Citrus Sinensis ID: 045385

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECPISSSDSSN
Secondary Structure (PSIPRED)
cccccccccEEEEEcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHcccEEEEcccccccccccccccHHHEEEcccccEEEEEEEccEEEEccccccccEEccHHHHHHHHHHHHHccEEEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHcccccccHHHHcccccccccccccccHHHHHHHHHHcccEEEEcccccHHHHccccHHcEEEEEEccccEEEEEEEccEEEEccccccccccccHHHHHHHHHHHHHcccEEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
megasnggmlyHEVQESKLCAVHCVNtvlqgpffsefDLAALASDLDRSERQVMLegrvpaassgdflteeshnvsldgdFSIQVLQKALEVWdlqviplncpiaepaqidpeLENAFICHLHDHWFCIrkvngewynfdslyaapeHLSKFYLSAYLDSLKGFGWSIFIVrgnfpkecpisssdssn
Flexible Loop (DISEMBL)
megasnggMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPkecpisssdssn
Low Complexity Region (SEG)
MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECPISSSDSSN
Disordered region (IsUnstruct)
*********LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASD****************************NVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP************
Disordered Region (DISOPRED)
***********HEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRS*****************FLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC*********
Disordered Region (DISEMBL)
********MLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC*********
Disordered Region (DISPRO)
******GGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECP********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECPISSSDSSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
Q9M391	280	Ataxin-3 homolog OS=Arabi	yes	no	0.962	0.646	0.862	3e-90
Q8LQ36	336	Putative ataxin-3 homolog	yes	no	0.978	0.547	0.760	6e-78
P54252	364	Ataxin-3 OS=Homo sapiens	yes	no	0.888	0.458	0.437	5e-38
Q9CVD2	355	Ataxin-3 OS=Mus musculus	yes	no	0.888	0.470	0.437	7e-38
O35815	355	Ataxin-3 OS=Rattus norveg	yes	no	0.888	0.470	0.437	7e-38
Q9W689	363	Ataxin-3 OS=Gallus gallus	yes	no	0.888	0.460	0.437	1e-37
Q9H3M9	355	Putative ataxin-3-like pr	no	no	0.888	0.470	0.431	9e-35
O17850	317	Ataxin-3 homolog OS=Caeno	yes	no	0.851	0.504	0.339	2e-24
Q60XN1	319	Ataxin-3 homolog OS=Caeno	N/A	no	0.845	0.498	0.323	3e-22
O82391	360	Josephin-like protein OS=	no	no	0.675	0.352	0.257	9e-07

>sp|Q9M391|ATX3H_ARATH Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54130 PE=2 SV=1

 Score =  330 bits (846), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 157/182 (86%), Positives = 166/182 (91%), Gaps = 1/182 (0%)

Query: 1   MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGR-V 59
           ME  SNGGMLYHEVQES LCAVHCVNTVLQGPFFSEFDLAA+A+DLD  ERQVMLEG  V
Sbjct: 1   MERTSNGGMLYHEVQESNLCAVHCVNTVLQGPFFSEFDLAAVAADLDGKERQVMLEGAAV 60

Query: 60  PAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFI 119
              + GDFL EESHNVSL GDFSIQVLQKALEVWDLQVIPLNCP AEPAQIDPELE+AFI
Sbjct: 61  GGFAPGDFLAEESHNVSLGGDFSIQVLQKALEVWDLQVIPLNCPDAEPAQIDPELESAFI 120

Query: 120 CHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC 179
           CHLHDHWFCIRKVNGEWYNFDSL AAP+HLSKFYLSA+LDSLKG GWSIFIV+GNFP+EC
Sbjct: 121 CHLHDHWFCIRKVNGEWYNFDSLLAAPQHLSKFYLSAFLDSLKGAGWSIFIVKGNFPQEC 180

Query: 180 PI 181
           P+
Sbjct: 181 PM 182

Interacts with key regulators of transcription and represses transcription. Acts as a histone-binding protein that regulates transcription. Acts as a deubiquitinating enzyme.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q8LQ36|ATX3_ORYSJ Putative ataxin-3 homolog OS=Oryza sativa subsp. japonica GN=Os01g0851400 PE=3 SV=1

 Score =  289 bits (740), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 143/188 (76%), Positives = 157/188 (83%), Gaps = 4/188 (2%)

Query: 4   ASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAAS 63
           ASNGG+LYHEVQE KLCAVHCVNT LQGPFFSEFDL+ALA DLD+ ERQVM EG   AA+
Sbjct: 7   ASNGGLLYHEVQEGKLCAVHCVNTTLQGPFFSEFDLSALAVDLDQRERQVMSEGAAGAAT 66

Query: 64  SG--DFLTEE--SHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFI 119
           +   DFL E   SHNVSL GDFSIQVLQKALEVWDLQVIPL+ P       DPELE AFI
Sbjct: 67  TAAGDFLAEGEGSHNVSLGGDFSIQVLQKALEVWDLQVIPLDSPDVGSCLFDPELETAFI 126

Query: 120 CHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC 179
           CHL DHWFCIRKVNGEWYNF+SLY APEHLSKFYLSA++D+LKG GWSIF VRGNFPKEC
Sbjct: 127 CHLQDHWFCIRKVNGEWYNFNSLYPAPEHLSKFYLSAFIDTLKGSGWSIFAVRGNFPKEC 186

Query: 180 PISSSDSS 187
           P+++  S+
Sbjct: 187 PMATEGSN 194

Interacts with key regulators of transcription and represses transcription. Acts as a histone-binding protein that regulates transcription. Acts as a deubiquitinating enzyme.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P54252|ATX3_HUMAN Ataxin-3 OS=Homo sapiens GN=ATXN3 PE=1 SV=4

 Score =  157 bits (396), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 107/167 (64%)

Query: 10  LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
           ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL 
Sbjct: 4   IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQ 63

Query: 70  EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
           + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +
Sbjct: 64  QPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTV 123

Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
           RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P
Sbjct: 124 RKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP 170

Deubiquitinating enzyme involved in protein homeostasis maintenance, transcription, cytoskeleton regulation, myogenesis and degradation of misfolded chaperone substrates. Binds long polyubiquitin chains and trims them, while it has weak or no activity against chains of 4 or less ubiquitins. Involved in degradation of misfolded chaperone substrates via its interaction with STUB1/CHIP: recruited to monoubiquitinated STUB1/CHIP, and restricts the length of ubiquitin chain attached to STUB1/CHIP substrates and preventing further chain extension. In response to misfolded substrate ubiquitination, mediates deubiquitination of monoubiquitinated STUB1/CHIP. Interacts with key regulators of transcription and represses transcription: acts as a histone-binding protein that regulates transcription.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9CVD2|ATX3_MOUSE Ataxin-3 OS=Mus musculus GN=Atxn3 PE=1 SV=2

 Score =  156 bits (395), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 107/167 (64%)

Query: 10  LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
           ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL 
Sbjct: 4   IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQ 63

Query: 70  EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
           + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +
Sbjct: 64  QPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTV 123

Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
           RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P
Sbjct: 124 RKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP 170

Deubiquitinating enzyme involved in protein homeostasis maintenance, transcription, cytoskeleton regulation, myogenesis and degradation of misfolded chaperone substrates. Binds long polyubiquitin chains and trims them, while it has weak or no activity against chains of 4 or less ubiquitins. Involved in degradation of misfolded chaperone substrates via its interaction with STUB1/CHIP: recruited to monoubiquitinated STUB1/CHIP, and restricts the length of ubiquitin chain attached to STUB1/CHIP substrates and preventing further chain extension. In response to misfolded substrate ubiquitination, mediates deubiquitination of monoubiquitinated STUB1/CHIP. Interacts with key regulators of transcription and represses transcription: acts as a histone-binding protein that regulates transcription.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|O35815|ATX3_RAT Ataxin-3 OS=Rattus norvegicus GN=Atxn3 PE=1 SV=1

 Score =  156 bits (395), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 107/167 (64%)

Query: 10  LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
           ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL 
Sbjct: 4   IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQ 63

Query: 70  EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
           + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +
Sbjct: 64  QPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTV 123

Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
           RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P
Sbjct: 124 RKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP 170

Deubiquitinating enzyme involved in protein homeostasis maintenance, transcription, cytoskeleton regulation, myogenesis and degradation of misfolded chaperone substrates. Binds long polyubiquitin chains and trims them, while it has weak or no activity against chains of 4 or less ubiquitins. Involved in degradation of misfolded chaperone substrates via its interaction with STUB1/CHIP: recruited to monoubiquitinated STUB1/CHIP, and restricts the length of ubiquitin chain attached to STUB1/CHIP substrates and preventing further chain extension. In response to misfolded substrate ubiquitination, mediates deubiquitination of monoubiquitinated STUB1/CHIP. Interacts with key regulators of transcription and represses transcription: acts as a histone-binding protein that regulates transcription.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9W689|ATX3_CHICK Ataxin-3 OS=Gallus gallus GN=ATXN3 PE=2 SV=1

 Score =  155 bits (392), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 106/167 (63%)

Query: 10  LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
           ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL 
Sbjct: 4   IFHERQEGSLCAQHCLNNLLQGEYFSPVELSSIAQQLDEEERMRMAEGGVSSEEYRTFLQ 63

Query: 70  EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
           + S N+   G FSIQV+  AL+VW L++I  N P  +   IDP  E +FIC+  +HWF +
Sbjct: 64  QPSVNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLGIDPINEKSFICNYKEHWFTV 123

Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
           RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P
Sbjct: 124 RKLGKQWFNLNSLLMGPELISDTYLALFLAQLQQEGYSIFVVKGDLP 170

Deubiquitinating enzyme involved in protein homeostasis maintenance, transcription, cytoskeleton regulation, myogenesis and degradation of misfolded chaperone substrates. Binds long polyubiquitin chains and trims them, while it has weak or no activity against chains of 4 or less ubiquitins. Interacts with key regulators of transcription and represses transcription: acts as a histone-binding protein that regulates transcription.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9H3M9|ATX3L_HUMAN Putative ataxin-3-like protein OS=Homo sapiens GN=ATXN3L PE=5 SV=2

 Score =  146 bits (368), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 101/167 (60%)

Query: 10  LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
           ++HE QE  LCA HC+N +LQG +FS  +LA++A  LD  ER  M EG V +     FL 
Sbjct: 4   IFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFLQ 63

Query: 70  EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
           + S N+   G FSIQV+  AL+ W L++I  N P  +   IDP  E +FIC+   HWF I
Sbjct: 64  QPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHWFTI 123

Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
           RK    W+N +SL A PE +S   L+ +L  L+   +S+F+V+G+ P
Sbjct: 124 RKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLP 170

Deubiquitinating enzyme that cleaves both 'Lys-48'-linked and 'Lys-63'-linked poly-ubiquitin chains (in vitro).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|O17850|ATX3_CAEEL Ataxin-3 homolog OS=Caenorhabditis elegans GN=atx-3 PE=1 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 95/168 (56%), Gaps = 8/168 (4%)

Query: 10  LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
           ++ E QE+ LCA H +N +LQ   +   DL  LA  +D+ E+Q++         + +   
Sbjct: 10  IFFEHQEAALCAQHALNMLLQDALYKWQDLRDLAIQMDKMEQQIL--------GNANPTP 61

Query: 70  EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
             S N++  G FSIQVL+KALE + L++  +  P     + +P    A+IC+L +HWF +
Sbjct: 62  GRSENMNESGYFSIQVLEKALETFSLKLTNIENPAMVDYKNNPLTARAYICNLREHWFVL 121

Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPK 177
           RK   +W+  +S+   P+ LS  Y+S +L  +   G+SIF+V+G  P+
Sbjct: 122 RKFGNQWFELNSVNRGPKLLSDTYVSMFLHQVSSEGYSIFVVQGVLPR 169

Interacts with key regulators of transcription and represses transcription. Acts as a histone-binding protein that regulates transcription. Acts as a deubiquitinating enzyme.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q60XN1|ATX3_CAEBR Ataxin-3 homolog OS=Caenorhabditis briggsae GN=atx-3 PE=3 SV=1

 Score =  104 bits (260), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 8/167 (4%)

Query: 10  LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
           ++ E Q++ LCA H +N +LQ   F+  +L  LA  +D+ E  ++      A + G    
Sbjct: 11  IFFERQQAALCAQHALNMLLQDSLFTYENLRDLARQMDQMEHDILGNN---ANAVG---- 63

Query: 70  EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
             S N++  G FSIQV++KALE +DL++I +  P     + +P    A++ +L +HWF +
Sbjct: 64  -RSENMNDSGFFSIQVIEKALETFDLKLINMENPAMAEFKANPLTARAYVLNLREHWFVL 122

Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
           RK   +W+  +S+   P+ L+  Y+  YL       +SIF+V+G  P
Sbjct: 123 RKFGNQWFELNSVKNGPKLLTDTYVKEYLHQFAAENYSIFVVQGILP 169

Interacts with key regulators of transcription and represses transcription. Acts as a histone-binding protein that regulates transcription. Acts as a deubiquitinating enzyme.

Caenorhabditis briggsae (taxid: 6238)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|O82391|JOSL_ARATH Josephin-like protein OS=Arabidopsis thaliana GN=At2g29640 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 40/167 (23%)

Query: 4   ASNGGMLYHEVQESKLCAVHCVNTVLQGP-FFSEFDLAALASDLDRSERQVMLEGRVPAA 62
           A +   +YHE Q  + C +HC+N + Q    F++  L ++A  L+ ++     E   P +
Sbjct: 2   ADSESKIYHERQRLQFCLLHCLNNLFQDKDAFTKESLNSIAEKLETNDPNK--ETWTPLS 59

Query: 63  SSGDFLTEESHNVSLDGDFSIQVLQKALE------VW----------------DLQVIPL 100
               F+ +  HN ++ G++ + V+  ALE      VW                 L  I L
Sbjct: 60  ----FVLKPHHN-TITGNYDVNVMITALEGKGKSVVWHDKRIGASSIDLDDADTLMGIVL 114

Query: 101 NCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPE 147
           N P+     +              HW  +RK+NG WYN DS    P+
Sbjct: 115 NVPVKRYGGL----------WRSRHWVVVRKINGVWYNLDSDLVVPQ 151

May act as a deubiquitinating enzyme.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
449439932	426	PREDICTED: ataxin-3 homolog [Cucumis sat	0.978	0.431	0.882	2e-96
388500356	345	unknown [Lotus japonicus]	0.984	0.536	0.872	1e-94
356496152	338	PREDICTED: ataxin-3 homolog [Glycine max	0.962	0.535	0.893	6e-94
356504297	336	PREDICTED: ataxin-3 homolog [Glycine max	0.957	0.535	0.893	6e-93
224140363	280	predicted protein [Populus trichocarpa]	1.0	0.671	0.851	2e-91
255573895	266	Ataxin-3, putative [Ricinus communis] gi	0.984	0.695	0.856	3e-91
15232434	280	Ataxin-3 like protein [Arabidopsis thali	0.962	0.646	0.862	2e-88
147823359	445	hypothetical protein VITISV_014341 [Viti	0.984	0.415	0.824	2e-88
357468589	330	Ataxin-3-like protein [Medicago truncatu	0.941	0.536	0.864	3e-88
225440596	272	PREDICTED: ataxin-3 homolog [Vitis vinif	0.984	0.680	0.824	4e-88

>gi|449439932|ref|XP_004137739.1| PREDICTED: ataxin-3 homolog [Cucumis sativus] gi|449483438|ref|XP_004156591.1| PREDICTED: ataxin-3 homolog [Cucumis sativus]

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 166/188 (88%), Positives = 178/188 (94%), Gaps = 4/188 (2%)

Query: 1   MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVP 60
           M+GA NGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDR ERQ+ML G   
Sbjct: 1   MDGACNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRKERQMMLSG--- 57

Query: 61  AASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFIC 120
            +++GDFL+EESHNVSLDGDFSIQVLQKALEVWDLQVIPLN P+AEPAQIDP+LENAFIC
Sbjct: 58  -STTGDFLSEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNSPVAEPAQIDPQLENAFIC 116

Query: 121 HLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECP 180
           HL DHWFCIRKVNGEWYNFDSLYAAP+HLSKFYLSAYLDSLKGFGWSIFIVRGNFPK+ P
Sbjct: 117 HLQDHWFCIRKVNGEWYNFDSLYAAPQHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKDFP 176

Query: 181 ISSSDSSN 188
           ISSS++SN
Sbjct: 177 ISSSEASN 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500356|gb|AFK38244.1| unknown [Lotus japonicus]

 Score =  350 bits (899), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 164/188 (87%), Positives = 178/188 (94%), Gaps = 3/188 (1%)

Query: 1   MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVP 60
           MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLD  ERQ+M+   +P
Sbjct: 3   MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDCKERQMMM---LP 59

Query: 61  AASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFIC 120
           + +SGDFL+ +SHNVSLDGDFSIQVLQKALEVWDLQVIPL+ P+AEPAQIDPELENAFIC
Sbjct: 60  SLASGDFLSHDSHNVSLDGDFSIQVLQKALEVWDLQVIPLDSPVAEPAQIDPELENAFIC 119

Query: 121 HLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECP 180
           HL DHWFCIRKVNGEWYNFDSLYAAP+HLSKFYL+AYLDSLKGFGWSIF+VRGNFPKE P
Sbjct: 120 HLQDHWFCIRKVNGEWYNFDSLYAAPQHLSKFYLAAYLDSLKGFGWSIFLVRGNFPKEFP 179

Query: 181 ISSSDSSN 188
           ISSS++SN
Sbjct: 180 ISSSEASN 187

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496152|ref|XP_003516934.1| PREDICTED: ataxin-3 homolog [Glycine max]

 Score =  348 bits (893), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 168/188 (89%), Positives = 175/188 (93%), Gaps = 7/188 (3%)

Query: 1   MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVP 60
           MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDR ERQVML    P
Sbjct: 2   MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRKERQVML----P 57

Query: 61  AASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFIC 120
           A +S DF   ESHNVSLDGDFSIQVLQKALEVWDLQVIPL+ P+AEPAQIDPELENAFIC
Sbjct: 58  ALASADF---ESHNVSLDGDFSIQVLQKALEVWDLQVIPLDSPVAEPAQIDPELENAFIC 114

Query: 121 HLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECP 180
           HL DHWFCIRKVNGEWYNFDSLYAAP+HLSKFYLSAYLDSLKGFGWSIF+VRGNFPKE P
Sbjct: 115 HLQDHWFCIRKVNGEWYNFDSLYAAPQHLSKFYLSAYLDSLKGFGWSIFLVRGNFPKEFP 174

Query: 181 ISSSDSSN 188
           ISSS++SN
Sbjct: 175 ISSSEASN 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504297|ref|XP_003520933.1| PREDICTED: ataxin-3 homolog [Glycine max]

 Score =  345 bits (884), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 167/187 (89%), Positives = 173/187 (92%), Gaps = 7/187 (3%)

Query: 2   EGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPA 61
           EGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDR ERQVML    PA
Sbjct: 4   EGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRKERQVML----PA 59

Query: 62  ASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICH 121
            SS DF   ESHNVSLDGDFSIQVLQKALEVWDLQVIPL+ P+AEPAQIDPELENAFICH
Sbjct: 60  LSSADF---ESHNVSLDGDFSIQVLQKALEVWDLQVIPLDSPVAEPAQIDPELENAFICH 116

Query: 122 LHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECPI 181
           L DHWFCIRKVN EWYNFDSLYAAP+HLSKFYLSAYLDSLKGFGWSIF+VRGNFPKE PI
Sbjct: 117 LQDHWFCIRKVNREWYNFDSLYAAPQHLSKFYLSAYLDSLKGFGWSIFLVRGNFPKEFPI 176

Query: 182 SSSDSSN 188
           SSS++SN
Sbjct: 177 SSSEASN 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140363|ref|XP_002323552.1| predicted protein [Populus trichocarpa] gi|222868182|gb|EEF05313.1| predicted protein [Populus trichocarpa]

 Score =  339 bits (870), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 160/188 (85%), Positives = 173/188 (92%)

Query: 1   MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVP 60
           MEG SNGGMLYHEVQE+KLCAVHCVNTVLQGPFFSEFDLAALASDLD  ERQ+M EG V 
Sbjct: 1   MEGESNGGMLYHEVQEAKLCAVHCVNTVLQGPFFSEFDLAALASDLDTKERQMMQEGTVS 60

Query: 61  AASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFIC 120
           AA+SGDFL+ ESHNVSL GDFSIQVLQKALEVWDLQVI  + P+AE AQIDP+LENAFIC
Sbjct: 61  AAASGDFLSAESHNVSLGGDFSIQVLQKALEVWDLQVIASDSPVAEHAQIDPDLENAFIC 120

Query: 121 HLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECP 180
           HLHDHWFCIRKVNGEWYNFDSLYAAP+HLSKFYL+AYLDSLK  GWSIF+VRGNFPKE P
Sbjct: 121 HLHDHWFCIRKVNGEWYNFDSLYAAPQHLSKFYLAAYLDSLKNSGWSIFLVRGNFPKEFP 180

Query: 181 ISSSDSSN 188
           I+SS++SN
Sbjct: 181 IASSEASN 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573895|ref|XP_002527866.1| Ataxin-3, putative [Ricinus communis] gi|223532717|gb|EEF34497.1| Ataxin-3, putative [Ricinus communis]

 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 161/188 (85%), Positives = 174/188 (92%), Gaps = 3/188 (1%)

Query: 1   MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVP 60
           MEG SNGGMLYHEVQE+KLCAVHCVNTVLQGPFFSEFDLAALASDLD  ERQ+M  G   
Sbjct: 1   MEGVSNGGMLYHEVQEAKLCAVHCVNTVLQGPFFSEFDLAALASDLDCKERQMMQMG--- 57

Query: 61  AASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFIC 120
            +S+GDFL+ ESHNVSLDGDFSIQVL+KALEVWDLQVIPLN P+AEPAQIDP+LENAFIC
Sbjct: 58  GSSTGDFLSVESHNVSLDGDFSIQVLEKALEVWDLQVIPLNSPVAEPAQIDPDLENAFIC 117

Query: 121 HLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECP 180
           HLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYL+AYLDSLK  GWSIF+VRGNFPKE P
Sbjct: 118 HLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLAAYLDSLKSSGWSIFLVRGNFPKEFP 177

Query: 181 ISSSDSSN 188
           I+SS++SN
Sbjct: 178 IASSEASN 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232434|ref|NP_190981.1| Ataxin-3 like protein [Arabidopsis thaliana] gi|29336976|sp|Q9M391.1|ATX3H_ARATH RecName: Full=Ataxin-3 homolog; AltName: Full=MJD1a-like; AltName: Full=Machado-Joseph disease-like protein gi|6822059|emb|CAB70987.1| Machado-Joseph disease MJD1a-like protein [Arabidopsis thaliana] gi|38564306|gb|AAR23732.1| At3g54130 [Arabidopsis thaliana] gi|38604054|gb|AAR24770.1| At3g54130 [Arabidopsis thaliana] gi|332645670|gb|AEE79191.1| Ataxin-3 like protein [Arabidopsis thaliana]

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 157/182 (86%), Positives = 166/182 (91%), Gaps = 1/182 (0%)

Query: 1   MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGR-V 59
           ME  SNGGMLYHEVQES LCAVHCVNTVLQGPFFSEFDLAA+A+DLD  ERQVMLEG  V
Sbjct: 1   MERTSNGGMLYHEVQESNLCAVHCVNTVLQGPFFSEFDLAAVAADLDGKERQVMLEGAAV 60

Query: 60  PAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFI 119
              + GDFL EESHNVSL GDFSIQVLQKALEVWDLQVIPLNCP AEPAQIDPELE+AFI
Sbjct: 61  GGFAPGDFLAEESHNVSLGGDFSIQVLQKALEVWDLQVIPLNCPDAEPAQIDPELESAFI 120

Query: 120 CHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC 179
           CHLHDHWFCIRKVNGEWYNFDSL AAP+HLSKFYLSA+LDSLKG GWSIFIV+GNFP+EC
Sbjct: 121 CHLHDHWFCIRKVNGEWYNFDSLLAAPQHLSKFYLSAFLDSLKGAGWSIFIVKGNFPQEC 180

Query: 180 PI 181
           P+
Sbjct: 181 PM 182

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147823359|emb|CAN64200.1| hypothetical protein VITISV_014341 [Vitis vinifera]

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 155/188 (82%), Positives = 172/188 (91%), Gaps = 3/188 (1%)

Query: 1   MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVP 60
           MEG SNGGMLYHEVQESKLCAVHCVNTVLQGPFF+E DLAALASDLD  ER++ML+   P
Sbjct: 1   MEGPSNGGMLYHEVQESKLCAVHCVNTVLQGPFFTEIDLAALASDLDLEERRMMLQ---P 57

Query: 61  AASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFIC 120
           +A S +FL+E+SHNVS+DGDFSIQVLQKALEVWDLQVIPL+CP+AEPAQIDPELENAFIC
Sbjct: 58  SAPSAEFLSEDSHNVSMDGDFSIQVLQKALEVWDLQVIPLDCPVAEPAQIDPELENAFIC 117

Query: 121 HLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECP 180
           +L +HWFCIRKV GEWYNFDSL AAPEHLSKFYLSAYLD+LK   WSIF+VRGNFPKECP
Sbjct: 118 NLQNHWFCIRKVGGEWYNFDSLIAAPEHLSKFYLSAYLDTLKSSNWSIFLVRGNFPKECP 177

Query: 181 ISSSDSSN 188
           ISS ++SN
Sbjct: 178 ISSFEASN 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468589|ref|XP_003604579.1| Ataxin-3-like protein [Medicago truncatula] gi|355505634|gb|AES86776.1| Ataxin-3-like protein [Medicago truncatula]

 Score =  329 bits (843), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 160/185 (86%), Positives = 168/185 (90%), Gaps = 8/185 (4%)

Query: 1   MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVP 60
           MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLD  ERQ+M+   +P
Sbjct: 2   MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDCKERQMMM---MP 58

Query: 61  AASS--GDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAF 118
           A SS  GD     SHNVSLDGDFSIQVLQKALEVWDLQVIPL+ P+AEPAQIDPELENAF
Sbjct: 59  AHSSAAGDLF---SHNVSLDGDFSIQVLQKALEVWDLQVIPLDSPVAEPAQIDPELENAF 115

Query: 119 ICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKE 178
           ICHL DHWFCIRKVNGEWYNFDSLYAAP+HLSKFYL+AYLDSLKGFGWSIF+VRGNFP E
Sbjct: 116 ICHLQDHWFCIRKVNGEWYNFDSLYAAPQHLSKFYLAAYLDSLKGFGWSIFLVRGNFPTE 175

Query: 179 CPISS 183
            PISS
Sbjct: 176 FPISS 180

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440596|ref|XP_002277594.1| PREDICTED: ataxin-3 homolog [Vitis vinifera] gi|297740255|emb|CBI30437.3| unnamed protein product [Vitis vinifera]

 Score =  329 bits (843), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 155/188 (82%), Positives = 172/188 (91%), Gaps = 3/188 (1%)

Query: 1   MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVP 60
           MEG SNGGMLYHEVQESKLCAVHCVNTVLQGPFF+E DLAALASDLD  ER++ML+   P
Sbjct: 1   MEGPSNGGMLYHEVQESKLCAVHCVNTVLQGPFFTEIDLAALASDLDLEERRMMLQ---P 57

Query: 61  AASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFIC 120
           +A S +FL+E+SHNVS+DGDFSIQVLQKALEVWDLQVIPL+CP+AEPAQIDPELENAFIC
Sbjct: 58  SAPSAEFLSEDSHNVSMDGDFSIQVLQKALEVWDLQVIPLDCPVAEPAQIDPELENAFIC 117

Query: 121 HLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKECP 180
           +L +HWFCIRKV GEWYNFDSL AAPEHLSKFYLSAYLD+LK   WSIF+VRGNFPKECP
Sbjct: 118 NLQNHWFCIRKVGGEWYNFDSLIAAPEHLSKFYLSAYLDTLKSSNWSIFLVRGNFPKECP 177

Query: 181 ISSSDSSN 188
           ISS ++SN
Sbjct: 178 ISSFEASN 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
TAIR|locus:2080330	280	AT3G54130 [Arabidopsis thalian	1.0	0.671	0.852	1.1e-85
UNIPROTKB|E2QUQ9	359	ATXN3 "Uncharacterized protein	0.898	0.470	0.435	2.7e-36
UNIPROTKB|F5H211	370	ATXN3 "Ataxin-3" [Homo sapiens	0.898	0.456	0.435	2.7e-36
UNIPROTKB|P54252	364	ATXN3 "Ataxin-3" [Homo sapiens	0.898	0.464	0.435	2.7e-36
UNIPROTKB|Q06AV3	353	ATXN3 "Uncharacterized protein	0.898	0.478	0.435	2.7e-36
MGI|MGI:1099442	355	Atxn3 "ataxin 3" [Mus musculus	0.898	0.476	0.435	4.4e-36
RGD|621567	355	Atxn3 "ataxin 3" [Rattus norve	0.898	0.476	0.435	4.4e-36
UNIPROTKB|Q9W689	363	ATXN3 "Ataxin-3" [Gallus gallu	0.898	0.465	0.435	9.2e-36
UNIPROTKB|G3V3R7	329	ATXN3 "Ataxin-3" [Homo sapiens	0.893	0.510	0.435	1.9e-35
UNIPROTKB|F1N3H4	369	ATXN3 "Uncharacterized protein	0.898	0.457	0.432	2.4e-35

TAIR|locus:2080330 AT3G54130 [Arabidopsis thaliana (taxid:3702)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 162/190 (85%), Positives = 173/190 (91%)

Query:     1 MEGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGR-V 59
             ME  SNGGMLYHEVQES LCAVHCVNTVLQGPFFSEFDLAA+A+DLD  ERQVMLEG  V
Sbjct:     1 MERTSNGGMLYHEVQESNLCAVHCVNTVLQGPFFSEFDLAAVAADLDGKERQVMLEGAAV 60

Query:    60 PAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFI 119
                + GDFL EESHNVSL GDFSIQVLQKALEVWDLQVIPLNCP AEPAQIDPELE+AFI
Sbjct:    61 GGFAPGDFLAEESHNVSLGGDFSIQVLQKALEVWDLQVIPLNCPDAEPAQIDPELESAFI 120

Query:   120 CHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC 179
             CHLHDHWFCIRKVNGEWYNFDSL AAP+HLSKFYLSA+LDSLKG GWSIFIV+GNFP+EC
Sbjct:   121 CHLHDHWFCIRKVNGEWYNFDSLLAAPQHLSKFYLSAFLDSLKGAGWSIFIVKGNFPQEC 180

Query:   180 PISSS-DSSN 188
             P+SSS ++SN
Sbjct:   181 PMSSSSEASN 190

GO:0005634 "nucleus" evidence=ISM

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0010200 "response to chitin" evidence=RCA

GO:0042732 "D-xylose metabolic process" evidence=RCA

UNIPROTKB|E2QUQ9 ATXN3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 74/170 (43%), Positives = 109/170 (64%)

Query:    10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
             ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL 
Sbjct:     4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQ 63

Query:    70 EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
             + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +
Sbjct:    64 QPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTV 123

Query:   130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC 179
             RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P +C
Sbjct:   124 RKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP-DC 172

GO:0008242 "omega peptidase activity" evidence=IEA

UNIPROTKB|F5H211 ATXN3 "Ataxin-3" [Homo sapiens (taxid:9606)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 74/170 (43%), Positives = 109/170 (64%)

Query:    10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
             ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL 
Sbjct:     4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQ 63

Query:    70 EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
             + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +
Sbjct:    64 QPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTV 123

Query:   130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC 179
             RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P +C
Sbjct:   124 RKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP-DC 172

GO:0008242 "omega peptidase activity" evidence=IEA

UNIPROTKB|P54252 ATXN3 "Ataxin-3" [Homo sapiens (taxid:9606)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 74/170 (43%), Positives = 109/170 (64%)

Query:    10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
             ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL 
Sbjct:     4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQ 63

Query:    70 EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
             + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +
Sbjct:    64 QPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTV 123

Query:   130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC 179
             RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P +C
Sbjct:   124 RKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP-DC 172

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0001012 "RNA polymerase II regulatory region DNA binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IEA

GO:0035640 "exploration behavior" evidence=IEA

GO:0042405 "nuclear inclusion body" evidence=IEA

GO:0070932 "histone H3 deacetylation" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISS

GO:0035520 "monoubiquitinated protein deubiquitination" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0071218 "cellular response to misfolded protein" evidence=ISS

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISS

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0010810 "regulation of cell-substrate adhesion" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0045104 "intermediate filament cytoskeleton organization" evidence=IMP

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0006289 "nucleotide-excision repair" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q06AV3 ATXN3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 74/170 (43%), Positives = 109/170 (64%)

Query:    10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
             ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL 
Sbjct:     4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQ 63

Query:    70 EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
             + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +
Sbjct:    64 QPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTV 123

Query:   130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC 179
             RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P +C
Sbjct:   124 RKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP-DC 172

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0045104 "intermediate filament cytoskeleton organization" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042405 "nuclear inclusion body" evidence=IEA

GO:0035640 "exploration behavior" evidence=IEA

GO:0035520 "monoubiquitinated protein deubiquitination" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0010810 "regulation of cell-substrate adhesion" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

MGI|MGI:1099442 Atxn3 "ataxin 3" [Mus musculus (taxid:10090)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 74/170 (43%), Positives = 109/170 (64%)

Query:    10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
             ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL 
Sbjct:     4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQ 63

Query:    70 EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
             + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +
Sbjct:    64 QPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTV 123

Query:   130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC 179
             RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P +C
Sbjct:   124 RKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP-DC 172

GO:0000226 "microtubule cytoskeleton organization" evidence=ISO

GO:0001012 "RNA polymerase II regulatory region DNA binding" evidence=ISO

GO:0004221 "ubiquitin thiolesterase activity" evidence=IDA

GO:0004407 "histone deacetylase activity" evidence=ISO

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0010810 "regulation of cell-substrate adhesion" evidence=ISO;IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0034605 "cellular response to heat" evidence=IMP

GO:0035520 "monoubiquitinated protein deubiquitination" evidence=IDA

GO:0035640 "exploration behavior" evidence=IMP

GO:0042405 "nuclear inclusion body" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0045104 "intermediate filament cytoskeleton organization" evidence=ISO

GO:0071218 "cellular response to misfolded protein" evidence=IMP

RGD|621567 Atxn3 "ataxin 3" [Rattus norvegicus (taxid:10116)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 74/170 (43%), Positives = 109/170 (64%)

Query:    10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
             ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL 
Sbjct:     4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQ 63

Query:    70 EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
             + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +
Sbjct:    64 QPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTV 123

Query:   130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC 179
             RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P +C
Sbjct:   124 RKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP-DC 172

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA;ISO

GO:0001012 "RNA polymerase II regulatory region DNA binding" evidence=IDA

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISO;ISS

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005759 "mitochondrial matrix" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISO;ISS

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0010810 "regulation of cell-substrate adhesion" evidence=IEA;ISO

GO:0030036 "actin cytoskeleton organization" evidence=IEA;ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO;ISS

GO:0031966 "mitochondrial membrane" evidence=IEA;ISO

GO:0034605 "cellular response to heat" evidence=IEA;ISO

GO:0035520 "monoubiquitinated protein deubiquitination" evidence=ISO;ISS

GO:0035640 "exploration behavior" evidence=IEA;ISO

GO:0042405 "nuclear inclusion body" evidence=IEA;ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0045104 "intermediate filament cytoskeleton organization" evidence=IEA;ISO

GO:0070932 "histone H3 deacetylation" evidence=IEP

GO:0071218 "cellular response to misfolded protein" evidence=ISO;ISS

GO:0004407 "histone deacetylase activity" evidence=IDA

UNIPROTKB|Q9W689 ATXN3 "Ataxin-3" [Gallus gallus (taxid:9031)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 74/170 (43%), Positives = 108/170 (63%)

Query:    10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
             ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL 
Sbjct:     4 IFHERQEGSLCAQHCLNNLLQGEYFSPVELSSIAQQLDEEERMRMAEGGVSSEEYRTFLQ 63

Query:    70 EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
             + S N+   G FSIQV+  AL+VW L++I  N P  +   IDP  E +FIC+  +HWF +
Sbjct:    64 QPSVNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLGIDPINEKSFICNYKEHWFTV 123

Query:   130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC 179
             RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P +C
Sbjct:   124 RKLGKQWFNLNSLLMGPELISDTYLALFLAQLQQEGYSIFVVKGDLP-DC 172

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0010810 "regulation of cell-substrate adhesion" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IEA

GO:0035640 "exploration behavior" evidence=IEA

GO:0042405 "nuclear inclusion body" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=ISS

GO:0035520 "monoubiquitinated protein deubiquitination" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0071218 "cellular response to misfolded protein" evidence=ISS

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISS

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=ISS

UNIPROTKB|G3V3R7 ATXN3 "Ataxin-3" [Homo sapiens (taxid:9606)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 74/170 (43%), Positives = 109/170 (64%)

Query:    10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
             ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL 
Sbjct:     4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFL- 62

Query:    70 EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
             + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +
Sbjct:    63 QPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTV 122

Query:   130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC 179
             RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P +C
Sbjct:   123 RKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP-DC 171

GO:0008242 "omega peptidase activity" evidence=IEA

UNIPROTKB|F1N3H4 ATXN3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 74/171 (43%), Positives = 109/171 (63%)

Query:    10 LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
             ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL 
Sbjct:     4 IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQ 63

Query:    70 EESHNVSLDGDFSIQ-VLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFC 128
             + S N+   G FSIQ V+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF 
Sbjct:    64 QPSGNMDDSGFFSIQQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFT 123

Query:   129 IRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFPKEC 179
             +RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P +C
Sbjct:   124 VRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP-DC 173

GO:0071218 "cellular response to misfolded protein" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042405 "nuclear inclusion body" evidence=IEA

GO:0035640 "exploration behavior" evidence=IEA

GO:0035520 "monoubiquitinated protein deubiquitination" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0010810 "regulation of cell-substrate adhesion" evidence=IEA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M391	ATX3H_ARATH	3, ., 4, ., 1, 9, ., 1, 2	0.8626	0.9627	0.6464	yes	no
Q8LQ36	ATX3_ORYSJ	3, ., 4, ., 1, 9, ., 1, 2	0.7606	0.9787	0.5476	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	0.963
3rd Layer	3.4.19.12	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	188
pfam02099	158	pfam02099, Josephin, Josephin	2e-85

>gnl|CDD|216874 pfam02099, Josephin, Josephin

 Score =  248 bits (635), Expect = 2e-85
 Identities = 92/161 (57%), Positives = 117/161 (72%), Gaps = 3/161 (1%)

Query: 14  VQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESH 73
            QE +LCA HC+N +LQGP+FSEFDLA++A +LD+ ER  +        +   FL E SH
Sbjct: 1   RQEGQLCAQHCLNNLLQGPYFSEFDLASIAKELDQKERNKLSVE---HWTPKSFLDEPSH 57

Query: 74  NVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVN 133
           NV   G+FSIQVL+ ALEVW L VIP + P    + +DP+LE  FIC+L +HWF IRKVN
Sbjct: 58  NVDDTGNFSIQVLETALEVWGLSVIPWHSPRVGASSLDPDLERGFICNLSEHWFTIRKVN 117

Query: 134 GEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGN 174
           G WYN +SL AAPEH+SKFYLSA+LD LK  G+S+F+VRG+
Sbjct: 118 GTWYNLNSLLAAPEHISKFYLSAFLDQLKSEGYSVFVVRGD 158

Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
PF02099	157	Josephin: Josephin; InterPro: IPR006155 Human gene	100.0
KOG2935	315	consensus Ataxin 3/Josephin [General function pred	100.0
KOG2934	204	consensus Uncharacterized conserved protein, conta	100.0
cd02424	129	Peptidase_C39E A sub-family of peptidase family C3	91.96
cd02420	125	Peptidase_C39D A sub-family of peptidase family C3	87.8
cd02549	141	Peptidase_C39A A sub-family of peptidase family C3	87.25
cd02419	127	Peptidase_C39C A sub-family of peptidase family C3	86.2
PF03412	131	Peptidase_C39: Peptidase C39 family This is family	84.52
cd02418	136	Peptidase_C39B A sub-family of peptidase family C3	82.52
PF01088	214	Peptidase_C12: Ubiquitin carboxyl-terminal hydrola	82.15
cd02259	122	Peptidase_C39_like Peptidase family C39 mostly con	80.86

>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease

Probab=100.00  E-value=5.1e-65  Score=411.51  Aligned_cols=157  Identities=48%  Similarity=0.869  Sum_probs=141.7

Q ss_pred             eccchhhHHHHHHhhhCCCCCCHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCCCCCchHHHHHHHHhhC
Q 045385           14 VQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVW   93 (188)
Q Consensus        14 kQ~~~lCalHaLNnLlQ~~~ft~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~~GNydinVL~~AL~~~   93 (188)
                      ||+++|||+||||||||||+||+.||++||++||+.||..|.+   ++.++.+++.++|+||+++||||||||++||++|
T Consensus         1 kQ~~~lCalHaLNnLlQ~~~ft~~dL~~Ia~~Ld~~E~~~~~~---~~~~~~~~~~~~s~n~~~~GnysinVL~~AL~~~   77 (157)
T PF02099_consen    1 KQELQLCALHALNNLLQGPYFTAVDLDEIAQELDEEERSLMAE---DSWTPLSFLFNPSRNVDGTGNYSINVLMAALQVW   77 (157)
T ss_dssp             S-STTSHHHHHHHHHCTSS-S-HHHHHHHHHHHHHHHHHHHHC---TSHHHHHHHTSTSSTCSTTSTCECHHHHHHHHCC
T ss_pred             CcHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHhChhhhhhhhc---cCccchhhccccccCccccCCcCHHHHHHHHHHc
Confidence            8999999999999999999999999999999999999999987   4556777888899999999999999999999999


Q ss_pred             CceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeCCEEEEeeCCCCCceEcchhhHHHHHHHHHhCCeEEEEEEC
Q 045385           94 DLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRG  173 (188)
Q Consensus        94 ~~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~g~wyNLDS~l~~P~~i~~~~L~~~L~~l~~~g~sIFvV~g  173 (188)
                      |++++||..++.....++|+.+.|||||.+|||||||||+|+||||||++++|+.|+++||.+||++++++||+||||+|
T Consensus        78 g~~~~~~~~~~~~~~~~~~~~~~gfI~N~~~HWf~iRki~~~wyNLDS~l~~P~~i~~~~l~~fL~~l~~~g~~ifvV~~  157 (157)
T PF02099_consen   78 GLELVPWFDKRMQEASIDPDNEFGFICNLSRHWFAIRKIGGQWYNLDSKLKEPELISDFYLSAFLQQLQSEGYSIFVVRG  157 (157)
T ss_dssp             T-EEEETTSHHHHHCC--CCCSSEEEEECTTEEEEEEEETTEEEEECTTTSS-EEE-HHHHHHHHHHHHCCTEEEEEEES
T ss_pred             CceEEEccCccchhhhcCchhceEEEeccCcceEEEEeeCCeeEeccCCCCCCcccCHHHHHHHHHHHHhCCcEEEEEeC
Confidence            99999887777788889999999999999999999999999999999999999999999999999999999999999986

Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.

>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]

Probab=100.00  E-value=4.7e-62  Score=416.81  Aligned_cols=164  Identities=59%  Similarity=1.007  Sum_probs=161.0

Q ss_pred             CCceeeeccchhhHHHHHHhhhCCCCCCHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCCCCCchHHHHH
Q 045385            8 GMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQ   87 (188)
Q Consensus         8 ~~iYhEkQ~~~lCalHaLNnLlQ~~~ft~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~~GNydinVL~   87 (188)
                      +.||||+|+..|||+||||+||||++|++.||+      |..||..|++|++.+..|.+|++++|+||+++|+||||||.
T Consensus         2 ~~ifhE~QE~~LCAqHclN~lLQg~~fs~~dLa------D~~erm~m~Eg~v~g~~~~~fl~~~SeNm~~sG~FSIQVl~   75 (315)
T KOG2935|consen    2 GSIFHEVQESNLCAQHCLNTLLQGPFFSEFDLA------DGKERMRMAEGGVTGEFYGDFLQQPSENMDDSGFFSIQVLS   75 (315)
T ss_pred             CchhhhhhhhhHHHHHHHHHHhcccccChhhhh------hHHHHHHHHhcccccccccccccCCCcCcCccCceeHHHHH
Confidence            479999999999999999999999999999999      88899999999999999999999999999999999999999


Q ss_pred             HHHhhCCceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeCCEEEEeeCCCCCceEcchhhHHHHHHHHHhCCeE
Q 045385           88 KALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWS  167 (188)
Q Consensus        88 ~AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~g~wyNLDS~l~~P~~i~~~~L~~~L~~l~~~g~s  167 (188)
                      +||++||++++++++|++.++.+||.++++||||+++|||+|||+|++||||||.+.+|+.|+++||++||+||+++|||
T Consensus        76 kALe~w~Leli~~nnP~~~~~~idP~~erafICnl~eHWF~iRKfg~qWfnlnSllagPellSdtyls~FL~qlq~egyS  155 (315)
T KOG2935|consen   76 KALEVWGLELIPFNNPEYQPLQIDPINERAFICNLKEHWFTIRKFGKQWFNLNSLLAGPELLSDTYLSAFLAQLQQEGYS  155 (315)
T ss_pred             HHHHhhceeeeecCChhhhhccCCcchhhhhhhcchhhhhhHhhhcchhccchhhhcchHHHHHHHHHHHHHHHHhCCee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCC
Q 045385          168 IFIVRGNFPK  177 (188)
Q Consensus       168 IFvV~g~lp~  177 (188)
                      ||||.|+||+
T Consensus       156 IFVVkG~lP~  165 (315)
T KOG2935|consen  156 IFVVKGDLPD  165 (315)
T ss_pred             EEEEecCCCC
Confidence            9999999995

>KOG2934 consensus Uncharacterized conserved protein, contains Josephin domain [General function prediction only]

Probab=100.00  E-value=2.6e-42  Score=281.68  Aligned_cols=148  Identities=26%  Similarity=0.429  Sum_probs=132.4

Q ss_pred             CCCceeeeccchhhHHHHHHhhhCCC-CCCHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccc-cCCCCCchHH
Q 045385            7 GGMLYHEVQESKLCAVHCVNTVLQGP-FFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHN-VSLDGDFSIQ   84 (188)
Q Consensus         7 ~~~iYhEkQ~~~lCalHaLNnLlQ~~-~ft~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n-~~~~GNydin   84 (188)
                      ...||||||++.+||+|||||+||++ .||+..+++||..|.+..   |.+               ||+ +...||||+|
T Consensus        23 p~~iYherq~r~lc~lhAlnnv~q~~n~ftr~~~~d~c~~l~p~s---~~~---------------Phrs~~g~Gnydvn   84 (204)
T KOG2934|consen   23 PPGIYHERQRRELCALHALNNVFQRSNAFTRPVLDDICTRLKPRS---WLN---------------PHRSWKGPGNYDVN   84 (204)
T ss_pred             CCccchhHHHHHHHHHHHhhhhhhccccccchhhHHHHhhcCccc---ccC---------------ccccccCCCcccHH
Confidence            34699999999999999999999997 999999999999999985   444               454 4568999999


Q ss_pred             HHHHHHhhCCceeEEcCCCCCCCCCCCcccceeeeecc--------------CCceEEEEeeCCEEEEeeCCCCCceEcc
Q 045385           85 VLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHL--------------HDHWFCIRKVNGEWYNFDSLYAAPEHLS  150 (188)
Q Consensus        85 VL~~AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~--------------~rHWfaIRki~g~wyNLDS~l~~P~~i~  150 (188)
                      |||+|||..|++++|||+|. ....+....+.|||.|+              +|||+|+|+.+|.|||||||+.+|++|+
T Consensus        85 vimaalq~~gl~avw~dRrr-d~~~l~L~~v~gfIlnlp~~~slG~L~Lp~~rrhw~alR~~~g~yynldsklr~P~~ig  163 (204)
T KOG2934|consen   85 VIMAALQQCGLEAVWLDRRR-DVTALALSVVFGFILNLPCKFSLGYLRLPVMRRHWLALRSPPGKYYNLDSKLREPECIG  163 (204)
T ss_pred             HHHHHHHhcCceeeeccccC-CcchhhhHHHHHHHHcCCchhccccccchhHHhhhHhhhCCCCceecccccccCCcccc
Confidence            99999999999999999987 56778888999999996              8999999999999999999999999999


Q ss_pred             h-hhHHHHHH-HHHhCCeEEEEEEC
Q 045385          151 K-FYLSAYLD-SLKGFGWSIFIVRG  173 (188)
Q Consensus       151 ~-~~L~~~L~-~l~~~g~sIFvV~g  173 (188)
                      + ..+.+||+ ++...-+++|+|..
T Consensus       164 ~e~~~~~fla~hl~~~~~el~lvi~  188 (204)
T KOG2934|consen  164 TENDFREFLATHLSMAIEELILVIN  188 (204)
T ss_pred             cchhHHHHHHHHHHhhhhhheeeec
Confidence            7 68999998 56666699988853

>cd02424 Peptidase_C39E A sub-family of peptidase family C39

Probab=91.96  E-value=1.6  Score=32.92  Aligned_cols=102  Identities=11%  Similarity=0.198  Sum_probs=64.3

Q ss_pred             chhhHHHHHHhhhCC---CCCCHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCCCCCchHHHHHHHHhhC
Q 045385           17 SKLCAVHCVNTVLQG---PFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVW   93 (188)
Q Consensus        17 ~~lCalHaLNnLlQ~---~~ft~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~~GNydinVL~~AL~~~   93 (188)
                      ..-||+.||=.+++-   ...+..+|...   +.                           ....| +|+.-|.++++..
T Consensus         9 ~~dcgla~l~~i~~~~~g~~~~~~~l~~~---~~---------------------------~~~~g-~s~~~l~~~a~~~   57 (129)
T cd02424           9 LNDCGIAVIQMLYNHYYKKKYDLNELKIK---AN---------------------------LKKNG-LSIYDLENLAKKF   57 (129)
T ss_pred             ccchHHHHHHHHHHHhcCCCccHHHHHHH---hC---------------------------CCCCC-ccHHHHHHHHHHc
Confidence            457999999988854   34555555431   11                           01235 8899999999999


Q ss_pred             CceeEEcCCCCCCCCCCCcccceeeeec--cCCceEEEEee-CCEEEEeeCCCCCceEcchh
Q 045385           94 DLQVIPLNCPIAEPAQIDPELENAFICH--LHDHWFCIRKV-NGEWYNFDSLYAAPEHLSKF  152 (188)
Q Consensus        94 ~~~~~~~d~~~~~~~~~~~~~~~gFI~N--~~rHWfaIRki-~g~wyNLDS~l~~P~~i~~~  152 (188)
                      |+++.-+..+......+ +. ..-.|++  -..||+-++++ ++.++-.|. -.+|+.++..
T Consensus        58 Gl~~k~~~~~~~~l~~~-~~-p~P~i~~~~~~~hfvVl~~~~~~~v~I~DP-~~g~~~~s~~  116 (129)
T cd02424          58 GLETESYQGSFLEFLEL-KN-KFIILLKSNGLNHFVIVKKIKKNKFIVLDP-KKGKYKITYK  116 (129)
T ss_pred             CCceeEEEcCHHHHhhc-cC-CEEEEEecCCCCeEEEEEEEECCEEEEECC-CCCCEEeCHH
Confidence            99876654322111111 01 2233443  23699999999 668889999 6788888753

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family, which contains Colicin V perocessing peptidase.

>cd02420 Peptidase_C39D A sub-family of peptidase family C39

Probab=87.80  E-value=2.6  Score=31.09  Aligned_cols=101  Identities=15%  Similarity=0.154  Sum_probs=63.3

Q ss_pred             chhhHHHHHHhhhCC--CCCCHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCCCCCchHHHHHHHHhhCC
Q 045385           17 SKLCAVHCVNTVLQG--PFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEVWD   94 (188)
Q Consensus        17 ~~lCalHaLNnLlQ~--~~ft~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~~GNydinVL~~AL~~~~   94 (188)
                      ..-|++.||=.+++-  -..|..+|...   +.                           ....| +++..|.+|++..|
T Consensus         9 ~~~~gl~~l~~i~~~~g~~~~~~~l~~~---~~---------------------------~~~~~-~~~~~l~~~a~~~G   57 (125)
T cd02420           9 ATECGAASLAIILAYYGRYVPLSELRIA---CG---------------------------VSRDG-SNASNLLKAAREYG   57 (125)
T ss_pred             ccCHHHHHHHHHHHHcCCCCCHHHHHHH---cC---------------------------CCCCC-CCHHHHHHHHHHcC
Confidence            357999999988875  35666666431   10                           01134 68889999999999


Q ss_pred             ceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeC-CEEEEeeCCCCCceEcchh
Q 045385           95 LQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVN-GEWYNFDSLYAAPEHLSKF  152 (188)
Q Consensus        95 ~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~-g~wyNLDS~l~~P~~i~~~  152 (188)
                      +++.-...+-.   .++....=..+.....||+-|-+++ +.++..|... +|+.++..
T Consensus        58 l~~~~~~~~~~---~L~~~~lP~I~~~~~g~~~Vl~~~~~~~~~i~dp~~-~~~~~s~~  112 (125)
T cd02420          58 LTAKGYKKDLE---ALREVSLPAIVFWNFNHFLVVEGFDKRKVFLNDPAT-GRRTVSLE  112 (125)
T ss_pred             cccceEecCHH---HHhcCCCCEEEEeCCCEEEEEEEEeCCEEEEECCCc-CceeecHH
Confidence            87654433211   1111111122233467999999985 5788889864 78888754

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.

>cd02549 Peptidase_C39A A sub-family of peptidase family C39

Probab=87.25  E-value=5.3  Score=29.84  Aligned_cols=125  Identities=18%  Similarity=0.092  Sum_probs=73.6

Q ss_pred             ccchhhHHHHHHhhhCCC--CCCHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCCCCCchHHHHHHH-Hh
Q 045385           15 QESKLCAVHCVNTVLQGP--FFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKA-LE   91 (188)
Q Consensus        15 Q~~~lCalHaLNnLlQ~~--~ft~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~~GNydinVL~~A-L~   91 (188)
                      |...-|+..||-.+++.-  ..+..++...            ...             ........| .+..-|..+ ++
T Consensus         2 ~~~~~C~~~slamvl~~~g~~~~~~~l~~~------------~~~-------------~~~~~~~~g-~~~~~l~~~~a~   55 (141)
T cd02549           2 QLENGCGPTSLAMVLSYLGVKVTKPQLAAE------------GNT-------------YDFAKDGYG-TYPKPIVSAAAR   55 (141)
T ss_pred             CCCCccHHHHHHHHHHhcCCCCCHHHHHhh------------ccc-------------cccCCCCCC-cCHHHHHHHHHh
Confidence            566789999999999863  3344444321            000             011122346 556667777 99


Q ss_pred             hCCceeEEcCCCCCCCCCCCcccceeeeecc--------CCceEEEEeeC--CEEEEeeCCCCCceEcchhhHHHHHHHH
Q 045385           92 VWDLQVIPLNCPIAEPAQIDPELENAFICHL--------HDHWFCIRKVN--GEWYNFDSLYAAPEHLSKFYLSAYLDSL  161 (188)
Q Consensus        92 ~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~--------~rHWfaIRki~--g~wyNLDS~l~~P~~i~~~~L~~~L~~l  161 (188)
                      .+|+++..+.....-...  .+.-.-+|+.+        ..||+.|..++  +..+-.|.....|..++.   ..|.+..
T Consensus        56 ~~G~~~~~~~~~~~~~~~--l~~~~Pvi~~~~~~~~~~~~gH~vVv~g~~~~~~~~i~DP~~~~~~~~~~---~~f~~~w  130 (141)
T cd02549          56 KYGLVVRPLTGLLALLRQ--LAAGHPVIVSVNLGVSITPSGHAMVVIGYDRKGNVYVNDPGGGRRLVVSF---DEFEKAW  130 (141)
T ss_pred             hCCCcEEECCCHHHHHHH--HHCCCeEEEEEecCcccCCCCeEEEEEEEcCCCCEEEECCCCCcCEEEeH---HHHHHHH
Confidence            999988876543210011  11223445543        56999999987  567788887667777774   3455555


Q ss_pred             HhCCeEEEE
Q 045385          162 KGFGWSIFI  170 (188)
Q Consensus       162 ~~~g~sIFv  170 (188)
                      ...|+-.++
T Consensus       131 ~~~~~~~~~  139 (141)
T cd02549         131 KRMGGQAVV  139 (141)
T ss_pred             HHcCCceEE
Confidence            566644443

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are

>cd02419 Peptidase_C39C A sub-family of peptidase family C39

Probab=86.20  E-value=5  Score=29.57  Aligned_cols=82  Identities=12%  Similarity=0.079  Sum_probs=50.2

Q ss_pred             chHHHHHHHHhhCCceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeCC-EEEEeeCCCCCceEcchhhHHHHHH
Q 045385           81 FSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNG-EWYNFDSLYAAPEHLSKFYLSAYLD  159 (188)
Q Consensus        81 ydinVL~~AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~g-~wyNLDS~l~~P~~i~~~~L~~~L~  159 (188)
                      ++...|..+++..|+++.-...+-.   .+.....=.++.....||+.|-++++ .+...|+.. +|+.++..+   |.+
T Consensus        44 ~~~~~l~~~a~~~Gl~~~~~~~~~~---~l~~~~lP~i~~~~~g~~~Vl~~~~~~~~~i~dp~~-~~~~~~~~e---l~~  116 (127)
T cd02419          44 ATLADLIDIAQQLGLSTRALRLDLE---ELGQLKLPCILHWDMNHFVVLKKVSRRRIVIHDPAL-GKRKLSLEE---ASR  116 (127)
T ss_pred             cCHHHHHHHHHHCCCceeEEEccHH---HHhhCCCCEEEEECCCEEEEEEEEcCCEEEEECCcc-CCEEEcHHH---HHh
Confidence            8999999999999987765443211   11111112333345579999999865 566668754 688887533   323


Q ss_pred             HHHhCCeEEEEE
Q 045385          160 SLKGFGWSIFIV  171 (188)
Q Consensus       160 ~l~~~g~sIFvV  171 (188)
                      ..  .|+.+++.
T Consensus       117 ~~--~g~~i~~~  126 (127)
T cd02419         117 HF--TGVALELW  126 (127)
T ss_pred             hC--CcEEEEEe
Confidence            22  35655543

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.

>PF03412 Peptidase_C39: Peptidase C39 family This is family C39 in the peptidase classification

Probab=84.52  E-value=4  Score=30.35  Aligned_cols=120  Identities=21%  Similarity=0.279  Sum_probs=68.2

Q ss_pred             ecc-chhhHHHHHHhhhCCCCCCHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCCCCCchHHHHHHHHhh
Q 045385           14 VQE-SKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEV   92 (188)
Q Consensus        14 kQ~-~~lCalHaLNnLlQ~~~ft~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~~GNydinVL~~AL~~   92 (188)
                      +|. ..=||+=||=.+++. +--+.+.++|.+.+...+                            +-++..-|..+++.
T Consensus         6 ~Q~~~~dcg~acl~~l~~~-~g~~~s~~~l~~~~~~~~----------------------------~g~s~~~L~~~~~~   56 (131)
T PF03412_consen    6 KQSDSNDCGLACLAMLLKY-YGIPVSEEELRRQLGTSE----------------------------EGTSLADLKRAARK   56 (131)
T ss_dssp             --SSTT-HHHHHHHHHHHH-TT----HHHHHCCTT-BT----------------------------TB--CCCHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHHH-hCCCchHHHHHHHhcCCc----------------------------cCCCHHHHHHHHHh
Confidence            455 467999999888887 223444444444442111                            11334458889999


Q ss_pred             CCceeEEcCCCCCCCCCCCcccceeeeec-cCCceEEEEeeCC-EEEEeeCCCCCceEcchhhHHHHHHHHHhCCeEEEE
Q 045385           93 WDLQVIPLNCPIAEPAQIDPELENAFICH-LHDHWFCIRKVNG-EWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFI  170 (188)
Q Consensus        93 ~~~~~~~~d~~~~~~~~~~~~~~~gFI~N-~~rHWfaIRki~g-~wyNLDS~l~~P~~i~~~~L~~~L~~l~~~g~sIFv  170 (188)
                      .|++...+......   + .+...-+|+. ...||+-|-++++ ..+-.|. ..+++.++..   +|.+..  .|+-|++
T Consensus        57 ~gl~~~~~~~~~~~---l-~~~~~P~I~~~~~~h~vVi~~~~~~~~~i~dP-~~g~~~~~~~---~f~~~w--~G~~l~~  126 (131)
T PF03412_consen   57 YGLKAKAVKLNFEK---L-KRLPLPAIAHLKDGHFVVIYKIDDGRVLIYDP-KKGKIKLSKE---EFEEIW--TGEVLLI  126 (131)
T ss_dssp             TTEEEEEEE--GGG---C-TCGGSSEEEEECCCEEEEEEEECCCEEEECCT-TTCEEEEEHH---HHHHHE--EEEEEEE
T ss_pred             cccceeeeecchhh---h-hhccccEEEEecCcceEEEEeEcCcEEEEEeC-CCCeEEEeHH---HHHhhC--CCEEEEE
Confidence            99988776543321   1 2233455555 5679999999964 6778888 6788888743   344433  3566555


Q ss_pred             EE
Q 045385          171 VR  172 (188)
Q Consensus       171 V~  172 (188)
                      -.
T Consensus       127 ~~  128 (131)
T PF03412_consen  127 KP  128 (131)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

; InterPro: IPR005074 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences defined by this cysteine peptidase domain belong to the MEROPS peptidase family C39 (clan CA). It is found in a wide range of ABC transporters, which are maturation proteases for peptide bacteriocins, the proteolytic domain residing in the N-terminal region of the protein []. A number of the proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrelated to the N-terminal signal sequences which direct proteins across the cytoplasmic membrane via the sec pathway. Their processing sites are also different from typical signal peptidase cleavage sites, suggesting that a different processing enzyme is involved. ; GO: 0005524 ATP binding, 0008233 peptidase activity, 0006508 proteolysis, 0016021 integral to membrane; PDB: 3K8U_A 3B79_A.

>cd02418 Peptidase_C39B A sub-family of peptidase family C39

Probab=82.52  E-value=9.8  Score=28.19  Aligned_cols=105  Identities=17%  Similarity=0.206  Sum_probs=62.6

Q ss_pred             ecc-chhhHHHHHHhhhCC--CCCCHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCCCCCchHHHHHHHH
Q 045385           14 VQE-SKLCAVHCVNTVLQG--PFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKAL   90 (188)
Q Consensus        14 kQ~-~~lCalHaLNnLlQ~--~~ft~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~~GNydinVL~~AL   90 (188)
                      +|. ..-|++.||=.+++.  ..++..++..   .+.                        .+   ..| ++...|..++
T Consensus         5 ~q~~~~~~gl~~l~~~~~~~g~~~~~~~l~~---~~~------------------------~~---~~~-~~~~~l~~~a   53 (136)
T cd02418           5 LQVDEMDCGAACLAMIAKYYGKNYSLAKLRE---LAG------------------------TD---REG-TSLLGLVKAA   53 (136)
T ss_pred             EecCcccHHHHHHHHHHHHhCCCCCHHHHHH---HcC------------------------CC---CCC-cCHHHHHHHH
Confidence            554 356999999888875  3456555432   110                        00   123 7888999999


Q ss_pred             hhCCceeEEcCCCCCCCCCCCcccceeeee-----ccCCceEEEEeeCCE-EEEeeCCCCCceEcchh
Q 045385           91 EVWDLQVIPLNCPIAEPAQIDPELENAFIC-----HLHDHWFCIRKVNGE-WYNFDSLYAAPEHLSKF  152 (188)
Q Consensus        91 ~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~-----N~~rHWfaIRki~g~-wyNLDS~l~~P~~i~~~  152 (188)
                      +..|+++.-...+... ..+.. ...-+|+     ....||+.|-++++. -+..|. ...|+.++..
T Consensus        54 ~~~Gl~~~~~~~~~~~-~~l~~-~~~P~I~~~~~~~~~~~~~Vl~~~~~~~~~i~dp-~~~~~~~~~~  118 (136)
T cd02418          54 EKLGFETRAVKADMDL-FELKD-IPLPFIAHVIKEWKLNHYVVVYKIKKKKILIADP-AVGITKISKE  118 (136)
T ss_pred             HHCCCeeEEEEcccch-hhHhc-CCCCEEEEEccCCCCCeEEEEEEEcCCEEEEECC-CCCCEEeeHH
Confidence            9999887654432210 01111 1122333     345799999999764 455677 6678888743

Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.

>PF01088 Peptidase_C12: Ubiquitin carboxyl-terminal hydrolase, family 1; InterPro: IPR001578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.15  E-value=2.9  Score=35.33  Aligned_cols=110  Identities=17%  Similarity=0.222  Sum_probs=63.7

Q ss_pred             CCCCCceeeecc-chhhH----HHHHHhhhCCCCC----CHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCcccccccccc
Q 045385            5 SNGGMLYHEVQE-SKLCA----VHCVNTVLQGPFF----SEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNV   75 (188)
Q Consensus         5 s~~~~iYhEkQ~-~~lCa----lHaLNnLlQ~~~f----t~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~   75 (188)
                      ..+..|||=||. .--||    +|||-|.-..-..    .-..|-+-+..+++.+|...++..       +.+. .-||.
T Consensus        75 ~~~~~v~f~kQti~NACgt~AlLh~l~N~~~~~~i~~gs~L~~f~~~t~~~~p~~Rg~~l~~~-------~~l~-~aH~s  146 (214)
T PF01088_consen   75 DIPENVFFAKQTIGNACGTIALLHALLNNPDRIEIEPGSILDQFKEFTKDLSPEERGKALENS-------KELR-KAHNS  146 (214)
T ss_dssp             TCGTTS-EES-SSBTGHHHHHHHHHHHTCCCTTCBBTTSHHHHHHHHHTTSTHHHHHHHHHTH-------HHHH-HHHHH
T ss_pred             CCCCCceEeeecCCchhhHHHHHHHHhcccccccccCCchHHHHHHHHhcCCHHHHHHHHhCc-------HHHH-HHHHH
Confidence            345679999999 57887    5666664321112    356677778899999998876531       1111 11221


Q ss_pred             CCCCCchHHHHHHHHhhCCceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeCCEEEEeeCCCCCceEcch
Q 045385           76 SLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSK  151 (188)
Q Consensus        76 ~~~GNydinVL~~AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~g~wyNLDS~l~~P~~i~~  151 (188)
                                    .-..|      +... .....  +..      ..-|.+|.-+++|.=|-||..++.|+..|.
T Consensus       147 --------------~A~~g------~t~~-~~~~~--~~~------~~~HFI~fV~~~G~LyELDG~k~~Pi~~G~  193 (214)
T PF01088_consen  147 --------------FARQG------QTEA-PDDEA--DDE------VDFHFIAFVPVDGHLYELDGRKSGPIDHGP  193 (214)
T ss_dssp             --------------HHCHC------SSTS--H--T--TSC------GCEEEEEEEEETTEEEEEETTSSS-EEEEE
T ss_pred             --------------HhccC------CcCC-Ccccc--CCC------CCccEEEEEeECCeEEEcCCCCCCCeEcCc
Confidence                          11111      1111 00000  111      235999999999999999999999999985

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C12 (ubiquitin C-terminal hydrolase family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. The type example is the human ubiquitin C-terminal hydrolase UCH-L1. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa and 100-200 kDa, IPR001394 from INTERPRO) []: this family are the 20-30 kDa ppeptides which includes the yeast yuh1. Yeast yuh1 protease is known to be active only against small ubiquitin conjugates, being inactive against conjugated beta-galactosidase []. A mammalian homologue, UCH (ubiquitin conjugate hydrolase), is one of the most abundant proteins in the brain []. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process, 0005622 intracellular; PDB: 1CMX_A 4DM9_A 2ETL_A 3IRT_A 3KW5_A 3IFW_A 2LEN_A 3KVF_A 2WDT_C 2WE6_B ....

>cd02259 Peptidase_C39_like Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria

Probab=80.86  E-value=15  Score=26.44  Aligned_cols=69  Identities=17%  Similarity=0.176  Sum_probs=47.2

Q ss_pred             chHHHHHHHHhhCCceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeCC-EEEEeeCCCCCceEcchh
Q 045385           81 FSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNG-EWYNFDSLYAAPEHLSKF  152 (188)
Q Consensus        81 ydinVL~~AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~g-~wyNLDS~l~~P~~i~~~  152 (188)
                      ++...|..+.+..|+++.-...+..   .+.....=+++.....||+.|-++++ .....|..-..|+.++..
T Consensus        39 ~~~~~l~~~a~~~gl~~~~~~~~~~---~l~~~~~P~i~~~~~~~~~Vl~~~~~~~~~i~dp~~~~~~~~~~~  108 (122)
T cd02259          39 LSLADLVSLANKLGLTAQGVKLPLA---ALSRLQLPALLLWKQGHFVILYGADKGQVLIADPLEEGPVTLSES  108 (122)
T ss_pred             CCHHHHHHHHHHcCCeeeEEEcCHH---HhccCCCCEEEEcCCCcEEEEEEEcCCEEEEECCcccCCEEeCHH
Confidence            7888999999999998876543321   12222222444467889999999965 666667756788888754

The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in all sub-families.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	188
2dos_A	176	Structural Basis For The Recognition Of Lys48-Linke		9e-39
2aga_A	190	De-Ubiquitinating Function Of Ataxin-3: Insights Fr		9e-39
2jri_A	182	Solution Structure Of The Josephin Domain Of Ataxin		1e-38
3o65_A	191	Crystal Structure Of A Josephin-Ubiquitin Complex:		3e-32

>pdb|2DOS|A Chain A, Structural Basis For The Recognition Of Lys48-Linked Polyubiquitin Chain By The Josephin Domain Of Ataxin-3, A Putative Deubiquitinating Enzyme Length = 176

Iteration: 1
 Score =  155 bits (393), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 107/167 (64%)
Query: 10  LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
           ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL 
Sbjct: 9   IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQ 68
Query: 70  EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
           + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +
Sbjct: 69  QPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTV 128
Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
           RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P
Sbjct: 129 RKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP 175

>pdb|2AGA|A Chain A, De-Ubiquitinating Function Of Ataxin-3: Insights From The Solution Structure Of The Josephin Domain Length = 190

Iteration: 1
 Score =  155 bits (393), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 107/167 (64%)
Query: 10  LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
           ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL 
Sbjct: 9   IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQ 68
Query: 70  EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
           + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +
Sbjct: 69  QPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTV 128
Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
           RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P
Sbjct: 129 RKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP 175

>pdb|2JRI|A Chain A, Solution Structure Of The Josephin Domain Of Ataxin-3 In Complex With Ubiquitin Molecule. Length = 182

Iteration: 1
 Score =  155 bits (393), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 107/167 (64%)
Query: 10  LYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLT 69
           ++HE QE  LCA HC+N +LQG +FS  +L+++A  LD  ER  M EG V +     FL 
Sbjct: 4   IFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQ 63
Query: 70  EESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCI 129
           + S N+   G FSIQV+  AL+VW L++I  N P  +  +IDP  E +FIC+  +HWF +
Sbjct: 64  QPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTV 123
Query: 130 RKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
           RK+  +W+N +SL   PE +S  YL+ +L  L+  G+SIF+V+G+ P
Sbjct: 124 RKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLP 170

>pdb|3O65|A Chain A, Crystal Structure Of A Josephin-Ubiquitin Complex: Evolutionary Restraints On Ataxin-3 Deubiquitinating Activity Length = 191

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/168 (42%), Positives = 99/168 (58%)
Query: 9   MLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFL 68
            ++HE QE  LCA HC+N +LQG +FS  +LA++A  LD  ER    EG V +     FL
Sbjct: 4   FIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERXRXAEGGVTSEEYLAFL 63
Query: 69  TEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFC 128
            + S N    G FSIQV+  AL+ W L++I  N P  +   IDP  E +FIC+   HWF 
Sbjct: 64  QQPSENXDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHWFT 123
Query: 129 IRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
           IRK    W+N +SL A PE +S   L+ +L  L+   +S+F+V+G+ P
Sbjct: 124 IRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLP 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
3o65_A	191	Putative ataxin-3-like protein; papain-like fold,	1e-69

>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A Length = 191

 Score =  209 bits (532), Expect = 1e-69
 Identities = 72/168 (42%), Positives = 101/168 (60%)

Query: 9   MLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFL 68
            ++HE QE  LCA HC+N +LQG +FS  +LA++A  LD  ER  M EG V +     FL
Sbjct: 4   FIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFL 63

Query: 69  TEESHNVSLDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFC 128
            + S N+   G FSIQV+  AL+ W L++I  N P  +   IDP  E +FIC+   HWF 
Sbjct: 64  QQPSENMDDTGFFSIQVISNALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHWFT 123

Query: 129 IRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSIFIVRGNFP 176
           IRK    W+N +SL A PE +S   L+ +L  L+   +S+F+V+G+ P
Sbjct: 124 IRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDLP 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
3o65_A	191	Putative ataxin-3-like protein; papain-like fold,	100.0
3zua_A	142	CLD, alpha-hemolysin translocation ATP-binding pro	85.29
1xd3_A	230	Ubiquitin carboxyl-terminal esterase L3; enzyme-li	81.21
2wdt_A	232	Ubiquitin carboxyl-terminal hydrolase L3; hydrolas	80.17

>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A

Probab=100.00  E-value=8.5e-74  Score=473.52  Aligned_cols=170  Identities=42%  Similarity=0.778  Sum_probs=164.7

Q ss_pred             CceeeeccchhhHHHHHHhhhCCCCCCHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCCCCCchHHHHHH
Q 045385            9 MLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQK   88 (188)
Q Consensus         9 ~iYhEkQ~~~lCalHaLNnLlQ~~~ft~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~~GNydinVL~~   88 (188)
                      .||||||+.+|||+|||||||||++||+.||++||++||++||..|.++|.++.+|.+++.++|+||+++||||||||++
T Consensus         4 ~IYhEkQ~~~LCalHaLNnLLQg~~Ft~~dL~~Ia~~Ld~~e~~~m~e~g~~~~d~~~~~~~ps~n~~~~GnfsInVl~~   83 (191)
T 3o65_A            4 FIFHEKQEGFLCAQHCLNNLLQGEYFSPVELASIAHQLDEEERMRMAEGGVTSEEYLAFLQQPSENMDDTGFFSIQVISN   83 (191)
T ss_dssp             TSCCCCCCTTCHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHGGGCTTSHHHHHHHTSCCSSBCTTCCBBHHHHHH
T ss_pred             cceeeccchhhHHHHHHHHHhccccCCHHHHHHHHHHcCHHHHHHHhhcCCChHHHHHHhcCCCCCcccCCCccHHHHHH
Confidence            49999999999999999999999999999999999999999999999999888888889888999999999999999999


Q ss_pred             HHhhCCceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeCCEEEEeeCCCCCceEcchhhHHHHHHHHHhCCeEE
Q 045385           89 ALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSI  168 (188)
Q Consensus        89 AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~g~wyNLDS~l~~P~~i~~~~L~~~L~~l~~~g~sI  168 (188)
                      ||++||++++|+|++++...++||..+.|||||.+|||||||||+|+||||||++++|+.|+++||.+||+||+.+||||
T Consensus        84 AL~~~glelv~~d~~~~~~~~~~p~~~~~FI~N~~~HWfaiRkigg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~si  163 (191)
T 3o65_A           84 ALKFWGLEIIHFNNPEYQKLGIDPINERSFICNYKQHWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSV  163 (191)
T ss_dssp             HHHTTTCEEEETTCHHHHHTCCCGGGCCEEEEEESSCEEEEEEETTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEE
T ss_pred             HHHHcCCeEEECCCchhhhhcCChhhhhhhhhccccceeeEEecCCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEE
Confidence            99999999999999987667899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCCC
Q 045385          169 FIVRGNFPKE  178 (188)
Q Consensus       169 FvV~g~lp~~  178 (188)
                      |||+|+||..
T Consensus       164 FvV~g~lP~~  173 (191)
T 3o65_A          164 FVVKGDLPDC  173 (191)
T ss_dssp             EEEESCCCCC
T ss_pred             EEEcCCCCCC
Confidence            9999999983

>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}

Probab=85.29  E-value=2.5  Score=31.26  Aligned_cols=119  Identities=14%  Similarity=0.110  Sum_probs=73.9

Q ss_pred             ccchhhHHHHHHhhhCC--CCCCHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCCCCCchHHHHHHHHhh
Q 045385           15 QESKLCAVHCVNTVLQG--PFFSEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLDGDFSIQVLQKALEV   92 (188)
Q Consensus        15 Q~~~lCalHaLNnLlQ~--~~ft~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~~GNydinVL~~AL~~   92 (188)
                      |...=|++.||-.+++-  ..+|..+|.+.   +..                            ..+-.+..-|.+|.+.
T Consensus         9 ~~~~dcglacLa~i~~~~g~~~s~~~L~~~---~~~----------------------------~~~g~s~~~l~~aa~~   57 (142)
T 3zua_A            9 CHKIDYGLYALEILAQYHNVSVNPEEIKHR---FDT----------------------------DGTGLGLTSWLLAAKS   57 (142)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCCCHHHHHHH---TCT----------------------------TSSCCCHHHHHHHHHT
T ss_pred             CCCCCcHHHHHHHHHHHcCCCCCHHHHHHH---cCC----------------------------CcCCcCHHHHHHHHHH
Confidence            33466999999988864  46777666542   100                            0123688889999999


Q ss_pred             CCceeEEcCCCCCCCCCCCcccceeeeecc-CCceEEEEeeC---CEEEEeeCCCCCceEcchhhHHHHHHHHHhCCeEE
Q 045385           93 WDLQVIPLNCPIAEPAQIDPELENAFICHL-HDHWFCIRKVN---GEWYNFDSLYAAPEHLSKFYLSAYLDSLKGFGWSI  168 (188)
Q Consensus        93 ~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~-~rHWfaIRki~---g~wyNLDS~l~~P~~i~~~~L~~~L~~l~~~g~sI  168 (188)
                      .|+++..+..+......+    ..-+|+.. ..|||.|-+++   +..+-.|.....|+.++-.   .|.+..  .|+-|
T Consensus        58 ~Gl~a~~~~~~~~~L~~l----~lP~Il~~~~g~~~Vv~~~~~~~~~~~I~dP~~g~~~~~s~~---ef~~~w--~G~~l  128 (142)
T 3zua_A           58 LELKVKQVKKTIDRLNFI----SLPALVWREDGRHFILTKVSKEANRYLIFDLEQRNPRVLEQS---EFEALY--QGHII  128 (142)
T ss_dssp             TTEEEEEEECCHHHHTTS----SSSEEECCTTSCCEEEEEEETTTTEEEEEETTTTEEEEEEHH---HHHHHC--CSEEE
T ss_pred             CCCeeEEeecCHHHHhcC----CCCEEEEEcCCCEEEEEEEeCCCCEEEEEcCCCCCcEEecHH---HHHhhC--CCEEE
Confidence            999887765432111111    22344432 45666776674   5799999876568888843   344433  47777


Q ss_pred             EEEEC
Q 045385          169 FIVRG  173 (188)
Q Consensus       169 FvV~g  173 (188)
                      ++...
T Consensus       129 ~~~~~  133 (142)
T 3zua_A          129 LIASR  133 (142)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            77643

>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*

Probab=81.21  E-value=3.4  Score=34.29  Aligned_cols=107  Identities=18%  Similarity=0.236  Sum_probs=64.5

Q ss_pred             CCCCceeeecc-chhhHHHH----HHhhhCCCCC----CHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccC
Q 045385            6 NGGMLYHEVQE-SKLCAVHC----VNTVLQGPFF----SEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVS   76 (188)
Q Consensus         6 ~~~~iYhEkQ~-~~lCalHa----LNnLlQ~~~f----t~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~   76 (188)
                      ....|||=||. .-=||.+|    |=|.-..-.+    +-..|-+-+..+++.+|...++..       +.+. .-||..
T Consensus        80 ~~~~v~f~kQtI~NACgT~AlLh~l~N~~~~i~l~~gs~L~~f~~~t~~~~p~~Rg~~L~n~-------~~i~-~aHns~  151 (230)
T 1xd3_A           80 VTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENY-------DAIR-VTHETS  151 (230)
T ss_dssp             CCTTCCCCCCCSBTCHHHHHHHHHHHTTGGGCCBCTTCHHHHHHHHHTTSCHHHHHHHHHTC-------HHHH-HHHHHH
T ss_pred             CCcCcEEeehhccccHHHHHHHHHHHcCcCCcccCCCchHHHHHHHccCCCHHHHHHHhcCc-------HHHH-HHHHHH
Confidence            34579999999 57888654    4332111122    245566669999999998877531       0111 123221


Q ss_pred             CCCCchHHHHHHHHhhCCceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeCCEEEEeeCCCCCceEcch
Q 045385           77 LDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSK  151 (188)
Q Consensus        77 ~~GNydinVL~~AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~g~wyNLDS~l~~P~~i~~  151 (188)
                                    -+.|-.    ..+.       .+.      ...-|++|.-+++|.=|-||-..+.|+..|.
T Consensus       152 --------------A~~g~t----~~p~-------~~~------~~~~HFI~fV~~~G~LyELDG~k~gPi~~G~  195 (230)
T 1xd3_A          152 --------------AHEGQT----EAPS-------IDE------KVDLHFIALVHVDGHLYELDGRKPFPINHGE  195 (230)
T ss_dssp             --------------HTCSSS----CCCC-------TTS------CCCEEEEEEEEETTEEEEECTTSSSCEEEEE
T ss_pred             --------------hccCCC----CCCC-------CCC------CcCeEEEEEEeeCCEEEEccCCCCCCeecCC
Confidence                          111210    0010       011      2345999988999999999999999999974

>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A

Probab=80.17  E-value=4.8  Score=33.51  Aligned_cols=103  Identities=13%  Similarity=0.142  Sum_probs=65.2

Q ss_pred             CCceeeecc-chhhH----HHHHHhhhCCCCC----CHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCCC
Q 045385            8 GMLYHEVQE-SKLCA----VHCVNTVLQGPFF----SEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSLD   78 (188)
Q Consensus         8 ~~iYhEkQ~-~~lCa----lHaLNnLlQ~~~f----t~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~~   78 (188)
                      ..|||=||. .-=||    +|+|-|.-.+-.+    +-..|-+-+..+++.+|...++..       +.+ +.-||.. .
T Consensus        79 ~~v~f~kQtI~NACgT~AlLh~l~N~~~~i~l~~gs~L~~f~~~t~~~~p~~Rg~~L~n~-------~~i-~~aHns~-~  149 (232)
T 2wdt_A           79 DNVWFIKQYIPNSCGTIALLHLYGNLRNKFELDKDSVLDDFFNKVNEMSAEKRGQELKNN-------KSI-ENLHHEF-C  149 (232)
T ss_dssp             TTSCCCCCCSTTCHHHHHHHHHHHHSTTTSCCCTTSHHHHHHHHTTTSCHHHHHHHHHHC-------HHH-HHHHTTS-S
T ss_pred             CCcEEeeeccccchHHHHHHHHHhcCccccccCCChHHHHHHHHccCCCHHHHHHHhhcc-------HHH-HHHHHhc-c
Confidence            469999999 57787    5666664221222    356667778899999998876521       011 1123332 1


Q ss_pred             CCchHHHHHHHHhhCCceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeCCEEEEeeCCCCCceEcch
Q 045385           79 GDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSK  151 (188)
Q Consensus        79 GNydinVL~~AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~g~wyNLDS~l~~P~~i~~  151 (188)
                      |-                      .+      .|+...    ...-|.+|.-+++|.=|-||-..+.|+..|.
T Consensus       150 g~----------------------t~------~p~~~~----~v~~HFI~fV~~~G~LyELDG~k~gPi~~G~  190 (232)
T 2wdt_A          150 GQ----------------------VE------NRDDIL----DVDTHFIVFVQIEGKIIELDGRKDHPTVHCF  190 (232)
T ss_dssp             CC----------------------CC------SHHHHH----CCCEEEEEEEESSSEEEEECTTSSSCEEEEE
T ss_pred             Cc----------------------cC------CCCCCC----CCCeEEEEEEEeCCEEEEccCCCCCCcccCC
Confidence            10                      00      011100    2346999999999999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1xd3a_	229	Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Huma	89.02
d2etla1	223	Ubiquitin carboxyl-terminal hydrolase isozyme l1 {	85.38

>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase UCH-L
domain: Ubiquitin carboxyl-terminal hydrolase UCH-l3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.02  E-value=1.4  Score=34.64  Aligned_cols=107  Identities=17%  Similarity=0.205  Sum_probs=66.3

Q ss_pred             CCCCceeeecc-chhhHH----HHHHhhhCCCCC----CHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccC
Q 045385            6 NGGMLYHEVQE-SKLCAV----HCVNTVLQGPFF----SEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVS   76 (188)
Q Consensus         6 ~~~~iYhEkQ~-~~lCal----HaLNnLlQ~~~f----t~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~   76 (188)
                      ....|||=||. .--||.    |+|-|....-..    .-..|-+.+..+++.+|...++..       +.+. .-||. 
T Consensus        79 ~~~~v~f~kQti~NACgT~Allh~l~N~~~~~~i~~gs~L~~f~~~t~~~~p~eRg~~l~~~-------~~l~-~aH~s-  149 (229)
T d1xd3a_          79 VTSSVYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENY-------DAIR-VTHET-  149 (229)
T ss_dssp             CCTTCCCCCCCSBTCHHHHHHHHHHHTTGGGCCBCTTCHHHHHHHHHTTSCHHHHHHHHHTC-------HHHH-HHHHH-
T ss_pred             CCccceehhhhhhhhhHHHHHHHHHhcCccccccCCcHHHHHHHHHcCCCCHHHHHHHhhcC-------HHHH-HHHHH-
Confidence            34569999999 688885    555554332112    356677889999999998887631       0111 11221 


Q ss_pred             CCCCchHHHHHHHHhhCCceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeCCEEEEeeCCCCCceEcch
Q 045385           77 LDGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSK  151 (188)
Q Consensus        77 ~~GNydinVL~~AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~g~wyNLDS~l~~P~~i~~  151 (188)
                                   .-..|-      . +  .  -+++...+      -|.+|.-.++|.=|-||-.++.|+..|.
T Consensus       150 -------------~A~~g~------t-~--~--p~~~~~~~------~HFI~fV~~~G~lyELDG~k~~Pi~hG~  194 (229)
T d1xd3a_         150 -------------SAHEGQ------T-E--A--PSIDEKVD------LHFIALVHVDGHLYELDGRKPFPINHGE  194 (229)
T ss_dssp             -------------HHTCSS------S-C--C--CCTTSCCC------EEEEEEEEETTEEEEECTTSSSCEEEEE
T ss_pred             -------------hccccC------C-C--C--CCcccccc------eeEEEEEeeCCEEEEccCCCCCCcccCC
Confidence                         111111      0 0  0  01111222      4999999999999999999999999974

>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase UCH-L
domain: Ubiquitin carboxyl-terminal hydrolase isozyme l1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.38  E-value=2.1  Score=33.37  Aligned_cols=103  Identities=17%  Similarity=0.260  Sum_probs=65.1

Q ss_pred             CCCceeeecc-chhhHH----HHHHhhhCCCCC----CHHHHHHHHhhhCHHHHHHhhhCCCCCCCCCccccccccccCC
Q 045385            7 GGMLYHEVQE-SKLCAV----HCVNTVLQGPFF----SEFDLAALASDLDRSERQVMLEGRVPAASSGDFLTEESHNVSL   77 (188)
Q Consensus         7 ~~~iYhEkQ~-~~lCal----HaLNnLlQ~~~f----t~~dL~~Ia~~Ld~~er~~~~~~~~~~~~~~~~~~~~s~n~~~   77 (188)
                      .+.|||=||. .--||.    |||-|.-+.-..    .-..+-+.+..+++.||...++..                   
T Consensus        76 ~~~v~f~kQtI~NACgT~AlLh~l~N~~~~~~i~~gs~L~~f~~~t~~~~p~eRg~~l~~~-------------------  136 (223)
T d2etla1          76 SPKVYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKN-------------------  136 (223)
T ss_dssp             CTTSCCCCCCSBTCHHHHHHHHHHHTTTTTCCBCTTCHHHHHHHHTTTSCHHHHHHHHHHC-------------------
T ss_pred             CcccEEeHHhhcchhhHHHHHHHHhcCcccccccchhHHHHHHHHccCCCHHHHHHHhhcC-------------------
Confidence            4569999999 577875    555555432122    245667778999999998876531                   


Q ss_pred             CCCchHHHHHHHHhhCCceeEEcCCCCCCCCCCCcccceeeeeccCCceEEEEeeCCEEEEeeCCCCCceEcch
Q 045385           78 DGDFSIQVLQKALEVWDLQVIPLNCPIAEPAQIDPELENAFICHLHDHWFCIRKVNGEWYNFDSLYAAPEHLSK  151 (188)
Q Consensus        78 ~GNydinVL~~AL~~~~~~~~~~d~~~~~~~~~~~~~~~gFI~N~~rHWfaIRki~g~wyNLDS~l~~P~~i~~  151 (188)
                            ..|..|=+..-        +... ...+  .      +..-|.++.-.++|.=|-||-.++.|+..|.
T Consensus       137 ------~~i~~aH~~~a--------~~~~-~~~d--d------~~~~HFI~fV~~~G~lyELDG~k~~Pi~hG~  187 (223)
T d2etla1         137 ------EAIQAAHDAVA--------QEGQ-CRVD--D------KVNFHFILFNNVDGHLYELDGRMPFPVNHGA  187 (223)
T ss_dssp             ------HHHHHHHHHHH--------TTCS-CCCC--C------CCCEEEEEEEEETTEEEEECTTSSSCEEEEE
T ss_pred             ------HHHHHHHHHHh--------cccC-CCCC--C------CcceEEEEEEEeCCEEEEecCCcCCCcccCC
Confidence                  12222222100        0000 0011  1      2346999999999999999999999999973