Citrus Sinensis ID: 045394

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MEAKEENNITSGVSVKVNEATDGFQTAPRTENPVPFPAPAVTSAAEVSPAPVSTAVPTLVTGPGTGTGTEGKKKRGRPRKYGPDGKLTTALSPMPISASIPLTGEYSAWKRGRGRPVDNTKKSYKYEHESPGEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKHKKQRTELAPIVTPISVSVLSAEEIKGGYSGIKPI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccEEEEEEEccccHHHHHHHHHHHcccEEEEEEEEcccEEEEEEcccccccccEEEEEEEEEEEEEEEEcccccccccccccccEEEEEcccccEEEEEccccEEEEccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccEEEcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEccccccccccccccccccEEEEEEcccccEEEccHHHHHEccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
meakeennitsgvsvkvneatdgfqtaprtenpvpfpapavtsaaevspapvstavptlvtgpgtgtgtegkkkrgrprkygpdgklttalspmpisasipltgeysawkrgrgrpvdntkksykyehespgekiayfvganftphvltvnageDVTMKVMSFSQQGSRAICILSangtisnvtlrqptssggtltyeGRFEILSlsgsympsdnggtksrsggmsvslagpdgrvvgGGLAGFLIAAGPVQVVVGSflpghqleqKHKKQrtelapivtpisvSVLSaeeikggysgikpi
Flexible Loop (DISEMBL)
meakeennitsgvsvkvneATDGFQTAPRTENPVPFPAPAVTSAAevspapvstavptlvtgpgtgtgtegkkkrgrprkygpdgklttalspmpisasipltgeysawkrgrgrpvdntkksyKYEHESPGEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSAngtisnvtlrqptssggtlTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKhkkqrtelapivtpisvsvlsaeeikggysgikpi
Low Complexity Region (SEG)
MEAKEENNITSGVSVKVNEATDGFQTAPRTENPVPFPAPAVTSAAEVSPAPVSTAVPTLVtgpgtgtgtegkkkrgrprkygpdgkLTTALSPMPISASIPLTGEYSAWKRGRGRPVDNTKKSYKYEHESPGEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVggglagfliaagPVQVVVGSFLPGHQLEQKHKKQRTELAPIVTPISVSVLSAEEIKGGYSGIKPI
Disordered region (IsUnstruct)
************************************************************************************************************************************EKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQ*****GTLTYEGRFEILS****************************GRVVGGGLAGFLIAAGPVQVVVGSFLPGHQ***********LAPIVTPISVSVLS**************
Disordered Region (DISOPRED)
***************************************************************************************************************************************AYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYM**************SVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSF********************************************
Disordered Region (DISEMBL)
**********SGVSVKVNEATDGFQTAPRTENPVPFPAPA***********VSTAVPTLVTGP******************GPDGKLTTALSPMPISASIPLTGEYSAWKRGRGRPVDNTKKSYKYEHESPGEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYM**************SVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQ*********TELAPIVTPISVSVLSAEEIKGGYSGIKPI
Disordered Region (DISPRO)
*****************NEATDGFQTAP**********************************************************************************************SYKYEHESPGEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGH****************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAKEENNITSGVSVKVNEATDGFQTAPRTENPVPFPAPAVTSAAEVSPAPVSTAVPTLVTGPGTGTGTEGKKKRGRPRKYGPDGKLTTALSPMPISASIPLTGEYSAWKRGRGRPVDNTKKSYKYEHESPGEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKHKKQRTELAPIVTPISVSVLSAEEIKGGYSGIKPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.490	0.475	0.360	3e-09

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 24/172 (13%)

Query: 99  SIPLTGEYSAWKRGRGRPVDNTKKSYK---YEHESPGEKIAYFVGANFTPHVLTVNAGED 155
           S P T   +  KR RGRP  +  K+        +SP              HVL V+ G D
Sbjct: 75  SDPNTSSSAPGKRPRGRPPGSKNKAKPPIIVTRDSPNA---------LRSHVLEVSPGAD 125

Query: 156 VTMKVMSFSQQGSRAICILSANGTISNVTLRQPTS---------SGGTLTYEGRFEILSL 206
           +   V +++++  R + +L  NGT+SNVTLRQP +          GG +T  GRFEILSL
Sbjct: 126 IVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSL 185

Query: 207 SGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSF 258
           +G+ +          +GG+S+ LAG  G+VVGG +   LIA+ PV ++  SF
Sbjct: 186 TGTVL---PPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
224120210	345	predicted protein [Populus trichocarpa]	0.966	0.846	0.648	1e-111
356574795	330	PREDICTED: uncharacterized protein LOC10	0.913	0.836	0.653	1e-102
356535317	330	PREDICTED: uncharacterized protein LOC10	0.913	0.836	0.656	1e-102
356535315	324	PREDICTED: uncharacterized protein LOC10	0.900	0.839	0.654	1e-99
359490175	327	PREDICTED: uncharacterized protein LOC10	0.927	0.856	0.695	6e-98
147801443	1029	hypothetical protein VITISV_039795 [Viti	0.953	0.279	0.637	5e-96
449460854	350	PREDICTED: uncharacterized protein LOC10	0.970	0.837	0.633	3e-95
296084126	323	unnamed protein product [Vitis vinifera]	0.917	0.857	0.674	3e-95
449451944	333	PREDICTED: uncharacterized protein LOC10	0.947	0.858	0.621	3e-93
356561759	348	PREDICTED: uncharacterized protein LOC10	0.973	0.844	0.654	3e-93

>gi|224120210|ref|XP_002318273.1| predicted protein [Populus trichocarpa] gi|222858946|gb|EEE96493.1| predicted protein [Populus trichocarpa]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/336 (64%), Positives = 244/336 (72%), Gaps = 44/336 (13%)

Query: 1   MEAKEENNITSGVSVKVNEATDGFQTAPRTENPVPFPA---------------------- 38
           MEAKE   ++SGV+VK  EA DGF+ APR EN  P P                       
Sbjct: 1   MEAKEGIAVSSGVTVKAEEAPDGFRVAPRNENSSPSPNPNPNPNQNNNHNPNPNSNSNSN 60

Query: 39  --------PAVTSAAEVSPAPVSTAVPTLVTGPGTGTGTEGKKKRGRPRKYGPDGKLTTA 90
                   P    A +V  +PVS            GT T GKKKRGRPRKY PDG L  A
Sbjct: 61  SNPSPNPDPGQLGAPQVGASPVSA----------VGTDTAGKKKRGRPRKYAPDGTLALA 110

Query: 91  LSPMPISASIPLTGEYSAWKRGRGRPVDNTKKSYKYEHESPGEKIAYFVGANFTPHVLTV 150
           LSPMPIS+SIPLTG+Y AWKRGRGRP+++ KK + YE+ES G+KIAYFVG NF PHV+TV
Sbjct: 111 LSPMPISSSIPLTGDYYAWKRGRGRPLESVKKQHNYEYESTGDKIAYFVGTNFMPHVITV 170

Query: 151 NAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSY 210
           NAGEDVTMKVMSFSQQG+RAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGS+
Sbjct: 171 NAGEDVTMKVMSFSQQGARAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSF 230

Query: 211 MPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKHKK 270
           MPS+NGGTK RSGGMSVSLAGPDGRVVGGGLAG L+AAGPVQVVVGSFL GHQ E KHKK
Sbjct: 231 MPSENGGTKGRSGGMSVSLAGPDGRVVGGGLAGLLVAAGPVQVVVGSFLLGHQQESKHKK 290

Query: 271 QRTELA----PIVTPISVSVLSAEEIKGGYSGIKPI 302
           QR E A    P   P +++V+S EE+KG Y G++PI
Sbjct: 291 QRIEPALAVIPATIPATINVISPEEMKGSYGGVRPI 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574795|ref|XP_003555530.1| PREDICTED: uncharacterized protein LOC100789179 [Glycine max]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/309 (65%), Positives = 233/309 (75%), Gaps = 33/309 (10%)

Query: 1   MEAKEENNITSGVSVKVNEATDGFQTAPRTENPVPFPAPAVTSAAEVSPAPVSTAVPTLV 60
           ME +E   +  G     +EA + F  APR EN + F     + A   +PAP         
Sbjct: 1   MEGRENFGVVVG-----DEAPESFHVAPRIENNLDF-----SRATVPAPAP--------- 41

Query: 61  TGPGTGTGTEGKKKRGRPRKYGPDGK----LTTALSPMPISASIPLTGEYSAWKRGRGRP 116
                   TEGKKKRGRPRKYGPDGK      TALSPMPIS+SIPLTGE+SAWK GRGRP
Sbjct: 42  -------ATEGKKKRGRPRKYGPDGKPALGAVTALSPMPISSSIPLTGEFSAWKSGRGRP 94

Query: 117 VDNTKKS-YKYEHESPG--EKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICI 173
           V++ KKS +K+E ESPG  E IAY VGANFTPHVLTVNAGEDVTMK+M+FSQQGSRAICI
Sbjct: 95  VESIKKSSFKFEVESPGPVEGIAYSVGANFTPHVLTVNAGEDVTMKIMTFSQQGSRAICI 154

Query: 174 LSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPD 233
           LSA GTISNVTLRQP+S GGTLTYEG FEILSLSGS+MP++NG T+SRSGGMSVSLAGPD
Sbjct: 155 LSATGTISNVTLRQPSSCGGTLTYEGLFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPD 214

Query: 234 GRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKHKKQRTELAPIVTPISVSVLSAEEIK 293
           GRV+GGGLAG L+AAGPVQVVV SFLPGHQLE K KKQR E    ++P  V+++++EEIK
Sbjct: 215 GRVMGGGLAGLLVAAGPVQVVVASFLPGHQLEHKTKKQRVEHVSTISPSPVNLITSEEIK 274

Query: 294 GGYSGIKPI 302
             + G+KPI
Sbjct: 275 VSFGGVKPI 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535317|ref|XP_003536193.1| PREDICTED: uncharacterized protein LOC100776862 isoform 2 [Glycine max]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/309 (65%), Positives = 233/309 (75%), Gaps = 33/309 (10%)

Query: 1   MEAKEENNITSGVSVKVNEATDGFQTAPRTENPVPFPAPAVTSAAEVSPAPVSTAVPTLV 60
           ME +E   +  G     +EA + F  APR EN + F     + A   +PAP         
Sbjct: 1   MEGRENFGVVVG-----DEAPESFHVAPRIENNLDF-----SRATVPAPAPP-------- 42

Query: 61  TGPGTGTGTEGKKKRGRPRKYGPDGK----LTTALSPMPISASIPLTGEYSAWKRGRGRP 116
                   TEGKKKRGRPRKYGPDGK      TALSPMPIS+SIPLTGE+SAWKRGRGRP
Sbjct: 43  --------TEGKKKRGRPRKYGPDGKPALGAVTALSPMPISSSIPLTGEFSAWKRGRGRP 94

Query: 117 VDNTKKS-YKYEHESPG--EKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICI 173
           V++ KKS +K+E ESPG  E IAY VGANFTPHVLTVNAGEDVTMK+MSFSQQGSRAICI
Sbjct: 95  VESIKKSSFKFEVESPGPGEGIAYSVGANFTPHVLTVNAGEDVTMKIMSFSQQGSRAICI 154

Query: 174 LSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPD 233
           LSA GTISNVTLRQP+S GGTLTYEGRFEILSLSGS+MP++NG T+SRSGGMSVSLAGPD
Sbjct: 155 LSATGTISNVTLRQPSSCGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPD 214

Query: 234 GRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKHKKQRTELAPIVTPISVSVLSAEEIK 293
           GRV+GGGLAG L+AAGPVQVVV SFLPGHQLE K KKQR      ++P  V+++++EEI 
Sbjct: 215 GRVMGGGLAGLLVAAGPVQVVVASFLPGHQLEHKTKKQRVGHVSTISPSPVNLITSEEII 274

Query: 294 GGYSGIKPI 302
             + G+KPI
Sbjct: 275 VSFGGVKPI 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535315|ref|XP_003536192.1| PREDICTED: uncharacterized protein LOC100776862 isoform 1 [Glycine max]

 Score =  368 bits (945), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 201/307 (65%), Positives = 229/307 (74%), Gaps = 35/307 (11%)

Query: 1   MEAKEENNITSGVSVKVNEATDGFQTAPRTENPVPFPAPAVTSAAEVSPAPVSTAVPTLV 60
           ME +E   +  G     +EA + F  APR EN + F    V       PAP   A PT  
Sbjct: 1   MEGRENFGVVVG-----DEAPESFHVAPRIENNLDFSRATV-------PAP---APPT-- 43

Query: 61  TGPGTGTGTEGKKKRGRPRKYGPDGK----LTTALSPMPISASIPLTGEYSAWKRGRGRP 116
                    EGKKKRGRPRKYGPDGK      TALSPMPIS+SIPLTGE+SAWKRGRGRP
Sbjct: 44  ---------EGKKKRGRPRKYGPDGKPALGAVTALSPMPISSSIPLTGEFSAWKRGRGRP 94

Query: 117 VDNTKKS-YKYEHESPGEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILS 175
           V++ KKS +K+     GE IAY VGANFTPHVLTVNAGEDVTMK+MSFSQQGSRAICILS
Sbjct: 95  VESIKKSSFKFL----GEGIAYSVGANFTPHVLTVNAGEDVTMKIMSFSQQGSRAICILS 150

Query: 176 ANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGR 235
           A GTISNVTLRQP+S GGTLTYEGRFEILSLSGS+MP++NG T+SRSGGMSVSLAGPDGR
Sbjct: 151 ATGTISNVTLRQPSSCGGTLTYEGRFEILSLSGSFMPTENGVTRSRSGGMSVSLAGPDGR 210

Query: 236 VVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKHKKQRTELAPIVTPISVSVLSAEEIKGG 295
           V+GGGLAG L+AAGPVQVVV SFLPGHQLE K KKQR      ++P  V+++++EEI   
Sbjct: 211 VMGGGLAGLLVAAGPVQVVVASFLPGHQLEHKTKKQRVGHVSTISPSPVNLITSEEIIVS 270

Query: 296 YSGIKPI 302
           + G+KPI
Sbjct: 271 FGGVKPI 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490175|ref|XP_002268693.2| PREDICTED: uncharacterized protein LOC100254941 [Vitis vinifera]

 Score =  363 bits (932), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 208/299 (69%), Positives = 233/299 (77%), Gaps = 19/299 (6%)

Query: 1   MEAKEENNITSGVSVKVNEATDGFQTAPRTENPVPF-PAPAVTSAAEVSPAPVSTAVPTL 59
           ME  E   I SGV+VK  EA D ++ A R+ENP  F P  A T      PAPVS A+P+ 
Sbjct: 1   MEGTE--GINSGVTVKGEEAPDTYRVAARSENPSEFAPGSAPT------PAPVSVAMPS- 51

Query: 60  VTGPGTGTGTEGKKKRGRPRKYGPDGKLTTALSPMPISASIPLTGEYSAWKRGRGRPVDN 119
                    +E KKKRGRPRKYGP G LT ALSPMPIS+SIPLTGE+SAWKRGRGRPVD+
Sbjct: 52  ---------SEMKKKRGRPRKYGPGGSLTMALSPMPISSSIPLTGEFSAWKRGRGRPVDS 102

Query: 120 TKKSYKYEHESPGEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGT 179
            KK +K E ES GE++AY VGANFTPHV+TVNAGEDVTMK++SFSQQGSRAICILSANG 
Sbjct: 103 FKKQHKSESESAGERVAYSVGANFTPHVITVNAGEDVTMKIISFSQQGSRAICILSANGA 162

Query: 180 ISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGG 239
           ISNVTLRQP SSGGTLTYEGRFEILSLSGS+MPS++GGTKSRSGGMSVSLAGPDGRV+GG
Sbjct: 163 ISNVTLRQPNSSGGTLTYEGRFEILSLSGSFMPSESGGTKSRSGGMSVSLAGPDGRVLGG 222

Query: 240 GLAGFLIAAGPVQVVVGSFLPGHQLEQKHKKQRTELAPIVTPISVSVLSAEEIKGGYSG 298
           GLAG L+AAGPVQV+VGSFLPGHQ EQK KKQR E      P +V+ +  EE  G   G
Sbjct: 223 GLAGLLVAAGPVQVLVGSFLPGHQQEQKPKKQRIEPVQAAIPATVNSMPREETLGANGG 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801443|emb|CAN77019.1| hypothetical protein VITISV_039795 [Vitis vinifera]

 Score =  357 bits (915), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 202/317 (63%), Positives = 232/317 (73%), Gaps = 29/317 (9%)

Query: 1   MEAKEENNITSGVSVKVNEATDGFQTAPRTENPVPFPAPAVTSAAEVSPAP--------- 51
            E +    I SGV+VK  EA D ++ A R+ENP  F    +T+ + V+            
Sbjct: 677 FEERRAEGINSGVTVKGEEAPDTYRVAARSENPSEFGGSTMTAVSPVAAPAPTPATAPAP 736

Query: 52  ----------VSTAVPTLVTGPGTGTGTEGKKKRGRPRKYGPDGKLTTALSPMPISASIP 101
                     VS A+P+          +E KKKRGRPRKYGP G LT ALSPMPIS+SIP
Sbjct: 737 APGSAPTPAPVSVAMPS----------SEMKKKRGRPRKYGPGGSLTMALSPMPISSSIP 786

Query: 102 LTGEYSAWKRGRGRPVDNTKKSYKYEHESPGEKIAYFVGANFTPHVLTVNAGEDVTMKVM 161
           LTGE+SAWKRGRGRPVD+ KK +K E ES GE++AY VGANFTPHV+TVNAGEDVTMK++
Sbjct: 787 LTGEFSAWKRGRGRPVDSFKKQHKSESESAGERVAYSVGANFTPHVITVNAGEDVTMKII 846

Query: 162 SFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSR 221
           SFSQQGSRAICILSANG ISNVTLRQP SSGGTLTYEGRFEILSLSGS+MPS++GGTKSR
Sbjct: 847 SFSQQGSRAICILSANGAISNVTLRQPNSSGGTLTYEGRFEILSLSGSFMPSESGGTKSR 906

Query: 222 SGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKHKKQRTELAPIVTP 281
           SGGMSVSLAGPDGRV+GGGLAG L+AAGPVQV+VGSFLPGHQ EQK KKQR E      P
Sbjct: 907 SGGMSVSLAGPDGRVLGGGLAGLLVAAGPVQVLVGSFLPGHQQEQKPKKQRIEPVQAAIP 966

Query: 282 ISVSVLSAEEIKGGYSG 298
            +V+ +  EE  G   G
Sbjct: 967 ATVNSMPREETLGANGG 983

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460854|ref|XP_004148159.1| PREDICTED: uncharacterized protein LOC101217222 [Cucumis sativus]

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 197/311 (63%), Positives = 225/311 (72%), Gaps = 18/311 (5%)

Query: 1   MEAKEENNITSGVSVKVNEATDGFQTAPRTENPVPFPAPAVTSAAEVSPAPVSTAVPTLV 60
           ME KE     S  +V  +EA D F+ APRTE      A   TS ++V+   V+   P  V
Sbjct: 1   MEEKETG--VSRFTVTNDEALDNFELAPRTE------ALKSTSESKVTEVAVAAPPPGFV 52

Query: 61  TGPGTG------TGTEGKKKRGRPRKYGPDGK--LTTALSPMPISASIPLTGEYSAWKRG 112
               T       + TE KKKRGRPRKYGPDGK  LT ALSPMPIS+SIPLTGE+  WKR 
Sbjct: 53  AATDTPPVSVAVSSTETKKKRGRPRKYGPDGKRSLTLALSPMPISSSIPLTGEFPNWKRD 112

Query: 113 RGRPVDNTKKSYKYEHESPGEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAIC 172
                   KK  ++E E+PG+++AY VGANFTPHV+TVNAGED+TMKVMSFSQQ SRAIC
Sbjct: 113 NEISQAIVKKPQRFEFENPGQRLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAIC 172

Query: 173 ILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGP 232
           ILSANGTISNVTLRQ TSSGGTLTYEGRFEIL+L+GSYMP+ NG TKSR GGMSVSLAG 
Sbjct: 173 ILSANGTISNVTLRQATSSGGTLTYEGRFEILALTGSYMPTQNGATKSRCGGMSVSLAGQ 232

Query: 233 DGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKHKKQRTELAPIVTPISVSVLSAEEI 292
           DGRVVGGGLAG L+AAGPVQ+VVGSFLPGHQ EQK KK R E   I  P  V+ ++ EE+
Sbjct: 233 DGRVVGGGLAGLLVAAGPVQIVVGSFLPGHQQEQKPKKPRNESTTIFFP-PVNTITGEEM 291

Query: 293 KGGYS-GIKPI 302
           K  Y+ G KPI
Sbjct: 292 KAMYAGGNKPI 302

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084126|emb|CBI24514.3| unnamed protein product [Vitis vinifera]

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 201/298 (67%), Positives = 228/298 (76%), Gaps = 21/298 (7%)

Query: 1   MEAKEENNITSGVSVKVNEATDGFQTAPRTENPVPFPAPAVTSAAEVSPAPVSTAVPTLV 60
           ME  E   I SGV+VK  EA D ++ A R+ENP  F    +T+           A+P+  
Sbjct: 1   MEGTE--GINSGVTVKGEEAPDTYRVAARSENPSEFGGSTMTAV---------VAMPS-- 47

Query: 61  TGPGTGTGTEGKKKRGRPRKYGPDGKLTTALSPMPISASIPLTGEYSAWKRGRGRPVDNT 120
                   +E KKKRGRPRKYGP G LT ALSPMPIS+SIPLTGE+SAWKRGRGRPVD+ 
Sbjct: 48  --------SEMKKKRGRPRKYGPGGSLTMALSPMPISSSIPLTGEFSAWKRGRGRPVDSF 99

Query: 121 KKSYKYEHESPGEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTI 180
           KK +K E ES GE++AY VGANFTPHV+TVNAGEDVTMK++SFSQQGSRAICILSANG I
Sbjct: 100 KKQHKSESESAGERVAYSVGANFTPHVITVNAGEDVTMKIISFSQQGSRAICILSANGAI 159

Query: 181 SNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGG 240
           SNVTLRQP SSGGTLTYEGRFEILSLSGS+MPS++GGTKSRSGGMSVSLAGPDGRV+GGG
Sbjct: 160 SNVTLRQPNSSGGTLTYEGRFEILSLSGSFMPSESGGTKSRSGGMSVSLAGPDGRVLGGG 219

Query: 241 LAGFLIAAGPVQVVVGSFLPGHQLEQKHKKQRTELAPIVTPISVSVLSAEEIKGGYSG 298
           LAG L+AAGPVQV+VGSFLPGHQ EQK KKQR E      P +V+ +  EE  G   G
Sbjct: 220 LAGLLVAAGPVQVLVGSFLPGHQQEQKPKKQRIEPVQAAIPATVNSMPREETLGANGG 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451944|ref|XP_004143720.1| PREDICTED: uncharacterized protein LOC101211908 [Cucumis sativus] gi|449488677|ref|XP_004158140.1| PREDICTED: uncharacterized LOC101211908 [Cucumis sativus]

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 189/304 (62%), Positives = 220/304 (72%), Gaps = 18/304 (5%)

Query: 1   MEAKEENNITSGVSVKVNEATDGF-QTAPRTENPVPFPAPAVTSAAEVSPAPVSTAVPTL 59
           ME KE   +  G +VKV++A + F     R EN         ++  E  P     +VPT 
Sbjct: 1   MEEKE-GGVDFGFAVKVSQAPESFGMMDTRPEN--------SSTDGETPPQQPPASVPT- 50

Query: 60  VTGPGTGTGTEGKKKRGRPRKYGPDGKLTTALSPMPISASIPLTGEYSAWKRGRGRPVDN 119
                     +GKKKRGRPRKYGPDG +   LSPMPIS+SIPL GE++ WKRGRGR V++
Sbjct: 51  ------AGAADGKKKRGRPRKYGPDGTVAPTLSPMPISSSIPLAGEFAGWKRGRGRSVES 104

Query: 120 TKKSYKYEHESPGEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGT 179
            KKS K+E+E PG K+A+F GA+FTPHV+TVN GEDV +KVMSFSQQGSRAICILSANG 
Sbjct: 105 IKKSRKFEYEIPGNKVAFFAGADFTPHVITVNIGEDVNLKVMSFSQQGSRAICILSANGM 164

Query: 180 ISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGG 239
           +SNVTLRQ TSSGGTLTYEGRFEILSLSGSYMPS+ GGTKSRSGGMSVSLAGPDGRV+GG
Sbjct: 165 VSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSEIGGTKSRSGGMSVSLAGPDGRVMGG 224

Query: 240 GLAGFLIAAGPVQVVVGSFL-PGHQLEQKHKKQRTELAPIVTPISVSVLSAEEIKGGYSG 298
           GLAG LIAAGPVQVVVGSFL PGHQ E K +K R E     +    ++LS E     + G
Sbjct: 225 GLAGMLIAAGPVQVVVGSFLPPGHQQENKPRKSRMEPTLNASSPPANILSGEGTNEVFGG 284

Query: 299 IKPI 302
           +KPI
Sbjct: 285 VKPI 288

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561759|ref|XP_003549146.1| PREDICTED: uncharacterized protein LOC100803208 [Glycine max]

 Score =  347 bits (890), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 201/307 (65%), Positives = 232/307 (75%), Gaps = 13/307 (4%)

Query: 4   KEENNITSGVSVKVNEATDGFQTAPRTENPVPFPAPAV-TSAAEVSPAPVSTAVPTLVTG 62
           +E    +SG +V + EA   F  A    N V F  P V T A   +PAP     P  V  
Sbjct: 2   EEREIFSSGHAVNLLEAPHSFHVA---LNSVQFSGPTVETPAPAPAPAPAPAPAPVPVIA 58

Query: 63  PGTGTG-TEGKKKRGRPRKYGPDGKLTTALSPMPISASIPLTGEYSAWKRGRGRPVDNTK 121
           P   +G TEGKKKRGRPRKYGPDGK+  ALSPMPISASIP TG++SAWKRGRG+P+++ K
Sbjct: 59  PVMNSGSTEGKKKRGRPRKYGPDGKV--ALSPMPISASIPFTGDFSAWKRGRGKPLESIK 116

Query: 122 KSYKYEHES---PGEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANG 178
           K++K+        G+ IAY VGANFTPH+LTVN GEDVTMK+MSFSQQG RAICILSANG
Sbjct: 117 KTFKFYEAGGAGSGDGIAYSVGANFTPHILTVNDGEDVTMKIMSFSQQGYRAICILSANG 176

Query: 179 TISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVG 238
           TISNVTLRQPTSSGGTLTYEGRFEILSLSGSY+ ++NG TKSRSGGMS+SLAGPDGRV+G
Sbjct: 177 TISNVTLRQPTSSGGTLTYEGRFEILSLSGSYITTENGLTKSRSGGMSISLAGPDGRVMG 236

Query: 239 GGLAGFLIAAGPVQVVVGSFLPGHQLE-QKHKKQRTE-LAPIVTPISVSVLS-AEEIKGG 295
           GGLAG L+AAGPVQVVV SFLPGHQLE QK KK R E +  +  P+ V+  S AEEI+ G
Sbjct: 237 GGLAGLLVAAGPVQVVVASFLPGHQLEQQKPKKPRVEHIISMAAPMHVNPTSAAEEIRIG 296

Query: 296 YSGIKPI 302
             G+KPI
Sbjct: 297 LGGVKPI 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.917	0.685	0.503	1.7e-59
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.592	0.427	0.573	2.9e-58
TAIR|locus:2167988	404	AT5G62260 [Arabidopsis thalian	0.811	0.606	0.496	9.6e-57
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.897	0.761	0.449	4.4e-52
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.937	0.847	0.437	1.3e-50
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.596	0.566	0.584	1.4e-48
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.672	0.578	0.458	9.9e-39
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.612	0.531	0.450	4.4e-36
TAIR|locus:2031321	378	AT1G63470 [Arabidopsis thalian	0.632	0.505	0.420	7.4e-34
TAIR|locus:2098861	354	AT3G61310 [Arabidopsis thalian	0.758	0.646	0.385	1.4e-32

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 148/294 (50%), Positives = 176/294 (59%)

Query:    20 ATDG---FQTAPRTENPVPFPAPAVT--SAAEVSPAPV-STAVP-TLVXXXXXXXXXXXX 72
             A+DG       PR ENP PF  P  T  +AA V+ A   + A P +L             
Sbjct:    27 ASDGGYSMDPPPRPENPNPFLVPPTTVPAAATVAAAVTENAATPFSLTMPTENTSAEQLK 86

Query:    73 XXXXXXXXXXXXXXLTTALSPMPISASIPLTGEYSAWKRGRGRPVDNT--KKSYKYEHE- 129
                           L   LSPMPIS+S+PLT E+   KRGRGR   N   KKS  ++ + 
Sbjct:    87 KKRGRPRKYNPDGTLVVTLSPMPISSSVPLTSEFPPRKRGRGRGKSNRWLKKSQMFQFDR 146

Query:   130 SP------GEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNV 183
             SP      G   A FVGANFTPHVL VNAGEDVTMK+M+FSQQGSRAICILSANG ISNV
Sbjct:   147 SPVDTNLAGVGTADFVGANFTPHVLIVNAGEDVTMKIMTFSQQGSRAICILSANGPISNV 206

Query:   184 TLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVXXXXXX 243
             TLRQ  +SGGTLTYEGRFEILSL+GS+M +D+GGT+SR+GGMSV LAGPDGRV       
Sbjct:   207 TLRQSMTSGGTLTYEGRFEILSLTGSFMQNDSGGTRSRAGGMSVCLAGPDGRVFGGGLAG 266

Query:   244 XXXXXXPVQVVVGSFLPGHQLEQKHKKQRTELAPIVTPISVSV-LSAEEIKGGY 296
                   PVQV+VG+F+ G +  Q    +   L     P S+S  +SAEE K  +
Sbjct:   267 LFLAAGPVQVMVGTFIAGQEQSQLELAKERRLRFGAQPSSISFNISAEERKARF 320

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
 Identities = 109/190 (57%), Positives = 132/190 (69%)

Query:   124 YKYEHESP---GEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTI 180
             +++ + +P   G   A  V  +FTPHVLTVNAGEDVTMK+M+FSQQGSRAICILSANG I
Sbjct:   156 FEFNNNTPTSGGGGPAEIVSPSFTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPI 215

Query:   181 SNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVXXX 240
             SNVTLRQ  +SGGTLTYEG FEILSL+GS++PS++GGT+SR+GGMSVSLAG DGRV    
Sbjct:   216 SNVTLRQSMTSGGTLTYEGHFEILSLTGSFIPSESGGTRSRAGGMSVSLAGQDGRVFGGG 275

Query:   241 XXXXXXXXXPVQVVVGSFLPGH----QLEQKHKKQRTELAPIVTPISVSVLS----AEEI 292
                      PVQV+VGSF+ G     Q +Q+ KKQR E   I T    S +S    AE+ 
Sbjct:   276 LAGLFIAAGPVQVMVGSFIAGQEESQQQQQQIKKQRRERLGIPTTTQASNISFGGSAEDP 335

Query:   293 KGGYSGIKPI 302
             K  Y   KP+
Sbjct:   336 KARYGLNKPV 345

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2167988 AT5G62260 [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 127/256 (49%), Positives = 157/256 (61%)

Query:    35 PFPAPAVTSAAEVSPAPVSTAVPTLVXXXXXXXXXXXXXXXXXXXXXXXXXXLTTALSPM 94
             P P P   S+A V P  V+    T                            L   LSP 
Sbjct:    45 PLPPPPAPSSAPV-PTTVTPGSATASTGSDPTKKKRGRPRKYAPDGSLNPRFLRPTLSPT 103

Query:    95 PISASIPLTGEYSAWKRGRGR----PVDNTKKSYKYEHESPGEK-----IAYFVGANFTP 145
             PIS+SIPL+G+Y  WKRG+ +    P++  KKS+K+E+ SP        ++ +VGANFT 
Sbjct:   104 PISSSIPLSGDYQ-WKRGKAQQQHQPLEFVKKSHKFEYGSPAPTPPLPGLSCYVGANFTT 162

Query:   146 HVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILS 205
             H  TVN GEDVTMKVM +SQQGSRAICILSA G+ISNVTL QPT++GGTLTYEGRFEILS
Sbjct:   163 HQFTVNGGEDVTMKVMPYSQQGSRAICILSATGSISNVTLGQPTNAGGTLTYEGRFEILS 222

Query:   206 LSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVXXXXXXXXXXXXPVQVVVGSFLPGHQLE 265
             LSGS+MP++NGGTK R+GGMS+SLAGP+G +             PVQVV+GSF+  HQ E
Sbjct:   223 LSGSFMPTENGGTKGRAGGMSISLAGPNGNIFGGGLAGMLIAAGPVQVVMGSFIVMHQAE 282

Query:   266 QKHKKQRTELAPIVTP 281
             Q  KK+   +     P
Sbjct:   283 QNQKKKPRVMEAFAPP 298

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 130/289 (44%), Positives = 168/289 (58%)

Query:    17 VNEATDGFQTAPRTENPVPFPAPAVTSAAEVSPAPVSTAVPTLVXXXXXXXXXXXXXXXX 76
             V + ++    +P +  P P P P+    A   P  +ST   T                  
Sbjct:    35 VAQRSESSNQSPTSVTPPP-PQPSSHHTAP-PPLQISTVTTTTTTAAMEGISGGLMKKKR 92

Query:    77 XXXXXXXXXXLTTALSPMPISAS-----IPLTG----EYSAW-KRGRGRPVDNTKKSYKY 126
                          ALSP PIS++     +P       ++SA  KR + +P ++  ++ KY
Sbjct:    93 GRPRKYGPDGTVVALSPKPISSAPAPSHLPPPSSHVIDFSASEKRSKVKPTNSFNRT-KY 151

Query:   127 EH--ESPGEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVT 184
              H  E+ GE     VG NFTPH++TVN GEDVTMK++SFSQQG R+IC+LSANG IS+VT
Sbjct:   152 HHQVENLGEWAPCSVGGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANGVISSVT 211

Query:   185 LRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVXXXXXXX 244
             LRQP SSGGTLTYEGRFEILSLSGS+MP+D+GGT+SR+GGMSVSLA PDGRVV       
Sbjct:   212 LRQPDSSGGTLTYEGRFEILSLSGSFMPNDSGGTRSRTGGMSVSLASPDGRVVGGGLAGL 271

Query:   245 XXXXXPVQVVVGSFLPG--HQLEQKHKKQRTELAPIVTPISVSVLSAEE 291
                  PVQVVVGSFL G  HQ +QK KK + +        ++ + SA +
Sbjct:   272 LVAASPVQVVVGSFLAGTDHQ-DQKPKKNKHDFMLSSPTAAIPISSAAD 319

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 132/302 (43%), Positives = 170/302 (56%)

Query:    12 GVSVKVNEATDGFQTAPRTENPVPFPAPAVTSAAEVSPAPVSTAVPTLVXXXXXXXXXXX 71
             GV+V  + A   F  APR+E       P  + A    P P ++  P+             
Sbjct:    17 GVTVVRSNAPSDFHMAPRSETS---NTPPNSVAPPPPPPPQNSFTPSAAMDGFSSGPIKK 73

Query:    72 XXXXXXXXXXXXXXXLTTALSPMPISASIPLTG---EYSAW--KRGRGRPVDNTKKSY-- 124
                                LSP PIS++ P T    ++S    KRG+ +P   T  S+  
Sbjct:    74 RRGRPRKYGHDGAA---VTLSPNPISSAAPTTSHVIDFSTTSEKRGKMKPATPTPSSFIR 130

Query:   125 -KYEHESPGEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNV 183
              KY+ E+ GE       ANFTPH++TVNAGEDVT +++SFSQQGS AIC+L ANG +S+V
Sbjct:   131 PKYQVENLGEWSPSSAAANFTPHIITVNAGEDVTKRIISFSQQGSLAICVLCANGVVSSV 190

Query:   184 TLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVXXXXXX 243
             TLRQP SSGGTLTYEGRFEILSLSG++MPSD+ GT+SR+GGMSVSLA PDGRVV      
Sbjct:   191 TLRQPDSSGGTLTYEGRFEILSLSGTFMPSDSDGTRSRTGGMSVSLASPDGRVVGGGVAG 250

Query:   244 XXXXXXPVQVVVGSFLPG-HQLEQKHKKQRTEL--APIVTPISVSVLSAEEIKGGYSGIK 300
                   P+QVVVG+FL G +Q EQ  K        +P++ P S +V     I+   S + 
Sbjct:   251 LLVAATPIQVVVGTFLGGTNQQEQTPKPHNHNFMSSPLM-PTSSNVADHRTIRPMTSSL- 308

Query:   301 PI 302
             PI
Sbjct:   309 PI 310

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 114/195 (58%), Positives = 137/195 (70%)

Query:    92 SPMPISASIPLTGEYSAWKRGRGRPVD-NTKKSYK-YEHESPGEK------IAYFVGANF 143
             +P+P S+S+PL       KR RG+    + KK +K     S GE+      +   VG+NF
Sbjct:    70 APLP-SSSVPLVK-----KRVRGKLNGFDMKKMHKTIGFHSSGERFGVGGGVGGGVGSNF 123

Query:   144 TPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEI 203
             TPHV+TVN GED+TM+++SFSQQG RAICILSANG ISNVTLRQP S GGTLTYEGRFEI
Sbjct:   124 TPHVITVNTGEDITMRIISFSQQGPRAICILSANGVISNVTLRQPDSCGGTLTYEGRFEI 183

Query:   204 LSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVXXXXXXXXXXXXPVQVVVGSFLPGHQ 263
             LSLSGS+M ++N G+K RSGGMSVSLAGPDGRVV            P+QVVVGSF+   Q
Sbjct:   184 LSLSGSFMETENQGSKGRSGGMSVSLAGPDGRVVGGGVAGLLIAATPIQVVVGSFITSDQ 243

Query:   264 LE-QKHKKQRTELAP 277
              + QK +KQR E AP
Sbjct:   244 QDHQKPRKQRVEHAP 258

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 100/218 (45%), Positives = 133/218 (61%)

Query:    87 LTTALSP-MP-ISASIPLTGEYSAWKRGRGRPVDNTKKSYKYEHESPGEKIAYFVGANFT 144
             ++  L+P  P  + S P +G     K+ RGRP  ++ K  K +  + G       G  FT
Sbjct:   113 MSLGLNPGAPSFTVSQPSSGGDGGEKK-RGRPPGSSSKRLKLQ--ALGS-----TGIGFT 164

Query:   145 PHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEIL 204
             PHVLTV AGEDV+ K+M+ +  G RA+C+LSANG ISNVTLRQ  +SGGT+TYEGRFEIL
Sbjct:   165 PHVLTVLAGEDVSSKIMALTHNGPRAVCVLSANGAISNVTLRQSATSGGTVTYEGRFEIL 224

Query:   205 SLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVXXXXXXXXXXXXPVQVVVGSFLPGHQL 264
             SLSGS+   +N G +SR+GG+SVSL+ PDG V+            PVQ+VVGSFLP  + 
Sbjct:   225 SLSGSFHLLENNGQRSRTGGLSVSLSSPDGNVLGGSVAGLLIAASPVQIVVGSFLPDGEK 284

Query:   265 EQK-HKKQRTELAPI---VTPISVSVL-SAEEIKGGYS 297
             E K H  Q    +P+   V P  V +  S+ + +G  S
Sbjct:   285 EPKQHVGQMGLSSPVLPRVAPTQVLMTPSSPQSRGTMS 322

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 87/193 (45%), Positives = 119/193 (61%)

Query:    87 LTTALSPMPISASIPLTGEYSAWKRGRGRPVDNTKKSYKYEHESPGEKIAYFVGANFTPH 146
             ++ ALS   +S   P        KRGRGRP  + KK       S GE +    G +FTPH
Sbjct:   113 VSLALSSSSVSTITPNNSN----KRGRGRPPGSGKKQ---RMASVGELMPSSSGMSFTPH 165

Query:   147 VLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSL 206
             V+ V+ GED+  KV++FSQQG RAIC+LSA+G +S  TL QP++S G + YEGRFEIL+L
Sbjct:   166 VIAVSIGEDIASKVIAFSQQGPRAICVLSASGAVSTATLIQPSASPGAIKYEGRFEILAL 225

Query:   207 SGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVXXXXXXXXXXXXPVQVVVGSFLPGHQLEQ 266
             S SY+ + +G  ++R+G +SVSLA PDGRV+            PVQV+VGSF+     + 
Sbjct:   226 STSYIVATDGSFRNRTGNLSVSLASPDGRVIGGAIGGPLIAASPVQVIVGSFIWAAP-KI 284

Query:   267 KHKKQRTELAPIV 279
             K KK+  E + +V
Sbjct:   285 KSKKREEEASEVV 297

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2031321 AT1G63470 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 85/202 (42%), Positives = 120/202 (59%)

Query:    87 LTTALSPMPI----SASIPLTGEYSAWKRGRGRPVDNTKKSYKYEHESPGEKIAYFVGAN 142
             ++  LSPMP     S       + +A KR RGRP    +K       + GE +    G  
Sbjct:   120 VSLGLSPMPCVSKKSKDSSSMSDPNAPKRARGRPPGTGRKQ---RLANLGEWMNTSAGLA 176

Query:   143 FTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFE 202
             F PHV++V +GED+  KV+SFSQ+  RA+CI+S  GT+S+VTLR+P S+  +LT+EGRFE
Sbjct:   177 FAPHVISVGSGEDIVSKVLSFSQKRPRALCIMSGTGTVSSVTLREPASTTPSLTFEGRFE 236

Query:   203 ILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVXXXXXXXXXXXXPVQVVVGSFLPGH 262
             ILSL GSY+ ++ GG+KSR+GG+SVSL+GP+G V+             VQVV  SF+ G 
Sbjct:   237 ILSLGGSYLVNEEGGSKSRTGGLSVSLSGPEGHVIGGGIGMLIAASL-VQVVACSFVYGA 295

Query:   263 QLEQKHKKQRT---ELAPIVTP 281
               +  +   +T   E+ P   P
Sbjct:   296 SAKSNNNNNKTIKQEIKPKQEP 317

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2098861 AT3G61310 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 91/236 (38%), Positives = 118/236 (50%)

Query:    27 APRTENPVPFPAPAVTSAAEVSPA-PV--STAVPTLVXXXXXXXXXXXXXXXXXXXXXXX 83
             +P   NP P P P   S   VSP  PV  S A  +                         
Sbjct:    49 SPFGSNPNPNPNPGGVSTGFVSPPLPVDSSPADSSAAAAGALVAPPSGDTSVKRKRGRPR 108

Query:    84 XXXLTTALSPMPISASIPLTGEYSAWKRGRGRPVDNTKKSYKYEHESPGEKIAYFVGANF 143
                       + +S SI      S  KRGRGRP  + KK       S GE +    G +F
Sbjct:   109 KYGQDGGSVSLALSPSISNVSPNSN-KRGRGRPPGSGKKQ---RLSSIGEMMPSSTGMSF 164

Query:   144 TPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEI 203
             TPHV+ V+ GED+  KV+SFS QG RAIC+LSA+G +S  TL QP  S GT+ YEG FE+
Sbjct:   165 TPHVIVVSIGEDIASKVISFSHQGPRAICVLSASGAVSTATLLQPAPSHGTIIYEGLFEL 224

Query:   204 LSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVXXXXXXXXXXXXPVQVVVGSFL 259
             +SLS SY+ + +    +R+G ++VSLA PDGRV+             VQV+VGSF+
Sbjct:   225 ISLSTSYLNTTDNDYPNRTGSLAVSLASPDGRVIGGGIGGPLIAASQVQVIVGSFI 280

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	302
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	1e-40
cd11378	113	cd11378, DUF296, Domain of unknown function found	1e-35
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	8e-06

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  137 bits (347), Expect = 1e-40
 Identities = 57/123 (46%), Positives = 70/123 (56%), Gaps = 9/123 (7%)

Query: 143 FTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQP---TSSGGTLTYEG 199
             PHVL +  GED+   + +F++Q      +LS  G +SNVTLRQP     S G +T EG
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 200 RFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLA-GFLIAAGPVQVVVGSF 258
           RFEILSLSG+  P         SG + VSLA PDG+VVGG LA G + A G V V   SF
Sbjct: 61  RFEILSLSGTISPGGK-----PSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSF 115

Query: 259 LPG 261
              
Sbjct: 116 ENA 118

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  123 bits (312), Expect = 1e-35
 Identities = 51/118 (43%), Positives = 68/118 (57%), Gaps = 8/118 (6%)

Query: 144 TPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQP---TSSGGTLTYEGR 200
            P VL +  GED+   + +F+++      +LS  G +SN TLR P        T+T+EGR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 201 FEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSF 258
            EILSLSG+  P D       SG + VSLA  DGRV+GG L G L+ AG V+VV+G  
Sbjct: 61  LEILSLSGNISPDDGK----PSGHLHVSLADSDGRVIGGHLLGALV-AGTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 13/129 (10%)

Query: 147 VLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLR---QPTSSGGTLTYEGRFEI 203
            L ++ GED+  ++ +F++Q      +++A G + +  LR          T+      E+
Sbjct: 13  ALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEV 72

Query: 204 LSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAGF-LIAAGPVQVVVGSFLPGH 262
           LSL G+    D          +  +L   +G  +GG L    +     V +     LPG 
Sbjct: 73  LSLLGNIALDDP------FVHLHAALGDENGITLGGHLLEGEVFPTAEVFIRE---LPGE 123

Query: 263 QLEQKHKKQ 271
              ++    
Sbjct: 124 LFRREFDPT 132

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.96
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.93
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.32
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.27
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	84.08

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.96  E-value=6.5e-29  Score=205.94  Aligned_cols=111  Identities=32%  Similarity=0.469  Sum_probs=98.8

Q ss_pred             ceeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCC--CCCeeeeecceeEEEeeeeeccCCCCCCCC
Q 045394          143 FTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTS--SGGTLTYEGRFEILSLSGSYMPSDNGGTKS  220 (302)
Q Consensus       143 ~~phVIrV~~GEDIve~I~~Faq~~~~a~~ILSAiGaVSnVtLr~~~~--~~~~~t~eG~fEILSLsGsis~~e~g~~~~  220 (302)
                      ||+|++||++||||+++|++||++..+.+|+++++|+|++|+|++++.  ....++++|+|||+||+|||+..++    +
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g----~   76 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG----K   76 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT----E
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC----C
Confidence            799999999999999999999998888888889999999999999954  3368999999999999999998444    5


Q ss_pred             CCCceEEEEeCCCCcEEeeecCCceEEecceEEEEEEc
Q 045394          221 RSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSF  258 (302)
Q Consensus       221 ~~~HLHISLA~~dGqV~GGHL~g~lIAastVEVVv~sF  258 (302)
                      ++.|||++|+|.||+++||||..+.+ ..++||+|.++
T Consensus        77 ~~~HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~  113 (120)
T PF03479_consen   77 PFVHLHISLADPDGQVFGGHLLEGTV-FATAEVVITEL  113 (120)
T ss_dssp             EEEEEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEE
T ss_pred             CcceEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEe
Confidence            89999999999999999999997766 67999999984

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.93  E-value=5.3e-25  Score=189.40  Aligned_cols=122  Identities=20%  Similarity=0.323  Sum_probs=108.7

Q ss_pred             CCCceeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeccCCCC
Q 045394          140 GANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSG---GTLTYEGRFEILSLSGSYMPSDNG  216 (302)
Q Consensus       140 g~~~~phVIrV~~GEDIve~I~~Faq~~~~a~~ILSAiGaVSnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~e~g  216 (302)
                      ...-+.+++||++|||+++.|.+||+++.+.+++++|+|++++++|++++.++   .++++.|+||||||.|||..++  
T Consensus         6 ~~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~--   83 (141)
T COG1661           6 SSSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD--   83 (141)
T ss_pred             cccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC--
Confidence            34568999999999999999999999988888999999999999999999654   5899999999999999999987  


Q ss_pred             CCCCCCCceEEEEeCCCCcEEeeecCCceEEecceEEEEEEcCCCcchhhccc
Q 045394          217 GTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKHK  269 (302)
Q Consensus       217 ~~~~~~~HLHISLA~~dGqV~GGHL~g~lIAastVEVVv~sF~~~~~~~~~~~  269 (302)
                          |+.|||++|++++|+++||||.++++.. ++||+|.+. ....+.|++.
T Consensus        84 ----p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el-~~~~~~R~~d  130 (141)
T COG1661          84 ----PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIREL-PGELFRREFD  130 (141)
T ss_pred             ----CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEc-cccceeEecC
Confidence                7899999999999999999999998765 999999994 4444555543

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.32  E-value=0.0013  Score=35.96  Aligned_cols=12  Identities=67%  Similarity=1.085  Sum_probs=4.3

Q ss_pred             cccCCCCCCCCC
Q 045394           72 KKKRGRPRKYGP   83 (302)
Q Consensus        72 kkKRGRPrkY~~   83 (302)
                      +|+||||+|+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            589999999864

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.27  E-value=0.0022  Score=41.17  Aligned_cols=15  Identities=60%  Similarity=0.875  Sum_probs=13.2

Q ss_pred             cccCCCCCCCCCCCC
Q 045394           72 KKKRGRPRKYGPDGK   86 (302)
Q Consensus        72 kkKRGRPrkY~~dg~   86 (302)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999998865

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=84.08  E-value=0.36  Score=44.22  Aligned_cols=13  Identities=62%  Similarity=1.107  Sum_probs=11.0

Q ss_pred             CcccccCCCCCCC
Q 045394           69 TEGKKKRGRPRKY   81 (302)
Q Consensus        69 ~~~kkKRGRPrkY   81 (302)
                      ..+|||||||||-
T Consensus        65 sdAKRKRGRPRKK   77 (219)
T PF14621_consen   65 SDAKRKRGRPRKK   77 (219)
T ss_pred             chhhhhcCCCccC
Confidence            3689999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	5e-30
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	3e-27
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	4e-19
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	9e-09
3htn_A	149	Putative DNA binding protein; DUF269 family protei	7e-08
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	3e-07

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score =  110 bits (276), Expect = 5e-30
 Identities = 27/141 (19%), Positives = 63/141 (44%), Gaps = 11/141 (7%)

Query: 129 ESPGEKIAYFVGANFTPHVLTVNAGEDVTMKVMSFSQQ-GSRAICILSANGTISNVTLRQ 187
           +     +++   +    + L +  G++V  ++ +F QQ   RA  I    G++++V LR 
Sbjct: 4   DPNSMTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRY 63

Query: 188 PTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAGFLIA 247
                 T +  G FE++SL+G+   +           + ++++ P G ++GG +      
Sbjct: 64  A-GQEATTSLTGTFEVISLNGTLELTGE--------HLHLAVSDPYGVMLGGHMMPGCTV 114

Query: 248 AGPVQVVVGSFLPGHQLEQKH 268
              +++V+G   P     ++ 
Sbjct: 115 RTTLELVIGEL-PALTFSRQP 134

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score =  102 bits (256), Expect = 3e-27
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 11/125 (8%)

Query: 145 PHVLTVNAGEDVTMKVMSF-SQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEI 203
              L +  G D+  +++    Q    A  I S  G +S + +R    S  TL     FEI
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLA-DSVSTLQVSAPFEI 62

Query: 204 LSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQ 263
           LSLSG+               + +++A   GRV GG L    +     ++++  + P H 
Sbjct: 63  LSLSGTLTYQHCH--------LHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY-PQHH 113

Query: 264 LEQKH 268
             ++ 
Sbjct: 114 FTREF 118

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 81.2 bits (200), Expect = 4e-19
 Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 10/132 (7%)

Query: 139 VGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLR---QPTSSGGTL 195
           + +    ++  V  GE++   + +F ++      I++  GT+ N  +    +       +
Sbjct: 5   MFSLGRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVI 64

Query: 196 TYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVV 255
             +G +E++SL G+    D            VSL   +G V GG L    +    + +  
Sbjct: 65  PLKGSYELISLIGNVSLKDGE----PFVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQE 120

Query: 256 GSFLPGHQLEQK 267
              L G ++E+K
Sbjct: 121 ---LKGEKIERK 129

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 52.3 bits (125), Expect = 9e-09
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 137 YFVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLR---QPTSSGG 193
            F        +L ++ G+D+  ++  F ++       +SA G + +  +    Q      
Sbjct: 3   VFEFEVGKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYV 62

Query: 194 TLTYEGRFEILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQV 253
                   EILSLSG+    D+         + V L G DG V GG L    + A  V V
Sbjct: 63  KKELMEPLEILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFV 117

Query: 254 VV 255
           + 
Sbjct: 118 LP 119

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 50.0 bits (119), Expect = 7e-08
 Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 146 HVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLR---QPTSSGGTLTYEGRFE 202
           +++++N   ++   + +F ++       ++  G I  +TLR     T +    T+  + E
Sbjct: 18  YIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQME 77

Query: 203 ILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAG 243
           I +L+G+    +          + +++   D   + G L  
Sbjct: 78  ISNLTGNISSMNEQ----VYLHLHITVGRSDYSALAGHLLS 114

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 6/117 (5%)

Query: 144 TPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLR--QPTSSGGTLTYEGRF 201
           T +++ +  G++V   +   ++            G +S  T                   
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 202 EILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSF 258
           E+ +++GS    +       S     ++     +  GG L G  +  G  ++ V  +
Sbjct: 73  EMANMTGSIAWKEGK----PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.95
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.95
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.95
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.94
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.94
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.92
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	96.35

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.95  E-value=2.5e-27  Score=203.39  Aligned_cols=121  Identities=21%  Similarity=0.391  Sum_probs=107.6

Q ss_pred             ccCCCceeEEEEecCCChHHHHHHHHHH-hCCccEEEEEeeceeeeEEEeCCCCCCCeeeeecceeEEEeeeeeccCCCC
Q 045394          138 FVGANFTPHVLTVNAGEDVTMKVMSFSQ-QGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNG  216 (302)
Q Consensus       138 ~~g~~~~phVIrV~~GEDIve~I~~Faq-~~~~a~~ILSAiGaVSnVtLr~~~~~~~~~t~eG~fEILSLsGsis~~e~g  216 (302)
                      +....+++|++||++||||+++|.+||+ ++.+++||++++|++++++|+|++... +++|+|+|||+||+|||++.   
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~---   88 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT---   88 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT---
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC---
Confidence            4667899999999999999999999995 577789999999999999999999874 78899999999999999995   


Q ss_pred             CCCCCCCceEEEEeCCCCcEEeeecCCceEEecceEEEEEEcCCCcchhhcc
Q 045394          217 GTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKH  268 (302)
Q Consensus       217 ~~~~~~~HLHISLA~~dGqV~GGHL~g~lIAastVEVVv~sF~~~~~~~~~~  268 (302)
                           ..|||++|+|.||+++||||++++++..++||+|.+| .+..++|++
T Consensus        89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~-~~~~~~R~~  134 (154)
T 2hx0_A           89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL-PALTFSRQP  134 (154)
T ss_dssp             -----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEEC-TTEEEEEEE
T ss_pred             -----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEc-cCceEEEec
Confidence                 2799999999999999999998777778999999985 444566654

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.95  E-value=3.3e-27  Score=200.08  Aligned_cols=117  Identities=26%  Similarity=0.390  Sum_probs=103.1

Q ss_pred             CceeEEEEecCCChHHHHHHHHHHh-CCccEEEEEeeceeeeEEEeCCCCCCCeeeeecceeEEEeeeeeccCCCCCCCC
Q 045394          142 NFTPHVLTVNAGEDVTMKVMSFSQQ-GSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGGTKS  220 (302)
Q Consensus       142 ~~~phVIrV~~GEDIve~I~~Faq~-~~~a~~ILSAiGaVSnVtLr~~~~~~~~~t~eG~fEILSLsGsis~~e~g~~~~  220 (302)
                      .|++|++||++||||+++|.+||++ +.+++||++++|++++++|++++... +++++|+|||+||+|||++.       
T Consensus         1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-------   72 (142)
T 2p6y_A            1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-------   72 (142)
T ss_dssp             CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-------
T ss_pred             CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-------
Confidence            3899999999999999999999975 66689999999999999999999874 78899999999999999984       


Q ss_pred             CCCceEEEEeCCCCcEEeeecCCceEEecceEEEEEEcCCCcchhhcc
Q 045394          221 RSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKH  268 (302)
Q Consensus       221 ~~~HLHISLA~~dGqV~GGHL~g~lIAastVEVVv~sF~~~~~~~~~~  268 (302)
                       ..|||++|+|.||+++||||+++++++.++||+|.+| .+..++|++
T Consensus        73 -~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~-~~~~~~R~~  118 (142)
T 2p6y_A           73 -HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY-PQHHFTREF  118 (142)
T ss_dssp             -CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEEC-TTEEEEEEE
T ss_pred             -CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEc-cCCeEEEee
Confidence             2699999999999999999998777788999999985 444566654

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.95  E-value=7.1e-28  Score=203.73  Aligned_cols=119  Identities=21%  Similarity=0.307  Sum_probs=103.8

Q ss_pred             ceeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeccCCCCCCC
Q 045394          143 FTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSG---GTLTYEGRFEILSLSGSYMPSDNGGTK  219 (302)
Q Consensus       143 ~~phVIrV~~GEDIve~I~~Faq~~~~a~~ILSAiGaVSnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~e~g~~~  219 (302)
                      -++|++||++||||+++|++||+++.+..|+++++|++++|+|+|++.+.   ..++++|+|||+||+|||++.++    
T Consensus         9 gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g----   84 (143)
T 2dt4_A            9 GRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDG----   84 (143)
T ss_dssp             EEEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETT----
T ss_pred             CCEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCC----
Confidence            47999999999999999999998665555556999999999999998764   36889999999999999999655    


Q ss_pred             CCCCceEEEEeCCCCcEEeeecCCceEEecceEEEEEEcCCCcchhhcc
Q 045394          220 SRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKH  268 (302)
Q Consensus       220 ~~~~HLHISLA~~dGqV~GGHL~g~lIAastVEVVv~sF~~~~~~~~~~  268 (302)
                      .++.|||++|+|.||+++||||..++ +. ++||+|.+| .+..++|.+
T Consensus        85 ~p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~-~~~~~~R~~  130 (143)
T 2dt4_A           85 EPFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQEL-KGEKIERKP  130 (143)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEE-EESCCEEBC
T ss_pred             CceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEc-CCCeEEEeC
Confidence            48999999999999999999999888 56 999999986 444567766

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.94  E-value=2.8e-27  Score=202.12  Aligned_cols=118  Identities=16%  Similarity=0.255  Sum_probs=103.8

Q ss_pred             ceeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeccCCCCCCC
Q 045394          143 FTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSG---GTLTYEGRFEILSLSGSYMPSDNGGTK  219 (302)
Q Consensus       143 ~~phVIrV~~GEDIve~I~~Faq~~~~a~~ILSAiGaVSnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~e~g~~~  219 (302)
                      -+.|++||++||||+++|.+||+++.+..|+++++|++++|+|++++.+.   ..++++|+|||+||+|||++.++    
T Consensus        15 gr~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG----   90 (149)
T 3htn_A           15 GNKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE----   90 (149)
T ss_dssp             TTEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----
T ss_pred             CCEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----
Confidence            38999999999999999999998777776667999999999999998764   37899999999999999999755    


Q ss_pred             CCCCceEEEEeCCCCcEEeeecCCceEEecceEEEEEEcCCCcchhhc
Q 045394          220 SRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQK  267 (302)
Q Consensus       220 ~~~~HLHISLA~~dGqV~GGHL~g~lIAastVEVVv~sF~~~~~~~~~  267 (302)
                      .++.|||++|+|.||+++||||..+ ++..++||+|.++..  .++|+
T Consensus        91 ~p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~--~~~R~  135 (149)
T 3htn_A           91 QVYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE--RISRT  135 (149)
T ss_dssp             EEEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS--CCEEE
T ss_pred             CceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC--eeEEe
Confidence            4899999999999999999999998 567899999999633  45554

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.94  E-value=5.8e-27  Score=198.73  Aligned_cols=119  Identities=23%  Similarity=0.244  Sum_probs=102.2

Q ss_pred             CceeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeccCCCCCC
Q 045394          142 NFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSG---GTLTYEGRFEILSLSGSYMPSDNGGT  218 (302)
Q Consensus       142 ~~~phVIrV~~GEDIve~I~~Faq~~~~a~~ILSAiGaVSnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~e~g~~  218 (302)
                      .-++|++||++||||+++|++||++..+..|+++++|+|++++|++++...   ..++++|+|||+||+|||++.++   
T Consensus         8 ~gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg---   84 (146)
T 2h6l_A            8 VGKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS---   84 (146)
T ss_dssp             CCEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT---
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCC---
Confidence            347999999999999999999997654544445999999999999998875   37899999999999999999655   


Q ss_pred             CCCCCceEEEEeCCCCcEEeeecCCceEEecceEEEEEEcCCCcchhhcc
Q 045394          219 KSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKH  268 (302)
Q Consensus       219 ~~~~~HLHISLA~~dGqV~GGHL~g~lIAastVEVVv~sF~~~~~~~~~~  268 (302)
                       .++.|||++|+ .||+++||||.+++|  .++||+|.+| .+..++|++
T Consensus        85 -~p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~-~~~~~~R~~  129 (146)
T 2h6l_A           85 -KPFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPL-SGEAPERAF  129 (146)
T ss_dssp             -EEEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEEC-BSCCCBEEE
T ss_pred             -CceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEc-CCCcEEEeE
Confidence             48999999999 999999999999885  6999999996 444566654

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.92  E-value=1e-24  Score=185.75  Aligned_cols=118  Identities=16%  Similarity=0.229  Sum_probs=102.1

Q ss_pred             eeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeccCCCCCCCC
Q 045394          144 TPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSG---GTLTYEGRFEILSLSGSYMPSDNGGTKS  220 (302)
Q Consensus       144 ~phVIrV~~GEDIve~I~~Faq~~~~a~~ILSAiGaVSnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~e~g~~~~  220 (302)
                      +.+++||++||||+++|.+||++..+..++++++|++++++|++++.+.   ...+++ ++||+||+|||+..|+    .
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~   87 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K   87 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence            6699999999999999999999888888888999999999999998764   256788 8999999999998665    5


Q ss_pred             CCCceEEEEeCCCCcEEeeecCCceEEecceEEEEEEcCCCcchhhcc
Q 045394          221 RSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKH  268 (302)
Q Consensus       221 ~~~HLHISLA~~dGqV~GGHL~g~lIAastVEVVv~sF~~~~~~~~~~  268 (302)
                      ++.|||++|+|.||+++||||..+.+...|+||+|..+  +..+.|++
T Consensus        88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~--~~~~~R~~  133 (147)
T 3hwu_A           88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY--PQRLDRFV  133 (147)
T ss_dssp             EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEE--SSCCBEEE
T ss_pred             ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEc--CCeEEEEE
Confidence            89999999999999999999998855435999999974  33555543

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=96.35  E-value=0.0016  Score=40.62  Aligned_cols=16  Identities=44%  Similarity=0.553  Sum_probs=14.2

Q ss_pred             ccCCCCCCCCCCcCCC
Q 045394          109 WKRGRGRPVDNTKKSY  124 (302)
Q Consensus       109 ~kr~RGRP~gS~~k~k  124 (302)
                      .||+||||.|||||.-
T Consensus         4 pKrpRgRpkGSKNk~~   19 (26)
T 2ezd_A            4 PKRPRGRPKGSKNKGA   19 (26)
T ss_dssp             CCCCSSCCTTCCCCSC
T ss_pred             CcCCCCCcCcccccCc
Confidence            5999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	5e-26
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	3e-18

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 98.0 bits (244), Expect = 5e-26
 Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 11/124 (8%)

Query: 146 HVLTVNAGEDVTMKVMSFS-QQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEIL 204
           + L +  G++V  ++ +F  Q   RA  I    G++++V LR       T +  G FE++
Sbjct: 9   YALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYA-GQEATTSLTGTFEVI 67

Query: 205 SLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQL 264
           SL+G+   +           + ++++ P G ++GG +         +++V+G   P    
Sbjct: 68  SLNGTLELTGEH--------LHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL-PALTF 118

Query: 265 EQKH 268
            ++ 
Sbjct: 119 SRQP 122

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 77.3 bits (190), Expect = 3e-18
 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 11/126 (8%)

Query: 146 HVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLR---QPTSSGGTLTYEGRFE 202
            +L ++ G+D+  ++  F ++       +SA G + +  +    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 203 ILSLSGSYMPSDNGGTKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGH 262
           ILSLSG+    D+         + V L G DG V GG L    + A  V V+    L G 
Sbjct: 72  ILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP---LSGE 123

Query: 263 QLEQKH 268
             E+  
Sbjct: 124 APERAF 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.95
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.92

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=4.9e-28  Score=202.01  Aligned_cols=120  Identities=22%  Similarity=0.394  Sum_probs=107.5

Q ss_pred             cCCCceeEEEEecCCChHHHHHHHHHH-hCCccEEEEEeeceeeeEEEeCCCCCCCeeeeecceeEEEeeeeeccCCCCC
Q 045394          139 VGANFTPHVLTVNAGEDVTMKVMSFSQ-QGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSDNGG  217 (302)
Q Consensus       139 ~g~~~~phVIrV~~GEDIve~I~~Faq-~~~~a~~ILSAiGaVSnVtLr~~~~~~~~~t~eG~fEILSLsGsis~~e~g~  217 (302)
                      +++..|.|++||++||||+++|.+||+ ++.+++||++++|++++|+|++++.. ....++|+|||+||+|||...+   
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~-~~~~~~g~~Ei~sl~G~I~~~~---   77 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQE-ATTSLTGTFEVISLNGTLELTG---   77 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCS-SCEEEEEEEEEEEEEEEEETTE---
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCC-CcEEecCcEEEEEEEEEeccCC---
Confidence            356889999999999999999999995 67789999999999999999999876 5778999999999999998865   


Q ss_pred             CCCCCCceEEEEeCCCCcEEeeecCCceEEecceEEEEEEcCCCcchhhcc
Q 045394          218 TKSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKH  268 (302)
Q Consensus       218 ~~~~~~HLHISLA~~dGqV~GGHL~g~lIAastVEVVv~sF~~~~~~~~~~  268 (302)
                           .|||++|+|.||+++||||+++++++.++||+|.+| .+..++|+.
T Consensus        78 -----~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l-~~~~~~R~~  122 (136)
T d2hx0a1          78 -----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGEL-PALTFSRQP  122 (136)
T ss_dssp             -----EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEEC-TTEEEEEEE
T ss_pred             -----CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEc-cCCceEEcc
Confidence                 499999999999999999999989999999999996 455555543

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=2.4e-25  Score=184.77  Aligned_cols=119  Identities=23%  Similarity=0.251  Sum_probs=103.1

Q ss_pred             CceeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeceeeeEEEeCCCCCC---CeeeeecceeEEEeeeeeccCCCCCC
Q 045394          142 NFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSG---GTLTYEGRFEILSLSGSYMPSDNGGT  218 (302)
Q Consensus       142 ~~~phVIrV~~GEDIve~I~~Faq~~~~a~~ILSAiGaVSnVtLr~~~~~~---~~~t~eG~fEILSLsGsis~~e~g~~  218 (302)
                      .-|.|++||++||||+++|.+||++..+.+|+++++|++++++|++++...   ..+.++|+|||+||+|||...++   
T Consensus         8 ~gr~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g---   84 (138)
T d2h6la1           8 VGKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS---   84 (138)
T ss_dssp             CCEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT---
T ss_pred             CCCEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCC---
Confidence            348999999999999999999998888888899999999999999988765   36899999999999999998776   


Q ss_pred             CCCCCceEEEEeCCCCcEEeeecCCceEEecceEEEEEEcCCCcchhhcc
Q 045394          219 KSRSGGMSVSLAGPDGRVVGGGLAGFLIAAGPVQVVVGSFLPGHQLEQKH  268 (302)
Q Consensus       219 ~~~~~HLHISLA~~dGqV~GGHL~g~lIAastVEVVv~sF~~~~~~~~~~  268 (302)
                       .++.|+|+++++ ||+++||||..+.+.  ++|+++.++ .+..++|.+
T Consensus        85 -~p~~HlH~~~~~-~g~~~gGHl~~~~v~--~~e~~i~~~-~~~~~~R~~  129 (138)
T d2h6la1          85 -KPFCHIHVLLGK-DGEVYGGHLFSAEVF--ACEVFVLPL-SGEAPERAF  129 (138)
T ss_dssp             -EEEEEEEEEEEE-BTEEEEEEEEEEEEE--EEEEEEEEC-BSCCCBEEE
T ss_pred             -CcEEEEEEEECC-CCCEEEEEeCccEEE--EEEEEEEEe-cCCceEEec
Confidence             489999999997 799999999988654  578888884 455555553