Citrus Sinensis ID: 045377

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSIW
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcc
Coil and Loop (DISEMBL)
MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDkllpligqdpvishearKYSMWLIPalfgsailkpltryfqtqslilpmfASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSacektrapvskESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLsgllpnpkletsvlsiw
Flexible Loop (DISEMBL)
MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLsgllpnpkletsvlsiw
Low Complexity Region (SEG)
MvavsvlqyllqvvstvMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSIW
Disordered region (IsUnstruct)
**AVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPN***********
Disordered Region (DISOPRED)
MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSIW
Disordered Region (DISEMBL)
MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSIW
Disordered Region (DISPRO)
MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSIW
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSIW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
Q9SIA5	476	MATE efflux family protei	no	no	0.996	0.535	0.541	6e-76
Q9SIA4	476	MATE efflux family protei	no	no	0.996	0.535	0.560	1e-75
Q8RWF5	483	MATE efflux family protei	no	no	0.996	0.527	0.552	5e-75
Q8GXM8	476	MATE efflux family protei	no	no	0.996	0.535	0.529	1e-74
Q9SIA3	476	MATE efflux family protei	no	no	0.996	0.535	0.552	2e-73
Q9SIA1	477	MATE efflux family protei	no	no	0.996	0.534	0.533	1e-72
Q9LUH2	477	MATE efflux family protei	no	no	0.996	0.534	0.376	2e-45
Q9LUH3	469	MATE efflux family protei	no	no	0.996	0.543	0.368	3e-43
Q9LYT3	507	Protein TRANSPARENT TESTA	no	no	0.992	0.500	0.322	6e-37
A4IIS8	574	Multidrug and toxin extru	yes	no	0.917	0.409	0.319	7e-30

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score =  283 bits (725), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 138/255 (54%), Positives = 185/255 (72%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           M  V++ QYLL V+S ++ GH  +L LS VA+A S TNVTGFS++ G+ G LETLCGQAY
Sbjct: 38  MATVTIAQYLLPVISVMVAGHNGELQLSGVALANSFTNVTGFSIMCGLVGALETLCGQAY 97

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA Q+ K+G + Y+AI S I +C L+ +LW++++K+L  +GQDP IS  A  Y+ WLIPA
Sbjct: 98  GAKQYEKIGTYAYSAIASNIPICFLISILWLYIEKILISLGQDPEISRIAGSYAFWLIPA 157

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           LFG AI+ PL+R+  TQ L++P+  ++   L FH+  CWTLVF   LG  G A+A S+S 
Sbjct: 158 LFGQAIVIPLSRFLLTQGLVIPLLFTAVTTLLFHVLVCWTLVFLFGLGCNGPAMATSVSF 217

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           W   ++L  Y+ +SS+CEKTR  VS++ + +I QFF+  IPSA M+CL+WW  EILIL S
Sbjct: 218 WFYAVILSCYVRFSSSCEKTRGFVSRDFVSSIKQFFQYGIPSAAMICLEWWLFEILILCS 277

Query: 241 GLLPNPKLETSVLSI 255
           GLLPNPKLETSVLSI
Sbjct: 278 GLLPNPKLETSVLSI 292

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score =  283 bits (723), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 143/255 (56%), Positives = 183/255 (71%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           M AV++ QYLL V+S ++ GH  +L LS VA+ATS TNV+GFS+L G+AG LETLCGQAY
Sbjct: 38  MAAVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVSGFSILFGLAGALETLCGQAY 97

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA Q+ K+G +TY+A  S I +C L+ +LWI+++KLL  +GQDP IS  A  Y++WLIPA
Sbjct: 98  GAKQYEKIGTYTYSATASNIPICVLISVLWIYIEKLLISLGQDPDISRVAGSYALWLIPA 157

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           LF  A   PLTR+   Q L+LP+   +   L FHIP CW  V+   LGS GAA+A S+S 
Sbjct: 158 LFAHAFFIPLTRFLLAQGLVLPLLYCTLTTLLFHIPVCWAFVYAFGLGSNGAAMAISVSF 217

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           W  V++L  Y+ YSS+C+KTR  VS + +  I QFF   +PSA MVCL+WW  E+LIL S
Sbjct: 218 WFYVVILSCYVRYSSSCDKTRVFVSSDFVSCIKQFFHFGVPSAAMVCLEWWLFELLILCS 277

Query: 241 GLLPNPKLETSVLSI 255
           GLLPNPKLETSVLSI
Sbjct: 278 GLLPNPKLETSVLSI 292

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score =  280 bits (717), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 141/255 (55%), Positives = 184/255 (72%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           M  V+V QYLL V+S ++ GH S+L LS VA+ATS TNV+GFS++ G+AG LETLCGQAY
Sbjct: 41  MATVTVAQYLLPVISVMVAGHRSELQLSGVALATSFTNVSGFSVMFGLAGALETLCGQAY 100

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA Q+ K+G +T++AI+S + +  L+ +LW +MDKL   +GQDP IS  A  Y++ LIPA
Sbjct: 101 GAKQYAKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPDISKVAGSYAVCLIPA 160

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           L   A+ +PLTR+ QTQ L+LP+   +   L FHIP C  LV+   LGS GAALA  LS 
Sbjct: 161 LLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAFGLGSNGAALAIGLSY 220

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           W NV++L LY+ +SS+CEKTR  VS + +L++ QFF+  IPSA M  ++W   E LIL S
Sbjct: 221 WFNVLILALYVRFSSSCEKTRGFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFEFLILSS 280

Query: 241 GLLPNPKLETSVLSI 255
           GLLPNPKLETSVLSI
Sbjct: 281 GLLPNPKLETSVLSI 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score =  279 bits (714), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/255 (52%), Positives = 186/255 (72%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           M  V++ QYLL V+S ++ GH+ +L L+ VA+ATS TNV+GFS++ G+ G LETLCGQAY
Sbjct: 38  MATVTIAQYLLPVISVMVAGHIGELELAGVALATSFTNVSGFSIMFGLVGALETLCGQAY 97

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA Q+ K+G +TY+A+ S I +C ++ +LWI+++KLL  +GQ+P IS  A  YS+WL+PA
Sbjct: 98  GAEQYEKIGTYTYSAMASNIPICFIISILWIYIEKLLITLGQEPDISRVAGSYSLWLVPA 157

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           LF  AI  PLTR+   Q L++ +  S+   L FHI  CWTLVF L LGS GAA+A SLS 
Sbjct: 158 LFAHAIFLPLTRFLLAQGLVISLLYSAMTTLLFHIAVCWTLVFALGLGSNGAAIAISLSF 217

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           W   ++L  ++ + S+CEKTR  VS + + +I Q+F+  +PSA ++CL+WW  E+LIL S
Sbjct: 218 WFYAVILSCHVRFFSSCEKTRGFVSNDFMSSIKQYFQYGVPSAGLICLEWWLFELLILCS 277

Query: 241 GLLPNPKLETSVLSI 255
           GLLPNPKLETSVLSI
Sbjct: 278 GLLPNPKLETSVLSI 292

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score =  275 bits (703), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 141/255 (55%), Positives = 182/255 (71%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           M  V++ QYLL V+S ++ GH  +L LS VA+ATS TNV+GFS++ G+ G LETL GQAY
Sbjct: 38  MATVTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVSGFSIMFGLVGSLETLSGQAY 97

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA Q+ K+G +TY+AI S I +C L+ +LWI+M+KLL  +GQDP IS  A  Y++ LIP 
Sbjct: 98  GAKQYEKMGTYTYSAISSNIPICVLISILWIYMEKLLISLGQDPDISRVAGSYALRLIPT 157

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           LF  AI+ PLTR+   Q L+LP+   +   L FHI  CWTLV  L LGS GAALA S+S 
Sbjct: 158 LFAHAIVLPLTRFLLAQGLVLPLLYFALTTLLFHIAVCWTLVSALGLGSNGAALAISVSF 217

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           W   + L  Y+ +SS+CEKTR  VS++ L ++ QFFR  +PSA M+CL+WW  E+LIL S
Sbjct: 218 WFFAMTLSCYVRFSSSCEKTRRFVSQDFLSSVKQFFRYGVPSAAMLCLEWWLFELLILCS 277

Query: 241 GLLPNPKLETSVLSI 255
           GLL NPKLETSVLSI
Sbjct: 278 GLLQNPKLETSVLSI 292

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score =  273 bits (698), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 136/255 (53%), Positives = 180/255 (70%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           M  V+V QYLL V+S ++ GH  +L LS V +AT+  NV+GF ++ G+ G LETLCGQAY
Sbjct: 41  MATVTVSQYLLPVISVMVAGHCGELQLSGVTLATAFANVSGFGIMYGLVGALETLCGQAY 100

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA Q+ K+G +T++AI+S + +  L+ +LW +MDKL   +GQDP IS  A  Y++ LIPA
Sbjct: 101 GAKQYTKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPDISKVAGSYAVCLIPA 160

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           L   A+ +PLTR+ QTQ L+LP+   +   L FHIP C  LV+   LGS GAALA  LS 
Sbjct: 161 LLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAFGLGSNGAALAIGLSY 220

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           W NV++L LY+ +SSACEKTR  VS + +L++ QFF+  IPSA M  ++W   E+LIL S
Sbjct: 221 WFNVLILALYVRFSSACEKTRGFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFELLILSS 280

Query: 241 GLLPNPKLETSVLSI 255
           GLLPNPKLETSVLSI
Sbjct: 281 GLLPNPKLETSVLSI 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score =  182 bits (463), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/255 (37%), Positives = 153/255 (60%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           M+  +V  Y + + S +   HL QL L+   +A S   V+GF+ + G++G LETLCGQ +
Sbjct: 50  MILTNVFYYCIPITSVMFASHLGQLELAGATLANSWATVSGFAFMVGLSGSLETLCGQGF 109

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA ++R LGVH  ++ I  ++   L+ + W F + +  L+ QDP IS +A  Y  +  P 
Sbjct: 110 GAKRYRMLGVHLQSSCIVSLVFSILITIFWFFTESIFGLLRQDPSISKQAALYMKYQAPG 169

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           L     L+ + R+ QTQS+I P+   SF+ L  +I   + LV+   LG +GA +A S+S 
Sbjct: 170 LLAYGFLQNILRFCQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAPIATSISL 229

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           W+  + LG Y+M S   ++T    S ES   I     L++PSA MVCL++W+ EIL+ L+
Sbjct: 230 WIAFLSLGTYVMCSEKFKETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLA 289

Query: 241 GLLPNPKLETSVLSI 255
           G++PNP++ TS+++I
Sbjct: 290 GVMPNPEINTSLVAI 304

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 94/255 (36%), Positives = 151/255 (59%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           M+  ++  Y + + S +    L QL L+   +A S   VTGF+ ++G++G LETLCGQ +
Sbjct: 42  MIFTNLFYYCIPLTSVMFASQLGQLELAGATLANSWATVTGFAFMTGLSGALETLCGQGF 101

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA  +R LG+H  ++ I  ++   L+ +LW F + +  L+ QDP IS +A  Y  +L P 
Sbjct: 102 GAKSYRMLGIHLQSSCIVSLVFTILITILWFFTESVFLLLRQDPSISKQAALYMKYLAPG 161

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           L     L+ + R+ QTQ ++ P+   SFL L  +I   + LV    LG +GA +A S+S 
Sbjct: 162 LLAYGFLQNILRFCQTQCIVTPLVLFSFLPLVINIGTTYALVHLAGLGFIGAPIATSISL 221

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           W+  + LG Y++ S   ++T    S ES   +     L+IPSA MVCL++W+ EIL+ L+
Sbjct: 222 WIAFVSLGFYVICSDKFKETWTGFSMESFHHVVLNLTLSIPSAAMVCLEYWAFEILVFLA 281

Query: 241 GLLPNPKLETSVLSI 255
           GL+ NP++ TS+++I
Sbjct: 282 GLMRNPEITTSLVAI 296

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score =  154 bits (389), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 142/254 (55%)

Query: 2   VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYG 61
           + VSVL Y+L  V+ +  GHL  L L+  +IAT       + ++ GMA  ++T+CGQAYG
Sbjct: 63  IVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYG 122

Query: 62  AAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPAL 121
           A Q+  +G+    A++  +     +  L+ +   +L  +GQ   I+HE + ++  +IP +
Sbjct: 123 ARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQI 182

Query: 122 FGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTW 181
           +  A+  P+ R+ Q Q+++ P+   S  +   H    W +   L+ G +GAAL  S S W
Sbjct: 183 YAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWW 242

Query: 182 LNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSG 241
           L V + G+Y++ S  C++T    S  +   I  +F+L + SA+M+CL+ W  + L+++SG
Sbjct: 243 LLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISG 302

Query: 242 LLPNPKLETSVLSI 255
           LL NP +    +SI
Sbjct: 303 LLSNPTISLDAISI 316

May be involved in vacuolar transport of flavonoids.

Arabidopsis thaliana (taxid: 3702)

>sp|A4IIS8|S47A1_XENTR Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1

 Score =  130 bits (328), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 136/235 (57%)

Query: 9   YLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKL 68
           +L+ +VS++  GHL ++ L +V++A ++ N+TG ++ +G+AG  +TL  Q +G +  + +
Sbjct: 67  FLISIVSSIFCGHLGKVELDAVSLAITIINITGVAVGTGLAGACDTLISQTFGGSNLKLV 126

Query: 69  GVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILK 128
           G+     I+ L+L C     L I  + +L L  QDP +S   + Y +  +PAL  + + +
Sbjct: 127 GIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQ 186

Query: 129 PLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLG 188
            L +Y Q Q +I P   + F+   F+    + L++ L LG MG+A A ++S ++ +ILL 
Sbjct: 187 LLAKYLQNQGIIYPQVLTGFIANIFNALFNYILLYVLGLGVMGSACANTVSQFIQMILLF 246

Query: 189 LYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLL 243
           LY+++      T    S+      G F RLA+ S +M+C++WW+ EI + L+G+L
Sbjct: 247 LYIVWRRLYADTWGGWSQACFEEWGAFIRLAVASMLMLCIEWWAFEISMFLAGVL 301

Solute transporter for tetraethylammonium (TEA), cimetidine, metformin, guanidine, N-methylnicotinamide (NMN) and also the zwitterionic cephalosporin cephalexin. Responsible for the secretion of cationic drugs across the brush border membranes.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
224077218	475	predicted protein [Populus trichocarpa]	0.996	0.536	0.764	1e-104
255574294	470	TRANSPARENT TESTA 12 protein, putative [	0.996	0.542	0.756	1e-104
356567250	462	PREDICTED: MATE efflux family protein DT	0.996	0.551	0.717	1e-102
219921318	470	putative MATE transporter [Nicotiana tab	0.996	0.542	0.721	1e-101
356515374	480	PREDICTED: MATE efflux family protein DT	0.996	0.531	0.713	1e-101
357508229	479	Protein TRANSPARENT TESTA [Medicago trun	0.996	0.532	0.701	1e-100
388497886	485	unknown [Medicago truncatula]	0.996	0.525	0.701	1e-100
356499620	475	PREDICTED: MATE efflux family protein DT	0.996	0.536	0.709	1e-100
255641436	301	unknown [Glycine max]	0.996	0.847	0.705	8e-99
359488145	494	PREDICTED: MATE efflux family protein 5-	0.996	0.516	0.713	1e-93

>gi|224077218|ref|XP_002305184.1| predicted protein [Populus trichocarpa] gi|222848148|gb|EEE85695.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/255 (76%), Positives = 225/255 (88%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           MVAVSVLQYLLQVVS ++VGHL  LALSS AIATS+TNVTGFSLLSGMAGGLETL GQAY
Sbjct: 33  MVAVSVLQYLLQVVSVIIVGHLGALALSSAAIATSITNVTGFSLLSGMAGGLETLAGQAY 92

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA Q++KLG +TY+AIISLI++CP +C+LWIF+ KLLPL+GQD  IS EA KYSMWLIPA
Sbjct: 93  GAKQYQKLGTYTYSAIISLIIMCPPICVLWIFIGKLLPLLGQDTSISQEACKYSMWLIPA 152

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           LFG A+LKPLTRY QTQS+ILPM  +S  ILCFH  +CWTLV+KL+LG  GAA+A+SLST
Sbjct: 153 LFGGAVLKPLTRYLQTQSVILPMLITSSFILCFHTISCWTLVYKLQLGQKGAAIAYSLST 212

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           WLNVILLGLY+ +SSACEKTRAP+S+E+L  I +FF+L +PSAIMVCLKWWSME+LILLS
Sbjct: 213 WLNVILLGLYVKFSSACEKTRAPLSREALYGIREFFQLGVPSAIMVCLKWWSMELLILLS 272

Query: 241 GLLPNPKLETSVLSI 255
           GL  NPKLETSVLSI
Sbjct: 273 GLFKNPKLETSVLSI 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574294|ref|XP_002528061.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223532522|gb|EEF34311.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/255 (75%), Positives = 220/255 (86%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           MV VSVLQYLLQVVS +MVGHL +LALSSVAIATSLTN  GFSLLSGMAGG+ETLCGQAY
Sbjct: 39  MVVVSVLQYLLQVVSVMMVGHLGELALSSVAIATSLTNAVGFSLLSGMAGGVETLCGQAY 98

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA Q+ KLG +T++AIISL++VCP +CLLWIFMD+LLPLIGQD  IS++A KYS+WLIPA
Sbjct: 99  GAQQYHKLGTYTFSAIISLVMVCPPICLLWIFMDRLLPLIGQDSEISNQACKYSIWLIPA 158

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           LFGSAILKP+TR+ QTQS+I PM  SS  IL FH  ACWT V+KLELG  G ALAFSLS 
Sbjct: 159 LFGSAILKPVTRFLQTQSVIFPMLLSSLFILFFHTLACWTFVYKLELGYKGPALAFSLSV 218

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           WLNVILLG Y+ YSSAC KTR+P+SK +   +G+FFRL +PSA+MVCLKWWSME+L LLS
Sbjct: 219 WLNVILLGFYIKYSSACNKTRSPLSKHAFYGVGEFFRLGVPSAVMVCLKWWSMELLTLLS 278

Query: 241 GLLPNPKLETSVLSI 255
           GLLPNPKLETSVLSI
Sbjct: 279 GLLPNPKLETSVLSI 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567250|ref|XP_003551834.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/255 (71%), Positives = 216/255 (84%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           MV  SVLQYLLQVVS VMVGHL+QL+LSSVAIA SLTNV+GFS+LSGMAGGLETLCGQA+
Sbjct: 15  MVVASVLQYLLQVVSLVMVGHLNQLSLSSVAIAISLTNVSGFSVLSGMAGGLETLCGQAF 74

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA Q+ K G +TYTA+ISL L+C  + +LW FMDK+L L+GQDP IS EARKY++WLIPA
Sbjct: 75  GAGQYEKFGQYTYTAVISLSLICFPITILWTFMDKILTLLGQDPTISLEARKYAIWLIPA 134

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           LFGSAILKPLTR+FQTQSLI PM  +S + LCFH   CWTLVFKLELG +GAA++FSL  
Sbjct: 135 LFGSAILKPLTRFFQTQSLISPMILTSAIALCFHGATCWTLVFKLELGHVGAAISFSLCV 194

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           W NV+LL  ++ YSSACEKTR P SK +L+ +G FFR A+P+A+MVCLKWW+ EIL+LL+
Sbjct: 195 WFNVMLLLSFVRYSSACEKTRIPFSKNALVGVGVFFRFAVPAAVMVCLKWWACEILVLLA 254

Query: 241 GLLPNPKLETSVLSI 255
           GL PNPKLETSVLSI
Sbjct: 255 GLFPNPKLETSVLSI 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219921318|emb|CAQ51477.1| putative MATE transporter [Nicotiana tabacum]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/255 (72%), Positives = 215/255 (84%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           MVAV+V QYLLQVVS +MVGHL +LALSSVAIATSLTNVTGFSLL+G+ GG+ETLCGQAY
Sbjct: 35  MVAVTVFQYLLQVVSVMMVGHLGELALSSVAIATSLTNVTGFSLLTGLVGGMETLCGQAY 94

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA Q+ KL  +TYTAIISL LVC  +C+LW FMDKLL L GQD  IS EARKYS+W+IPA
Sbjct: 95  GAQQYHKLSTYTYTAIISLFLVCIPICVLWCFMDKLLILTGQDHSISVEARKYSLWVIPA 154

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           +FG AI KPL+RY Q QSLILPM  SSF +LCFH+P  W L+FKLELG++GAA+AFS+S+
Sbjct: 155 IFGGAISKPLSRYSQAQSLILPMLLSSFAVLCFHLPISWALIFKLELGNIGAAIAFSISS 214

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           WL V+ L  Y+  SS+CEKTRAP S E+ L I QFFRLA+PSA+MVCLKWWS E+L L+S
Sbjct: 215 WLYVLFLASYVKLSSSCEKTRAPFSMEAFLCIRQFFRLAVPSAVMVCLKWWSFEVLALVS 274

Query: 241 GLLPNPKLETSVLSI 255
           GLLPNPKLETSV+SI
Sbjct: 275 GLLPNPKLETSVMSI 289

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515374|ref|XP_003526375.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/255 (71%), Positives = 216/255 (84%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           MV  SVLQYLLQVVS VMVGHL+QL+LS+VAIATSLTNV+GFS+LSGMAGGLETL GQA+
Sbjct: 33  MVVASVLQYLLQVVSLVMVGHLNQLSLSTVAIATSLTNVSGFSVLSGMAGGLETLGGQAF 92

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA Q+ K G +TYTA+ISL L+C  + +LW FMDK+L L+GQDP IS EARKY++WLIPA
Sbjct: 93  GAGQYEKFGQYTYTAVISLSLICFPITILWTFMDKILTLLGQDPTISLEARKYAIWLIPA 152

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           LFGSAILKPLTR+FQTQSLI PM  +S + LCFH   CWTLVFKLELG +GAA++FSL  
Sbjct: 153 LFGSAILKPLTRFFQTQSLISPMILTSAIALCFHGATCWTLVFKLELGHVGAAISFSLCV 212

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           W NV+LL  ++ YSSACEKTR P SK +L+ +G FFR A+P+A+MVCLKWW+ EIL+LL+
Sbjct: 213 WFNVMLLLSFVRYSSACEKTRIPFSKNALVGVGDFFRFAVPAAVMVCLKWWACEILVLLA 272

Query: 241 GLLPNPKLETSVLSI 255
           GL PNPKLETSVLSI
Sbjct: 273 GLFPNPKLETSVLSI 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508229|ref|XP_003624403.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355499418|gb|AES80621.1| Protein TRANSPARENT TESTA [Medicago truncatula]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/255 (70%), Positives = 217/255 (85%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           MVA SVLQYLLQVVS +MVGHL+QL+LSSVAIATSLTNV+GFS+LSGMAGGLETLCGQAY
Sbjct: 32  MVATSVLQYLLQVVSVMMVGHLNQLSLSSVAIATSLTNVSGFSILSGMAGGLETLCGQAY 91

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA  + K G++TYTA+ISL +VC  + ++W FMDK+L LIGQDP IS +AR +++WLIPA
Sbjct: 92  GAGHYEKHGIYTYTAVISLTMVCAPITIIWTFMDKILILIGQDPTISLQARTFALWLIPA 151

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           LF SAILKPLTR+FQTQSLI PM  SSF++LCFH   CWTLVFKL LG +GAA++FSL T
Sbjct: 152 LFASAILKPLTRFFQTQSLIFPMIISSFIVLCFHGVMCWTLVFKLGLGHVGAAISFSLGT 211

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           WLNV++L  ++ YSS+CEKTR P S ++ L I +FF LA+PSA MVCLKWW+ E+L+LL+
Sbjct: 212 WLNVLILLSFVKYSSSCEKTRVPFSMKAFLGIREFFGLAVPSAAMVCLKWWACELLVLLA 271

Query: 241 GLLPNPKLETSVLSI 255
           GL P+PKLETSVLSI
Sbjct: 272 GLFPDPKLETSVLSI 286

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497886|gb|AFK37009.1| unknown [Medicago truncatula]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/255 (70%), Positives = 217/255 (85%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           MVA SVLQYLLQVVS +MVGHL+QL+LSSVAIATSLTNV+GFS+LSGMAGGLETLCGQAY
Sbjct: 38  MVATSVLQYLLQVVSVMMVGHLNQLSLSSVAIATSLTNVSGFSILSGMAGGLETLCGQAY 97

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA  + K G++TYTA+ISL +VC  + ++W FMDK+L LIGQDP IS +AR +++WLIPA
Sbjct: 98  GAGHYEKHGIYTYTAVISLTMVCAPITIIWTFMDKILILIGQDPTISLQARTFALWLIPA 157

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           LF SAILKPLTR+FQTQSLI PM  SSF++LCFH   CWTLVFKL LG +GAA++FSL T
Sbjct: 158 LFASAILKPLTRFFQTQSLIFPMIISSFIVLCFHGVMCWTLVFKLGLGHVGAAISFSLGT 217

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           WLNV++L  ++ YSS+CEKTR P S ++ L I +FF LA+PSA MVCLKWW+ E+L+LL+
Sbjct: 218 WLNVLILLSFVKYSSSCEKTRVPFSMKAFLGIREFFGLAVPSAAMVCLKWWACELLVLLA 277

Query: 241 GLLPNPKLETSVLSI 255
           GL P+PKLETSVLSI
Sbjct: 278 GLFPDPKLETSVLSI 292

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499620|ref|XP_003518635.1| PREDICTED: MATE efflux family protein DTX1-like isoform 1 [Glycine max] gi|356499622|ref|XP_003518636.1| PREDICTED: MATE efflux family protein DTX1-like isoform 2 [Glycine max]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/255 (70%), Positives = 215/255 (84%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           M   SVLQYLL VVS VMVGHL+QL+LSSVAIATSLTNV+GFS+LSGMAGGLETLCGQA+
Sbjct: 28  MAVSSVLQYLLPVVSLVMVGHLNQLSLSSVAIATSLTNVSGFSVLSGMAGGLETLCGQAF 87

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA Q+ K G++TYTAIISL LVC  + +LWIF DK+L L+GQDP IS E RKY++WLIPA
Sbjct: 88  GAGQYEKFGLYTYTAIISLSLVCFPITILWIFNDKILTLLGQDPTISLEVRKYAIWLIPA 147

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           LFGSAILKPLTR+FQTQSLI PM  +S + LCFH+  CWTLVFKL LG +GAA++FSL  
Sbjct: 148 LFGSAILKPLTRFFQTQSLISPMILTSAIALCFHVVTCWTLVFKLGLGHVGAAISFSLCV 207

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           W NVI+L  ++ YSSACEKTR   SK +L+ +G+FFR A+P+A+MVCLKWW+ EIL+LL+
Sbjct: 208 WFNVIMLLSFVRYSSACEKTRISFSKNALVGVGEFFRFAVPAAVMVCLKWWACEILVLLA 267

Query: 241 GLLPNPKLETSVLSI 255
           GL PNPKLETSVLSI
Sbjct: 268 GLFPNPKLETSVLSI 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641436|gb|ACU20994.1| unknown [Glycine max]

 Score =  365 bits (938), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 180/255 (70%), Positives = 214/255 (83%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           M   SVLQYLL VVS VMVGHL+QL+LSSVA ATSLTNV+GFS+LSGMAGGLETLCGQA+
Sbjct: 28  MAVSSVLQYLLPVVSLVMVGHLNQLSLSSVATATSLTNVSGFSVLSGMAGGLETLCGQAF 87

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA Q+ K G++TYTAIISL LVC  + +LWIF DK+L L+GQDP IS E RKY++WLIPA
Sbjct: 88  GAGQYEKFGLYTYTAIISLSLVCFPITILWIFNDKILTLLGQDPTISLEVRKYAIWLIPA 147

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           LFGSAILKPLTR+FQTQSLI PM  +S + LCFH+  CWTLVFKL LG +GAA++FSL  
Sbjct: 148 LFGSAILKPLTRFFQTQSLISPMILTSAIALCFHVVTCWTLVFKLGLGHVGAAISFSLCV 207

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           W NVI+L  ++ YSSACEKTR   SK +L+ +G+FFR A+P+A+MVCLKWW+ EIL+LL+
Sbjct: 208 WFNVIMLLSFVRYSSACEKTRISFSKNALVGVGEFFRFAVPAAVMVCLKWWACEILVLLA 267

Query: 241 GLLPNPKLETSVLSI 255
           GL PNPKLETSVLSI
Sbjct: 268 GLFPNPKLETSVLSI 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488145|ref|XP_002265933.2| PREDICTED: MATE efflux family protein 5-like [Vitis vinifera]

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 182/255 (71%), Positives = 217/255 (85%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           MV  +V QYLLQV S VMVGHL Q++LS+VAIAT+LTNVTGFSLLSG+AGGLETLCGQAY
Sbjct: 38  MVVATVSQYLLQVASVVMVGHLGQVSLSAVAIATALTNVTGFSLLSGLAGGLETLCGQAY 97

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA Q+ KLG++TY+A ISL  VC  +CLLWIFMDKLL LIGQDP+I+HEAR YS+WLIP 
Sbjct: 98  GAHQYGKLGIYTYSATISLAFVCLPICLLWIFMDKLLILIGQDPLIAHEARNYSIWLIPG 157

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           L+GSAILKPL RY QTQSLI PM  SS +IL  HIP CW+LVFKLELG++GAA+A S+S+
Sbjct: 158 LYGSAILKPLVRYLQTQSLIFPMLISSLIILGLHIPICWSLVFKLELGNVGAAVAISISS 217

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           WLNV+LL LY+ YSSACEKTR   SK++   +G+FF  A+P+A+MVCLKWWS E+L LLS
Sbjct: 218 WLNVVLLVLYVKYSSACEKTRMSFSKDAFFVMGEFFHFAVPAAVMVCLKWWSCELLTLLS 277

Query: 241 GLLPNPKLETSVLSI 255
           GLLPNPKLE+S+L+I
Sbjct: 278 GLLPNPKLESSILAI 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2026311	485	AT1G71140 "AT1G71140" [Arabido	0.929	0.490	0.609	1.9e-76
TAIR|locus:2037858	481	AT1G15170 "AT1G15170" [Arabido	0.929	0.494	0.592	3.1e-76
TAIR|locus:2010926	502	AT1G64820 [Arabidopsis thalian	0.929	0.474	0.579	8.4e-74
TAIR|locus:2037723	487	AT1G15150 "AT1G15150" [Arabido	0.929	0.488	0.567	6.7e-72
TAIR|locus:2037868	482	AT1G15180 "AT1G15180" [Arabido	0.929	0.493	0.567	2.3e-71
TAIR|locus:2033309	485	AT1G66780 "AT1G66780" [Arabido	0.929	0.490	0.588	3.7e-71
TAIR|locus:2037848	487	AT1G15160 "AT1G15160" [Arabido	0.929	0.488	0.554	2.6e-70
TAIR|locus:2050180	476	AT2G04050 "AT2G04050" [Arabido	0.929	0.5	0.563	2.6e-70
TAIR|locus:2050190	476	DTX1 "AT2G04040" [Arabidopsis	0.929	0.5	0.546	6.3e-69
TAIR|locus:2050185	476	AT2G04080 "AT2G04080" [Arabido	0.929	0.5	0.533	2.7e-68

TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 145/238 (60%), Positives = 180/238 (75%)

Query:    18 MVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAII 77
             MVGHL +L LSS AIA S  +VTGFS++ G+A  LETLCGQA GA Q+ KLGVHTYT I+
Sbjct:    54 MVGHLGELFLSSTAIAVSFCSVTGFSVVFGLASALETLCGQANGAKQYEKLGVHTYTGIV 113

Query:    78 SLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQ 137
             SL LVC  + LLW ++  +L LIGQD +++ EA K++ WLIPALFG A L+PL R+FQ Q
Sbjct:   114 SLFLVCIPLSLLWTYIGDILSLIGQDAMVAQEAGKFATWLIPALFGYATLQPLVRFFQAQ 173

Query:   138 SLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSAC 197
             SLILP+  SS   LC HI  CW+LVFK  LGS+GAA+A  +S WLNV +LGLYM +SS+C
Sbjct:   174 SLILPLVMSSVSSLCIHIVLCWSLVFKFGLGSLGAAIAIGVSYWLNVTVLGLYMTFSSSC 233

Query:   198 EKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSI 255
              K+RA +S      +G+FFR  IPSA M+CL+WWS E L+LLSG+LPNPKLE SVLS+
Sbjct:   234 SKSRATISMSLFEGMGEFFRFGIPSASMICLEWWSFEFLVLLSGILPNPKLEASVLSV 291

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 141/238 (59%), Positives = 182/238 (76%)

Query:    18 MVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAII 77
             MVGHL  L+L+S ++A+S  NVTGFS + G++  L+TL GQAYGA  +RKLGV TYTA+ 
Sbjct:    62 MVGHLGNLSLASASLASSFCNVTGFSFIIGLSCALDTLSGQAYGAKLYRKLGVQTYTAMF 121

Query:    78 SLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQ 137
              L LVC  + L+W  M+KLL ++GQDP I+HEA KY+ WLIP LF  A+L+PLTRYFQ Q
Sbjct:   122 CLALVCLPLSLIWFNMEKLLLILGQDPSIAHEAGKYATWLIPGLFAYAVLQPLTRYFQNQ 181

Query:   138 SLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSAC 197
             SLI P+  +S+++ C H+P CW LV+   LG++G ALA SLS WL  I LG +M YSSAC
Sbjct:   182 SLITPLLITSYVVFCIHVPLCWFLVYNSGLGNLGGALAISLSNWLYAIFLGSFMYYSSAC 241

Query:   198 EKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSI 255
              +TRAP+S E    IG+FF+ A+PSA M+CL+WWS E++ILLSGLLPNP+LETSVLS+
Sbjct:   242 SETRAPLSMEIFDGIGEFFKYALPSAAMICLEWWSYELIILLSGLLPNPQLETSVLSV 299

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2010926 AT1G64820 [Arabidopsis thaliana (taxid:3702)]

 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 138/238 (57%), Positives = 184/238 (77%)

Query:    18 MVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAII 77
             M GHL +L+LS+VAIATSLTNVTGFSL+ G AG L+TLCGQA+GA QF K+G +TY++++
Sbjct:    57 MAGHLDELSLSAVAIATSLTNVTGFSLIVGFAGALDTLCGQAFGAEQFGKIGAYTYSSML 116

Query:    78 SLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQ 137
              L++ C  + ++W FMDKLL +  QDP+IS  A +YS+WLIPALFG  +L+P+TRYFQ+Q
Sbjct:   117 CLLVFCFSISIVWFFMDKLLEIFHQDPLISQLACRYSIWLIPALFGFTLLQPMTRYFQSQ 176

Query:   138 SLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSAC 197
              + LP+F SS   LCFHIP CW LV+KL+ G +GAAL+   S WLNV LL ++M YS+  
Sbjct:   177 GITLPLFVSSLGALCFHIPFCWLLVYKLKFGIVGAALSIGFSYWLNVFLLWIFMRYSALH 236

Query:   198 EKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSI 255
              + +    +E + ++ QF  LAIPSA+M+CL+WWS EIL+L+SGLLPN KLETSV+SI
Sbjct:   237 REMKNLGLQELISSMKQFIALAIPSAMMICLEWWSFEILLLMSGLLPNSKLETSVISI 294

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA;ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 135/238 (56%), Positives = 175/238 (73%)

Query:    18 MVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAII 77
             MVGHL +L+L+S + A S  NVTGFS + G++  L+TL GQAYGA  +RKLGV  YTA+ 
Sbjct:    59 MVGHLGRLSLASASFAVSFCNVTGFSFIIGLSCALDTLSGQAYGAKLYRKLGVQAYTAMF 118

Query:    78 SLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQ 137
              L LVC  + LLW  M KL+ ++GQDP I+HEA +Y+ WLIP LF  A+L+PL RYF+ Q
Sbjct:   119 CLTLVCLPLSLLWFNMGKLIVILGQDPAIAHEAGRYAAWLIPGLFAYAVLQPLIRYFKNQ 178

Query:   138 SLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSAC 197
             SLI P+  +S ++ C H+P CW LV+K  LG +G ALA SLS WL  I LG +M YSSAC
Sbjct:   179 SLITPLLVTSSVVFCIHVPLCWLLVYKSGLGHIGGALALSLSYWLYAIFLGSFMYYSSAC 238

Query:   198 EKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSI 255
              +TRAP++ E    + +F + A+PSA M+CL+WWS E++ILLSGLLPNP+LETSVLSI
Sbjct:   239 SETRAPLTMEIFEGVREFIKYALPSAAMLCLEWWSYELIILLSGLLPNPQLETSVLSI 296

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 135/238 (56%), Positives = 177/238 (74%)

Query:    18 MVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAII 77
             MVGHL  L+L+S ++A+S  NVTGFS + G++  L+TL GQAYGA  +RK+GV TYTA+ 
Sbjct:    63 MVGHLGNLSLASASLASSFCNVTGFSFIVGLSCALDTLSGQAYGAKLYRKVGVQTYTAMF 122

Query:    78 SLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQ 137
              L LVC  + L+W+ M+ LL  +GQDP I+HEA +Y+  LIP LF  A+L+PLTRYFQ Q
Sbjct:   123 CLALVCLPLTLIWLNMETLLVFLGQDPSIAHEAGRYAACLIPGLFAYAVLQPLTRYFQNQ 182

Query:   138 SLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSAC 197
             S+I P+  +S  + C H+P CW LV+K  LG++G ALA S S  L  I+LG  M +SSAC
Sbjct:   183 SMITPLLITSCFVFCLHVPLCWLLVYKSGLGNLGGALALSFSNCLYTIILGSLMCFSSAC 242

Query:   198 EKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSI 255
              +TRAP+S E    IG+FFR A+PSA M+CL+WWS E++ILLSGLLPNP+LETSVLS+
Sbjct:   243 SETRAPLSMEIFDGIGEFFRYALPSAAMICLEWWSYELIILLSGLLPNPQLETSVLSV 300

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2033309 AT1G66780 "AT1G66780" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 140/238 (58%), Positives = 180/238 (75%)

Query:    18 MVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAII 77
             M GHL +L+LS+VAIATSLTNVTGFSL+ G+AG LETLCGQA+GA QFR +  +TY +++
Sbjct:    63 MAGHLDELSLSAVAIATSLTNVTGFSLIFGLAGALETLCGQAFGAGQFRNISAYTYGSML 122

Query:    78 SLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQ 137
              L+LVC  + LLW+FMDKLL L  QDP+IS  A +YS+WLIPALFG ++L+ +TR+FQ+Q
Sbjct:   123 CLLLVCFPISLLWVFMDKLLELFHQDPLISQLACRYSIWLIPALFGYSVLQSMTRFFQSQ 182

Query:   138 SLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSAC 197
              L+LP+F SS   L FH+P  W LV+KL  G +GAAL+   S WLNV LL  +M  S+  
Sbjct:   183 GLVLPLFLSSLGALFFHVPFSWLLVYKLRFGIVGAALSIGFSYWLNVGLLWAFMRDSALY 242

Query:   198 EKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSI 255
              K     ++E  L++ QF  LAIP+A+M CL+WWS E+LIL+SGLLPN KLETSVLSI
Sbjct:   243 RKNWNLRAQEIFLSMKQFITLAIPTAMMTCLEWWSFELLILMSGLLPNSKLETSVLSI 300

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

TAIR|locus:2037848 AT1G15160 "AT1G15160" [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 132/238 (55%), Positives = 175/238 (73%)

Query:    18 MVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAII 77
             +VGHL +L+L+S + A S  NVTGFS + G++  L+TL GQAYGA  +RKLGV  YTA+ 
Sbjct:    59 IVGHLGRLSLASASFAISFCNVTGFSFIMGLSCALDTLSGQAYGAKLYRKLGVQAYTAMF 118

Query:    78 SLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQ 137
              L LVC  + LLW  M KLL ++GQDP I+HEA +++ WLIP LF  A+L+PLTRYF+ Q
Sbjct:   119 CLTLVCLPLSLLWFNMGKLLVILGQDPSIAHEAGRFAAWLIPGLFAYAVLQPLTRYFKNQ 178

Query:   138 SLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSAC 197
             SLI P+  +S ++ C H+P CW LV+K  L  +G ALA SLS WL  I LG +M +SSAC
Sbjct:   179 SLITPLLITSCVVFCLHVPLCWLLVYKSGLDHIGGALALSLSYWLYAIFLGSFMYFSSAC 238

Query:   198 EKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSI 255
              +TRAP++ E    + +F + A+PSA M+CL+WWS E++ILLSGLLPNP+LETSVLS+
Sbjct:   239 SETRAPLTMEIFEGVREFIKYALPSAAMLCLEWWSYELIILLSGLLPNPQLETSVLSV 296

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 134/238 (56%), Positives = 170/238 (71%)

Query:    18 MVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAII 77
             + GH  +L LS VA+ATS TNV+GFS+L G+AG LETLCGQAYGA Q+ K+G +TY+A  
Sbjct:    55 VAGHNGELQLSGVALATSFTNVSGFSILFGLAGALETLCGQAYGAKQYEKIGTYTYSATA 114

Query:    78 SLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQ 137
             S I +C L+ +LWI+++KLL  +GQDP IS  A  Y++WLIPALF  A   PLTR+   Q
Sbjct:   115 SNIPICVLISVLWIYIEKLLISLGQDPDISRVAGSYALWLIPALFAHAFFIPLTRFLLAQ 174

Query:   138 SLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSAC 197
              L+LP+   +   L FHIP CW  V+   LGS GAA+A S+S W  V++L  Y+ YSS+C
Sbjct:   175 GLVLPLLYCTLTTLLFHIPVCWAFVYAFGLGSNGAAMAISVSFWFYVVILSCYVRYSSSC 234

Query:   198 EKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSI 255
             +KTR  VS + +  I QFF   +PSA MVCL+WW  E+LIL SGLLPNPKLETSVLSI
Sbjct:   235 DKTRVFVSSDFVSCIKQFFHFGVPSAAMVCLEWWLFELLILCSGLLPNPKLETSVLSI 292

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

TAIR|locus:2050190 DTX1 "AT2G04040" [Arabidopsis thaliana (taxid:3702)]

 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 130/238 (54%), Positives = 173/238 (72%)

Query:    18 MVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAII 77
             + GH  +L LS VA+A S TNVTGFS++ G+ G LETLCGQAYGA Q+ K+G + Y+AI 
Sbjct:    55 VAGHNGELQLSGVALANSFTNVTGFSIMCGLVGALETLCGQAYGAKQYEKIGTYAYSAIA 114

Query:    78 SLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQ 137
             S I +C L+ +LW++++K+L  +GQDP IS  A  Y+ WLIPALFG AI+ PL+R+  TQ
Sbjct:   115 SNIPICFLISILWLYIEKILISLGQDPEISRIAGSYAFWLIPALFGQAIVIPLSRFLLTQ 174

Query:   138 SLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSAC 197
              L++P+  ++   L FH+  CWTLVF   LG  G A+A S+S W   ++L  Y+ +SS+C
Sbjct:   175 GLVIPLLFTAVTTLLFHVLVCWTLVFLFGLGCNGPAMATSVSFWFYAVILSCYVRFSSSC 234

Query:   198 EKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSI 255
             EKTR  VS++ + +I QFF+  IPSA M+CL+WW  EILIL SGLLPNPKLETSVLSI
Sbjct:   235 EKTRGFVSRDFVSSIKQFFQYGIPSAAMICLEWWLFEILILCSGLLPNPKLETSVLSI 292

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA;IDA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015691 "cadmium ion transport" evidence=IDA

GO:0051238 "sequestering of metal ion" evidence=IDA

TAIR|locus:2050185 AT2G04080 "AT2G04080" [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 127/238 (53%), Positives = 174/238 (73%)

Query:    18 MVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAII 77
             + GH+ +L L+ VA+ATS TNV+GFS++ G+ G LETLCGQAYGA Q+ K+G +TY+A+ 
Sbjct:    55 VAGHIGELELAGVALATSFTNVSGFSIMFGLVGALETLCGQAYGAEQYEKIGTYTYSAMA 114

Query:    78 SLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQ 137
             S I +C ++ +LWI+++KLL  +GQ+P IS  A  YS+WL+PALF  AI  PLTR+   Q
Sbjct:   115 SNIPICFIISILWIYIEKLLITLGQEPDISRVAGSYSLWLVPALFAHAIFLPLTRFLLAQ 174

Query:   138 SLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSAC 197
              L++ +  S+   L FHI  CWTLVF L LGS GAA+A SLS W   ++L  ++ + S+C
Sbjct:   175 GLVISLLYSAMTTLLFHIAVCWTLVFALGLGSNGAAIAISLSFWFYAVILSCHVRFFSSC 234

Query:   198 EKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSI 255
             EKTR  VS + + +I Q+F+  +PSA ++CL+WW  E+LIL SGLLPNPKLETSVLSI
Sbjct:   235 EKTRGFVSNDFMSSIKQYFQYGVPSAGLICLEWWLFELLILCSGLLPNPKLETSVLSI 292

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	5e-86
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	7e-33
pfam01554	161	pfam01554, MatE, MatE	2e-21
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	6e-21
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	2e-19
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	1e-15
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	7e-13
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	9e-13
PRK01766	456	PRK01766, PRK01766, multidrug efflux protein; Revi	2e-10
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	1e-08
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	1e-08
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	2e-08
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	1e-07
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	2e-07
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	5e-07
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	6e-06
cd13135	429	cd13135, MATE_like_9, Uncharacterized subfamily of	1e-05
cd13144	434	cd13144, MATE_like_4, Uncharacterized subfamily of	6e-05
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	4e-04
cd13140	435	cd13140, MATE_like_1, Uncharacterized subfamily of	4e-04
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	5e-04
cd13146	433	cd13146, MATE_like_6, Uncharacterized subfamily of	6e-04
cd13141	443	cd13141, MATE_like_13, Uncharacterized subfamily o	0.001
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	0.004

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  262 bits (672), Expect = 5e-86
 Identities = 120/255 (47%), Positives = 171/255 (67%), Gaps = 1/255 (0%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           +V  S+LQY L VVS V VGHL +L L++ ++A+S  NVTGFS+L G+A  L+TLCGQA+
Sbjct: 12  LVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLASALDTLCGQAF 71

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA  ++ +GV+   A++ L+L C  + LLW+  + +L L+GQDP I+  A +Y  WLIP 
Sbjct: 72  GAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARLAGEYLRWLIPG 131

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLST 180
           LF  A+ +PL RY Q Q ++LP+   S + L  +I   + LVF L LG +GAALA S+S 
Sbjct: 132 LFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGFIGAALATSISY 191

Query: 181 WLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS 240
           WL V+LL LY+ +S   + T    S+E+    G F +LAIPSA+M+CL+WW+ EIL+LL+
Sbjct: 192 WLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLEWWAFEILVLLA 251

Query: 241 GLLPNPKLETSVLSI 255
           GLLP   +  +  SI
Sbjct: 252 GLLP-GTVALAAQSI 265

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score =  121 bits (307), Expect = 7e-33
 Identities = 66/246 (26%), Positives = 114/246 (46%), Gaps = 4/246 (1%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
            +  ++LQ LL +V T  VGHL  + L++V++ +S+  +  FS+L G+      L  QA 
Sbjct: 2   AILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSV-FMFLFSILMGLGTATTALVAQAV 60

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDK-LLPLIGQDPVISHEARKYSMWLIP 119
           GA  +++LG     +++  +L+   V L+  F    LL L+G D  ++  A+ Y   LI 
Sbjct: 61  GAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILIL 120

Query: 120 ALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKL--ELGSMGAALAFS 177
            +    +   L  + + Q         + +    +I   + L+F     LG +GAALA  
Sbjct: 121 GIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATV 180

Query: 178 LSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILI 237
           +S WL  +LL  Y+  +         + K     + +  +L +P A  V L+  S  +L 
Sbjct: 181 ISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLA 240

Query: 238 LLSGLL 243
           LL   L
Sbjct: 241 LLVARL 246

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 87.6 bits (218), Expect = 2e-21
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 2/161 (1%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           ++  ++LQ L  ++ T+ VGHL  +AL++V+IA S+ ++  F  L G++  L TL GQA 
Sbjct: 2   IILENLLQSLYSLIDTLFVGHLGAVALAAVSIANSIASLI-FMFLLGLSTALTTLVGQAL 60

Query: 61  GAAQFRKLGVHTYTAIISLILV-CPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIP 119
           GA  F++ GV     +I  +L+  P+  L+ +F + +L L  QD  +   A KY   L  
Sbjct: 61  GAGNFKRAGVALRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELASKYLRILAL 120

Query: 120 ALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWT 160
            +   ++   L+ + +      P    + + L  +IP  + 
Sbjct: 121 GIPFLSLQFVLSGFLRGAGDTKPPLYINLISLLLNIPLNYL 161

The MatE domain. Length = 161

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 90.6 bits (226), Expect = 6e-21
 Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 7/234 (2%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           ++   + Q  +  V TVM G L    L++VA+ +SL     F+   G+   +  L  QA+
Sbjct: 12  ILIAQLAQMAMGFVDTVMAGRLGADDLAAVALGSSLWFPV-FTFGMGLLLAVTPLVAQAH 70

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA   R++       +   +L+   + LL      +LPL+GQ+P ++  AR Y + L   
Sbjct: 71  GAGDRRRIRRAVRQGLWLALLLSLPLMLLLWLAPPILPLMGQEPEVAAIARGYLLALAWG 130

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKL----ELGSMGAALAF 176
           +  + + + L  +        P    + L L  +IP  + L+F       LG  GA LA 
Sbjct: 131 IPPALLFQVLRSFLDALGRTRPAMVITLLALVLNIPLNYVLIFGKFGLPALGGAGAGLAT 190

Query: 177 SLSTWLNVILLGLYMMYSSACEKTR--APVSKESLLAIGQFFRLAIPSAIMVCL 228
           ++  WL  + L  Y+       + R  A   +     + +  RL +P  + +  
Sbjct: 191 AIVYWLMFLALAFYIRRHKRFRRYRLFARFWRPDWARLKELLRLGLPIGLTIFF 244

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 86.5 bits (215), Expect = 2e-19
 Identities = 57/245 (23%), Positives = 103/245 (42%), Gaps = 5/245 (2%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           ++  ++LQ L  +V T MVGHL   AL++V +A  +  +   ++  G+  G   L  QA 
Sbjct: 26  IILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAI 84

Query: 61  GAAQFRKLGVHTYTAI-ISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIP 119
           GA   +K        + ++L+L   L  LL  F + LL L+G    +   A +Y   ++ 
Sbjct: 85  GAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILL 144

Query: 120 ALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKL--ELGSMGAALAFS 177
               + +   L+   +             L    +I   + L+F L   LG  GAALA  
Sbjct: 145 GAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATV 204

Query: 178 LSTWLNVILLGLYMMYSSACEKT-RAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEIL 236
           ++ W+  +LL +Y++         +  + K     + +  RL +P  +    +     +L
Sbjct: 205 IARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLL 264

Query: 237 ILLSG 241
            L   
Sbjct: 265 TLFVA 269

Length = 455

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 46/234 (19%), Positives = 96/234 (41%), Gaps = 7/234 (2%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           +V   + Q ++       +G LS++AL++   A  +       L  G++ G++    Q  
Sbjct: 14  LVLSMLSQTVMGFTDRAFLGRLSEVALAASGPA-GVLYFAILMLFFGLSSGVQVFVAQYN 72

Query: 61  GAAQFRKLG-VHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIP 119
           GA ++ ++G V       SL+L   L  L  +    L  L+G  P +     +Y    I 
Sbjct: 73  GAGRYSRIGRVLWQGLYFSLLLAPLLALLSALAAPLLFLLLGHSPEVQALEVEYFRIRIL 132

Query: 120 ALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVF-KL---ELGSMGAALA 175
               S +   L  +F        +  ++ +++  +I   + L+F KL    +G  GAA+A
Sbjct: 133 GAPFSLLGAALRAFFSGIGRTRVVMVANLVMVVVNIVLDYALIFGKLGFPAMGIAGAAIA 192

Query: 176 FSLSTWLNVILLGLYMMYSSACEKTRAPVS-KESLLAIGQFFRLAIPSAIMVCL 228
             ++  ++++   L +       +     + +     + +  RL +PS +   L
Sbjct: 193 TVIAEAVSLLFFLLLLFRRKNRRRFGLRRAWRFDRELLRRILRLGLPSGLQFFL 246

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 67.2 bits (165), Expect = 7e-13
 Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 8/227 (3%)

Query: 5   SVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQ 64
           ++LQ L+ +V   MVG L   A+++V +AT +  +    L   +  G   L  Q+YGA  
Sbjct: 14  NLLQTLVGLVDVFMVGRLGAEAIAAVGLATQVLWLL-LVLNMALGTGTVALVSQSYGAGD 72

Query: 65  FRKLGVHTYTAIISLILVC-PLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFG 123
           + +       +++  +L+  PL  L  +F + LL L+G DP +   A  Y   ++  +  
Sbjct: 73  YERARRALGQSLLLALLLSLPLALLGLLFAEPLLRLLGADPEVIALALTYLRIVLLGIPF 132

Query: 124 SAILKPLTRYFQTQSL-ILPMFASSFLILCFHIPACWTLVFKL----ELGSMGAALAFSL 178
             +        +       PM+    + +  +I   + L+F L     LG  GAALA  +
Sbjct: 133 FFLSLVGNAALRGAGDTKTPMYIMIIVNV-LNIVLDYVLIFGLWGFPGLGVAGAALATVI 191

Query: 179 STWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIM 225
           S  +  +LL   ++      K      +     I +  R+ +P+ + 
Sbjct: 192 SRVVGALLLLFLLLRGRLPIKISFKGFRLDRKIIKKLLRIGLPAGLE 238

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 67.0 bits (164), Expect = 9e-13
 Identities = 64/250 (25%), Positives = 104/250 (41%), Gaps = 5/250 (2%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           ++   +LQ L  +V T  +G L   AL++V +A  L      +L  G++ G   L  QA 
Sbjct: 4   LLLSMLLQTLYNLVDTFFLGRLLGDALAAVGLAFPLIA-LLIALGVGLSVGTSALISQAI 62

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIP 119
           GA    K       +I+  IL+  L+  L   F   +L L+G +  +   A  Y   LI 
Sbjct: 63  GAGDEEKARRVLVQSIVLAILLGLLLAALLLFFSPLILSLLGAEEEVIELAATYLTILIL 122

Query: 120 ALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVF---KLELGSMGAALAF 176
            L  + +   L+   Q +         S L    +I     L+F     ELG  GAALA 
Sbjct: 123 GLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNILLDPLLIFGLGPPELGIAGAALAT 182

Query: 177 SLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEIL 236
            +S  +  +LL +Y+       K +  + K  L  + +  R+ +PSAI   L    + I+
Sbjct: 183 VISYVIGALLLLIYLRKGKKILKFKLSLLKPDLELLRRLLRIGLPSAIQNSLLSLGLLII 242

Query: 237 ILLSGLLPNP 246
           + +       
Sbjct: 243 VAIVAAFGGA 252

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed

 Score = 59.8 bits (146), Expect = 2e-10
 Identities = 51/239 (21%), Positives = 101/239 (42%), Gaps = 16/239 (6%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           ++   V Q  +  V TVM G +S   L++VAI TS+  +       G+   L  +  Q  
Sbjct: 21  ILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIW-LPVILFGHGLLLALTPIVAQLN 79

Query: 61  GAAQFRKLGVHTYTAI-ISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKY---SMW 116
           GA +  ++       + ++L L   ++ +L+  +  +L ++  +P ++  A  Y    +W
Sbjct: 80  GAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLW 139

Query: 117 LIPALFGSAILKPLTRYF-QTQSLILPMFASSFLILCFHIPACWTLVF-KL---ELGSMG 171
            IPA     +L    R F        P     FL L  +IP  +  ++ K    ELG +G
Sbjct: 140 GIPAYLLYQVL----RSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVG 195

Query: 172 AALAFSLSTWLNVILLGLYMMYSS--ACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCL 228
             +A ++  W+  + + +Y+  +      +    + K     I +  +L +P  + +  
Sbjct: 196 CGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFF 254

Length = 456

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 4/192 (2%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
            +  S+L   L ++  ++       AL++  +A  + ++  F    G+A     + GQ  
Sbjct: 229 AIQNSLLSLGLLIIVAIVAAFGGAAALAAYTVAFRIASLA-FMPALGLAQAALPVVGQNL 287

Query: 61  GAAQFRKL-GVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIP 119
           GA  F +   +     +I L++   L  L+ +F + +L L   DP     A  Y   L  
Sbjct: 288 GAGNFDRARRITWVALLIGLLIGAVLGLLILLFPEPILSLFTNDPEFLELAVSYLRILAI 347

Query: 120 ALFGSAILKPLTRYFQ-TQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSL 178
                 I   L   FQ     +  +  S        +P  + L + L LG  G  LA  +
Sbjct: 348 YYLFVGIGYVLQAGFQAAGRTLKSLIVSLLSYWVVRLPLAYVLAY-LGLGLYGIWLALVI 406

Query: 179 STWLNVILLGLY 190
           S  L  ++L L+
Sbjct: 407 SLILAALVLLLF 418

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 8/226 (3%)

Query: 5   SVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQ 64
            +LQ LL  + T M+   S  A+++V +A  +  +    + S ++ G   L  Q  GA  
Sbjct: 16  LLLQMLLGTIDTFMLSRYSDNAVAAVGVANQILFL-LILIFSFISTGTSILIAQYLGAKD 74

Query: 65  FRKLGVHTYTAII-SLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFG 123
            +K       A++ +L+L      LL  F  +LL L+G  P +      Y   +  +LF 
Sbjct: 75  KKKARQIAGVALLFNLLLGLVFSLLLLFFGAELLRLMGLPPELLALGSTYLRIVGGSLFL 134

Query: 124 SAILKPLTRYFQTQSL-ILPMFASSFLILCFHIPACWTLVFKL----ELGSMGAALAFSL 178
            A+   L+   ++     +PM+ S  + +  +I   + L+F      +LG  G A++  +
Sbjct: 135 QALSLTLSAILRSHGRTKIPMYVSLIMNI-LNIVGNYLLIFGWFGLPKLGVAGVAISTVI 193

Query: 179 STWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAI 224
           S  + ++LL + +            +       + +  ++ +PSA 
Sbjct: 194 SRAVGLVLLFILLFRKLKIRFRLKDLRPFPKKLLKKILKIGLPSAG 239

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 4/189 (2%)

Query: 5   SVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQ 64
           S+ + L  ++ T+ V  L  +AL++  IA  + +   F    G+A  +  L GQ  GA  
Sbjct: 254 SLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLGAGN 312

Query: 65  FRKLG-VHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFG 123
           +++          +SL++   +  LL +F + ++ L   DP +   A    +        
Sbjct: 313 YKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPF 372

Query: 124 SAILKPLTRYFQ-TQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWL 182
             I   L+   +      +P   S      F +P  + L F   LG  G  + F LS  L
Sbjct: 373 DGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLIL 431

Query: 183 NVILLGLYM 191
             ILL L +
Sbjct: 432 RAILLLLRL 440

Length = 455

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 57/231 (24%), Positives = 100/231 (43%), Gaps = 11/231 (4%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHL-SQLALSSVAIATSLTN-VTGFSLLSGMAGGLETLCGQ 58
            +   ++  L  +V  + VGH    LAL++V +   +   +    L+ G+ G   +L  +
Sbjct: 13  AIIGMLVNGLYNIVDGIFVGHGVGALALAAVNLVFPIIMLLMALGLMIGVGGA--SLISR 70

Query: 59  AYGAAQFRKLGVHTYTAIISLILVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWL 117
             GA    K      TA++  +++  L+ +L  +F+D LL L+G    +   A  Y   +
Sbjct: 71  RLGAGDREKANRIFSTALLLSLILGLLLTILGLLFLDPLLRLLGASGELLPYAVDYLRII 130

Query: 118 I---PALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAAL 174
           +   P    S++L  L R      L +       ++   +I      +F L LG  GAAL
Sbjct: 131 LLGAPFTILSSVLNNLLRAEGKPKLAMLGMLIGAVL---NIILDPLFIFVLGLGIAGAAL 187

Query: 175 AFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIM 225
           A  ++  ++++LL LY     +  K      K SL  I +   L  PS +M
Sbjct: 188 ATVIAQLISLLLLLLYFFRGKSLLKLSLLRFKLSLKIIKEILALGFPSFLM 238

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 42/180 (23%), Positives = 66/180 (36%), Gaps = 3/180 (1%)

Query: 16  TVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQF-RKLGVHTYT 74
             +V     +A ++  IA  + +   F   S +   + T   Q  GA +  R        
Sbjct: 249 NSIVNSYGVVASAAYGIANKINSFA-FLPPSAIGQAVSTFVAQNIGAGKIERAKKGLRTG 307

Query: 75  AIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYF 134
            IISLI+   ++ L++ F  +LL L   DP +     +Y            IL      F
Sbjct: 308 IIISLIIGLIIILLVFFFAPQLLGLFTSDPEVIEIGAEYLRIYSIDYILFGILFVFNGLF 367

Query: 135 Q-TQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMY 193
           +       PM  S   +    IP  + L     LG  G  LA  +S  L+ I+  +Y   
Sbjct: 368 RGLGKTKFPMIISILRLWLVRIPLAYLLSRLTGLGLFGIWLAMPISNILSAIICIIYYRK 427

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 33/242 (13%)

Query: 1   MVAVSVLQYLLQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQA 59
           ++  ++LQ L  +V  ++VG  L   AL++V+  + +  +   ++  G++ G   L  Q 
Sbjct: 12  LLLSNLLQQLYNLVDLLIVGQFLGVAALAAVSNGSPIIFLL-TAIGMGLSMGGTILISQY 70

Query: 60  YGAAQFRKLGVHTYTAIISLILVCPLVC--LLWIFMDKLLPLIGQDPVISHEARKY---S 114
            GA    K        ++ L L+  +V   L  +F   +L L+     I   A  Y    
Sbjct: 71  IGAKDEEKAK-KAVGTLLVLFLILGIVLTILGLLFAPPILRLMNTPAEILELAVSYLRIC 129

Query: 115 MWLIPALFG----SAILK-------PLTRYFQTQSLILPMFASSFLILCFHIPACWTLVF 163
              IP +FG    SAIL+       PL  YF   + +L +      I  FH         
Sbjct: 130 FLGIPFIFGYNAYSAILRGLGDSKTPL--YFVIIACVLNIILDLLFIAVFH--------- 178

Query: 164 KLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSA 223
              +G  GAALA  ++  ++V+L   Y+       K      +     + +  ++ +PSA
Sbjct: 179 ---MGVAGAALATVIAQAISVLLALYYLRKKKLPFKLSLKDFRFDKEILKEILKIGLPSA 235

Query: 224 IM 225
           + 
Sbjct: 236 LQ 237

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 46.4 bits (111), Expect = 6e-06
 Identities = 43/181 (23%), Positives = 67/181 (37%), Gaps = 9/181 (4%)

Query: 5   SVLQYLLQVVSTVMVGHLSQLALSSVAIAT---SLTNVTGFSLLSGMAGGLETLCGQAYG 61
            +L+ L  +V   +V      AL++  I     SL  + GF     MA    TL GQ  G
Sbjct: 239 QLLRSLGFLVLLAIVASYGTAALAAYQIGLRIESLAFMPGFGF--SMAAS--TLVGQNLG 294

Query: 62  AAQFRKL-GVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           A    +          + ++ +  L  LL+IF   L  L   DP +      Y   +  +
Sbjct: 295 AGDPDEARRYGKRALRLGVLFMGLLGLLLFIFAPPLASLFTPDPEVIELGVLYLRIVALS 354

Query: 121 LFGSAILKPLTRYFQ-TQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLS 179
               AI   L+   +       P+  +   +    +P  + L F L LG  G  LA  + 
Sbjct: 355 QPFLAISFVLSGALRGAGDTRPPLIINLISMWLVRLPLAYLLGFVLGLGLTGIWLAMFVD 414

Query: 180 T 180
           T
Sbjct: 415 T 415

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 42/193 (21%), Positives = 83/193 (43%), Gaps = 6/193 (3%)

Query: 5   SVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQ 64
           +++  L  +V    +G +S    S+V   T+  N T    L  ++ G   L  Q+ GA  
Sbjct: 14  NLVSQLQMLVDRAFLGRISIRYYSAVGNVTTPFN-TITGFLGSISIGFTILGSQSVGAKD 72

Query: 65  FRKLGVHTYTAIISLILVCPLVCLLWIFMDKLL-PLIGQDPVISHEARKYSMWLIPALFG 123
            +++  +  ++I+   ++  ++ LLW+F  +++  L G D  I   +  Y       L  
Sbjct: 73  IKRINDYAISSIVYNSIIGVILFLLWLFGARIIFVLFGVDGQILGYSINYVRIFSIYLLL 132

Query: 124 SAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVF-KL---ELGSMGAALAFSLS 179
             IL   +   Q      P+     +    ++   + L+F       LG +GAA+A +++
Sbjct: 133 LGILFTFSSILQGIGETKPIMYGGIIKNLLNVILDYVLIFGNFGFPRLGIIGAAIATTIA 192

Query: 180 TWLNVILLGLYMM 192
             LN+I+L     
Sbjct: 193 NVLNLIILVYLCR 205

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 429

>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 52/238 (21%), Positives = 88/238 (36%), Gaps = 26/238 (10%)

Query: 6   VLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQF 65
           + Q L  +V ++ V  L + AL++V++A  + N+   ++  G   G+  L  ++ G    
Sbjct: 22  LFQALYNIVDSIFVARLGENALTAVSLAFPIQNLM-IAVAVGTGVGVNALLSRSLGEKDQ 80

Query: 66  RKLGVHTYTAIISLILVCPLVCLLWIFMDK-LLPLIGQDPVISHEARKYSMWLIPALFGS 124
           ++        ++  +L   L  LL +F  K    L   DP I      Y  W +   FG 
Sbjct: 81  KEANKAANNGLLLALLSYLLFLLLGLFGVKPFFRLFTDDPEILEYGYAYLSWCVIFSFGM 140

Query: 125 AILKPLTRYFQTQS-LILPMFASSF---------LILCFHIPACWTLVFKLELGSMGAAL 174
                  +  Q+    I PM A             IL F       L     +G  GAA+
Sbjct: 141 FFQILCEKVLQSTGNTITPMIAQLIGAIINIILDPILIF------GLFGFPAMGIAGAAI 194

Query: 175 AFSLSTWLNVILLGLYMMYSSACEKTRAPVS----KESLLAIGQFFRLAIPSAIMVCL 228
           A    T +  IL      +    +           + SL  I + + + +PS IM  +
Sbjct: 195 A----TVIGQILAMFLAFFFLLRKNKDVQPDLRLFRPSLRIIKEIYAVGLPSIIMQAI 248

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 434

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 38/180 (21%), Positives = 67/180 (37%), Gaps = 17/180 (9%)

Query: 12  QVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVH 71
           Q V T  +  L   AL++   A++++    F     +    + + G   GA  F +    
Sbjct: 248 QTVITAFIARLGTAALAARTYASNISMFV-FLFSLAIGQATQIIVGHLVGAGDFDEAYKR 306

Query: 72  TYTAI-ISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKP- 129
              ++ I L++   +  LL +F + +L L   DP I              L  S +L+P 
Sbjct: 307 VLKSLKIGLLVSLAVALLLALFREPILGLFTDDPEIIA-------LGKTLLLISILLEPG 359

Query: 130 -LTRYFQTQSL------ILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWL 182
                    SL        P+      +    +P  + L   L LG +G  +AF+   W+
Sbjct: 360 RAFNIVLIGSLRAAGDARFPVLIGIISMWGISVPLAYLLGIVLGLGLLGVWIAFAADEWV 419

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 51/245 (20%), Positives = 85/245 (34%), Gaps = 29/245 (11%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVT-GFSLLSGMAGGLETLCGQA 59
           ++  S +Q    +     VG L   A+++V  A     +    +LLS +  G +    Q+
Sbjct: 14  IMGTSFIQMAYNLTDMFWVGRLGSDAVAAVGTAGFFVWLAYALALLSKI--GAQVKVSQS 71

Query: 60  YGAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIG----QDPVISHEARKYSM 115
            GA   ++   +   A+   +L+  L  LL +   K  PLIG     D  +   A  Y  
Sbjct: 72  IGAKDEKEARKYARNALQLNLLLGILYGLLLLLFAK--PLIGFFNLGDAEVISLAITYLR 129

Query: 116 WLIPALFGSAILKPLTRYFQTQ------------SLILPMFASSFLILCFHIPACWTLVF 163
            +   L  S +    T  F                L+L +     LI  F          
Sbjct: 130 IVALGLIFSFLNPVFTGIFNALGDSKTPFIINAIGLVLNIILDPLLIFGFGPFP------ 183

Query: 164 KLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSA 223
              LG  GAALA  L+  +  +L    +            + +     I +  +L +P A
Sbjct: 184 --ALGVAGAALATVLAQAIVFLLFLYALKKKKGLFLKIRILKRPDRKYIKEILKLGLPVA 241

Query: 224 IMVCL 228
           +   L
Sbjct: 242 LQSIL 246

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 435

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 6/183 (3%)

Query: 13  VVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQF-RKLGVH 71
           V++  ++G+   + +++  I T +     F  L G++ GL+ + G  YGA  + R     
Sbjct: 248 VLNLTLLGYGGDIGVAAFGIVTRILTFL-FLPLIGLSQGLQPIIGYNYGAGNYDRVKQAL 306

Query: 72  TYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLT 131
               I++LI    L  +L +F ++++ L   DP +   A +     + A   + I   L+
Sbjct: 307 KLALIVALIYGLVLFLILLLFPEQIVSLFTDDPELIALAARILRIFLLAFPLAGINIVLS 366

Query: 132 RYFQ-TQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLY 190
            YFQ           S      F IP    L+     G  G  LAF L+  L  +LL L 
Sbjct: 367 GYFQAIGKAKRAALLSLLRQGLFLIPL--LLILPRLFGLDGIWLAFPLAEIL-TLLLALI 423

Query: 191 MMY 193
           ++ 
Sbjct: 424 LLK 426

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 44/200 (22%), Positives = 90/200 (45%), Gaps = 9/200 (4%)

Query: 42  FSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAII-SLILVCPLVCLLWIFMDKLLPLI 100
            +L +G+  G+ +L  +A GA + ++L     + +  +L+    +V L +IF + LL L+
Sbjct: 60  LALGNGIQVGVSSLLARAIGAQRAKELDQAADSGLALALLAATVIVVLGYIFAEPLLQLL 119

Query: 101 GQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWT 160
           G   ++   A +Y  + +P +    ++  L    Q +     M  +  +    +I     
Sbjct: 120 GAKGLLLEYALEYFYYSLPGVPFIMLIGVLMGVLQGEGRTKYMMMAMLIGTVVNIVLDPI 179

Query: 161 LVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPV----SKESLLAIGQFF 216
           L+F  ++G  GAALA  L+  +++    LY++Y     K+   +    S  S   I +  
Sbjct: 180 LIFVFDMGVKGAALATVLAQAISL----LYLLYVFLIGKSNVTIHIKLSNISSSVIVEIL 235

Query: 217 RLAIPSAIMVCLKWWSMEIL 236
           R+ +P  ++  +   S  I 
Sbjct: 236 RVGLPQMLLQLISSISFLIY 255

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 433

>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 51/205 (24%), Positives = 79/205 (38%), Gaps = 26/205 (12%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           +    ++Q L  +V    VG L   AL+ V++A ++      +L   +  G   L   A 
Sbjct: 20  IAIGMIIQTLYFLVDLYFVGQLGDAALAGVSLAGNVMFFV-MALTQVLNVGTAALVSHAV 78

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLL--WIFMDKLLPLIGQDPVISHEARKYSMWLI 118
           G     +     +   + L  V  LV L+  ++F    L  +  D      A  Y  W I
Sbjct: 79  GRKDQGEAN-AVFNQSLLLAAVLGLVVLVLGYLFGRLYLETLAADAATVEAATTYLYWFI 137

Query: 119 P-------------ALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKL 165
           P             AL G+ I+KP     Q  +++L +  +  LI        W      
Sbjct: 138 PSLALQFILTVLGAALRGTGIVKPFM-VIQILAVLLNIILAPILI------TGWGTGR-- 188

Query: 166 ELGSMGAALAFSLSTWLNVILLGLY 190
            LG  GA LA S+S  + V+LL  Y
Sbjct: 189 ALGVAGAGLASSISVAIAVVLLLYY 213

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 443

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 5/171 (2%)

Query: 12  QVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVH 71
             V T +V     + +++  I   + ++  F    G+A    T+ GQ  GA Q  +    
Sbjct: 257 FTVMTALVAGFGTVVVAAYGIGNRIISLV-FLPAFGLARATSTMVGQNLGAGQIDRAEEI 315

Query: 72  TYTA--IISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKP 129
              A  +I LILV     L ++F + ++ +   DP +  E   +   + P+     + + 
Sbjct: 316 VKKAALLIFLILVI-GGVLAFLFAEPIVRVFINDPEVIKEGADFLRIVAPSFPFFGLFQV 374

Query: 130 LTRYFQ-TQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLS 179
           +   F+ +   +  M  S   +    IP  + L + L LG  G  +A ++S
Sbjct: 375 INGAFRGSGHTLTAMIISILRLWVIRIPLAYLLAYVLGLGVTGIWIAMAIS 425

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	100.0
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	100.0
PRK00187	464	multidrug efflux protein NorA; Provisional	100.0
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	100.0
PRK10189	478	MATE family multidrug exporter; Provisional	100.0
PRK01766	456	multidrug efflux protein; Reviewed	100.0
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.98
PRK00187	464	multidrug efflux protein NorA; Provisional	99.93
PRK10189	478	MATE family multidrug exporter; Provisional	99.92
PRK01766	456	multidrug efflux protein; Reviewed	99.92
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.92
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.91
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.91
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.9
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.89
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.89
PRK15099	416	O-antigen translocase; Provisional	99.87
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.86
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.85
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.85
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.81
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.8
PRK10459	492	colanic acid exporter; Provisional	99.77
PRK15099	416	O-antigen translocase; Provisional	99.76
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.74
COG2244	480	RfbX Membrane protein involved in the export of O-	99.71
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.58
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	99.57
PRK10459	492	colanic acid exporter; Provisional	99.51
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	99.42
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.37
COG2244	480	RfbX Membrane protein involved in the export of O-	99.27
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	99.08
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.04
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	98.78
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	98.73
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	98.35
COG4267	467	Predicted membrane protein [Function unknown]	92.34
COG4267	467	Predicted membrane protein [Function unknown]	84.13

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=100.00  E-value=1.6e-36  Score=261.56  Aligned_cols=253  Identities=22%  Similarity=0.295  Sum_probs=234.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377            1 MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI   80 (256)
Q Consensus         1 i~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (256)
                      ++++++.+.+++.+|+.++||+|++++|+.+.++++...+ ..+..+++.+.++.++|++|+||++++++..+++.....
T Consensus        26 ~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~  104 (455)
T COG0534          26 IILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLAL  104 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999998 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377           81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW  159 (256)
Q Consensus        81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~  159 (256)
                      .++++..++ +.+.++++.+++.++|+.+.+.+|+++..++.|+..++.+..+.+|+.||++.+++.++.++++|+++|+
T Consensus       105 ~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~  184 (455)
T COG0534         105 LLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNY  184 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhH
Confidence            999887776 9999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh-cc-cccchHHHHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045377          160 TLVFK-LE-LGSMGAALAFSLSTWLNVILLGLYMMYSSA-CEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEIL  236 (256)
Q Consensus       160 ~li~~-~~-~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  236 (256)
                      +|+++ .+ +|+.|+++||.+++.+.++...++++|+++ ......+..+.+++..|+++++++|.+++...+...+...
T Consensus       185 llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~  264 (455)
T COG0534         185 LLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLL  264 (455)
T ss_pred             HHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            99998 46 999999999999999999999999888764 2222233334556889999999999999999999999999


Q ss_pred             HHHHhcCCChhhhhhhhc
Q 045377          237 ILLSGLLPNPKLETSVLS  254 (256)
Q Consensus       237 ~~~~~~~g~~~~a~~~~~  254 (256)
                      +.+.+++|++.+|++.++
T Consensus       265 ~~~~~~~G~~~lAa~~i~  282 (455)
T COG0534         265 TLFVARLGTVALAAYGIA  282 (455)
T ss_pred             HHHHHhcChHHHHHHHHH
Confidence            999999999999987653

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=100.00  E-value=8.1e-34  Score=244.56  Aligned_cols=251  Identities=18%  Similarity=0.154  Sum_probs=225.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHL-SQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI   80 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~-g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (256)
                      +++++.+.+++.+|+.++||+ |++++|+.+++.++.++. ..+..+++.+.++.+||++|+||+|++++..+++..+..
T Consensus        19 ~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~   97 (441)
T PRK10367         19 IFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQALARALVQPLLLAL   97 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            678999999999999999998 678999999999999997 899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377           81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW  159 (256)
Q Consensus        81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~  159 (256)
                      +.+++..+. ..+.+++..+++.|+|+.+.+.+|+++..++.|+..+..+..+.+|+.||++.+++.++++.++|+++++
T Consensus        98 ~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~  177 (441)
T PRK10367         98 GAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVGNILNIVLDL  177 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHH
Confidence            999888876 7888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhccccccc-CCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 045377          160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKT-RAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILIL  238 (256)
Q Consensus       160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  238 (256)
                      ++++.+++|+.|+++|+.+++.+.+++..++++++++.++. .+.++.+.++..|+++|++.|..++...+...+.+.+.
T Consensus       178 ~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~  257 (441)
T PRK10367        178 WLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITV  257 (441)
T ss_pred             HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            99998899999999999999999998887777654322211 11111111246899999999999999999999999999


Q ss_pred             HHhcCCChhhhhhhh
Q 045377          239 LSGLLPNPKLETSVL  253 (256)
Q Consensus       239 ~~~~~g~~~~a~~~~  253 (256)
                      +++++|++++|++.+
T Consensus       258 ~~~~~G~~alAa~~I  272 (441)
T PRK10367        258 LGARLGSDIIAVNAV  272 (441)
T ss_pred             HHHhcCHHHHHHHHH
Confidence            999999999887654

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=100.00  E-value=1.3e-33  Score=245.03  Aligned_cols=251  Identities=21%  Similarity=0.226  Sum_probs=224.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL   81 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~   81 (256)
                      +++++.+.++..+|+.+++|+|++++|+++.+.++.++. ..+..|++.+.++.++|++|+||+|++++..+++..+..+
T Consensus        20 ~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~   98 (464)
T PRK00187         20 IASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWL   98 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999997 8889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 045377           82 VCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTL  161 (256)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~l  161 (256)
                      ++++..++..+.+|++++++.|+|+.+.+.+|+++..++.|+..+....++++|+.||++.+++.++...++|+++|++|
T Consensus        99 ~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~l  178 (464)
T PRK00187         99 LALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVISLAGAVANLLLNYAL  178 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            98887777557899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhh----cccccchHHHHHHHHHHHHHHHHHHHHHhcccccc--cCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHH
Q 045377          162 VFK----LELGSMGAALAFSLSTWLNVILLGLYMMYSSACEK--TRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEI  235 (256)
Q Consensus       162 i~~----~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  235 (256)
                      +++    |++|+.|+++|+.+++....+...++++++++.++  .+++..+.+++..|+++|+++|..+++..+...+.+
T Consensus       179 Ifg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i  258 (464)
T PRK00187        179 IEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTF  258 (464)
T ss_pred             HcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            975    36899999999999998888777666655432211  112222345577999999999999999999999999


Q ss_pred             HHHHHhcCCChhhhhhhh
Q 045377          236 LILLSGLLPNPKLETSVL  253 (256)
Q Consensus       236 ~~~~~~~~g~~~~a~~~~  253 (256)
                      ++.+++++|++++|++.+
T Consensus       259 ~~~~i~~~G~~alAa~~i  276 (464)
T PRK00187        259 AALCMGALGSTQLAAHQI  276 (464)
T ss_pred             HHHHHHHcCHHHHHHHHH
Confidence            999999999999987654

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=100.00  E-value=3.5e-32  Score=235.68  Aligned_cols=250  Identities=17%  Similarity=0.140  Sum_probs=224.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHL-SQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI   80 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~-g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (256)
                      +++++.+.+++.+|+.+++++ |++++++++.+.++.++. ..+..+++.+.++.++|++|+||+|++++..+++..+..
T Consensus        22 ~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~  100 (453)
T PRK09575         22 IAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLEKAKRILTTGLLLLL  100 (453)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            578999999999999999995 999999999999999987 888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377           81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW  159 (256)
Q Consensus        81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~  159 (256)
                      +.+++.+++ ..+.++++.+++.|++..+.+.+|+++..++.|+..+.....+.+|+.|+++.+++.++.+.++|+++++
T Consensus       101 ~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~  180 (453)
T PRK09575        101 LLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDY  180 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhH
Confidence            999988877 8899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045377          160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILL  239 (256)
Q Consensus       160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  239 (256)
                      .+++.+++|+.|+++|+.+++.+.+++..++++++++..+...+..+.+++..|++++++.|..++...+...+.+.+.+
T Consensus       181 ~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~  260 (453)
T PRK09575        181 LFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRL  260 (453)
T ss_pred             HHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Confidence            99988899999999999999999999988777654332221111223345778999999999999999999999999999


Q ss_pred             HhcCCC-hhhhhhh
Q 045377          240 SGLLPN-PKLETSV  252 (256)
Q Consensus       240 ~~~~g~-~~~a~~~  252 (256)
                      .+++|+ +++|++.
T Consensus       261 ~~~~g~~~~lAa~~  274 (453)
T PRK09575        261 FMEYGSALTVGAYA  274 (453)
T ss_pred             HHHhCchHHHHHHH
Confidence            999996 4677654

>PRK10189 MATE family multidrug exporter; Provisional

Probab=100.00  E-value=5e-32  Score=235.53  Aligned_cols=251  Identities=16%  Similarity=0.199  Sum_probs=224.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL   81 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~   81 (256)
                      +++++.+.+++.+|+.+++++|++++|+++++.++..+. ..+..|++.+.++.++|++|+||+|++++..+++..++..
T Consensus        39 ~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~  117 (478)
T PRK10189         39 FIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTL  117 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999997 8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHhhcC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 045377           82 VCPLVCLL-WIFMDKLLPLIG--QDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPAC  158 (256)
Q Consensus        82 ~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~  158 (256)
                      .+++.+++ ..+.+++..++.  .|+|+.+.+.+|+++..++.|+..+.....+.+|+.||++.+++.++...++|++++
T Consensus       118 ~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~  197 (478)
T PRK10189        118 FAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGGMNILNIIIS  197 (478)
T ss_pred             HHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHh
Confidence            99988877 888999999995  689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhh----cccccchHHHHHHHHHHHHHHHHHHHHHhc-c-cccccCCC-CCHHHHHhHHHHHHHHhHHHHHHHHHHH
Q 045377          159 WTLVFK----LELGSMGAALAFSLSTWLNVILLGLYMMYS-S-ACEKTRAP-VSKESLLAIGQFFRLAIPSAIMVCLKWW  231 (256)
Q Consensus       159 ~~li~~----~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~  231 (256)
                      +.+++.    +++|+.|+++|+.+++.+..++..+++.++ + ..+.++++ +.+.+++.+|+++++++|.+++......
T Consensus       198 ~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~  277 (478)
T PRK10189        198 SILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNG  277 (478)
T ss_pred             HHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhccHHHHHHHHHH
Confidence            999975    479999999999999999988877666543 2 11212222 1223567899999999999999999999


Q ss_pred             HHHHHHHHHhcCCChhhhhhhh
Q 045377          232 SMEILILLSGLLPNPKLETSVL  253 (256)
Q Consensus       232 ~~~~~~~~~~~~g~~~~a~~~~  253 (256)
                      .+.+.+.+++++|++++|++.+
T Consensus       278 ~~~~~~~~~~~~G~~~~Aa~~I  299 (478)
T PRK10189        278 GKLLTQMFVAGMGTSVIAGNFI  299 (478)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHH
Confidence            9999999999999999887654

>PRK01766 multidrug efflux protein; Reviewed

Probab=100.00  E-value=6.6e-31  Score=228.28  Aligned_cols=251  Identities=19%  Similarity=0.302  Sum_probs=225.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL   81 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~   81 (256)
                      +++++...+++.+|+.+++++|++++++++.+.++.... ..+..|++.+..|.+||++|+||+|+.++..+++..+...
T Consensus        22 ~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~  100 (456)
T PRK01766         22 LLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRERIAHQVRQGLWLALF  100 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            578899999999999999999999999999999998876 7889999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Q 045377           82 VCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWT  160 (256)
Q Consensus        82 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~  160 (256)
                      .+++.+++ ..+.+++..+++.|++..+.+.+|+++..++.++..+..++++++++.|+++++++.++++.++|++++++
T Consensus       101 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~  180 (456)
T PRK01766        101 LSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYI  180 (456)
T ss_pred             HHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence            99888877 78889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhh----cccccchHHHHHHHHHHHHHHHHHHHHHhccccc--ccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHH
Q 045377          161 LVFK----LELGSMGAALAFSLSTWLNVILLGLYMMYSSACE--KTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSME  234 (256)
Q Consensus       161 li~~----~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  234 (256)
                      +++.    +++|+.|+++++.+++.+..++..++.+|+++.+  +.+.++.+.+++..|+++++++|..++...+...+.
T Consensus       181 li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~  260 (456)
T PRK01766        181 FIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFA  260 (456)
T ss_pred             HHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHH
Confidence            9864    5789999999999999999999988877654321  122222234557799999999999999999999999


Q ss_pred             HHHHHHhcCCChhhhhhhh
Q 045377          235 ILILLSGLLPNPKLETSVL  253 (256)
Q Consensus       235 ~~~~~~~~~g~~~~a~~~~  253 (256)
                      +.+.+.+++|++++|+..+
T Consensus       261 ~~~~~~~~~G~~~lAa~~i  279 (456)
T PRK01766        261 VVTLLVSPLGTVTVAAHQI  279 (456)
T ss_pred             HHHHHHHHcChHHHHHHHH
Confidence            9999999999998887554

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.98  E-value=2.4e-29  Score=210.77  Aligned_cols=251  Identities=27%  Similarity=0.402  Sum_probs=224.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377            1 MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI   80 (256)
Q Consensus         1 i~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (256)
                      ++++++...++..+|+.+++++|++++++++.+.++.++. ..+..|++++..|.++++.|+||+|+.++..++...+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (342)
T TIGR00797         2 AILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL   80 (342)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999998887 889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377           81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW  159 (256)
Q Consensus        81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~  159 (256)
                      ..+++.+++ ..+.+++.++++.|++..+++.+++++++++.++..+..+..+.+|+.||.+...+.++.+.++++++++
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~  160 (342)
T TIGR00797        81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNY  160 (342)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhH
Confidence            999998877 8899999999887888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHh-hcc-cccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045377          160 TLVF-KLE-LGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILI  237 (256)
Q Consensus       160 ~li~-~~~-~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  237 (256)
                      .+++ ..+ +|+.|+++++.+++.+.+++..++.+|+++.+..+++..+.+++..|++++++.|..+++...+..+.+++
T Consensus       161 ~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~  240 (342)
T TIGR00797       161 ILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLA  240 (342)
T ss_pred             HHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            9986 456 77999999999999999999887777643333222222234457799999999999999999999999999


Q ss_pred             HHHhcCCChhhhhhh
Q 045377          238 LLSGLLPNPKLETSV  252 (256)
Q Consensus       238 ~~~~~~g~~~~a~~~  252 (256)
                      .+.+++|++++++..
T Consensus       241 ~i~~~~g~~~v~~~~  255 (342)
T TIGR00797       241 LLVARLGSIALAAHQ  255 (342)
T ss_pred             HHHHHcCcHHHHHHH
Confidence            999999988777543

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.93  E-value=1.4e-23  Score=182.44  Aligned_cols=190  Identities=18%  Similarity=0.189  Sum_probs=175.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL   81 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~   81 (256)
                      ++++..+.....+|..+++++|++++|+++++.++.++. ..+..|++.+.+++++|++|+||+|++++..+++..++..
T Consensus       246 ~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~  324 (464)
T PRK00187        246 GGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAV  324 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            467788999999999999999999999999999999997 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHhhcCC--CH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHH
Q 045377           82 VCPLVCLL-WIFMDKLLPLIGQ--DP---VISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLIL-CFH  154 (256)
Q Consensus        82 ~~~~~~~~-~~~~~~l~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~  154 (256)
                      .+++.+++ +.+++++.+++.+  ++   ++.+.+..++++.+++.++..++.+..+.+|+.||++.+++.++... +++
T Consensus       325 ~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~  404 (464)
T PRK00187        325 VMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVG  404 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHH
Confidence            99888877 8899999999953  33   67889999999999999999999999999999999999999999987 899


Q ss_pred             HHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH
Q 045377          155 IPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMM  192 (256)
Q Consensus       155 i~~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~  192 (256)
                      +++++++.+.+++|+.|+|+++.+++.+..+.....++
T Consensus       405 ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~  442 (464)
T PRK00187        405 APLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE  442 (464)
T ss_pred             HHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888899999999999999999887766553

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.92  E-value=5.6e-23  Score=178.97  Aligned_cols=196  Identities=16%  Similarity=0.051  Sum_probs=178.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHHH
Q 045377            3 AVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILV   82 (256)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~   82 (256)
                      +++........+.+.+++++|++++|+++++.++.++. ..+..|++++.++.++|++|+||+|++++..+.+..++...
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~  348 (478)
T PRK10189        270 IESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLG  348 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            45666677777777889999999999999999999997 89999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHHHHHHHH
Q 045377           83 CPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLIL-CFHIPACWT  160 (256)
Q Consensus        83 ~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~~~~~  160 (256)
                      ++.++++ ..+++++.++|.+|+|+.+.+..++++.++..++.+++.+..+.+||.||++.+++.++... ++.+|+.++
T Consensus       349 ~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~l  428 (478)
T PRK10189        349 LTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYI  428 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            9888877 88999999999999999999999999999999999999999999999999999998887665 788889888


Q ss_pred             HHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 045377          161 LVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEK  199 (256)
Q Consensus       161 li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~  199 (256)
                      +....++|..|+|++..+++.+..++..+++++.+|+++
T Consensus       429 l~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~  467 (478)
T PRK10189        429 LGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK  467 (478)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence            877678999999999999999999998888887776653

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.92  E-value=6.2e-23  Score=178.40  Aligned_cols=192  Identities=18%  Similarity=0.204  Sum_probs=179.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL   81 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~   81 (256)
                      .+++..+.....++..+++++|++++|+++++.++.++. ..+..|++.+.++.++|++|+||+|++++..+.+..++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~  327 (456)
T PRK01766        249 GLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLG  327 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            456778888889999999999999999999999999998 8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHHHHHHH
Q 045377           82 VCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLIL-CFHIPACW  159 (256)
Q Consensus        82 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~~~~  159 (256)
                      .+++.+++ +.+.+++.++|.+|+++.+.+..++++..++.++..++.+..+.+||.||++.++..++... ++++++.+
T Consensus       328 ~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~  407 (456)
T PRK01766        328 MALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGY  407 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHH
Confidence            99988877 88999999999999999999999999999999999999999999999999999999999877 78999999


Q ss_pred             HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377          160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYS  194 (256)
Q Consensus       160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~  194 (256)
                      ++.+.+++|+.|+|+++.+++.+..++..++.++.
T Consensus       408 ~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~  442 (456)
T PRK01766        408 ILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL  442 (456)
T ss_pred             HHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence            99887889999999999999999999888777654

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.92  E-value=5.4e-23  Score=176.94  Aligned_cols=253  Identities=45%  Similarity=0.728  Sum_probs=235.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL   81 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~   81 (256)
                      ++.++.+.....++..++||+|+.++++.+.+.+..+.....+..|+..+..+..+|++|+++++....+.+++......
T Consensus        38 i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~  117 (473)
T KOG1347|consen   38 ILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTALGVYLQRSGIVLLV  117 (473)
T ss_pred             HHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccchhhHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999998778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 045377           82 VCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTL  161 (256)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~l  161 (256)
                      .+++....+.+.+|+...+++|+++.+.+..|.+.+.+..+..........++|++++..+..+......++++++++.+
T Consensus       118 ~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~ll  197 (473)
T KOG1347|consen  118 QGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLL  197 (473)
T ss_pred             HHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 045377          162 VFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSG  241 (256)
Q Consensus       162 i~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  241 (256)
                      ++.+++|..|++++..+++.........+..... ..+.|..+.++ .+.++++++.++|.+++..++++.++++.++.+
T Consensus       198 v~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~miclE~w~~eil~l~~G  275 (473)
T KOG1347|consen  198 VSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMICLEWWAYEILVLLAG  275 (473)
T ss_pred             hhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988887665 55666666666 788999999999999999999999999999999


Q ss_pred             cCCChhhhhhhhccC
Q 045377          242 LLPNPKLETSVLSIW  256 (256)
Q Consensus       242 ~~g~~~~a~~~~~i~  256 (256)
                      .++..+++....+||
T Consensus       276 ~l~np~~~~~~~sI~  290 (473)
T KOG1347|consen  276 LLGNAKVSLASQSIC  290 (473)
T ss_pred             ccCCcHHHHHHHHHH
Confidence            999866665555553

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.91  E-value=3e-22  Score=173.14  Aligned_cols=194  Identities=24%  Similarity=0.272  Sum_probs=180.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL   81 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~   81 (256)
                      .++++........-+.+++++|++.+|+++++.++.++. ..+..|++++.++.++|++|+||+|++++..+.+..++..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~  329 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLL  329 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            467788899999999999999999999999999999998 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHHHHHHH
Q 045377           82 VCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLIL-CFHIPACW  159 (256)
Q Consensus        82 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~~~~  159 (256)
                      ++...+.+ +.+++++.++|.+|+|+.+.+..++++.++..++.+.+.+..+.+||.||++.+++.++... .+.+++.+
T Consensus       330 ~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~  409 (455)
T COG0534         330 IALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAY  409 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHH
Confidence            99888877 99999999999999999999999999999999999999999999999999999999988865 66788888


Q ss_pred             HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccc
Q 045377          160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSAC  197 (256)
Q Consensus       160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~  197 (256)
                      ++.+.. +|..|+|++...++.+..+...+++++++|.
T Consensus       410 ~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~  446 (455)
T COG0534         410 LLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWR  446 (455)
T ss_pred             HHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            888554 9999999999999999999999988877544

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.91  E-value=6.5e-22  Score=171.68  Aligned_cols=189  Identities=17%  Similarity=0.179  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377            3 AVSVLQYLLQVVSTVMVGHLSQ-LALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL   81 (256)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~~~g~-~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~   81 (256)
                      +++....+...+.+.+++++|+ +++|+++++.++.++. ..+..|++.+.++.+||++|+||+|++++..+++..++..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~  323 (453)
T PRK09575        245 FMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVL  323 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            4566666777777888889885 6899999999999997 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHhhcCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377           82 VCPLVCLL-WIFMDKLLPLIGQ-DPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW  159 (256)
Q Consensus        82 ~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~  159 (256)
                      .+++.+++ ..+++++..+|.. |||+.+.+.+++++.+++.++.++..+..+.+||.||++.+++.++...+++++..+
T Consensus       324 ~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~ip~~~  403 (453)
T PRK09575        324 AGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNMLIQLPFLF  403 (453)
T ss_pred             HHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhHHHHHHHHH
Confidence            99998887 8899999999985 788999999999999999999999999999999999999999999998888999888


Q ss_pred             HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377          160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYS  194 (256)
Q Consensus       160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~  194 (256)
                      ++.  +.+|..|+|+++.+++.+..+...+.++++
T Consensus       404 ll~--~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~~  436 (453)
T PRK09575        404 ILP--KWLGVDGVWLAMPLSNIALSLVVAPMLWRD  436 (453)
T ss_pred             HHH--HHHCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence            876  348999999999999999988887776654

>TIGR01695 mviN integral membrane protein MviN

Probab=99.90  E-value=7.6e-21  Score=167.24  Aligned_cols=219  Identities=16%  Similarity=0.079  Sum_probs=187.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL   81 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~   81 (256)
                      .+++....+...+|+.+.+.+|++++++|+.+.++.+++...+..+++.+..|.++|++|+||+|+.++..+++.+....
T Consensus       233 ~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~  312 (502)
T TIGR01695       233 TLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL  312 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            45778889999999998666899999999999999998734568899999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHhhcCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 045377           82 VCPLVCLL-WIFMDKLLPLIGQ----DPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIP  156 (256)
Q Consensus        82 ~~~~~~~~-~~~~~~l~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~  156 (256)
                      .+.+.+++ ..+++++..++.+    |++.++.+.+++++++++.++..++.+..+.+++.||++.+++.++...+++++
T Consensus       313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~  392 (502)
T TIGR01695       313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNAL  392 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHH
Confidence            99998887 8899999998865    567788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHH
Q 045377          157 ACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKW  230 (256)
Q Consensus       157 ~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  230 (256)
                      ++++++  +.+|..|+++++.+++.+..++..++.+|+.+.        .+..+..+++.|...++.++....+
T Consensus       393 l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~as~~m~~~~~  456 (502)
T TIGR01695       393 LSLLLI--FPLGLVGIALATSAASMVSSVLLYLMLNRRLKG--------ILPFGVLKVLAKLVIASAIIGGVLY  456 (502)
T ss_pred             HHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc--------CCchHHHHHHHHHHHHHHHHHHHHH
Confidence            999998  569999999999999999999988777764211        0112445566666666666655543

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.89  E-value=1.5e-20  Score=164.72  Aligned_cols=237  Identities=14%  Similarity=0.148  Sum_probs=195.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHH-HHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSL-LSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISL   79 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~-~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~   79 (256)
                      +++++...+.+.+|+.+++| +|+++.|.++.+.++.++. ..+ ..|++.+..+.++|+.|+||+|+.++.++.++.+.
T Consensus         9 ~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~-~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~   87 (488)
T TIGR02900         9 TIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLF-ITLTTGGLPVAISKFVAEASAKNDRKNIKKILKVSLIFT   87 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHH-HHHHhCCcHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence            57899999999999999999 5999999999999999987 444 56999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Q 045377           80 ILVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPAC  158 (256)
Q Consensus        80 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~  158 (256)
                      ...+++.+++ ..+.+++.+.+.++++.    ..+++++++..++..+.....+.+|+.+|.+.....++++.++++.++
T Consensus        88 l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~  163 (488)
T TIGR02900        88 LIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQIVRISVV  163 (488)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHHHHHHHH
Confidence            9999888877 77777777766666543    356788899999999999999999999999999999999999988776


Q ss_pred             HHHHhh-----cccccchHHHHHHHHHHHHHHHHHHHHHhcccccc--cCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHH
Q 045377          159 WTLVFK-----LELGSMGAALAFSLSTWLNVILLGLYMMYSSACEK--TRAPVSKESLLAIGQFFRLAIPSAIMVCLKWW  231 (256)
Q Consensus       159 ~~li~~-----~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  231 (256)
                      ..++..     .+.++.|+++++.+++.+..+...++.+|+++.+.  .+.+..+.+++..|++++.+.|..+++.....
T Consensus       164 ~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~  243 (488)
T TIGR02900       164 ALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFIGSL  243 (488)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655532     35678889999999999999988766655433211  11111233457899999999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 045377          232 SMEILILLSGLL  243 (256)
Q Consensus       232 ~~~~~~~~~~~~  243 (256)
                      ...+++.+.++.
T Consensus       244 ~~~~d~~ii~~~  255 (488)
T TIGR02900       244 LYFLETLLVPQR  255 (488)
T ss_pred             HHHHHHHHHHHH
Confidence            999998887654

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.89  E-value=5.8e-20  Score=161.67  Aligned_cols=242  Identities=11%  Similarity=0.100  Sum_probs=191.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhc-CChHHH-HHHHHHHHHHHHHHHHHH-HhhHhHHHHHHHhhhCCcccchHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGH-LSQLAL-SSVAIATSLTNVTGFSLL-SGMAGGLETLCGQAYGAAQFRKLGVHTYTAIIS   78 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~-a~~~~~~~i~~~~~~~~~-~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~   78 (256)
                      .++++.+.+++++|..++++ +|+++. ++++.+.++.+....... .|++.+..|...++.+++  |+.++...++...
T Consensus        10 ~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~~~~~~~~~   87 (502)
T TIGR01695        10 SLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARRAFANTVTT   87 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHH
Confidence            57899999999999999999 799999 899999999877623333 468888777776654332  6777777776665


Q ss_pred             HHHH-HHHHHHH-HHHHHHHHhhc--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 045377           79 LILV-CPLVCLL-WIFMDKLLPLI--GQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFH  154 (256)
Q Consensus        79 ~~~~-~~~~~~~-~~~~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~  154 (256)
                      .... ++...++ +.+++++..++  +.+++..+.+.+|++++.++.++..+..+.++++|+.||.+.+.+.++..++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~  167 (502)
T TIGR01695        88 LLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILFNIGV  167 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHHHHHHHH
Confidence            5544 4444555 77888888877  346666788999999999999999999999999999999999999999998887


Q ss_pred             HHHHHHHHhhcccccchHH--HHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHH
Q 045377          155 IPACWTLVFKLELGSMGAA--LAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWS  232 (256)
Q Consensus       155 i~~~~~li~~~~~g~~G~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  232 (256)
                      +.....+.  +++|..|++  +++.+++.+..+...++.+|++...++  +++ .+++..|++++.+.|..++.......
T Consensus       168 i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~k~~l~~~~p~~~~~~~~~~~  242 (502)
T TIGR01695       168 ILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP--RFN-FRDPGLKRFLKLFLPTTLGSSASQIT  242 (502)
T ss_pred             HHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC--cCC-CCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            77544444  679999998  999999999998887777654321111  111 23366899999999999999999999


Q ss_pred             HHHHHHHHhcCCChhhhh
Q 045377          233 MEILILLSGLLPNPKLET  250 (256)
Q Consensus       233 ~~~~~~~~~~~g~~~~a~  250 (256)
                      ..+++.+.+.+|+++++.
T Consensus       243 ~~id~~~~~~~~~~~v~~  260 (502)
T TIGR01695       243 LLINTALASFLEIGSVSA  260 (502)
T ss_pred             HHHHHHHHhcCCcchHHH
Confidence            999999988888877764

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK15099 O-antigen translocase; Provisional

Probab=99.87  E-value=1.3e-19  Score=155.79  Aligned_cols=241  Identities=12%  Similarity=0.035  Sum_probs=194.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI   80 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (256)
                      ..+++.....+++-..+++| +|+++.|.++...++..........|++.+.+..++|+  ++|+|+.++..+.++.+..
T Consensus        11 ~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~   88 (416)
T PRK15099         11 AASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVVGTSSAMVL   88 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHHHHHHHHHH
Confidence            35677888888888989999 59999999999999999874444888888888899988  6788999999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377           81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW  159 (256)
Q Consensus        81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~  159 (256)
                      ..+++.+++ +.+.+|+...+.++++ +   ...+.+..+..++..+.....+.+|+.||.+.++...+.+.++|+.+ +
T Consensus        89 ~~~~i~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~  163 (416)
T PRK15099         89 GFSTLLALVFLLAAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGSLIGVAA-Y  163 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            999888877 8888999887777664 2   34566667767777888899999999999999999999999999887 4


Q ss_pred             HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045377          160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILL  239 (256)
Q Consensus       160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  239 (256)
                      ++... ..|+.|+++|+.+++.+..+...++.+|+++.+..+.++ +.+++..|++++++.|..+++...+.....++.+
T Consensus       164 i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~  241 (416)
T PRK15099        164 YLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNL  241 (416)
T ss_pred             HHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44432 249999999999999999888777766543321111111 2345778999999999999999999999999998


Q ss_pred             Hh-cCCChhhhhh
Q 045377          240 SG-LLPNPKLETS  251 (256)
Q Consensus       240 ~~-~~g~~~~a~~  251 (256)
                      ++ .+|+++++..
T Consensus       242 l~~~~g~~~vg~y  254 (416)
T PRK15099        242 LAAHYSWDEVGIW  254 (416)
T ss_pred             HHhcCCHHHhhHH
Confidence            85 8898877653

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.86  E-value=4.3e-22  Score=149.26  Aligned_cols=158  Identities=23%  Similarity=0.356  Sum_probs=152.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL   81 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~   81 (256)
                      .++++.+.+...+|+.+++++|++++++++.+.++.++. ..+..|++.+..+.+||++|+||+|+.++..+++..+...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~   81 (162)
T PF01554_consen    3 ALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSLI   81 (162)
T ss_dssp             HHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccchh
Confidence            578999999999999999999999999999999999998 8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHHHHHHH
Q 045377           82 VCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLIL-CFHIPACW  159 (256)
Q Consensus        82 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~~~~  159 (256)
                      ++++.+++ ..+.+++.++++.|++..+.+.+|+++..++.|+..+.....+++++.||++..++.++... +++++++|
T Consensus        82 ~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~y  161 (162)
T PF01554_consen   82 IGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLAY  161 (162)
T ss_dssp             HHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHh
Confidence            99999988 99999999999999999999999999999999999999999999999999999999999998 99999887


Q ss_pred             H
Q 045377          160 T  160 (256)
Q Consensus       160 ~  160 (256)
                      +
T Consensus       162 l  162 (162)
T PF01554_consen  162 L  162 (162)
T ss_dssp             H
T ss_pred             C
Confidence            5

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.85  E-value=6.6e-19  Score=152.15  Aligned_cols=185  Identities=22%  Similarity=0.156  Sum_probs=155.3

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHHH
Q 045377            3 AVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILV   82 (256)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~   82 (256)
                      +++........+-+.+++++|++++|+++++.++.++. ..+..|++.+.++.++|++|+||+|++++..+++.++....
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~-~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~  321 (441)
T PRK10367        243 LRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT-AYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV  321 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            46677777888888999999999999999999999998 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHHHH
Q 045377           83 CPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSL---ILPMFASSFLILCFHIPAC  158 (256)
Q Consensus        83 ~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~i~~~~~~i~~~  158 (256)
                      +...+++ ..+++++..+|.+|+|+.+.+..++++.++..+.........+.++|.+|   ++.+++.+.....+    .
T Consensus       322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~----~  397 (441)
T PRK10367        322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFAL----T  397 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH----H
Confidence            9998887 88999999999999999999999999998764433345455555665555   88888877766432    1


Q ss_pred             HHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377          159 WTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYS  194 (256)
Q Consensus       159 ~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~  194 (256)
                      .+..  +++|..|+|++..+++.+..++..++++++
T Consensus       398 ~~~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~  431 (441)
T PRK10367        398 LLTL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH  431 (441)
T ss_pred             HHHH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1222  468999999999999999999988766554

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.85  E-value=5.2e-18  Score=146.82  Aligned_cols=191  Identities=15%  Similarity=0.092  Sum_probs=178.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL   81 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~   81 (256)
                      ++++...++...+|+.+.+.+++.++++++.+.++.+++...+..+++++..|..++...+||.++.++..++..+....
T Consensus       208 ~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~  287 (451)
T PF03023_consen  208 LLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILL  287 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            46778889999999999999999999999999999999867889999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHhhcCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 045377           82 VCPLVCLL-WIFMDKLLPLIGQ----DPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIP  156 (256)
Q Consensus        82 ~~~~~~~~-~~~~~~l~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~  156 (256)
                      +.+|.++. ..+++|+++++.+    +++..+.....+++++++.|+..++..+...+.+.||++.+++.++.+.++|++
T Consensus       288 i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~  367 (451)
T PF03023_consen  288 ILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNII  367 (451)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHH
Confidence            99999987 9999999997742    677788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377          157 ACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYS  194 (256)
Q Consensus       157 ~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~  194 (256)
                      ++..+.  +.+|..|.++|+.++..+.++...+.++|+
T Consensus       368 l~~~l~--~~~g~~Glala~sl~~~i~~~~l~~~l~r~  403 (451)
T PF03023_consen  368 LSILLV--PFFGVAGLALATSLSAIISALLLYILLRRR  403 (451)
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888  779999999999999999999998888766

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.81  E-value=6.6e-17  Score=139.01  Aligned_cols=225  Identities=15%  Similarity=0.099  Sum_probs=193.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL   81 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~   81 (256)
                      .++..+.++...+|+.+-+.+.+..++.+..+.++.+++...+..++++...|..|++..++|.++.++..+++++++..
T Consensus       242 ~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~ll  321 (518)
T COG0728         242 LLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLL  321 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence            46778889999999999999999999999999999999977999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHhhcCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 045377           82 VCPLVCLL-WIFMDKLLPLIGQ----DPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIP  156 (256)
Q Consensus        82 ~~~~~~~~-~~~~~~l~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~  156 (256)
                      +++|.+.. ..+++|++..+.+    +++....+.+.+..+..+.++..+..++...+++.+|+|.+++..+++.++|+.
T Consensus       322 l~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~  401 (518)
T COG0728         322 LTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNIL  401 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHHH
Confidence            99999988 9999999987743    556677888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHH
Q 045377          157 ACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEI  235 (256)
Q Consensus       157 ~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  235 (256)
                      +++.+.  +.+|..|.+.++.++.++++.+.++.++|+....+      ...+...+ ..|..+.++++....+.....
T Consensus       402 l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~------~~~~~~~~-~~k~~l~~~i~~~~~~~~~~~  471 (518)
T COG0728         402 LNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP------GRGWGLFL-ILKLLLASAIMAAALLALLHL  471 (518)
T ss_pred             HHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------cchhhHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            997777  67999999999999999999999888887643222      12233344 566666666665554444333

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.80  E-value=1e-17  Score=146.94  Aligned_cols=188  Identities=16%  Similarity=0.155  Sum_probs=162.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhcC----C---hH---HHHHH-HHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHL----S---QL---ALSSV-AIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGV   70 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~----g---~~---~~a~~-~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~   70 (256)
                      +++++...+.+.+|+.++++.    |   .+   ..+.+ +.+.++.+++ ..+..+++.+..|.++|+.|+||+|+.++
T Consensus       235 ~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~~s~~~~~~~~~~~~~  313 (488)
T TIGR02900       235 TLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPDISEAMAKKNYSSIEK  313 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            467788899999999999873    2   12   22323 3566777777 77889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 045377           71 HTYTAIISLILVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFL  149 (256)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~  149 (256)
                      ..+++.++....+.+.++. ..++++++.++.+++    ++.++++++++..++..+.....+.+++.||++..++.++.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  389 (488)
T TIGR02900       314 RINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLI  389 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence            9999999999999998877 888999999887543    36788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377          150 ILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYS  194 (256)
Q Consensus       150 ~~~~~i~~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~  194 (256)
                      ..++++++++.++..|++|..|+++++.+++.+..+...+..+|.
T Consensus       390 ~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~  434 (488)
T TIGR02900       390 GAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN  434 (488)
T ss_pred             HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998766789999999999999999999998888754

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PRK10459 colanic acid exporter; Provisional

Probab=99.77  E-value=6.7e-16  Score=135.66  Aligned_cols=186  Identities=18%  Similarity=0.168  Sum_probs=163.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI   80 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (256)
                      +.+++...+.+.+|+.++++ +|++++|.|+.+.++.+.+...+...++....|..++.  ++|+++.++.+++..+...
T Consensus       217 ~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~  294 (492)
T PRK10459        217 TAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLG  294 (492)
T ss_pred             HHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHH
Confidence            45677888999999999999 59999999999999998864555666778889999886  6788899999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377           81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW  159 (256)
Q Consensus        81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~  159 (256)
                      ..++|++++ ..+++|++.++.+++  ++++.+.+++++++..+..........+++.||++.....++...+++++..+
T Consensus       295 ~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~  372 (492)
T PRK10459        295 IINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIV  372 (492)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHH
Confidence            999998887 888999998887665  78889999999999999999999999999999999999999999888888877


Q ss_pred             HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHh
Q 045377          160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMY  193 (256)
Q Consensus       160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~  193 (256)
                      .+.  +.+|..|+++++.+++.+.+....++..|
T Consensus       373 ~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~  404 (492)
T PRK10459        373 IGG--QLAGLIGVALGFLLVQIINTILSYFLMIK  404 (492)
T ss_pred             HHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776  56899999999999999998888877744

>PRK15099 O-antigen translocase; Provisional

Probab=99.76  E-value=4.5e-16  Score=133.95  Aligned_cols=185  Identities=11%  Similarity=0.042  Sum_probs=161.9

Q ss_pred             hHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVG-HLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI   80 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~-~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (256)
                      .++++...+.+..|+.+++ ++|++++|.|+.+.++.+.....+..+++++..|.++++   +|+|+.++..++......
T Consensus       225 ~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~  301 (416)
T PRK15099        225 LITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVL  301 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHH
Confidence            4677888999999999997 589999999999999988433788999999999999995   577889999999999998


Q ss_pred             HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377           81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW  159 (256)
Q Consensus        81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~  159 (256)
                      ..+.+.++. ..++++++.++.+|+  ++++.+++++++++..+...+...+..+...++++......+...++++++++
T Consensus       302 ~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~i~l~~  379 (416)
T PRK15099        302 PAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLTGFAH  379 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888877 799999999998776  66688899999999999888888887777888888999999999999999999


Q ss_pred             HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHh
Q 045377          160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMY  193 (256)
Q Consensus       160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~  193 (256)
                      +++  |.+|..|+++++.+++.+..........+
T Consensus       380 ~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~~  411 (416)
T PRK15099        380 WLI--PLHGALGAAQAYMATYIVYFSLCCGVFLL  411 (416)
T ss_pred             HHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998  77999999999999999999887755543

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.74  E-value=1.1e-14  Score=126.28  Aligned_cols=223  Identities=14%  Similarity=0.134  Sum_probs=185.6

Q ss_pred             CChH-HHHHHHHHHHHHHHHHHHHH-HhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 045377           22 LSQL-ALSSVAIATSLTNVTGFSLL-SGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLL-WIFMDKLLP   98 (256)
Q Consensus        22 ~g~~-~~a~~~~~~~i~~~~~~~~~-~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~   98 (256)
                      +|.. +..+|..+.++.+++...+. .++..+..|...+.. ++|+|+.++..+.........++.++++ +++++++++
T Consensus         5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~   83 (451)
T PF03023_consen    5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR   83 (451)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5654 56689999999999833444 568999999999998 8899999999999988888888777777 899999999


Q ss_pred             hc--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhhcccc---cchHH
Q 045377           99 LI--GQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELG---SMGAA  173 (256)
Q Consensus        99 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~li~~~~~g---~~G~~  173 (256)
                      .+  +.|++..+.+.+.++++.+..++..+..++.+++|+++|...+....+..++..+.....+.  ...|   +.+.+
T Consensus        84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la  161 (451)
T PF03023_consen   84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALA  161 (451)
T ss_pred             HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHH
Confidence            88  34678889999999999999999999999999999999999999888888877665444433  4567   88999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChhhhh
Q 045377          174 LAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLET  250 (256)
Q Consensus       174 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~  250 (256)
                      ++..++..+..+..+...+|.+.+.+...++   +.+..|++++...|..+.....++...++..+++.+++..++.
T Consensus       162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~  235 (451)
T PF03023_consen  162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDW---RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSA  235 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccccCCC---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHH
Confidence            9999999999999998888765442322221   1256889999999999999999999999999999999988875

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.71  E-value=4.6e-15  Score=129.96  Aligned_cols=184  Identities=17%  Similarity=0.167  Sum_probs=164.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI   80 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (256)
                      ..++....+.+.+|+.++++ +|++++|.|+.+.++.... ..+..+++.+..|..++...++|+++.++..+++.+...
T Consensus       223 ~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~  301 (480)
T COG2244         223 LLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLL  301 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            46788999999999999999 5999999999999999987 899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377           81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW  159 (256)
Q Consensus        81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~  159 (256)
                      ..++|..++ ..+++|++..+.+++  +..+...++++++..++..+.......+++.|+++...+.+..+.++|..+++
T Consensus       302 ~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~  379 (480)
T COG2244         302 LISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNL  379 (480)
T ss_pred             HHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHh
Confidence            999999988 899999999887766  44488899999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccchHHHHHHHHHHHHHHHHHHHH
Q 045377          160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYM  191 (256)
Q Consensus       160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~  191 (256)
                      +++  +.+|..|++.++ .+.........+..
T Consensus       380 ~li--~~~g~~g~~~a~-~~~~~~~~~~~~~~  408 (480)
T COG2244         380 LLI--PRFGLIGAAIAT-ASVIALALLLFYIL  408 (480)
T ss_pred             HHH--HhhhhhhHHHHH-HHHHHHHHHHHHHH
Confidence            999  789999999999 55333333333333

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.58  E-value=7.8e-12  Score=108.02  Aligned_cols=245  Identities=15%  Similarity=0.124  Sum_probs=191.3

Q ss_pred             HHHHHHHHHHHHHHHHHhc-CChH-HHHHHHHHHHHHHHHHHHHH-HhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHH
Q 045377            3 AVSVLQYLLQVVSTVMVGH-LSQL-ALSSVAIATSLTNVTGFSLL-SGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISL   79 (256)
Q Consensus         3 ~~~~~~~~~~~~~~~~i~~-~g~~-~~a~~~~~~~i~~~~~~~~~-~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~   79 (256)
                      ..+++..+.+++...+++. +|.. ...++.++.++.+++--.+. .+++++..|...++..++++|+.++..+...-..
T Consensus        18 ~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l   97 (518)
T COG0728          18 SATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAARFFSRLVTGLL   97 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHHHHHHHHHHHHH
Confidence            4567788888888888888 6874 56689999999998734443 3458999999999988877777777777777566


Q ss_pred             HHHHHHHHHH-HHHHHHHHhhc-CC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 045377           80 ILVCPLVCLL-WIFMDKLLPLI-GQ--DPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHI  155 (256)
Q Consensus        80 ~~~~~~~~~~-~~~~~~l~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i  155 (256)
                      ....+..++. .++.+.++... ..  |++....+....+++.++.++..+....+++++..+|...+.+..+..++.-+
T Consensus        98 ~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I  177 (518)
T COG0728          98 TLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSVI  177 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhhhHHHHHHHHH
Confidence            6666666666 77777777444 33  23333368888899999999999999999999999999999999988888777


Q ss_pred             HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHH
Q 045377          156 PACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEI  235 (256)
Q Consensus       156 ~~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  235 (256)
                      .....+.........+.+|+..++-++..+..+...+|.+...++..+++  + +..|++.+...|..+.....++...+
T Consensus       178 ~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~--~-~~lk~~~~~~~p~~l~~sisQi~lli  254 (518)
T COG0728         178 GLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFK--D-PGLKRFLKLMLPALLGVSISQINLLI  254 (518)
T ss_pred             HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC--c-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554443222236789999999999999999999998764433333222  1 66899999999999999999999999


Q ss_pred             HHHHHhcCCChhhhh
Q 045377          236 LILLSGLLPNPKLET  250 (256)
Q Consensus       236 ~~~~~~~~g~~~~a~  250 (256)
                      ++.+++.+.+..++.
T Consensus       255 ~~~iAS~l~~Gsis~  269 (518)
T COG0728         255 DTAIASFLAEGSVSW  269 (518)
T ss_pred             HHHHHHhhccccHHH
Confidence            999999998877653

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=99.57  E-value=1.2e-11  Score=99.99  Aligned_cols=233  Identities=13%  Similarity=0.156  Sum_probs=167.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI   80 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (256)
                      ..+++.....+++...++.| +|+++.|.++....+.++.......|+..+.....+++..+  +++.++..........
T Consensus         9 ~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~   86 (273)
T PF01943_consen    9 FLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSVLFLLL   86 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHH
Confidence            46788888999999999999 69999999999999999874445889999988888876432  3444444444444443


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Q 045377           81 LVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWT  160 (256)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~  160 (256)
                      ..++.........    ..+..++. .   ..+........+..........++++.++.+.....++...+........
T Consensus        87 ~~~~i~~~~~~~~----~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (273)
T PF01943_consen   87 IFSLIFLLILLIA----SFFGNPSL-S---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILL  158 (273)
T ss_pred             HHHHHHHHHHHHH----HHcCCchH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333332221    23343332 1   12222222222578888889999999999999999999998888877666


Q ss_pred             HHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045377          161 LVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLS  240 (256)
Q Consensus       161 li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  240 (256)
                      +... ..+..+..++..++..+..+...++.+|+.+     .+..+++++..|+.++.+.|..+.....+.....+..++
T Consensus       159 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii  232 (273)
T PF01943_consen  159 LLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLII  232 (273)
T ss_pred             HHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            6654 3458999999999999998888888776542     222223357899999999999999999999999999998


Q ss_pred             hcC-CChhhhh
Q 045377          241 GLL-PNPKLET  250 (256)
Q Consensus       241 ~~~-g~~~~a~  250 (256)
                      +++ |+++++.
T Consensus       233 ~~~~g~~~vg~  243 (273)
T PF01943_consen  233 GYFLGPEAVGI  243 (273)
T ss_pred             HHhCCHHHHHH
Confidence            888 6666553

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PRK10459 colanic acid exporter; Provisional

Probab=99.51  E-value=2.4e-11  Score=106.93  Aligned_cols=228  Identities=12%  Similarity=0.100  Sum_probs=164.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI   80 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (256)
                      .+++......+++....++| +|+++.|.++.+..+.++.......|++.+..    |.   +|.  .++..+..+....
T Consensus        15 ~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~--~~~~~~~~~~~~~   85 (492)
T PRK10459         15 AISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDI--SHLQLSTLYWLNV   85 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccC--CHHHHHHHHHHHH
Confidence            46788888899999999999 69999999999999999874455667766542    22   111  1234455566666


Q ss_pred             HHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377           81 LVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW  159 (256)
Q Consensus        81 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~  159 (256)
                      ..+....++ +.+.+++..++. +++    ....+++..+..++..+.......++..++.+......+...++......
T Consensus        86 ~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i  160 (492)
T PRK10459         86 GLGIVVFVLVFLLSPLIADFYH-NPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAV  160 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC-Chh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            666666666 555555555544 443    23567778888888888888999999999988888888888777777666


Q ss_pred             HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045377          160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILL  239 (256)
Q Consensus       160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  239 (256)
                      .+.. .+.|..+..++..+++.+..+...+..+++ +  ++..++   +++..|++++++.|....+...+.....++.+
T Consensus       161 ~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~-~--~~~~~~---~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~  233 (492)
T PRK10459        161 VSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKI-Y--RPALHF---SLASVKPNLSFGAWQTAERIINYLNTNIDTIL  233 (492)
T ss_pred             HHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhccc-C--Ccccee---cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhh
Confidence            6554 478999999999999988776654333222 1  111112   23568999999999999999999999999998


Q ss_pred             HhcC-CChhhhh
Q 045377          240 SGLL-PNPKLET  250 (256)
Q Consensus       240 ~~~~-g~~~~a~  250 (256)
                      ++++ |++++..
T Consensus       234 lg~~lg~~~vG~  245 (492)
T PRK10459        234 IGRILGAEVLGG  245 (492)
T ss_pred             hhHhhchHhhhh
Confidence            8776 7666543

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=99.42  E-value=1.2e-09  Score=87.43  Aligned_cols=217  Identities=14%  Similarity=0.176  Sum_probs=147.7

Q ss_pred             HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q 045377           11 LQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLL   89 (256)
Q Consensus        11 ~~~~~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (256)
                      .++.-..+++| +|+++.|.|+....+..+.......|+......    . .++|+++.++..+.......+.++....+
T Consensus         3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (251)
T PF13440_consen    3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAIL   77 (251)
T ss_pred             HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677788888 699999999999999998733335665555433    2 23455566666555554444433333322


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 045377           90 WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGS  169 (256)
Q Consensus        90 ~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~  169 (256)
                         ...+..++ ++++    ...++...++..+.........+.+++.+|.+..........+........+.. .+.+.
T Consensus        78 ---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (251)
T PF13440_consen   78 ---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNL  148 (251)
T ss_pred             ---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhH
Confidence               11122233 3332    234566777888889999999999999999888888888888877544444443 23488


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCChhh
Q 045377          170 MGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGL-LPNPKL  248 (256)
Q Consensus       170 ~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~  248 (256)
                      .+..++..++..+..+......+++.+     .+.   +.+.. +..+.+.|..+.....+.....+..+++. +|++++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~  219 (251)
T PF13440_consen  149 WSILLAFIISALLALLISFYLLRRKLR-----LSF---KFSWR-RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAV  219 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccC-----CCc---hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            899999999888887776654332211     111   11222 37899999999999999999999999998 788777


Q ss_pred             hh
Q 045377          249 ET  250 (256)
Q Consensus       249 a~  250 (256)
                      +.
T Consensus       220 g~  221 (251)
T PF13440_consen  220 GI  221 (251)
T ss_pred             HH
Confidence            64

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.37  E-value=2.3e-11  Score=101.97  Aligned_cols=115  Identities=21%  Similarity=0.307  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL   81 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~   81 (256)
                      +++++...+...+|+.+++++|++++++|+.+.++.++. ..+..+++.+..|.+++++++||+|+.++..+++.+....
T Consensus       226 ~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (342)
T TIGR00797       226 AFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLL  304 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            467888899999999999999999999999999999987 8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 045377           82 VCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWL  117 (256)
Q Consensus        82 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~  117 (256)
                      .+++..++ ..+++++.+++.+||++.+.+..++++.
T Consensus       305 ~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  341 (342)
T TIGR00797       305 LGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV  341 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            99998887 8899999999999999999998888764

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.27  E-value=2.4e-09  Score=93.98  Aligned_cols=231  Identities=16%  Similarity=0.182  Sum_probs=159.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHH-HHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGH-LSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVH-TYTAIISL   79 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~-~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~-~~~~~~~~   79 (256)
                      ..+++...+..++....++| +|+++.|.++.+..+.++.......|+..+....++++.+++|++..+.. ........
T Consensus        16 ~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~~~~~~~~l~~~   95 (480)
T COG2244          16 LLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLILLSVLLLLLLA   95 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence            46788888999999999999 69999999999999999984455699999999999988766655555554 44444444


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Q 045377           80 ILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACW  159 (256)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~  159 (256)
                      ...+.+......+..+.      ++    .....+++.....+.........+.+|+.++.+......+.. ........
T Consensus        96 ~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  164 (480)
T COG2244          96 LILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVF  164 (480)
T ss_pred             HHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHH
Confidence            44433333333332222      12    234557788999999999999999999999988888774444 11122222


Q ss_pred             HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhc-ccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 045377          160 TLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYS-SACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILIL  238 (256)
Q Consensus       160 ~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  238 (256)
                      .+.   +.......++...+..........+.+++ ++.++..  + +..++..|+.++.++|..+.....+.....++.
T Consensus       165 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~  238 (480)
T COG2244         165 ALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPI--L-RFSLALLKELLRFGLPLLLSSLLNFLFTNIDTL  238 (480)
T ss_pred             HHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--c-CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            222   13456667777777777666666555422 1111111  1 113578999999999999999999999999999


Q ss_pred             HHhcC-CChhhh
Q 045377          239 LSGLL-PNPKLE  249 (256)
Q Consensus       239 ~~~~~-g~~~~a  249 (256)
                      +.+.+ |++++.
T Consensus       239 ~i~~~l~~~~vG  250 (480)
T COG2244         239 LLGLFLGPAQVG  250 (480)
T ss_pred             HHHHHhhhhHhe
Confidence            88877 655554

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=99.08  E-value=8.3e-09  Score=75.68  Aligned_cols=79  Identities=22%  Similarity=0.197  Sum_probs=74.9

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHh
Q 045377          114 SMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMY  193 (256)
Q Consensus       114 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~  193 (256)
                      +++++++.++..+....++.+++.||++.....++.+.++|+++++.++  |++|..|+++|+.+++.....+..++.+|
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k   79 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK   79 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999999999999999999999999999998  78999999999999999999999888887


Q ss_pred             c
Q 045377          194 S  194 (256)
Q Consensus       194 ~  194 (256)
                      +
T Consensus        80 ~   80 (146)
T PF14667_consen   80 K   80 (146)
T ss_pred             H
Confidence            5

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.04  E-value=5.3e-10  Score=96.95  Aligned_cols=181  Identities=12%  Similarity=0.122  Sum_probs=155.8

Q ss_pred             HHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHHHHHHHHHH-
Q 045377           13 VVSTVMVGHLS--QLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLL-   89 (256)
Q Consensus        13 ~~~~~~i~~~g--~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   89 (256)
                      .+-....|.++  +.++++.++........ +....+++.+.++.+++.+|+++++++|.....+.......+...+.. 
T Consensus       268 eil~l~~G~l~np~~~~~~~sI~~~~~~~~-~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~  346 (473)
T KOG1347|consen  268 EILVLLAGLLGNAKVSLASQSICLEIGGWH-LMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTL  346 (473)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34445566665  46899999999999987 888999999999999999999999999999999999888888888876 


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHHHHHHHHHHhhcccc
Q 045377           90 WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLIL-CFHIPACWTLVFKLELG  168 (256)
Q Consensus        90 ~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~~~~~li~~~~~g  168 (256)
                      +...+.+...|..|+++.+...+..++++.+...+..+.+.++..+|.|..+...+.++... ++.++....+-+..++|
T Consensus       347 ~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g  426 (473)
T KOG1347|consen  347 LACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFG  426 (473)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecC
Confidence            88899999999999999999999999999999999999999999999999999888887766 56677777766667899


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377          169 SMGAALAFSLSTWLNVILLGLYMMYS  194 (256)
Q Consensus       169 ~~G~~~a~~i~~~~~~~~~~~~~~~~  194 (256)
                      ..|.|.+...+..+..........+.
T Consensus       427 ~~glw~G~~~~~~~~~~~l~~~~~~t  452 (473)
T KOG1347|consen  427 VKGLWIGILLGFSVQTLVLAIVTART  452 (473)
T ss_pred             ceEEEeehHHHHHHHHHHHHHheeec
Confidence            99999999999666666665555443

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=98.78  E-value=2.3e-05  Score=63.27  Aligned_cols=235  Identities=13%  Similarity=0.050  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHHHHHHhcC--Ch-HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHH
Q 045377            4 VSVLQYLLQVVSTVMVGHL--SQ-LALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLI   80 (256)
Q Consensus         4 ~~~~~~~~~~~~~~~i~~~--g~-~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~   80 (256)
                      +++...+...+-+.-+++-  .+ +.+|+|+++..+.-++ ..+...+-.....++     +++++| ++..........
T Consensus        23 ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~rsr-r~~vl~~~vag~   95 (345)
T PF07260_consen   23 TSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSKRSR-RKAVLCMAVAGA   95 (345)
T ss_pred             HHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cchhhh-HHHHHHHHHHHH
Confidence            3444444444555555552  22 4599999999998887 667666666644444     322222 222222222222


Q ss_pred             HHHHHHHHH--HHHHHHHH-hhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 045377           81 LVCPLVCLL--WIFMDKLL-PLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPA  157 (256)
Q Consensus        81 ~~~~~~~~~--~~~~~~l~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~  157 (256)
                      +......++  --+...++ ..++.+|++.+.+...+.++.....++++....++++-=.+++......++...+..++.
T Consensus        96 v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~  175 (345)
T PF07260_consen   96 VAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVL  175 (345)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHH
Confidence            222221222  22233333 456789999999999999999999999999999999885555666666666655555555


Q ss_pred             HHHHHhhccccc-chHHH---HHHHHHHHHHHHH-HHHHHhcccccccCCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHH
Q 045377          158 CWTLVFKLELGS-MGAAL---AFSLSTWLNVILL-GLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWS  232 (256)
Q Consensus       158 ~~~li~~~~~g~-~G~~~---a~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  232 (256)
                      ...++.. ++.. ..+++   +...+..+.+-+. +.++++.....++..+..+.+....++++++.+|.+.......++
T Consensus       176 v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~S  254 (345)
T PF07260_consen  176 VAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRIS  254 (345)
T ss_pred             HHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            5555532 1111 22221   1122222222111 223323333333444444444577999999999999999999999


Q ss_pred             HHHHHHHHhc-CCCh
Q 045377          233 MEILILLSGL-LPNP  246 (256)
Q Consensus       233 ~~~~~~~~~~-~g~~  246 (256)
                      -.+.+.+.+| +|..
T Consensus       255 rplVnl~vsR~l~gs  269 (345)
T PF07260_consen  255 RPLVNLFVSRDLSGS  269 (345)
T ss_pred             HHHHHHHHhhccCCc
Confidence            9999999999 5544

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=98.73  E-value=2.7e-06  Score=75.21  Aligned_cols=190  Identities=13%  Similarity=0.040  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHHHHHHhc--C-ChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCccc---------chHHHH
Q 045377            4 VSVLQYLLQVVSTVMVGH--L-SQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQF---------RKLGVH   71 (256)
Q Consensus         4 ~~~~~~~~~~~~~~~i~~--~-g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~---------~~~~~~   71 (256)
                      ..+.-.+.+--|+..+..  + +.++.|.|++++++-+++.-.+...+--+.-...++...+++.         ++..+.
T Consensus       265 Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~~~~~~~~~~~~~  344 (549)
T PF04506_consen  265 QSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKKQPQESLKQAANV  344 (549)
T ss_pred             HHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhhccchhHHHHHHH
Confidence            345556666678888887  5 7789999999999999987888888888888888887765433         335556


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCch---hHHHHHH
Q 045377           72 TYTAIISLILVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLI---LPMFASS  147 (256)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~---~~~~~~~  147 (256)
                      ....+++...+++..... -..++.++.++.+++=....+...++..+.+.|+.+++++...+.++..+.   +......
T Consensus       345 l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m  424 (549)
T PF04506_consen  345 LSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWM  424 (549)
T ss_pred             HHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHH
Confidence            666777777777666655 777777888776543223345788999999999999999999999976543   3333444


Q ss_pred             HHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377          148 FLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYS  194 (256)
Q Consensus       148 i~~~~~~i~~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~  194 (256)
                      ....++.+..++++..+ ++|..|..+|+.+...+......++.++.
T Consensus       425 ~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~  470 (549)
T PF04506_consen  425 VVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY  470 (549)
T ss_pred             HHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566777888998865 79999999999999999999998888765

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.35  E-value=0.00014  Score=61.42  Aligned_cols=171  Identities=9%  Similarity=-0.022  Sum_probs=126.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 045377           23 SQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGV---HTYTAIISLILVCPLVCLL-WIFMDKLLP   98 (256)
Q Consensus        23 g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~l~~   98 (256)
                      +-++.|.|...+++-++..-.+...+--......+|...+++.|+.++   +..+.++....+++..... ...+++.+.
T Consensus       273 s~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~  352 (530)
T KOG2864|consen  273 SFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLL  352 (530)
T ss_pred             CcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHH
Confidence            445778899998888887677777777777777887776666665555   5556666666677665555 777888888


Q ss_pred             hcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchh---HHHHHHHHHHHHHHHHHHHHHhhcccccchHHHH
Q 045377           99 LIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLIL---PMFASSFLILCFHIPACWTLVFKLELGSMGAALA  175 (256)
Q Consensus        99 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~---~~~~~~i~~~~~~i~~~~~li~~~~~g~~G~~~a  175 (256)
                      ++++++=....+...+++.|.+.|+.+++.+..+++.+.++.+   --.....+..+..++++++++.+  +|..|..+|
T Consensus       353 lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlA  430 (530)
T KOG2864|consen  353 LYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILA  430 (530)
T ss_pred             HHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHH
Confidence            8876543344566889999999999999999999999765422   22233445567778889999955  778999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcc
Q 045377          176 FSLSTWLNVILLGLYMMYSS  195 (256)
Q Consensus       176 ~~i~~~~~~~~~~~~~~~~~  195 (256)
                      +.+...+.-+....++++..
T Consensus       431 NiiNm~lRIlys~~fI~~~y  450 (530)
T KOG2864|consen  431 NIINMSLRILYSLRFIRHYY  450 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99988888888877776643

>COG4267 Predicted membrane protein [Function unknown]

Probab=92.34  E-value=6.3  Score=33.48  Aligned_cols=138  Identities=12%  Similarity=0.165  Sum_probs=91.9

Q ss_pred             HHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHH
Q 045377           42 FSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPAL  121 (256)
Q Consensus        42 ~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~  121 (256)
                      ..+..|++...+..+|.+.=+||+++....+.-+.......+...+..       +-...++..     ..|=...+...
T Consensus        74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~s-----i~yk~l~~~~F  141 (467)
T COG4267          74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYS-----IVYKILACALF  141 (467)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchh-----HHHHHHHHHHH
Confidence            456777888888888888877888777776655554444443333321       111122221     11212334444


Q ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377          122 FGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYS  194 (256)
Q Consensus       122 ~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~  194 (256)
                      ......=....++.+.+|.+....+-.++.++.+.+...+-   +.+..|..++..++..+.......+..+.
T Consensus       142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~  211 (467)
T COG4267         142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRY  211 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            45555555567777888888888888899998888877765   56899999999999999988888777654

>COG4267 Predicted membrane protein [Function unknown]

Probab=84.13  E-value=26  Score=30.00  Aligned_cols=109  Identities=16%  Similarity=0.113  Sum_probs=63.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---hcCchh
Q 045377           66 RKLGVHTYTAIISLILVCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQ---TQSLIL  141 (256)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~---~~g~~~  141 (256)
                      ++.....++.+.-..-.-..+++. .++++.+..+++-++       .++++.-.......++..+.+.++   =.++.+
T Consensus       320 ~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~-------~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~  392 (467)
T COG4267         320 KKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE-------YYLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRR  392 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            333344455554444444555555 888999999987655       333344333344444444444444   346677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-cccccchHHHHHHHHHH
Q 045377          142 PMFASSFLILCFHIPACWTLVFK-LELGSMGAALAFSLSTW  181 (256)
Q Consensus       142 ~~~~~~i~~~~~~i~~~~~li~~-~~~g~~G~~~a~~i~~~  181 (256)
                      ........-.+.|-++.++.... |++--.|...|..++-.
T Consensus       393 i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vl  433 (467)
T COG4267         393 IALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVL  433 (467)
T ss_pred             hhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHH
Confidence            77777777778888888887753 44444555555554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	256
3mkt_A	460	Structure Of A Cation-Bound Multidrug And Toxin Com		8e-04

>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 23/220 (10%)
Query: 18  MVGHLSQLALSSVAIATSL---TNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYT 74
           M G +S + +++V+IA S+   + + G  LL  MA  L  +  Q  GA +  K+    + 
Sbjct: 38  MAGGVSAIDMAAVSIAASIWLPSILFGVGLL--MA--LVPVVAQLNGAGRQHKIPFEVHQ 93
Query: 75  AII-SLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRY 133
            +I +L++  P++ +L+     ++  +  +  ++ +   Y   +I A+    + + L  +
Sbjct: 94  GLILALLVSVPIIAVLFQ-TQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSF 152
Query: 134 FQTQSLILPMFASSFLILCFHIPACWTLVFKL----ELGSMGAALAFSLSTWLNVILLGL 189
               SL  P     F+ L  +IP  W  V+      ELG +G  +A ++  W+ ++LL  
Sbjct: 153 TDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLF 212
Query: 190 YMMYS------SACEKTRAPVSKESLLAIGQFFRLAIPSA 223
           Y++ S         E    P  KE +    + FRL  P A
Sbjct: 213 YIVTSKRLAHVKVFETFHKPQPKELI----RLFRLGFPVA 248

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	256
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	1e-42

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score =  149 bits (379), Expect = 1e-42
 Identities = 53/254 (20%), Positives = 106/254 (41%), Gaps = 7/254 (2%)

Query: 1   MVAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAY 60
           ++  SV Q  +  V T+M G +S + +++V+IA S+          G+   L  +  Q  
Sbjct: 21  VLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWL-PSILFGVGLLMALVPVVAQLN 79

Query: 61  GAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPA 120
           GA +  K+    +  +I  +LV   +  +      ++  +  +  ++ +   Y   +I A
Sbjct: 80  GAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFA 139

Query: 121 LFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKL----ELGSMGAALAF 176
           +    + + L  +    SL  P     F+ L  +IP  W  V+      ELG +G  +A 
Sbjct: 140 VPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVAT 199

Query: 177 SLSTWLNVILLGLYMMYSSACEKTR--APVSKESLLAIGQFFRLAIPSAIMVCLKWWSME 234
           ++  W+ ++LL  Y++ S      +      K     + + FRL  P A  +  +     
Sbjct: 200 AIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFA 259

Query: 235 ILILLSGLLPNPKL 248
           ++ LL   L +  +
Sbjct: 260 VVALLVAPLGSTVV 273

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.97
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.91

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.97  E-value=1.5e-29  Score=218.50  Aligned_cols=251  Identities=21%  Similarity=0.320  Sum_probs=225.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL   81 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~   81 (256)
                      +++++...+++.+|+.+++++|++++|+++.+.++.... ..+..|++.+..|.++|++|++|+|+.++..+++..+..+
T Consensus        22 ~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~  100 (460)
T 3mkt_A           22 LIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALL  100 (460)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999998887 8889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 045377           82 VCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTL  161 (256)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~~~~i~~~~~l  161 (256)
                      .+++.+++..+.+++..+++.|++..+.+..|+++++++.++..+.....+.+|+.||++.+.+.++++.++|+++++++
T Consensus       101 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~l  180 (460)
T 3mkt_A          101 VSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIF  180 (460)
T ss_dssp             HHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99887766788899999998899999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhh----cccccchHHHHHHHHHHHHHHHHHHHHHhccccccc--CCCCCHHHHHhHHHHHHHHhHHHHHHHHHHHHHHH
Q 045377          162 VFK----LELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKT--RAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEI  235 (256)
Q Consensus       162 i~~----~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  235 (256)
                      ++.    |++|+.|+++++.+++.+..+...++.+|+++.++.  ++++.+.+++..|++++.++|..++...++..+.+
T Consensus       181 i~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~  260 (460)
T 3mkt_A          181 VYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAV  260 (460)
T ss_dssp             HSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            975    479999999999999999999988888776443221  12222344577899999999999999999999999


Q ss_pred             HHHHHhcCCChhhhhhhh
Q 045377          236 LILLSGLLPNPKLETSVL  253 (256)
Q Consensus       236 ~~~~~~~~g~~~~a~~~~  253 (256)
                      ++.+++++|++++++..+
T Consensus       261 ~~~~~~~~g~~~va~~~i  278 (460)
T 3mkt_A          261 VALLVAPLGSTVVAAHQV  278 (460)
T ss_dssp             HHHHTCTTSSHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHH
Confidence            999999999998876543

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.91  E-value=8.2e-23  Score=176.24  Aligned_cols=192  Identities=14%  Similarity=0.245  Sum_probs=179.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhhCCcccchHHHHHHHHHHHHHH
Q 045377            2 VAVSVLQYLLQVVSTVMVGHLSQLALSSVAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLIL   81 (256)
Q Consensus         2 ~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~i~~~~~~~~~~~l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~   81 (256)
                      .++++...+...+|+.+++++|++++|+|+.+.++.++. ..+..+++++..|.+++++|+||+|+.++..+++......
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~  326 (460)
T 3mkt_A          248 AAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLA  326 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            467788899999999999999999999999999999998 8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH-HHHHHHHH
Q 045377           82 VCPLVCLL-WIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLIL-CFHIPACW  159 (256)
Q Consensus        82 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~i~~~-~~~i~~~~  159 (256)
                      ++++.+++ ..+++++..++.+|+++.+.+.+++++++++.++.+++.+..+.+++.||++.+++.++.+. ++++++++
T Consensus       327 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~  406 (460)
T 3mkt_A          327 TACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGY  406 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999887 89999999999888888999999999999999999999999999999999999999999988 99999999


Q ss_pred             HHHhh----cc-cccchHHHHHHHHHHHHHHHHHHHHHhc
Q 045377          160 TLVFK----LE-LGSMGAALAFSLSTWLNVILLGLYMMYS  194 (256)
Q Consensus       160 ~li~~----~~-~g~~G~~~a~~i~~~~~~~~~~~~~~~~  194 (256)
                      ++...    ++ +|..|+|+++.+++.+..++..+..+|+
T Consensus       407 ~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          407 ILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred             HHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99965    55 9999999999999999998887666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00