460 (712)
....++.||++|+..
T Consensus 189 ---------------------------------------------------------~~~~~~~fSn~G~~v-------- 203 (277)
T cd04843 189 ---------------------------------------------------------TGHTRLAFSNYGSRV-------- 203 (277)
T ss_pred ---------------------------------------------------------CCCccccccCCCCcc--------
Confidence 001378999999987
Q ss_pred cEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHh----h-CCCCCHHHHHHHHHcccc
Q 045363 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKS----F-HPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 461 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~lsp~~ik~~L~~TA~ 532 (712)
||.|||.+|+++......... ......|..++|||||||||||++|||++ + +|+|+++|||++|+.|++
T Consensus 204 di~APG~~i~s~~~~~~~~~~---~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 204 DVYGWGENVTTTGYGDLQDLG---GENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred ceEcCCCCeEecCCCCccccc---CCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999999999999765221100 11112357899999999999999999975 3 499999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=353.58 Aligned_cols=261 Identities=29% Similarity=0.367 Sum_probs=182.9
Q ss_pred cCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCC
Q 045363 92 RSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDG 171 (712)
Q Consensus 92 ~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~g 171 (712)
..+++|+||+|||||+|||.+||+|.+... ...+| .++ ....|..+
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~-------------------------~~~~~-~~~--------~~~~d~~g 47 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI-------------------------TTKSF-VGG--------EDVQDGHG 47 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc-------------------------cCccc-CCC--------CCCCCCCC
Confidence 457899999999999999999999975421 11233 222 23567899
Q ss_pred ChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCC--
Q 045363 172 HGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSRS-- 248 (712)
Q Consensus 172 HGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~-- 248 (712)
|||||||||+|+..+ +...||||+|+|+.+|++...+ ....++++||+||++.|++|||||||.....
T Consensus 48 HGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~ 118 (297)
T cd07480 48 HGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLV 118 (297)
T ss_pred cHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccc
Confidence 999999999998644 2237999999999999997654 6777799999999999999999999985311
Q ss_pred --------CccchHHHHHHHh---------------hhcCceEEEecCCCCCCCCccc-----cCCCceEEEceeccCce
Q 045363 249 --------YFDDSISIGSFHA---------------MKKGILTACSAGNDGPYQGTVE-----NVAPWIMTVAASSIDRK 300 (712)
Q Consensus 249 --------~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~~p~vitVga~~~~~~ 300 (712)
.....+......+ .++|++||+||||++....... ...+++++|++....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~-- 196 (297)
T cd07480 119 DQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL-- 196 (297)
T ss_pred cccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC--
Confidence 1112222222223 6789999999999986542211 111233333322111
Q ss_pred eEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhcc
Q 045363 301 FVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRL 380 (712)
Q Consensus 301 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~ 380 (712)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccC
Q 045363 381 QGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKP 460 (712)
Q Consensus 381 Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKP 460 (712)
+....|+++.+ ....||
T Consensus 197 -----------------------------------------------------------~~~~~~~~~~~----~~~~~~ 213 (297)
T cd07480 197 -----------------------------------------------------------GRTGNFSAVAN----FSNGEV 213 (297)
T ss_pred -----------------------------------------------------------CCCCCccccCC----CCCCce
Confidence 11122233222 223578
Q ss_pred cEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccC---CCCC
Q 045363 461 DIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATP---MKTK 537 (712)
Q Consensus 461 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~---~~~~ 537 (712)
||+|||.+|+++... ..|..++|||||||+|||++|||+|++|++++.+++.+|+..... ....
T Consensus 214 dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~~~ 280 (297)
T cd07480 214 DIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQFA 280 (297)
T ss_pred EEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCCCC
Confidence 999999999988764 359999999999999999999999999999988888877733222 1111
Q ss_pred CCCCCCCCCCCCcCcc
Q 045363 538 SDDAELASGSGQINPT 553 (712)
Q Consensus 538 ~~~~~~~~G~G~in~~ 553 (712)
.......+|+|++++.
T Consensus 281 ~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 281 PGLDLPDRGVGLGLAP 296 (297)
T ss_pred CCCChhhcCCceeecC
Confidence 2236778999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=343.63 Aligned_cols=251 Identities=31% Similarity=0.454 Sum_probs=190.5
Q ss_pred CCcEEEEEcCCCCCCCCCCcCCCCCCC-CCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHH
Q 045363 98 SNIIVGLLDTGIWVESPSFNDKGFGPP-PAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHT 176 (712)
Q Consensus 98 ~gv~VgVIDtGid~~Hp~f~~~~~~~~-~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThV 176 (712)
+||+|||||||||++||+|.+..+... ...+.+....+.+|. . ....+.| . .....+.|..+|||||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~-~-------~~~~~~~d~~~HGT~v 69 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYV---D-DIYGWNF-V-------NNDNDPMDDNGHGTHV 69 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcc---c-CCCcccc-c-------CCCCCCCCCCCcHHHH
Confidence 689999999999999999987532110 001111111111110 0 0011111 1 1224567889999999
Q ss_pred HHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCccchHH
Q 045363 177 SSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSIS 255 (712)
Q Consensus 177 Agiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~~~~~~ 255 (712)
||||+|...++.. +.||||+|+|+.+|++...+ ++..+++++++++++.+++|||+|||... ....+.
T Consensus 70 a~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~---~~~~~~ 138 (259)
T cd07473 70 AGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGG---PSQALR 138 (259)
T ss_pred HHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC---CCHHHH
Confidence 9999998754332 38999999999999998876 78889999999999999999999999874 256677
Q ss_pred HHHHHhhhcCceEEEecCCCCCCC---Ccccc--CCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeee
Q 045363 256 IGSFHAMKKGILTACSAGNDGPYQ---GTVEN--VAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPL 330 (712)
Q Consensus 256 ~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l 330 (712)
.++.++.++|++||+||||++... ..++. ..+++|+||+.+..
T Consensus 139 ~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~-------------------------------- 186 (259)
T cd07473 139 DAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN-------------------------------- 186 (259)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC--------------------------------
Confidence 777888999999999999998763 22332 34788888875422
Q ss_pred EecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhh
Q 045363 331 TNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEV 410 (712)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~ 410 (712)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccc
Q 045363 411 GIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVP 490 (712)
Q Consensus 411 g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 490 (712)
+.++.||++|+. +||+.|||.++++.... ..
T Consensus 187 -----------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~-------------~~ 217 (259)
T cd07473 187 -----------------------------DALASFSNYGKK-------TVDLAAPGVDILSTSPG-------------GG 217 (259)
T ss_pred -----------------------------CCcCcccCCCCC-------CcEEEeccCCeEeccCC-------------Cc
Confidence 356678999985 46999999999996543 35
Q ss_pred eEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 491 FNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 491 y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 218 ~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 218 YGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred EEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=332.77 Aligned_cols=226 Identities=35% Similarity=0.488 Sum_probs=186.1
Q ss_pred CcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHH
Q 045363 99 NIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSS 178 (712)
Q Consensus 99 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAg 178 (712)
||+|||||+||+.+||+|.+.. ....+| .... .....|..+|||||||
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~-------------------------~~~~~~-~~~~------~~~~~~~~~HGT~vA~ 48 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNI-------------------------VGGANF-TGDD------NNDYQDGNGHGTHVAG 48 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccc-------------------------cCcccc-cCCC------CCCCCCCCCCHHHHHH
Confidence 7999999999999999997531 122223 2211 0345678899999999
Q ss_pred HhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCccchHHHH
Q 045363 179 TAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIG 257 (712)
Q Consensus 179 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~~~~~~~a 257 (712)
+|++..... .+.|+||+|+|+.+|+++..+ ....+++++++++++.+++|||||||... ....+..+
T Consensus 49 ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~~~~~~~~ 116 (229)
T cd07477 49 IIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS---DSPALREA 116 (229)
T ss_pred HHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---CCHHHHHH
Confidence 999986432 238999999999999998766 66789999999999999999999999863 33455666
Q ss_pred HHHhhhcCceEEEecCCCCCCCCcc--ccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEeccc
Q 045363 258 SFHAMKKGILTACSAGNDGPYQGTV--ENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGAR 335 (712)
Q Consensus 258 ~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~ 335 (712)
+..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 117 ~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------------------- 159 (229)
T cd07477 117 IKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------------------- 159 (229)
T ss_pred HHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC-------------------------------------
Confidence 6788899999999999999776554 7788999999986533
Q ss_pred ccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHH
Q 045363 336 AANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKID 415 (712)
Q Consensus 336 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 415 (712)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeee
Q 045363 416 QYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILS 495 (712)
Q Consensus 416 ~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 495 (712)
+.++.||++|+.. |+.|||.+|+++... ..|..++
T Consensus 160 ------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-------------~~~~~~~ 194 (229)
T cd07477 160 ------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN-------------NDYAYLS 194 (229)
T ss_pred ------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC-------------CCEEEEc
Confidence 2456789999876 999999999998764 3588999
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 045363 496 GTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTT 530 (712)
Q Consensus 496 GTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~T 530 (712)
|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 195 GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 195 GTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=353.46 Aligned_cols=272 Identities=34% Similarity=0.485 Sum_probs=210.3
Q ss_pred EEEEEcCCCCCCCCCCc-CCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHHH
Q 045363 101 IVGLLDTGIWVESPSFN-DKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST 179 (712)
Q Consensus 101 ~VgVIDtGid~~Hp~f~-~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgi 179 (712)
+|||||+|||++||+|. ..- ...++.+.+.| .++. .......|..+|||||||+
T Consensus 1 ~V~viDtGid~~h~~~~~~~~--------------------~~~~~~~~~~~-~~~~----~~~~~~~~~~~HGT~va~i 55 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF--------------------IWSKVPGGYNF-VDGN----PNPSPSDDDNGHGTHVAGI 55 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE--------------------EEEEEEEEEET-TTTB----STTTSSSTSSSHHHHHHHH
T ss_pred CEEEEcCCcCCCChhHccCCc--------------------ccccccceeec-cCCC----CCcCccccCCCccchhhhh
Confidence 69999999999999997 321 12234445666 3331 1124566788999999999
Q ss_pred hccCC-CCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHH-hCCCcEEEeccCCCC---CCCccchH
Q 045363 180 AAGET-VKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAI-GDGVDLISISIGGPS---RSYFDDSI 254 (712)
Q Consensus 180 iag~~-~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~-~~g~dVIN~S~G~~~---~~~~~~~~ 254 (712)
|+|.. .++. ...|+||+|+|+.+|+++..+....+++++|++++ +.+++|||||||... .+...+.+
T Consensus 56 i~~~~~~~~~--------~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~ 127 (282)
T PF00082_consen 56 IAGNGGNNGP--------GINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDIL 127 (282)
T ss_dssp HHHTTSSSSS--------SETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHH
T ss_pred cccccccccc--------ccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccccccccc
Confidence 99997 2221 12899999999999998877677888999999999 899999999999831 12233445
Q ss_pred HHHHHHhhhcCceEEEecCCCCCCCCc---cccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeE
Q 045363 255 SIGSFHAMKKGILTACSAGNDGPYQGT---VENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLT 331 (712)
Q Consensus 255 ~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~ 331 (712)
..+...+.++|+++|+||||++..... .+...+++|+||+++..
T Consensus 128 ~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~--------------------------------- 174 (282)
T PF00082_consen 128 EEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN--------------------------------- 174 (282)
T ss_dssp HHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT---------------------------------
T ss_pred ccccccccccCcceeeccccccccccccccccccccccccccccccc---------------------------------
Confidence 566668889999999999999876643 55566888999876422
Q ss_pred ecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhH
Q 045363 332 NGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVG 411 (712)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g 411 (712)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccce
Q 045363 412 IKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPF 491 (712)
Q Consensus 412 ~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 491 (712)
+.++.||++|+.. .++++||||+|||.+|++.++.. ....|
T Consensus 175 ----------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~----------~~~~~ 215 (282)
T PF00082_consen 175 ----------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGS----------DRGSY 215 (282)
T ss_dssp ----------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTT----------ESEEE
T ss_pred ----------------------------ccccccccccccc-ccccccccccccccccccccccc----------ccccc
Confidence 2567899997543 27899999999999998888641 11458
Q ss_pred EeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCC-CCCCCCCCCCCCcCccccCC
Q 045363 492 NILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTK-SDDAELASGSGQINPTKAVH 557 (712)
Q Consensus 492 ~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~-~~~~~~~~G~G~in~~~A~~ 557 (712)
..++|||||||+|||++|||+|++|+|++++||.+|++||.+.... ....+..||||+||+++|++
T Consensus 216 ~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 216 TSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp EEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred cccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 8999999999999999999999999999999999999999999832 23356788999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=344.51 Aligned_cols=309 Identities=25% Similarity=0.361 Sum_probs=243.8
Q ss_pred chHHHHHHHHHHhCCcccc--cc----------------ceEEEec---ceeeeEEEEcCHHHHHHhhcCCCeEEEEeCe
Q 045363 12 AVKEHHSLLTTAIGDEKLA--RE----------------SKIRSYG---KSFNGFVARLLPHEAKRLSEEESVVSVFENT 70 (712)
Q Consensus 12 ~~~~h~~~~~~~~~~~~~~--~~----------------~v~~~y~---~~~ng~s~~l~~~~i~~l~~~p~V~~V~~~~ 70 (712)
-+..|.+|+++++...... .. .+.+.|. .+|+|+.-..+.+-+..+++.|-+..++++.
T Consensus 95 ~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~ 174 (501)
T KOG1153|consen 95 KISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESVCSIRSDPLIKAVEKDS 174 (501)
T ss_pred HHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccceeeeeccCcceeeccccc
Confidence 6778999999998632110 00 1333333 3888999999999999999999999999886
Q ss_pred eeec--------ccCCCccccccchh-----hhcc----CCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccc
Q 045363 71 RRKL--------HTTRTWDFLGMSEK-----LQKR----SSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCV 133 (712)
Q Consensus 71 ~~~~--------~~~~s~~~~~~~~~-----~~~~----~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~ 133 (712)
..+. |..-+|.+..+... .-|- .-..|+||...|+||||+.+||||.++. .|- .|.
T Consensus 175 ~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFegRa------~wG-a~i 247 (501)
T KOG1153|consen 175 VVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFEGRA------IWG-ATI 247 (501)
T ss_pred ccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccccccce------ecc-ccc
Confidence 6543 44556766655321 1221 2447999999999999999999998652 221 110
Q ss_pred cCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEee
Q 045363 134 TGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVC 213 (712)
Q Consensus 134 ~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~ 213 (712)
- .. ....|++||||||||+|+++. .|||.+++|+++||+
T Consensus 248 -----------------~-~~---------~~~~D~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl 286 (501)
T KOG1153|consen 248 -----------------P-PK---------DGDEDCNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVL 286 (501)
T ss_pred -----------------C-CC---------CcccccCCCcceeeeeeeccc--------------cccccccceEEEEEe
Confidence 0 11 245689999999999999986 799999999999999
Q ss_pred cCCC-CChHHHHHHHHHHHhC---------CCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCC-Ccc
Q 045363 214 WSGG-CADMDILAAFDDAIGD---------GVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ-GTV 282 (712)
Q Consensus 214 ~~~g-~~~~~i~~ai~~a~~~---------g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~ 282 (712)
+++| +..+++++++|++++. +..|.|||+|+.. .-++..|+..|.+.|+++++||||+..+. .+.
T Consensus 287 ~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~----S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~S 362 (501)
T KOG1153|consen 287 RSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR----SAALNMAVNAASERGIHFAVAAGNEHEDACNSS 362 (501)
T ss_pred ccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc----cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccC
Confidence 9988 8999999999999986 5789999999864 45667777899999999999999998664 566
Q ss_pred ccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccc
Q 045363 283 ENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKG 362 (712)
Q Consensus 283 ~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g 362 (712)
|+.+..+|||||+|..
T Consensus 363 Pass~~aITVGAst~~---------------------------------------------------------------- 378 (501)
T KOG1153|consen 363 PASSKKAITVGASTKN---------------------------------------------------------------- 378 (501)
T ss_pred cccccccEEecccccc----------------------------------------------------------------
Confidence 6788999999998643
Q ss_pred eEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCcc
Q 045363 363 KIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFI 442 (712)
Q Consensus 363 kivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 442 (712)
+.+
T Consensus 379 -----------------------------------------------------------------------------D~i 381 (501)
T KOG1153|consen 379 -----------------------------------------------------------------------------DTI 381 (501)
T ss_pred -----------------------------------------------------------------------------cch
Confidence 378
Q ss_pred ccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCC-----
Q 045363 443 ASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPD----- 517 (712)
Q Consensus 443 a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~----- 517 (712)
|.||+||++. ||-|||.+|+|+|.+.. ..-...||||||+|||||++|.+++++|.
T Consensus 382 A~FSN~G~CV--------diFAPGv~IlSs~iGs~-----------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f 442 (501)
T KOG1153|consen 382 AFFSNWGKCV--------DIFAPGVNILSSWIGSN-----------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSF 442 (501)
T ss_pred hhhcCcccee--------eeecCchhhhhhhhcCc-----------cchheeecccccCcchhhhHHHhhhcCCCChHHh
Confidence 9999999999 99999999999998631 34689999999999999999999999883
Q ss_pred ----CCHHHHHHHHHcccc
Q 045363 518 ----WSPAAIKSALMTTAT 532 (712)
Q Consensus 518 ----lsp~~ik~~L~~TA~ 532 (712)
.||.++|..|..-..
T Consensus 443 ~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 443 ANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhccCChHHhhhhhhcccc
Confidence 378888887776443
|
|
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=337.27 Aligned_cols=157 Identities=25% Similarity=0.314 Sum_probs=118.8
Q ss_pred CCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHH
Q 045363 97 QSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHT 176 (712)
Q Consensus 97 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThV 176 (712)
+++|+|||||||||++||+|.+. +...++| ...............|..+|||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~-------------------------i~~~~~~-~~~~~~~~~~~~~~~d~~gHGT~v 55 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK-------------------------IIGGKSF-SPYEGDGNKVSPYYVSADGHGTAM 55 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc-------------------------cccCCCC-CCCCCCcccCCCCCCCCCCcHHHH
Confidence 78999999999999999999753 1112222 111100001112235688999999
Q ss_pred HHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-------CChHHHHHHHHHHHhCCCcEEEeccCCCCCC-
Q 045363 177 SSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-------CADMDILAAFDDAIGDGVDLISISIGGPSRS- 248 (712)
Q Consensus 177 Agiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~- 248 (712)
||||+ |+||+|+|+.+|+++..+ ++...+++||+||+++|+||||||||.....
T Consensus 56 AgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~ 117 (247)
T cd07491 56 ARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPED 117 (247)
T ss_pred HHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccc
Confidence 99995 679999999999998643 4567899999999999999999999987421
Q ss_pred --CccchHHHHHHHhhhcCceEEEecCCCCCCCC-c--cccCCCceEEEceecc
Q 045363 249 --YFDDSISIGSFHAMKKGILTACSAGNDGPYQG-T--VENVAPWIMTVAASSI 297 (712)
Q Consensus 249 --~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~~p~vitVga~~~ 297 (712)
.....+..++.+|.++|++||+||||+|.... . .+...|++|+|||++.
T Consensus 118 ~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 118 NDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred cccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 13567778888999999999999999997654 2 3456789999998754
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=342.44 Aligned_cols=253 Identities=28% Similarity=0.315 Sum_probs=174.6
Q ss_pred CcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHH
Q 045363 99 NIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSS 178 (712)
Q Consensus 99 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAg 178 (712)
.|+|||||||||++||+|++..... .+ .+.....+ .........+.....|..+|||||||
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~----~~--------------~~~~~~~~-~~~~~~~~~~~~~~~d~~gHGT~vAg 61 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY----SK--------------NLVPKGGY-DGKEAGETGDINDIVDKLGHGTAVAG 61 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc----cc--------------ccccCCCc-CCccccccCCCCcCCCCCCcHhHHHH
Confidence 4899999999999999998531100 00 00000000 00000001122345677999999999
Q ss_pred HhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCC-ChHHHHHHHHHHHhCCCcEEEeccCCCCCCC--------
Q 045363 179 TAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGC-ADMDILAAFDDAIGDGVDLISISIGGPSRSY-------- 249 (712)
Q Consensus 179 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~-~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~-------- 249 (712)
+|+|+... .||||+|+|+.+|+++..+. ...+++++|++|++++++|||||||......
T Consensus 62 iia~~~~~------------~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~ 129 (294)
T cd07482 62 QIAANGNI------------KGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDV 129 (294)
T ss_pred HHhcCCCC------------ceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchh
Confidence 99987432 59999999999999987764 8889999999999999999999999763211
Q ss_pred ccchHHHHHHHhhhcCceEEEecCCCCCCCCc----------------------cccCCCceEEEceeccCceeEEEEEe
Q 045363 250 FDDSISIGSFHAMKKGILTACSAGNDGPYQGT----------------------VENVAPWIMTVAASSIDRKFVTAVKL 307 (712)
Q Consensus 250 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~----------------------~~~~~p~vitVga~~~~~~~~~~~~~ 307 (712)
....+..++..+.++|++||+||||+|..... .+...+++|+|||++
T Consensus 130 ~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~----------- 198 (294)
T cd07482 130 EYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATD----------- 198 (294)
T ss_pred hhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeC-----------
Confidence 12345566667888999999999999865311 112223344444332
Q ss_pred CCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEE
Q 045363 308 GNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIV 387 (712)
Q Consensus 308 ~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~ 387 (712)
T Consensus 199 -------------------------------------------------------------------------------- 198 (294)
T cd07482 199 -------------------------------------------------------------------------------- 198 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCC
Q 045363 388 AVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGL 467 (712)
Q Consensus 388 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 467 (712)
..+.++.||++|+.. +|++|||.
T Consensus 199 --------------------------------------------------~~~~~~~~S~~g~~~-------~~~~apG~ 221 (294)
T cd07482 199 --------------------------------------------------NNGNLSSFSNYGNSR-------IDLAAPGG 221 (294)
T ss_pred --------------------------------------------------CCCCcCccccCCCCc-------ceEECCCC
Confidence 234677899998753 49999999
Q ss_pred cEEeeecCCc--c-CCC------CCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCH-HHHHHHHHcc
Q 045363 468 DILAAYSELA--S-VTG------LPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSP-AAIKSALMTT 530 (712)
Q Consensus 468 ~I~sa~~~~~--~-~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp-~~ik~~L~~T 530 (712)
++........ . ... .........|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 222 DFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred CcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 8853221100 0 000 000122356899999999999999999999999999999 9999999986
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=344.66 Aligned_cols=250 Identities=20% Similarity=0.201 Sum_probs=181.4
Q ss_pred cchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCC
Q 045363 85 MSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQK 164 (712)
Q Consensus 85 ~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~ 164 (712)
++...+|+.+++|+||+|+|||||||+.||+|.+.... ...++| ..+. . ..
T Consensus 26 ~~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-----------------------~~~~~~-~~~~----~-~~ 76 (297)
T cd04059 26 LNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-----------------------EASYDF-NDND----P-DP 76 (297)
T ss_pred cccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-----------------------cccccc-cCCC----C-CC
Confidence 34568999999999999999999999999999754211 011122 1111 0 01
Q ss_pred CC--CCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhCCCcEEEecc
Q 045363 165 SP--VDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISI 242 (712)
Q Consensus 165 ~~--~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S~ 242 (712)
.+ .|..+|||||||||+|+..+..+ ..||||+|+|+.+|+++.. .....+..++.++.+ .++||||||
T Consensus 77 ~~~~~~~~gHGT~vAgiiag~~~~~~~--------~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~ 146 (297)
T cd04059 77 TPRYDDDNSHGTRCAGEIAAVGNNGIC--------GVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSW 146 (297)
T ss_pred CCccccccccCcceeeEEEeecCCCcc--------cccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCC
Confidence 22 27889999999999998644221 2899999999999998765 334455566666554 469999999
Q ss_pred CCCCCCC----ccchHHHHHHHhhh-----cCceEEEecCCCCCCCCc----cccCCCceEEEceeccCceeEEEEEeCC
Q 045363 243 GGPSRSY----FDDSISIGSFHAMK-----KGILTACSAGNDGPYQGT----VENVAPWIMTVAASSIDRKFVTAVKLGN 309 (712)
Q Consensus 243 G~~~~~~----~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~ 309 (712)
|...... .......++.++.+ +|++||+||||+|..... .....|++|+|||++.+
T Consensus 147 g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~----------- 215 (297)
T cd04059 147 GPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN----------- 215 (297)
T ss_pred CCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC-----------
Confidence 9763221 12223333334332 699999999999973322 12345788998886432
Q ss_pred CceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEe
Q 045363 310 GMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAV 389 (712)
Q Consensus 310 g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~ 389 (712)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCc-
Q 045363 390 DAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLD- 468 (712)
Q Consensus 390 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~- 468 (712)
+.++.||++|+.. +++|||..
T Consensus 216 --------------------------------------------------g~~~~~s~~g~~~--------~~~a~g~~~ 237 (297)
T cd04059 216 --------------------------------------------------GVRASYSEVGSSV--------LASAPSGGS 237 (297)
T ss_pred --------------------------------------------------CCCcCCCCCCCcE--------EEEecCCCC
Confidence 3567899999988 89999987
Q ss_pred ------EEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 469 ------ILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 469 ------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
|+++... .....|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 238 ~~~~~~i~~~~~~----------~~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 238 GNPEASIVTTDLG----------GNCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCCCCceEeCCCC----------CCCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 5555432 11245789999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=322.40 Aligned_cols=221 Identities=23% Similarity=0.290 Sum_probs=172.5
Q ss_pred CcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHH
Q 045363 99 NIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSS 178 (712)
Q Consensus 99 gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAg 178 (712)
||+|||||||||++||+|.+.... +..| .. ..+ ..+.....|..+|||||||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~------------~~~~-------~~-~~~--------~~~~~~~~d~~gHGT~vAg 52 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD------------GEVT-------ID-LEI--------IVVSAEGGDKDGHGTACAG 52 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc------------cccc-------cc-ccc--------ccCCCCCCCCCCcHHHHHH
Confidence 799999999999999999764211 0000 00 000 0112345678899999999
Q ss_pred HhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCccchHHHH
Q 045363 179 TAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIG 257 (712)
Q Consensus 179 iiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~~~~~~~a 257 (712)
||++. +|+++|+.+|+++..+ +...++++||+|+++++++|||||||..... ....+..+
T Consensus 53 iia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~~~~~~~~ 113 (222)
T cd07492 53 IIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-DFPLLKEL 113 (222)
T ss_pred HHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-cCHHHHHH
Confidence 99754 5999999999998776 7888899999999999999999999987532 23456667
Q ss_pred HHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEeccccc
Q 045363 258 SFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAA 337 (712)
Q Consensus 258 ~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~ 337 (712)
+.++.++|+++|+||||++.... .+...+++|+|++.+..+
T Consensus 114 ~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~-------------------------------------- 154 (222)
T cd07492 114 LEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD-------------------------------------- 154 (222)
T ss_pred HHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC--------------------------------------
Confidence 77888889999999999986543 367778999998754220
Q ss_pred ccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHH
Q 045363 338 NVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQY 417 (712)
Q Consensus 338 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 417 (712)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecc
Q 045363 418 INSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGT 497 (712)
Q Consensus 418 ~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 497 (712)
.. +.+++ ++++.|||.+|+++.+. ..|..++||
T Consensus 155 -----------------------~~---~~~~~--------~~~~~apg~~i~~~~~~-------------~~~~~~~GT 187 (222)
T cd07492 155 -----------------------PK---SFWYI--------YVEFSADGVDIIAPAPH-------------GRYLTVSGN 187 (222)
T ss_pred -----------------------Cc---ccccC--------CceEEeCCCCeEeecCC-------------CCEEEeccH
Confidence 01 11233 34999999999998764 358999999
Q ss_pred cchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 498 SMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 498 SmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
|||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 188 S~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 188 SFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=326.49 Aligned_cols=242 Identities=29% Similarity=0.381 Sum_probs=185.2
Q ss_pred CCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhH
Q 045363 96 AQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTH 175 (712)
Q Consensus 96 ~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGTh 175 (712)
+|+||+|+|||+||+.+||+|.+...... .+ .... ........|..+||||
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~-------------------------~~-~~~~---~~~~~~~~~~~~HGT~ 51 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS-------------------------YY-VAVN---DAGYASNGDGDSHGTH 51 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc-------------------------cc-cccc---cccCCCCCCCCChHHH
Confidence 69999999999999999999986422100 00 0000 0001244568899999
Q ss_pred HHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHhCCCcEEEeccCCCCCC-----
Q 045363 176 TSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG--CADMDILAAFDDAIGDGVDLISISIGGPSRS----- 248 (712)
Q Consensus 176 VAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~----- 248 (712)
|||+|+|+..+ ..+.|+||+|+|+.+|+++..+ .....+.++++++++.+++|||||||.....
T Consensus 52 vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~ 122 (267)
T cd04848 52 VAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVST 122 (267)
T ss_pred HHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCccccccc
Confidence 99999998644 2238999999999999998764 6667889999999999999999999987422
Q ss_pred -------CccchHHHHHHHhhhcCceEEEecCCCCCCCCcc---------ccCCCceEEEceeccCceeEEEEEeCCCce
Q 045363 249 -------YFDDSISIGSFHAMKKGILTACSAGNDGPYQGTV---------ENVAPWIMTVAASSIDRKFVTAVKLGNGMR 312 (712)
Q Consensus 249 -------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 312 (712)
.....+...+..+.++|+++|+||||++...... +...+++|+||+++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~------------- 189 (267)
T cd04848 123 TYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG------------- 189 (267)
T ss_pred chhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-------------
Confidence 1445566677788899999999999998654333 23457888888865431
Q ss_pred EeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCC
Q 045363 313 TSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAP 392 (712)
Q Consensus 313 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~ 392 (712)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCcccc--ccCCCCCcCCCCcccCcEEeCCCcEE
Q 045363 393 TDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIAS--FSSRGPQKITLNILKPDIAAPGLDIL 470 (712)
Q Consensus 393 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~--fSs~Gp~~~~~~~lKPDI~APG~~I~ 470 (712)
.... ||++|+.. -.++++|||.+|.
T Consensus 190 ------------------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~ 216 (267)
T cd04848 190 ------------------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIY 216 (267)
T ss_pred ------------------------------------------------Ccccccccccchhh-----hhheeecCcCcee
Confidence 2222 47777644 2347999999999
Q ss_pred eeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 471 AAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 471 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
++.+. ....|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 217 ~~~~~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 217 STDPD-----------GGNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred ecccC-----------CCCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 98762 1145889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=319.70 Aligned_cols=338 Identities=25% Similarity=0.360 Sum_probs=253.7
Q ss_pred HHHHHHHHHHhCCccc------cccceEEEecceeeeEEEEcC-----HHHHHHhhcCCCeEEEEeCeeeeccc------
Q 045363 14 KEHHSLLTTAIGDEKL------ARESKIRSYGKSFNGFVARLL-----PHEAKRLSEEESVVSVFENTRRKLHT------ 76 (712)
Q Consensus 14 ~~h~~~~~~~~~~~~~------~~~~v~~~y~~~~ng~s~~l~-----~~~i~~l~~~p~V~~V~~~~~~~~~~------ 76 (712)
..|+..+++.+....- .+...--+|-.-|.-+-++-. .-+++.|.-.|.|+.|.|.+....-.
T Consensus 63 k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~v~pqr~V~r~l~y~~~~ 142 (1033)
T KOG4266|consen 63 KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKVVFPQRRVLRGLSYPDGK 142 (1033)
T ss_pred hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCceeecchhhhhhcccccccC
Confidence 4677777777753220 012223355556655555443 23578899999999999876643210
Q ss_pred ---------------C--------------CCccccc--------cchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCC
Q 045363 77 ---------------T--------------RTWDFLG--------MSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDK 119 (712)
Q Consensus 77 ---------------~--------------~s~~~~~--------~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~ 119 (712)
+ .++.+.. +.++.+|+.|++|++|+|||.|||+...||-|+.-
T Consensus 143 ~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnv 222 (1033)
T KOG4266|consen 143 KRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVKVAIFDTGLRADHPHFRNV 222 (1033)
T ss_pred CCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceEEEEeecccccCCccccch
Confidence 0 0011110 13468999999999999999999999999999742
Q ss_pred CCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceee
Q 045363 120 GFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTAR 199 (712)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~ 199 (712)
..-.++ .+. ..-.|.-||||.|||+|||... ..
T Consensus 223 --------------------------KERTNW-TNE--------~tLdD~lgHGTFVAGvia~~~e------------c~ 255 (1033)
T KOG4266|consen 223 --------------------------KERTNW-TNE--------DTLDDNLGHGTFVAGVIAGRNE------------CL 255 (1033)
T ss_pred --------------------------hhhcCC-cCc--------cccccCcccceeEeeeeccchh------------hc
Confidence 111122 221 3455788999999999998742 27
Q ss_pred eecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCC
Q 045363 200 GGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPY 278 (712)
Q Consensus 200 GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~ 278 (712)
|.||+++|+++|||.+.. ...+..++|+.||+....||+|+|+|++ ++.+.++-.-+.+...+++++|.|+||+||-
T Consensus 256 gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP--DfmD~PFVeKVwEltAnNvIMvSAiGNDGPL 333 (1033)
T KOG4266|consen 256 GFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP--DFMDLPFVEKVWELTANNVIMVSAIGNDGPL 333 (1033)
T ss_pred ccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc--ccccchHHHHHHhhccCcEEEEEecCCCCcc
Confidence 999999999999998866 7889999999999999999999999998 4666676666667788999999999999998
Q ss_pred CCccccCCC--ceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCC
Q 045363 279 QGTVENVAP--WIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLS 356 (712)
Q Consensus 279 ~~~~~~~~p--~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~ 356 (712)
.++..+.+. .||.||..
T Consensus 334 YGTLNNPaDQsDViGVGGI------------------------------------------------------------- 352 (1033)
T KOG4266|consen 334 YGTLNNPADQSDVIGVGGI------------------------------------------------------------- 352 (1033)
T ss_pred eeecCCcccccceeeeccc-------------------------------------------------------------
Confidence 877766542 34444321
Q ss_pred CCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeC
Q 045363 357 MKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNT 436 (712)
Q Consensus 357 ~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~ 436 (712)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccCCCCCcC----CCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHH
Q 045363 437 STAPFIASFSSRGPQKI----TLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVK 512 (712)
Q Consensus 437 ~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 512 (712)
.-.+.+|.|||||-+.. ..||+||||++-|.+|....-. .+-..+||||.|+|.|||+++||.
T Consensus 353 dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~LLv 419 (1033)
T KOG4266|consen 353 DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCLLV 419 (1033)
T ss_pred cccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhccCCcccchhhhceeeeEe
Confidence 22358999999997654 4799999999999998766432 346789999999999999999997
Q ss_pred h----hCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccCC
Q 045363 513 S----FHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAVH 557 (712)
Q Consensus 513 ~----~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~~ 557 (712)
+ +.--+.|+.+|++|+..|.+++.. .-+.||+|++|+.++++
T Consensus 420 S~~~qk~dl~NPASmKQaLiegA~kLpg~---NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 420 SVEAQKKDLLNPASMKQALIEGAAKLPGP---NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred eeheehhhccCHHHHHHHHHhHHhhCCCC---chhhccCcchhHHHHHH
Confidence 7 223478999999999999999885 45789999999998876
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=282.10 Aligned_cols=193 Identities=19% Similarity=0.191 Sum_probs=140.9
Q ss_pred CCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHH--HhCCCcEEEeccC
Q 045363 166 PVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDA--IGDGVDLISISIG 243 (712)
Q Consensus 166 ~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a--~~~g~dVIN~S~G 243 (712)
..|.++|||||||||||. .|++|+++|+..++... ....+..+++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~---~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK---SNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC---CCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 457899999999999987 45679999987655321 233466777888 5679999999999
Q ss_pred CCCCCC------ccchHHHHHHHhhhc-CceEEEecCCCCCCC-----CccccCCCceEEEceeccCceeEEEEEeCCCc
Q 045363 244 GPSRSY------FDDSISIGSFHAMKK-GILTACSAGNDGPYQ-----GTVENVAPWIMTVAASSIDRKFVTAVKLGNGM 311 (712)
Q Consensus 244 ~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~ 311 (712)
...... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||++.....
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~---------- 164 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR---------- 164 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc----------
Confidence 874221 223455555565555 999999999999743 2234567889999987643110
Q ss_pred eEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecC
Q 045363 312 RTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDA 391 (712)
Q Consensus 312 ~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~ 391 (712)
T Consensus 165 -------------------------------------------------------------------------------- 164 (247)
T cd07488 165 -------------------------------------------------------------------------------- 164 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCC--CCCcCCCCcccCcEEeCCCcE
Q 045363 392 PTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSR--GPQKITLNILKPDIAAPGLDI 469 (712)
Q Consensus 392 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~--Gp~~~~~~~lKPDI~APG~~I 469 (712)
...+.||++ +|+. ++..||||+|||++|
T Consensus 165 ------------------------------------------------~~~s~~sn~~~~~~~--~~~~~~di~APG~~i 194 (247)
T cd07488 165 ------------------------------------------------FFASDVSNAGSEINS--YGRRKVLIVAPGSNY 194 (247)
T ss_pred ------------------------------------------------ceecccccccCCCCC--CCCceeEEEEeeeeE
Confidence 023445554 4444 788999999999999
Q ss_pred EeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCC------HHHHHHHHHccc
Q 045363 470 LAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWS------PAAIKSALMTTA 531 (712)
Q Consensus 470 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ls------p~~ik~~L~~TA 531 (712)
++ +. ..|..++|||||||||||++|||++++|++. -.++|.+|++|+
T Consensus 195 ~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 195 NL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred EC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 98 21 2478999999999999999999999988766 445677777653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=299.99 Aligned_cols=238 Identities=27% Similarity=0.343 Sum_probs=183.0
Q ss_pred CCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCC-C--CChHHHHHHHHHHHhCCCcEEEeccCCC
Q 045363 169 TDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSG-G--CADMDILAAFDDAIGDGVDLISISIGGP 245 (712)
Q Consensus 169 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~a~~~g~dVIN~S~G~~ 245 (712)
...|||||||||+|+..+.. ...||||+|+|+++++.+.. | .+...+.+|+..+++..+||||||||-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 35699999999999986532 23799999999999998753 2 4566789999999999999999999987
Q ss_pred C-CCCccchHHHHHHHhhhcCceEEEecCCCCCCCCcccc---CCCceEEEceeccCceeEEEEEeCCCceEeeeeeecC
Q 045363 246 S-RSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVEN---VAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTF 321 (712)
Q Consensus 246 ~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 321 (712)
. -+.....++..-+.+.++|+++|+||||+||...+++. ....+|.|||.-.....
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm-------------------- 440 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM-------------------- 440 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH--------------------
Confidence 3 33345555555555668899999999999999877664 34578888874221000
Q ss_pred CCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceee
Q 045363 322 SPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLI 401 (712)
Q Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 401 (712)
...|.+.
T Consensus 441 ---~a~y~~~---------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 441 ---QAEYSVR---------------------------------------------------------------------- 447 (1304)
T ss_pred ---Hhhhhhh----------------------------------------------------------------------
Confidence 0000000
Q ss_pred eEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCC
Q 045363 402 AGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTG 481 (712)
Q Consensus 402 p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 481 (712)
. .-......+|||||+. ||-+--.|+|||+.|.+--.
T Consensus 448 --------------e--------------------~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~------- 484 (1304)
T KOG1114|consen 448 --------------E--------------------PVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQ------- 484 (1304)
T ss_pred --------------c--------------------cCCCCccccccCCCCc--CCCcceEEecCCccccCCch-------
Confidence 0 1123467889999999 99999999999999865421
Q ss_pred CCCCCCccceEeeecccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccCC
Q 045363 482 LPGDRRIVPFNILSGTSMACPHAAAAAAYVKS----FHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAVH 557 (712)
Q Consensus 482 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~~ 557 (712)
..-..-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||.+++.. ..+.+|.|+|++++|.+
T Consensus 485 ----~tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i---d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 485 ----YTLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI---DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred ----hhhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc---chhccCcceeehhHHHH
Confidence 1113457899999999999999999976 467899999999999999999886 78999999999999987
|
|
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-31 Score=267.56 Aligned_cols=234 Identities=36% Similarity=0.495 Sum_probs=176.4
Q ss_pred cEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHHHHH
Q 045363 100 IIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSST 179 (712)
Q Consensus 100 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgi 179 (712)
|+|+|||+|++++||+|.... .... ...++ ... ........+..+||||||++
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~---------~~~~-------------~~~~~-~~~----~~~~~~~~~~~~HGt~va~~ 53 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLF---------GGGD-------------GGNDD-DDN----ENGPTDPDDGNGHGTHVAGI 53 (241)
T ss_pred CEEEEEeCCCCCCCcchhccc---------cCcc-------------ccccc-ccC----cCCCCCCCCCCCcHHHHHHH
Confidence 689999999999999872110 0000 00011 000 00112455788999999999
Q ss_pred hccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHH-hCCCcEEEeccCCCCCCCccchHHHH
Q 045363 180 AAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAI-GDGVDLISISIGGPSRSYFDDSISIG 257 (712)
Q Consensus 180 iag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~dVIN~S~G~~~~~~~~~~~~~a 257 (712)
|++...+... .|+||+++|+.+|+....+ .....+++++++++ ..+++|||||||..... ....+...
T Consensus 54 i~~~~~~~~~---------~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-~~~~~~~~ 123 (241)
T cd00306 54 IAASANNGGG---------VGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-PSSALSEA 123 (241)
T ss_pred HhcCCCCCCC---------EEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-CCHHHHHH
Confidence 9998644221 7999999999999998766 67788999999999 89999999999987533 34455666
Q ss_pred HHHhhhc-CceEEEecCCCCCCCC---ccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEec
Q 045363 258 SFHAMKK-GILTACSAGNDGPYQG---TVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNG 333 (712)
Q Consensus 258 ~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~ 333 (712)
+..+.++ |+++|+||||.+.... ..+...+++|+||+++...
T Consensus 124 ~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------------------------- 169 (241)
T cd00306 124 IDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------------------------- 169 (241)
T ss_pred HHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------------------------
Confidence 6677777 9999999999998776 4677889999999875431
Q ss_pred ccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHH
Q 045363 334 ARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIK 413 (712)
Q Consensus 334 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~ 413 (712)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCceEEEEEeeeeeCCCCCccc-cccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceE
Q 045363 414 IDQYINSTKNPQAVIYKTRVVNTSTAPFIA-SFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFN 492 (712)
Q Consensus 414 l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a-~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 492 (712)
... .++++|+ |||+.|||.++.... ......+.
T Consensus 170 ---------------------------~~~~~~~~~~~--------~~~~~apg~~~~~~~-----------~~~~~~~~ 203 (241)
T cd00306 170 ---------------------------TPASPSSNGGA--------GVDIAAPGGDILSSP-----------TTGGGGYA 203 (241)
T ss_pred ---------------------------CccCCcCCCCC--------CceEEeCcCCccCcc-----------cCCCCCeE
Confidence 111 3344443 569999999987751 12224689
Q ss_pred eeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 045363 493 ILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTT 530 (712)
Q Consensus 493 ~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~T 530 (712)
.++|||||||+|||++|||+|++|++++.++|++|++|
T Consensus 204 ~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 204 TLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred eeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=238.54 Aligned_cols=268 Identities=29% Similarity=0.443 Sum_probs=197.0
Q ss_pred hhhccC--CCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCC-
Q 045363 88 KLQKRS--SKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQK- 164 (712)
Q Consensus 88 ~~~~~~--~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~- 164 (712)
...|.. +.+|+|++|+|||+||+..||+|.+.... .++| .++. ..
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~-------------------------~~~~-~~~~------~~~ 177 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA-------------------------GGDF-VDGD------PEP 177 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc-------------------------cccc-ccCC------CCC
Confidence 468887 99999999999999999999999764210 0122 2221 01
Q ss_pred CCCCCCCChhHHHHHhccCC-CCCCcccccccceeeeecCCCeEEEEEeecCC-C-CChHHHHHHHHHHHhCC--CcEEE
Q 045363 165 SPVDTDGHGTHTSSTAAGET-VKGASLYGIAQGTARGGVPSARIAMYKVCWSG-G-CADMDILAAFDDAIGDG--VDLIS 239 (712)
Q Consensus 165 ~~~d~~gHGThVAgiiag~~-~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~a~~~g--~dVIN 239 (712)
...|..+|||||++++++.. .+. ....|+||+++++.++++... + ....+++++|+++++.+ +++||
T Consensus 178 ~~~d~~~hGt~vag~ia~~~~~~~--------~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in 249 (508)
T COG1404 178 PFLDDNGHGTHVAGTIAAVIFDNG--------AGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVIN 249 (508)
T ss_pred CCCCCCCCcceeeeeeeeecccCC--------CccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEE
Confidence 25688999999999999842 111 113899999999999999865 5 66777899999999999 99999
Q ss_pred eccCCCCCCCccchHHHHHHHhhhcC-ceEEEecCCCCCCCCc----cccCC--CceEEEceeccCceeEEEEEeCCCce
Q 045363 240 ISIGGPSRSYFDDSISIGSFHAMKKG-ILTACSAGNDGPYQGT----VENVA--PWIMTVAASSIDRKFVTAVKLGNGMR 312 (712)
Q Consensus 240 ~S~G~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~~----~~~~~--p~vitVga~~~~~~~~~~~~~~~g~~ 312 (712)
||+|..........+..++..++..| +++|+|+||.+..... .+... +.+++|++.+.
T Consensus 250 ~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~--------------- 314 (508)
T COG1404 250 LSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL--------------- 314 (508)
T ss_pred ecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC---------------
Confidence 99998511233455555666777777 9999999999866521 11211 24455544321
Q ss_pred EeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCC
Q 045363 313 TSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAP 392 (712)
Q Consensus 313 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~ 392 (712)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEe-
Q 045363 393 TDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILA- 471 (712)
Q Consensus 393 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~s- 471 (712)
.+.++.||++|... ..+++|||.+|.+
T Consensus 315 ----------------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~ 342 (508)
T COG1404 315 ----------------------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSL 342 (508)
T ss_pred ----------------------------------------------CCccccccccCCCC------CcceeCCCcccccc
Confidence 13678899999751 2299999999988
Q ss_pred ----eecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHccccC--CCCCCCCCCCC
Q 045363 472 ----AYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHP-DWSPAAIKSALMTTATP--MKTKSDDAELA 544 (712)
Q Consensus 472 ----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~lsp~~ik~~L~~TA~~--~~~~~~~~~~~ 544 (712)
.+.+ +. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++.. ... ....
T Consensus 343 ~~~~~~~~---------~~--~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 407 (508)
T COG1404 343 SAVNTLPG---------DG--ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSG----VDNL 407 (508)
T ss_pred ccceeeeC---------Cc--cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccccCCc----cccc
Confidence 3332 11 2489999999999999999999999999 89999999999998884 222 4566
Q ss_pred CCCCCcCccccCC
Q 045363 545 SGSGQINPTKAVH 557 (712)
Q Consensus 545 ~G~G~in~~~A~~ 557 (712)
++.|..+...+..
T Consensus 408 ~~~~~~~~~~~~~ 420 (508)
T COG1404 408 VGGGLANLDAAAT 420 (508)
T ss_pred cccCccccccccc
Confidence 7777766666554
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-21 Score=194.93 Aligned_cols=299 Identities=15% Similarity=0.159 Sum_probs=183.6
Q ss_pred chhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCC
Q 045363 86 SEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKS 165 (712)
Q Consensus 86 ~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~ 165 (712)
+...+|..+++|++|+++|+|.||||.|||++.+ ..--.+++| .... +.+++.
T Consensus 149 nv~~awa~g~tgknvttaimddgvdymhpdlk~n-----------------------ynaeasydf-ssnd---pfpypr 201 (629)
T KOG3526|consen 149 NVAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN-----------------------YNAEASYDF-SSND---PFPYPR 201 (629)
T ss_pred cHHHHHhhcccCCCceEEeecCCchhcCcchhcc-----------------------cCceeeccc-ccCC---CCCCCc
Confidence 4568999999999999999999999999999732 112223344 2221 111222
Q ss_pred CCC--CCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHh-CCCcEEEecc
Q 045363 166 PVD--TDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIG-DGVDLISISI 242 (712)
Q Consensus 166 ~~d--~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIN~S~ 242 (712)
..| .+.|||.|||-+++..+|+... .|||.+.++..+|+++. -+-.|+++|-..-.. ..++|.+-||
T Consensus 202 ytddwfnshgtrcagev~aardngicg--------vgvaydskvagirmldq--pymtdlieansmghep~kihiysasw 271 (629)
T KOG3526|consen 202 YTDDWFNSHGTRCAGEVVAARDNGICG--------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASW 271 (629)
T ss_pred ccchhhhccCccccceeeeeccCCcee--------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEeccc
Confidence 223 5789999999999888776543 79999999999999875 344455554322211 3578999999
Q ss_pred CCCCCC-Cccch---HHHHHHHhh-----hcCceEEEecCCCCCCCCcc-c--cCCCceEEEceeccCceeEEEEEeCCC
Q 045363 243 GGPSRS-YFDDS---ISIGSFHAM-----KKGILTACSAGNDGPYQGTV-E--NVAPWIMTVAASSIDRKFVTAVKLGNG 310 (712)
Q Consensus 243 G~~~~~-~~~~~---~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~~~-~--~~~p~vitVga~~~~~~~~~~~~~~~g 310 (712)
|..... ..+.+ ...|+.+-+ ..|-+.|.|.|..|....-. . ..+-|.|++-+.-.+.
T Consensus 272 gptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaindg----------- 340 (629)
T KOG3526|consen 272 GPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAINDG----------- 340 (629)
T ss_pred CcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcCC-----------
Confidence 976322 22222 222222222 23678999999877543211 1 1223444443221110
Q ss_pred ceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEec
Q 045363 311 MRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVD 390 (712)
Q Consensus 311 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~ 390 (712)
+ +..+.+.|.+
T Consensus 341 ~-------------------------------nahydescss-------------------------------------- 351 (629)
T KOG3526|consen 341 E-------------------------------NAHYDESCSS-------------------------------------- 351 (629)
T ss_pred c-------------------------------cccccchhhH--------------------------------------
Confidence 0 1111122221
Q ss_pred CCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEE
Q 045363 391 APTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDIL 470 (712)
Q Consensus 391 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~ 470 (712)
-..+.||+-|.++ +- | +-
T Consensus 352 -------------------------------------------------tlastfsng~rnp--------et---g--va 369 (629)
T KOG3526|consen 352 -------------------------------------------------TLASTFSNGGRNP--------ET---G--VA 369 (629)
T ss_pred -------------------------------------------------HHHHHhhcCCcCC--------Cc---c--ee
Confidence 1345577655443 11 1 11
Q ss_pred eeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCC-------------
Q 045363 471 AAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTK------------- 537 (712)
Q Consensus 471 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~------------- 537 (712)
.+ +-.+.....-||||.|+|-.||+.||.++++|.|+..+++.+-.-|.++..-.
T Consensus 370 tt------------dlyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngv 437 (629)
T KOG3526|consen 370 TT------------DLYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGV 437 (629)
T ss_pred ee------------ccccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEecccc
Confidence 11 22224466789999999999999999999999999999998877777664322
Q ss_pred CCCCCCCCCCCCcCccccCCCCeeeecCcchhhhhhccCCC
Q 045363 538 SDDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGY 578 (712)
Q Consensus 538 ~~~~~~~~G~G~in~~~A~~~~lv~~~~~~dy~~~lc~~g~ 578 (712)
+-..+.-||+|.+|+.+.+....-+...+.. |-|..|.
T Consensus 438 glefnhlfgfgvldagamv~lak~wktvppr---yhc~ag~ 475 (629)
T KOG3526|consen 438 GLEFNHLFGFGVLDAGAMVMLAKAWKTVPPR---YHCTAGL 475 (629)
T ss_pred ceeeecccccccccHHHHHHHHHHhccCCCc---eeecccc
Confidence 0114567999999998877654444444443 4576665
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-17 Score=176.81 Aligned_cols=100 Identities=24% Similarity=0.284 Sum_probs=80.3
Q ss_pred eeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhC---CCcEEEeccCCCCCC---CccchHHHHHHHhhhcCceEEE
Q 045363 197 TARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGD---GVDLISISIGGPSRS---YFDDSISIGSFHAMKKGILTAC 270 (712)
Q Consensus 197 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~---g~dVIN~S~G~~~~~---~~~~~~~~a~~~a~~~Gi~vV~ 270 (712)
...||||+|+|+.|++.+.. ...++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+||+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 34899999999999997642 45677888888887 999999999987432 1235667778888999999999
Q ss_pred ecCCCCCCCC-----------ccccCCCceEEEceeccCc
Q 045363 271 SAGNDGPYQG-----------TVENVAPWIMTVAASSIDR 299 (712)
Q Consensus 271 AAGN~g~~~~-----------~~~~~~p~vitVga~~~~~ 299 (712)
|+||+|.... ..+...|+|++||+++...
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999997653 3467889999999987653
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.7e-09 Score=99.17 Aligned_cols=109 Identities=24% Similarity=0.252 Sum_probs=85.0
Q ss_pred CceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCCc----
Q 045363 325 KAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTDI---- 395 (712)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~~---- 395 (712)
....+++|.+. |....+...+++||||||+|+.| .. +++.+||.|+|++++.....
T Consensus 25 ~~~~~lv~~g~--------------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~-~a~~aGA~gvIi~n~~~~~~~~~~ 89 (143)
T cd02133 25 GKTYELVDAGL--------------GTPEDFEGKDVKGKIALIQRGEITFVEKIA-NAKAAGAVGVIIYNNVDGLIPGTL 89 (143)
T ss_pred CcEEEEEEccC--------------CchhccCCCCccceEEEEECCCCCHHHHHH-HHHHCCCeEEEEeecCCCcccccC
Confidence 45678887643 44555666789999999999987 55 88999999999999876542
Q ss_pred ccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCc
Q 045363 396 AIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQK 452 (712)
Q Consensus 396 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~ 452 (712)
.....+|++.|+.++|..|+.|+.+ .+++.+..+....+.+.++.||||||..
T Consensus 90 ~~~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~~~~~p~va~fSsrgp~g 142 (143)
T cd02133 90 GEAVFIPVVFISKEDGEALKAALES----SKKLTFNTKKEKATNPDLADFSSRGPWG 142 (143)
T ss_pred CCCCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccccccCCccccccCcCCCC
Confidence 1235799999999999999999987 5666666554456667899999999963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.4e-09 Score=95.40 Aligned_cols=115 Identities=37% Similarity=0.481 Sum_probs=89.9
Q ss_pred EEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCc------hhHHhh
Q 045363 305 VKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGS------QDYTID 378 (712)
Q Consensus 305 ~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~------~~~~~~ 378 (712)
++++||+++.|++++.... ..+++++..... .......|.+..+...+++||||||+++.+ .. +++
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~-----~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~-~~~ 73 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS-----GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGD-AVK 73 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC-----CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHH-HHH
Confidence 5789999999999996554 467777633211 223447899888888999999999999775 34 788
Q ss_pred ccCceEEEEEecCCCCc---ccceeeeEEEeChhhHHHHHHHHhcCCCceEE
Q 045363 379 RLQGAGTIVAVDAPTDI---AIATLIAGTFVVPEVGIKIDQYINSTKNPQAV 427 (712)
Q Consensus 379 ~~Ga~g~i~~~~~~~~~---~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 427 (712)
..||.|+|++++..... .....+|++.|+.++++.|+.|++++..++++
T Consensus 74 ~~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 74 AAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred HcCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999999998876542 22467999999999999999999987665543
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.9e-07 Score=81.67 Aligned_cols=88 Identities=18% Similarity=0.302 Sum_probs=61.9
Q ss_pred eeeeecCCCceeEEEEEEEEEcCCCCeeEEEEEeC--------CCC----------c-EEEEeeceEEeecCCcEEEEEE
Q 045363 612 MHFHFTNESSISAIFRRTVTNVGFAKSLYKATVHS--------PKG----------L-SVTVSPRVLTFSRSQQTRSFTV 672 (712)
Q Consensus 612 ~~~~~~~~~~~~~~~~rtv~n~~~~~~ty~~~~~~--------~~g----------~-~v~v~p~~~~~~~~~~~~~~~v 672 (712)
|+|++.. + ..+++++|+|.|+.+.+|+++... ..| . .+...+..+++ ++|++++|+|
T Consensus 1 i~L~d~~-~--~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~v 76 (112)
T PF06280_consen 1 ISLKDTG-N--KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTV 76 (112)
T ss_dssp EEEEEE--S--EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEE
T ss_pred CCccccC-C--ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEE
Confidence 4566663 5 689999999999999999998751 111 1 57778888999 7999999999
Q ss_pred EEEeccc---CCCCeEEEEEEEEc-CC-cEEEeeEE
Q 045363 673 LVKGSMQ---SGASILSALLEWSD-TK-HSVKSPIL 703 (712)
Q Consensus 673 t~~~~~~---~~~~~~~G~i~~~~-~~-~~v~~P~~ 703 (712)
+++.+.. .++.+++|+|.|++ .. ..+++||+
T Consensus 77 ti~~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 77 TITPPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp EEE--GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EEEehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 9999552 44889999999997 34 48999996
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.9e-07 Score=98.09 Aligned_cols=160 Identities=16% Similarity=0.132 Sum_probs=100.8
Q ss_pred ccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCC
Q 045363 84 GMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQ 163 (712)
Q Consensus 84 ~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~ 163 (712)
.+.....|..+++|.++.|+|.|+|++..||++... ....+.+++...+.. +..-
T Consensus 19 d~~v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-----------------------~~~~~s~d~~~~~~~--p~~~ 73 (431)
T KOG3525|consen 19 DLNVQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-----------------------YDPLGSYDVNRHDND--PEPR 73 (431)
T ss_pred cceeeeccccCCCCCceEEEEeeccccccCcccccc-----------------------cCcceeEeeecCCCC--cccc
Confidence 344458999999999999999999999999999742 223334444122211 1111
Q ss_pred CCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHh-CCCcEEEecc
Q 045363 164 KSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIG-DGVDLISISI 242 (712)
Q Consensus 164 ~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIN~S~ 242 (712)
.+......|||-||+-.+...++..-. .|+++++++..++++.. ...+...+...... .-+++-+.||
T Consensus 74 ~~~~~~~~~g~~Ca~~~a~~~~~~~C~--------vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~scsw 142 (431)
T KOG3525|consen 74 CDGTNENKHGTRCAGCVAARANNLTCG--------VGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIYSCSW 142 (431)
T ss_pred cCCCCccccCCCCCcccccccCCCcCC--------CCcccCccccceeeeee---ecccceecccccCCCCCceeecCcC
Confidence 122235889999999999886443322 79999999999999853 11122222222222 3478999999
Q ss_pred CCCCCC----CccchHHHHHHH-----hhhcCceEEEecCCCCCCC
Q 045363 243 GGPSRS----YFDDSISIGSFH-----AMKKGILTACSAGNDGPYQ 279 (712)
Q Consensus 243 G~~~~~----~~~~~~~~a~~~-----a~~~Gi~vV~AAGN~g~~~ 279 (712)
|..... ........+... ...+|-+.|+|.||.|...
T Consensus 143 ~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 143 GPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred CcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 977321 111122222222 2356889999999988554
|
|
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.3e-07 Score=75.84 Aligned_cols=64 Identities=27% Similarity=0.398 Sum_probs=49.0
Q ss_pred chHHHHHHHHHHhCCc----cccccceEEEecceeeeEEEEcCHHHHHHhhcCCCeEEEEeCeeeecc
Q 045363 12 AVKEHHSLLTTAIGDE----KLARESKIRSYGKSFNGFVARLLPHEAKRLSEEESVVSVFENTRRKLH 75 (712)
Q Consensus 12 ~~~~h~~~~~~~~~~~----~~~~~~v~~~y~~~~ng~s~~l~~~~i~~l~~~p~V~~V~~~~~~~~~ 75 (712)
....|.+++.+++.+. .....++++.|+..||||+++++++++++|+++|+|++|+|++.++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 15 SFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp HHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred hHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 3667777777665421 245789999999999999999999999999999999999999988764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.2e-06 Score=96.49 Aligned_cols=94 Identities=19% Similarity=0.263 Sum_probs=57.3
Q ss_pred eeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhCCC-cEEEeccCCCC---CCC--ccchHHHHHHHhhhcCceEEEe
Q 045363 198 ARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGV-DLISISIGGPS---RSY--FDDSISIGSFHAMKKGILTACS 271 (712)
Q Consensus 198 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~-dVIN~S~G~~~---~~~--~~~~~~~a~~~a~~~Gi~vV~A 271 (712)
..-+||+|+|..+-. ..+ .......|+.+....-+ -++-.||+... ..+ .-+..+.-.+.|..+|+.+++|
T Consensus 288 s~A~AP~A~I~lvva--p~~-~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AA 364 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PNP-LVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAA 364 (1174)
T ss_pred hhccCccCceEEEEc--CCC-ceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEe
Confidence 367899999998866 222 22222233333222111 33335666431 111 3344555566788899999999
Q ss_pred cCCCCCCCCc--------cccCCCceEEEce
Q 045363 272 AGNDGPYQGT--------VENVAPWIMTVAA 294 (712)
Q Consensus 272 AGN~g~~~~~--------~~~~~p~vitVga 294 (712)
+|.+|....+ .++.+|+|++||.
T Consensus 365 SGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 365 SGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred cccccccCCCcccceeecccCCCccEEeecC
Confidence 9999866542 4467899999997
|
|
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.8e-06 Score=74.84 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=65.0
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC-----c--c-cceeeeEEEeChhhHHH
Q 045363 347 VGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD-----I--A-IATLIAGTFVVPEVGIK 413 (712)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~-----~--~-~~~~~p~~~i~~~~g~~ 413 (712)
...|.+..+...+++||||||+|+.| .. +++++||.++|++++.... + . ....+|+++|+.++|+.
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~-~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~ 107 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQK-VAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAA 107 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHH-HHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHH
Confidence 36799888888899999999999987 45 8999999999999987632 1 1 34569999999999999
Q ss_pred HHHHHhcCCCceE
Q 045363 414 IDQYINSTKNPQA 426 (712)
Q Consensus 414 l~~~~~~~~~~~~ 426 (712)
|++++.++.+.++
T Consensus 108 l~~~l~~g~~v~~ 120 (122)
T cd04816 108 LRRRLGAGETLEL 120 (122)
T ss_pred HHHHHcCCCEEEE
Confidence 9999987765443
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.9e-06 Score=73.53 Aligned_cols=71 Identities=24% Similarity=0.272 Sum_probs=57.3
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC-------cccceeeeEEEeChhhHHHH
Q 045363 347 VGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD-------IAIATLIAGTFVVPEVGIKI 414 (712)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~-------~~~~~~~p~~~i~~~~g~~l 414 (712)
...|.+......+++||||||+|+.| .. +++.+||.|+|+++..... ......||+++|+.++|+.|
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~-~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVR-NAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHH-HHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHH-HHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 45677788889999999999999988 56 8999999999999922211 24568899999999999999
Q ss_pred HHHH
Q 045363 415 DQYI 418 (712)
Q Consensus 415 ~~~~ 418 (712)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9986
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.3e-05 Score=69.58 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecC-CCCc------ccceeeeEEEeChhhHHHHH
Q 045363 348 GACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDA-PTDI------AIATLIAGTFVVPEVGIKID 415 (712)
Q Consensus 348 ~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~-~~~~------~~~~~~p~~~i~~~~g~~l~ 415 (712)
..|.+..+ +.+++|||||++|+.| .. +++.+||.++|++++. ...+ .+...+|++.|+.++|+.|+
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~-~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~ 109 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSA-LAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALV 109 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHH-HHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHH
Confidence 46876555 3579999999999988 56 8999999999999987 3321 23467999999999999999
Q ss_pred HHHhcCCCceEE
Q 045363 416 QYINSTKNPQAV 427 (712)
Q Consensus 416 ~~~~~~~~~~~~ 427 (712)
..+.++.+.+++
T Consensus 110 ~~l~~g~~v~~~ 121 (122)
T cd02130 110 AALANGGEVSAN 121 (122)
T ss_pred HHHhcCCcEEEe
Confidence 999887665543
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=71.21 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=62.5
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC--c-----ccceeeeEEEeChhhHHHH
Q 045363 347 VGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD--I-----AIATLIAGTFVVPEVGIKI 414 (712)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~--~-----~~~~~~p~~~i~~~~g~~l 414 (712)
...|.+..+. .+++||||||+|+.| .. +++..||.|+|++++.... . .....+|++.++.++|..|
T Consensus 27 ~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~-~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 27 TDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVL-NAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred ccccCCCCcC-CCCCCEEEEEECCCCCHHHHHH-HHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 4679888774 469999999999877 44 7889999999999887642 1 1235799999999999999
Q ss_pred HHHHhcCCCceE
Q 045363 415 DQYINSTKNPQA 426 (712)
Q Consensus 415 ~~~~~~~~~~~~ 426 (712)
+.|++.+.+.+.
T Consensus 105 ~~~l~~g~~v~v 116 (118)
T cd04818 105 KAALAAGGTVTV 116 (118)
T ss_pred HHHHhcCCcEEE
Confidence 999997665443
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.9e-05 Score=69.62 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=67.8
Q ss_pred ceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC-----c
Q 045363 326 AMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD-----I 395 (712)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~-----~ 395 (712)
..+|++.... ...|.+..+...+++|||+|++||.| .. +++.+||.++|++|+.... .
T Consensus 20 ~~~~~~~~~~-----------~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~-~Aq~aGA~aVII~nn~~~~~~~~~~ 87 (120)
T cd02129 20 TLLPLRNLTS-----------SVLCSASDVPPGGLKGKAVVVMRGNCTFYEKAR-LAQSLGAEGLLIVSRERLVPPSGNR 87 (120)
T ss_pred cceeeecCCC-----------cCCCCccccCccccCCeEEEEECCCcCHHHHHH-HHHHCCCCEEEEEECCCCCCCCCCC
Confidence 4567766543 46799988888899999999999998 56 8999999999999987631 1
Q ss_pred --ccceeeeEEEeChhhHHHHHHHHhc
Q 045363 396 --AIATLIAGTFVVPEVGIKIDQYINS 420 (712)
Q Consensus 396 --~~~~~~p~~~i~~~~g~~l~~~~~~ 420 (712)
.....||+++|+.++|+.|.+.+.+
T Consensus 88 ~~~~~v~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 88 SEYEKIDIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred CCCcCCcccEEEEeHHHHHHHHHHhcc
Confidence 2446789999999999999998864
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.1e-05 Score=70.93 Aligned_cols=80 Identities=10% Similarity=0.057 Sum_probs=65.6
Q ss_pred cCCCCCCCC--CCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCC-CC--c----ccceeeeEEEeChhhHH
Q 045363 347 VGACDYGTL--SMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAP-TD--I----AIATLIAGTFVVPEVGI 412 (712)
Q Consensus 347 ~~~c~~~~~--~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~-~~--~----~~~~~~p~~~i~~~~g~ 412 (712)
...|.+... +..++.|+|+|++|+.| .. +++.+||.++|++++.. .. + .....+|.++|+..+|+
T Consensus 44 ~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~-nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 44 HYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIK-LAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred cCCCCCCccccCCccCCCeEEEEECCCCCHHHHHH-HHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 467988776 56789999999999998 56 89999999999999986 21 1 22357899999999999
Q ss_pred HHHHHHhcCCCceEE
Q 045363 413 KIDQYINSTKNPQAV 427 (712)
Q Consensus 413 ~l~~~~~~~~~~~~~ 427 (712)
.|+.++.++.+.+.+
T Consensus 123 ~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 123 EILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHcCCcEEEe
Confidence 999999887665543
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.8e-05 Score=68.00 Aligned_cols=80 Identities=16% Similarity=0.264 Sum_probs=64.5
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC----c-------ccceeeeEEEeChhh
Q 045363 347 VGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD----I-------AIATLIAGTFVVPEV 410 (712)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~----~-------~~~~~~p~~~i~~~~ 410 (712)
.+.|.+.. ...+++|||+|++|+.| .. +++++||.++|++++.... + .....||+++|+..+
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~-~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~d 98 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAI-NAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKN 98 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHH-HHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHH
Confidence 35788643 35689999999999998 55 8999999999999976531 1 123579999999999
Q ss_pred HHHHHHHHhcCCCceEEE
Q 045363 411 GIKIDQYINSTKNPQAVI 428 (712)
Q Consensus 411 g~~l~~~~~~~~~~~~~~ 428 (712)
|+.|+..+..+..+++.|
T Consensus 99 G~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 99 GYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHcCCceEEee
Confidence 999999999888776654
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.9e-05 Score=70.01 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=63.0
Q ss_pred cCCCCCCC--CCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC--c--c-----cceeeeEEEeChhh
Q 045363 347 VGACDYGT--LSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD--I--A-----IATLIAGTFVVPEV 410 (712)
Q Consensus 347 ~~~c~~~~--~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~--~--~-----~~~~~p~~~i~~~~ 410 (712)
...|.++. +...+++||||||+++.| .. +++.+||.|+|++++.... . . ....+|++.|+.++
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~-~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVK-NAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCCcCHHHHHH-HHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 45687776 778899999999999877 55 7889999999999987632 1 1 34579999999999
Q ss_pred HHHHHHHHhcCCCce
Q 045363 411 GIKIDQYINSTKNPQ 425 (712)
Q Consensus 411 g~~l~~~~~~~~~~~ 425 (712)
|..|+.|+.+..+.+
T Consensus 109 g~~l~~~~~~~~~v~ 123 (126)
T cd00538 109 GEALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHHHhcCCceE
Confidence 999999998755433
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00012 Score=68.07 Aligned_cols=75 Identities=12% Similarity=0.193 Sum_probs=60.7
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCCc-----c----cceeeeEEEeChhhHH
Q 045363 347 VGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTDI-----A----IATLIAGTFVVPEVGI 412 (712)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~~-----~----~~~~~p~~~i~~~~g~ 412 (712)
.+.|.+.. .+++|||+|++|+.| .. +++++||.++|++++..... . ....||+++|+..+|+
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~-nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~ 123 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAK-IAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGD 123 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHH-HHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHH
Confidence 36788754 479999999999998 56 99999999999998775321 0 1357999999999999
Q ss_pred HHHHHHhcCCCce
Q 045363 413 KIDQYINSTKNPQ 425 (712)
Q Consensus 413 ~l~~~~~~~~~~~ 425 (712)
.|+.++.++...+
T Consensus 124 ~L~~~l~~g~~Vt 136 (139)
T cd02132 124 ALNKSLDQGKKVE 136 (139)
T ss_pred HHHHHHHcCCcEE
Confidence 9999998776544
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.6e-05 Score=67.89 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=61.0
Q ss_pred cCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC-------c-----c---cceeeeEEEe
Q 045363 347 VGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD-------I-----A---IATLIAGTFV 406 (712)
Q Consensus 347 ~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~-------~-----~---~~~~~p~~~i 406 (712)
...|.+... +.+++|||+|++|+.| .. +++.+||.++|++++.... + . ....||+++|
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~-~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I 104 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKAR-RVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFL 104 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHH-HHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEE
Confidence 357886544 5678999999999998 55 8999999999999876531 1 1 2457999999
Q ss_pred ChhhHHHHHHHHhcCCCce
Q 045363 407 VPEVGIKIDQYINSTKNPQ 425 (712)
Q Consensus 407 ~~~~g~~l~~~~~~~~~~~ 425 (712)
+..+|+.|+.++......+
T Consensus 105 ~~~dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 105 FSKEGSKLLAAIKEHQNVE 123 (126)
T ss_pred EHHHHHHHHHHHHhCCceE
Confidence 9999999999998765543
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00025 Score=64.83 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=61.3
Q ss_pred cCCCCCCCCC--CC----cccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCCc--------------ccceee
Q 045363 347 VGACDYGTLS--MK----KVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTDI--------------AIATLI 401 (712)
Q Consensus 347 ~~~c~~~~~~--~~----~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~~--------------~~~~~~ 401 (712)
.+.|.+.... +. ...++|+|++|+.| .. +++.+||.++|++++....+ .....|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~-~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAW-NAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHH-HHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 3578765542 22 47899999999998 55 89999999999999876431 113369
Q ss_pred eEEEeChhhHHHHHHHHhcCCCceE
Q 045363 402 AGTFVVPEVGIKIDQYINSTKNPQA 426 (712)
Q Consensus 402 p~~~i~~~~g~~l~~~~~~~~~~~~ 426 (712)
|+++|+.++|+.|+..+.++...+.
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEE
Confidence 9999999999999999988766544
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00015 Score=65.25 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=59.3
Q ss_pred CcCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC----c-----ccceeeeEEEeChhhH
Q 045363 346 NVGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD----I-----AIATLIAGTFVVPEVG 411 (712)
Q Consensus 346 ~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~----~-----~~~~~~p~~~i~~~~g 411 (712)
..+.|.+. +..+++|||+|++|+.| .. +++.+||.++|++|+.... + .....+|+++++.+++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~-nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVM-WAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHH-HHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 34679766 66889999999999998 56 8999999999999877642 1 2345799999999999
Q ss_pred HHHHHHHhcC
Q 045363 412 IKIDQYINST 421 (712)
Q Consensus 412 ~~l~~~~~~~ 421 (712)
+.|..++...
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9999887653
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00017 Score=66.10 Aligned_cols=79 Identities=14% Similarity=0.067 Sum_probs=61.4
Q ss_pred CcCCCCCCCCCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCCc----ccceeeeEEEeChhhHHHHHH
Q 045363 346 NVGACDYGTLSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTDI----AIATLIAGTFVVPEVGIKIDQ 416 (712)
Q Consensus 346 ~~~~c~~~~~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~~----~~~~~~p~~~i~~~~g~~l~~ 416 (712)
....|.+...+..+++|||+|++|+.| .. +++.+||.++|++++..... .+...+|.+.+ .++|+.|++
T Consensus 40 ~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~-nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 40 ADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAA-NAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CcccCcCCCcccccccCeEEEEECCCCCHHHHHH-HHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 446898776666689999999999988 56 89999999999999876432 33344666666 999999999
Q ss_pred HHhcCCCceE
Q 045363 417 YINSTKNPQA 426 (712)
Q Consensus 417 ~~~~~~~~~~ 426 (712)
.+..+...++
T Consensus 118 ~l~~G~~vtv 127 (129)
T cd02124 118 ALAAGSNVTV 127 (129)
T ss_pred HHhcCCeEEE
Confidence 9987655443
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00035 Score=64.55 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=54.1
Q ss_pred CCCCCcccceEEEEecCCch----------hHHhhccCceEEEEEecC--CCC----ccc---ceeeeEEEeChhhHHHH
Q 045363 354 TLSMKKVKGKIVYCLGSGSQ----------DYTIDRLQGAGTIVAVDA--PTD----IAI---ATLIAGTFVVPEVGIKI 414 (712)
Q Consensus 354 ~~~~~~~~gkivl~~~~~~~----------~~~~~~~Ga~g~i~~~~~--~~~----~~~---~~~~p~~~i~~~~g~~l 414 (712)
.+.+.+++|||+|++|+.|. + +++++||.++|++|+. .+. +.+ ...||++.++.++|+.|
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~-~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L 127 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVK-ACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQAL 127 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHH-HHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHH
Confidence 34456899999999999773 4 8899999999999998 432 121 46899999999999999
Q ss_pred HHHHhcC
Q 045363 415 DQYINST 421 (712)
Q Consensus 415 ~~~~~~~ 421 (712)
+..+...
T Consensus 128 ~~~l~~~ 134 (139)
T cd04817 128 LAALGQS 134 (139)
T ss_pred HHHhcCC
Confidence 9988643
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0011 Score=60.86 Aligned_cols=83 Identities=13% Similarity=0.078 Sum_probs=62.4
Q ss_pred CceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCc-------hhHHhhccCceEEEEEecCCCCc--
Q 045363 325 KAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGS-------QDYTIDRLQGAGTIVAVDAPTDI-- 395 (712)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-------~~~~~~~~Ga~g~i~~~~~~~~~-- 395 (712)
..+.++++.+. +.+..+...+++|||||++++.+ .. ++...||.|+|++++....+
T Consensus 22 ~~~~~lV~~g~--------------G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~-~A~~~GA~avi~~~~~~g~~~~ 86 (127)
T cd04819 22 EAKGEPVDAGY--------------GLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYA-KAVAAGAAAFVVVNTVPGVLPA 86 (127)
T ss_pred CeeEEEEEeCC--------------CCHHHcCCCCCCCeEEEEEcCCCchhHHHHHH-HHHHCCCEEEEEEeCCCCcCcc
Confidence 45677877653 22223445679999999999866 45 88899999999998766532
Q ss_pred --------ccceeeeEEEeChhhHHHHHHHHhcCC
Q 045363 396 --------AIATLIAGTFVVPEVGIKIDQYINSTK 422 (712)
Q Consensus 396 --------~~~~~~p~~~i~~~~g~~l~~~~~~~~ 422 (712)
.....+|++.|+.++++.|...++.+.
T Consensus 87 ~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 87 TGDEGTEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred cccccccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 123569999999999999999998643
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00053 Score=64.87 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=61.9
Q ss_pred cCCCCCCCCCC---CcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCCc----c-----cceeeeEEEeChh
Q 045363 347 VGACDYGTLSM---KKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTDI----A-----IATLIAGTFVVPE 409 (712)
Q Consensus 347 ~~~c~~~~~~~---~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~~----~-----~~~~~p~~~i~~~ 409 (712)
.+.|.+....+ .++.|||+|++||.| .. +++.+||.++|++++..... . ....||+++|+.+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~-nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~ 128 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVR-NAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKS 128 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHH-HHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHH
Confidence 35788766543 889999999999998 56 89999999999999875431 1 2458999999999
Q ss_pred hHHHHHHHHhcCCC
Q 045363 410 VGIKIDQYINSTKN 423 (712)
Q Consensus 410 ~g~~l~~~~~~~~~ 423 (712)
+|+.|+.++.....
T Consensus 129 dg~~L~~~l~~~~~ 142 (153)
T cd02123 129 TGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999986543
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.017 Score=53.47 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=54.1
Q ss_pred CCCcccceEEEEecCCc------------------hhHHhhccCceEEEEEecCCC-------C-c---ccceeeeEEEe
Q 045363 356 SMKKVKGKIVYCLGSGS------------------QDYTIDRLQGAGTIVAVDAPT-------D-I---AIATLIAGTFV 406 (712)
Q Consensus 356 ~~~~~~gkivl~~~~~~------------------~~~~~~~~Ga~g~i~~~~~~~-------~-~---~~~~~~p~~~i 406 (712)
...+++|||||+.++.| .. .+.+.||.++|+++.... . + .....+|++.|
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~-~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAV-EAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHH-HHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 45689999999999888 46 888999999999985421 1 1 22346999999
Q ss_pred ChhhHHHHHHHHhcCCCce
Q 045363 407 VPEVGIKIDQYINSTKNPQ 425 (712)
Q Consensus 407 ~~~~g~~l~~~~~~~~~~~ 425 (712)
+.+++..|...+..+....
T Consensus 113 s~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 113 SVEDADMLERLAARGKPIR 131 (134)
T ss_pred chhcHHHHHHHHhCCCCeE
Confidence 9999999999988765443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.12 Score=45.06 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=61.2
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEecccCCCCeEEEEEEEEcCCcEEEeeE
Q 045363 623 SAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSDTKHSVKSPI 702 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~~~v~~P~ 702 (712)
..+.+++|+|.+.....|++.........++++|..-.+ ++|++.+++|++..... .+.+++.|........+.+|+
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~~--~g~~~~~l~i~~e~~~~~i~v 97 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTKP--LGDYEGSLVITTEGGSFEIPV 97 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCCC--CceEEEEEEEEECCeEEEEEE
Confidence 667788999999999999997754334557777776666 78999999999995432 456789988876666788887
Q ss_pred EEE
Q 045363 703 LVY 705 (712)
Q Consensus 703 ~~~ 705 (712)
-..
T Consensus 98 ~a~ 100 (102)
T PF14874_consen 98 KAE 100 (102)
T ss_pred EEE
Confidence 654
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.11 Score=42.92 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=37.7
Q ss_pred eEEEEEEEEEcCCCC-eeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEeccc
Q 045363 623 SAIFRRTVTNVGFAK-SLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQ 679 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~ 679 (712)
+.+++.+|+|.|... ...++++..|+|-++...|..+.--++|++++++++|+....
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 789999999999765 568888888999998888887764489999999999998764
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.72 Score=41.47 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=42.8
Q ss_pred CceeEEEEEEEEEcCCCCeeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEecccC
Q 045363 620 SSISAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQS 680 (712)
Q Consensus 620 ~~~~~~~~rtv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~ 680 (712)
+...-..+..|+|....+.+|++++..++|+++......+.+ ++|++.++.|.|..+...
T Consensus 29 g~I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 29 GSIRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp -SEEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred CeEEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 445778889999999999999999999889999665578888 789999999999988744
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.1 Score=40.58 Aligned_cols=81 Identities=14% Similarity=0.219 Sum_probs=58.2
Q ss_pred CCceeeeecCCCceeEEEEEEEEEcCCCCeeEEEEEeC----CCCc--------------------EEEEeeceEEeecC
Q 045363 609 YPSMHFHFTNESSISAIFRRTVTNVGFAKSLYKATVHS----PKGL--------------------SVTVSPRVLTFSRS 664 (712)
Q Consensus 609 ~ps~~~~~~~~~~~~~~~~rtv~n~~~~~~ty~~~~~~----~~g~--------------------~v~v~p~~~~~~~~ 664 (712)
...|-+....+. +.+++++|+|.++.+.+|.+.+.. ..|+ -+++ |..+++ ++
T Consensus 16 ~~YFdL~~~P~q--~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~ 91 (121)
T PF06030_consen 16 VSYFDLKVKPGQ--KQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PP 91 (121)
T ss_pred CCeEEEEeCCCC--EEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CC
Confidence 345555555534 899999999999999999987631 1110 0222 344777 79
Q ss_pred CcEEEEEEEEEecccCCCCeEEEEEEEEc
Q 045363 665 QQTRSFTVLVKGSMQSGASILSALLEWSD 693 (712)
Q Consensus 665 ~~~~~~~vt~~~~~~~~~~~~~G~i~~~~ 693 (712)
+++++++++++.+...-.+.+-|.|.++.
T Consensus 92 ~~sk~V~~~i~~P~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 92 NESKTVTFTIKMPKKAFDGIILGGIYFSE 120 (121)
T ss_pred CCEEEEEEEEEcCCCCcCCEEEeeEEEEe
Confidence 99999999999988666777888888763
|
|
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.15 Score=49.40 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=48.8
Q ss_pred CCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCC-------------------C-----c---c--------
Q 045363 357 MKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPT-------------------D-----I---A-------- 396 (712)
Q Consensus 357 ~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~-------------------~-----~---~-------- 396 (712)
..+++|||||++++.+ .. +++..||+|+|++++... + . .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~-~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~ 129 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVA-NAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQ 129 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHH-HHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCccc
Confidence 4689999999999877 56 899999999999987310 0 0 0
Q ss_pred --cceeeeEEEeChhhHHHHHHHHhc
Q 045363 397 --IATLIAGTFVVPEVGIKIDQYINS 420 (712)
Q Consensus 397 --~~~~~p~~~i~~~~g~~l~~~~~~ 420 (712)
.--.||++-|+..++..|+..+.-
T Consensus 130 ~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 130 SSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred ccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 012488999999999999998853
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.88 Score=42.78 Aligned_cols=83 Identities=18% Similarity=0.072 Sum_probs=54.7
Q ss_pred ceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCC------------------c-----hhHHhhccCc
Q 045363 326 AMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSG------------------S-----QDYTIDRLQG 382 (712)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~------------------~-----~~~~~~~~Ga 382 (712)
.+-+++|.+.. .....|....+...+++|||||+.++. + .. ++...||
T Consensus 20 vtg~lVfvGyG--------i~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~-~A~~~GA 90 (151)
T cd04822 20 VTAPVVFAGYG--------ITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKAT-NARRHGA 90 (151)
T ss_pred ceEeEEEecCC--------cCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHH-HHHHCCC
Confidence 35677776532 123456666677889999999997763 1 44 7789999
Q ss_pred eEEEEEecCCCCcccceeee------EEEeChhhHHHHHHH
Q 045363 383 AGTIVAVDAPTDIAIATLIA------GTFVVPEVGIKIDQY 417 (712)
Q Consensus 383 ~g~i~~~~~~~~~~~~~~~p------~~~i~~~~g~~l~~~ 417 (712)
.|+|++++.....+....+| .+.++....+.+...
T Consensus 91 ~aVIv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 91 AAVIVVNGPNSHSGDADRLPRFGGTAPQRVDIAAADPWFTA 131 (151)
T ss_pred eEEEEEeCCcccCcccccccccCccceEEechHHHHHHhhh
Confidence 99999998765432222222 556666666666654
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.6 Score=43.11 Aligned_cols=58 Identities=21% Similarity=0.141 Sum_probs=43.2
Q ss_pred ceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCc-----------------hhHHhhccCceEEEEE
Q 045363 326 AMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGS-----------------QDYTIDRLQGAGTIVA 388 (712)
Q Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----------------~~~~~~~~Ga~g~i~~ 388 (712)
.+-+++|.+.. .....|....+...+++|||||+.++.+ .+ .+...||.|+|++
T Consensus 22 v~gelVfvGyG--------~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~-~A~~~GA~aVIi~ 92 (137)
T cd04820 22 VEAPLVFVGYG--------LVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKAR-YAAKAGAIGMITL 92 (137)
T ss_pred ceEeEEEecCC--------cCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHH-HHHHCCCeEEEEE
Confidence 45677776532 1234577777778899999999998763 44 7889999999999
Q ss_pred ecCC
Q 045363 389 VDAP 392 (712)
Q Consensus 389 ~~~~ 392 (712)
++..
T Consensus 93 ~d~~ 96 (137)
T cd04820 93 TTPR 96 (137)
T ss_pred eCCc
Confidence 9853
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.53 Score=43.77 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=43.8
Q ss_pred CceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCc-----------------------hhHHhhccC
Q 045363 325 KAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGS-----------------------QDYTIDRLQ 381 (712)
Q Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-----------------------~~~~~~~~G 381 (712)
....++++.+.. .....|....+...+++|||||+.++.| .. .+...|
T Consensus 19 ~~~aelVfvGyG--------i~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~-~A~~~G 89 (142)
T cd04814 19 IKDAPLVFVGYG--------IKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYE-EAARHG 89 (142)
T ss_pred ccceeeEEecCC--------cCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHH-HHHHCC
Confidence 346778876532 1234577778888899999999987643 33 778899
Q ss_pred ceEEEEEecCC
Q 045363 382 GAGTIVAVDAP 392 (712)
Q Consensus 382 a~g~i~~~~~~ 392 (712)
|.|+|++++..
T Consensus 90 A~gvIii~~~~ 100 (142)
T cd04814 90 AAGVLIVHELA 100 (142)
T ss_pred CcEEEEEeCCC
Confidence 99999999865
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.95 E-value=3.3 Score=45.32 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=62.3
Q ss_pred eeeeecCCCceeEEEEEEEEEcCCCC-eeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEecccCCCCeEEEEEE
Q 045363 612 MHFHFTNESSISAIFRRTVTNVGFAK-SLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLE 690 (712)
Q Consensus 612 ~~~~~~~~~~~~~~~~rtv~n~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~ 690 (712)
..+....+. ..++...++|.|+.+ ..-++++..|.|-++.|+|.++---++|++.++.+|++.+.....+-++=+|+
T Consensus 389 ~~lt~taGe--e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~ 466 (513)
T COG1470 389 YRLTITAGE--EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITIT 466 (513)
T ss_pred EEEEecCCc--cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEE
Confidence 444444433 778889999999876 55688999999999999999776668999999999999988665555666666
Q ss_pred EEc
Q 045363 691 WSD 693 (712)
Q Consensus 691 ~~~ 693 (712)
-+.
T Consensus 467 ~ks 469 (513)
T COG1470 467 AKS 469 (513)
T ss_pred Eee
Confidence 554
|
|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.86 E-value=9.4 Score=41.95 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=45.7
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEe-CCCCcEEEEeec-----eEEeecCCcEEEEEEEEEeccc
Q 045363 623 SAIFRRTVTNVGFAKSLYKATVH-SPKGLSVTVSPR-----VLTFSRSQQTRSFTVLVKGSMQ 679 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty~~~~~-~~~g~~v~v~p~-----~~~~~~~~~~~~~~vt~~~~~~ 679 (712)
+..|++++.|.|..+.+|.+++. .|+|-...+.-. ++.+ .+||+++|+|.|.....
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~n 346 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLN 346 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCC
Confidence 77899999999999999999998 688766555433 4555 68999999999998764
|
|
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=85.66 E-value=6.1 Score=35.54 Aligned_cols=68 Identities=19% Similarity=0.108 Sum_probs=47.6
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEeC---CCC----cEEEEeeceEEeecCCcEEEEEEEEEecccCCCCeEEEEEEEE
Q 045363 623 SAIFRRTVTNVGFAKSLYKATVHS---PKG----LSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWS 692 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty~~~~~~---~~g----~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~ 692 (712)
..+.+++|+|.++.+..+.+.+.. .+. -.+-++|..+.+ ++|+++.|.| +.......+.-..=+|.++
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 446688999999988888877764 111 257799999999 7999999999 7754433344444456664
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=85.26 E-value=1.3 Score=44.51 Aligned_cols=35 Identities=29% Similarity=0.279 Sum_probs=30.2
Q ss_pred CCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCC
Q 045363 357 MKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAP 392 (712)
Q Consensus 357 ~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~ 392 (712)
..+++|||||++++.+ .. +++..||+|+|++++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~-~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVK-NAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHH-HHHHcCCEEEEEEeCch
Confidence 5789999999998866 56 88999999999999853
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.14 E-value=3.3 Score=45.41 Aligned_cols=71 Identities=10% Similarity=0.167 Sum_probs=56.4
Q ss_pred CCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC---------cccceeeeEEEeChhhHHHHHHHHhcCC
Q 045363 357 MKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD---------IAIATLIAGTFVVPEVGIKIDQYINSTK 422 (712)
Q Consensus 357 ~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~---------~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 422 (712)
...+++|+++..||.| .. .++++||.++++.|+.... ...+..||++++.+++++.+.....++.
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~-~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~ 169 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAK-LAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSND 169 (541)
T ss_pred CccccceeEEEecccceeehhhh-hhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCC
Confidence 4678999999999998 66 8899999999999985422 1345779999999999999998666665
Q ss_pred CceEEE
Q 045363 423 NPQAVI 428 (712)
Q Consensus 423 ~~~~~~ 428 (712)
+.++.+
T Consensus 170 ~V~~~l 175 (541)
T KOG2442|consen 170 NVELAL 175 (541)
T ss_pred eEEEEE
Confidence 554443
|
|
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=84.88 E-value=1.1 Score=41.90 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=29.8
Q ss_pred CcccceEEEEecCCc-----hhHHhhccCceEEEEEecCC
Q 045363 358 KKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAP 392 (712)
Q Consensus 358 ~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~ 392 (712)
.+++|||+|++.|.. .+ +++..||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~-~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLS-LLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHH-HHHHCCCeEEEEecChh
Confidence 679999999998765 67 99999999999999853
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.77 E-value=1.1 Score=52.56 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=34.5
Q ss_pred eceEEeecCCcEEEEEEEEEecccCCCCeEEEEEEEEc-----CCcEEEeeEEEEec
Q 045363 656 PRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSD-----TKHSVKSPILVYKQ 707 (712)
Q Consensus 656 p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~~-----~~~~v~~P~~~~~~ 707 (712)
|+.|-+ .++.+.+.|+|+++... .+..++.|.=-| ..+.+|||+-|-..
T Consensus 636 p~~l~l--~~~~R~i~VrVDpt~l~-~G~hy~eV~gyD~~~p~~gplFrIPVTVi~P 689 (1304)
T KOG1114|consen 636 PEYLML--ANQGRGINVRVDPTGLA-PGVHYTEVLGYDTANPSRGPLFRIPVTVIKP 689 (1304)
T ss_pred chhhee--ccCCceeEEEECCcCCC-CCcceEEEEEeecCCcccCceEEeeeEEEcc
Confidence 455555 56789999999998755 556666665433 46889999987543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 712 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-163 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 6e-98 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 1e-11 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 2e-10 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 2e-09 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 7e-06 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 8e-06 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 8e-06 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 9e-06 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 1e-05 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 1e-05 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 1e-05 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 1e-05 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 1e-05 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 1e-05 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 1e-05 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 1e-05 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 1e-05 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 2e-05 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 2e-05 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 2e-05 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 2e-05 | ||
| 2wv7_A | 329 | Intracellular Subtilisin Precursor From B. Clausii | 2e-05 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 3e-05 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 3e-05 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 4e-05 | ||
| 2xrm_A | 311 | Processed Intracellular Subtilisin From B. Clausii | 4e-05 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 4e-05 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 5e-05 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 5e-05 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 7e-05 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 7e-05 | ||
| 3lpc_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 9e-05 | ||
| 3lpd_A | 339 | Crystal Structure Of A Subtilisin-Like Protease Len | 9e-05 | ||
| 3lpa_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 9e-05 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 1e-04 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 2e-04 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 2e-04 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 3e-04 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 3e-04 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 3e-04 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 3e-04 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 4e-04 | ||
| 2x8j_B | 327 | Intracellular Subtilisin Precursor From B. Clausii | 4e-04 | ||
| 2x8j_A | 327 | Intracellular Subtilisin Precursor From B. Clausii | 5e-04 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 7e-04 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 8e-04 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 8e-04 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 9e-04 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 9e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii Length = 329 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii Length = 311 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 339 | Back alignment and structure |
|
| >pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii Length = 327 | Back alignment and structure |
|
| >pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii Length = 327 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 665 bits (1716), Expect = 0.0
Identities = 302/632 (47%), Positives = 417/632 (65%), Gaps = 16/632 (2%)
Query: 76 TTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTG 135
TTR+WDFLG + +RS + +SNI+VG+LDTGIW ESPSF+D+GF PPP KWKG C T
Sbjct: 1 TTRSWDFLGFPLTVPRRS-QVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETS 59
Query: 136 ANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQ 195
NF CN+K+IGAR Y++ + P D P DT+GHGTHT+STAAG V A+LYG+
Sbjct: 60 NNFR-CNRKIIGARSYHIGRPISPG-DVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGL 117
Query: 196 GTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGPS-RSYFDDSI 254
GTARGGVP ARIA YKVCW+ GC+D DILAA+DDAI DGVD+IS+S+GG + R YF D+I
Sbjct: 118 GTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAI 177
Query: 255 SIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTS 314
+IGSFHA+++GILT+ SAGN GP T +++PW+++VAAS++DRKFVT V++GNG
Sbjct: 178 AIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQ 237
Query: 315 GISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQD 374
G+SINTF + YPL +G N + C +++ +KGKIV C S
Sbjct: 238 GVSINTFDNQ--YYPLVSGRDIPNTGFDKS-TSRFCTDKSVNPNLLKGKIVVCEASFGPH 294
Query: 375 YTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVV 434
L GA ++ D A + + + + P + +YI S ++P A I+K+ +
Sbjct: 295 EFFKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTI 354
Query: 435 NTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNIL 494
++AP + SFSSRGP + T +++KPDI+ PG++ILAA+ +A V G RR FNI+
Sbjct: 355 LNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVG---GIRRNTLFNII 411
Query: 495 SGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMK-TKSDDAELASGSGQINPT 553
SGTSM+CPH A YVK+++P WSPAAIKSALMTTA+PM + AE A GSG +NP
Sbjct: 412 SGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNPL 471
Query: 554 KAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNCSTIRPAQGLDGLNYPSMH 613
KAV PGL+YD N S Y +FLC +GYN+ A+ R+ G C++ + D LNYPS
Sbjct: 472 KAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGD--YSACTSGNTGRVWD-LNYPSFG 528
Query: 614 FHFTNESSISAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVL 673
+ + + F RT+T+V S Y+A + +P+GL+++V+P VL+F+ +SFT+
Sbjct: 529 LSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLT 588
Query: 674 VKGSMQSGASILSALLEWSDTKHSVKSPILVY 705
V+GS++ ++SA L WSD H V+SPI +
Sbjct: 589 VRGSIKGF--VVSASLVWSDGVHYVRSPITIT 618
|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 621 bits (1603), Expect = 0.0
Identities = 233/657 (35%), Positives = 335/657 (50%), Gaps = 41/657 (6%)
Query: 76 TTRTWDFLGMSEKLQ-KRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVT 134
TT T DFL ++ +S ++IV +LD+GIW ES SF D G P +WKG C
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 135 GANFTR--CNKKVIGARYYN---LDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGAS 189
G F CN+K+IGA Y+N L N N S DTDGHGTH +S AG KG S
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 190 LYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGPSRSY 249
+G A GTARG P AR+A+YK ++ G D++AA D A+ DGVD+ISIS G
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFIPL 180
Query: 250 FDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGN 309
++D+ISI SF AM KG+L + SAGN GP G++ N +PWI+ VA+ DR F + LGN
Sbjct: 181 YEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGN 240
Query: 310 GMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLG 369
G++ G S+ P+ ++ + + ++ + IV C
Sbjct: 241 GLKIRGWSLFPARAFVRDSPVIYNKTLSDCS---------SEELLSQVENPENTIVICDD 291
Query: 370 SGS---QDYTIDRLQGAGTIVAVDAP-TDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQ 425
+G Q I R + I + P + G V + G ++ Y+ ++ P
Sbjct: 292 NGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPT 351
Query: 426 AVIYKTR-VVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPG 484
A I ++T AP +A+ S+RGP + L I KPDI APG+ ILAAY T +
Sbjct: 352 ATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGT 411
Query: 485 D-RRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMK-------- 535
+ + + SGTSMA PHAA AA +K+ HP+WSP+AI+SA+MTTA P+
Sbjct: 412 NILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKD 471
Query: 536 --TKSDDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKL 593
L G+G ++P +A+ PGL+YD Y LC + +
Sbjct: 472 SDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASH 531
Query: 594 NCSTIRPAQGLDGLNYPSMHFHFT---NESSISAIFRRTVTNVGFAKSLYKATVHSPKGL 650
NCS A LNYPS ++ N + + F+RTVTNVG + YKA + +PK
Sbjct: 532 NCS-NPSAD----LNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNS 586
Query: 651 SVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEW--SDTKHSVKSPILVY 705
+++VSP++L F + +S+T+ ++ G S + W + HSV+SPI+
Sbjct: 587 TISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTS 643
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 427 bits (1099), Expect = e-138
Identities = 120/614 (19%), Positives = 197/614 (32%), Gaps = 82/614 (13%)
Query: 87 EKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTR------ 140
+ LQ+++ K +V ++D G ++ + K
Sbjct: 7 KTLQEKAGKGA-GTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEW 65
Query: 141 CNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARG 200
N KV Y+ HGTH S +G A G
Sbjct: 66 VNDKVAYYHDYS---------KDGKTAVDQEHGTHVSGILSG----NAPSETKEPYRLEG 112
Query: 201 GVPSARIAMYKVCWSGGCADM--DILAAFDDAIGDGVDLISISIGGPSRSY--FDDSISI 256
+P A++ + +V G AD + A DAI G +I++S G + +Y D
Sbjct: 113 AMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKK 172
Query: 257 GSFHAMKKGILTACSAGNDGPYQGTVE---NVAPWIMTVAASSIDRKFVT-AVKLGNGMR 312
+A KG+ SAGND + G P V + +T A +
Sbjct: 173 AFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQL 232
Query: 313 TSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCL-GSG 371
T + + T + P+ + R A Y K VKGKI G
Sbjct: 233 TETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYAN-RGTKEDDFKDVKGKIALIERGDI 291
Query: 372 SQDYTIDRLQ---GAGTIVAVDA----PTDIAIATLIAGTFVVPEVGIKIDQYINSTKNP 424
I + + G ++ + P ++ + F+ + G+ + T
Sbjct: 292 DFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKTITF 351
Query: 425 QAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPG 484
A +V+ T++ ++ FSS G +KPDIAAPG DIL++
Sbjct: 352 NA---TPKVLPTASGTKLSRFSSWGL--TADGNIKPDIAAPGQDILSSV---------AN 397
Query: 485 DRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAA--------IKSALMTTATPMKT 536
++ + LSGTSM+ P A ++ + P K LM++AT +
Sbjct: 398 NK----YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALY- 452
Query: 537 KSDDAELAS----GSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKK 592
D+ S G+G ++ KA + + T S +
Sbjct: 453 DEDEKAYFSPRQQGAGAVDAKKASAATMY--VTDKDNTSSKVHLNNVSDKFEVTVNVH-- 508
Query: 593 LNCSTIRPAQGLDGLNYPSMHFHFTNESSISAIFRRTVTNVGFAKSLYKATVHSPKGLSV 652
N S L Y + V + S K T+ + V
Sbjct: 509 -NKSDKPQE-----LYYQ----ATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQV 558
Query: 653 TVSPRVLTFSRSQQ 666
TV FS+
Sbjct: 559 TVPIDASRFSKDLL 572
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 3e-33
Identities = 81/487 (16%), Positives = 139/487 (28%), Gaps = 111/487 (22%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
N + ++D+G VTG N
Sbjct: 22 GNRTICIIDSGYDRSHNDL------------NANNVTGTNN------------------- 50
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
+ P + + HGTH + T A + G+ +A I + KV G
Sbjct: 51 SGTGNWYQPGNNNAHGTHVAGTIAAIA-NNEGVVGVMPN------QNANIHIVKVFNEAG 103
Query: 218 CADM-DILAAFDDAIGD-GVDLISISIGGPSRS-YFDDSISIGSFHAMKKGILTACSAGN 274
++AA D + G +++++S+GG + ++++ G+L +AGN
Sbjct: 104 WGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALN----THYNNGVLLIAAAGN 159
Query: 275 DGPYQGTVENVAPWIMTVAASSIDRKF-----------VTA--------VKLGNGMRTSG 315
G + +M+VAA + ++ V +G G
Sbjct: 160 AGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADI 219
Query: 316 ISINT------FSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLG 369
P + P A + A G + C S CL
Sbjct: 220 TIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLV 279
Query: 370 SGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIY 429
+ + T A I + N
Sbjct: 280 ERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSAL----------PGLQNPFLVDANSDI 329
Query: 430 KTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIV 489
V+ A +A + G ++ G
Sbjct: 330 TVPSVSVDRATGLALKAKLGQS--------TTVSNQGNQ--------------------- 360
Query: 490 PFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQ 549
+ +GTSMA PH + A V S+HP+ S + +++AL TA + D + +G G
Sbjct: 361 DYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRDNQ--TGYGM 418
Query: 550 INPTKAV 556
IN A
Sbjct: 419 INAVAAK 425
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-24
Identities = 47/129 (36%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
I FSSRGP N LKP++ APG I+AA + S+ D + GT+MA
Sbjct: 309 ITDFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMAT 362
Query: 502 PHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAVHPGLI 561
PH A AA + HP W+P +K+AL+ TA +K + A++A G+G++N KA +
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETADIVKP-DEIADIAYGAGRVNAYKAAYYDNY 421
Query: 562 YDLNLSSYT 570
L + Y
Sbjct: 422 AKLTFTGYV 430
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 4e-20
Identities = 54/209 (25%), Positives = 84/209 (40%), Gaps = 49/209 (23%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S I +G++DTGI P +GK + +F
Sbjct: 139 SGITIGIIDTGIDASHPDL------------QGKVIGWVDFV------------------ 168
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLY-GIAQGTARGGVPSARIAMYKVC-WS 215
+ +P D +GHGTH +S AAG Y G+A P A++ KV
Sbjct: 169 ---NGKTTPYDDNGHGTHVASIAAGTGAASNGKYKGMA--------PGAKLVGIKVLNGQ 217
Query: 216 GGCADMDILA----AFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACS 271
G + DI+ A + G+ +I++S+G S DS+S +A G++ +
Sbjct: 218 GSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVA 277
Query: 272 AGNDGPYQGTVEN--VAPWIMTVAASSID 298
AGN GP + TV + A ++TV A
Sbjct: 278 AGNSGPNKYTVGSPAAASKVITVGAVDKY 306
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 5e-24
Identities = 40/115 (34%), Positives = 53/115 (46%), Gaps = 26/115 (22%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
ASFS G DI APG+++ + Y PG + L+GTSMA
Sbjct: 180 RASFSQYGAG--------LDIVAPGVNVQSTY---------PGST----YASLNGTSMAT 218
Query: 502 PHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556
PH A AAA VK +P WS I++ L TAT + + + GSG +N A
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNL-----YGSGLVNAEAAT 268
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 155 NALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVC- 213
+ + D +GHGTH + T A + G+A PSA + KV
Sbjct: 48 SFVPGEPS---TQDGNGHGTHVAGTIAA-LNNSIGVLGVA--------PSAELYAVKVLG 95
Query: 214 WSGGCADMDILAAFDDAIGDGVDLISISIGGPSRS-YFDDSISIGSFHAMKKGILTACSA 272
SG + I + A +G+ + ++S+G PS S + +++ A +G+L ++
Sbjct: 96 ASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAAS 151
Query: 273 GNDGPYQGTVENVAPWIMTVAASSIDRK 300
GN G + M V A+ +
Sbjct: 152 GNSGAGSISYPARYANAMAVGATDQNNN 179
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 26/115 (22%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
ASFSS GP + D+ APG+ I + PG++ + +GTSMA
Sbjct: 186 RASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMAS 224
Query: 502 PHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556
PH A AAA + S HP+W+ ++S+L T T + G G IN A
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF-----YYGKGLINVQAAA 274
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 7e-18
Identities = 45/204 (22%), Positives = 76/204 (37%), Gaps = 53/204 (25%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
SN+ V ++D+GI P G GA+
Sbjct: 24 SNVKVAVIDSGIDSSHPDLKVAG--------------GASMV------------------ 51
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
++ D + HGTH + T A + G+A PSA + KV + G
Sbjct: 52 --PSETNPFQDNNSHGTHVAGTVAA-LNNSIGVLGVA--------PSASLYAVKVLGADG 100
Query: 218 CADM-DILAAFDDAIGDGVDLISISIGGPSRS-YFDDSISIGSFHAMKKGILTACSAGND 275
I+ + AI + +D+I++S+GGPS S ++ A+ G++ +AGN+
Sbjct: 101 SGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVD----KAVASGVVVVAAAGNE 156
Query: 276 GPYQGTVENV----APWIMTVAAS 295
G + P ++ V A
Sbjct: 157 GTSGSSSTVGYPGKYPSVIAVGAV 180
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 26/115 (22%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
ASFSS G + ++ APG + + Y P + + L+GTSMA
Sbjct: 185 RASFSSVGA--------ELEVMAPGAGVYSTY---------PTNT----YATLNGTSMAS 223
Query: 502 PHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556
PH A AAA + S HP+ S + +++ L +TAT + + G G IN A
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSF-----YYGKGLINVEAAA 273
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 3e-18
Identities = 48/204 (23%), Positives = 76/204 (37%), Gaps = 54/204 (26%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
+N+ V +LDTGI P N V GA+F
Sbjct: 24 ANVKVAVLDTGIQASHPDLNV--------------VGGASFV------------------ 51
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
+ D +GHGTH + T A + G+A PS + KV S G
Sbjct: 52 ---AGEAYNTDGNGHGTHVAGTVAA-LDNTTGVLGVA--------PSVSLYAVKVLNSSG 99
Query: 218 CADM-DILAAFDDAIGDGVDLISISIGGPSRS-YFDDSISIGSFHAMKKGILTACSAGND 275
I++ + A +G+D+I++S+GG S S ++ +A +G++ +AGN
Sbjct: 100 SGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVD----NAYARGVVVVAAAGNS 155
Query: 276 GPYQGTVENV----APWIMTVAAS 295
G T ++ V A
Sbjct: 156 GNSGSTNTIGYPAKYDSVIAVGAV 179
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 22/126 (17%)
Query: 435 NTSTAPFIASFSSRGP----QKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVP 490
+ +A +SSRG + +I+APG + + +
Sbjct: 196 QQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW---------YNGG---- 242
Query: 491 FNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAE-----LAS 545
+N +SGTSMA PH + AA + + +P S ++S L A + K AS
Sbjct: 243 YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYAS 302
Query: 546 GSGQIN 551
G G
Sbjct: 303 GFGFAR 308
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 6e-18
Identities = 53/211 (25%), Positives = 76/211 (36%), Gaps = 51/211 (24%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S I + +LDTG+ P +FT
Sbjct: 26 SGINIAVLDTGVNTSHPDL------------VNNVEQCKDFT--------------GATT 59
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVK-GASLYGIAQGTARGGVPSARIAMYKVC-WS 215
N D +GHGTH + TA + A +YG+A P A + YKV S
Sbjct: 60 PINNS---CTDRNGHGTHVAGTALADGGSDQAGIYGVA--------PDADLWAYKVLLDS 108
Query: 216 GGCADMDILAAFDDAIGDGV-----DLISISIGGPSRS-YFDDSISIGSFHAMKKGILTA 269
G DI AA A +IS+S+G + + +++ +A KG+L
Sbjct: 109 GSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVN----YAYSKGVLIV 164
Query: 270 CSAGNDGPYQGTVEN--VAPWIMTVAASSID 298
+AGN G QGT+ P + VAA
Sbjct: 165 AAAGNSGYSQGTIGYPGALPNAIAVAALENV 195
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-22
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 22/136 (16%)
Query: 442 IASFSSRGPQKITLN-ILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMA 500
+ +++SR P ++ + APG I + + +++GTSMA
Sbjct: 419 VYTWTSRDP---CIDGGQGVTVCAPGGAIASVPQ-----FTMSK------SQLMNGTSMA 464
Query: 501 CPHAAAAAA----YVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556
PH A A A +K + ++SP +IK A+ TAT + A+ G G +N KA
Sbjct: 465 APHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVDPFAQ---GHGLLNVEKAF 521
Query: 557 HPGLIYDLNLSSYTRF 572
+ + + RF
Sbjct: 522 EHLTEHRQSKDNMLRF 537
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 91.0 bits (225), Expect = 6e-19
Identities = 42/200 (21%), Positives = 72/200 (36%), Gaps = 28/200 (14%)
Query: 155 NALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVC- 213
N D + + HGTH SS A+G + G+A P+A+I +
Sbjct: 255 NVHDEGNVLEVVGMSSPHGTHVSSIASG-NHSSRDVDGVA--------PNAKIVSMTIGD 305
Query: 214 --WSGGCADMDILAAFDDAI-----GDGVDLISISIGGPSRSYFDDSISIGSFHAM-KKG 265
++ A + G +D+I++S G + I + K G
Sbjct: 306 GRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKYG 365
Query: 266 ILTACSAGNDGPYQGTVENVA----PWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTF 321
++ SAGN GP TV P ++ V A + + + G ++ T+
Sbjct: 366 VVWVASAGNHGPALCTVGTPPDISQPSLIGVGAY--VSPQMMEAEYAMREKLPG-NVYTW 422
Query: 322 SPRKAMYPLTNGARAANVTA 341
+ R P +G + V A
Sbjct: 423 TSR---DPCIDGGQGVTVCA 439
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 2e-21
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 28/120 (23%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
++ F++ + DI APG+ I + Y + LSGT+MA
Sbjct: 215 LSDFTNTNEE--------IDIVAPGVGIKSTY---------LDSG----YAELSGTAMAA 253
Query: 502 PHAAAAAAYVKSFHPD-----WSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556
PH A A A + + D S I + L+ ATP+ + +G ++ + +
Sbjct: 254 PHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAE--GNGFLTLDLVERI 311
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 8e-18
Identities = 48/216 (22%), Positives = 84/216 (38%), Gaps = 55/216 (25%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
+ I+G++DTG V+ P + + G N T
Sbjct: 41 AGQIIGVIDTGCQVDHPDL------------AERIIGGVNLTT----------------- 71
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
D D+ + D +GHGTH + T A G+ + G+A P A + + K G
Sbjct: 72 DYGGDETNFSDNNGHGTHVAGTVAA-AETGSGVVGVA--------PKADLFIIKALSGDG 122
Query: 218 CADM-DILAAFDDAI------GDGVDLISISIGGPSRS-YFDDSISIGSFHAMKKGILTA 269
+M I A A+ G+ + +I++S+GGP+ S D++ +A+ +
Sbjct: 123 SGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVV 178
Query: 270 CSAGNDGPYQGTVENV-----APWIMTVAASSIDRK 300
C+AGN+G + ++ V A D +
Sbjct: 179 CAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLR 214
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 3e-21
Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 21/119 (17%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
FS+ G K I APG +IL A P L+GTSMA
Sbjct: 253 PCHFSNWGGNNT-----KEGILAPGEEILGAQ---------PCTEE---PVRLTGTSMAA 295
Query: 502 PHAAAAAAYVKSFH----PDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556
P +A + S A+++AL+ TA P + + G +N A+
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVVEEPERCLRGFVNIPGAM 354
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 1e-18
Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 29/222 (13%)
Query: 94 SKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKG-KCVTGANFTRCNKKVI--GARY 150
+ I + ++D F W + + G +
Sbjct: 45 TLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKG 104
Query: 151 YNLDNALDPNT-DQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAM 209
+ AL+ D K + + H H +ST G+ ++GIA P+ R+
Sbjct: 105 KEKEEALEAVIPDTKDRIVLNDHACHVTSTIVGQEHSP--VFGIA--------PNCRVIN 154
Query: 210 YKVC------WSGGCADMDILAAFDDAIGDGVDLISISIGGPSRSY-----FDDSISIGS 258
+ + +++ A D A+ G ++I + P+++ +I
Sbjct: 155 MPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIK--- 211
Query: 259 FHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRK 300
+L GN+ + V P + V A+ +D
Sbjct: 212 -KCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGT 252
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 4e-21
Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 23/131 (17%)
Query: 426 AVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGD 485
A+ + + S G + DIAAPG +I P
Sbjct: 220 ALAQYRKGETPVLHGGGITGSRFGNNWV-------DIAAPGQNITFLR---------PDA 263
Query: 486 RRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELAS 545
+ SGTS A + A + S +P + +K L+ +A + D +
Sbjct: 264 K----TGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDK---VT 316
Query: 546 GSGQINPTKAV 556
+N KA+
Sbjct: 317 EGRVLNAEKAI 327
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 35/238 (14%), Positives = 65/238 (27%), Gaps = 64/238 (26%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
+ ++V ++D+G+ +F +FT+
Sbjct: 44 TPVVVSVVDSGV-----AFI------GGL--SDSEFAKFSFTQDGS-------------- 76
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
K HGT +S A GI G P A I+ +V G
Sbjct: 77 --PFPVKKSEALYIHGTAMASLIASRY-------GIY-----GVYPHALISSRRVIPDGV 122
Query: 218 ----CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAG 273
++ + + +I+IS G + + S L + G
Sbjct: 123 QDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVG 182
Query: 274 NDG-----------------PYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTS 314
NDG +V ++ VAA + + + +G +
Sbjct: 183 NDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAA--LAQYRKGETPVLHGGGIT 238
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 96.3 bits (239), Expect = 8e-21
Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 15/120 (12%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVP-----FNILSG 496
+A FSSR + APG+ IL+ S+ + + ++ G
Sbjct: 328 VAGFSSRSDG--------VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQG 379
Query: 497 TSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556
TSMA PH A + P+ P I+ L TA D + +G G + A+
Sbjct: 380 TSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWDHD--TGYGLVKLDAAL 437
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 8e-14
Identities = 46/208 (22%), Positives = 74/208 (35%), Gaps = 52/208 (25%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
+NIIV ++DTG+ P +G+ + G D L
Sbjct: 154 TNIIVAVVDTGVDGTHPDL------------EGQVIAGYRPAF-------------DEEL 188
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVC---- 213
TD GTH + T A + G + G+A P A+I +
Sbjct: 189 PAGTD---SSYGGSAGTHVAGTIAAKK-DGKGIVGVA--------PGAKIMPIVIFDDPA 236
Query: 214 ---WSGGCADMDILAAFDDAIGDGVDLISISIGGPSRS-YFDDSISIGSFHAMKKGILTA 269
+G D + A A G +++ S GG S ++ +AM+ G++
Sbjct: 237 LVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFD----YAMEHGVVMV 292
Query: 270 CSAGNDGPYQGTVENVA--PWIMTVAAS 295
SAGN+ + A P ++ VAA
Sbjct: 293 VSAGNNTS-DSHHQYPAGYPGVIQVAAL 319
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 1e-19
Identities = 43/225 (19%), Positives = 71/225 (31%), Gaps = 44/225 (19%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
IV + DTG+ + ++GK R N
Sbjct: 22 QGQIVAVADTGLDTGRNDSSM------HEAFRGKITALYALGRTN--------------- 60
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVC-WSG 216
+ DT+GHGTH + + G G++ G+A P A + + G
Sbjct: 61 -------NANDTNGHGTHVAGSVLG---NGSTNKGMA--------PQANLVFQSIMDSGG 102
Query: 217 GCADM--DILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGN 274
G + ++ F A G + + S G + + K + +AGN
Sbjct: 103 GLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGN 162
Query: 275 DGPYQGTVEN--VAPWIMTVAASSIDRKFVTAVKLGNGMRTSGIS 317
+GP GT+ A +TV A+ R + S
Sbjct: 163 EGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHVAQFSS 207
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 87.3 bits (216), Expect = 2e-18
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
+A FSSRGP +KPD+ APG IL+A S LA + + + GTSMA
Sbjct: 202 VAQFSSRGPT--KDGRIKPDVMAPGTFILSARSSLAPDSS-FWANHDSKYAYMGGTSMAT 258
Query: 502 PHAAAAAAYVKSFHPDW-----SPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556
P A A ++ P+ +K+AL+ A + + G G++ K++
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYPNGN--QGWGRVTLDKSL 316
Query: 557 HPGLIYD 563
+ + +
Sbjct: 317 NVAYVNE 323
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 2e-19
Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 20/125 (16%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVP---------FN 492
++ FS+ G DIAAPG G +
Sbjct: 349 LSEFSNFGMNYT-------DIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYI 401
Query: 493 ILSGTSMACPHAAAAAAYVKS-FHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQIN 551
+GT++A P + A A + +H + P L T K G G+++
Sbjct: 402 YQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFS---RYGHGELD 458
Query: 552 PTKAV 556
KA+
Sbjct: 459 VYKAL 463
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 3e-16
Identities = 39/229 (17%), Positives = 71/229 (31%), Gaps = 62/229 (27%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
+N + ++DTG+ + NF+ +K ++ +
Sbjct: 146 ANTKIAIIDTGVMKNHDDLKN------------------NFSTDSKNLVPLNGFR-GTEP 186
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
+ D D GHGT S + + G P+ + MY+V S
Sbjct: 187 EETGDVHDVNDRKGHGTMVSGQTSANG-------KLI-----GVAPNNKFTMYRVFGSKK 234
Query: 218 CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFH-------------AMKK 264
+ + A A DG +I+IS+G +D + A KK
Sbjct: 235 TELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKK 294
Query: 265 GILTACSAGNDGPYQGTVENVA------------------PWIMTVAAS 295
+ +AGNDG + + ++TV ++
Sbjct: 295 KSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGST 343
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 5e-19
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 27/115 (23%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
+SFS+ G D+AAPG I + Y P + LSGTSMA
Sbjct: 190 KSSFSTYGSWV--------DVAAPGSSIYSTY---------PTST----YASLSGTSMAT 228
Query: 502 PHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556
PH A A + S S + I++A+ TA + G++N KAV
Sbjct: 229 PHVAGVAGLLAS--QGRSASNIRAAIENTADKISGTGTY----WAKGRVNAYKAV 277
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 7e-19
Identities = 45/209 (21%), Positives = 72/209 (34%), Gaps = 55/209 (26%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S + ++DTG+ P GK V G +F
Sbjct: 30 SGAKIAIVDTGVQSNHPDL------------AGKVVGGWDFV------------------ 59
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVC-WSG 216
+ +P + +GHGTH + AA T + G A P A I +V SG
Sbjct: 60 ---DNDSTPQNGNGHGTHCAGIAAAVTNNSTGIAGTA--------PKASILAVRVLDNSG 108
Query: 217 GCADMDILAAFDDAIGDGVDLISISIGGPSRS-YFDDSISIGSFHAMKKGILTACSAGND 275
+ A G +IS+S+GG + +++ +A KG + +AGN
Sbjct: 109 SGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVN----YAWNKGSVVVAAAGNA 164
Query: 276 GP----YQGTVENVAPWIMTVAASSIDRK 300
G Y N + VA++ +
Sbjct: 165 GNTAPNYPAYYSNA----IAVASTDQNDN 189
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 9e-19
Identities = 45/209 (21%), Positives = 79/209 (37%), Gaps = 47/209 (22%)
Query: 94 SKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNL 153
+K S + ++DTG+ P GK + G +F
Sbjct: 27 TKGSSGQEIAVIDTGVDYTHPDL------------DGKVIKGYDFV-------------- 60
Query: 154 DNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVC 213
D + D P+D + HGTH + AA ET + G+A P+ RI +
Sbjct: 61 ----DNDYD---PMDLNNHGTHVAGIAAAETNNATGIAGMA--------PNTRILAVRAL 105
Query: 214 WSGGCADM-DILAAFDDAIGDGVDLISISIGGPSRS-YFDDSISIGSFHAMKKGILTACS 271
G + DI A A G ++I++S+G + +++++ +A KG + +
Sbjct: 106 DRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVN----YAWNKGSVVVAA 161
Query: 272 AGNDGPYQGTVENVAPWIMTVAASSIDRK 300
AGN+G ++ V A +
Sbjct: 162 AGNNGSSTTFEPASYENVIAVGAVDQYDR 190
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 27/115 (23%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
+ASFS+ G D+ APG+DI++ G+R + +SGTSMA
Sbjct: 191 LASFSNYGTW--------VDVVAPGVDIVSTI---------TGNR----YAYMSGTSMAS 229
Query: 502 PHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556
PH A AA + S + I+ A+ TA + G+IN AV
Sbjct: 230 PHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGTGTY----FKYGRINSYNAV 278
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 1e-18
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 38/128 (29%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
IASFS+R P +++APG+DIL+ Y P D + L GT+MA
Sbjct: 213 IASFSNRQP----------EVSAPGVDILSTY---------PDDS----YETLMGTAMAT 249
Query: 502 PHAAAAAAYVKSFH-------------PDWSPAAIKSALMTTATPMKTKSDDAELASGSG 548
PH + A +++ + D S ++ L TA + DA+ G G
Sbjct: 250 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDAD--YGYG 307
Query: 549 QINPTKAV 556
+ AV
Sbjct: 308 VVRAALAV 315
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 5e-14
Identities = 45/225 (20%), Positives = 71/225 (31%), Gaps = 63/225 (28%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S I V +LDTG+ + P +
Sbjct: 29 SVIQVAVLDTGVDYDHPDL------------AANIAWCVSTL----------------RG 60
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
+T + D +GHGTH T A + G+A P +I +V + G
Sbjct: 61 KVSTKLRDCADQNGHGTHVIGTIAA-LNNDIGVVGVA--------PGVQIYSVRVLDARG 111
Query: 218 CADM-DILAAFDDAIGD--------------------GVDLISISIGGPSRS-YFDDSIS 255
DI + AI ++IS+S+GGP+ Y D I
Sbjct: 112 SGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMII 171
Query: 256 IGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRK 300
A GI+ ++GN+G + P ++ V A +
Sbjct: 172 ----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDN 212
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 4e-18
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 38/128 (29%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
IASFS+R P +++APG+DIL+ Y P D + L GT+MA
Sbjct: 288 IASFSNRQP----------EVSAPGVDILSTY---------PDDS----YETLMGTAMAT 324
Query: 502 PHAAAAAAYVKSFH-------------PDWSPAAIKSALMTTATPMKTKSDDAELASGSG 548
PH + A +++ + D S ++ L TA + DA+ G G
Sbjct: 325 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDAD--YGYG 382
Query: 549 QINPTKAV 556
+ AV
Sbjct: 383 VVRAALAV 390
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 7e-18
Identities = 55/304 (18%), Positives = 92/304 (30%), Gaps = 78/304 (25%)
Query: 34 KIRSYGKSFNGFVARLLPHEAKRLSEEESVVSVFENTRRKLHTTRTWDFLGMSEKLQ--- 90
I K V + + +L + V V + + L +W G ++ Q
Sbjct: 25 HIVYQFKLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIP 84
Query: 91 ------------KRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANF 138
+ + S I V +LDTG+ + P +
Sbjct: 85 WGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDL------------AANIAWCVST 132
Query: 139 TRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTA 198
+T + D +GHGTH T A + G+A
Sbjct: 133 L----------------RGKVSTKLRDCADQNGHGTHVIGTIAA-LNNDIGVVGVA---- 171
Query: 199 RGGVPSARIAMYKVCWSGGCADM-DILAAFDDAIGD--------------------GVDL 237
P +I +V + G DI + AI ++
Sbjct: 172 ----PGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEV 227
Query: 238 ISISIGGPSRS-YFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASS 296
IS+S+GGP+ Y D I A GI+ ++GN+G + P ++ V A
Sbjct: 228 ISMSLGGPADDSYLYDMII----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAID 283
Query: 297 IDRK 300
+
Sbjct: 284 SNDN 287
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 6e-18
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 21/119 (17%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
ASFS+ G D+AAPG DIL+ ++ ++GTSMA
Sbjct: 234 RASFSNYGVD--------VDLAAPGQDILSTVDSGTRRPVSDA------YSFMAGTSMAT 279
Query: 502 PHAAAAAAYVKS----FHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556
PH + AA V S + + +PA +K L++T +P + D A GSG ++ AV
Sbjct: 280 PHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDR---ALGSGIVDAEAAV 335
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 40/217 (18%), Positives = 71/217 (32%), Gaps = 33/217 (15%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
N++V ++DTGI N P ++ R +++
Sbjct: 32 QNVVVAVVDTGIL-HHRDLNAN-VLPGYDFISNSQISLDGDGRDADPFDEGDWFDNWACG 89
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
+K D+ HG+H + T A T + G+A A++ + G
Sbjct: 90 GRPDPRKERSDSSWHGSHVAGTIAAVTNNRIGVAGVA--------YGAKVVPVRALGRCG 141
Query: 218 CADMDILAAFDDAIGD----------GVDLISISIGGPSRS--YFDDSISIGSFHAMKKG 265
D DI A G +I++S+G + I A + G
Sbjct: 142 GYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMID----RATRLG 197
Query: 266 ILTACSAGNDGPYQGTVENVAP----WIMTVAASSID 298
L +AGN+ N P +++V A++
Sbjct: 198 ALVVVAAGNEN---QNASNTWPTSCNNVLSVGATTSR 231
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 19/92 (20%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
+SFS+ G DI APG I +++ S T N +SGTSMA
Sbjct: 187 RSSFSNYGT--------CLDIYAPGSSITSSWYTSNSAT-----------NTISGTSMAS 227
Query: 502 PHAAAAAAYVKSFHPDWSPAAIKSALMTTATP 533
PH A AA +P+ SPA + + L T AT
Sbjct: 228 PHVAGVAALYLDENPNLSPAQVTNLLKTRATA 259
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 5e-12
Identities = 39/208 (18%), Positives = 72/208 (34%), Gaps = 61/208 (29%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S + ++DTG+ F G+ +G +F
Sbjct: 31 SGVTAFVIDTGVLNTHNEFG------------GRASSGYDFI------------------ 60
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
+ D +GHGTH + T G T YG+A + + +V G
Sbjct: 61 ---DNDYDATDCNGHGTHVAGTIGGST------YGVA--------KNVNVVGVRVLNCSG 103
Query: 218 CADM-DILAAFDDAIGDGV--DLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGN 274
++A + + + ++S+GG + DD+++ A+ GI +AGN
Sbjct: 104 SGSNSGVIAGINWVKNNASGPAVANMSLGGGASQATDDAVN----AAVAAGITFVVAAGN 159
Query: 275 DGPYQGTVENV----APWIMTVAASSID 298
D N A +TV +++ +
Sbjct: 160 DN---SNACNYSPARAADAITVGSTTSN 184
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 21/92 (22%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
+SFS+ G D+ APG I +A+ + T +SGTSMA
Sbjct: 185 RSSFSNWGS--------CVDLFAPGSQIKSAWYDGGYKT-------------ISGTSMAT 223
Query: 502 PHAAAAAAYVKSFHPDWSPAAIKSALMTTATP 533
PH A AA + +P + L + A+
Sbjct: 224 PHVAGVAALYLQENNGLTPLQLTGLLNSRASE 255
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 5e-12
Identities = 36/212 (16%), Positives = 69/212 (32%), Gaps = 61/212 (28%)
Query: 94 SKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNL 153
+ + ++DTG+ F G+ V+G +F
Sbjct: 25 NFDGFGVTAYVIDTGVNNNHEEFG------------GRSVSGYDFV-------------- 58
Query: 154 DNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVC 213
+ D +GHGTH + T G YG+A + I +V
Sbjct: 59 -------DNDADSSDCNGHGTHVAGTIGGSQ------YGVA--------KNVNIVGVRVL 97
Query: 214 WSGGCADM-DILAAFDDAIGDGV--DLISISIGGPSRSYFDDSISIGSFHAMKKGILTAC 270
G +++ D + + ++S+GG + D ++ A++ G+
Sbjct: 98 SCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQSTALDSAVQ----GAIQSGVSFML 153
Query: 271 SAGNDGPYQGTVENV----APWIMTVAASSID 298
+AGN N P +TV +++
Sbjct: 154 AAGNSN---ADACNTSPARVPSGVTVGSTTSS 182
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 8e-16
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 19/92 (20%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
ASFS+ G D+ APG I +A+ + T L+GTSMA
Sbjct: 185 RASFSNYGS--------CVDLFAPGASIPSAWYTSDTAT-----------QTLNGTSMAT 225
Query: 502 PHAAAAAAYVKSFHPDWSPAAIKSALMTTATP 533
PH A AA +P +PA++ SA++ AT
Sbjct: 226 PHVAGVAALYLEQNPSATPASVASAILNGATT 257
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 7e-11
Identities = 38/208 (18%), Positives = 71/208 (34%), Gaps = 63/208 (30%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
+ V ++DTGI F + A+ G +
Sbjct: 31 RGVNVYVIDTGIRTTHREFGGR------ARV------GYDAL------------------ 60
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
+ D +GHGTH + T G T YG+A + + +V G
Sbjct: 61 -----GGNGQDCNGHGTHVAGTIGGVT------YGVA--------KAVNLYAVRVLDCNG 101
Query: 218 CADM-DILAAFDDAIGDGVD--LISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGN 274
++A D + + ++S+GG + D+++ +++ G++ A +AGN
Sbjct: 102 SGSTSGVIAGVDWVTRNHRRPAVANMSLGGGVSTALDNAVK----NSIAAGVVYAVAAGN 157
Query: 275 DGPYQGTVENV----APWIMTVAASSID 298
D N +TV A++
Sbjct: 158 DN---ANACNYSPARVAEALTVGATTSS 182
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 3e-15
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 19/95 (20%)
Query: 439 APFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTS 498
++ G D+ APG DI+ A S+ ++ SGTS
Sbjct: 194 VTLGTLGTNFGR--------CVDLFAPGEDIIGASSDCSTCF-----------VSQSGTS 234
Query: 499 MACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATP 533
A H A AA + S P+ + A ++ L+ +
Sbjct: 235 QAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAK 269
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 31/212 (14%), Positives = 57/212 (26%), Gaps = 58/212 (27%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S + V LLDT I + + +
Sbjct: 26 SLVEVYLLDTSIQSDHREIEGR------VMV--------------------TDFENVPEE 59
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
D + D HGTH + +G G+A A + +V G
Sbjct: 60 DGTRFHRQASKCDSHGTHLAGVVSGRD------AGVA--------KGASMRSLRVLNCQG 105
Query: 218 CADM-DILAAFDDAIGD------GVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTAC 270
+ L + G ++ + + G + + + G++
Sbjct: 106 KGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQ----RLARAGVVLVT 161
Query: 271 SAGNDGPYQGTVENV----APWIMTVAASSID 298
+AGN AP ++TV A++
Sbjct: 162 AAGNFRD---DACLYSPASAPEVITVGATNAQ 190
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 6e-15
Identities = 40/311 (12%), Positives = 80/311 (25%), Gaps = 70/311 (22%)
Query: 6 EEAGISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSEEESVVS 65
EE +S + L + + GF+ ++ + + V
Sbjct: 84 EETHLSQSERTARRLQAQAARRGYLTKIL-HVFHGLLPGFLVKMSGDLLELALKLPHVDY 142
Query: 66 VFENTRRKLHTTRTWDFLGMSEKLQKRS-------SKAQSNIIVGLLDTGIWVESPSFND 118
+ E++ + W + R S + V LLDT I +
Sbjct: 143 IEEDSSVFAQSI-PW---NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEG 198
Query: 119 KGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHTSS 178
+ + D + D HGTH +
Sbjct: 199 R------VMV--------------------TDFENVPEEDGTRFHRQASKCDSHGTHLAG 232
Query: 179 TAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADM-DILAAFDDAIGDGVDL 237
+G G+A A + +V G + L + +
Sbjct: 233 VVSGRD------AGVA--------KGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQ 278
Query: 238 ------ISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENV----AP 287
+ + + G + + + G++ +AGN AP
Sbjct: 279 PVGPLVVLLPLAGGYSRVLNAACQ----RLARAGVVLVTAAGNFR---DDACLYSPASAP 331
Query: 288 WIMTVAASSID 298
++TV A++
Sbjct: 332 EVITVGATNAQ 342
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 3e-14
Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 22/171 (12%)
Query: 439 APFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTS 498
++ G D+ APG DI+ A S+ ++ SGTS
Sbjct: 346 VTLGTLGTNFGR--------CVDLFAPGEDIIGASSDCSTCF-----------VSQSGTS 386
Query: 499 MACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINP---TKA 555
A H A AA + S P+ + A ++ L+ + N
Sbjct: 387 QAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPP 446
Query: 556 VHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNCSTIRPAQGLDG 606
G + L + +TAI R ++ L+CS+ + G
Sbjct: 447 STHGAGWQLFCRTVWSAHSGPTRMATAIARCAPDEELLSCSSFSRSGKRRG 497
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 22/92 (23%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
++FS+ G DI APG I + + + T +SGTSMA
Sbjct: 190 RSTFSNYGR--------VVDIFAPGTSITSTWIGGRTNT-------------ISGTSMAT 228
Query: 502 PHAAAAAAYVKSFHPDWSPAAIKSALMTTATP 533
PH A AAY+ S A+ + T +T
Sbjct: 229 PHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTK 259
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 7e-10
Identities = 40/213 (18%), Positives = 66/213 (30%), Gaps = 69/213 (32%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
+ V ++DTG+ P F G+ ++
Sbjct: 32 AGACVYVIDTGVEDTHPDFE------------GRAKQIKSYA------------------ 61
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
+ D GHGTH + T +T +G+A I KV G
Sbjct: 62 ------STARDGHGHGTHCAGTIGSKT------WGVA--------KKVSIFGVKVLDDSG 101
Query: 218 CADM-DILAAFDDAIGDGVDL-------ISISIGGPSRSYFDDSISIGSFHAMKKGILTA 269
+ +I+A D D S+S+GG + + + + G+ A
Sbjct: 102 SGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQAAA----RLQSSGVFVA 157
Query: 270 CSAGNDGPYQGTVENV----APWIMTVAASSID 298
+AGND N P + TV A+ +
Sbjct: 158 VAAGNDN---RDAANTSPASEPTVCTVGATDSN 187
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 7e-13
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 22/92 (23%)
Query: 442 IASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMAC 501
+SFS+ G DI PG DIL+ + ++ + +SGTSMA
Sbjct: 189 RSSFSNYGS--------VLDIFGPGTDILSTWIGGSTRS-------------ISGTSMAT 227
Query: 502 PHAAAAAAYVKSFHPDWSPAAIKSALMTTATP 533
PH A AAY+ + + A+ + TA
Sbjct: 228 PHVAGLAAYLMTLGKT-TAASACRYIADTANK 258
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 1e-09
Identities = 34/143 (23%), Positives = 51/143 (35%), Gaps = 33/143 (23%)
Query: 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADM-DILAA 226
D +GHGTH + T T YG+A ++ KV G I+A
Sbjct: 65 DGNGHGTHCAGTVGSRT------YGVA--------KKTQLFGVKVLDDNGSGQYSTIIAG 110
Query: 227 FDDAIGDGVDL-------ISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ 279
D D + S+S+GG S + + + G++ A +AGN+
Sbjct: 111 MDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAA----RLQSSGVMVAVAAGNNN--- 163
Query: 280 GTVENV----APWIMTVAASSID 298
N P + TV AS
Sbjct: 164 ADARNYSPASEPSVCTVGASDRY 186
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 2e-07
Identities = 41/259 (15%), Positives = 71/259 (27%), Gaps = 57/259 (22%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
+ ++ ++D G+ E+ D W +
Sbjct: 54 AGVVAAIVDDGLDYENEDLKDNFC--AEGSW--------------------------DFN 85
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
D K + D HGT + A + G+ +A+I+ ++ SG
Sbjct: 86 DNTNLPKPRLSDDYHGTRCAGEIAAKKGNNFCGVGVG--------YNAKISGIRIL-SGD 136
Query: 218 CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMK---------KGILT 268
D A+ + D D+ S S G S A+ KG +
Sbjct: 137 ITTEDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIY 195
Query: 269 ACSAGNDGPYQGTVENVA----PWIMTVAASSIDRK------FVTAVKLGNGMRTSGISI 318
++GN G + +T+ A +AV SG I
Sbjct: 196 VFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHPPYSEGCSAVMAVTYSSGSGEYI 255
Query: 319 NTFSPRKAMYPLTNGARAA 337
++ G AA
Sbjct: 256 HSSDINGRCSNSHGGTSAA 274
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 492 NILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSG 548
N GTS A P AA + +P+ + ++ + +A ++ +D S G
Sbjct: 266 NSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMG 322
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 1e-06
Identities = 79/541 (14%), Positives = 138/541 (25%), Gaps = 179/541 (33%)
Query: 222 DILAAFDDAIGDGVDLISISIGGPSRSYFD----DSISIGSFHAMKK-----GILTACSA 272
DIL+ F+DA D D + +S D I I S A+ L S
Sbjct: 20 DILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDHI-IMSKDAVSGTLRLFWTL--LSK 74
Query: 273 GNDGPYQGTVENVA----PWIMT------VAASSIDRKFVTAV-KLGNGMRTSGISINTF 321
+ Q VE V ++M+ S + R ++ +L N + F
Sbjct: 75 QEEM-VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-------VF 126
Query: 322 SP------------RKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCL- 368
+ R+A+ L A NV I G +G+ GK +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELR---PAKNVL--IDGVLGS------------GK--TWVA 167
Query: 369 GSGSQDYTIDRLQGAG----TIVAVDAPTDI-----AIATLIAGTFVV-PEVGIKIDQYI 418
Y + + ++P + + I + + I I
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 419 NSTKN-----------PQAVI-----YKTRVVN-----------TSTAPFIASFSSRGPQ 451
+S + ++ + N T S+
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 452 KITLNILKPDIAAP-GLDILAAYSELASVTGLPGD-RRIVPFNILSGTSMACPHAAAAAA 509
I+L+ + +L Y + LP + P + S+ A
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPREVLTTNPRRL----SI-------IAE 335
Query: 510 YVKSFHPDWSP----------AAIKSAL--MTTAT-----------------PMKT---- 536
++ W I+S+L + A P
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 537 ----KSDDAE-----LASGS---GQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAI- 583
D L S Q + I + L L + N A+
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS----IPSIYLE-----LKVKLENEYALH 446
Query: 584 GRLIGR---KKKLNCSTIRPAQGLDG--LNYPSMHFHFTNESSISAIFRRTVTNVGF--A 636
++ K + + P LD ++ H +FR + F
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPY-LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 637 K 637
K
Sbjct: 506 K 506
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 2e-05
Identities = 44/299 (14%), Positives = 86/299 (28%), Gaps = 84/299 (28%)
Query: 5 PEEAGISAVKEHHSLLTTAIGDEKLARESKIRS----------YGKSFNGFVARLLPHEA 54
P E + + I E + R+ + L P E
Sbjct: 319 PREV-----LTTNPRRLSIIA-ESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 55 KRLSEEESVVSVF-ENTRRKLHT-TRTW------DFLGMSEKLQKRS--SKAQSNIIVGL 104
+++ + +SVF + + W D + + KL K S K + +
Sbjct: 372 RKMFDR---LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 105 LDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQK 164
I++E K K N ++ ++ +YN+ D +
Sbjct: 429 PS--IYLEL---------------KVKL---ENEYALHRSIV--DHYNIPKTFDSDD--L 464
Query: 165 SPVDTDG----H-GTHTSSTAAGETVKGAS-LYG---------IAQGTARGGVPS----- 204
P D H G H + E + ++ TA S
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 205 ARIAMYK--VCWSGGCADM---DIL-----AAFDDAIGDGVDLISISIGGPSRSYFDDS 253
++ YK +C + + IL + DL+ I++ + F+++
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 2e-05
Identities = 32/212 (15%), Positives = 67/212 (31%), Gaps = 48/212 (22%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
I+V +LD GI P D G GA+ +++++
Sbjct: 38 HGIVVSILDDGIEKNHP---D---------LAGNYDPGAS-------------FDVNDQD 72
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
+ + ++ + HGT + A G G+A +ARI + G
Sbjct: 73 PDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVA--------YNARIGGVR--MLDG 122
Query: 218 CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMK---------KGILT 268
+ A + + + S S G D + + A G +
Sbjct: 123 EVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIF 182
Query: 269 ACSAGNDGPYQGTVENVA----PWIMTVAASS 296
++GN G + + +++++++
Sbjct: 183 VWASGNGGREHDSCNCDGYTNSIYTLSISSAT 214
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 4e-05
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 495 SGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELAS--------- 545
+GTS + P AA A + + + ++ ++ T+ P +DD
Sbjct: 258 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSY 317
Query: 546 GSGQINPTKAVH 557
G G ++ V
Sbjct: 318 GYGLLDAGAMVA 329
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 8e-04
Identities = 31/141 (21%), Positives = 42/141 (29%), Gaps = 48/141 (34%)
Query: 225 AAFDDAIGDGVDLIS-----ISI-GGPSRSYFDDSISIGS--FHAMKKGILTACSAGNDG 276
A +++ GV+ I I I GG +DD GS F MK A S +
Sbjct: 1107 ATSVESVDIGVETILSGKARICIVGG-----YDDFQEEGSFEFGNMK-----ATSNTLEE 1156
Query: 277 PYQGTVENVA--PWIMTVAASSIDRK-FVTAVKLGNGMRTSGISINTFSPRKAMYPLTNG 333
G P + R F+ G +GI I +
Sbjct: 1157 FEHGRTPAEMSRPA-------TTTRNGFM----EAQG---AGIQI-----------IMQA 1191
Query: 334 ARAANVTAEIYGNVGACDYGT 354
A + IYG V T
Sbjct: 1192 DLALKMGVPIYGIVA--MAAT 1210
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 712 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.9 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.85 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.93 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.6 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.13 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.01 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 97.88 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 97.78 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 96.79 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 94.9 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 92.79 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 92.64 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 90.75 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 88.93 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 87.7 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 87.3 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 86.77 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 82.68 | |
| 2qsv_A | 220 | Uncharacterized protein; MCSG, structural genomics | 81.27 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-119 Score=1032.39 Aligned_cols=611 Identities=37% Similarity=0.609 Sum_probs=546.3
Q ss_pred cCCCccccccch-hhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCcccc--CCceeEEeEecc
Q 045363 76 TTRTWDFLGMSE-KLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTR--CNKKVIGARYYN 152 (712)
Q Consensus 76 ~~~s~~~~~~~~-~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~--~n~ki~g~~~~~ 152 (712)
|+++|+|+|++. ..+|..+.+|+||+|||||||||++||+|.+.+++++|.+|+|.|+.+.+|+. ||+|+++.++|
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f- 79 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYF- 79 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEEC-
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEec-
Confidence 578999999963 56999999999999999999999999999999999999999999999999987 99999999999
Q ss_pred CCCCC----CCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHH
Q 045363 153 LDNAL----DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFD 228 (712)
Q Consensus 153 ~~~~~----~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~ 228 (712)
.++++ ....+...++|..||||||||||||+.+++.+++|++.|.+.||||+|+|+++|+++..++..+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~Ai~ 159 (649)
T 3i6s_A 80 NKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMD 159 (649)
T ss_dssp CHHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTEECHHHHHHHHH
T ss_pred cCcccccccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCCCCHHHHHHHHH
Confidence 64432 11234467889999999999999999998888889999999999999999999999988899999999999
Q ss_pred HHHhCCCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeC
Q 045363 229 DAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLG 308 (712)
Q Consensus 229 ~a~~~g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~ 308 (712)
||+++|+||||||||....++..+++..++++|+++|++||+||||+|+...++++.+||+|+|||++.+|.|+..+.++
T Consensus 160 ~A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~lg 239 (649)
T 3i6s_A 160 QAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239 (649)
T ss_dssp HHHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEET
T ss_pred HHHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEeC
Confidence 99999999999999998667788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcc--cceEEEEecCCc-----hhHHhhccC
Q 045363 309 NGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKV--KGKIVYCLGSGS-----QDYTIDRLQ 381 (712)
Q Consensus 309 ~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gkivl~~~~~~-----~~~~~~~~G 381 (712)
+++++.|.+++........+|+++.. ....|.+..++..++ +||||+|.++.+ .. +++.+|
T Consensus 240 ng~~~~g~sl~~~~~~~~~~plv~~~-----------~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~-~~~~~G 307 (649)
T 3i6s_A 240 NGLKIRGWSLFPARAFVRDSPVIYNK-----------TLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRI-ITRARL 307 (649)
T ss_dssp TSCEEEEECCCSSCBCEEEEEEECCT-----------TTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHH-HHHHTC
T ss_pred CCcEEeeeecccCcccCcceeeEecc-----------cccccccccccccccccCCcEEEEeCCCccHHHHHH-HHHhcC
Confidence 99999999998876667789999875 246799988888877 999999999987 55 889999
Q ss_pred ceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeC-CCCCccccccCCCCCcCCCCcccC
Q 045363 382 GAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNT-STAPFIASFSSRGPQKITLNILKP 460 (712)
Q Consensus 382 a~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~-~~~~~~a~fSs~Gp~~~~~~~lKP 460 (712)
+.|+|++++........+.+|+++++.+++..|+.|++++.++++++.+..++.+ ...+.++.||||||+...+++|||
T Consensus 308 a~g~i~~n~~~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKP 387 (649)
T 3i6s_A 308 KAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKP 387 (649)
T ss_dssp SEEEEECCCGGGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSC
T ss_pred ceEEEEecCccccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCC
Confidence 9999999988444577889999999999999999999999999999999999988 889999999999999877899999
Q ss_pred cEEeCCCcEEeeecCCccCCCCCCCC-CccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCC-C
Q 045363 461 DIAAPGLDILAAYSELASVTGLPGDR-RIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTK-S 538 (712)
Q Consensus 461 DI~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~-~ 538 (712)
||+|||++|+++++..........+. +...|..+||||||||||||+||||||+||+|+|++||++||+||++++.. .
T Consensus 388 DI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~ 467 (649)
T 3i6s_A 388 DILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRK 467 (649)
T ss_dssp CEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSS
T ss_pred eEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCC
Confidence 99999999999998754443333222 335799999999999999999999999999999999999999999998764 2
Q ss_pred ---------CCCCCCCCCCCcCccccCCCCeeeecCcchhhhhhccCCCCccceeeecccccccc--cCCCCCCCCCCCC
Q 045363 539 ---------DDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLN--CSTIRPAQGLDGL 607 (712)
Q Consensus 539 ---------~~~~~~~G~G~in~~~A~~~~lv~~~~~~dy~~~lc~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l 607 (712)
+..++.||+|+||+.+|++||||||.+.+||+.|||++||+.++|+.|++ .+++ |+. .+.| |
T Consensus 468 ~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~--~~~~~~C~~----~~~~-l 540 (649)
T 3i6s_A 468 PIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIAR--SSASHNCSN----PSAD-L 540 (649)
T ss_dssp BCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHT--TTSCC-CCC----CCCC-C
T ss_pred cccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeec--CCCcCCCCC----chhh-c
Confidence 23578899999999999999999999999999999999999999999998 6667 975 4678 9
Q ss_pred CCCceeeee-cCCCc-ee--EEEEEEEEEcCCCCeeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEecccCCCC
Q 045363 608 NYPSMHFHF-TNESS-IS--AIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGAS 683 (712)
Q Consensus 608 n~ps~~~~~-~~~~~-~~--~~~~rtv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~ 683 (712)
|||||++.. +. +. .. ++|+|||||||+...+|+++++.|+|++|+|+|.+|+|++.+|+++|+|||+......+.
T Consensus 541 NyPs~~~~~~~~-~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~ 619 (649)
T 3i6s_A 541 NYPSFIALYSIE-GNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQS 619 (649)
T ss_dssp CCSSEEEEECCS-SCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---C
T ss_pred CCCcEEeecccC-CCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCc
Confidence 999999988 44 41 12 899999999999899999999999999999999999998899999999999987655567
Q ss_pred eEEEEEEEEc--CCcEEEeeEEEEec
Q 045363 684 ILSALLEWSD--TKHSVKSPILVYKQ 707 (712)
Q Consensus 684 ~~~G~i~~~~--~~~~v~~P~~~~~~ 707 (712)
|.||+|+|++ ++|.||+||+|+..
T Consensus 620 ~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 620 RNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp CCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred eEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 8999999999 99999999999875
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-113 Score=987.50 Aligned_cols=616 Identities=49% Similarity=0.833 Sum_probs=524.2
Q ss_pred cCCCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCC
Q 045363 76 TTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDN 155 (712)
Q Consensus 76 ~~~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~ 155 (712)
|+++|+|+|++ ..+|.+..+|+||+|||||||||++||+|+++++++++.+|+|.|+.+.+|. ||+|++++++| ..+
T Consensus 1 tt~s~~flGl~-~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~-~n~k~ig~~~~-~~~ 77 (621)
T 3vta_A 1 TTRSWDFLGFP-LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR-CNRKIIGARSY-HIG 77 (621)
T ss_dssp CCSHHHHTTCC-TTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCC-CCSSEEEEEEC-CCS
T ss_pred CCCChhHcCCC-ccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcc-cCcceeeeeec-ccC
Confidence 57899999997 4689999999999999999999999999999999999999999999999998 99999999999 777
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhCCC
Q 045363 156 ALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGV 235 (712)
Q Consensus 156 ~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~ 235 (712)
......+...++|.+||||||||||||+..++.+..|.+.+.++||||+|+|++||+|++.++..+++++||++|+++|+
T Consensus 78 ~~~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~di~~a~~~a~~~g~ 157 (621)
T 3vta_A 78 RPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGV 157 (621)
T ss_dssp SSCCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTEECHHHHHHHHHHHHHHTC
T ss_pred CccCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCCCCHHHHHHHHHHHHHhCC
Confidence 76666677788999999999999999999888888888888999999999999999999999999999999999999999
Q ss_pred cEEEeccCCCC-CCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEe
Q 045363 236 DLISISIGGPS-RSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTS 314 (712)
Q Consensus 236 dVIN~S~G~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 314 (712)
||||||||+.. ..+..++++.++++|+++|+++|+||||+|+...++++.+||+++|++++.++.|...+.++++..+.
T Consensus 158 dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~~~~~~~~~ 237 (621)
T 3vta_A 158 DIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQ 237 (621)
T ss_dssp SEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEEETTSCEEE
T ss_pred CEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEEeccCceee
Confidence 99999999874 34567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCc--hhHHhhccCceEEEEEecCC
Q 045363 315 GISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGS--QDYTIDRLQGAGTIVAVDAP 392 (712)
Q Consensus 315 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~--~~~~~~~~Ga~g~i~~~~~~ 392 (712)
+.++..+ ....++++...+...... .......|.+..+++.+++|||++|.++.. .. .....|+.+++++++..
T Consensus 238 ~~s~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~gkivl~~~~~~~~~~-~~~~~Ga~gvi~~~~~~ 313 (621)
T 3vta_A 238 GVSINTF--DNQYYPLVSGRDIPNTGF-DKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEF-FKSLDGAAGVLMTSNTR 313 (621)
T ss_dssp EBCCCCS--CCEEECEEETTTSCCTTC-CHHHHTTTCTTCSCGGGTTTSEEECSSCCCHHHH-HHHHTTCSEEEEECSCC
T ss_pred eeecccC--CCcccccccccccccccc-cccccccccccccccccccceEEEEecCCChhHH-hhhhcceeEEEEEecCC
Confidence 8877644 356677777665443321 334457799999999999999999998765 33 66778999999887654
Q ss_pred CCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEee
Q 045363 393 TDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAA 472 (712)
Q Consensus 393 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa 472 (712)
...+.+.+|...++..++..++.|+..+..+.+++....+..+...+.++.||||||+...++++||||+|||++|+++
T Consensus 314 -~~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~APG~~Ilsa 392 (621)
T 3vta_A 314 -DYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAA 392 (621)
T ss_dssp -SSCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEEECTTCCCBCTTSCCCSCTTCTTSCSCCEEEECSSEEEE
T ss_pred -CcccccccceEEECHHHHHHHHHHHhccCCcceEEecceEeccCCCCceeeecCCCCCCCCCCeeccccccCCcceEee
Confidence 3456778999999999999999999999999988877777766778999999999999877999999999999999999
Q ss_pred ecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCC-CCCCCCCCCCCCcC
Q 045363 473 YSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTK-SDDAELASGSGQIN 551 (712)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~-~~~~~~~~G~G~in 551 (712)
++....... ......|..|||||||||||||+||||||+||+|+|++||++||+||++++.. .+..+++||+|+||
T Consensus 393 ~~~~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~~~~~~~~~~GaG~v~ 469 (621)
T 3vta_A 393 WPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVN 469 (621)
T ss_dssp CCSSSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTTCTTTHHHHTTCBCC
T ss_pred cCccccccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCcccccCCCCCchhcCCCccC
Confidence 986443332 22345799999999999999999999999999999999999999999999877 67788999999999
Q ss_pred ccccCCCCeeeecCcchhhhhhccCCCCccceeeecccccccccCCCCCCCCCCCCCCCceeeeecCCCceeEEEEEEEE
Q 045363 552 PTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIGRLIGRKKKLNCSTIRPAQGLDGLNYPSMHFHFTNESSISAIFRRTVT 631 (712)
Q Consensus 552 ~~~A~~~~lv~~~~~~dy~~~lc~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~~rtv~ 631 (712)
+.+|++||||||+..+||+.|||++||+.++|+.+++ ....|+........| ||||||++........+++|+||||
T Consensus 470 ~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-lN~pS~~v~~~~~~~~~~t~~rtvt 546 (621)
T 3vta_A 470 PLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITG--DYSACTSGNTGRVWD-LNYPSFGLSVSPSQTFNQYFNRTLT 546 (621)
T ss_dssp HHHHSCCSEECCCCGGGCC-------------------------------CGGG-SCCSSEEEECCSSCCEEEEEEEEEE
T ss_pred HHHhcCCCeEeecccchhhhhhcccCCCchhheeeec--cccccCCCCcCcccc-cccccEEEEccCCCceEEEEEEEEE
Confidence 9999999999999999999999999999999999999 778898877777889 9999999976543445899999999
Q ss_pred EcCCCCeeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEecccCCCCeEEEEEEEEcCCcEEEeeEEEEec
Q 045363 632 NVGFAKSLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSDTKHSVKSPILVYKQ 707 (712)
Q Consensus 632 n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~~~v~~P~~~~~~ 707 (712)
|+|....||++++++|+|++|+|+|.+|+|++.+|+++|+|||+.. .++.|+||+|+|+|++|.||+||+|+..
T Consensus 547 nvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~--~~~~~~~g~l~w~d~~h~Vr~Pi~v~~~ 620 (621)
T 3vta_A 547 SVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS--IKGFVVSASLVWSDGVHYVRSPITITSL 620 (621)
T ss_dssp ECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC--CCSSEEEEEEEEECSSCCCEEEEEEECC
T ss_pred ccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec--CCCceEEEEEEEEcCCEEEEeCEEEEEe
Confidence 9999999999999999999999999999999889999999999865 3478999999999999999999999863
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-81 Score=746.41 Aligned_cols=526 Identities=22% Similarity=0.313 Sum_probs=418.3
Q ss_pred ccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCC-----------cccc-CCceeEEeE
Q 045363 82 FLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGA-----------NFTR-CNKKVIGAR 149 (712)
Q Consensus 82 ~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~-----------~f~~-~n~ki~g~~ 149 (712)
+++++ .+|+.+++|+||+|||||||||++||+|.+ +..|++.|..+. ++.. ||+|+++++
T Consensus 3 ~i~~~--~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~ 74 (926)
T 1xf1_A 3 PSQVK--TLQEKAGKGAGTVVAVIDAGFDKNHEAWRL------TDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYH 74 (926)
T ss_dssp TTCCH--HHHHHHCSCTTCEEEEEESCCTTCCCCCSC------CSCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEE
T ss_pred ccccH--HHHhccCCCCCcEEEEEecCCCCCCHhHcC------CCCCcccccchhhhcccccccCcccccccCcccceee
Confidence 45555 899999999999999999999999999984 346777665432 2333 999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC--CChHHHHHHH
Q 045363 150 YYNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG--CADMDILAAF 227 (712)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai 227 (712)
+| .++. ...|..||||||||||||+...+.+. .+.+.||||+|+|+++|+++..+ +...++++||
T Consensus 75 ~~-~~~~--------~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai 141 (926)
T 1xf1_A 75 DY-SKDG--------KTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAI 141 (926)
T ss_dssp ES-CCCS--------CCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHHH
T ss_pred cc-ccCC--------CCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCCCCcHHHHHHHH
Confidence 99 5542 22388999999999999987554322 13458999999999999998766 5567899999
Q ss_pred HHHHhCCCcEEEeccCCCC--CCCccchHHHHHHHhhhcCceEEEecCCCCCCC-------------Ccc--ccCCCceE
Q 045363 228 DDAIGDGVDLISISIGGPS--RSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ-------------GTV--ENVAPWIM 290 (712)
Q Consensus 228 ~~a~~~g~dVIN~S~G~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-------------~~~--~~~~p~vi 290 (712)
++|+++|+||||||||... .....+.+..+++.|.++|++||+||||+|+.. .++ ++.+||+|
T Consensus 142 ~~Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vi 221 (926)
T 1xf1_A 142 RDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTL 221 (926)
T ss_dssp HHHHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSE
T ss_pred HHHHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceE
Confidence 9999999999999999873 234567788888999999999999999999632 222 33479999
Q ss_pred EEceeccCceeEEEEEe-CCCceEeeeeeecCC--CCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEE
Q 045363 291 TVAASSIDRKFVTAVKL-GNGMRTSGISINTFS--PRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYC 367 (712)
Q Consensus 291 tVga~~~~~~~~~~~~~-~~g~~~~g~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~ 367 (712)
+|||++.++.+...+.+ +++....+.++.... .....+|+++... .|.+..+ .+++||||||
T Consensus 222 tVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~-------------g~~~~~~--~~v~Gkivl~ 286 (926)
T 1xf1_A 222 TVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR-------------GTKEDDF--KDVKGKIALI 286 (926)
T ss_dssp EEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT-------------SCSTTTT--TTCTTSEEEE
T ss_pred EEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC-------------CCCccch--hhcCCeEEEE
Confidence 99999999999988887 666555555443321 2466899988753 4766666 6899999999
Q ss_pred ecCCc-----hhHHhhccCceEEEEEecCCCC----cccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeee--eC
Q 045363 368 LGSGS-----QDYTIDRLQGAGTIVAVDAPTD----IAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVV--NT 436 (712)
Q Consensus 368 ~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~----~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~--~~ 436 (712)
+|+.| .. +++.+|++|+|++++.... ......+|+..++.+++..|+. .+.+++.+..+. ..
T Consensus 287 ~rg~~~~~~k~~-~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~------~~~~ti~~~~~~~~~~ 359 (926)
T 1xf1_A 287 ERGDIDFKDKIA-KAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD------NPQKTITFNATPKVLP 359 (926)
T ss_dssp ECCSSCHHHHHH-HHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH------CSSCEEEECSSCEEEE
T ss_pred ECCCCCHHHHHH-HHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh------CCceEEEecccceecc
Confidence 99877 55 8899999999999987543 2456789999999999998874 234455555443 33
Q ss_pred -CCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHH---
Q 045363 437 -STAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVK--- 512 (712)
Q Consensus 437 -~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~--- 512 (712)
...+.++.||||||+. ++++||||+|||++|++++++ ..|..+||||||||||||+||||+
T Consensus 360 ~~~~~~~a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~-------------~~y~~~SGTSMAaPhVAG~aALl~q~~ 424 (926)
T 1xf1_A 360 TASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVAN-------------NKYAKLSGTSMSAPLVAGIMGLLQKQY 424 (926)
T ss_dssp CSSCSBCCTTSCCCBCT--TSCBSCCEEEECCCEEESSSC-------------SSSCEEESCTTHHHHHHHHHHHHHHHH
T ss_pred cCCcceeccccCCCCCC--CCccCceEECCCCCEEeeccC-------------CcceecCccchhHHHHHHHHHHHHHHH
Confidence 5678999999999997 999999999999999999874 359999999999999999999996
Q ss_pred -hhCCCCCHHH----HHHHHHccccCCCCC---CCCCCCCCCCCCcCccccCCCCeeeecCcchhhhhhccCCCCcccee
Q 045363 513 -SFHPDWSPAA----IKSALMTTATPMKTK---SDDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYNSTAIG 584 (712)
Q Consensus 513 -~~~P~lsp~~----ik~~L~~TA~~~~~~---~~~~~~~~G~G~in~~~A~~~~lv~~~~~~dy~~~lc~~g~~~~~~~ 584 (712)
+.||+|+|+| ||++||+||+++... ..+++++||+|+||+.+|+++.+ |||..+++..
T Consensus 425 k~~~P~~sp~~~~~~Iks~L~~TA~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~--- 490 (926)
T 1xf1_A 425 ETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS--- 490 (926)
T ss_dssp HHSSSSSHHHHHHHHHHHHHHHHSBCCEEGGGTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS---
T ss_pred hccCCCCCHHHHHHHHHHHHHhcCCCcccCCCCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc---
Confidence 4599999997 999999999998653 13467899999999999999854 5677655321
Q ss_pred eecccccccccCCCCCCCCCCCCCCCceeeeecCCCceeEEEEEEEEEcCCC--CeeEEEEEeC--CCCcEEEEeeceEE
Q 045363 585 RLIGRKKKLNCSTIRPAQGLDGLNYPSMHFHFTNESSISAIFRRTVTNVGFA--KSLYKATVHS--PKGLSVTVSPRVLT 660 (712)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~~rtv~n~~~~--~~ty~~~~~~--~~g~~v~v~p~~~~ 660 (712)
+|.++++. + +++++|||||+|+. ..+|++++.. +++..++|+|..|.
T Consensus 491 --------------------------~i~l~~~~-~--~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~ 541 (926)
T 1xf1_A 491 --------------------------KVHLNNVS-D--KFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLY 541 (926)
T ss_dssp --------------------------CEEEEEEC-S--EEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred --------------------------eeeccccC-c--cEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeE
Confidence 34444443 4 78899999999985 4678877765 67888999887665
Q ss_pred ee-------cCCcEEEEEEEEEecc--------cCCCCeEEEEEEEE--cCCc-EEEeeEEEEecC
Q 045363 661 FS-------RSQQTRSFTVLVKGSM--------QSGASILSALLEWS--DTKH-SVKSPILVYKQF 708 (712)
Q Consensus 661 ~~-------~~~~~~~~~vt~~~~~--------~~~~~~~~G~i~~~--~~~~-~v~~P~~~~~~~ 708 (712)
+. ++||+++|+|||+... ++++.|+||+|+|+ +++| .||+||+++.++
T Consensus 542 ~~~~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~g~ 607 (926)
T 1xf1_A 542 ETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFRGD 607 (926)
T ss_dssp ECCCEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEESC
T ss_pred eccCCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEecC
Confidence 54 4599999999999762 24567999999999 4666 599999999987
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-59 Score=531.31 Aligned_cols=340 Identities=30% Similarity=0.414 Sum_probs=278.2
Q ss_pred ccceEEEecceeeeEEEEcCHHHHHHh-----------hcCCCeEEEEeCeeeecccCC---CccccccchhhhccCCCC
Q 045363 31 RESKIRSYGKSFNGFVARLLPHEAKRL-----------SEEESVVSVFENTRRKLHTTR---TWDFLGMSEKLQKRSSKA 96 (712)
Q Consensus 31 ~~~v~~~y~~~~ng~s~~l~~~~i~~l-----------~~~p~V~~V~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~ 96 (712)
..+++++|+ .|+||+++++++++++| +++|+|++|++++.+++.... .+....+....+|+.+++
T Consensus 59 g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 137 (539)
T 3afg_A 59 GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYD 137 (539)
T ss_dssp TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-----------CCBCSCCBCCSCC
T ss_pred CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccCccccCCccccccCcHhHHhcCCC
Confidence 478899995 79999999999999999 889999999999998875432 111222233489999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChhHH
Q 045363 97 QSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGTHT 176 (712)
Q Consensus 97 G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGThV 176 (712)
|+||+|||||||||++||+|.+ ++++.++| .++. ..+.|..||||||
T Consensus 138 G~gv~VaViDtGid~~Hpdl~~-------------------------~i~~~~d~-~~~~-------~~~~D~~gHGThV 184 (539)
T 3afg_A 138 GSGITIGIIDTGIDASHPDLQG-------------------------KVIGWVDF-VNGK-------TTPYDDNGHGTHV 184 (539)
T ss_dssp CTTCEEEEEESBCCTTSGGGTT-------------------------TEEEEEET-TTCC-------SSCCBSSSHHHHH
T ss_pred CCCcEEEEEecCCCCCChHHhC-------------------------CEeeeEEC-CCCC-------CCCCCCCCCHHHH
Confidence 9999999999999999999953 46667777 4432 3567889999999
Q ss_pred HHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhC----CCcEEEeccCCCCCCCcc
Q 045363 177 SSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGD----GVDLISISIGGPSRSYFD 251 (712)
Q Consensus 177 Agiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIN~S~G~~~~~~~~ 251 (712)
||||+|+..+. .|.+.||||+|+|+++|+++..+ ++.+++++||+||+++ |++|||||||........
T Consensus 185 Agiiag~~~~~-------~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~~~~ 257 (539)
T 3afg_A 185 ASIAAGTGAAS-------NGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGT 257 (539)
T ss_dssp HHHHHCCCGGG-------TTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCSCCCSC
T ss_pred HHHHhCcCccC-------CCCEEEECCCCEEEEEEeecCCCCcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCCCCccc
Confidence 99999985431 23348999999999999998876 7788999999999985 899999999987544456
Q ss_pred chHHHHHHHhhhcCceEEEecCCCCCCCC--ccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceee
Q 045363 252 DSISIGSFHAMKKGILTACSAGNDGPYQG--TVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYP 329 (712)
Q Consensus 252 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~ 329 (712)
+.+..++.++.++|++||+||||+|+... ..+...+++|+|||++.+
T Consensus 258 ~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~------------------------------- 306 (539)
T 3afg_A 258 DSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKY------------------------------- 306 (539)
T ss_dssp SHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECTT-------------------------------
T ss_pred hHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecCC-------------------------------
Confidence 78888888999999999999999997543 346678999999986422
Q ss_pred eEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChh
Q 045363 330 LTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPE 409 (712)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~ 409 (712)
T Consensus 307 -------------------------------------------------------------------------------- 306 (539)
T 3afg_A 307 -------------------------------------------------------------------------------- 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCcc
Q 045363 410 VGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIV 489 (712)
Q Consensus 410 ~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 489 (712)
+.++.||||||+. ++++||||+|||++|++++...... .+....
T Consensus 307 ------------------------------~~~a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~----~~~~~~ 350 (539)
T 3afg_A 307 ------------------------------DVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSM----GQPIND 350 (539)
T ss_dssp ------------------------------SCBCSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCC----SEECSS
T ss_pred ------------------------------cccccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCC----CCCCcc
Confidence 2678999999998 8999999999999999998642100 011113
Q ss_pred ceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccCCCC
Q 045363 490 PFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAVHPG 559 (712)
Q Consensus 490 ~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~~~~ 559 (712)
.|..++|||||||||||++|||+|++|+|++++||++|++||+++... ...+..||+|+||+.+|++..
T Consensus 351 ~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~~-~~~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 351 YYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPD-EIADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp SEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSGG-GCSBTTTBTCBCCHHHHHTGG
T ss_pred cccccCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC-CCCccCccCCccCHHHHhhhc
Confidence 599999999999999999999999999999999999999999987642 125788999999999999853
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-56 Score=491.32 Aligned_cols=320 Identities=26% Similarity=0.358 Sum_probs=266.1
Q ss_pred ccceEEEecceeeeEEEEcCHHHHHHhhcCCCeEEEEeCeeeeccc--------------CCCccccccchhhhccCCCC
Q 045363 31 RESKIRSYGKSFNGFVARLLPHEAKRLSEEESVVSVFENTRRKLHT--------------TRTWDFLGMSEKLQKRSSKA 96 (712)
Q Consensus 31 ~~~v~~~y~~~~ng~s~~l~~~~i~~l~~~p~V~~V~~~~~~~~~~--------------~~s~~~~~~~~~~~~~~~~~ 96 (712)
..+++++|. .|++|+++++++++++|+++|+|++|++++.++++. ...|.+..+....+|+.+ +
T Consensus 23 g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~-~ 100 (395)
T 2z2z_A 23 GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSIT-D 100 (395)
T ss_dssp TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCEECC------CCSCCCCHHHHHTTCGGGGGTC-S
T ss_pred CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCCCCcccccccCccccCCcchhhcCHHHHHhhc-C
Confidence 578999995 599999999999999999999999999999887642 134544445556899998 9
Q ss_pred CCC--cEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCChh
Q 045363 97 QSN--IIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHGT 174 (712)
Q Consensus 97 G~g--v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHGT 174 (712)
|+| |+|||||||||++||+|.+ ++...++| ..+.. ..+.....|..||||
T Consensus 101 G~g~~v~VaViDtGid~~Hp~l~~-------------------------~~~~~~~~-~~~~~--~~~~~~~~d~~gHGT 152 (395)
T 2z2z_A 101 GSVSVIQVAVLDTGVDYDHPDLAA-------------------------NIAWCVST-LRGKV--STKLRDCADQNGHGT 152 (395)
T ss_dssp SCCTTCEEEEEESCBCTTCTTTGG-------------------------GEEEEEEC-GGGCC--BCCHHHHBCSSSHHH
T ss_pred CCCCcEEEEEEcCCCCCCChhHhh-------------------------ccccCccc-cCCcc--cCCCCCCCCCCCCHH
Confidence 999 9999999999999999964 24445555 33210 000112467899999
Q ss_pred HHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhC--------------------
Q 045363 175 HTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGD-------------------- 233 (712)
Q Consensus 175 hVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~-------------------- 233 (712)
||||||+|.. ++. | +.||||+|+|+.+|+++..+ ++.+++++||+||+++
T Consensus 153 ~vAgiia~~~-n~~---g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~ 223 (395)
T 2z2z_A 153 HVIGTIAALN-NDI---G-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDD 223 (395)
T ss_dssp HHHHHHHCCC-SSS---S-----CCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSC
T ss_pred HHHHHHHeec-CCC---c-----eEEECCCCEEEEEEEecCCCCccHHHHHHHHHHHHhCccccccccccccccccccCC
Confidence 9999999983 222 1 28999999999999998876 7788999999999988
Q ss_pred CCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceE
Q 045363 234 GVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRT 313 (712)
Q Consensus 234 g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~ 313 (712)
+++|||||||... ....+..++.++.++|++||+||||+|......+...|++|+|||++.+
T Consensus 224 ~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------- 285 (395)
T 2z2z_A 224 AAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN--------------- 285 (395)
T ss_dssp CCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT---------------
T ss_pred CCeEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEecCC---------------
Confidence 9999999999864 2356667777889999999999999998877888889999999987532
Q ss_pred eeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCC
Q 045363 314 SGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPT 393 (712)
Q Consensus 314 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 393 (712)
T Consensus 286 -------------------------------------------------------------------------------- 285 (395)
T 2z2z_A 286 -------------------------------------------------------------------------------- 285 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeee
Q 045363 394 DIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAY 473 (712)
Q Consensus 394 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 473 (712)
+.++.||++|| +|+|||++|++++
T Consensus 286 ----------------------------------------------~~~a~fS~~G~----------~v~APG~~i~s~~ 309 (395)
T 2z2z_A 286 ----------------------------------------------DNIASFSNRQP----------EVSAPGVDILSTY 309 (395)
T ss_dssp ----------------------------------------------SCBCTTSCSSC----------SEEEECSSEEEEE
T ss_pred ----------------------------------------------CCCCcccCCCC----------CEEeCCCCeeeec
Confidence 36789999997 6799999999998
Q ss_pred cCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCC-------------CCCHHHHHHHHHccccCCCCCCCC
Q 045363 474 SELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHP-------------DWSPAAIKSALMTTATPMKTKSDD 540 (712)
Q Consensus 474 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-------------~lsp~~ik~~L~~TA~~~~~~~~~ 540 (712)
+. +.|..++|||||||||||++|||+|++| .|++.+||++|++||+++... .
T Consensus 310 ~~-------------~~y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~--g 374 (395)
T 2z2z_A 310 PD-------------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT--G 374 (395)
T ss_dssp TT-------------TEEEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSS--S
T ss_pred CC-------------CceEecCCHHHHHHHHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCC--C
Confidence 74 3599999999999999999999999999 999999999999999998652 2
Q ss_pred CCCCCCCCCcCccccCCC
Q 045363 541 AELASGSGQINPTKAVHP 558 (712)
Q Consensus 541 ~~~~~G~G~in~~~A~~~ 558 (712)
.+..||||+||+.+|++.
T Consensus 375 ~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 375 WDADYGYGVVRAALAVQA 392 (395)
T ss_dssp SBTTTBTCBCCHHHHHHH
T ss_pred CCCCccCceeCHHHHHHH
Confidence 578899999999999873
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-56 Score=497.95 Aligned_cols=334 Identities=20% Similarity=0.253 Sum_probs=267.8
Q ss_pred ccccceEEEecceeeeEEEEcCHHHHHHhhc-CCCeEEEEeCeeeecccC-------------CCccccccchh-hhccC
Q 045363 29 LARESKIRSYGKSFNGFVARLLPHEAKRLSE-EESVVSVFENTRRKLHTT-------------RTWDFLGMSEK-LQKRS 93 (712)
Q Consensus 29 ~~~~~v~~~y~~~~ng~s~~l~~~~i~~l~~-~p~V~~V~~~~~~~~~~~-------------~s~~~~~~~~~-~~~~~ 93 (712)
....+++++| ..|++|+++++++++++|++ +|+|++|++++.+++... .+|.+..+... .+|+.
T Consensus 63 ~~g~~v~~~~-~~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~ 141 (471)
T 3t41_A 63 KKSLNVVYNI-PELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDD 141 (471)
T ss_dssp HHTCEEEEEE-GGGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGG
T ss_pred hCCCEEEEec-CCccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhc
Confidence 3457788888 55999999999999999999 999999999988776543 24666666544 79999
Q ss_pred CCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCCh
Q 045363 94 SKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGHG 173 (712)
Q Consensus 94 ~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gHG 173 (712)
+.+|+||+|||||||||++||+|.+... .+. ..++....| .........+...+.|..|||
T Consensus 142 ~~~G~gv~VaViDtGid~~Hp~~~~~~~-------~~~-----------~~~~~~~~~-~~~~~~~~~~~~~~~d~~gHG 202 (471)
T 3t41_A 142 LPKHANTKIAIIDTGVMKNHDDLKNNFS-------TDS-----------KNLVPLNGF-RGTEPEETGDVHDVNDRKGHG 202 (471)
T ss_dssp CCSSCCCCEEEEESCCCTTCTTTTTTBC-------TTC-----------EECCCTTCG-GGCCTTCCCCTTCCCCSSSHH
T ss_pred cCCCCCcEEEEEeCCCCCCChhHhcCcc-------cCC-----------cccccCCCc-cCCCcccCCCCCCCcCCCCcc
Confidence 9999999999999999999999986421 110 001111112 111111122334567899999
Q ss_pred hHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhCCCcEEEeccCCCCC-C----
Q 045363 174 THTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGGPSR-S---- 248 (712)
Q Consensus 174 ThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S~G~~~~-~---- 248 (712)
|||||||+|++. +.||||+|+|+++|+++...+...++++||+||++++++|||||||.... .
T Consensus 203 T~vAgiiaa~g~------------~~GvAp~a~l~~~kv~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~ 270 (471)
T 3t41_A 203 TMVSGQTSANGK------------LIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDH 270 (471)
T ss_dssp HHHHHHHHCBSS------------SBCSSTTSCEEEEECCSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCC
T ss_pred chhhheeecCCc------------eeEECCCCeEEEEEeccCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccc
Confidence 999999998642 38999999999999998877889999999999999999999999997410 0
Q ss_pred --------CccchHHHHHHHhhhcCceEEEecCCCCCCCC------------------ccccCCCceEEEceeccCceeE
Q 045363 249 --------YFDDSISIGSFHAMKKGILTACSAGNDGPYQG------------------TVENVAPWIMTVAASSIDRKFV 302 (712)
Q Consensus 249 --------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~------------------~~~~~~p~vitVga~~~~~~~~ 302 (712)
...+.+..++..+.++|++||+||||+|.... ..++..|++|+|||++.+
T Consensus 271 ~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~~---- 346 (471)
T 3t41_A 271 QTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQK---- 346 (471)
T ss_dssp CSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEECTT----
T ss_pred cccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeEEEEeeCCC----
Confidence 12356777888889999999999999997643 256677899999986532
Q ss_pred EEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCc
Q 045363 303 TAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQG 382 (712)
Q Consensus 303 ~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga 382 (712)
T Consensus 347 -------------------------------------------------------------------------------- 346 (471)
T 3t41_A 347 -------------------------------------------------------------------------------- 346 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcE
Q 045363 383 AGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDI 462 (712)
Q Consensus 383 ~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI 462 (712)
+.++.||++||+. |||
T Consensus 347 ---------------------------------------------------------~~~a~fS~~G~~~-------~di 362 (471)
T 3t41_A 347 ---------------------------------------------------------SNLSEFSNFGMNY-------TDI 362 (471)
T ss_dssp ---------------------------------------------------------SSBCTTCCBCTTT-------CCE
T ss_pred ---------------------------------------------------------CCCCCccCCCCCC-------CeE
Confidence 3688999999973 599
Q ss_pred EeCCCc----------------------EEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCC-CCC
Q 045363 463 AAPGLD----------------------ILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHP-DWS 519 (712)
Q Consensus 463 ~APG~~----------------------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~ls 519 (712)
+|||++ |+++++. ..|..++|||||||||||++|||+|++| .|+
T Consensus 363 ~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~-------------~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~ 429 (471)
T 3t41_A 363 AAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANN-------------GRYIYQAGTALATPKVSGALALIIDKYHLEKH 429 (471)
T ss_dssp EEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred EecCCCcccccccccccccccccccCceeEecCCC-------------CCEEeecchHHHHHHHHHHHHHHHHhccCCCC
Confidence 999987 8888764 3599999999999999999999999999 899
Q ss_pred HHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccCCC
Q 045363 520 PAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAVHP 558 (712)
Q Consensus 520 p~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~~~ 558 (712)
|++||++|++||++.... ++..||||+||+.+|++.
T Consensus 430 ~~~v~~~L~~tA~~~~~~---~~~~~G~G~vd~~~Al~~ 465 (471)
T 3t41_A 430 PDKAIELLYQHGTSKNNK---PFSRYGHGELDVYKALNV 465 (471)
T ss_dssp HHHHHHHHHHHSBCCSCC---CHHHHTTCBBCHHHHTTT
T ss_pred HHHHHHHHHHhCCCCCCC---CcCccccChhCHHHHHHH
Confidence 999999999999987653 778899999999999984
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-54 Score=479.46 Aligned_cols=382 Identities=20% Similarity=0.299 Sum_probs=275.5
Q ss_pred CCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCC
Q 045363 78 RTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157 (712)
Q Consensus 78 ~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~ 157 (712)
.+|.+..+.+..+|+.+ |+||+|||||||||++||+|.+. ++..+++...+
T Consensus 4 ~~W~l~~i~~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~-------------------------~~~~~~~~~~~-- 54 (441)
T 1y9z_A 4 TPWGQTFVGATVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN-------------------------NVTGTNNSGTG-- 54 (441)
T ss_dssp CCHHHHHTTCSSSCCTT--GGGCEEEEEESCCCTTSTTTTTS-------------------------EEEECCCTTSC--
T ss_pred CCCChhhcChhhhhhcC--CCCcEEEEEcCCCCCCChhHhcC-------------------------cccCcccCCCC--
Confidence 46777667667899865 77999999999999999999743 11122220111
Q ss_pred CCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCC--eEEEEEeecCCC-CChHHHHHHHHHHHhC-
Q 045363 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSA--RIAMYKVCWSGG-CADMDILAAFDDAIGD- 233 (712)
Q Consensus 158 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A--~l~~~kv~~~~g-~~~~~i~~ai~~a~~~- 233 (712)
+...+.|..||||||||||+|..++ .| +.||||+| +|+.+|+++..+ ++.+++++||+||+++
T Consensus 55 ----~~~~~~d~~gHGT~vAgiia~~~~~----~g-----~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~ 121 (441)
T 1y9z_A 55 ----NWYQPGNNNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSG 121 (441)
T ss_dssp ----CTTCCCSSCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTT
T ss_pred ----CCCCCCCCCCcHHHHHHHHhcccCC----CC-----ceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhc
Confidence 1234668899999999999998632 12 38999995 999999998877 7888999999999999
Q ss_pred CCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeC-----
Q 045363 234 GVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLG----- 308 (712)
Q Consensus 234 g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~----- 308 (712)
|++|||||||... ....+..++.++.++|++||+||||+|.....+++..+++|+|||++.+.....+...+
T Consensus 122 g~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv 198 (441)
T 1y9z_A 122 GANVVTMSLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEI 198 (441)
T ss_dssp CCSEEEECCCBSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEE
T ss_pred CCcEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEE
Confidence 9999999999864 23456667778999999999999999988778888899999999998765332211111
Q ss_pred --------------CCc----eEeeeeeecCCC--CCceee--eEecccccccccccccCcCCCCCC--CCCCCcccceE
Q 045363 309 --------------NGM----RTSGISINTFSP--RKAMYP--LTNGARAANVTAEIYGNVGACDYG--TLSMKKVKGKI 364 (712)
Q Consensus 309 --------------~g~----~~~g~~~~~~~~--~~~~~~--l~~~~~~~~~~~~~~~~~~~c~~~--~~~~~~~~gki 364 (712)
++. .+.|.+++.... ....++ +.+..+..... .......|... .++..+++|||
T Consensus 199 ~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~--~~~~~~~C~~~~~~~~~~~~~gki 276 (441)
T 1y9z_A 199 SGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINAS--ATGALAECTVNGTSFSCGNMANKI 276 (441)
T ss_dssp EEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCE--EEEEEEEEEEETTEEECCCCTTEE
T ss_pred EeccCCeeccccCCCcccceeecccccccccccCcccccccCCccccccccccc--cccchhccccccccccCCCccccE
Confidence 111 122222221110 000000 11110000000 01122457643 56788999999
Q ss_pred EEEecCCc----------hhHHhhccCceEEEEEecCCCC---------cccceeeeEEEeChhhHHHHHHHHhcCCCce
Q 045363 365 VYCLGSGS----------QDYTIDRLQGAGTIVAVDAPTD---------IAIATLIAGTFVVPEVGIKIDQYINSTKNPQ 425 (712)
Q Consensus 365 vl~~~~~~----------~~~~~~~~Ga~g~i~~~~~~~~---------~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 425 (712)
++|+|+.+ .. +++.+|+.|+|++++.... ......+|.+.++.++|..|+.|+.++
T Consensus 277 vl~~rg~~~~~~~~~~~~~~-~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~---- 351 (441)
T 1y9z_A 277 CLVERVGNQGSSYPEINSTK-ACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS---- 351 (441)
T ss_dssp EEEECCSCSSSSCTHHHHHH-HHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----
T ss_pred EEEeccccCcccccHHHHHH-HHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----
Confidence 99999754 45 7899999999999876421 124567899999999999999876431
Q ss_pred EEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHH
Q 045363 426 AVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAA 505 (712)
Q Consensus 426 ~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 505 (712)
. .+ ++.. ...|..++||||||||||
T Consensus 352 ~----------------------------------t~--------~~~~-------------~~~y~~~sGTSmAaP~VA 376 (441)
T 1y9z_A 352 T----------------------------------TV--------SNQG-------------NQDYEYYNGTSMATPHVS 376 (441)
T ss_dssp E----------------------------------EE--------EEEE-------------EESEEEECSHHHHHHHHH
T ss_pred c----------------------------------cc--------cccc-------------CCCceeecccccCCcccc
Confidence 0 11 1111 135999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccCCCCeeeecCcchhhhhhccCCCC
Q 045363 506 AAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCKEGYN 579 (712)
Q Consensus 506 G~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~~~~lv~~~~~~dy~~~lc~~g~~ 579 (712)
|++|||+|+||+|+|++||++||+||++++... .+.+||+|+||+.+|+ ||+.|||+.++.
T Consensus 377 G~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g--~~~~~G~G~vn~~~A~-----------~~~~~lc~~~~~ 437 (441)
T 1y9z_A 377 GVATLVWSYHPECSASQVRAALNATADDLSVAG--RDNQTGYGMINAVAAK-----------AYLDESCTGPTD 437 (441)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS--CBTTTBTCBCCHHHHH-----------HHHHHCTTCC--
T ss_pred hHHHHHHHHCCCCCHHHHHHHHHhhchhhccCC--CcccccccccCHHHHH-----------HHHHhhhcCCCC
Confidence 999999999999999999999999999987642 4678999999999995 599999998774
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-53 Score=482.68 Aligned_cols=349 Identities=22% Similarity=0.255 Sum_probs=262.3
Q ss_pred ccceEEEecceeeeEEEEcCH----HHHHHhhc--CCCeEEEEeCeeeeccc----------------------------
Q 045363 31 RESKIRSYGKSFNGFVARLLP----HEAKRLSE--EESVVSVFENTRRKLHT---------------------------- 76 (712)
Q Consensus 31 ~~~v~~~y~~~~ng~s~~l~~----~~i~~l~~--~p~V~~V~~~~~~~~~~---------------------------- 76 (712)
..++.+++ ..+++++++++. +.+++|++ +|+|++|||++.+++..
T Consensus 52 g~~v~~~~-~~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (671)
T 1r6v_A 52 NGKVVLEL-PQIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEE 130 (671)
T ss_dssp TCEEEEEE-GGGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSST
T ss_pred CCeEEEEc-CCCcEEEEEeCCcCHHHHHHHHHhccCCCceEEecCeEEEeccccccCccccccccccccccccccccccc
Confidence 46777888 678999999864 34566764 79999999997655431
Q ss_pred --CCCccccccchhhh-ccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccC
Q 045363 77 --TRTWDFLGMSEKLQ-KRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNL 153 (712)
Q Consensus 77 --~~s~~~~~~~~~~~-~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~ 153 (712)
...|.+..++...+ |+. .+|+||+|||||||||++||+|.+.. +.++++..
T Consensus 131 ~~~~~W~l~~I~~~~a~w~~-~tG~gV~VAVIDTGVd~~HpdL~~~~-------------------------~~g~~~~~ 184 (671)
T 1r6v_A 131 LSNELWGLEAIGVTQQLWEE-ASGTNIIVAVVDTGVDGTHPDLEGQV-------------------------IAGYRPAF 184 (671)
T ss_dssp TGGGCHHHHHTTCCHHHHHH-CSCTTCEEEEEESCCBTTSGGGTTTB-------------------------CCEEEGGG
T ss_pred ccccCCchhccCCchhhhhc-cCCCCCEEEEEeCCCCCCCccccccE-------------------------EecccccC
Confidence 12343334444567 988 89999999999999999999997531 11111101
Q ss_pred CCCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecC------CC-CChHHHHHH
Q 045363 154 DNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWS------GG-CADMDILAA 226 (712)
Q Consensus 154 ~~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~------~g-~~~~~i~~a 226 (712)
+... + ...+..|.+||||||||||||.. ++. | +.||||+|+|+++|+++. .+ .....+++|
T Consensus 185 ~~~~--p-~~~d~~d~~gHGThVAGiIAa~~-ng~---g-----v~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~a 252 (671)
T 1r6v_A 185 DEEL--P-AGTDSSYGGSAGTHVAGTIAAKK-DGK---G-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAG 252 (671)
T ss_dssp TEEE--C-TTCBCCTTCSHHHHHHHHHHCCC-SSS---S-----CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHH
T ss_pred CCcC--C-CCCCCccCCCcchhhhhhhhccC-CCC---c-----eEEECCCCEEEEEEeccCccccCCCCccCHHHHHHH
Confidence 1000 0 00234467899999999999974 221 2 289999999999999986 22 345678999
Q ss_pred HHHHHhCCCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCC-CccccCCCceEEEceeccCceeEEEE
Q 045363 227 FDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ-GTVENVAPWIMTVAASSIDRKFVTAV 305 (712)
Q Consensus 227 i~~a~~~g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~ 305 (712)
|+||+++|++|||||||... ....+..++..|.++|++||+||||+|... ...++..|++|+|||++.+..
T Consensus 253 i~~A~~~gadVIN~SlG~~~---~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~----- 324 (671)
T 1r6v_A 253 IIWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG----- 324 (671)
T ss_dssp HHHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT-----
T ss_pred HHHHHHcCCCEEEeCCCCCC---CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC-----
Confidence 99999999999999999863 345677788889999999999999999765 566778899999999753310
Q ss_pred EeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEE
Q 045363 306 KLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGT 385 (712)
Q Consensus 306 ~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~ 385 (712)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeC
Q 045363 386 IVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAP 465 (712)
Q Consensus 386 i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~AP 465 (712)
...++.||++||.. ||+||
T Consensus 325 -----------------------------------------------------~~~~a~fSn~G~~v--------dv~AP 343 (671)
T 1r6v_A 325 -----------------------------------------------------TFRVAGFSSRSDGV--------SVGAP 343 (671)
T ss_dssp -----------------------------------------------------EEEECSSSCCCTTE--------EEEEE
T ss_pred -----------------------------------------------------ceeeccccCCCCCe--------eEEec
Confidence 01478999999987 99999
Q ss_pred CCcEEeeecCCccCCC-----CCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCC
Q 045363 466 GLDILAAYSELASVTG-----LPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDD 540 (712)
Q Consensus 466 G~~I~sa~~~~~~~~~-----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~ 540 (712)
|++|+++++....... .........|..++|||||||||||++|||+|++|+|++.+||++|++||+++... .
T Consensus 344 G~~I~St~p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~--g 421 (671)
T 1r6v_A 344 GVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN--G 421 (671)
T ss_dssp CSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS--S
T ss_pred CCCEEeecCCCCccccccccccccccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCC--C
Confidence 9999999875321100 00011124699999999999999999999999999999999999999999988653 2
Q ss_pred CCCCCCCCCcCccccCCCCeeeecCcchh
Q 045363 541 AELASGSGQINPTKAVHPGLIYDLNLSSY 569 (712)
Q Consensus 541 ~~~~~G~G~in~~~A~~~~lv~~~~~~dy 569 (712)
.+..||||+||+.+|++..|..+....||
T Consensus 422 ~d~~~G~G~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 422 WDHDTGYGLVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp CBTTTBTCBCCHHHHHHCCCCSSSEEEEE
T ss_pred CCCCcccceeCHHHHhhhhcCCCCCccce
Confidence 46789999999999999877665544443
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-52 Score=435.12 Aligned_cols=269 Identities=28% Similarity=0.357 Sum_probs=222.5
Q ss_pred CCCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCC
Q 045363 77 TRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNA 156 (712)
Q Consensus 77 ~~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~ 156 (712)
..+|.+..++...+|+.+..|+||+|+|||||||++||+|.+ +++..++| .++.
T Consensus 10 ~~~w~l~~i~~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~-------------------------~~~~~~~~-~~~~ 63 (280)
T 1dbi_A 10 GYQYGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDG-------------------------KVIKGYDF-VDND 63 (280)
T ss_dssp HHCCTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTT-------------------------TEEEEEET-TTTB
T ss_pred cCCCChhhcCcHHHHhhcCCCCCCEEEEEeCCcCCCChhhcc-------------------------Ccccceec-cCCC
Confidence 346777777778999999888899999999999999999964 34556667 3321
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCC
Q 045363 157 LDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGV 235 (712)
Q Consensus 157 ~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~ 235 (712)
..+.|..+|||||||||+|...++.+ +.||||+|+|+.+|+++..+ ++.+++++||+||+++|+
T Consensus 64 -------~~~~d~~gHGT~vAgiia~~~~~~~g--------~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~ 128 (280)
T 1dbi_A 64 -------YDPMDLNNHGTHVAGIAAAETNNATG--------IAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGA 128 (280)
T ss_dssp -------SCCCCSSSHHHHHHHHHHCCCSSSSS--------CCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTC
T ss_pred -------CCCCCCCCcHHHHHHHHhCcCCCCCc--------ceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCC
Confidence 34578899999999999998655332 28999999999999998766 788899999999999999
Q ss_pred cEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEee
Q 045363 236 DLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSG 315 (712)
Q Consensus 236 dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g 315 (712)
+|||||||... ....+..++.++.++|++||+||||+|......+...+++|+|||++.+
T Consensus 129 ~Vin~S~G~~~---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~----------------- 188 (280)
T 1dbi_A 129 EVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY----------------- 188 (280)
T ss_dssp SEEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT-----------------
T ss_pred CEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC-----------------
Confidence 99999999863 3456777788899999999999999998777778888999999986532
Q ss_pred eeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCc
Q 045363 316 ISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDI 395 (712)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~ 395 (712)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecC
Q 045363 396 AIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSE 475 (712)
Q Consensus 396 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~ 475 (712)
+.++.||++||.. ||+|||.+|+++++.
T Consensus 189 --------------------------------------------~~~~~~S~~G~~~--------dv~ApG~~i~s~~~~ 216 (280)
T 1dbi_A 189 --------------------------------------------DRLASFSNYGTWV--------DVVAPGVDIVSTITG 216 (280)
T ss_dssp --------------------------------------------SCBCTTBCCSTTC--------CEEEECSSEEEEETT
T ss_pred --------------------------------------------CCcCCCCCCCCCc--------eEEEecCCeEeecCC
Confidence 3678899999865 999999999999864
Q ss_pred CccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCcccc
Q 045363 476 LASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKA 555 (712)
Q Consensus 476 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A 555 (712)
+.|..++|||||||||||++|||++ |.+++.+||++|++||+++.. ....||+|+||+.+|
T Consensus 217 -------------~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~----~~~~~G~G~vn~~~A 277 (280)
T 1dbi_A 217 -------------NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG----TGTYFKYGRINSYNA 277 (280)
T ss_dssp -------------TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT----BTTTBSSEECCHHHH
T ss_pred -------------CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC----CCCcccCCEECHHHH
Confidence 3599999999999999999999987 899999999999999999875 356799999999999
Q ss_pred CC
Q 045363 556 VH 557 (712)
Q Consensus 556 ~~ 557 (712)
++
T Consensus 278 ~~ 279 (280)
T 1dbi_A 278 VT 279 (280)
T ss_dssp HT
T ss_pred hc
Confidence 86
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-52 Score=432.51 Aligned_cols=265 Identities=31% Similarity=0.452 Sum_probs=227.0
Q ss_pred CCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCC
Q 045363 78 RTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157 (712)
Q Consensus 78 ~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~ 157 (712)
.+|.+..++...+|+.+++|+||+|+|||||| .+||+|+ +...++| ..+.
T Consensus 4 ~~W~l~~i~~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~---------------------------~~~~~~~-~~~~- 53 (269)
T 1gci_A 4 VPWGISRVQAPAAHNRGLTGSGVKVAVLDTGI-STHPDLN---------------------------IRGGASF-VPGE- 53 (269)
T ss_dssp CCHHHHHTTHHHHHHTTCSCTTCEEEEEESCC-CCCTTCC---------------------------EEEEEEC-STTC-
T ss_pred CCcChhhcCcHHHHhcCCCCCCCEEEEECCCC-CCCHhhc---------------------------ccCCccc-CCCC-
Confidence 46777777778999999999999999999999 8999993 2344555 3321
Q ss_pred CCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCc
Q 045363 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVD 236 (712)
Q Consensus 158 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~d 236 (712)
..+.|..+|||||||||+|.. ++. | +.||||+|+|+.+|+++..+ ++.+++++||+||++++++
T Consensus 54 ------~~~~d~~gHGT~vAgiia~~~-~~~---~-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~ 118 (269)
T 1gci_A 54 ------PSTQDGNGHGTHVAGTIAALN-NSI---G-----VLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMH 118 (269)
T ss_dssp ------CSCSCSSSHHHHHHHHHHCCC-SSS---B-----CCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCS
T ss_pred ------CCCCCCCCChHHHHHHHhcCc-CCC---C-----cEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCe
Confidence 235688999999999999973 211 1 28999999999999998766 6788999999999999999
Q ss_pred EEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeee
Q 045363 237 LISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGI 316 (712)
Q Consensus 237 VIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 316 (712)
|||||||... ....+..++.++.++|++||+||||+|......+...+++|+|||++.+
T Consensus 119 Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------ 177 (269)
T 1gci_A 119 VANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN------------------ 177 (269)
T ss_dssp EEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT------------------
T ss_pred EEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC------------------
Confidence 9999999864 2456777778889999999999999998877788888999999986532
Q ss_pred eeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcc
Q 045363 317 SINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIA 396 (712)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 396 (712)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T 1gci_A 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCC
Q 045363 397 IATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSEL 476 (712)
Q Consensus 397 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 476 (712)
+.++.||++||.. ||+|||.+|+++++.
T Consensus 178 -------------------------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~~- 205 (269)
T 1gci_A 178 -------------------------------------------NNRASFSQYGAGL--------DIVAPGVNVQSTYPG- 205 (269)
T ss_dssp -------------------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEETT-
T ss_pred -------------------------------------------CCCCCCCCCCCCc--------ceEecCCCeEeecCC-
Confidence 3678899999976 999999999999864
Q ss_pred ccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccC
Q 045363 477 ASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556 (712)
Q Consensus 477 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~ 556 (712)
..|..++|||||||||||++|||+|++|+|++.|||++|++||+++. .+..||||+||+.+|+
T Consensus 206 ------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g-----~~~~~G~G~vn~~~A~ 268 (269)
T 1gci_A 206 ------------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG-----STNLYGSGLVNAEAAT 268 (269)
T ss_dssp ------------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS-----CHHHHTTCBCCHHHHT
T ss_pred ------------CCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC-----CCCCcccCccCHHHHc
Confidence 35899999999999999999999999999999999999999999986 3678999999999998
Q ss_pred C
Q 045363 557 H 557 (712)
Q Consensus 557 ~ 557 (712)
+
T Consensus 269 ~ 269 (269)
T 1gci_A 269 R 269 (269)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-52 Score=434.75 Aligned_cols=266 Identities=30% Similarity=0.428 Sum_probs=225.2
Q ss_pred CCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCC
Q 045363 78 RTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157 (712)
Q Consensus 78 ~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~ 157 (712)
.+|.+..++...+|+.+++|+||+|+|||||||++||+|+ +...++| ..+.
T Consensus 4 ~~w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~---------------------------~~~g~~~-~~~~- 54 (274)
T 1r0r_E 4 VPYGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLN---------------------------VVGGASF-VAGE- 54 (274)
T ss_dssp CCTHHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC---------------------------EEEEEEC-STTC-
T ss_pred CCCchhhcCCHHHHhcCCCCCCCEEEEEcCCCCCCCHhHc---------------------------CCCCccc-cCCC-
Confidence 4677777777899999999999999999999999999993 2344555 3321
Q ss_pred CCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCc
Q 045363 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVD 236 (712)
Q Consensus 158 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~d 236 (712)
....|..+|||||||||+|.. ++. | +.||||+|+|+.+|+++..+ ++.+++++||+||++++++
T Consensus 55 ------~~~~d~~gHGT~vAgiia~~~-~~~---g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~ 119 (274)
T 1r0r_E 55 ------AYNTDGNGHGTHVAGTVAALD-NTT---G-----VLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMD 119 (274)
T ss_dssp ------CTTCCSSSHHHHHHHHHHCCS-SSS---B-----CCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCS
T ss_pred ------CCCCCCCCCHHHHHHHHHccC-CCC---c-----eEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCC
Confidence 235678999999999999973 211 1 28999999999999998776 6788999999999999999
Q ss_pred EEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCC----CccccCCCceEEEceeccCceeEEEEEeCCCce
Q 045363 237 LISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ----GTVENVAPWIMTVAASSIDRKFVTAVKLGNGMR 312 (712)
Q Consensus 237 VIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 312 (712)
|||||||... ....+..++.++.++|++||+||||+|... ...+...|++|+||+++.+
T Consensus 120 Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~-------------- 182 (274)
T 1r0r_E 120 VINMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN-------------- 182 (274)
T ss_dssp EEEECEEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT--------------
T ss_pred EEEeCCCCCC---CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecCC--------------
Confidence 9999999864 245677778888999999999999999753 3456777899999986422
Q ss_pred EeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCC
Q 045363 313 TSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAP 392 (712)
Q Consensus 313 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~ 392 (712)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T 1r0r_E 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEee
Q 045363 393 TDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAA 472 (712)
Q Consensus 393 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa 472 (712)
+.++.||++||.. ||+|||.+|+++
T Consensus 183 -----------------------------------------------~~~~~~S~~G~~~--------di~APG~~i~s~ 207 (274)
T 1r0r_E 183 -----------------------------------------------SNRASFSSVGAEL--------EVMAPGAGVYST 207 (274)
T ss_dssp -----------------------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEE
T ss_pred -----------------------------------------------CCcCccCCCCCCc--------eEEeCCCCeEee
Confidence 3678899999865 999999999999
Q ss_pred ecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCc
Q 045363 473 YSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINP 552 (712)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~ 552 (712)
++. +.|..++|||||||||||++|||+|++|+|++++||++|++||+++. .+..||||+||+
T Consensus 208 ~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g-----~~~~~G~G~~~~ 269 (274)
T 1r0r_E 208 YPT-------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG-----SSFYYGKGLINV 269 (274)
T ss_dssp ETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS-----CHHHHTTCBCCH
T ss_pred cCC-------------CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC-----CCCCcccCccCH
Confidence 864 35999999999999999999999999999999999999999999985 467899999999
Q ss_pred cccCC
Q 045363 553 TKAVH 557 (712)
Q Consensus 553 ~~A~~ 557 (712)
.+|++
T Consensus 270 ~~A~~ 274 (274)
T 1r0r_E 270 EAAAQ 274 (274)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-52 Score=432.03 Aligned_cols=268 Identities=29% Similarity=0.432 Sum_probs=225.4
Q ss_pred CCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCC
Q 045363 78 RTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157 (712)
Q Consensus 78 ~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~ 157 (712)
.+|.+..+++..+|..+++|+||+|||||||||++||+|+ +...++| ..+.
T Consensus 4 ~~w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~---------------------------~~~g~~~-~~~~- 54 (281)
T 1to2_E 4 VPYGVSQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK---------------------------VAGGASM-VPSE- 54 (281)
T ss_dssp CCHHHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC---------------------------EEEEEEC-CTTC-
T ss_pred CCcchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCCHHHc---------------------------CcCCccc-cCCC-
Confidence 4677777777899999999999999999999999999994 2334445 3221
Q ss_pred CCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCc
Q 045363 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVD 236 (712)
Q Consensus 158 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~d 236 (712)
.....|..+|||||||||+|.. ++. | +.||||+|+|+.+|+++..+ +..++++++|+|+++++++
T Consensus 55 -----~~~~~d~~gHGT~vAgiia~~~-~~~---g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~ 120 (281)
T 1to2_E 55 -----TNPFQDNNSHGTHVAGTVAALN-NSI---G-----VLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120 (281)
T ss_dssp -----CCTTCCSSSHHHHHHHHHHCCS-SSS---S-----BCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCS
T ss_pred -----CCCCCCCCCcHHHHHHHHhccC-CCC---c-----ceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCc
Confidence 1123678999999999999973 211 1 28999999999999998766 6788999999999999999
Q ss_pred EEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCC----CccccCCCceEEEceeccCceeEEEEEeCCCce
Q 045363 237 LISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ----GTVENVAPWIMTVAASSIDRKFVTAVKLGNGMR 312 (712)
Q Consensus 237 VIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 312 (712)
|||||||... ....+..++.++.++|++||+||||+|... ...+...|++|+|||++.+
T Consensus 121 Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~-------------- 183 (281)
T 1to2_E 121 VINMSLGGPS---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS-------------- 183 (281)
T ss_dssp EEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT--------------
T ss_pred EEEECCcCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecCC--------------
Confidence 9999999864 245677778888999999999999999762 3456777899999986422
Q ss_pred EeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCC
Q 045363 313 TSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAP 392 (712)
Q Consensus 313 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~ 392 (712)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T 1to2_E 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEee
Q 045363 393 TDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAA 472 (712)
Q Consensus 393 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa 472 (712)
+.++.||++||.. ||+|||.+|+++
T Consensus 184 -----------------------------------------------~~~~~fS~~G~~~--------di~APG~~i~s~ 208 (281)
T 1to2_E 184 -----------------------------------------------NQRASFSSVGPEL--------DVMAPGVSIQST 208 (281)
T ss_dssp -----------------------------------------------SCBCTTCCCSTTC--------CEEEECSSEEEE
T ss_pred -----------------------------------------------CCcCCcCCCCCCc--------eEEecCCCeEee
Confidence 3678899999865 999999999999
Q ss_pred ecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCc
Q 045363 473 YSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINP 552 (712)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~ 552 (712)
++. +.|..++|||||||+|||++|||+|++|+|++++||++|++||+++. .+..||||+||+
T Consensus 209 ~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g-----~~~~~G~G~v~~ 270 (281)
T 1to2_E 209 LPG-------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG-----DSFYYGKGLINV 270 (281)
T ss_dssp ETT-------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS-----CHHHHTTCBCCH
T ss_pred cCC-------------CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC-----CCCCcccceecH
Confidence 864 35899999999999999999999999999999999999999999985 467899999999
Q ss_pred cccCCC
Q 045363 553 TKAVHP 558 (712)
Q Consensus 553 ~~A~~~ 558 (712)
.+|+++
T Consensus 271 ~~a~~~ 276 (281)
T 1to2_E 271 QAAAQH 276 (281)
T ss_dssp HHHTSS
T ss_pred HHHhhh
Confidence 999985
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=429.38 Aligned_cols=267 Identities=28% Similarity=0.385 Sum_probs=228.0
Q ss_pred CCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCC
Q 045363 78 RTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157 (712)
Q Consensus 78 ~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~ 157 (712)
..|.+..+++..+|+.. +|+||+|+|||||||++||+|.+ +++..++| .++.
T Consensus 11 ~~w~l~~i~~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~-------------------------~~~~~~~~-~~~~- 62 (279)
T 1thm_A 11 RQYGPQKIQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAG-------------------------KVVGGWDF-VDND- 62 (279)
T ss_dssp HCCHHHHTTHHHHHTTC-CCTTCEEEEEESCCCTTCTTTTT-------------------------TEEEEEET-TTTB-
T ss_pred cccChhhCChHHHHhcC-CCCCCEEEEEccCCCCCCcchhc-------------------------Cccccccc-cCCC-
Confidence 46777777778999987 79999999999999999999964 34556667 4331
Q ss_pred CCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCc
Q 045363 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVD 236 (712)
Q Consensus 158 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~d 236 (712)
..+.|..+|||||||||+|...++.+ +.||||+|+|+.+|+++..+ ++..++++||+||++++++
T Consensus 63 ------~~~~d~~gHGT~vAgiia~~~~n~~g--------~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~ 128 (279)
T 1thm_A 63 ------STPQNGNGHGTHCAGIAAAVTNNSTG--------IAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAK 128 (279)
T ss_dssp ------SCCCCSSSHHHHHHHHHHCCCSSSSS--------CCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCS
T ss_pred ------CCCCCCCCcHHHHHHHHhCccCCCCc--------cEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCC
Confidence 34578899999999999998755432 28999999999999998766 7788999999999999999
Q ss_pred EEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeee
Q 045363 237 LISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGI 316 (712)
Q Consensus 237 VIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 316 (712)
|||||||... ....+..++.++.++|+++|+||||+|.....++...+++|+|||++.+
T Consensus 129 Vin~S~G~~~---~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------ 187 (279)
T 1thm_A 129 VISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN------------------ 187 (279)
T ss_dssp EEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT------------------
T ss_pred EEEEecCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC------------------
Confidence 9999999863 2456777788899999999999999998777788888999999986532
Q ss_pred eeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcc
Q 045363 317 SINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIA 396 (712)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 396 (712)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCC
Q 045363 397 IATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSEL 476 (712)
Q Consensus 397 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 476 (712)
+.++.||++|+.. ||+|||.+|+++++.
T Consensus 188 -------------------------------------------~~~~~fS~~G~~~--------dv~APG~~i~s~~~~- 215 (279)
T 1thm_A 188 -------------------------------------------DNKSSFSTYGSWV--------DVAAPGSSIYSTYPT- 215 (279)
T ss_dssp -------------------------------------------SCBCTTCCCCTTC--------CEEEECSSEEEEETT-
T ss_pred -------------------------------------------CCcCCcCCCCCce--------EEEEcCCCeEEEeCC-
Confidence 3678899999865 999999999999864
Q ss_pred ccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccC
Q 045363 477 ASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556 (712)
Q Consensus 477 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~ 556 (712)
..|..++|||||||||||++||| ++|.+++++||++|++||+++... ...||+|+||+.+|+
T Consensus 216 ------------~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~----~~~~G~G~vn~~~A~ 277 (279)
T 1thm_A 216 ------------STYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT----GTYWAKGRVNAYKAV 277 (279)
T ss_dssp ------------TEEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB----TTTBSSEECCHHHHH
T ss_pred ------------CCEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC----CccccCCeeCHHHHh
Confidence 35999999999999999999999 589999999999999999998763 367999999999997
Q ss_pred C
Q 045363 557 H 557 (712)
Q Consensus 557 ~ 557 (712)
+
T Consensus 278 ~ 278 (279)
T 1thm_A 278 Q 278 (279)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-54 Score=486.82 Aligned_cols=322 Identities=18% Similarity=0.201 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHhCCccccccceEEEecceeeeEEEEcCHHHHHHhhcCCCeEEEEeCeeeecccCCCccccccchh---
Q 045363 12 AVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSEEESVVSVFENTRRKLHTTRTWDFLGMSEK--- 88 (712)
Q Consensus 12 ~~~~h~~~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~i~~l~~~p~V~~V~~~~~~~~~~~~s~~~~~~~~~--- 88 (712)
....|.++|...... .....++++.|+++|+||+++++++++++|+++|+|++|++++.+..+ ..+|.+..+...
T Consensus 90 ~~~~~~~~l~a~~~~-~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~-~~pWgL~~i~~~~~~ 167 (692)
T 2p4e_P 90 QSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQ-SIPWNLERITPPRYR 167 (692)
T ss_dssp HHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC----------------
T ss_pred HHHHHHHHHHHHHhh-cccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccC-CCCcchhhccccccc
Confidence 334455555443321 122468999999999999999999999999999999999999988653 345766555322
Q ss_pred -hhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCC
Q 045363 89 -LQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPV 167 (712)
Q Consensus 89 -~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 167 (712)
..|..+.+|+||+|+|||||||++||+|.+... |. +|+ .+ .+.. . ......+.
T Consensus 168 ~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~-------~~~----------~~-~d~d-g-~~~~~~~~ 221 (692)
T 2p4e_P 168 ADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VT-------DFE----------NV-PEED-G-TRFHRQAS 221 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ec-------ccc----------cc-cCCC-C-CcccCCCC
Confidence 368888999999999999999999999986421 10 010 00 0000 0 00012456
Q ss_pred CCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhC------CCcEEEe
Q 045363 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGD------GVDLISI 240 (712)
Q Consensus 168 d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~------g~dVIN~ 240 (712)
|.+||||||||||+|+. .||||+|+|+++|+++..| ++.+++++||+|++++ +++||||
T Consensus 222 D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g~~VINm 287 (692)
T 2p4e_P 222 KCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLL 287 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCCceEEEe
Confidence 88999999999999874 7999999999999998876 7888999999999986 8999999
Q ss_pred ccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCC-ccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeee
Q 045363 241 SIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQG-TVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISIN 319 (712)
Q Consensus 241 S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~ 319 (712)
|||+.. ...+..++.++.++|++||+||||+|.+.. ..++..|++|+|||++.+...
T Consensus 288 SlGg~~----s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~------------------ 345 (692)
T 2p4e_P 288 PLAGGY----SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP------------------ 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCC----cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCc------------------
Confidence 999753 344555666888999999999999997653 346778999999997643100
Q ss_pred cCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccce
Q 045363 320 TFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIAT 399 (712)
Q Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 399 (712)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccC
Q 045363 400 LIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASV 479 (712)
Q Consensus 400 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 479 (712)
...-+.||+|||. |||+|||++|+++++..
T Consensus 346 ---------------------------------------a~~ss~fSn~G~~--------vDI~APG~~I~St~~~~--- 375 (692)
T 2p4e_P 346 ---------------------------------------VTLGTLGTNFGRC--------VDLFAPGEDIIGASSDC--- 375 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------cccccccCCCCCc--------eeEEecCCcEEeeccCC---
Confidence 0011238999974 59999999999998741
Q ss_pred CCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCC
Q 045363 480 TGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMK 535 (712)
Q Consensus 480 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~ 535 (712)
...|..++|||||||||||++|||++++|+|+|++||++|++||.+..
T Consensus 376 --------~~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~~~ 423 (692)
T 2p4e_P 376 --------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDV 423 (692)
T ss_dssp --------------------------------------------------------
T ss_pred --------CCceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccc
Confidence 135899999999999999999999999999999999999999998753
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-51 Score=440.28 Aligned_cols=275 Identities=26% Similarity=0.388 Sum_probs=225.0
Q ss_pred cCCCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCC
Q 045363 76 TTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDN 155 (712)
Q Consensus 76 ~~~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~ 155 (712)
....|.+-.+++..+|+.+++|+||+|||||||||++||+|.+ ++...++| ..+
T Consensus 19 ~~~~w~l~~i~~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~-------------------------~~~~~~~~-~~~ 72 (327)
T 2x8j_A 19 SEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAE-------------------------RIIGGVNL-TTD 72 (327)
T ss_dssp BSCCHHHHHTTHHHHHHHHGGGTTCEEEEEESCCCTTCTTTGG-------------------------GEEEEEEC-SSG
T ss_pred cccCcchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCChhHhh-------------------------cccCCccc-cCC
Confidence 3457877777778999999999999999999999999999964 34556666 433
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHh--
Q 045363 156 ALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIG-- 232 (712)
Q Consensus 156 ~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~-- 232 (712)
+. .+.....|..+|||||||||+|.. ++. | +.||||+|+|+.+|+++..+ ++.+++++||+||++
T Consensus 73 ~~---~~~~~~~d~~gHGT~VAgiia~~~-~~~---g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~ 140 (327)
T 2x8j_A 73 YG---GDETNFSDNNGHGTHVAGTVAAAE-TGS---G-----VVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWR 140 (327)
T ss_dssp GG---GCTTCCCCSSSHHHHHHHHHHCCC-CSS---B-----CCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCC
T ss_pred CC---CCCCCCCCCCCchHHHHHHHhccC-CCC---C-----cEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhc
Confidence 21 111235688999999999999984 221 1 28999999999999998776 778899999999999
Q ss_pred ----CCCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCC-----CccccCCCceEEEceeccCceeEE
Q 045363 233 ----DGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ-----GTVENVAPWIMTVAASSIDRKFVT 303 (712)
Q Consensus 233 ----~g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~ 303 (712)
.+++|||||||... ....+..++..+.++|++||+||||+|... ...+...+++|+|||++.+
T Consensus 141 ~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~~----- 212 (327)
T 2x8j_A 141 GPKGEQMRIITMSLGGPT---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD----- 212 (327)
T ss_dssp CTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECTT-----
T ss_pred ccccCCceEEEECCCcCC---CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECCC-----
Confidence 89999999999864 245677777888999999999999999652 4556777999999987532
Q ss_pred EEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCce
Q 045363 304 AVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGA 383 (712)
Q Consensus 304 ~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~ 383 (712)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEE
Q 045363 384 GTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIA 463 (712)
Q Consensus 384 g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~ 463 (712)
+.++.||++||.. ||+
T Consensus 213 --------------------------------------------------------~~~~~fS~~G~~~--------di~ 228 (327)
T 2x8j_A 213 --------------------------------------------------------LRLSDFTNTNEEI--------DIV 228 (327)
T ss_dssp --------------------------------------------------------CCBSCC---CCCC--------SEE
T ss_pred --------------------------------------------------------CCCCCccCCCCCc--------eEe
Confidence 3678999999854 999
Q ss_pred eCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhh-----CCCCCHHHHHHHHHccccCCCCCC
Q 045363 464 APGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSF-----HPDWSPAAIKSALMTTATPMKTKS 538 (712)
Q Consensus 464 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-----~P~lsp~~ik~~L~~TA~~~~~~~ 538 (712)
|||.+|+++++. +.|..++|||||||+|||++|||+|+ +|.|++.+||++|++||+++..
T Consensus 229 APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~-- 293 (327)
T 2x8j_A 229 APGVGIKSTYLD-------------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGF-- 293 (327)
T ss_dssp EECSSEEEECST-------------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS--
T ss_pred cCcCceEeecCC-------------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC--
Confidence 999999999764 35899999999999999999999999 9999999999999999999864
Q ss_pred CCCCCCCCCCCcCccccCC
Q 045363 539 DDAELASGSGQINPTKAVH 557 (712)
Q Consensus 539 ~~~~~~~G~G~in~~~A~~ 557 (712)
++..+|+|+||+.+|++
T Consensus 294 --~~~~~G~G~vd~~~A~~ 310 (327)
T 2x8j_A 294 --TAQAEGNGFLTLDLVER 310 (327)
T ss_dssp --CHHHHTTCEECTTHHHH
T ss_pred --CCCceeeeEECHHHHHH
Confidence 57789999999999988
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-53 Score=457.55 Aligned_cols=305 Identities=19% Similarity=0.206 Sum_probs=198.1
Q ss_pred ccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCcccc-CCcee----EEeEeccCCCC
Q 045363 82 FLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTR-CNKKV----IGARYYNLDNA 156 (712)
Q Consensus 82 ~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~-~n~ki----~g~~~~~~~~~ 156 (712)
..|+. .+|+.+..|++|+|||||||||++||+|++....+....|+..++....... .+..+ .....+ ....
T Consensus 17 ipG~~--~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 93 (357)
T 4h6x_A 17 IPGLA--DLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEK-EEAL 93 (357)
T ss_dssp STTHH--HHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHHTCCSHHH-HHHH
T ss_pred ccCHH--HHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCcccccccc-cccc
Confidence 33555 8999999999999999999999999999986655555666654432210000 00000 000000 0000
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC------CChHHHHHHHHHH
Q 045363 157 LDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG------CADMDILAAFDDA 230 (712)
Q Consensus 157 ~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g------~~~~~i~~ai~~a 230 (712)
.....+...+.|.+||||||||||+|+.++ | +.||||+|+|+.+|++.... ....+++++|+||
T Consensus 94 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~-----g-----~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a 163 (357)
T 4h6x_A 94 EAVIPDTKDRIVLNDHACHVTSTIVGQEHS-----P-----VFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLA 163 (357)
T ss_dssp HHHCTTTHHHHHHHHHHHHHHHHHHCCTTS-----S-----CCCSCTTSEEEEEECTTC----------CHHHHHHHHHH
T ss_pred ccccCCCCCCcCCCCcHHHHHHHHhccCCC-----C-----ceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHH
Confidence 000011123446779999999999997532 1 28999999999999975422 3456789999999
Q ss_pred HhCCCcEEEeccCCCC-CCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCC
Q 045363 231 IGDGVDLISISIGGPS-RSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGN 309 (712)
Q Consensus 231 ~~~g~dVIN~S~G~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~ 309 (712)
++.|++|||||||... .....+.+..++.++.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 164 ~~~g~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~----------- 232 (357)
T 4h6x_A 164 LELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD----------- 232 (357)
T ss_dssp HHTTCSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECTT-----------
T ss_pred HHcCCCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEeccC-----------
Confidence 9999999999999863 2344567778888999999999999999998888888888999999986532
Q ss_pred CceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEe
Q 045363 310 GMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAV 389 (712)
Q Consensus 310 g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~ 389 (712)
T Consensus 233 -------------------------------------------------------------------------------- 232 (357)
T 4h6x_A 233 -------------------------------------------------------------------------------- 232 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcE
Q 045363 390 DAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDI 469 (712)
Q Consensus 390 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I 469 (712)
+.++.||+||+.. .||||+|||.+|
T Consensus 233 --------------------------------------------------~~~~~fSn~G~~~-----~~~di~APG~~i 257 (357)
T 4h6x_A 233 --------------------------------------------------GTPCHFSNWGGNN-----TKEGILAPGEEI 257 (357)
T ss_dssp --------------------------------------------------SSBCTTCC---CT-----TTTEEEEECSSE
T ss_pred --------------------------------------------------CcccccccCCCCC-----CccceeecCCCe
Confidence 3678999999754 589999999999
Q ss_pred EeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhh----CCCCCHHHHHHHHHccccCCCCCCCCCCCCC
Q 045363 470 LAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSF----HPDWSPAAIKSALMTTATPMKTKSDDAELAS 545 (712)
Q Consensus 470 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~ 545 (712)
+++++.. ..|..++|||||||||||++|||+++ +|.|+++|||++|++||+++.......+.+|
T Consensus 258 ~s~~~~~------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~~~~~~~~ 325 (357)
T 4h6x_A 258 LGAQPCT------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVVEEPERC 325 (357)
T ss_dssp EECCTTC------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--------------C
T ss_pred EeccCCC------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCCCCCcccc
Confidence 9997641 34778999999999999999999964 5689999999999999999876533356789
Q ss_pred CCCCcCccccCC
Q 045363 546 GSGQINPTKAVH 557 (712)
Q Consensus 546 G~G~in~~~A~~ 557 (712)
|+|+||+.+|++
T Consensus 326 G~G~vn~~~A~~ 337 (357)
T 4h6x_A 326 LRGFVNIPGAMK 337 (357)
T ss_dssp TTCBCCHHHHHH
T ss_pred eeEEecHHHHHH
Confidence 999999999987
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-50 Score=427.14 Aligned_cols=289 Identities=27% Similarity=0.349 Sum_probs=230.1
Q ss_pred cCCCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCC
Q 045363 76 TTRTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDN 155 (712)
Q Consensus 76 ~~~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~ 155 (712)
...+|.+..+.+..+|+.+++|+||+|+|||||||++||+|.+. +...++| ...
T Consensus 4 ~~~~W~l~~i~~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~-------------------------~~~~~~~-~~~ 57 (310)
T 2ixt_A 4 QQIPWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN-------------------------VEQCKDF-TGA 57 (310)
T ss_dssp CSSCHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT-------------------------EEEEEES-SSS
T ss_pred ccCCCchhhcCchhhhhccCCCCCcEEEEEecCCCCCCHHHhhc-------------------------ccccccc-cCC
Confidence 44678777777779999999999999999999999999999642 4455566 332
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCC
Q 045363 156 ALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDG 234 (712)
Q Consensus 156 ~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g 234 (712)
.. .......|..+|||||||||+|...++. ..+.||||+|+|+.+|+++..+ ++.+++++||+||++++
T Consensus 58 ~~---~~~~~~~d~~gHGT~vAgiia~~~~~n~-------~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~ 127 (310)
T 2ixt_A 58 TT---PINNSCTDRNGHGTHVAGTALADGGSDQ-------AGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQA 127 (310)
T ss_dssp SS---CEETCCCCSSSHHHHHHHHHHCBCCTTS-------CSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CC---CCCCCCCCCCCCHHHHHHHHhccCCCCC-------CceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhh
Confidence 10 1112346789999999999999852210 1128999999999999998766 67889999999999998
Q ss_pred C-----cEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCC--CCccccCCCceEEEceeccCceeEEEEEe
Q 045363 235 V-----DLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPY--QGTVENVAPWIMTVAASSIDRKFVTAVKL 307 (712)
Q Consensus 235 ~-----dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~--~~~~~~~~p~vitVga~~~~~~~~~~~~~ 307 (712)
+ +|||||||... ....+..++.++.++|++||+||||+|.. ....+...|++|+|||++....
T Consensus 128 ~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~------- 197 (310)
T 2ixt_A 128 TATGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ------- 197 (310)
T ss_dssp HHHTCCEEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE-------
T ss_pred hccCCCeEEEEcCCCCC---CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEecccccc-------
Confidence 8 99999999864 24566777778899999999999999976 3456677899999998752100
Q ss_pred CCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEE
Q 045363 308 GNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIV 387 (712)
Q Consensus 308 ~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~ 387 (712)
T Consensus 198 -------------------------------------------------------------------------------- 197 (310)
T 2ixt_A 198 -------------------------------------------------------------------------------- 197 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCC----CCcccCcEE
Q 045363 388 AVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKIT----LNILKPDIA 463 (712)
Q Consensus 388 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~----~~~lKPDI~ 463 (712)
.....++.||++||.... ..+.||||+
T Consensus 198 -------------------------------------------------~g~~~~~~~S~~G~~~~~g~~~~~~~~~di~ 228 (310)
T 2ixt_A 198 -------------------------------------------------NGTYRVADYSSRGYISTAGDYVIQEGDIEIS 228 (310)
T ss_dssp -------------------------------------------------TTEEEECTTSCCCCTTTTTSSSCCTTCCCEE
T ss_pred -------------------------------------------------CCCeeeccccCCCCccCCccccccCCCeeEE
Confidence 000157889999985311 134599999
Q ss_pred eCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCC-----C
Q 045363 464 APGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTK-----S 538 (712)
Q Consensus 464 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~-----~ 538 (712)
|||.+|+++++. ..|..++|||||||||||++|||+|++|+|++++||++|++||++.+.. .
T Consensus 229 ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~a~ 295 (310)
T 2ixt_A 229 APGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAA 295 (310)
T ss_dssp EECSSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBSTTCC
T ss_pred CCCCCEeeecCC-------------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCCcccc
Confidence 999999999764 3599999999999999999999999999999999999999999998743 2
Q ss_pred CCCCCCCCCCCcCc
Q 045363 539 DDAELASGSGQINP 552 (712)
Q Consensus 539 ~~~~~~~G~G~in~ 552 (712)
+.++..+|||++|+
T Consensus 296 ~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 296 IGDDYASGFGFARV 309 (310)
T ss_dssp SSSBTTTBTCBCCC
T ss_pred cCCccccccceeec
Confidence 44788999999986
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-51 Score=425.09 Aligned_cols=264 Identities=23% Similarity=0.268 Sum_probs=210.4
Q ss_pred CCCC-CCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCC
Q 045363 94 SKAQ-SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGH 172 (712)
Q Consensus 94 ~~~G-~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gH 172 (712)
.++| +||+|||||||||++||+|.+.. +..+++.... ......|.+||
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~-------------------------~~~~~~~~~~------~~~~d~~~~gH 51 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGAD-------------------------LTVLPTLAPT------AARSDGFMSAH 51 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTCE-------------------------EEECCCSSCC------CCCTTCHHHHH
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCCe-------------------------eecCcCCCCC------CCCCCCCCCCc
Confidence 4678 79999999999999999997531 1112220111 11222345789
Q ss_pred hhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHhCCCcEEEeccCCCC-CCC
Q 045363 173 GTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG--CADMDILAAFDDAIGDGVDLISISIGGPS-RSY 249 (712)
Q Consensus 173 GThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~S~G~~~-~~~ 249 (712)
||||||||+|+.++ | +.||||+|+|+.+|++.+.+ .+..+++++|+||++++++|||||||... ...
T Consensus 52 GT~VAGiiag~~~~-----~-----~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~ 121 (282)
T 3zxy_A 52 GTHVASIIFGQPET-----S-----VPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFGE 121 (282)
T ss_dssp HHHHHHHHHCCTTS-----S-----SCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSC
T ss_pred ccceeehhhccCCc-----e-----eeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCcccccccc
Confidence 99999999997532 1 28999999999999986543 67788999999999999999999999763 223
Q ss_pred ccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCCCCceee
Q 045363 250 FDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYP 329 (712)
Q Consensus 250 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~ 329 (712)
....+..++..+.++|+++|+||||+|......+...|++|+|||++.+
T Consensus 122 ~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------- 170 (282)
T 3zxy_A 122 ADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH------------------------------- 170 (282)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT-------------------------------
T ss_pred ccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC-------------------------------
Confidence 4556777888899999999999999998888888889999999986532
Q ss_pred eEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChh
Q 045363 330 LTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPE 409 (712)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~ 409 (712)
T Consensus 171 -------------------------------------------------------------------------------- 170 (282)
T 3zxy_A 171 -------------------------------------------------------------------------------- 170 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCcc
Q 045363 410 VGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIV 489 (712)
Q Consensus 410 ~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 489 (712)
+.++.||+||+.. .||||+|||.+|+++++. +
T Consensus 171 ------------------------------~~~~~~S~~~~~~-----~~~di~ApG~~i~s~~~~-------------~ 202 (282)
T 3zxy_A 171 ------------------------------GHPLDFSNWGSTY-----EQQGILAPGEDILGAKPG-------------G 202 (282)
T ss_dssp ------------------------------SCBCSSSCCCHHH-----HHHEEEEECSSEEEECTT-------------S
T ss_pred ------------------------------CccccccCCCCCc-----cccceeccCcceeeecCC-------------C
Confidence 3678899998653 688999999999999874 3
Q ss_pred ceEeeecccchhHHHHHHHHHHHhhC----CCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccCC
Q 045363 490 PFNILSGTSMACPHAAAAAAYVKSFH----PDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAVH 557 (712)
Q Consensus 490 ~y~~~sGTSmAaP~VAG~aALl~~~~----P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~~ 557 (712)
.|..++|||||||||||++|||++++ |.++|++||++|++||++++...+.....+|+|+||+.+|++
T Consensus 203 ~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 203 GTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDDAPEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC-------CGGGTTCBCCHHHHHH
T ss_pred ceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCCCCCccCceeeeEeCHHHHHH
Confidence 59999999999999999999999874 789999999999999998876544466789999999999987
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=430.55 Aligned_cols=275 Identities=28% Similarity=0.409 Sum_probs=227.2
Q ss_pred CCCccccccchhhhccCCCCCC--CcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCC
Q 045363 77 TRTWDFLGMSEKLQKRSSKAQS--NIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLD 154 (712)
Q Consensus 77 ~~s~~~~~~~~~~~~~~~~~G~--gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~ 154 (712)
..+|.+..+++..+|+.+ +|+ ||+|||||||||++||+|.+ ++...++| ..
T Consensus 7 ~~~W~l~~i~~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~-------------------------~~~~~~~~-~~ 59 (320)
T 2z30_A 7 TIPWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAA-------------------------NIAWCVST-LR 59 (320)
T ss_dssp CCCHHHHHTTCGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGG-------------------------GEEEEEEC-GG
T ss_pred CCCCChhhcChHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhc-------------------------ccccCccc-cC
Confidence 457877777778999998 999 99999999999999999964 23444555 32
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhC
Q 045363 155 NALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGD 233 (712)
Q Consensus 155 ~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~ 233 (712)
+.. ........|..+|||||||||+|.. ++. | +.||||+|+|+.+|+++..+ ++.++++++|+||++.
T Consensus 60 ~~~--~~~~~~~~d~~gHGT~vAgiia~~~-n~~---g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~ 128 (320)
T 2z30_A 60 GKV--STKLRDCADQNGHGTHVIGTIAALN-NDI---G-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILG 128 (320)
T ss_dssp GCC--BCCHHHHBCSSSHHHHHHHHHHCCS-SSB---S-----CCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHT
T ss_pred Ccc--CCCCCCCCCCCCCHHHHHHHHHccc-CCC---c-----eEeeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHhC
Confidence 210 0001123578999999999999973 221 1 28999999999999998776 6788999999999987
Q ss_pred --------------------CCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEc
Q 045363 234 --------------------GVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVA 293 (712)
Q Consensus 234 --------------------g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVg 293 (712)
+++|||||||... ....+..++.++.++|++||+||||+|.....++...|++|+||
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vg 205 (320)
T 2z30_A 129 PDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVG 205 (320)
T ss_dssp TTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEE
T ss_pred cccccccccccccccccccCCceEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEE
Confidence 9999999999864 24566677778899999999999999988778888899999999
Q ss_pred eeccCceeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCch
Q 045363 294 ASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQ 373 (712)
Q Consensus 294 a~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~ 373 (712)
|++.+
T Consensus 206 a~~~~--------------------------------------------------------------------------- 210 (320)
T 2z30_A 206 AIDSN--------------------------------------------------------------------------- 210 (320)
T ss_dssp EECTT---------------------------------------------------------------------------
T ss_pred eeCCC---------------------------------------------------------------------------
Confidence 87532
Q ss_pred hHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcC
Q 045363 374 DYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKI 453 (712)
Q Consensus 374 ~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~ 453 (712)
+.++.||++||
T Consensus 211 ------------------------------------------------------------------~~~~~~S~~g~--- 221 (320)
T 2z30_A 211 ------------------------------------------------------------------DNIASFSNRQP--- 221 (320)
T ss_dssp ------------------------------------------------------------------SCBCTTSCSSC---
T ss_pred ------------------------------------------------------------------CCcCcccCCCC---
Confidence 36788999986
Q ss_pred CCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhC-------------CCCCH
Q 045363 454 TLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFH-------------PDWSP 520 (712)
Q Consensus 454 ~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-------------P~lsp 520 (712)
+|+|||.+|+++++. ..|..++|||||||||||++|||+|++ |+|++
T Consensus 222 -------~v~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~ 281 (320)
T 2z30_A 222 -------EVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISK 281 (320)
T ss_dssp -------SEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCST
T ss_pred -------CEEeCCCCeEEeccC-------------CCeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCH
Confidence 789999999999864 358999999999999999999999998 99999
Q ss_pred HHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccCCC
Q 045363 521 AAIKSALMTTATPMKTKSDDAELASGSGQINPTKAVHP 558 (712)
Q Consensus 521 ~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~~~ 558 (712)
.+||++|++||+++... ..+..||||+||+.+|++.
T Consensus 282 ~~v~~~L~~ta~~~~~~--g~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 282 NTVRGILHITADDLGPT--GWDADYGYGVVRAALAVQA 317 (320)
T ss_dssp TSHHHHHHHHSBCCSSS--SSBTTTBTCBCCHHHHHHH
T ss_pred HHHHHHHHhhCccCCCC--CCCCCcCCceeCHHHHHHH
Confidence 99999999999988652 2577899999999999873
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=437.23 Aligned_cols=281 Identities=21% Similarity=0.184 Sum_probs=227.0
Q ss_pred CCCccccccchhhhccCCCCCC--CcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCC
Q 045363 77 TRTWDFLGMSEKLQKRSSKAQS--NIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLD 154 (712)
Q Consensus 77 ~~s~~~~~~~~~~~~~~~~~G~--gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~ 154 (712)
..+|.+..++...+|+. .+|+ ||+||||||||| +||+|.+ ++...++|+.+
T Consensus 22 ~~~W~l~~i~~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~-------------------------~~~~~~~~~~~ 74 (347)
T 2iy9_A 22 EKPWYFDAIGLTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSD-------------------------SEFAKFSFTQD 74 (347)
T ss_dssp -CCHHHHHHTCCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTT-------------------------CEEEEEECBTT
T ss_pred ccCcchhhCChHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhc-------------------------CcccCCcccCC
Confidence 45677766666799998 8999 999999999999 9999964 24455666233
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhC-
Q 045363 155 NALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGD- 233 (712)
Q Consensus 155 ~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~- 233 (712)
+. +.....+.|..+|||||||||+|+. |. .||||+|+|+.+|+++..+.. ++++||+||+++
T Consensus 75 ~~---~~~~~~~~d~~gHGT~vAgiia~~~-------g~-----~GvAp~a~l~~~~v~~~~~~~--~~~~ai~~a~~~~ 137 (347)
T 2iy9_A 75 GS---PFPVKKSEALYIHGTAMASLIASRY-------GI-----YGVYPHALISSRRVIPDGVQD--SWIRAIESIMSNV 137 (347)
T ss_dssp CC---SSCCSSSHHHHHHHHHHHHHHHCSS-------SS-----CCSSTTCEEEEEECCSSBCTT--HHHHHHHHHHTCT
T ss_pred CC---CCCCCCCCCCCCcHHHHHHHHhccc-------CC-----cccCCCCEEEEEEEecCCCHH--HHHHHHHHHHhhh
Confidence 21 1111245668899999999999871 22 899999999999999775533 999999999999
Q ss_pred -----CCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCC-------CCccccCCC----------ceEE
Q 045363 234 -----GVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPY-------QGTVENVAP----------WIMT 291 (712)
Q Consensus 234 -----g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~-------~~~~~~~~p----------~vit 291 (712)
+++|||||||..........+..++..+.++|++||+||||+|.. ...++...+ ++|+
T Consensus 138 ~~~~~~~~Vin~S~G~~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~ 217 (347)
T 2iy9_A 138 FLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIR 217 (347)
T ss_dssp TSCTTEEEEEEESSCBCCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEE
T ss_pred hcccCCceEEEeccccCCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEE
Confidence 999999999976434456778888889999999999999999975 345667778 9999
Q ss_pred Eceecc--CceeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEec
Q 045363 292 VAASSI--DRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLG 369 (712)
Q Consensus 292 Vga~~~--~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~ 369 (712)
|||++. +...
T Consensus 218 Vga~~~~~~g~~-------------------------------------------------------------------- 229 (347)
T 2iy9_A 218 VAALAQYRKGET-------------------------------------------------------------------- 229 (347)
T ss_dssp EEEECCCCTTSC--------------------------------------------------------------------
T ss_pred EEEcccCCCCce--------------------------------------------------------------------
Confidence 999764 2100
Q ss_pred CCchhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCC
Q 045363 370 SGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRG 449 (712)
Q Consensus 370 ~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~G 449 (712)
. .....++.||++|
T Consensus 230 ------~------------------------------------------------------------~~~~~~~~fS~~G 243 (347)
T 2iy9_A 230 ------P------------------------------------------------------------VLHGGGITGSRFG 243 (347)
T ss_dssp ------C------------------------------------------------------------CBCCCSSSCBCBC
T ss_pred ------e------------------------------------------------------------cccCCCCCCCCCC
Confidence 0 0012467999999
Q ss_pred CCcCCCCcccCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHc
Q 045363 450 PQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMT 529 (712)
Q Consensus 450 p~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~ 529 (712)
|+ ||||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++
T Consensus 244 ~~-------~~di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~ 303 (347)
T 2iy9_A 244 NN-------WVDIAAPGQNITFLRPD-------------AKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLE 303 (347)
T ss_dssp TT-------TCSEEEECSSEEEECTT-------------SCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CC-------CCEEEeCCCCeEeecCC-------------CCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 84 67999999999999874 35999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCcCccccCCC
Q 045363 530 TATPMKTKSDDAELASGSGQINPTKAVHP 558 (712)
Q Consensus 530 TA~~~~~~~~~~~~~~G~G~in~~~A~~~ 558 (712)
||+++... .+..+|+|+||+.+|++.
T Consensus 304 tA~~~~~~---~~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 304 SADKYPSL---VDKVTEGRVLNAEKAISM 329 (347)
T ss_dssp HSEECGGG---TTTSGGGEECCHHHHHHH
T ss_pred hCccCCCC---CCccccCCEecHHHHHHH
Confidence 99998764 347899999999999984
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-50 Score=429.16 Aligned_cols=307 Identities=24% Similarity=0.323 Sum_probs=228.1
Q ss_pred CCcccc---ccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCcccc---CCceeEEeEec
Q 045363 78 RTWDFL---GMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTR---CNKKVIGARYY 151 (712)
Q Consensus 78 ~s~~~~---~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~---~n~ki~g~~~~ 151 (712)
.+|.+. ++++..+|+.+++|+||+||||||||+ +||+|.+.... .|+-.......+.. .........++
T Consensus 9 ~qW~l~~~~~i~~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 83 (340)
T 3lpc_A 9 EQWHYFDRYGVKADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP----GYDFISNSQISLDGDGRDADPFDEGDWF 83 (340)
T ss_dssp GCHHHHSTTSCCHHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC----CEECCCCHHHHCSSSSSBSCCBCCCCCB
T ss_pred hccCCCCcCCCCHHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc----CccccCCccccccCCCccCCcccccccc
Confidence 456653 366679999999999999999999998 99999754211 01000000000000 00000000000
Q ss_pred cCC-CCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHH
Q 045363 152 NLD-NALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDA 230 (712)
Q Consensus 152 ~~~-~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a 230 (712)
.. .....+.+.....|..||||||||||+|...++.++ .||||+|+|+.+|+++..++...+++++|+||
T Consensus 84 -~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~~~g~--------~GvAp~a~l~~~~v~~~~~~~~~~~~~ai~~a 154 (340)
T 3lpc_A 84 -DNWACGGRPDPRKERSDSSWHGSHVAGTIAAVTNNRIGV--------AGVAYGAKVVPVRALGRCGGYDSDISDGLYWA 154 (340)
T ss_dssp -CTTTTSCTTCGGGSCBCCCCHHHHHHHHHHCCCSSSSSC--------CCTTTTSEEEEEECCBTTBCCHHHHHHHHHHH
T ss_pred -ccccccCCCCcccCCCCCCCCHHHHHHHHHccCCCCCcc--------eeecCCCEEEEEEEecCCCCcHHHHHHHHHHH
Confidence 00 000001122345788999999999999987654332 89999999999999988778889999999999
Q ss_pred Hh----------CCCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCC-ccccCCCceEEEceeccCc
Q 045363 231 IG----------DGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQG-TVENVAPWIMTVAASSIDR 299 (712)
Q Consensus 231 ~~----------~g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~ 299 (712)
++ .+++|||||||... .....+..++.++.++|++||+||||+|.... ..+...+++|+|||++.+
T Consensus 155 ~~~~~~~~~~~~~~~~Vin~S~G~~~--~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~- 231 (340)
T 3lpc_A 155 AGGRIAGIPENRNPAKVINMSLGSDG--QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSR- 231 (340)
T ss_dssp HTCCCTTSCCCSSCCSEEEECCCEES--CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECTT-
T ss_pred hcccccccccccCCCeEEEeCcCCCC--CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCCC-
Confidence 98 89999999999763 23455667777889999999999999987643 456778999999986532
Q ss_pred eeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhc
Q 045363 300 KFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDR 379 (712)
Q Consensus 300 ~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~ 379 (712)
T Consensus 232 -------------------------------------------------------------------------------- 231 (340)
T 3lpc_A 232 -------------------------------------------------------------------------------- 231 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCccc
Q 045363 380 LQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILK 459 (712)
Q Consensus 380 ~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lK 459 (712)
+.++.||++|| |
T Consensus 232 ------------------------------------------------------------~~~~~~S~~g~--------~ 243 (340)
T 3lpc_A 232 ------------------------------------------------------------GIRASFSNYGV--------D 243 (340)
T ss_dssp ------------------------------------------------------------SSBCTTCCBST--------T
T ss_pred ------------------------------------------------------------CCcCCCCCCCC--------C
Confidence 36789999997 4
Q ss_pred CcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhh-C---CCCCHHHHHHHHHccccCCC
Q 045363 460 PDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSF-H---PDWSPAAIKSALMTTATPMK 535 (712)
Q Consensus 460 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-~---P~lsp~~ik~~L~~TA~~~~ 535 (712)
|||+|||.+|+++++.... ......|..++|||||||||||++|||+|+ + |+|++++||++|++||+++.
T Consensus 244 ~di~ApG~~i~s~~~~~~~------~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~ 317 (340)
T 3lpc_A 244 VDLAAPGQDILSTVDSGTR------RPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFN 317 (340)
T ss_dssp CCEEEECSSEEEEEESCSS------SCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCS
T ss_pred ceEEecCCCeecccCCCCc------CCCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCC
Confidence 5999999999999875211 111245999999999999999999999998 5 99999999999999999986
Q ss_pred CCCCCCCCCCCCCCcCccccCCC
Q 045363 536 TKSDDAELASGSGQINPTKAVHP 558 (712)
Q Consensus 536 ~~~~~~~~~~G~G~in~~~A~~~ 558 (712)
.. .+..+|||+||+.+|++.
T Consensus 318 ~~---~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 318 GR---LDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp SC---CSSCCCSSBCCHHHHHHH
T ss_pred CC---CCCCcccceecHHHHHHH
Confidence 54 677899999999999874
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-50 Score=426.42 Aligned_cols=274 Identities=25% Similarity=0.300 Sum_probs=221.2
Q ss_pred ccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCC
Q 045363 82 FLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNT 161 (712)
Q Consensus 82 ~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~ 161 (712)
+.|++ ++|+.+..++||+|||||||||++||+|.+. .+....+| ..+.
T Consensus 7 i~G~~--~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~------------------------~~~~~~~~-~~~~----- 54 (306)
T 4h6w_A 7 IPGLK--KLWSETRGDPKICVAVLDGIVDQNHPCFIGA------------------------DLTRLPSL-VSGE----- 54 (306)
T ss_dssp CTTHH--HHHHHCSCCTTCEEEEESSCCCTTSGGGTTC------------------------EEEECC------------
T ss_pred CcCHH--HHHhhhCCCCCCEEEEEcCCCCCCChhHcCC------------------------cccCCCcc-cCCC-----
Confidence 34565 8999988789999999999999999999753 22222233 2221
Q ss_pred CCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC--CChHHHHHHHHHHHhCCCcEEE
Q 045363 162 DQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG--CADMDILAAFDDAIGDGVDLIS 239 (712)
Q Consensus 162 ~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN 239 (712)
.....|..+|||||||||+|+.++ .+.||||+|+|+.+|++.+.+ ....++++||+||++++++|||
T Consensus 55 -~~~~~d~~gHGThVAGiiag~~~~----------~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~ 123 (306)
T 4h6w_A 55 -ANANGSMSTHGTHVASIIFGQHDS----------PVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIIN 123 (306)
T ss_dssp -----CCCCHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred -CCCCCCCCCchHHHHHHHHccccC----------CcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeee
Confidence 123446789999999999997532 128999999999999986543 6778899999999999999999
Q ss_pred eccCCCC-CCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeeeee
Q 045363 240 ISIGGPS-RSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISI 318 (712)
Q Consensus 240 ~S~G~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~ 318 (712)
+|||... .......+..++..+.++|+++|+||||+|......+...+++|+|||++..
T Consensus 124 ~s~g~~~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~-------------------- 183 (306)
T 4h6w_A 124 VSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ-------------------- 183 (306)
T ss_dssp ECCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT--------------------
T ss_pred ccccccccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC--------------------
Confidence 9999752 2334566777888999999999999999998887788888999999986532
Q ss_pred ecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccc
Q 045363 319 NTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIA 398 (712)
Q Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 398 (712)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCcc
Q 045363 399 TLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELAS 478 (712)
Q Consensus 399 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~ 478 (712)
+.++.||++|+.. .||||+|||.+|+++.+.
T Consensus 184 -----------------------------------------~~~~~~s~~g~~~-----~~~di~APG~~i~s~~~~--- 214 (306)
T 4h6w_A 184 -----------------------------------------GKPVDFSNWGDAY-----QKQGILAPGKDILGAKPN--- 214 (306)
T ss_dssp -----------------------------------------SCBCSSSCBCHHH-----HHHEEEEECSSEEEECTT---
T ss_pred -----------------------------------------CCccccccccCCc-----CcceeecCCcCcccccCC---
Confidence 3567889998653 688999999999999874
Q ss_pred CCCCCCCCCccceEeeecccchhHHHHHHHHHHHhh----CCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccc
Q 045363 479 VTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSF----HPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTK 554 (712)
Q Consensus 479 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~ 554 (712)
+.|..++|||||||||||++|||+++ +|.|+|++||++|++||+++..........||+|+||+.+
T Consensus 215 ----------~~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~~~~~~~~G~G~ln~~~ 284 (306)
T 4h6w_A 215 ----------GGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKDTDDQSRCLMGKLNILD 284 (306)
T ss_dssp ----------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTTCSCGGGGTTCBCCHHH
T ss_pred ----------CceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCCCCCCCCcceeecCHHH
Confidence 35999999999999999999999864 6999999999999999999876544455679999999999
Q ss_pred cCC
Q 045363 555 AVH 557 (712)
Q Consensus 555 A~~ 557 (712)
|++
T Consensus 285 Av~ 287 (306)
T 4h6w_A 285 AIE 287 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 997
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-49 Score=436.61 Aligned_cols=296 Identities=25% Similarity=0.331 Sum_probs=227.9
Q ss_pred cccccchhhhcc-CCCCCCCcEEEEEcCCCCC------CCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccC
Q 045363 81 DFLGMSEKLQKR-SSKAQSNIIVGLLDTGIWV------ESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNL 153 (712)
Q Consensus 81 ~~~~~~~~~~~~-~~~~G~gv~VgVIDtGid~------~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~ 153 (712)
+.++++ .+|+ .+++|+||+|||||||||. .||+|.+ ++...++| .
T Consensus 6 ~~i~~~--~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~-------------------------~i~~~~~~-~ 57 (434)
T 1wmd_A 6 GIVKAD--VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRG-------------------------KITALYAL-G 57 (434)
T ss_dssp HHTTHH--HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTT-------------------------CEEEEEET-T
T ss_pred hhhCch--hhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCC-------------------------CEeeeccc-c
Confidence 445554 8998 7999999999999999999 7999964 34555666 4
Q ss_pred CCCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCC---ChHHHHHHHHHH
Q 045363 154 DNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGC---ADMDILAAFDDA 230 (712)
Q Consensus 154 ~~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~---~~~~i~~ai~~a 230 (712)
+. ..+.|..||||||||||+|+.. + +.||||+|+|+++|+++..+. ...++.++|++|
T Consensus 58 ~~--------~~~~d~~gHGT~VAgiiag~g~------~-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a 118 (434)
T 1wmd_A 58 RT--------NNANDTNGHGTHVAGSVLGNGS------T-----NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQA 118 (434)
T ss_dssp TT--------TCCCCSSSHHHHHHHHHHCCSS------S-----SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHH
T ss_pred CC--------CCCCCCCCcHHHHHHHHHcCCC------C-----ceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHH
Confidence 32 2567889999999999998642 1 279999999999999987663 456899999999
Q ss_pred HhCCCcEEEeccCCCCCCCccchHHHHHHHh-hhcCceEEEecCCCCCCC--CccccCCCceEEEceeccCceeEEEEEe
Q 045363 231 IGDGVDLISISIGGPSRSYFDDSISIGSFHA-MKKGILTACSAGNDGPYQ--GTVENVAPWIMTVAASSIDRKFVTAVKL 307 (712)
Q Consensus 231 ~~~g~dVIN~S~G~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~--~~~~~~~p~vitVga~~~~~~~~~~~~~ 307 (712)
+++|++|||||||......+ +....++.++ .++|++||+||||+|... ...+..++++|+|||++..+...
T Consensus 119 ~~~g~~Vin~S~G~~~~~~~-~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~----- 192 (434)
T 1wmd_A 119 YSAGARIHTNSWGAAVNGAY-TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF----- 192 (434)
T ss_dssp HHTTCSEEEECCCBCCTTCC-CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-----
T ss_pred HhcCCeEEEecCCCCcCCcC-CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc-----
Confidence 99999999999998742212 2333344444 588999999999999764 34567789999999986432000
Q ss_pred CCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEE
Q 045363 308 GNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIV 387 (712)
Q Consensus 308 ~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~ 387 (712)
. ..
T Consensus 193 -------------------------~------------------------------------------~~---------- 195 (434)
T 1wmd_A 193 -------------------------G------------------------------------------SY---------- 195 (434)
T ss_dssp -------------------------C------------------------------------------GG----------
T ss_pred -------------------------C------------------------------------------cc----------
Confidence 0 00
Q ss_pred EecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCC
Q 045363 388 AVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGL 467 (712)
Q Consensus 388 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 467 (712)
....+.++.||++||+. ++++||||+|||+
T Consensus 196 ------------------------------------------------~~~~~~~a~fS~~G~~~--~g~~kpdi~ApG~ 225 (434)
T 1wmd_A 196 ------------------------------------------------ADNINHVAQFSSRGPTK--DGRIKPDVMAPGT 225 (434)
T ss_dssp ------------------------------------------------GSCTTSBCTTSCCCCCT--TSCCCCCEEEECS
T ss_pred ------------------------------------------------cCCCCccccccCCCCCC--CCCCCceEEcCCC
Confidence 01234789999999998 9999999999999
Q ss_pred cEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCC-----CHHHHHHHHHccccCCCCCCCCCC
Q 045363 468 DILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDW-----SPAAIKSALMTTATPMKTKSDDAE 542 (712)
Q Consensus 468 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~l-----sp~~ik~~L~~TA~~~~~~~~~~~ 542 (712)
+|+++.+......... ......|..++|||||||||||++|||+|++|++ ++++||++|++||+++.. ...+
T Consensus 226 ~i~s~~~~~~~~~~~~-~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~--~~~~ 302 (434)
T 1wmd_A 226 FILSARSSLAPDSSFW-ANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL--GYPN 302 (434)
T ss_dssp SEEEECCTTCCGGGSS-EEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS--CSSC
T ss_pred CeEecCCCCCCCcccc-cCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCC--CCCC
Confidence 9999986421100000 0013469999999999999999999999998875 899999999999998643 2367
Q ss_pred CCCCCCCcCccccCCCC
Q 045363 543 LASGSGQINPTKAVHPG 559 (712)
Q Consensus 543 ~~~G~G~in~~~A~~~~ 559 (712)
..||||++|+.+|++..
T Consensus 303 ~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 303 GNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp TTTTTCBCCHHHHHTCE
T ss_pred ccCCcCeEeHHHhcccc
Confidence 88999999999999754
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-48 Score=462.80 Aligned_cols=357 Identities=24% Similarity=0.232 Sum_probs=249.7
Q ss_pred CCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC---CChHHHHHHHHHHHh-----CCCcEE
Q 045363 167 VDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG---CADMDILAAFDDAIG-----DGVDLI 238 (712)
Q Consensus 167 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~-----~g~dVI 238 (712)
.|.+||||||||||||.. ++.+ +.||||+|+|+.+|+++..+ .+..+++++|.+|++ .|++||
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~~g--------~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVI 337 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SSRD--------VDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVI 337 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SSSS--------SCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCCCcHHHHHHHHhcCC-CCCC--------ceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEE
Confidence 478899999999999986 3322 28999999999999997643 255678888888887 799999
Q ss_pred EeccCCCCCCCccchHHHHHHHhh-hcCceEEEecCCCCCCCCc--ccc--CCCceEEEceeccCceeEEEEEeCCCceE
Q 045363 239 SISIGGPSRSYFDDSISIGSFHAM-KKGILTACSAGNDGPYQGT--VEN--VAPWIMTVAASSIDRKFVTAVKLGNGMRT 313 (712)
Q Consensus 239 N~S~G~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~g~~~~~--~~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~ 313 (712)
|||||........+.+..++.++. ++|++||+||||+|+...+ .++ ..+++|+|||++...........
T Consensus 338 NmS~G~~~~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~------ 411 (1354)
T 3lxu_X 338 NMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM------ 411 (1354)
T ss_dssp EECCCCCCSCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC----------
T ss_pred EcCCccCCCCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc------
Confidence 999999753334556666777775 8999999999999976443 445 37999999998644211000000
Q ss_pred eeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCC
Q 045363 314 SGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPT 393 (712)
Q Consensus 314 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 393 (712)
..
T Consensus 412 --------------------------------------------------------------~~---------------- 413 (1354)
T 3lxu_X 412 --------------------------------------------------------------RE---------------- 413 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------cc----------------
Confidence 00
Q ss_pred CcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeee
Q 045363 394 DIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAY 473 (712)
Q Consensus 394 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 473 (712)
...+.++.|||+||+. ++++||||+|||++|+++.
T Consensus 414 -------------------------------------------~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~ 448 (1354)
T 3lxu_X 414 -------------------------------------------KLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVP 448 (1354)
T ss_dssp -----------------------------------------------CCCCCCCCSCCS--SSSCCEEEEEEC-------
T ss_pred -------------------------------------------CCCCccccccCCCCCc--cCCCcceEEecCceEEEee
Confidence 1124789999999998 9999999999999999875
Q ss_pred cCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCC
Q 045363 474 SELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKS----FHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQ 549 (712)
Q Consensus 474 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~ 549 (712)
.. ..+.|..++|||||||||||++|||++ .+|+|++.+||++|++||+++... .++.||||+
T Consensus 449 ~~-----------~~~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~~---~~~~~G~Gl 514 (1354)
T 3lxu_X 449 QF-----------TMSKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYV---DPFAQGHGL 514 (1354)
T ss_dssp -------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTTS---CTTTSSSSB
T ss_pred cC-----------CCCceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCCC---CcccccCCE
Confidence 42 124589999999999999999999986 799999999999999999998764 567899999
Q ss_pred cCccccCCCCeeeecCcchhhhhhccCCCC-ccceeeecccccccccCCCCCCCCCCCCCCCceeeeecCCCceeEEEEE
Q 045363 550 INPTKAVHPGLIYDLNLSSYTRFLCKEGYN-STAIGRLIGRKKKLNCSTIRPAQGLDGLNYPSMHFHFTNESSISAIFRR 628 (712)
Q Consensus 550 in~~~A~~~~lv~~~~~~dy~~~lc~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~~r 628 (712)
||+.+|++..+.++..+.+|+.|+|..+.. ...|.+-.. .+ . +....++++
T Consensus 515 LDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIylR~~-----~~----------------------~-~~~~~tv~V 566 (1354)
T 3lxu_X 515 LNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLRQG-----VQ----------------------R-NSIDYNVYI 566 (1354)
T ss_dssp CCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEEECSS-----CC----------------------C-SCEEEEEEE
T ss_pred eCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceEEecc-----cc----------------------C-CceEEEEEE
Confidence 999999999999999999999999998763 322221110 00 0 111222222
Q ss_pred --EEEEcC---CC-CeeE--EEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEecccCCCCeEEEEEEEEc-----CC
Q 045363 629 --TVTNVG---FA-KSLY--KATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSD-----TK 695 (712)
Q Consensus 629 --tv~n~~---~~-~~ty--~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~~-----~~ 695 (712)
++.|.. .. ...| ++.+.... --|++ |..|.+ .++.++|.|.|+.+... .+.+++.|..-| ..
T Consensus 567 ~p~f~~~~~~~~~~~i~f~~~l~L~~t~-~wv~~-p~~l~l--~~~~r~~~v~vDp~~L~-~G~h~~~v~~~D~~~~~~g 641 (1354)
T 3lxu_X 567 EPIFYNDKEADPKDKFNFNVRLNLIASQ-PWVQC-GAFLDL--SYGTRSIAVRVDPTGLQ-PGVHSAVIRAYDTDCVQKG 641 (1354)
T ss_dssp EEEESSCSCSSSTTCSCCCCEEEEEESS-TTEEE-CSCEEC--TTSCEEEEEEECGGGCC-SEEEEEEEEEEESSCTTSC
T ss_pred eeeecCcccCChhhccceEEEEEEecCC-Cceec-ccceee--cCCCceEEEEECCCCCC-CcceeEEEEEEEcCCcccC
Confidence 332211 11 1112 22222211 12333 777777 57889999999999865 678999998765 34
Q ss_pred cEEEeeEEEEecC
Q 045363 696 HSVKSPILVYKQF 708 (712)
Q Consensus 696 ~~v~~P~~~~~~~ 708 (712)
...|+|+.|....
T Consensus 642 p~f~ipvTv~~P~ 654 (1354)
T 3lxu_X 642 SLFEIPVTVVQPH 654 (1354)
T ss_dssp CSEEEEEEEEECB
T ss_pred ceEEeeEEEEeee
Confidence 7899999987654
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=400.34 Aligned_cols=236 Identities=24% Similarity=0.341 Sum_probs=202.0
Q ss_pred hhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCC
Q 045363 88 KLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPV 167 (712)
Q Consensus 88 ~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 167 (712)
..+|..+++|+||+|+|||||||++||+|.+ ++...++| .++. ..+.
T Consensus 19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~-------------------------~~~~~~~~-~~~~-------~~~~ 65 (284)
T 1sh7_A 19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGG-------------------------RSVSGYDF-VDND-------ADSS 65 (284)
T ss_dssp CSBCCCSCCCTTCEEEEEESCCCTTCTTTTT-------------------------CEEEEEET-TTTB-------SCCC
T ss_pred hhhhhcCCCCCCCEEEEEcCCCCCCChhHcC-------------------------Cccccccc-cCCC-------CCCC
Confidence 3689999999999999999999999999964 24455666 3321 2466
Q ss_pred CCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhC--CCcEEEeccCC
Q 045363 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGD--GVDLISISIGG 244 (712)
Q Consensus 168 d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~--g~dVIN~S~G~ 244 (712)
|..+|||||||||+|+. .||||+|+|+.+|+++..+ ++.+++++||+|++++ +++|||||||.
T Consensus 66 d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~ 131 (284)
T 1sh7_A 66 DCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGG 131 (284)
T ss_dssp CSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEEEEECCCB
T ss_pred CCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCC
Confidence 88999999999999873 6999999999999998766 6788999999999984 79999999998
Q ss_pred CCCCCccchHHHHHHHhhhcCceEEEecCCCCCCC-CccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCC
Q 045363 245 PSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ-GTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSP 323 (712)
Q Consensus 245 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 323 (712)
.. ...+..++.++.++|++||+||||+|... ...+...|++|+|||++.+
T Consensus 132 ~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------------------- 182 (284)
T 1sh7_A 132 GQ----STALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTSS------------------------- 182 (284)
T ss_dssp SC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECTT-------------------------
T ss_pred CC----CHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecCC-------------------------
Confidence 63 45677777788999999999999998754 3456778999999986532
Q ss_pred CCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeE
Q 045363 324 RKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAG 403 (712)
Q Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~ 403 (712)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCC
Q 045363 404 TFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLP 483 (712)
Q Consensus 404 ~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 483 (712)
+.++.||++||.. ||+|||.+|+++++.
T Consensus 183 ------------------------------------~~~~~~S~~G~~~--------di~ApG~~i~s~~~~-------- 210 (284)
T 1sh7_A 183 ------------------------------------DSRSSFSNWGSCV--------DLFAPGSQIKSAWYD-------- 210 (284)
T ss_dssp ------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTT--------
T ss_pred ------------------------------------CCcCcccCCCCcc--------EEEeccCCeEEecCC--------
Confidence 3678999999976 999999999998764
Q ss_pred CCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCC
Q 045363 484 GDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKT 536 (712)
Q Consensus 484 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~ 536 (712)
+.|..++|||||||||||++|||+|++|+|++++||++|++||++...
T Consensus 211 -----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 258 (284)
T 1sh7_A 211 -----GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENKV 258 (284)
T ss_dssp -----SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred -----CCEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCc
Confidence 358999999999999999999999999999999999999999998765
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-47 Score=393.51 Aligned_cols=238 Identities=27% Similarity=0.353 Sum_probs=201.1
Q ss_pred hhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCC
Q 045363 88 KLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPV 167 (712)
Q Consensus 88 ~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 167 (712)
..+|..+++|+||+|+|||||||++||+|.+. +...++| .++. ..+.
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~-------------------------~~~~~d~-~~~~-------~~~~ 67 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR-------------------------ASSGYDF-IDND-------YDAT 67 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTC-------------------------EEEEEET-TTTB-------SCCC
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcc-------------------------cccCeec-CCCC-------CCCC
Confidence 36799999999999999999999999999642 3445566 3321 3457
Q ss_pred CCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHh--CCCcEEEeccCC
Q 045363 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIG--DGVDLISISIGG 244 (712)
Q Consensus 168 d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~--~g~dVIN~S~G~ 244 (712)
|..+|||||||||+|+. .||||+|+|+.+|++++.+ ++.++++++|+|+++ .+++|||||||.
T Consensus 68 d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~ 133 (278)
T 2b6n_A 68 DCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGG 133 (278)
T ss_dssp CSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCE
T ss_pred CCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeEEEECCCC
Confidence 88999999999999873 6999999999999998766 778899999999997 599999999998
Q ss_pred CCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCC-ccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCC
Q 045363 245 PSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQG-TVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSP 323 (712)
Q Consensus 245 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 323 (712)
.. ...+..++.++.++|++||+||||+|.... ..+...+++|+|||++.+
T Consensus 134 ~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------------------- 184 (278)
T 2b6n_A 134 GA----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN------------------------- 184 (278)
T ss_dssp EC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-------------------------
T ss_pred Cc----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC-------------------------
Confidence 64 356677777889999999999999997643 346778999999986532
Q ss_pred CCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeE
Q 045363 324 RKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAG 403 (712)
Q Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~ 403 (712)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCC
Q 045363 404 TFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLP 483 (712)
Q Consensus 404 ~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 483 (712)
+.++.||++||.. ||+|||.+|++++...
T Consensus 185 ------------------------------------~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~------- 213 (278)
T 2b6n_A 185 ------------------------------------DSRSSFSNYGTCL--------DIYAPGSSITSSWYTS------- 213 (278)
T ss_dssp ------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTTS-------
T ss_pred ------------------------------------CCcCCcCCCCCCC--------eEEeCCCCeECcccCC-------
Confidence 3678899999865 9999999999987641
Q ss_pred CCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCC
Q 045363 484 GDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKT 536 (712)
Q Consensus 484 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~ 536 (712)
...|..++|||||||||||++|||+|++|+|++++||++|++||++...
T Consensus 214 ----~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 262 (278)
T 2b6n_A 214 ----NSATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADKV 262 (278)
T ss_dssp ----TTCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred ----CCCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCc
Confidence 1458999999999999999999999999999999999999999987543
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-47 Score=395.62 Aligned_cols=253 Identities=28% Similarity=0.341 Sum_probs=210.1
Q ss_pred CCCccccccchhh------hccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEe
Q 045363 77 TRTWDFLGMSEKL------QKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARY 150 (712)
Q Consensus 77 ~~s~~~~~~~~~~------~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~ 150 (712)
..+|.+..+.+.. .|+ ..+|+||+|+|||||||++||+|.+. +...++
T Consensus 5 ~~~W~l~~i~~~~~~~~~~~~~-~~~G~gv~VaViDsGvd~~H~~l~~~-------------------------~~~~~~ 58 (279)
T 2pwa_A 5 NAPWGLARISSTSPGTSTYYYD-ESAGQGSCVYVIDTGIEASHPEFEGR-------------------------AQMVKT 58 (279)
T ss_dssp TCCHHHHHHTCSSTTCCCEECC-TTTTTTEEEEEEESCCCTTCGGGTTC-------------------------EEEEEE
T ss_pred CCCcChhhcCCCCccccccccc-CCCCCCCEEEEEeCCCCCCChhHhCc-------------------------cccccC
Confidence 4456655554333 454 37899999999999999999999642 445566
Q ss_pred ccCCCCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHH
Q 045363 151 YNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDD 229 (712)
Q Consensus 151 ~~~~~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ 229 (712)
| .. .+.|..+|||||||||+|+. .||||+|+|+.+|+++..+ ++.+++++||+|
T Consensus 59 ~-~~----------~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~ 113 (279)
T 2pwa_A 59 Y-YY----------SSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDF 113 (279)
T ss_dssp S-SS----------CSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHH
T ss_pred C-CC----------CCCCCCCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHH
Confidence 6 31 35678999999999999873 7999999999999998876 788999999999
Q ss_pred HHhCCC-------cEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCC-ccccCCCceEEEceeccCcee
Q 045363 230 AIGDGV-------DLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQG-TVENVAPWIMTVAASSIDRKF 301 (712)
Q Consensus 230 a~~~g~-------dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~ 301 (712)
++++++ +|||||||.. ....+..++.++.++|++||+||||+|.... ..+...|++|+|||++.+
T Consensus 114 a~~~~~~~~~~~~~Vin~S~G~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--- 186 (279)
T 2pwa_A 114 VASDKNNRNCPKGVVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY--- 186 (279)
T ss_dssp HHHHGGGSCCTTEEEEEECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT---
T ss_pred HHhcCccccCCCccEEEecCCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC---
Confidence 999887 9999999975 3466777778889999999999999997642 356778999999986532
Q ss_pred EEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccC
Q 045363 302 VTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQ 381 (712)
Q Consensus 302 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~G 381 (712)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCc
Q 045363 382 GAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPD 461 (712)
Q Consensus 382 a~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPD 461 (712)
+.++.||++||.. |
T Consensus 187 ----------------------------------------------------------~~~~~~S~~G~~~--------d 200 (279)
T 2pwa_A 187 ----------------------------------------------------------DRRSSFSNYGSVL--------D 200 (279)
T ss_dssp ----------------------------------------------------------SBBCTTCCBSTTC--------C
T ss_pred ----------------------------------------------------------CCcCCcCCCCCcc--------e
Confidence 3678999999965 9
Q ss_pred EEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCC
Q 045363 462 IAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDA 541 (712)
Q Consensus 462 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~ 541 (712)
|+|||.+|+++++. +.|..++|||||||||||++|||+|+ |++++.+||++|++||++...
T Consensus 201 i~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~----- 261 (279)
T 2pwa_A 201 IFGPGTDILSTWIG-------------GSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL----- 261 (279)
T ss_dssp EEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC-----
T ss_pred EEEecCCeEEeecC-------------CCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc-----
Confidence 99999999999875 35899999999999999999999999 999999999999999998653
Q ss_pred CCCCCCCCcCcc
Q 045363 542 ELASGSGQINPT 553 (712)
Q Consensus 542 ~~~~G~G~in~~ 553 (712)
..+|+|.+|+.
T Consensus 262 -~~~~~g~~n~l 272 (279)
T 2pwa_A 262 -SNIPFGTVNLL 272 (279)
T ss_dssp -BSCCTTSCCEE
T ss_pred -CCCCCCCccEe
Confidence 23688888873
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=392.51 Aligned_cols=236 Identities=26% Similarity=0.323 Sum_probs=202.5
Q ss_pred hhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCC
Q 045363 88 KLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPV 167 (712)
Q Consensus 88 ~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 167 (712)
..+|..+.+|+||+|+|||||||++||+|.+. +...++| .. ....
T Consensus 21 ~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~-------------------------~~~~~~~-~~---------~~~~ 65 (276)
T 4dzt_A 21 SNSYTYTATGRGVNVYVIDTGIRTTHREFGGR-------------------------ARVGYDA-LG---------GNGQ 65 (276)
T ss_dssp CSCEECSCCCTTCEEEEEESCCCTTCGGGTTC-------------------------EEEEEET-TS---------SCSC
T ss_pred ccceecCCCCCCcEEEEEccCCCCCChhHccC-------------------------eeccccC-CC---------CCCC
Confidence 47899999999999999999999999999642 3445555 33 2456
Q ss_pred CCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhC--CCcEEEeccCC
Q 045363 168 DTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGD--GVDLISISIGG 244 (712)
Q Consensus 168 d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~--g~dVIN~S~G~ 244 (712)
|..||||||||||+|.. .||||+|+|+.+|+++..+ ....+++++++|+++. +++|||||||.
T Consensus 66 d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~ 131 (276)
T 4dzt_A 66 DCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGG 131 (276)
T ss_dssp CSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCE
T ss_pred CCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEEECCCC
Confidence 78999999999999873 6999999999999998766 7888999999999987 89999999997
Q ss_pred CCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCc-cccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecCCC
Q 045363 245 PSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGT-VENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSP 323 (712)
Q Consensus 245 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 323 (712)
.. ...+..++.++.++|+++|+||||+|..... .+...+++|+|||++.+
T Consensus 132 ~~----~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------------------- 182 (276)
T 4dzt_A 132 GV----STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTSS------------------------- 182 (276)
T ss_dssp EC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-------------------------
T ss_pred CC----CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECCC-------------------------
Confidence 53 4667777788999999999999999976543 36778999999986432
Q ss_pred CCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceeeeE
Q 045363 324 RKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLIAG 403 (712)
Q Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~ 403 (712)
T Consensus 183 -------------------------------------------------------------------------------- 182 (276)
T 4dzt_A 183 -------------------------------------------------------------------------------- 182 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCCCC
Q 045363 404 TFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLP 483 (712)
Q Consensus 404 ~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 483 (712)
+.++.||++||.. ||+|||.+|++++...
T Consensus 183 ------------------------------------~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~------- 211 (276)
T 4dzt_A 183 ------------------------------------DARASFSNYGSCV--------DLFAPGASIPSAWYTS------- 211 (276)
T ss_dssp ------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTTS-------
T ss_pred ------------------------------------CCcCCcCCCCCCc--------eEEeCCCCeEccccCC-------
Confidence 3678999999977 9999999999998641
Q ss_pred CCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCC
Q 045363 484 GDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKT 536 (712)
Q Consensus 484 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~ 536 (712)
...|..++|||||||+|||++|||+|++|+|++++||++|++||++...
T Consensus 212 ----~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 260 (276)
T 4dzt_A 212 ----DTATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRL 260 (276)
T ss_dssp ----SSCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred ----CCceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCcc
Confidence 1358999999999999999999999999999999999999999999764
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-46 Score=419.55 Aligned_cols=292 Identities=15% Similarity=0.137 Sum_probs=220.2
Q ss_pred CCccccc-----cchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEecc
Q 045363 78 RTWDFLG-----MSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYN 152 (712)
Q Consensus 78 ~s~~~~~-----~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~ 152 (712)
.+|.+.. ++...+|+.+++|+||+|||||||||++||+|.+.-. ....++|
T Consensus 13 ~qW~l~~~~~~~i~~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~-----------------------~~~~~d~- 68 (471)
T 1p8j_A 13 QQWYLSGVTQRDLNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD-----------------------PGASFDV- 68 (471)
T ss_dssp GCTTTSCTTSCSCCCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC-----------------------GGGCEET-
T ss_pred hCcCCCCCCccCCChHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC-----------------------ccCcccc-
Confidence 4565543 5566999999999999999999999999999975310 0012334
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHh
Q 045363 153 LDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIG 232 (712)
Q Consensus 153 ~~~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~ 232 (712)
.++. ..+.+...+.|..+|||||||||+|...++.+. .||||+|+|+.+|+++ +...++++|++++++
T Consensus 69 ~~~~-~~p~~~~~~~d~~gHGT~vAGiiaa~~~n~~g~--------~GvAp~a~i~~~rv~~---g~~~~~~~ai~~a~~ 136 (471)
T 1p8j_A 69 NDQD-PDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCG--------VGVAYNARIGGVRMLD---GEVTDAVEARSLGLN 136 (471)
T ss_dssp TTTB-SCCCCCCCTTCTTCHHHHHHHHHHCCSSSSSSC--------CCTTTTSEEEEEECSS---SCCCHHHHHHHHTSC
T ss_pred cCCC-CCCCCccCCCCCCCcHHHHHHHHHeeccCCCCC--------EEECCCCeEEEEEccC---CchhHHHHHHHhhhc
Confidence 2221 111111245678999999999999986554332 8999999999999986 346789999999999
Q ss_pred -CCCcEEEeccCCCCCC----CccchHHHHHHHhh-----hcCceEEEecCCCCCCCCc----cccCCCceEEEceeccC
Q 045363 233 -DGVDLISISIGGPSRS----YFDDSISIGSFHAM-----KKGILTACSAGNDGPYQGT----VENVAPWIMTVAASSID 298 (712)
Q Consensus 233 -~g~dVIN~S~G~~~~~----~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVga~~~~ 298 (712)
++++|||||||..... .....+..++.++. .+|++||+||||+|..... ....++++|+|||++.+
T Consensus 137 ~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~~ 216 (471)
T 1p8j_A 137 PNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF 216 (471)
T ss_dssp TTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT
T ss_pred cCCCeEEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccCC
Confidence 8999999999986321 11223344444444 3699999999999975322 12345889999986532
Q ss_pred ceeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhh
Q 045363 299 RKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTID 378 (712)
Q Consensus 299 ~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~ 378 (712)
T Consensus 217 -------------------------------------------------------------------------------- 216 (471)
T 1p8j_A 217 -------------------------------------------------------------------------------- 216 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcc
Q 045363 379 RLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNIL 458 (712)
Q Consensus 379 ~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~l 458 (712)
+.++.||++||.. ....
T Consensus 217 -------------------------------------------------------------g~~a~~S~~g~~~--~~~~ 233 (471)
T 1p8j_A 217 -------------------------------------------------------------GNVPWYSEACSST--LATT 233 (471)
T ss_dssp -------------------------------------------------------------SCCCTTCCBCTTC--CEEE
T ss_pred -------------------------------------------------------------CCcccccCCCCcc--eEEe
Confidence 3678899999987 5555
Q ss_pred cCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCC
Q 045363 459 KPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKS 538 (712)
Q Consensus 459 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~ 538 (712)
+|...+||.+|+++... ...|..++|||||||||||++|||+|++|+|++++||++|++||++.....
T Consensus 234 ~~~~~~~g~~i~st~~~------------~~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~ 301 (471)
T 1p8j_A 234 YSSGNQNEKQIVTTDLR------------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNA 301 (471)
T ss_dssp ECCCSTTSCCEEEEETT------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCC
T ss_pred CCCCCCCCCCEEEeeCC------------CCccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCC
Confidence 66666677899998753 135899999999999999999999999999999999999999999986531
Q ss_pred ---------CCCCCCCCCCCcCccccCCCCe
Q 045363 539 ---------DDAELASGSGQINPTKAVHPGL 560 (712)
Q Consensus 539 ---------~~~~~~~G~G~in~~~A~~~~l 560 (712)
...+..||||+||+.+|++...
T Consensus 302 ~~~~~n~~g~~~~~~~G~G~vda~~Av~~a~ 332 (471)
T 1p8j_A 302 DDWATNGVGRKVSHSYGYGLLDAGAMVALAQ 332 (471)
T ss_dssp SCCEECTTSCEEBTTTBTCBCCHHHHHHHHH
T ss_pred CCceecCCCcccCCCCCCEEEcHhHHHHHhh
Confidence 1135789999999999998543
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=415.05 Aligned_cols=278 Identities=17% Similarity=0.155 Sum_probs=215.3
Q ss_pred ccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCC
Q 045363 84 GMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQ 163 (712)
Q Consensus 84 ~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~ 163 (712)
.++...+|+.+++|+||+|||||||||++||+|.+... ..+.++| .++. .++
T Consensus 40 ~i~~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~~-----------------------~~~~~d~-~~~~----~~~ 91 (503)
T 2id4_A 40 DINVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC-----------------------AEGSWDF-NDNT----NLP 91 (503)
T ss_dssp SCCCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC-----------------------GGGCEET-TTTB----SCC
T ss_pred ccChHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhccc-----------------------ccCcccC-CCCC----CCC
Confidence 34556999999999999999999999999999976411 0112344 3221 111
Q ss_pred CCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhCCCcEEEeccC
Q 045363 164 KSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIG 243 (712)
Q Consensus 164 ~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S~G 243 (712)
....|..+|||||||||+|...++.+. .||||+|+|+.+|+++.. .+..++++||+|+++++ +|||||||
T Consensus 92 ~p~~d~~gHGT~vAGiiaa~~~n~~~~--------~GvAp~a~i~~~rv~~~~-~~~~~~~~ai~~a~~~~-~Iin~S~G 161 (503)
T 2id4_A 92 KPRLSDDYHGTRCAGEIAAKKGNNFCG--------VGVGYNAKISGIRILSGD-ITTEDEAASLIYGLDVN-DIYSCSWG 161 (503)
T ss_dssp CCCSTTTTHHHHHHHHHHCCSSSSSSC--------CCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTTTC-SEEEECEE
T ss_pred CCCCCCCChHHHHHHHHHhccCCCCCc--------EEECCCCEEEEEEeeCCC-CChHHHHHHHHhHhhcC-CEEEeCCC
Confidence 223578899999999999987554332 799999999999999743 67888999999999988 99999999
Q ss_pred CCCCC----CccchHHHHHHHhh-----hcCceEEEecCCCCCCCCc--cc--cCCCceEEEceeccCceeEEEEEeCCC
Q 045363 244 GPSRS----YFDDSISIGSFHAM-----KKGILTACSAGNDGPYQGT--VE--NVAPWIMTVAASSIDRKFVTAVKLGNG 310 (712)
Q Consensus 244 ~~~~~----~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~~--~~--~~~p~vitVga~~~~~~~~~~~~~~~g 310 (712)
..... .....+..++.++. .+|++||+||||+|..... .+ ..++++|+|||++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~------------ 229 (503)
T 2id4_A 162 PADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK------------ 229 (503)
T ss_dssp SCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT------------
T ss_pred cCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCC------------
Confidence 86321 12234555555555 4799999999999965422 22 245789999986532
Q ss_pred ceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEec
Q 045363 311 MRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVD 390 (712)
Q Consensus 311 ~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~ 390 (712)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEe----CC
Q 045363 391 APTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAA----PG 466 (712)
Q Consensus 391 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~A----PG 466 (712)
+.++.||++||.. |++| ||
T Consensus 230 -------------------------------------------------~~~a~~S~~g~~~--------~~~a~~~gpG 252 (503)
T 2id4_A 230 -------------------------------------------------DLHPPYSEGCSAV--------MAVTYSSGSG 252 (503)
T ss_dssp -------------------------------------------------SCCCTTCCCCTTE--------EEEEECSBTT
T ss_pred -------------------------------------------------CCcCCcCCCCCcc--------eEeecCCCCC
Confidence 3678999999988 8887 89
Q ss_pred CcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCC-C-------
Q 045363 467 LDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTK-S------- 538 (712)
Q Consensus 467 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~-~------- 538 (712)
..|+++..+ ...|..++|||||||||||++|||+|++|+|++++||++|++||+++... .
T Consensus 253 ~~I~st~~~------------~~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~~ 320 (503)
T 2id4_A 253 EYIHSSDIN------------GRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSA 320 (503)
T ss_dssp BCEEEECST------------TCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECS
T ss_pred CceEeecCC------------CCceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceecC
Confidence 999998542 14699999999999999999999999999999999999999999987653 1
Q ss_pred --CCCCCCCCCCCcCccccCCCCe
Q 045363 539 --DDAELASGSGQINPTKAVHPGL 560 (712)
Q Consensus 539 --~~~~~~~G~G~in~~~A~~~~l 560 (712)
...+..||||+||+.+|++...
T Consensus 321 ~g~~~~~~~G~G~vda~~Av~~a~ 344 (503)
T 2id4_A 321 MGKKYSHRYGFGKIDAHKLIEMSK 344 (503)
T ss_dssp SSSEEBTTTBTCBCCHHHHHHHHT
T ss_pred CCCccCcccCCcEecHHHHHHHHh
Confidence 1135689999999999998543
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=386.10 Aligned_cols=242 Identities=29% Similarity=0.383 Sum_probs=201.9
Q ss_pred CCCccccccchh------hhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEe
Q 045363 77 TRTWDFLGMSEK------LQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARY 150 (712)
Q Consensus 77 ~~s~~~~~~~~~------~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~ 150 (712)
..+|.+..+... .+|+.. +|+||+|+|||||||++||+|.+ ++....+
T Consensus 6 ~~~W~l~~i~~~~~~~~~~~~~~~-~G~gv~VaViDtGvd~~h~~l~~-------------------------~~~~~~~ 59 (279)
T 3f7m_A 6 GATWGLTRISHRARGSTAYAYDTS-AGAGACVYVIDTGVEDTHPDFEG-------------------------RAKQIKS 59 (279)
T ss_dssp TCCHHHHHHTCSSSCCCSEEECTT-TTTTEEEEEEESCCCTTCGGGTT-------------------------CEEEEEE
T ss_pred CCCCCHhhcCCCCCCCcceeecCC-CCCCCEEEEEcCCCCCCChhhcc-------------------------ccccccC
Confidence 345655555433 456655 99999999999999999999964 2445555
Q ss_pred ccCCCCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHH
Q 045363 151 YNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDD 229 (712)
Q Consensus 151 ~~~~~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ 229 (712)
| ..+ ..|..||||||||||+|+. .||||+|+|+.+|+++..+ ++..+++++|+|
T Consensus 60 ~-~~~----------~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~ 114 (279)
T 3f7m_A 60 Y-AST----------ARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDF 114 (279)
T ss_dssp C-SSS----------SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHH
T ss_pred C-CCC----------CCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHH
Confidence 6 332 2378999999999999873 6999999999999998766 788899999999
Q ss_pred HHhCC-------CcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCc-cccCCCceEEEceeccCcee
Q 045363 230 AIGDG-------VDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGT-VENVAPWIMTVAASSIDRKF 301 (712)
Q Consensus 230 a~~~g-------~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVga~~~~~~~ 301 (712)
+++++ ++|||||||.. ....+..++.++.++|++||+||||+|..... .+...+++|+|||++.+
T Consensus 115 ~~~~~~~~~~~~~~Vin~S~g~~----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--- 187 (279)
T 3f7m_A 115 VASDRQSRNCPRRTVASMSLGGG----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSN--- 187 (279)
T ss_dssp HHHHGGGSCCTTEEEEEECCCEE----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT---
T ss_pred HHhccccccCCCCeEEEeCCCcC----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCCC---
Confidence 99876 89999999975 45667777888999999999999999976543 36778999999986432
Q ss_pred EEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccC
Q 045363 302 VTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQ 381 (712)
Q Consensus 302 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~G 381 (712)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 3f7m_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCc
Q 045363 382 GAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPD 461 (712)
Q Consensus 382 a~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPD 461 (712)
+.++.||++||.. |
T Consensus 188 ----------------------------------------------------------~~~~~~S~~g~~~--------d 201 (279)
T 3f7m_A 188 ----------------------------------------------------------DVRSTFSNYGRVV--------D 201 (279)
T ss_dssp ----------------------------------------------------------SBBCTTCCBSTTC--------C
T ss_pred ----------------------------------------------------------CCCCCCCCCCCCC--------e
Confidence 3678999999966 9
Q ss_pred EEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCC
Q 045363 462 IAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKT 536 (712)
Q Consensus 462 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~ 536 (712)
|+|||.+|+++++. ..|..++|||||||+|||++|||+|++|+ ++++||++|++||++...
T Consensus 202 i~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~~ 262 (279)
T 3f7m_A 202 IFAPGTSITSTWIG-------------GRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNVL 262 (279)
T ss_dssp EEEECSSEEEECGG-------------GCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESCC
T ss_pred EEECCCCeEeecCC-------------CCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhcccccc
Confidence 99999999999874 35899999999999999999999999999 999999999999988654
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-45 Score=404.62 Aligned_cols=246 Identities=21% Similarity=0.231 Sum_probs=188.4
Q ss_pred hccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCC
Q 045363 90 QKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDT 169 (712)
Q Consensus 90 ~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~ 169 (712)
.|..+++|+||+|+|||||||++||+|.+.. ....+.+..+.. . ........|.
T Consensus 18 aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~------------------------~~~~~~~v~~~d-g-~~f~~~~~D~ 71 (546)
T 2qtw_B 18 EYQPPDGGSLVEVYLLDTSIQSDHREIEGRV------------------------MVTDFENVPEED-G-TRFHRQASKC 71 (546)
T ss_dssp ------CCTTSEEEEEESCCCTTSTTTTTTE------------------------EEEEEECCCCCC---------CTTT
T ss_pred hcccCCCCCCcEEEEECCCCCCCChHHcccc------------------------cccCcccccCCC-C-ccccCCCCCC
Confidence 7888999999999999999999999997531 111111101110 0 0001245678
Q ss_pred CCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhC------CCcEEEecc
Q 045363 170 DGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGD------GVDLISISI 242 (712)
Q Consensus 170 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~------g~dVIN~S~ 242 (712)
.||||||||||+|+. .||||+|+|+.+|+++..+ ++.+++++||+|+++. +++||||||
T Consensus 72 ~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~VINmSl 137 (546)
T 2qtw_B 72 DSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPL 137 (546)
T ss_dssp THHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEEEEECE
T ss_pred CChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeEEEecC
Confidence 999999999999874 6999999999999998876 6788999999999984 899999999
Q ss_pred CCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCC-CccccCCCceEEEceeccCceeEEEEEeCCCceEeeeeeecC
Q 045363 243 GGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ-GTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTF 321 (712)
Q Consensus 243 G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 321 (712)
|+. ....+..++.++.++|++||+||||+|... ...+...|++|+|||++.+...
T Consensus 138 Gg~----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~-------------------- 193 (546)
T 2qtw_B 138 AGG----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP-------------------- 193 (546)
T ss_dssp EEE----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB--------------------
T ss_pred CCC----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc--------------------
Confidence 975 345677778889999999999999999754 3346778999999997643100
Q ss_pred CCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcccceee
Q 045363 322 SPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAIATLI 401 (712)
Q Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 401 (712)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCCccCCC
Q 045363 402 AGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTG 481 (712)
Q Consensus 402 p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 481 (712)
...-..||++|+. |||+|||.+|+++++..
T Consensus 194 -------------------------------------a~~s~~fSn~G~~--------vDI~APG~~I~St~~~~----- 223 (546)
T 2qtw_B 194 -------------------------------------VTLGTLGTNFGRC--------VDLFAPGEDIIGASSDC----- 223 (546)
T ss_dssp -------------------------------------CEETTEECCBSTT--------CCEEEECSSEEEECTTS-----
T ss_pred -------------------------------------ccccCCcCCCCCc--------ceEEecCccEEeeccCC-----
Confidence 0001128999974 49999999999998641
Q ss_pred CCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCC
Q 045363 482 LPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMK 535 (712)
Q Consensus 482 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~ 535 (712)
...|..++|||||||||||++|||+|++|+|+++|||++|++||.+..
T Consensus 224 ------~~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~ 271 (546)
T 2qtw_B 224 ------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDV 271 (546)
T ss_dssp ------TTCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESC
T ss_pred ------CCcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccc
Confidence 135899999999999999999999999999999999999999997643
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-43 Score=404.69 Aligned_cols=309 Identities=19% Similarity=0.173 Sum_probs=197.2
Q ss_pred cchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCC
Q 045363 85 MSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQK 164 (712)
Q Consensus 85 ~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~ 164 (712)
++...+|+.+++|+||+|||||||||++||||.++- ..+.++| .++. .++.
T Consensus 57 inv~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~------------------------~~~~~~~-~~~~----~dp~ 107 (600)
T 3hjr_A 57 LNLWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNV------------------------RPGSKNV-VTGS----DDPT 107 (600)
T ss_dssp CCCHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGB------------------------CSCCBCT-TTSS----SCCC
T ss_pred cCHHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhcc------------------------ccCccee-ecCC----CCCC
Confidence 345689999999999999999999999999997531 1112233 2221 1122
Q ss_pred CCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHH-HHHHhCCCcEEEecc
Q 045363 165 SPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAF-DDAIGDGVDLISISI 242 (712)
Q Consensus 165 ~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai-~~a~~~g~dVIN~S~ 242 (712)
...|.++|||||||||||.. ++. | +.||||+|+|+.+|++++.+ ....+++.|+ +++..++++|||+||
T Consensus 108 p~~~~~gHGThVAGiIAa~~-n~~---g-----~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~ 178 (600)
T 3hjr_A 108 PTDPDTAHGTSVSGIIAAVD-NAI---G-----TKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSY 178 (600)
T ss_dssp CCSTTCCHHHHHHHHHHCCS-SSS---S-----CCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECC
T ss_pred CCCCCCChHHHHHHHHhEeC-CCC---C-----cEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEeccc
Confidence 33457899999999999863 222 1 18999999999999998766 6677777666 667788999999999
Q ss_pred CCCC-CCCccch-----HHHHHHH--hhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEe
Q 045363 243 GGPS-RSYFDDS-----ISIGSFH--AMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTS 314 (712)
Q Consensus 243 G~~~-~~~~~~~-----~~~a~~~--a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 314 (712)
|... .+...+. +..++.. ...+|+++|+||||.+....... +.+.+ .+++..
T Consensus 179 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~------~~~~~------------~g~~~~-- 238 (600)
T 3hjr_A 179 GMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG------YVLNR------------TGNGPK-- 238 (600)
T ss_dssp CCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT------EEEEE------------ESSCCC--
T ss_pred CccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccc------ccccc------------CCCCCC--
Confidence 9762 1111111 2222221 23579999999999764311000 00000 000000
Q ss_pred eeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCC-cccceEEEEecCCchhHHhhccCceEEEEEecCCC
Q 045363 315 GISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMK-KVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPT 393 (712)
Q Consensus 315 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~-~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 393 (712)
+ ....|. +++. ... .++.+||.
T Consensus 239 -------------~-----------------~~~~~~---~d~~~~~~--------------~~IsVgA~---------- 261 (600)
T 3hjr_A 239 -------------L-----------------PFENSN---LDPSNSNF--------------WNLVVSAL---------- 261 (600)
T ss_dssp -------------C-----------------CSSBTT---SSGGGGSS--------------SEEEEEEE----------
T ss_pred -------------C-----------------Cccccc---ccCccccC--------------cceEEeee----------
Confidence 0 000010 0000 000 00111110
Q ss_pred CcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEE---
Q 045363 394 DIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDIL--- 470 (712)
Q Consensus 394 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~--- 470 (712)
...+.++.||++|+.. +++|||.++.
T Consensus 262 -------------------------------------------~~~g~~a~yS~~G~~v--------~~~apg~~~~~~~ 290 (600)
T 3hjr_A 262 -------------------------------------------NADGVRSSYSSVGSNI--------FLSATGGEYGTDT 290 (600)
T ss_dssp -------------------------------------------CTTSSBCTTCCBCTTC--------CEEEECCSCSSSS
T ss_pred -------------------------------------------cCCCCEeecccCCcce--------eeccCCCCCCCCC
Confidence 2345789999999988 8999997632
Q ss_pred -----eeecCCccCC-------------CCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 045363 471 -----AAYSELASVT-------------GLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTAT 532 (712)
Q Consensus 471 -----sa~~~~~~~~-------------~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 532 (712)
+..++..... ..........|..++|||||||||||++|||+|++|+|+++|||++|++||+
T Consensus 291 ~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~TA~ 370 (600)
T 3hjr_A 291 PAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSAT 370 (600)
T ss_dssp CCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCB
T ss_pred cceeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhhCc
Confidence 2111100000 0000122356889999999999999999999999999999999999999999
Q ss_pred CCCCC-CC-------------------C---------CCCCCCCCCcCccccCCCC
Q 045363 533 PMKTK-SD-------------------D---------AELASGSGQINPTKAVHPG 559 (712)
Q Consensus 533 ~~~~~-~~-------------------~---------~~~~~G~G~in~~~A~~~~ 559 (712)
+++.. .| . ....||+|+||+.+|++.+
T Consensus 371 ~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~A 426 (600)
T 3hjr_A 371 RVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELA 426 (600)
T ss_dssp CCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHHH
T ss_pred cCCCCCCcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHHh
Confidence 98754 22 0 2567999999999998743
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-24 Score=243.24 Aligned_cols=97 Identities=24% Similarity=0.384 Sum_probs=78.0
Q ss_pred eeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHh---CCCcEEEeccCCCCCCC---ccchHHHHHHHhhhcCceEEEe
Q 045363 198 ARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIG---DGVDLISISIGGPSRSY---FDDSISIGSFHAMKKGILTACS 271 (712)
Q Consensus 198 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~---~g~dVIN~S~G~~~~~~---~~~~~~~a~~~a~~~Gi~vV~A 271 (712)
+.||||+|+|+.|++. ....+++++|+||++ ++++|||||||.....+ +...+..++.+|..+||+||+|
T Consensus 274 ~~gvAp~a~i~~~~~~----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~vv~A 349 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAP----NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAA 349 (552)
T ss_dssp HHHHCTTSEEEEEECC----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhccCCCCeEEEEEcC----CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 4799999999999974 245789999999998 79999999999874221 1245666777888999999999
Q ss_pred cCCCCCCC--------CccccCCCceEEEceeccC
Q 045363 272 AGNDGPYQ--------GTVENVAPWIMTVAASSID 298 (712)
Q Consensus 272 AGN~g~~~--------~~~~~~~p~vitVga~~~~ 298 (712)
|||+|... ...++.+|+|++||+++..
T Consensus 350 sGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~~ 384 (552)
T 1t1e_A 350 AGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLV 384 (552)
T ss_dssp CCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEE
T ss_pred cCCCCCCCCCCCCcccccCcccCCCEEEEeccccc
Confidence 99999643 3456788999999998753
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=210.62 Aligned_cols=100 Identities=14% Similarity=0.196 Sum_probs=80.8
Q ss_pred eeecCCCeEEEEEeecCCCCChHHHHHHHHHHHh-CCCcEEEeccCCCCC----CCccchHHHHHHHhhhcCceEEEecC
Q 045363 199 RGGVPSARIAMYKVCWSGGCADMDILAAFDDAIG-DGVDLISISIGGPSR----SYFDDSISIGSFHAMKKGILTACSAG 273 (712)
Q Consensus 199 ~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIN~S~G~~~~----~~~~~~~~~a~~~a~~~Gi~vV~AAG 273 (712)
..+||+++++.+++.+..+++.++++++|+||++ ++++|||||||.... ..+.+.+..++.+|..+||+||+|||
T Consensus 90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~AsG 169 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSG 169 (372)
T ss_dssp HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 3578999999999987655778899999999998 899999999998631 12234667777788899999999999
Q ss_pred CCCCCC-------------CccccCCCceEEEceeccC
Q 045363 274 NDGPYQ-------------GTVENVAPWIMTVAASSID 298 (712)
Q Consensus 274 N~g~~~-------------~~~~~~~p~vitVga~~~~ 298 (712)
|+|... ...+..+|+|++||+++..
T Consensus 170 d~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 170 DEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp SBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred CCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 999653 2455778999999998754
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-09 Score=121.20 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=63.3
Q ss_pred eeecCCCeEEEEEeecCCCCChHHHHHHHHHHHh--CCCcEEEeccCCCCCCC---ccchHHHHHHHhhhcCceEEEecC
Q 045363 199 RGGVPSARIAMYKVCWSGGCADMDILAAFDDAIG--DGVDLISISIGGPSRSY---FDDSISIGSFHAMKKGILTACSAG 273 (712)
Q Consensus 199 ~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~--~g~dVIN~S~G~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAG 273 (712)
.+++++..++.+-.... ......++..+++... +-++|||+|||...... +.+.+...+..+..+||.|++|+|
T Consensus 262 ~a~~~~i~~~~~~~~g~-~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASG 340 (544)
T 3edy_A 262 MSAGANISTWVYSSPGR-HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASG 340 (544)
T ss_dssp HHHSTTSEEEEECCCSC-CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hccCCCceEEEEecCCc-ccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 34455666555533211 1122344554444432 46899999999874221 223455666678889999999999
Q ss_pred CCCCCC----------CccccCCCceEEEceecc
Q 045363 274 NDGPYQ----------GTVENVAPWIMTVAASSI 297 (712)
Q Consensus 274 N~g~~~----------~~~~~~~p~vitVga~~~ 297 (712)
|+|... ...++..|||++||+++.
T Consensus 341 D~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 341 DSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp SSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 999643 245678899999999864
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.60 E-value=3.8e-08 Score=86.97 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=56.4
Q ss_pred CcchHHHHHHHHHHhCCccccccceEEEecceeeeEEEEcCHHHHHHhhcCCCeEEEEeCeeeec
Q 045363 10 ISAVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSEEESVVSVFENTRRKL 74 (712)
Q Consensus 10 ~~~~~~h~~~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~i~~l~~~p~V~~V~~~~~~~~ 74 (712)
++.+..|++||.+++++ .....+++|+|++.|+||+++|+++++++|+++|+|.+||+++.++.
T Consensus 50 ~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 50 LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence 44677999999999874 23467999999999999999999999999999999999999998765
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.13 E-value=3.1e-06 Score=69.67 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=43.3
Q ss_pred ccceEEEecceeeeEEEEcCHHHHHHhhcCCCeEEEEeCeeeecccCC
Q 045363 31 RESKIRSYGKSFNGFVARLLPHEAKRLSEEESVVSVFENTRRKLHTTR 78 (712)
Q Consensus 31 ~~~v~~~y~~~~ng~s~~l~~~~i~~l~~~p~V~~V~~~~~~~~~~~~ 78 (712)
..+++|+|++ |+||+++++++++++|+++|+|.+||+++.++++++.
T Consensus 33 g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~~tt~ 79 (80)
T 3cnq_P 33 GGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRALSAT 79 (80)
T ss_dssp TCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEECCC-
T ss_pred CCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEEeeec
Confidence 5789999998 9999999999999999999999999999999987654
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.01 E-value=6.6e-06 Score=73.45 Aligned_cols=62 Identities=8% Similarity=0.013 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHhCCccccccceEEEecceeeeEEEEcCHHHHHHhhcCCCeEEEEeCeeeec
Q 045363 12 AVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSEEESVVSVFENTRRKL 74 (712)
Q Consensus 12 ~~~~h~~~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~i~~l~~~p~V~~V~~~~~~~~ 74 (712)
....|.+++.++... .....+++|+|++.||||++++++++++.|+++|+|.+|++++.++.
T Consensus 62 ~~~~~~~~l~~~~~~-r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 62 QSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp HHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence 455666677665431 11356899999999999999999999999999999999999998765
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=6.9e-05 Score=71.85 Aligned_cols=86 Identities=16% Similarity=0.063 Sum_probs=67.9
Q ss_pred CcCCCCCCCCCCCc-------ccceEEEEecCC-c-----hhHHhhccCceEEEEEecCC-CC----c--ccceeeeEEE
Q 045363 346 NVGACDYGTLSMKK-------VKGKIVYCLGSG-S-----QDYTIDRLQGAGTIVAVDAP-TD----I--AIATLIAGTF 405 (712)
Q Consensus 346 ~~~~c~~~~~~~~~-------~~gkivl~~~~~-~-----~~~~~~~~Ga~g~i~~~~~~-~~----~--~~~~~~p~~~ 405 (712)
....|.+....... .++||+|++|+. | .. +++.+||.++|++|+.. +. + .....||+++
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~-nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~ 160 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIH-LAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIM 160 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHH-HHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHH-HHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEE
Confidence 35689886653322 479999999999 8 66 99999999999999852 11 1 2335799999
Q ss_pred eChhhHHHHHHHHhcCCCceEEEEEee
Q 045363 406 VVPEVGIKIDQYINSTKNPQAVIYKTR 432 (712)
Q Consensus 406 i~~~~g~~l~~~~~~~~~~~~~~~~~~ 432 (712)
|+.++|+.|++++.++...+.+|....
T Consensus 161 Is~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 161 IGNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp ECHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred ECHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 999999999999999888887777654
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=97.78 E-value=4.5e-05 Score=61.91 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=48.4
Q ss_pred chHHHHHHHHHHhCCccccccceEEEec-ceeeeEEEEcCHHHHHHhhcC--CCeEEEEeCeeeec
Q 045363 12 AVKEHHSLLTTAIGDEKLARESKIRSYG-KSFNGFVARLLPHEAKRLSEE--ESVVSVFENTRRKL 74 (712)
Q Consensus 12 ~~~~h~~~~~~~~~~~~~~~~~v~~~y~-~~~ng~s~~l~~~~i~~l~~~--p~V~~V~~~~~~~~ 74 (712)
....|.+|++.. ..++.+.|+ .+|+||++.++++.+++|+++ |.|.+||+++.+..
T Consensus 17 ~~~~~~~~~~~~-------gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~ 75 (76)
T 1v5i_B 17 KIRETKDEVIAE-------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA 75 (76)
T ss_dssp HHHHHHHHHHHH-------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred HHHHHHHHHHhh-------CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence 567788888775 346889994 899999999999999999999 89999999998764
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0016 Score=50.89 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=41.5
Q ss_pred cccccceEEEecceeeeEEEEcCHHHHHHhhcCCCeEEEEeCeeeec
Q 045363 28 KLARESKIRSYGKSFNGFVARLLPHEAKRLSEEESVVSVFENTRRKL 74 (712)
Q Consensus 28 ~~~~~~v~~~y~~~~ng~s~~l~~~~i~~l~~~p~V~~V~~~~~~~~ 74 (712)
+..+.++.++| ..+++++++||++.++.|+++|+|++|+++...+.
T Consensus 19 ~~~gG~i~~~~-~~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~a 64 (65)
T 2z30_B 19 LGIGGHIVYQF-KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVL 64 (65)
T ss_dssp GGGTCEEEEEC-SSSSEEEEEECGGGHHHHHTSTTEEEEEECCEEEE
T ss_pred HHCCCEEEEEe-cCCcEEEEEeCHHHHHHHhcCCCceEEecCcEEEc
Confidence 45678999999 88999999999999999999999999999987653
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.072 Score=46.98 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=55.2
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEecccCCCCeEEEEEEEE-cCCcEEEee
Q 045363 623 SAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWS-DTKHSVKSP 701 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~-~~~~~v~~P 701 (712)
+.+.++.|+|+|+.+..|+..... -++++|..-.+ ++|+++.++|+|.... .+.+++.|.+. ++...+.++
T Consensus 42 ~~~~~~~l~N~g~~~~~f~~~~~~----~F~i~P~~g~L-~pg~~~~i~V~F~P~~---~g~~~~~l~v~~~~g~~~~v~ 113 (122)
T 2ys4_A 42 STQKILLVRNIGNKNAVFHIKTCR----PFSIEPAIGTL-NVGESMQLEVEFEPQS---VGDHSGRLIVCYDTGEKVFVS 113 (122)
T ss_dssp CEEEEEEEECCSSSCEEEEEECCT----TEEEESSEEEE-CTTCEEEEEEEECCSS---SBCCCCBCEEEESSSCEECCE
T ss_pred eEEEEEEEEECCCCCEEEEEecCC----CeEEECCcCEE-CCCCEEEEEEEEEcCC---CccEEEEEEEEECCCCEEEEE
Confidence 677788999999999999877643 37788999888 6899999999999986 34456666554 444555555
Q ss_pred EE
Q 045363 702 IL 703 (712)
Q Consensus 702 ~~ 703 (712)
+.
T Consensus 114 L~ 115 (122)
T 2ys4_A 114 LY 115 (122)
T ss_dssp EC
T ss_pred EE
Confidence 43
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.29 Score=52.97 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=52.0
Q ss_pred CCCCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCCc------ccceeeeEEEeChhhHHHHHHHHh
Q 045363 355 LSMKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTDI------AIATLIAGTFVVPEVGIKIDQYIN 419 (712)
Q Consensus 355 ~~~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~~------~~~~~~p~~~i~~~~g~~l~~~~~ 419 (712)
+...+++|||||+.++.| .. +++..||.|+|++++..... .....+|.+.++.++++.|...+.
T Consensus 108 ~~~~dv~GkIvlv~~g~~~~~~k~~-~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 108 VAGKDLNGKIALIQRGNISFADKVR-NAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TTTSCCTTSEEEEECCSSCHHHHHH-HHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred cCCCCcCceEEEEeCCCCCHHHHHH-HHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 344589999999999987 55 88899999999999864321 134579999999999999999884
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.33 Score=52.91 Aligned_cols=74 Identities=11% Similarity=0.060 Sum_probs=55.8
Q ss_pred CCcccceEEEEecCCch------------------hHHhhccCceEEEEEecCCCC--------c--c-cceeeeEEEeC
Q 045363 357 MKKVKGKIVYCLGSGSQ------------------DYTIDRLQGAGTIVAVDAPTD--------I--A-IATLIAGTFVV 407 (712)
Q Consensus 357 ~~~~~gkivl~~~~~~~------------------~~~~~~~Ga~g~i~~~~~~~~--------~--~-~~~~~p~~~i~ 407 (712)
..+++|||||+.++.|. . ++..+||+|+|+++..... + . ....||++.|+
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~-~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is 202 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAV-AAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAIS 202 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHH-HHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEEC
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHH-HHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEec
Confidence 56899999999987651 2 4778999999999864321 1 1 23569999999
Q ss_pred hhhHHHHHHHHhcCCCceEEEEEe
Q 045363 408 PEVGIKIDQYINSTKNPQAVIYKT 431 (712)
Q Consensus 408 ~~~g~~l~~~~~~~~~~~~~~~~~ 431 (712)
.++++.|...+..+....+++...
T Consensus 203 ~~da~~L~~~l~~g~~~~v~l~~~ 226 (444)
T 3iib_A 203 NPDADLINAMLKRDKEVVISLELG 226 (444)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEEEEe
Confidence 999999999998776555555443
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=90.75 E-value=0.17 Score=55.28 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=26.6
Q ss_pred CCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecC
Q 045363 437 STAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSE 475 (712)
Q Consensus 437 ~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~ 475 (712)
...+.++.||++|+.. ||+|||.+|+++++.
T Consensus 181 ~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 181 DSNLDHAAFSQYTDQV--------EISGPGEAILSTVTV 211 (441)
T ss_dssp CTTCCBCTTSCCCTTE--------EEEEECSSEEEECST
T ss_pred CCCCCCCccccCCCce--------EEEeccCCeeccccC
Confidence 3456899999999876 999999999999863
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.93 E-value=0.29 Score=59.56 Aligned_cols=26 Identities=8% Similarity=0.308 Sum_probs=23.8
Q ss_pred CCCCCCCcEEEEEcCCCCCCCCCCcC
Q 045363 93 SSKAQSNIIVGLLDTGIWVESPSFND 118 (712)
Q Consensus 93 ~~~~G~gv~VgVIDtGid~~Hp~f~~ 118 (712)
..+.|+||+|||+|||||+.+|.|.-
T Consensus 31 P~ydGrgv~iai~DtGVDP~a~glq~ 56 (1354)
T 3lxu_X 31 PEYDGRDVTIAIFDSGVDPRATGLET 56 (1354)
T ss_dssp TTCSSTTCEEEEEESCCCTTSTTSSC
T ss_pred CCCCCCccEEEEEeCCCCCCCCccee
Confidence 37899999999999999999999973
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.70 E-value=1.9 Score=36.72 Aligned_cols=94 Identities=13% Similarity=0.160 Sum_probs=58.6
Q ss_pred CCCCceeeeecCCCceeEEEEEEEEEcCCCCeeEEEEEeC-CCCcEEEEeeceEEeecCCcEEEEEEEEEecccCCCCeE
Q 045363 607 LNYPSMHFHFTNESSISAIFRRTVTNVGFAKSLYKATVHS-PKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASIL 685 (712)
Q Consensus 607 ln~ps~~~~~~~~~~~~~~~~rtv~n~~~~~~ty~~~~~~-~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~ 685 (712)
++...+-++...-+. ..+.+.+++|.|+.+..|+..... ..+...+++|..-.+ ++|++++++|++.+... +. +
T Consensus 12 ~~~~~ldFG~v~~g~-~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~~--g~-f 86 (112)
T 2e6j_A 12 FNFELLDIGKVFTGS-AHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSIIL--GN-F 86 (112)
T ss_dssp ESCSEEEEEEEESSC-CEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCCC--EE-E
T ss_pred ECcccEecEeEEECC-EEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECCCc--ce-E
Confidence 333444444443121 567788999999999999984311 112346778998888 68999999999998752 33 3
Q ss_pred EEEEEEE-cC-CcEEEeeEEEE
Q 045363 686 SALLEWS-DT-KHSVKSPILVY 705 (712)
Q Consensus 686 ~G~i~~~-~~-~~~v~~P~~~~ 705 (712)
.=.|++. .+ ...+++-+-+.
T Consensus 87 ~~~i~v~~~g~~~~~~L~i~G~ 108 (112)
T 2e6j_A 87 EEEFLVNVNGSPEPVKLTIRGC 108 (112)
T ss_dssp EEEECEEESSCSSCCCEEEEEE
T ss_pred EEEEEEEECCCCceEEEEEEEE
Confidence 4456554 23 33344444433
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=87.30 E-value=3.3 Score=35.89 Aligned_cols=58 Identities=9% Similarity=0.109 Sum_probs=47.2
Q ss_pred CceeEEEEEEEEEcCCCCeeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEeccc
Q 045363 620 SSISAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQ 679 (712)
Q Consensus 620 ~~~~~~~~rtv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~ 679 (712)
+...-..+..+.|....+.+|+++++..+++++. .+..+.+ ++++..++.|.|.....
T Consensus 29 G~I~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~~ 86 (118)
T 2r39_A 29 GEVENTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGADPD 86 (118)
T ss_dssp CSEEEEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEECGG
T ss_pred CeEEEEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEEChH
Confidence 4457788899999999999999999988777654 2456777 78999999999988763
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.77 E-value=7.2 Score=34.89 Aligned_cols=84 Identities=13% Similarity=-0.007 Sum_probs=60.4
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEeCC----CCcEEEEeeceEEeecCCcEEEEEEEEEeccc------CCCCeEEEEEEEE
Q 045363 623 SAIFRRTVTNVGFAKSLYKATVHSP----KGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQ------SGASILSALLEWS 692 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty~~~~~~~----~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~------~~~~~~~G~i~~~ 692 (712)
..+.+++++|.|.-+.+|++..... ..--++++|..-++ .+|++.+++|++..++. ....-++--|++.
T Consensus 44 ~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL~ 122 (140)
T 3qbt_B 44 LQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLH 122 (140)
T ss_dssp CEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEEE
T ss_pred eeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEEEE
Confidence 5677889999999999999985421 11236778998888 79999999999986541 1112345556654
Q ss_pred -cCCcEEEeeEEEEec
Q 045363 693 -DTKHSVKSPILVYKQ 707 (712)
Q Consensus 693 -~~~~~v~~P~~~~~~ 707 (712)
++..+..+|+.+.+.
T Consensus 123 Ve~G~d~fI~v~g~~~ 138 (140)
T 3qbt_B 123 LDRGKDYFLTISGNYL 138 (140)
T ss_dssp ETTSCEEEEEEEEEEC
T ss_pred eecCCcEEEEEecccc
Confidence 577888999887654
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=82.68 E-value=1.2 Score=50.61 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=47.9
Q ss_pred CcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC-c-----------------------c------------
Q 045363 358 KKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD-I-----------------------A------------ 396 (712)
Q Consensus 358 ~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~-~-----------------------~------------ 396 (712)
.+++|||||+.++.| .. ++..+||.|+|++++.... . +
T Consensus 128 vdv~GkIvlv~~g~~~~~~K~~-~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~ 206 (640)
T 3kas_A 128 TPVNGSIVIVRAGKITFAEKVA-NAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRS 206 (640)
T ss_dssp SCCTTSEEEEESCSSCHHHHHH-HHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSS
T ss_pred cccCCcEEEEecCCCCHHHHHH-HHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCcccccccccccccc
Confidence 579999999999987 55 8899999999999875310 0 0
Q ss_pred -cceeeeEEEeChhhHHHHHHHHh
Q 045363 397 -IATLIAGTFVVPEVGIKIDQYIN 419 (712)
Q Consensus 397 -~~~~~p~~~i~~~~g~~l~~~~~ 419 (712)
..-.||++.|+.++++.|+..+.
T Consensus 207 ~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 207 SGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCCSSCEEECCHHHHHHHHTTEE
T ss_pred cCCCCCCEEecCHHHHHHHHHHcc
Confidence 01258999999999999988664
|
| >2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=81.27 E-value=8 Score=37.40 Aligned_cols=79 Identities=11% Similarity=0.048 Sum_probs=54.2
Q ss_pred eEEEEEEEEEcCCCCeeEEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEecccCCCCeEEEEEEEEc----C-C-c
Q 045363 623 SAIFRRTVTNVGFAKSLYKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASILSALLEWSD----T-K-H 696 (712)
Q Consensus 623 ~~~~~rtv~n~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~G~i~~~~----~-~-~ 696 (712)
..+.+++++|.|+.+.+++... .|+.+++...|. .+ .+|++.+++|+++......-+...+.|++.. + . .
T Consensus 20 ~~~~~~~i~N~g~~pl~i~~~~-~p~~~~~~~~~~--~I-~PG~~g~I~vt~~~~~~~~~G~~~~~i~v~~~~~~~~~~~ 95 (220)
T 2qsv_A 20 EGVVRLVVNNTDESDLQVAVVS-LPSFVSLDDRAF--RL-QAREPRELNLSLAVPRNMPPGMKDEPLVLEVTSPETGKKA 95 (220)
T ss_dssp CCEEEEEEEECSSSCEEEEEEE-CCTTEECSCCEE--EE-CSSSCEEEEEEECCCTTCCSEEEEEEEEEEEECTTTCCEE
T ss_pred cceEEEEEEeCCCCceEEEecc-CCCceEeeeCcc--ee-CCCCceEEEEEEcchhcccCCceeeEEEEEEEcCCCCccc
Confidence 5566889999999998888643 366655544444 44 7899999999998887543455677777653 2 2 2
Q ss_pred EEEeeEEEE
Q 045363 697 SVKSPILVY 705 (712)
Q Consensus 697 ~v~~P~~~~ 705 (712)
..++|+...
T Consensus 96 ~~~i~v~g~ 104 (220)
T 2qsv_A 96 VDSVMVSLP 104 (220)
T ss_dssp EEEEEEEEE
T ss_pred ccEEEEEEE
Confidence 447776653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 712 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 2e-42 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 6e-16 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 3e-07 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 2e-12 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 8e-08 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 4e-12 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 1e-05 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 4e-12 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 8e-07 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 5e-12 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 1e-07 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 2e-10 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 3e-10 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 8e-09 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 3e-07 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 2e-08 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 5e-08 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 4e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 1e-04 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 5e-07 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 1e-05 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 157 bits (397), Expect = 2e-42
Identities = 79/465 (16%), Positives = 132/465 (28%), Gaps = 67/465 (14%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
N + ++D+G VTG N
Sbjct: 22 GNRTICIIDSGYDRSHNDL------------NANNVTGTNN------------------- 50
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
+ P + + HGTH + T A + G+ +A I + KV G
Sbjct: 51 SGTGNWYQPGNNNAHGTHVAGTIAAIA-NNEGVVGVMPN------QNANIHIVKVFNEAG 103
Query: 218 CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGP 277
L A D + ++ S + G+L +AGN G
Sbjct: 104 WGYSSSLVAAIDTCVN-SGGANVVTMSLGGSGSTTTERNALNTHYNNGVLLIAAAGNAGD 162
Query: 278 YQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAA 337
+ +M+VAA + + + + SG S
Sbjct: 163 SSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILS-------------TV 209
Query: 338 NVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIAI 397
V ++ S V + G+ I+ T +
Sbjct: 210 TVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSC 269
Query: 398 ATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGP--QKITL 455
+ +V VG + Y + I +S P Q L
Sbjct: 270 GNMANKICLVERVGNQGSSYPE-------INSTKACKTAGAKGIIVYSNSALPGLQNPFL 322
Query: 456 NILKPDIAAPGLDILAAYSE----LASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYV 511
DI P + + A + ++ + +GTSMA PH + A V
Sbjct: 323 VDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLV 382
Query: 512 KSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556
S+HP+ S + +++AL TA + D + +G G IN A
Sbjct: 383 WSYHPECSASQVRAALNATADDLSVAGRDNQ--TGYGMINAVAAK 425
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 79.3 bits (194), Expect = 6e-16
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 460 PDIAAPGLDILAAYSELASVTGLPGDRRIVP-----FNILSGTSMACPHAAAAAAYVKSF 514
+ APG+ IL+ S+ + + ++ GTSMA PH A +
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 515 HPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556
P+ P I+ L TA D + G G + A+
Sbjct: 398 FPNAKPWQIRKLLENTAFDFNGNGWDHDT--GYGLVKLDAAL 437
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 51.6 bits (122), Expect = 3e-07
Identities = 35/208 (16%), Positives = 59/208 (28%), Gaps = 46/208 (22%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
+NIIV ++DTG+ P +G+ + G
Sbjct: 154 TNIIVAVVDTGVDGTHPDL------------EGQVIAGYRPAFD---------------- 185
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCW--- 214
+ GTH + T A + G P A+I +
Sbjct: 186 EELPAGTDSSYGGSAGTHVAGTIAAK---------KDGKGIVGVAPGAKIMPIVIFDDPA 236
Query: 215 ----SGGCADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTAC 270
+G D + A A G +++ S GG SY + +++A
Sbjct: 237 LVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFDYAMEHGVVMVVSAG 296
Query: 271 SAGNDGPYQGTVENVAPWIMTVAASSID 298
+ N P ++ VAA
Sbjct: 297 N--NTSDSHHQYPAGYPGVIQVAALDYY 322
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 66.1 bits (160), Expect = 2e-12
Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 26/124 (20%)
Query: 433 VVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFN 492
V T ASFS G DI APG+++ + Y +
Sbjct: 171 VGATDQNNNRASFSQYGA--------GLDIVAPGVNVQSTYPGSTYAS------------ 210
Query: 493 ILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINP 552
L+GTSMA PH A AAA VK +P WS I++ L TAT + + + GSG +N
Sbjct: 211 -LNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNL-----YGSGLVNA 264
Query: 553 TKAV 556
A
Sbjct: 265 EAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 51.9 bits (123), Expect = 8e-08
Identities = 61/298 (20%), Positives = 100/298 (33%), Gaps = 58/298 (19%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S + V +LDTGI P N +G GA+F
Sbjct: 24 SGVKVAVLDTGIS-THPDLNIRG--------------GASFV------------------ 50
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVC-WSG 216
+ S D +GHGTH + T A G PSA + KV SG
Sbjct: 51 ---PGEPSTQDGNGHGTHVAGTIA---------ALNNSIGVLGVAPSAELYAVKVLGASG 98
Query: 217 GCADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDG 276
+ I + A +G+ + ++S+G P ++ A +G+L ++GN G
Sbjct: 99 SGSVSSIAQGLEWAGNNGMHVANLSLGSP---SPSATLEQAVNSATSRGVLVVAASGNSG 155
Query: 277 PYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAM-YPLTNGAR 335
+ M V A+ + + + G G+ +N S Y NG
Sbjct: 156 AGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTS 215
Query: 336 AANVTAEIYGNVG--ACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDA 391
A T + G + S +++ + + + L G+G + A A
Sbjct: 216 MA--TPHVAGAAALVKQKNPSWSNVQIRNHLK----NTATSLGSTNLYGSGLVNAEAA 267
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 65.7 bits (158), Expect = 4e-12
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 458 LKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPD 517
+KPD+ APG IL+A S LA + + + + GTSMA P A A ++
Sbjct: 216 IKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYMGGTSMATPIVAGNVAQLREHFVK 274
Query: 518 -----WSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556
P+ +K+AL+ A + + G G++ K++
Sbjct: 275 NRGITPKPSLLKAALIAGAADIGLGYPNGN--QGWGRVTLDKSL 316
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 45.6 bits (106), Expect = 1e-05
Identities = 37/204 (18%), Positives = 60/204 (29%), Gaps = 42/204 (20%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
IV + DTG+ + ++GK R N
Sbjct: 22 QGQIVAVADTGLDTGRNDSSMH------EAFRGKITALYALGRTN--------------- 60
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
+ DT+GHGTH A T +G P A + + SGG
Sbjct: 61 -------NANDTNGHGTHV-----------AGSVLGNGSTNKGMAPQANLVFQSIMDSGG 102
Query: 218 ---CADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGN 274
++ F A G + + S G + + K + +AGN
Sbjct: 103 GLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGN 162
Query: 275 DGPYQGTVENVAPWIMTVAASSID 298
+GP GT+ + + +
Sbjct: 163 EGPNGGTISAPGTAKNAITVGATE 186
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 64.9 bits (157), Expect = 4e-12
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 26/124 (20%)
Query: 433 VVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSELASVTGLPGDRRIVPFN 492
V ++ ASFSS GP + D+ APG+ I + PG++ +
Sbjct: 177 VGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YG 215
Query: 493 ILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINP 552
+GTSMA PH A AAA + S HP+W+ ++S+L T T + G G IN
Sbjct: 216 AYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL-----GDSFYYGKGLINV 270
Query: 553 TKAV 556
A
Sbjct: 271 QAAA 274
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 48.7 bits (115), Expect = 8e-07
Identities = 52/301 (17%), Positives = 97/301 (32%), Gaps = 58/301 (19%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
SN+ V ++D+GI P G GA+
Sbjct: 24 SNVKVAVIDSGIDSSHPDLKVAG--------------GASMV------------------ 51
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
++ D + HGTH + G G PSA + KV + G
Sbjct: 52 --PSETNPFQDNNSHGTHVA---------GTVAALNNSIGVLGVAPSASLYAVKVLGADG 100
Query: 218 CADM-DILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGND- 275
I+ + AI + +D+I++S+GGP ++ A+ G++ +AGN+
Sbjct: 101 SGQYSWIINGIEWAIANNMDVINMSLGGP---SGSAALKAAVDKAVASGVVVVAAAGNEG 157
Query: 276 ---GPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNG--MRTSGISINTFSPRKAMYPL 330
P ++ V A + + +G + G+SI + P
Sbjct: 158 TSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKYGAY 217
Query: 331 TNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVD 390
+ A+ A + + + + +V+ + + + G G I
Sbjct: 218 NGTSMASPHVAGAAALILSK-HPNWTNTQVRSSLE----NTTTKLGDSFYYGKGLINVQA 272
Query: 391 A 391
A
Sbjct: 273 A 273
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 65.0 bits (157), Expect = 5e-12
Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 26/142 (18%)
Query: 415 DQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYS 474
N+ P V + ASFSS G + ++ APG + + Y
Sbjct: 158 SGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTYP 209
Query: 475 ELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPM 534
T L+GTSMA PH A AAA + S HP+ S + +++ L +TAT +
Sbjct: 210 TNTYAT-------------LNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL 256
Query: 535 KTKSDDAELASGSGQINPTKAV 556
+ G G IN A
Sbjct: 257 GSSFY-----YGKGLINVEAAA 273
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 51.5 bits (122), Expect = 1e-07
Identities = 60/300 (20%), Positives = 98/300 (32%), Gaps = 57/300 (19%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
+N+ V +LDTGI P N G GA+F
Sbjct: 24 ANVKVAVLDTGIQASHPDLNVVG--------------GASFV------------------ 51
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
+ D +GHGTH + T A G PS + KV S G
Sbjct: 52 ---AGEAYNTDGNGHGTHVAGTVA---------ALDNTTGVLGVAPSVSLYAVKVLNSSG 99
Query: 218 CADM-DILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDG 276
I++ + A +G+D+I++S+GG S S ++ + A ++GN G
Sbjct: 100 SGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSG 159
Query: 277 -PYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNG--MRTSGISINTFSPRKAMYPLTNG 333
++ V A + + +G + G + + P Y NG
Sbjct: 160 STNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTNT-YATLNG 218
Query: 334 ARAANVTAEIYGNVGA--CDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDA 391
A + + G + LS +V+ ++ S + G G I A
Sbjct: 219 TSMA--SPHVAGAAALILSKHPNLSASQVRNRLS----STATYLGSSFYYGKGLINVEAA 272
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.2 bits (144), Expect = 2e-10
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 490 PFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELAS---- 545
+GTS + P AA A + + + ++ ++ T+ P +DD
Sbjct: 252 CTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRK 311
Query: 546 -----GSGQINPTKAV 556
G G ++ V
Sbjct: 312 VSHSYGYGLLDAGAMV 327
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 59.9 bits (143), Expect = 3e-10
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 459 KPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDW 518
+I+APG + + + +N +SGTSMA PH + AA + + +P
Sbjct: 224 DIEISAPGSSVYSTWYNGG-------------YNTISGTSMATPHVSGLAAKIWAENPSL 270
Query: 519 SPAAIKSALMTTATPMKTKSDDA-----ELASGSGQIN 551
S ++S L A + K + ASG G
Sbjct: 271 SNTQLRSNLQERAKSVDIKGGYGAAIGDDYASGFGFAR 308
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 55.0 bits (131), Expect = 8e-09
Identities = 36/155 (23%), Positives = 51/155 (32%), Gaps = 30/155 (19%)
Query: 402 AGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPD 461
G+ VV G + + VI V +ASFS+ G D
Sbjct: 154 KGSVVVAAAGNNGSSTTFEPASYENVIA---VGAVDQYDRLASFSNYGTW--------VD 202
Query: 462 IAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPA 521
+ AP + + +SGTSMA PH A AA + S +
Sbjct: 203 VVAP-------------GVDIVSTITGNRYAYMSGTSMASPHVAGLAALLAS--QGRNNI 247
Query: 522 AIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556
I+ A+ TA + G+IN AV
Sbjct: 248 EIRQAIEQTADKISGTGTY----FKYGRINSYNAV 278
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 50.3 bits (119), Expect = 3e-07
Identities = 41/199 (20%), Positives = 70/199 (35%), Gaps = 45/199 (22%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S + ++DTG+ P + GK + G +F +
Sbjct: 31 SGQEIAVIDTGVDYTHPDLD------------GKVIKGYDFVDNDYD------------- 65
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
P+D + HGTH + AA ET + G+A RI + G
Sbjct: 66 --------PMDLNNHGTHVAGIAAAETNNATGIAGMAPN--------TRILAVRALDRNG 109
Query: 218 CADM-DILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDG 276
+ DI A A G ++I++S+G + ++ +A KG + +AGN+G
Sbjct: 110 SGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENA---VNYAWNKGSVVVAAAGNNG 166
Query: 277 PYQGTVENVAPWIMTVAAS 295
++ V A
Sbjct: 167 SSTTFEPASYENVIAVGAV 185
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.4 bits (129), Expect = 2e-08
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 495 SGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELAS--------- 545
GTS A P AA + +P+ + ++ + +A ++ +D S
Sbjct: 261 GGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHR 320
Query: 546 -GSGQINPTKAV 556
G G+I+ K +
Sbjct: 321 YGFGKIDAHKLI 332
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 52.4 bits (124), Expect = 5e-08
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 495 SGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQIN 551
SGTSMA PH A AAY+ + + +A + + TA + G +N
Sbjct: 221 SGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKGDLSNI------PFGTVN 270
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 49.7 bits (117), Expect = 4e-07
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 495 SGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTK 554
SGTSMA PH A A + S S + I++A+ TA + G++N K
Sbjct: 222 SGTSMATPHVAGVAGLLAS--QGRSASNIRAAIENTADKISGTGTY----WAKGRVNAYK 275
Query: 555 AV 556
AV
Sbjct: 276 AV 277
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 39/196 (19%), Positives = 64/196 (32%), Gaps = 42/196 (21%)
Query: 98 SNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157
S + ++DTG+ P GK V G +F +
Sbjct: 30 SGAKIAIVDTGVQSNHPDL------------AGKVVGGWDFVDNDST------------- 64
Query: 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG 217
P + +GHGTH + AA T + G A P A I +V + G
Sbjct: 65 --------PQNGNGHGTHCAGIAAAVTNNSTGIAGTA--------PKASILAVRVLDNSG 108
Query: 218 CA-DMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDG 276
+ A G +IS+S+GG + +++ + A +AGN
Sbjct: 109 SGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVNYAWNKGSVVVAAAGNAGNTA 168
Query: 277 PYQGTVENVAPWIMTV 292
P + A + +
Sbjct: 169 PNYPAYYSNAIAVAST 184
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 50.0 bits (118), Expect = 5e-07
Identities = 38/290 (13%), Positives = 70/290 (24%), Gaps = 22/290 (7%)
Query: 155 NALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCW 214
N L Q + GE + + A +
Sbjct: 51 NGLASVNTQTIQTGSSNGDYSDDQQGQGEWDLDSQSIVGS-------AGGAVQQLLFYMA 103
Query: 215 -SGGCADMDILAAFDDAIGDGVDLISISIGGPSRSYFDDSISIGSFH-----AMKKGILT 268
+ + AF+ A+ D V + G + + ++ + A +G
Sbjct: 104 DQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTF 163
Query: 269 ACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGISINTFSPRKAMY 328
+ S+G++G Y+ + V AV TS + + +
Sbjct: 164 SVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGAYSNET------ 217
Query: 329 PLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVA 388
+ +++ G D + D QG G ++
Sbjct: 218 ---VWNEGLDSNGKLWATGGGYSVYESKPSWQSVVSGTPGRRLLPDISFDAAQGTGALIY 274
Query: 389 VDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTST 438
T +A V NS P A Y S
Sbjct: 275 NYGQLQQIGGTSLASPIFVGLWARLQSANSNSLGFPAASFYSAISSTPSL 324
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 45.5 bits (106), Expect = 1e-05
Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 8/131 (6%)
Query: 152 NLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYK 211
+L + Q V DG + G + +A A P A+IA+Y
Sbjct: 44 QYFASLGVSAPQVVSVSVDGATNQPTGDPNGPDGEVELDIEVAGALA----PGAKIAVYF 99
Query: 212 VCWSGGCADMDILAAFDDAIGDGVDLISISIGGPSRSY---FDDSISIGSFHAMKKGILT 268
+ I A D ++SIS GGP S+ +++ A G+
Sbjct: 100 APNTDAGFLNAITTAVHDPT-HKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTV 158
Query: 269 ACSAGNDGPYQ 279
+AG+ G
Sbjct: 159 LAAAGDSGSTD 169
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 712 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 97.99 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 97.38 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.69 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 89.22 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=2e-51 Score=475.01 Aligned_cols=341 Identities=22% Similarity=0.238 Sum_probs=253.3
Q ss_pred ccceEEEecceeeeEEEEcCHHHH----HH--hhcCCCeEEEEeCeeeecccC---------------------------
Q 045363 31 RESKIRSYGKSFNGFVARLLPHEA----KR--LSEEESVVSVFENTRRKLHTT--------------------------- 77 (712)
Q Consensus 31 ~~~v~~~y~~~~ng~s~~l~~~~i----~~--l~~~p~V~~V~~~~~~~~~~~--------------------------- 77 (712)
..++++++ ..++.+.++++...+ +. +.++|+|++|||+..+++...
T Consensus 52 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (671)
T d1r6va_ 52 NGKVVLEL-PQIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEE 130 (671)
T ss_dssp TCEEEEEE-GGGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSST
T ss_pred CCEEEEEe-cccceEEEEcCchhHHHHHHHHHHhcCCCceEECcceeEeeccccccCCCccccccccccccccccCcCcc
Confidence 45667777 566777888764322 22 335799999999865543210
Q ss_pred ---CCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCC
Q 045363 78 ---RTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLD 154 (712)
Q Consensus 78 ---~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~ 154 (712)
..|.+-.+.+..+|....+|+||+|||||||||++||+|.+.. +..+++..+
T Consensus 131 ~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~~Hpdl~~~~-------------------------~~~~~~~~~ 185 (671)
T d1r6va_ 131 LSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHPDLEGQV-------------------------IAGYRPAFD 185 (671)
T ss_dssp TGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTSGGGTTTB-------------------------CCEEEGGGT
T ss_pred ccccCcChhhcCccHHHHhcCCCCCCEEEEEcCCcCCCChhhcCCc-------------------------ccCcccccc
Confidence 1233333333345444679999999999999999999997531 122222011
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecC------CC-CChHHHHHHH
Q 045363 155 NALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWS------GG-CADMDILAAF 227 (712)
Q Consensus 155 ~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~------~g-~~~~~i~~ai 227 (712)
+. .....++.|..+|||||||||+|+.++ . | +.||||+|+|+++|++++ .+ .....+++||
T Consensus 186 ~~---~~~~~~~~d~~gHGT~VAGiiaa~~~~-~---g-----~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai 253 (671)
T d1r6va_ 186 EE---LPAGTDSSYGGSAGTHVAGTIAAKKDG-K---G-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGI 253 (671)
T ss_dssp EE---ECTTCBCCTTCSHHHHHHHHHHCCCSS-S---S-----CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHH
T ss_pred CC---CCCCCcCcccCCCCccccceeeeeccc-c---c-----eeeecCcceEEEEEecccccccCCCCcccHHHHHHHH
Confidence 10 001134567889999999999997532 1 1 289999999999999975 23 5667899999
Q ss_pred HHHHhCCCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCC-CccccCCCceEEEceeccCceeEEEEE
Q 045363 228 DDAIGDGVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ-GTVENVAPWIMTVAASSIDRKFVTAVK 306 (712)
Q Consensus 228 ~~a~~~g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~ 306 (712)
+||+++|++|||||||+.. ....+..++..+.++|+++|+||||++.+. ...++..|++|+|||++...
T Consensus 254 ~~a~~~g~~Vin~S~g~~~---~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~------- 323 (671)
T d1r6va_ 254 IWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG------- 323 (671)
T ss_dssp HHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET-------
T ss_pred HHHHhCCCcEEeccccccc---CChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCC-------
Confidence 9999999999999999863 345666777789999999999999998654 45677889999999875320
Q ss_pred eCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEE
Q 045363 307 LGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTI 386 (712)
Q Consensus 307 ~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i 386 (712)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCC
Q 045363 387 VAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPG 466 (712)
Q Consensus 387 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 466 (712)
....++.||+|||.. ||+|||
T Consensus 324 ---------------------------------------------------~~~~~a~fS~~g~~~--------dv~APG 344 (671)
T d1r6va_ 324 ---------------------------------------------------GTFRVAGFSSRSDGV--------SVGAPG 344 (671)
T ss_dssp ---------------------------------------------------TEEEECSSSCCCTTE--------EEEEEC
T ss_pred ---------------------------------------------------CcceeeeccCCCCCc--------eEEecC
Confidence 012578999999987 999999
Q ss_pred CcEEeeecCCccCCCC-----CCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCC
Q 045363 467 LDILAAYSELASVTGL-----PGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDA 541 (712)
Q Consensus 467 ~~I~sa~~~~~~~~~~-----~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~ 541 (712)
++|+++++........ ........|..++|||||||||||++|||+|++|+|+++|||++|++||+++... ..
T Consensus 345 ~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~--g~ 422 (671)
T d1r6va_ 345 VTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN--GW 422 (671)
T ss_dssp SSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS--SC
T ss_pred CCeEeecCCCCccccccccccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC--CC
Confidence 9999998753221111 0112245799999999999999999999999999999999999999999988763 35
Q ss_pred CCCCCCCCcCccccCCCCe
Q 045363 542 ELASGSGQINPTKAVHPGL 560 (712)
Q Consensus 542 ~~~~G~G~in~~~A~~~~l 560 (712)
+..||||+||+.+|++..+
T Consensus 423 ~~~~G~G~vna~~Av~~~~ 441 (671)
T d1r6va_ 423 DHDTGYGLVKLDAALQGPL 441 (671)
T ss_dssp BTTTBTCBCCHHHHHHCCC
T ss_pred CCCcccChhCHHHHhhCcC
Confidence 7889999999999998544
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=3.1e-49 Score=410.61 Aligned_cols=268 Identities=28% Similarity=0.354 Sum_probs=219.5
Q ss_pred CCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCC
Q 045363 78 RTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157 (712)
Q Consensus 78 ~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~ 157 (712)
+.|.+..++++.+|+++++|+||+|||||||||++||+|.+ +++..++| ....
T Consensus 11 ~qw~l~~i~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~-------------------------~~~~~~~~-~~~~- 63 (280)
T d1dbia_ 11 YQYGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDG-------------------------KVIKGYDF-VDND- 63 (280)
T ss_dssp HCCTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTT-------------------------TEEEEEET-TTTB-
T ss_pred cccChhhCCHHHHHhccCCCCCeEEEEEccCcCCCChhhcC-------------------------Ceeecccc-cCCC-
Confidence 35767777778999999999999999999999999999964 34555566 3221
Q ss_pred CCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCc
Q 045363 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVD 236 (712)
Q Consensus 158 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~d 236 (712)
..+.|..+|||||||+|+|...+.. .+.||||+|+|+.+|+++..+ +...++++||+|++++|++
T Consensus 64 ------~~~~d~~~HGT~vag~i~~~~~~~~--------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~ 129 (280)
T d1dbia_ 64 ------YDPMDLNNHGTHVAGIAAAETNNAT--------GIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAE 129 (280)
T ss_dssp ------SCCCCSSSHHHHHHHHHHCCCSSSS--------SCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCS
T ss_pred ------CccccccccccceeEeeeccccCCC--------ceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCc
Confidence 3567889999999999998864422 238999999999999998766 7889999999999999999
Q ss_pred EEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeee
Q 045363 237 LISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGI 316 (712)
Q Consensus 237 VIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 316 (712)
|||||||... ..+....+...+.++|+++|+||||+|......+...+++|+|||.+.+
T Consensus 130 iin~S~g~~~---~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~~------------------ 188 (280)
T d1dbia_ 130 VINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY------------------ 188 (280)
T ss_dssp EEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT------------------
T ss_pred Eeeccccccc---cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecCC------------------
Confidence 9999999864 2344455667889999999999999998777778888999999986432
Q ss_pred eeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcc
Q 045363 317 SINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIA 396 (712)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 396 (712)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T d1dbia_ 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCC
Q 045363 397 IATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSEL 476 (712)
Q Consensus 397 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 476 (712)
+.++.||++||.. |++|||.+|++....
T Consensus 189 -------------------------------------------~~~a~~S~~g~~~--------d~~apg~~i~~~~~~- 216 (280)
T d1dbia_ 189 -------------------------------------------DRLASFSNYGTWV--------DVVAPGVDIVSTITG- 216 (280)
T ss_dssp -------------------------------------------SCBCTTBCCSTTC--------CEEEECSSEEEEETT-
T ss_pred -------------------------------------------CCcCCcCCCCCcc--------cccCCccceeccccC-
Confidence 3678999999976 999999999998764
Q ss_pred ccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccC
Q 045363 477 ASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556 (712)
Q Consensus 477 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~ 556 (712)
..|..++|||||||+|||++|||++. .+++.+||++|++||+++.. .+..||+|+||+++||
T Consensus 217 ------------~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~----~~~~~G~G~ln~~~Al 278 (280)
T d1dbia_ 217 ------------NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG----TGTYFKYGRINSYNAV 278 (280)
T ss_dssp ------------TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT----BTTTBSSEECCHHHHH
T ss_pred ------------cceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC----CCCcCCCCeEcHHHHc
Confidence 45899999999999999999999995 55899999999999998876 5677999999999998
Q ss_pred C
Q 045363 557 H 557 (712)
Q Consensus 557 ~ 557 (712)
+
T Consensus 279 ~ 279 (280)
T d1dbia_ 279 T 279 (280)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=4.5e-49 Score=435.45 Aligned_cols=382 Identities=20% Similarity=0.256 Sum_probs=240.5
Q ss_pred CccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCC
Q 045363 79 TWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALD 158 (712)
Q Consensus 79 s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~ 158 (712)
+|.+-.+.+..+|+ .+|+||+|||||||||++||+|+++ ++..++|...
T Consensus 5 ~wg~~~i~a~~~~~--~~G~gv~VaviDtGid~~Hp~~~~~-------------------------~~~~~~~~~~---- 53 (435)
T d1v6ca_ 5 PWGQTFVGATVLSD--SQAGNRTICIIDSGYDRSHNDLNAN-------------------------NVTGTNNSGT---- 53 (435)
T ss_dssp CHHHHHTTGGGSCC--TTGGGCEEEEEESCCCTTSTTTTTS-------------------------EEEECCCTTS----
T ss_pred CccHhhcCcchhhh--cCCCCcEEEEEcCCCCCCChhhccC-------------------------eeeeeccCCC----
Confidence 45555555556776 4899999999999999999999753 2333333121
Q ss_pred CCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecC--CCeEEEEEeecCCC-CChHHHHHHHHHHHh-CC
Q 045363 159 PNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVP--SARIAMYKVCWSGG-CADMDILAAFDDAIG-DG 234 (712)
Q Consensus 159 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP--~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~-~g 234 (712)
.+...+.|++||||||||||||+.++ .| +.|||| +++|+.+|++.... +...++++||+++++ .+
T Consensus 54 --~~~~~~~d~~gHGThvAgiiag~~~~----~g-----~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~ 122 (435)
T d1v6ca_ 54 --GNWYQPGNNNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGG 122 (435)
T ss_dssp --CCTTCCCSSCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTC
T ss_pred --CCCCCCCCCCCcHHHHHHHHhccCCC----Cc-----eEEEecccCceeeeeecccccccchhhhhhhHHHHHhhccc
Confidence 12245678899999999999998633 12 289999 89999999998755 677789999999986 59
Q ss_pred CcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceE-
Q 045363 235 VDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRT- 313 (712)
Q Consensus 235 ~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~- 313 (712)
++|||+|||... ....+..++..+.++|+++|+||||+|....+.++..+++|+||+++.++....+..++....+
T Consensus 123 ~~vin~S~g~~~---~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~ 199 (435)
T d1v6ca_ 123 ANVVTMSLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEIS 199 (435)
T ss_dssp CSEEEECCCBSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEE
T ss_pred ceEEecccCCCC---CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEe
Confidence 999999999874 2345556677888999999999999999888889999999999998776433211111111111
Q ss_pred -eeeeeecCCC-CCceee-eEeccccccccc---ccccCcCCC--------------------CCCCCCCCcccceEEEE
Q 045363 314 -SGISINTFSP-RKAMYP-LTNGARAANVTA---EIYGNVGAC--------------------DYGTLSMKKVKGKIVYC 367 (712)
Q Consensus 314 -~g~~~~~~~~-~~~~~~-l~~~~~~~~~~~---~~~~~~~~c--------------------~~~~~~~~~~~gkivl~ 367 (712)
+|..+..... ....+. +........... ........| ....+...++.+++.++
T Consensus 200 apG~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (435)
T d1v6ca_ 200 GPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLV 279 (435)
T ss_dssp EECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEE
T ss_pred ecccceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeecccccccccee
Confidence 0111100000 000000 000000000000 000000000 00111123344444444
Q ss_pred ecCCc----------hhHHhhccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCC
Q 045363 368 LGSGS----------QDYTIDRLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTS 437 (712)
Q Consensus 368 ~~~~~----------~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~ 437 (712)
.+... .. .....+..+++
T Consensus 280 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------------------------------------------- 307 (435)
T d1v6ca_ 280 ERVGNQGSSYPEINSTK-ACKTAGAKGII--------------------------------------------------- 307 (435)
T ss_dssp ECCSCSSSSCTHHHHHH-HHHHTTCSEEE---------------------------------------------------
T ss_pred eccCCccccceeeeece-eecccCCcceE---------------------------------------------------
Confidence 44321 11 22222332222
Q ss_pred CCCccccccCCCCCcC--CCCcccCcEEeCCCcEEeeecCCccCCC----CCCCCCccceEeeecccchhHHHHHHHHHH
Q 045363 438 TAPFIASFSSRGPQKI--TLNILKPDIAAPGLDILAAYSELASVTG----LPGDRRIVPFNILSGTSMACPHAAAAAAYV 511 (712)
Q Consensus 438 ~~~~~a~fSs~Gp~~~--~~~~lKPDI~APG~~I~sa~~~~~~~~~----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 511 (712)
..+++.+|... .....||||.+||..|.++......... .........|..|||||||||||||++|||
T Consensus 308 -----~~~~~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl 382 (435)
T d1v6ca_ 308 -----VYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLV 382 (435)
T ss_dssp -----EECCSSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHH
T ss_pred -----EeccCCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHH
Confidence 22333333321 1356799999999888765321000000 000112356999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccCCCCeeeecCcchhhhhhcc
Q 045363 512 KSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAVHPGLIYDLNLSSYTRFLCK 575 (712)
Q Consensus 512 ~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~~~~lv~~~~~~dy~~~lc~ 575 (712)
+|+||+|+++|||++||+||+++.. +..++.||+|+||+.+|++ |+...|.
T Consensus 383 ~q~~P~~s~~~vk~~L~~TA~~~~~--~~~~~~~G~G~vn~~~A~~-----------~l~~~~~ 433 (435)
T d1v6ca_ 383 WSYHPECSASQVRAALNATADDLSV--AGRDNQTGYGMINAVAAKA-----------YLDESCT 433 (435)
T ss_dssp HHHCTTSCHHHHHHHHHHHSBCCSS--SSCBTTTBTCBCCHHHHHH-----------HHHHCTT
T ss_pred HHHCCCCCHHHHHHHHHhhCcccCC--CCCCCCcccceecHHHHHH-----------HHHhcCC
Confidence 9999999999999999999998865 3467899999999999954 7766664
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=2.5e-48 Score=403.97 Aligned_cols=267 Identities=28% Similarity=0.387 Sum_probs=227.3
Q ss_pred CCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCC
Q 045363 78 RTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157 (712)
Q Consensus 78 ~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~ 157 (712)
+.|.+..+++..+|+.+ +|+||+|+|||||||++||+|.+ +++..++| .++.
T Consensus 11 ~~w~l~~i~a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~-------------------------~~~~~~~~-~~~~- 62 (279)
T d1thma_ 11 RQYGPQKIQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAG-------------------------KVVGGWDF-VDND- 62 (279)
T ss_dssp HCCHHHHTTHHHHHTTC-CCTTCEEEEEESCCCTTCTTTTT-------------------------TEEEEEET-TTTB-
T ss_pred CCcChhhCCHHHHHhcc-CCCCcEEEEEcCCCCCCChhhcC-------------------------Ceeccccc-cccC-
Confidence 45666666777999987 99999999999999999999964 35566667 4432
Q ss_pred CCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCc
Q 045363 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVD 236 (712)
Q Consensus 158 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~d 236 (712)
..+.|..+|||||||+|++...++.. +.||||+|+|+.+|++...+ +...+++++|+++++.+++
T Consensus 63 ------~~~~d~~~HGT~vag~i~~~~~~~~~--------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~ 128 (279)
T d1thma_ 63 ------STPQNGNGHGTHCAGIAAAVTNNSTG--------IAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAK 128 (279)
T ss_dssp ------SCCCCSSSHHHHHHHHHHCCCSSSSS--------CCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCS
T ss_pred ------cccccccccccccceeeeeccCCCcc--------ccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCc
Confidence 45678899999999999998654322 38999999999999998766 7888999999999999999
Q ss_pred EEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeee
Q 045363 237 LISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGI 316 (712)
Q Consensus 237 VIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 316 (712)
|+|+|||... .......+...+.++++++|+|+||+|......+...|++|+|||++.+
T Consensus 129 i~n~S~G~~~---~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~------------------ 187 (279)
T d1thma_ 129 VISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN------------------ 187 (279)
T ss_dssp EEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT------------------
T ss_pred eeccccCccc---cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC------------------
Confidence 9999999864 3345556667888999999999999998888888888999999986532
Q ss_pred eeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcc
Q 045363 317 SINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIA 396 (712)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 396 (712)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCC
Q 045363 397 IATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSEL 476 (712)
Q Consensus 397 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 476 (712)
+.++.||++|++. ||+|||.+|+++.+.
T Consensus 188 -------------------------------------------~~~~~~S~~G~~~--------di~Apg~~i~~~~~~- 215 (279)
T d1thma_ 188 -------------------------------------------DNKSSFSTYGSWV--------DVAAPGSSIYSTYPT- 215 (279)
T ss_dssp -------------------------------------------SCBCTTCCCCTTC--------CEEEECSSEEEEETT-
T ss_pred -------------------------------------------CCCccccCCCceE--------EEeeeeeccccccCc-
Confidence 3678999999987 999999999999875
Q ss_pred ccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccC
Q 045363 477 ASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556 (712)
Q Consensus 477 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~ 556 (712)
+.|..++|||||||+|||++|||+|.+| ++.+||++|++||+++.. .+..||+|+||+.+||
T Consensus 216 ------------~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g----~~~~~G~G~vn~~~Av 277 (279)
T d1thma_ 216 ------------STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISG----TGTYWAKGRVNAYKAV 277 (279)
T ss_dssp ------------TEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTT----BTTTBSSEECCHHHHH
T ss_pred ------------ccccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCC----CCCcceeeeEcHHHhh
Confidence 3589999999999999999999999665 799999999999999875 5677999999999997
Q ss_pred C
Q 045363 557 H 557 (712)
Q Consensus 557 ~ 557 (712)
+
T Consensus 278 ~ 278 (279)
T d1thma_ 278 Q 278 (279)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=2.1e-48 Score=403.46 Aligned_cols=265 Identities=30% Similarity=0.428 Sum_probs=219.6
Q ss_pred CccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCC
Q 045363 79 TWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALD 158 (712)
Q Consensus 79 s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~ 158 (712)
.|.+-.+++..+|.++++|+||+|||||||||++||+|+ +...++| ..+.
T Consensus 5 ~wgl~~i~~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~---------------------------~~~~~~~-~~~~-- 54 (274)
T d1r0re_ 5 PYGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLN---------------------------VVGGASF-VAGE-- 54 (274)
T ss_dssp CTHHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC---------------------------EEEEEEC-STTC--
T ss_pred CcchhhcChHHHHHcCCCCCCeEEEEECCCCCCCChhhc---------------------------ccCCccc-cCCC--
Confidence 565544555699999999999999999999999999994 3345556 3321
Q ss_pred CCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCcE
Q 045363 159 PNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVDL 237 (712)
Q Consensus 159 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dV 237 (712)
..+.|..+|||||||||++..... + +.|+||+|+|+.+|+++..+ ...++++++++++.+++++|
T Consensus 55 -----~~~~d~~gHGT~vAgii~~~~~~~--------~-~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~~~~i 120 (274)
T d1r0re_ 55 -----AYNTDGNGHGTHVAGTVAALDNTT--------G-VLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDV 120 (274)
T ss_dssp -----CTTCCSSSHHHHHHHHHHCCSSSS--------B-CCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSE
T ss_pred -----CCCCCccccccccccccccccccc--------c-ccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCce
Confidence 345678899999999999875321 1 27999999999999998876 67889999999999999999
Q ss_pred EEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCC----CccccCCCceEEEceeccCceeEEEEEeCCCceE
Q 045363 238 ISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ----GTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRT 313 (712)
Q Consensus 238 IN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~ 313 (712)
+|+|||... ..........++.++++++|+||||++... ...+...+++|+|||++.+
T Consensus 121 ~n~S~~~~~---~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~--------------- 182 (274)
T d1r0re_ 121 INMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN--------------- 182 (274)
T ss_dssp EEECEEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT---------------
T ss_pred ecccccccc---chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC---------------
Confidence 999999864 233444556688899999999999998653 2345567889999886432
Q ss_pred eeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCC
Q 045363 314 SGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPT 393 (712)
Q Consensus 314 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~ 393 (712)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeee
Q 045363 394 DIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAY 473 (712)
Q Consensus 394 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 473 (712)
+.++.||++|+.. ||+|||.+|+++.
T Consensus 183 ----------------------------------------------~~~~~~s~~g~~~--------di~APG~~i~~~~ 208 (274)
T d1r0re_ 183 ----------------------------------------------SNRASFSSVGAEL--------EVMAPGAGVYSTY 208 (274)
T ss_dssp ----------------------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEE
T ss_pred ----------------------------------------------CCcccccCCCCCE--------EEEecCCCccccc
Confidence 3678899999855 9999999999997
Q ss_pred cCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCcc
Q 045363 474 SELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPT 553 (712)
Q Consensus 474 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~ 553 (712)
.. +.|..++|||||||+|||++|||+|++|+|++++||++|++||+++. ++..||+|+||+.
T Consensus 209 ~~-------------~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~-----~~~~~G~G~ln~~ 270 (274)
T d1r0re_ 209 PT-------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG-----SSFYYGKGLINVE 270 (274)
T ss_dssp TT-------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS-----CHHHHTTCBCCHH
T ss_pred CC-------------CCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC-----CCCceEcCeecHH
Confidence 64 35899999999999999999999999999999999999999999875 3677999999999
Q ss_pred ccCC
Q 045363 554 KAVH 557 (712)
Q Consensus 554 ~A~~ 557 (712)
+|++
T Consensus 271 ~A~~ 274 (274)
T d1r0re_ 271 AAAQ 274 (274)
T ss_dssp HHTC
T ss_pred HhcC
Confidence 9986
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=2.9e-48 Score=403.90 Aligned_cols=268 Identities=29% Similarity=0.411 Sum_probs=221.7
Q ss_pred CCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCC
Q 045363 78 RTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157 (712)
Q Consensus 78 ~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~ 157 (712)
-.|.+..++++.+|+++++|+||+|+|||||||++||+|+. ...++| ....
T Consensus 4 ~~~~l~~i~a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~---------------------------~~~~~~-~~~~- 54 (281)
T d1to2e_ 4 VPYGVSQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKV---------------------------AGGASM-VPSE- 54 (281)
T ss_dssp CCHHHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE---------------------------EEEEEC-CTTC-
T ss_pred CCcChHHhCcHHHHHCCCCCCCeEEEEECCCCCCCChhhhh---------------------------cCCccc-cCCC-
Confidence 35666666777999999999999999999999999999952 233344 2211
Q ss_pred CCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCc
Q 045363 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVD 236 (712)
Q Consensus 158 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~d 236 (712)
.....+..+|||||||||+|.... . ...||||+|+|+.+|++...+ ....+++++|+|++..+++
T Consensus 55 -----~~~~~~~~~HGT~vAgiiag~~~~-~--------~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~ 120 (281)
T d1to2e_ 55 -----TNPFQDNNSHGTHVAGTVAALNNS-I--------GVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMD 120 (281)
T ss_dssp -----CCTTCCSSSHHHHHHHHHHCCSSS-S--------SBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCS
T ss_pred -----CCCCcCcCCCCceeecccccCCCC-C--------CcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhcccc
Confidence 122334679999999999987532 1 127999999999999998776 6788899999999999999
Q ss_pred EEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCC----CccccCCCceEEEceeccCceeEEEEEeCCCce
Q 045363 237 LISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQ----GTVENVAPWIMTVAASSIDRKFVTAVKLGNGMR 312 (712)
Q Consensus 237 VIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 312 (712)
|+|+|||... ....+..++..+.++|+++|+||||++... ...++..+++|+||+++.+
T Consensus 121 v~n~S~g~~~---~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~-------------- 183 (281)
T d1to2e_ 121 VINMSLGGPS---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS-------------- 183 (281)
T ss_dssp EEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT--------------
T ss_pred ccccccCCCc---chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCC--------------
Confidence 9999999753 445667777788999999999999998653 3345667899999986532
Q ss_pred EeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCC
Q 045363 313 TSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAP 392 (712)
Q Consensus 313 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~ 392 (712)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEee
Q 045363 393 TDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAA 472 (712)
Q Consensus 393 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa 472 (712)
+.++.||++||.. |++|||.+|+++
T Consensus 184 -----------------------------------------------~~~~~~S~~G~~~--------d~~apG~~i~s~ 208 (281)
T d1to2e_ 184 -----------------------------------------------NQRASFSSVGPEL--------DVMAPGVSIQST 208 (281)
T ss_dssp -----------------------------------------------SCBCTTCCCSTTC--------CEEEECSSEEEE
T ss_pred -----------------------------------------------CCCCcccCCCCCc--------cccCCCCCceee
Confidence 3678899999987 999999999998
Q ss_pred ecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCc
Q 045363 473 YSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINP 552 (712)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~ 552 (712)
.+. +.|..++|||||||+|||++|||+|++|+|++++||++|++||+++.. +..||+|+||+
T Consensus 209 ~~~-------------~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~-----~~~~G~G~ld~ 270 (281)
T d1to2e_ 209 LPG-------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD-----SFYYGKGLINV 270 (281)
T ss_dssp ETT-------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSC-----HHHHTTCBCCH
T ss_pred cCC-------------CeeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC-----CCCcccCcccH
Confidence 765 358999999999999999999999999999999999999999998764 56689999999
Q ss_pred cccCCC
Q 045363 553 TKAVHP 558 (712)
Q Consensus 553 ~~A~~~ 558 (712)
.+|++.
T Consensus 271 ~~A~~~ 276 (281)
T d1to2e_ 271 QAAAQH 276 (281)
T ss_dssp HHHTSS
T ss_pred HHHHhh
Confidence 999983
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=5.3e-48 Score=399.21 Aligned_cols=265 Identities=31% Similarity=0.423 Sum_probs=223.8
Q ss_pred CCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCC
Q 045363 78 RTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157 (712)
Q Consensus 78 ~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~ 157 (712)
..|.+-.+++..+|+.+++|+||+|+||||||+ +||+|.. ...++| ..+.
T Consensus 4 ~~w~l~~i~~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~---------------------------~~~~~~-~~~~- 53 (269)
T d1gcia_ 4 VPWGISRVQAPAAHNRGLTGSGVKVAVLDTGIS-THPDLNI---------------------------RGGASF-VPGE- 53 (269)
T ss_dssp CCHHHHHTTHHHHHHTTCSCTTCEEEEEESCCC-CCTTCCE---------------------------EEEEEC-STTC-
T ss_pred CCcchhHhCcHHHHhCCCCCCCeEEEEECCCCC-CCcccCc---------------------------cccccc-cCCC-
Confidence 467666667779999999999999999999998 8999952 234445 3321
Q ss_pred CCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCCCc
Q 045363 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDGVD 236 (712)
Q Consensus 158 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~d 236 (712)
..+.|..+|||||||+|++..+. ....|+||+|+|+.+|++...+ .....+.++++++...+++
T Consensus 54 ------~~~~d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~ 118 (269)
T d1gcia_ 54 ------PSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMH 118 (269)
T ss_dssp ------CSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCS
T ss_pred ------CCccccchhhheecccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccc
Confidence 34567889999999999987633 1237999999999999998766 6778899999999999999
Q ss_pred EEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccccCCCceEEEceeccCceeEEEEEeCCCceEeee
Q 045363 237 LISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVENVAPWIMTVAASSIDRKFVTAVKLGNGMRTSGI 316 (712)
Q Consensus 237 VIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~g~ 316 (712)
+||+|||... .......+...+.++|+++|+||||+|......+...|++|+||+++.+
T Consensus 119 ~in~s~g~~~---~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------ 177 (269)
T d1gcia_ 119 VANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN------------------ 177 (269)
T ss_dssp EEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT------------------
T ss_pred cccccccccc---ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC------------------
Confidence 9999999863 2344455667889999999999999998888888889999999986532
Q ss_pred eeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCCcc
Q 045363 317 SINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTDIA 396 (712)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~ 396 (712)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeecCC
Q 045363 397 IATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYSEL 476 (712)
Q Consensus 397 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 476 (712)
+.++.||++||.. ||+|||.++.++...
T Consensus 178 -------------------------------------------~~~~~~S~~G~~~--------di~Apg~~~~~~~~~- 205 (269)
T d1gcia_ 178 -------------------------------------------NNRASFSQYGAGL--------DIVAPGVNVQSTYPG- 205 (269)
T ss_dssp -------------------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEETT-
T ss_pred -------------------------------------------CCcccccCCCCCc--------eEEEeeecceeccCC-
Confidence 3678899999976 999999999998764
Q ss_pred ccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCCcCccccC
Q 045363 477 ASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDAELASGSGQINPTKAV 556 (712)
Q Consensus 477 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~in~~~A~ 556 (712)
..|..++|||||||+|||++|||+|++|+|++++||++|++||+++.. +..||+|+||+++|+
T Consensus 206 ------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g~-----~~~~G~G~ln~~~Av 268 (269)
T d1gcia_ 206 ------------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGS-----TNLYGSGLVNAEAAT 268 (269)
T ss_dssp ------------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCSC-----HHHHTTCBCCHHHHT
T ss_pred ------------CceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC-----CCCcccCeEcHHHhc
Confidence 458999999999999999999999999999999999999999998764 566899999999998
Q ss_pred C
Q 045363 557 H 557 (712)
Q Consensus 557 ~ 557 (712)
+
T Consensus 269 k 269 (269)
T d1gcia_ 269 R 269 (269)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=3.8e-43 Score=369.88 Aligned_cols=291 Identities=27% Similarity=0.334 Sum_probs=220.3
Q ss_pred CCccccccchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCC
Q 045363 78 RTWDFLGMSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNAL 157 (712)
Q Consensus 78 ~s~~~~~~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~ 157 (712)
.+|.+-.+++..+|..+++|+||+|+|||||||++||+|.+ ++...++| .....
T Consensus 6 ~~wgl~~i~~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~-------------------------~~~~~~~~-~~~~~ 59 (309)
T d2ixta1 6 IPWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVN-------------------------NVEQCKDF-TGATT 59 (309)
T ss_dssp SCHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTT-------------------------TEEEEEES-SSSSS
T ss_pred CChhHhhcCChhhhccCCCCCCeEEEEEccCCCCCChhHhc-------------------------cccccccc-cCCCC
Confidence 36766666777999999999999999999999999999964 24455566 32211
Q ss_pred CCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHhCC--
Q 045363 158 DPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIGDG-- 234 (712)
Q Consensus 158 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g-- 234 (712)
.......|..+|||||||||+|...++. ..+.||||+|+|+.++++...+ +...+++.+++++++.+
T Consensus 60 ---~~~~~~~d~~gHGT~VAgiiaa~~~~~~-------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 129 (309)
T d2ixta1 60 ---PINNSCTDRNGHGTHVAGTALADGGSDQ-------AGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATA 129 (309)
T ss_dssp ---CEETCCCCSSSHHHHHHHHHHCBCCTTS-------CSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCccccccccccccccccccccccc-------hhhhhhhhhccceeeeeecCCCCccccccccccccccccccc
Confidence 1113455688999999999998754321 1238999999999999998766 77888999999988753
Q ss_pred ---CcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCc--cccCCCceEEEceeccCceeEEEEEeCC
Q 045363 235 ---VDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGT--VENVAPWIMTVAASSIDRKFVTAVKLGN 309 (712)
Q Consensus 235 ---~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~~~ 309 (712)
..|+|+|++... .......+...+.++|+++|+||||++..... .+...+++++|++.+..........
T Consensus 130 ~~~~~v~~~s~~~~~---~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~~~--- 203 (309)
T d2ixta1 130 TGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTYRV--- 203 (309)
T ss_dssp HTCCEEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEEEE---
T ss_pred ccccccccccccccc---cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccccccc---
Confidence 468999998763 33445556678889999999999999866543 3455688888887543211000000
Q ss_pred CceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEe
Q 045363 310 GMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAV 389 (712)
Q Consensus 310 g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~ 389 (712)
T Consensus 204 -------------------------------------------------------------------------------- 203 (309)
T d2ixta1 204 -------------------------------------------------------------------------------- 203 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcE
Q 045363 390 DAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDI 469 (712)
Q Consensus 390 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I 469 (712)
........++++|+.. ....||||+|||.+|
T Consensus 204 -----------------------------------------------~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~ 234 (309)
T d2ixta1 204 -----------------------------------------------ADYSSRGYISTAGDYV--IQEGDIEISAPGSSV 234 (309)
T ss_dssp -----------------------------------------------CTTSCCCCTTTTTSSS--CCTTCCCEEEECSSE
T ss_pred -----------------------------------------------cccccccccccccccc--cCCCcceeecCCCce
Confidence 0112344567777766 566799999999999
Q ss_pred EeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCC-----CCCCCCC
Q 045363 470 LAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTK-----SDDAELA 544 (712)
Q Consensus 470 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~-----~~~~~~~ 544 (712)
+++... ..|..++|||||||+|||++|||+|++|+|++++||++|++||++++.. ....++.
T Consensus 235 ~s~~~~-------------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~g~~~~~~~~ 301 (309)
T d2ixta1 235 YSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYA 301 (309)
T ss_dssp EEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBSTTCCSSSBTT
T ss_pred eeecCC-------------CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcCCccCCCcc
Confidence 999764 3589999999999999999999999999999999999999999988654 2236788
Q ss_pred CCCCCcCc
Q 045363 545 SGSGQINP 552 (712)
Q Consensus 545 ~G~G~in~ 552 (712)
+|+|++|+
T Consensus 302 ~g~G~~~v 309 (309)
T d2ixta1 302 SGFGFARV 309 (309)
T ss_dssp TBTCBCCC
T ss_pred cCCCEecC
Confidence 89999874
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=1.2e-42 Score=360.92 Aligned_cols=254 Identities=28% Similarity=0.355 Sum_probs=199.8
Q ss_pred cCCCccccccchhhhcc-----CCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEe
Q 045363 76 TTRTWDFLGMSEKLQKR-----SSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARY 150 (712)
Q Consensus 76 ~~~s~~~~~~~~~~~~~-----~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~ 150 (712)
++-+|.+..+.+...+. ...+|+||+|+|||||||++||+|.+. +.....
T Consensus 4 ~~~~wgl~~i~~~~~~~~~~~~~~~tG~Gv~VaViDsGid~~Hpdf~g~-------------------------~~~~~~ 58 (279)
T d2pwaa1 4 TNAPWGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGR-------------------------AQMVKT 58 (279)
T ss_dssp TTCCHHHHHHTCSSTTCCCEECCTTTTTTEEEEEEESCCCTTCGGGTTC-------------------------EEEEEE
T ss_pred CCCCCchhhhCCCCcCCCcceecCCCCCCeEEEEECcCCCCCChhhcCC-------------------------ceeccC
Confidence 34456665554333333 345999999999999999999999743 112222
Q ss_pred ccCCCCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHH
Q 045363 151 YNLDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDD 229 (712)
Q Consensus 151 ~~~~~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ 229 (712)
+ . ..+.|.++|||||||||+|+. .|+||+|+|+.+|++.... .....+..++++
T Consensus 59 ~-~----------~~~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~ 113 (279)
T d2pwaa1 59 Y-Y----------YSSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDF 113 (279)
T ss_dssp S-S----------SCSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHH
T ss_pred C-C----------CCcccccCccccccccccccc--------------cccCCCccccceeeecCCcccccccccchhhe
Confidence 2 1 234578899999999999874 6999999999999998765 677888999998
Q ss_pred HHhC-------CCcEEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCc-cccCCCceEEEceeccCcee
Q 045363 230 AIGD-------GVDLISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGT-VENVAPWIMTVAASSIDRKF 301 (712)
Q Consensus 230 a~~~-------g~dVIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVga~~~~~~~ 301 (712)
+... +++|+|+|||.. ..+.+..++.++.++|+++|+||||++..... .+...|++|+|||++.+
T Consensus 114 ~~~~~~~~~~~~~~i~n~s~g~~----~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~~--- 186 (279)
T d2pwaa1 114 VASDKNNRNCPKGVVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY--- 186 (279)
T ss_dssp HHHHGGGSCCTTEEEEEECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT---
T ss_pred ecccccccccccccceeccCCCc----cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEeec---
Confidence 8764 355999999975 34556666778889999999999999865433 45677899999986432
Q ss_pred EEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccC
Q 045363 302 VTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQ 381 (712)
Q Consensus 302 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~G 381 (712)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d2pwaa1 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCc
Q 045363 382 GAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPD 461 (712)
Q Consensus 382 a~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPD 461 (712)
+.++.||++||.. |
T Consensus 187 ----------------------------------------------------------g~~~~~S~~G~~~--------d 200 (279)
T d2pwaa1 187 ----------------------------------------------------------DRRSSFSNYGSVL--------D 200 (279)
T ss_dssp ----------------------------------------------------------SBBCTTCCBSTTC--------C
T ss_pred ----------------------------------------------------------CCCccccCCCCcc--------c
Confidence 3678999999976 9
Q ss_pred EEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCCCCCC
Q 045363 462 IAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTKSDDA 541 (712)
Q Consensus 462 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~ 541 (712)
|+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|.++++++|. |++||++..
T Consensus 201 v~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~------ 260 (279)
T d2pwaa1 201 IFGPGTDILSTWIG-------------GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD------ 260 (279)
T ss_dssp EEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC------
T ss_pred cccccccccccccC-------------CcccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC------
Confidence 99999999999875 3599999999999999999999999999999888775 677887643
Q ss_pred CCCCCCCCcCc
Q 045363 542 ELASGSGQINP 552 (712)
Q Consensus 542 ~~~~G~G~in~ 552 (712)
...+|+|++|+
T Consensus 261 ~~~~g~g~~n~ 271 (279)
T d2pwaa1 261 LSNIPFGTVNL 271 (279)
T ss_dssp CBSCCTTSCCE
T ss_pred CCCCCCCChhh
Confidence 34589999986
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=9.5e-42 Score=360.55 Aligned_cols=301 Identities=25% Similarity=0.313 Sum_probs=225.5
Q ss_pred cccccchhhhccC-CCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCC
Q 045363 81 DFLGMSEKLQKRS-SKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDP 159 (712)
Q Consensus 81 ~~~~~~~~~~~~~-~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~ 159 (712)
++++++ .+|.. +++|+||+|||||||||++||+|.... . .+.++...+.+ ...
T Consensus 6 ~~~~~~--~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~-------------~~~~~~~~~~~-~~~---- 59 (318)
T d1wmda2 6 GIVKAD--VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------A-------------FRGKITALYAL-GRT---- 59 (318)
T ss_dssp HHTTHH--HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------T-------------TTTCEEEEEET-TTT----
T ss_pred cccCch--hHHHccCccccCeEEEEEcCCcCCCCcccccCc------c-------------cCCcEEeecCC-CCC----
Confidence 345554 78885 999999999999999999999997431 0 22345555554 322
Q ss_pred CCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC---CChHHHHHHHHHHHhCCCc
Q 045363 160 NTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG---CADMDILAAFDDAIGDGVD 236 (712)
Q Consensus 160 ~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~d 236 (712)
....|..+|||||||||+|+..+ ..||||+|+|+.+|+++..+ .....+..+++++...+++
T Consensus 60 ----~~~~d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (318)
T d1wmda2 60 ----NNANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGAR 124 (318)
T ss_dssp ----TCCCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCS
T ss_pred ----CCCCCCCCCCccceeeccccccc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCc
Confidence 35667899999999999987432 17999999999999998765 3445678899999999999
Q ss_pred EEEeccCCCCCCCccchHHHHHHHhhhcCceEEEecCCCCCCCCccc--cCCCceEEEceeccCceeEEEEEeCCCceEe
Q 045363 237 LISISIGGPSRSYFDDSISIGSFHAMKKGILTACSAGNDGPYQGTVE--NVAPWIMTVAASSIDRKFVTAVKLGNGMRTS 314 (712)
Q Consensus 237 VIN~S~G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~--~~~p~vitVga~~~~~~~~~~~~~~~g~~~~ 314 (712)
|+|+|||.............+...+.++++++|+|+||.|....... ...++++++.+.......
T Consensus 125 i~~~S~g~~~~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~------------- 191 (318)
T d1wmda2 125 IHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPS------------- 191 (318)
T ss_dssp EEEECCCBCCTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGG-------------
T ss_pred eeecccccccccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccc-------------
Confidence 99999998754445555566666778899999999999997765443 345677777664322100
Q ss_pred eeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCCCC
Q 045363 315 GISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAPTD 394 (712)
Q Consensus 315 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 394 (712)
+ . ...
T Consensus 192 -----------------~-----------------~-------------------------~~~---------------- 196 (318)
T d1wmda2 192 -----------------F-----------------G-------------------------SYA---------------- 196 (318)
T ss_dssp -----------------G-----------------C-------------------------GGG----------------
T ss_pred -----------------c-----------------c-------------------------ccc----------------
Confidence 0 0 000
Q ss_pred cccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEeeec
Q 045363 395 IAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAAYS 474 (712)
Q Consensus 395 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 474 (712)
.....+..+|++||.. ....|||++|||.+|+++..
T Consensus 197 ------------------------------------------~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~ 232 (318)
T d1wmda2 197 ------------------------------------------DNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARS 232 (318)
T ss_dssp ------------------------------------------SCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECC
T ss_pred ------------------------------------------ccccccccccccCCCc--CCCcccceeecCceEEeccc
Confidence 1223577889999987 77899999999999999877
Q ss_pred CCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhC-----CCCCHHHHHHHHHccccCCCCCCCCCCCCCCCCC
Q 045363 475 ELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFH-----PDWSPAAIKSALMTTATPMKTKSDDAELASGSGQ 549 (712)
Q Consensus 475 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~G~G~ 549 (712)
......... ......|..++|||||||+|||++|||+|++ +.|++.+||++|++||++... +.++..||||+
T Consensus 233 ~~~~~~~~~-~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~--~~~~~~~G~G~ 309 (318)
T d1wmda2 233 SLAPDSSFW-ANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL--GYPNGNQGWGR 309 (318)
T ss_dssp TTCCGGGSS-EEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS--CSSCTTTTTCB
T ss_pred cccccCccc-cCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC--CCCCCCeeece
Confidence 533222111 1123458889999999999999999999974 458899999999999998765 34677899999
Q ss_pred cCccccCC
Q 045363 550 INPTKAVH 557 (712)
Q Consensus 550 in~~~A~~ 557 (712)
||+.+||+
T Consensus 310 ld~~~Al~ 317 (318)
T d1wmda2 310 VTLDKSLN 317 (318)
T ss_dssp CCHHHHHT
T ss_pred ecHHHHhC
Confidence 99999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-39 Score=346.17 Aligned_cols=289 Identities=17% Similarity=0.176 Sum_probs=193.2
Q ss_pred CCccccc-----cchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEecc
Q 045363 78 RTWDFLG-----MSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYN 152 (712)
Q Consensus 78 ~s~~~~~-----~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~ 152 (712)
++|.+-+ ++...+|+.+++|+||+|||||||||++||+|.++.. .+.+| .
T Consensus 12 ~qw~l~~~~~~~in~~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~------------~~~~~-----------~-- 66 (334)
T d1p8ja2 12 QQWYLSGVTQRDLNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD------------PGASF-----------D-- 66 (334)
T ss_dssp GCTTTSCTTSCSCCCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC------------GGGCE-----------E--
T ss_pred hcCCCCCCcccCCCHHHHHhcCCCCCCeEEEEEccCCCCCChhHhhccc------------cCCCc-----------c--
Confidence 4565533 3456899999999999999999999999999975311 11111 1
Q ss_pred CCCCCCCCCCCCCCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHh
Q 045363 153 LDNALDPNTDQKSPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIG 232 (712)
Q Consensus 153 ~~~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~ 232 (712)
..+............|..+|||||||||+|...++... .|+||+++++.+|++.. ...+.+.++.++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~gHGT~vAgiia~~~~n~~~~--------~g~a~~a~~~~~~~~~~---~~~~~~~~~~~~~~ 135 (334)
T d1p8ja2 67 VNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCG--------VGVAYNARIGGVRMLDG---EVTDAVEARSLGLN 135 (334)
T ss_dssp TTTTBSCCCCCCCTTCTTCHHHHHHHHHHCCSSSSSSC--------CCTTTTSEEEEEECSSS---CCCHHHHHHHHTSC
T ss_pred ccCCCCccccccccccCccchhhhhhhhhhcccccccc--------ccccccccccchhhccc---cccchHHHHHHHhh
Confidence 11111112222345578999999999999987654332 79999999999998753 33556677777775
Q ss_pred -CCCcEEEeccCCCCCC-Cc--------cchHHHHHHHhhhcCceEEEecCCCCCCCCccc----cCCCceEEEceeccC
Q 045363 233 -DGVDLISISIGGPSRS-YF--------DDSISIGSFHAMKKGILTACSAGNDGPYQGTVE----NVAPWIMTVAASSID 298 (712)
Q Consensus 233 -~g~dVIN~S~G~~~~~-~~--------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~----~~~p~vitVga~~~~ 298 (712)
.+++++|+|||..... .. ...+..+...+..+|+++|+||||++....... ...+.+++|++.+..
T Consensus 136 ~~~~~~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (334)
T d1p8ja2 136 PNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF 215 (334)
T ss_dssp TTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT
T ss_pred hcCCcEEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccccC
Confidence 6899999999976311 11 111223334556789999999999875543222 123445555544322
Q ss_pred ceeEEEEEeCCCceEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhh
Q 045363 299 RKFVTAVKLGNGMRTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTID 378 (712)
Q Consensus 299 ~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~ 378 (712)
T Consensus 216 -------------------------------------------------------------------------------- 215 (334)
T d1p8ja2 216 -------------------------------------------------------------------------------- 215 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCceEEEEEecCCCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcc
Q 045363 379 RLQGAGTIVAVDAPTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNIL 458 (712)
Q Consensus 379 ~~Ga~g~i~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~l 458 (712)
+..+.||++|+..
T Consensus 216 -------------------------------------------------------------g~~~~~s~~~~~~------ 228 (334)
T d1p8ja2 216 -------------------------------------------------------------GNVPWYSEACSST------ 228 (334)
T ss_dssp -------------------------------------------------------------SCCCTTCCBCTTC------
T ss_pred -------------------------------------------------------------CceeeecccCCcc------
Confidence 2445566666544
Q ss_pred cCcEEeCCCcEEeeecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCC-
Q 045363 459 KPDIAAPGLDILAAYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTK- 537 (712)
Q Consensus 459 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~- 537 (712)
..+..+||.......... ......|..++|||||||+|||++|||+|++|+|++.|||++|++||++....
T Consensus 229 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~ 300 (334)
T d1p8ja2 229 LATTYSSGNQNEKQIVTT--------DLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNA 300 (334)
T ss_dssp CEEEECCCSTTSCCEEEE--------ETTTEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCC
T ss_pred cccccccccccccccccc--------ccCCccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCC
Confidence 113334433211110000 11124688999999999999999999999999999999999999999987543
Q ss_pred C--------CCCCCCCCCCCcCccccCC
Q 045363 538 S--------DDAELASGSGQINPTKAVH 557 (712)
Q Consensus 538 ~--------~~~~~~~G~G~in~~~A~~ 557 (712)
. ...+..||+|+||+++||+
T Consensus 301 ~~~~~~~~~~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 301 DDWATNGVGRKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp SCCEECTTSCEEBTTTBTCBCCHHHHHH
T ss_pred ccccccCCCcccCCCCcceEeCHHHHHH
Confidence 1 1135679999999999987
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.3e-38 Score=336.28 Aligned_cols=279 Identities=16% Similarity=0.146 Sum_probs=199.2
Q ss_pred cchhhhccCCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCC
Q 045363 85 MSEKLQKRSSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQK 164 (712)
Q Consensus 85 ~~~~~~~~~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~ 164 (712)
++...+|+.+++|+||+|+|||||||++||+|+++... .+.++| .+. .....
T Consensus 33 in~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~~-----------------------~~~~~~-~~~----~~~~~ 84 (339)
T d2id4a2 33 INVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA-----------------------EGSWDF-NDN----TNLPK 84 (339)
T ss_dssp CCCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCG-----------------------GGCEET-TTT----BSCCC
T ss_pred cCHHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCccc-----------------------cccccc-ccC----CCccC
Confidence 45569999999999999999999999999999764210 012233 221 11123
Q ss_pred CCCCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHHhCCCcEEEeccCC
Q 045363 165 SPVDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAIGDGVDLISISIGG 244 (712)
Q Consensus 165 ~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S~G~ 244 (712)
...+..+||||||++|+|....+.. +.||||+|+|+.+++... .....++..++.+++.. .+|+|+|||.
T Consensus 85 ~~~~~~~HGT~vag~iaa~~~~~~~--------~~Gvap~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~s~g~ 154 (339)
T d2id4a2 85 PRLSDDYHGTRCAGEIAAKKGNNFC--------GVGVGYNAKISGIRILSG-DITTEDEAASLIYGLDV-NDIYSCSWGP 154 (339)
T ss_dssp CCSTTTTHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTT-CSEEEECEES
T ss_pred CCcccccccceeeeccccccccccc--------ccccccccccceEEEeec-cccchHHHHHHHHHHhh-CCEEeccCCC
Confidence 3456789999999999998654332 279999999999999753 36677788888877665 5899999997
Q ss_pred CCCC-C---cc----ch-HHHHHHHhhhcCceEEEecCCCCCCCCcc--cc--CCCceEEEceeccCceeEEEEEeCCCc
Q 045363 245 PSRS-Y---FD----DS-ISIGSFHAMKKGILTACSAGNDGPYQGTV--EN--VAPWIMTVAASSIDRKFVTAVKLGNGM 311 (712)
Q Consensus 245 ~~~~-~---~~----~~-~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~--~~p~vitVga~~~~~~~~~~~~~~~g~ 311 (712)
.... . .. .. ...+...+..+|+++|+||||++...... +. ..+.+++|++++
T Consensus 155 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 219 (339)
T d2id4a2 155 ADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID--------------- 219 (339)
T ss_dssp CCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC---------------
T ss_pred CCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccc---------------
Confidence 5211 1 11 11 12333455678999999999987543221 11 223444444332
Q ss_pred eEeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecC
Q 045363 312 RTSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDA 391 (712)
Q Consensus 312 ~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~ 391 (712)
T Consensus 220 -------------------------------------------------------------------------------- 219 (339)
T d2id4a2 220 -------------------------------------------------------------------------------- 219 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEe
Q 045363 392 PTDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILA 471 (712)
Q Consensus 392 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~s 471 (712)
..+..+.||++|+.. ...++..+||..+.+
T Consensus 220 ----------------------------------------------~~g~~~~~s~~~~~~----~~~~~~~~~g~~~~s 249 (339)
T d2id4a2 220 ----------------------------------------------HKDLHPPYSEGCSAV----MAVTYSSGSGEYIHS 249 (339)
T ss_dssp ----------------------------------------------TTSCCCTTCCCCTTE----EEEEECSBTTBCEEE
T ss_pred ----------------------------------------------ccccccccccccCcc----ceeeeeeccccccce
Confidence 123456667777654 334577788999887
Q ss_pred eecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccCCCCC----------CCCC
Q 045363 472 AYSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALMTTATPMKTK----------SDDA 541 (712)
Q Consensus 472 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~----------~~~~ 541 (712)
.... ...|..++|||||||||||++|||+|++|+|++.|||.+|++||.+++.. ++..
T Consensus 250 ~~~~------------~~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~~~~~~ 317 (339)
T d2id4a2 250 SDIN------------GRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKY 317 (339)
T ss_dssp ECST------------TCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEE
T ss_pred eccC------------CCccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccCCCCCc
Confidence 7543 13588999999999999999999999999999999999999999987653 1124
Q ss_pred CCCCCCCCcCccccCCC
Q 045363 542 ELASGSGQINPTKAVHP 558 (712)
Q Consensus 542 ~~~~G~G~in~~~A~~~ 558 (712)
+..||||+||+.+||+.
T Consensus 318 ~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 318 SHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp BTTTBTCBCCHHHHHHH
T ss_pred CCCccchhhCHHHHHHH
Confidence 66799999999999983
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=1.8e-30 Score=277.65 Aligned_cols=309 Identities=15% Similarity=0.145 Sum_probs=182.2
Q ss_pred hhcc--CCCCCCCcEEEEEcCCCCCCCCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCC
Q 045363 89 LQKR--SSKAQSNIIVGLLDTGIWVESPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSP 166 (712)
Q Consensus 89 ~~~~--~~~~G~gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 166 (712)
.+|+ .+++|+||+|||||||||++||+|.+. |+. + ++. .....+
T Consensus 13 ~~y~~~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~--------------------~---~~~---~~~~~~ 58 (357)
T d1t1ga_ 13 QAYQFPEGLDGQGQCIAIIALGGGYDETSLAQY--------FAS--------------------L---GVS---APQVVS 58 (357)
T ss_dssp HHTTCCTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHH--------------------T---TCC---CCCEEE
T ss_pred HHHCCCCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhh--------------------c---CCC---CCCCce
Confidence 4554 689999999999999999999999641 000 0 000 000122
Q ss_pred CCCCCChhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCCCChHHHHHHHHHHH---hCCCcEEEeccC
Q 045363 167 VDTDGHGTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGGCADMDILAAFDDAI---GDGVDLISISIG 243 (712)
Q Consensus 167 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~---~~g~dVIN~S~G 243 (712)
.+..+|+|||++++++...... .....+.||||+|+|+.+|+... ....+.++++++ +.+++|||+|||
T Consensus 59 ~~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~----~~~~~~~i~~~~~~~~~~~~Vin~S~G 130 (357)
T d1t1ga_ 59 VSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNT----DAGFLNAITTAVHDPTHKPSIVSISWG 130 (357)
T ss_dssp EESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSS----HHHHHHHHHHHHHCTTTCCSEEEECCC
T ss_pred eCCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEecccC----CCchHHHHHHHHHhhhcCCeEEecccc
Confidence 2455677777776654421100 00112379999999999999753 334555566655 468999999999
Q ss_pred CCCCCC---ccchHHHHHHHhhhcCceEEEecCCCCCCCC--------ccccCCCceEEEceeccCceeEEEEEeCCCce
Q 045363 244 GPSRSY---FDDSISIGSFHAMKKGILTACSAGNDGPYQG--------TVENVAPWIMTVAASSIDRKFVTAVKLGNGMR 312 (712)
Q Consensus 244 ~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--------~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 312 (712)
...... ....+......+..+|+++|+|+||+|.... ..+...+++++|++....... +.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~- 201 (357)
T d1t1ga_ 131 GPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASA--------GR- 201 (357)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECS--------SC-
T ss_pred cCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCCC--------Cc-
Confidence 763221 2234455666777899999999999985432 223356788888876432100 00
Q ss_pred EeeeeeecCCCCCceeeeEecccccccccccccCcCCCCCCCCCCCcccceEEEEecCCchhHHhhccCceEEEEEecCC
Q 045363 313 TSGISINTFSPRKAMYPLTNGARAANVTAEIYGNVGACDYGTLSMKKVKGKIVYCLGSGSQDYTIDRLQGAGTIVAVDAP 392 (712)
Q Consensus 313 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~Ga~g~i~~~~~~ 392 (712)
...++. .. ... .....+ .+.-...
T Consensus 202 ~~~~~~-------------~~-~~~--------------------------------------~~~~~~-~g~s~~~--- 225 (357)
T d1t1ga_ 202 IERETV-------------WN-DGP--------------------------------------DGGSTG-GGVSRIF--- 225 (357)
T ss_dssp EEEEEE-------------CB-CHH--------------------------------------HHCBCC-CEECSSS---
T ss_pred ccccee-------------cc-ccc--------------------------------------cccccc-CCccccc---
Confidence 000000 00 000 000000 0000000
Q ss_pred CCcccceeeeEEEeChhhHHHHHHHHhcCCCceEEEEEeeeeeCCCCCccccccCCCCCcCCCCcccCcEEeCCCcEEee
Q 045363 393 TDIAIATLIAGTFVVPEVGIKIDQYINSTKNPQAVIYKTRVVNTSTAPFIASFSSRGPQKITLNILKPDIAAPGLDILAA 472 (712)
Q Consensus 393 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa 472 (712)
............+++.+++. .++.|||+.+++......
T Consensus 226 ----------------------------------------~~p~~~~~~~~~~~~~~~~~--~~~~~pd~~~~~~~~~~~ 263 (357)
T d1t1ga_ 226 ----------------------------------------PLPSWQERANVPPSANPGAG--SGRGVPDVAGNADPATGY 263 (357)
T ss_dssp ----------------------------------------CCCGGGTTSCCCCCSSTTCC--CCCEECSEEEECCTTEEE
T ss_pred ----------------------------------------ccCcccccccccccccCCCC--CCceecceecccCCCCce
Confidence 00001123456677777777 899999999998765543
Q ss_pred ecCCccCCCCCCCCCccceEeeecccchhHHHHHHHHHHHhhCCC---CCHHHHHHHHHccccCCCCC------------
Q 045363 473 YSELASVTGLPGDRRIVPFNILSGTSMACPHAAAAAAYVKSFHPD---WSPAAIKSALMTTATPMKTK------------ 537 (712)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~---lsp~~ik~~L~~TA~~~~~~------------ 537 (712)
... ....|..++|||||||||||++|||+|+++. +....++++...+.+++...
T Consensus 264 ~~~-----------~~~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~~~~~~~ 332 (357)
T d1t1ga_ 264 EVV-----------IDGETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQ 332 (357)
T ss_dssp EEE-----------ETTEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSSSSCCSB
T ss_pred EEe-----------cCCceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCCCCCCCCccc
Confidence 321 0146999999999999999999999998643 33444544433333332110
Q ss_pred -CCCCCCCCCCCCcCccccCC
Q 045363 538 -SDDAELASGSGQINPTKAVH 557 (712)
Q Consensus 538 -~~~~~~~~G~G~in~~~A~~ 557 (712)
.+.++..+|||++|+.++++
T Consensus 333 a~~G~d~~tG~G~~n~~~~~~ 353 (357)
T d1t1ga_ 333 AGPGWDPCTGLGSPIGIRLLQ 353 (357)
T ss_dssp CCSSSBTTTBTCEECHHHHHH
T ss_pred CccCCCCCccCchhhHHHHHH
Confidence 22367789999999888765
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=7.5e-29 Score=266.72 Aligned_cols=165 Identities=13% Similarity=0.177 Sum_probs=115.4
Q ss_pred CCCCCCcEEEEEcCCCCCC-CCCCcCCCCCCCCCccccccccCCccccCCceeEEeEeccCCCCCCCCCCCCCCCCCCCC
Q 045363 94 SKAQSNIIVGLLDTGIWVE-SPSFNDKGFGPPPAKWKGKCVTGANFTRCNKKVIGARYYNLDNALDPNTDQKSPVDTDGH 172 (712)
Q Consensus 94 ~~~G~gv~VgVIDtGid~~-Hp~f~~~~~~~~~~~~~g~~~~~~~f~~~n~ki~g~~~~~~~~~~~~~~~~~~~~d~~gH 172 (712)
..+|+||+|||||+|.++. |+||.. |... .++..++ .... ....+..+|
T Consensus 21 ~~tG~gvtVaIid~G~~~~~~~Dl~~---------f~~~----~~~~~~~-----~~~~------------~~~~~~~~~ 70 (369)
T d1ga6a_ 21 APTAANTTVGIITIGGVSQTLQDLQQ---------FTSA----NGLASVN-----TQTI------------QTGSSNGDY 70 (369)
T ss_dssp SCCEEEEEEEEEEESBCHHHHHHHHH---------HHHH----TTCCCCC-----EEEE------------ECSCTTSCC
T ss_pred CCCCCCcEEEEEecCCcccCHHHHHH---------HHHh----cCCCCCC-----CCee------------cCCCCCCCC
Confidence 5689999999999998764 666641 0000 0000000 0000 122346789
Q ss_pred hhHHHHHhccCCCCCCcccccccceeeeecCCCeEEEEEeecCCC-CChHHHHHHHHHHHh-CCCcEEEeccCCCC----
Q 045363 173 GTHTSSTAAGETVKGASLYGIAQGTARGGVPSARIAMYKVCWSGG-CADMDILAAFDDAIG-DGVDLISISIGGPS---- 246 (712)
Q Consensus 173 GThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~-~g~dVIN~S~G~~~---- 246 (712)
|||+++++.+.... ..+.||||+|+|++++++.+.+ ....+++++|++|+. .+++|||+|||...
T Consensus 71 ~~~~~~~~e~~ld~---------~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~ 141 (369)
T d1ga6a_ 71 SDDQQGQGEWDLDS---------QSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADAN 141 (369)
T ss_dssp CBCHHHHHHHHHHH---------HHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHH
T ss_pred CCCCCcceeecccc---------ccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccccccCCC
Confidence 99999998765311 1237999999999999998876 677889999999996 57999999999762
Q ss_pred CCCccchHHHHHHHhhhcCceEEEecCCCCCCCC-------------ccccCCCceEEEceecc
Q 045363 247 RSYFDDSISIGSFHAMKKGILTACSAGNDGPYQG-------------TVENVAPWIMTVAASSI 297 (712)
Q Consensus 247 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-------------~~~~~~p~vitVga~~~ 297 (712)
.....+.+..++.++..+|++||+||||+|.... ..+...+++++|+++..
T Consensus 142 ~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~ 205 (369)
T d1ga6a_ 142 ADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 205 (369)
T ss_dssp HTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeecc
Confidence 1234455667777888999999999999985431 23345689999998653
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=97.99 E-value=8.2e-06 Score=63.28 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=45.7
Q ss_pred chHHHHHHHHHHhCCccccccceEEEecceeeeEEEEcCHHHHHHhhcCCCeEEEEeCeeeec
Q 045363 12 AVKEHHSLLTTAIGDEKLARESKIRSYGKSFNGFVARLLPHEAKRLSEEESVVSVFENTRRKL 74 (712)
Q Consensus 12 ~~~~h~~~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~l~~~~i~~l~~~p~V~~V~~~~~~~~ 74 (712)
..+.+..++++ .+.+|.++|. .||||+++|++++++.|+++|+|.+||+++.++.
T Consensus 16 ~~~~~~~~v~~-------~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a 70 (71)
T d1scjb_ 16 SSAKKKDVISQ-------KGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAHE 70 (71)
T ss_dssp SHHHHHHHHHT-------TTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEEE
T ss_pred HHHHHHHHHHH-------cCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEEc
Confidence 44555555543 3578999995 7999999999999999999999999999998764
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=97.38 E-value=0.00014 Score=56.28 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHhCCccccccceEEEec-ceeeeEEEEcCHHHHHHhhcCCC--eEEEEeCe
Q 045363 12 AVKEHHSLLTTAIGDEKLARESKIRSYG-KSFNGFVARLLPHEAKRLSEEES--VVSVFENT 70 (712)
Q Consensus 12 ~~~~h~~~~~~~~~~~~~~~~~v~~~y~-~~~ng~s~~l~~~~i~~l~~~p~--V~~V~~~~ 70 (712)
....|..++... ..++.+.|. ..|+||+++++++.++.|+++|+ |.+||+++
T Consensus 17 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 17 KIRETKDEVIAE-------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp HHHHHHHHHHHH-------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred HHHHHHHHHHhc-------CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 445555555544 345667787 79999999999999999999665 99999986
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.69 E-value=0.014 Score=47.90 Aligned_cols=92 Identities=9% Similarity=-0.013 Sum_probs=63.5
Q ss_pred CCCCceeeeecCCCceeEEEEEEEEEcCCCCee-EEEEEeCCCCcEEEEeeceEEeecCCcEEEEEEEEEecccCCCCeE
Q 045363 607 LNYPSMHFHFTNESSISAIFRRTVTNVGFAKSL-YKATVHSPKGLSVTVSPRVLTFSRSQQTRSFTVLVKGSMQSGASIL 685 (712)
Q Consensus 607 ln~ps~~~~~~~~~~~~~~~~rtv~n~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~ 685 (712)
+..|++.+.-. . ..+++.+|+|.|+...+ -++.+..|+|=+++. ....+ ++|++++++++|+.......+.|
T Consensus 6 ~t~p~~~v~pG--~--~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~--~~~~L-~pG~s~~~~~~Vt~p~~a~~G~Y 78 (103)
T d1w8oa1 6 FTIPDVALEPG--Q--QVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQG--SVEPL-MPGRQAKGQVTITVPAGTTPGRY 78 (103)
T ss_dssp EECCCEEECTT--C--EEEEEEEEECCSSSCBSSCEEEEECCTTSEEEE--EECCB-CTTCEEEEEEEEECCTTCCCEEE
T ss_pred ccCcceeeCCC--C--eEEEEEEEEeCCCCceeeeeEEEcCCCCccccC--cceee-CCCCcEEEEEEEECCCCCCCceE
Confidence 66677766543 3 89999999999987644 467778899987754 44556 79999999999998765433444
Q ss_pred EEEEEEEcCCcEEEeeEEEE
Q 045363 686 SALLEWSDTKHSVKSPILVY 705 (712)
Q Consensus 686 ~G~i~~~~~~~~v~~P~~~~ 705 (712)
.=.+..+.+.......+-+.
T Consensus 79 ~i~~~a~~~~~~~s~t~tvt 98 (103)
T d1w8oa1 79 RVGATLRTSAGNASTTFTVT 98 (103)
T ss_dssp EEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEeCCcceEEEEEEE
Confidence 44466666555444444443
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.22 E-value=0.13 Score=46.57 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=47.8
Q ss_pred CCcccceEEEEecCCc-----hhHHhhccCceEEEEEecCCCC--------------c--cc------------------
Q 045363 357 MKKVKGKIVYCLGSGS-----QDYTIDRLQGAGTIVAVDAPTD--------------I--AI------------------ 397 (712)
Q Consensus 357 ~~~~~gkivl~~~~~~-----~~~~~~~~Ga~g~i~~~~~~~~--------------~--~~------------------ 397 (712)
..+++|||+|++++.+ .. +++..||.|+|++.+.... . .+
T Consensus 58 ~~~v~GkI~l~r~G~~~~~~Kv~-~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~ 136 (193)
T d1de4c2 58 YTPVNGSIVIVRAGKITFAEKVA-NAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSR 136 (193)
T ss_dssp SSCCTTSEEEEESCSSCHHHHHH-HHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCC
T ss_pred ccccCceEEEEeCCCCCHHHHHH-HHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCccc
Confidence 3678999999999876 56 8999999999999864321 0 00
Q ss_pred ---ceeeeEEEeChhhHHHHHHHHh
Q 045363 398 ---ATLIAGTFVVPEVGIKIDQYIN 419 (712)
Q Consensus 398 ---~~~~p~~~i~~~~g~~l~~~~~ 419 (712)
--.||+.-|+..+++.|+..+.
T Consensus 137 ~~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 137 SSGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp CTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred cCCCCcCCeeeCCHHHHHHHHHHcC
Confidence 1137899999999999998764
|