Citrus Sinensis ID: 045396

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MAKLNPSFLSLTLLTIFLTIASAHVFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEITDPDAKKPDDWDDEEDGEWTAPTIPNPEYKGPWKPKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKHKDAEKAAFDEAEKKREEEESKDAPDSDAEDNDDDDTEDDDDADAETKSDSSSGDADKDVHVGFPTC
ccccccHHHHHHHHHHHHccccEEEEEEEcccccccccEEEcccccccccccEEEEEccccccccccccEEEcccccccEEcccccccccccccEEEEEEEEccccccccccEEEccccccccccccccccEEEEEccccccccccEEEEEEccccccccccccccccccccccEEEEEEcccccEEEEEccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccEEEEEEEcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHccccEEEEEEEccccccccEEEEcccccccccEEEEEEcccccccccccccEEccccEEEEEEcccccccccccEEEEEEEEEEccccccccEEEEEccccccHHHccccccEEEEEccccccccccEEEEEEEEcccccEEEEEccccccccEEEEEEEEcccccEEEEEcccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccEEccEEEEccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHcccccccccc
maklnpsflSLTLLTIFLTIASAHVFFeerfddgwesrwvtsdwkkdentagewnytagkwngdpndkgiqtsedyRFYAisaefpefsnkdktLVFQFSVKHeqkldcgggymkllsgevdqkkfggdtpysimfgpdicgystKKVHAILTYngtnklikkevpcetdqlthvytfilrpdatysILIDNaekqsgslysdwdllppktikdpdakkpedwddkeyipdpedkkpegyddipkeitdpdakkpddwddeedgewtaptipnpeykgpwkpkddpdlyvypnlkYVGIELWQvksgtmfdnvlvsddPEYAKKLAEETWGKHKDAEKAAFDEAEKKReeeeskdapdsdaednddddteddddadaetksdsssgdadkdvhvgfptc
MAKLNPSFLSLTLLTIFLTIASAHVFFEERFDDGWESRWVTsdwkkdentagewnytagkwngdpndKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQsgslysdwdllppktikdpdakkpedwddkeyipdpedkkpegyddipkeitdpdakkpddwddeedgewtaptipnpeykgpwkPKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAeetwgkhkdaEKAAFdeaekkreeeeskdapdsdaednddddteDDDDADaetksdsssgdadkdvhvgfptc
MAKLNPsflsltlltifltiasaHVFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEItdpdakkpddwddeedgewtaPTIPNPEYKGPWKPKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKHkdaekaafdeaekkreeeeskdapdsdaednddddteddddadaetksdsssgdadkdVHVGFPTC
*******FLSLTLLTIFLTIASAHVFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQSGSLYSDWDLL******************************************************************************PDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDD*********************************************************************************
********LSLTLLTIFLTIASAHVFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQSGSLYSDWDLLPPKTI***************YIPDPEDKKPEGYDDIPKEITDPDAKKPDDWDDEEDGEWTAPTIPNPEYKGPWKPKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKH*************************************************************GFPT*
MAKLNPSFLSLTLLTIFLTIASAHVFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEITDPDA************EWTAPTIPNPEYKGPWKPKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEE*************************************************************KDVHVGFPTC
*AKLNPSFLSLTLLTIFLTIASAHVFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEITDPDAKKPDDWDDEEDGEWTAPTIPNPEYKGPWKPKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKHKDAEKAAFDEAEKKR***************************************************
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAKLNPSFLSLTLLTIFLTIASAHVFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEITDPDAKKPDDWDDEEDGEWTAPTIPNPEYKGPWKPKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKHxxxxxxxxxxxxxxxxxxxxxDAPDSDAEDNDDDDTEDDDDADAETKSDSSSGDADKDVHVGFPTC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query399 2.2.26 [Sep-21-2011]
O04151425 Calreticulin-1 OS=Arabido yes no 0.892 0.837 0.823 1e-164
Q38858424 Calreticulin-2 OS=Arabido no no 0.892 0.839 0.802 1e-160
Q40401416 Calreticulin OS=Nicotiana N/A no 0.834 0.800 0.808 1e-160
O81919416 Calreticulin OS=Beta vulg N/A no 0.809 0.776 0.834 1e-159
Q9XF98421 Calreticulin OS=Prunus ar N/A no 0.854 0.809 0.787 1e-159
Q9ZPP1416 Calreticulin OS=Berberis N/A no 0.902 0.865 0.793 1e-159
P93508415 Calreticulin OS=Ricinus c N/A no 0.791 0.761 0.835 1e-155
Q9SLY8424 Calreticulin OS=Oryza sat no no 0.802 0.754 0.783 1e-148
Q9SP22420 Calreticulin OS=Zea mays N/A no 0.799 0.759 0.753 1e-141
O04153424 Calreticulin-3 OS=Arabido no no 0.877 0.825 0.562 1e-124
>sp|O04151|CALR1_ARATH Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  577 bits (1488), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 312/379 (82%), Positives = 329/379 (86%), Gaps = 23/379 (6%)

Query: 1   MAKLNPSFLSLTLLTIFLTIASAHVFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGK 60
           MAKLNP F+SL L  + + I SA V FEE+F+DGWE RWV SDWKKD+NTAGEW +TAG 
Sbjct: 1   MAKLNPKFISLILFAL-VVIVSAEVIFEEKFEDGWEKRWVKSDWKKDDNTAGEWKHTAGN 59

Query: 61  WNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGE 120
           W+GD NDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLS +
Sbjct: 60  WSGDANDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSDD 119

Query: 121 VDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFIL 180
           VDQ KFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTN LIKKEVPCETDQLTHVYTF+L
Sbjct: 120 VDQTKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNHLIKKEVPCETDQLTHVYTFVL 179

Query: 181 RPDATYSILIDNAEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGY 240
           RPDATYSILIDN EKQ+GSLYSDWDLLP K IKDP AKKPEDWDDKEYIPDPED KP GY
Sbjct: 180 RPDATYSILIDNVEKQTGSLYSDWDLLPAKKIKDPSAKKPEDWDDKEYIPDPEDTKPAGY 239

Query: 241 DDIPKEITDPDAKKPDDWDDEEDGEWTAPTIPNPEYKGPWKP------------------ 282
           DDIPKEI D DAKKP+DWDDEEDGEWTAPTIPNPEY G WKP                  
Sbjct: 240 DDIPKEIPDTDAKKPEDWDDEEDGEWTAPTIPNPEYNGEWKPKKIKNPAYKGKWKAPMID 299

Query: 283 ----KDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKHKDAEK 338
               KDDP+LYV+P LKYVG+ELWQVKSG++FDNVLVSDDPEYAKKLAEETWGKHKDAEK
Sbjct: 300 NPEFKDDPELYVFPKLKYVGVELWQVKSGSLFDNVLVSDDPEYAKKLAEETWGKHKDAEK 359

Query: 339 AAFDEAEKKREEEESKDAP 357
           AAFDEAEKKREEEESKDAP
Sbjct: 360 AAFDEAEKKREEEESKDAP 378
Molecular calcium-binding chaperone promoting folding, oligomeric assembly and quality control in the ER via the calreticulin/calnexin cycle. This lectin may interact transiently with almost all of the monoglucosylated glycoproteins that are synthesized in the ER.
Arabidopsis thaliana (taxid: 3702)
>sp|Q38858|CALR2_ARATH Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3 Back     alignment and function description
>sp|Q40401|CALR_NICPL Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1 Back     alignment and function description
>sp|O81919|CALR_BETVU Calreticulin OS=Beta vulgaris PE=2 SV=1 Back     alignment and function description
>sp|Q9XF98|CALR_PRUAR Calreticulin OS=Prunus armeniaca PE=2 SV=1 Back     alignment and function description
>sp|Q9ZPP1|CALR_BERST Calreticulin OS=Berberis stolonifera PE=2 SV=1 Back     alignment and function description
>sp|P93508|CALR_RICCO Calreticulin OS=Ricinus communis PE=2 SV=1 Back     alignment and function description
>sp|Q9SLY8|CALR_ORYSJ Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2 Back     alignment and function description
>sp|Q9SP22|CALR_MAIZE Calreticulin OS=Zea mays GN=CRT PE=2 SV=1 Back     alignment and function description
>sp|O04153|CALR3_ARATH Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query399
224122952414 predicted protein [Populus trichocarpa] 0.967 0.932 0.781 1e-169
197717740416 calreticulin [Nicotiana tabacum] 0.834 0.800 0.806 1e-166
297848142418 predicted protein [Arabidopsis lyrata su 0.932 0.889 0.756 1e-164
225437549419 PREDICTED: calreticulin [Vitis vinifera] 0.964 0.918 0.773 1e-164
449490831423 PREDICTED: LOW QUALITY PROTEIN: calretic 0.849 0.801 0.785 1e-163
15223517425 calreticulin-1 [Arabidopsis thaliana] gi 0.892 0.837 0.823 1e-162
79320099424 calreticulin-1 [Arabidopsis thaliana] gi 0.854 0.804 0.815 1e-162
227202752411 AT1G56340 [Arabidopsis thaliana] 0.854 0.829 0.815 1e-161
9858814427 calreticulin [Pinus taeda] 0.837 0.782 0.784 1e-161
732893389 tobacco calretulin [Nicotiana tabacum] 0.779 0.799 0.834 1e-160
>gi|224122952|ref|XP_002318957.1| predicted protein [Populus trichocarpa] gi|118485765|gb|ABK94732.1| unknown [Populus trichocarpa] gi|222857333|gb|EEE94880.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 322/412 (78%), Positives = 356/412 (86%), Gaps = 26/412 (6%)

Query: 5   NPSFLSLTLLTIFLTIASAHVFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGD 64
           NP  + L L ++F  IASA VFFEERF+DGWE+ WV SDWKKDENTAG WNYT+GKWNGD
Sbjct: 3   NPKIIPLILFSLF-AIASAKVFFEERFEDGWENSWVVSDWKKDENTAGVWNYTSGKWNGD 61

Query: 65  PNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQK 124
           PNDKGIQTSEDYRFYAISAEFP+FSNKD+TLVFQFSVKHEQKLDCGGGYMKLLSGEVDQK
Sbjct: 62  PNDKGIQTSEDYRFYAISAEFPKFSNKDQTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQK 121

Query: 125 KFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDA 184
           KFGGDTPYSIMFGPDICGYSTKKVHAIL YN  N LIKKEVPCETDQL+HVYT I+RPDA
Sbjct: 122 KFGGDTPYSIMFGPDICGYSTKKVHAILNYNEANHLIKKEVPCETDQLSHVYTLIIRPDA 181

Query: 185 TYSILIDNAEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIP 244
           TYSILIDN EKQ+GSLYSDWDLLPPKTIKDP+AKKPEDWDDKEYI DPEDKKPEGYDDI 
Sbjct: 182 TYSILIDNVEKQTGSLYSDWDLLPPKTIKDPEAKKPEDWDDKEYIADPEDKKPEGYDDIL 241

Query: 245 KEITDPDAKKPDDWDDEEDGEWTAPTIPNPEYKGPWKP---------------------- 282
           KE+ DP+AKKP+DWDDEEDGEWTAPTIPNPEYKGPWKP                      
Sbjct: 242 KELPDPEAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKPKKIKNPNYQGKWKAPIIDNPDF 301

Query: 283 KDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKHKDAEKAAFD 342
           KDDP+LYVYP+L+YVGIELWQVKSGT+FDNVLVSDDPEYAK++AEETWGK KDAEKAAF+
Sbjct: 302 KDDPELYVYPDLRYVGIELWQVKSGTLFDNVLVSDDPEYAKQMAEETWGKQKDAEKAAFE 361

Query: 343 EAEKKREEEESKDAP-DSDAEDNDDDDTEDDDDADAETKSDSSSGDADKDVH 393
           E EKKR+EEESK+ P DSDAE+ D+    + +D+DAETK+D++  D + +VH
Sbjct: 362 EVEKKRDEEESKEDPADSDAEEEDEAGDAEGEDSDAETKADTA--DDEDEVH 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|197717740|gb|ACH72686.1| calreticulin [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|297848142|ref|XP_002891952.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297337794|gb|EFH68211.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225437549|ref|XP_002270354.1| PREDICTED: calreticulin [Vitis vinifera] gi|297743974|emb|CBI36944.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449490831|ref|XP_004158720.1| PREDICTED: LOW QUALITY PROTEIN: calreticulin-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15223517|ref|NP_176030.1| calreticulin-1 [Arabidopsis thaliana] gi|11131540|sp|O04151.1|CALR1_ARATH RecName: Full=Calreticulin-1; Flags: Precursor gi|12321748|gb|AAG50908.1|AC069159_9 calreticulin (crt1) [Arabidopsis thaliana] gi|12323027|gb|AAG51504.1|AC058785_7 calreticulin (Crt1) [Arabidopsis thaliana] gi|2052379|gb|AAC49695.1| calreticulin [Arabidopsis thaliana] gi|17065104|gb|AAL32706.1| calreticulin (Crt1) [Arabidopsis thaliana] gi|30725696|gb|AAP37870.1| At1g56340 [Arabidopsis thaliana] gi|332195258|gb|AEE33379.1| calreticulin-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79320099|ref|NP_001031199.1| calreticulin-1 [Arabidopsis thaliana] gi|332195259|gb|AEE33380.1| calreticulin-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|227202752|dbj|BAH56849.1| AT1G56340 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9858814|gb|AAG01147.1|AF283816_1 calreticulin [Pinus taeda] Back     alignment and taxonomy information
>gi|732893|emb|CAA59694.1| tobacco calretulin [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query399
UNIPROTKB|P93508415 P93508 "Calreticulin" [Ricinus 0.714 0.686 0.777 2.6e-125
TAIR|locus:2010723425 CRT1a "calreticulin 1a" [Arabi 0.771 0.724 0.718 4e-122
TAIR|locus:2195326424 CRT1b "calreticulin 1b" [Arabi 0.771 0.726 0.712 1.7e-121
UNIPROTKB|Q9SLY8424 LOC_Os07g14270 "Calreticulin" 0.739 0.695 0.707 5.4e-118
UNIPROTKB|Q8K3H7417 CALR "Calreticulin" [Cricetulu 0.666 0.637 0.521 1e-90
UNIPROTKB|P27797417 CALR "Calreticulin" [Homo sapi 0.666 0.637 0.517 1e-90
UNIPROTKB|Q2HWU3417 CALR "Calreticulin" [Macaca fu 0.666 0.637 0.517 1e-90
UNIPROTKB|Q4R6K8417 CALR "Calreticulin" [Macaca fa 0.666 0.637 0.517 1e-90
UNIPROTKB|Q4VIT5417 CALR "Calreticulin" [Chloroceb 0.666 0.637 0.517 1e-90
RGD|620288416 Calr "calreticulin" [Rattus no 0.666 0.639 0.517 2.1e-90
UNIPROTKB|P93508 P93508 "Calreticulin" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
 Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
 Identities = 230/296 (77%), Positives = 241/296 (81%)

Query:    25 VFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAE 84
             VFFEERF+DGWE+RWV SDWKKDENTAGEWNYT+GKWNGDPNDKGIQTSEDYRFYAISAE
Sbjct:    22 VFFEERFEDGWENRWVKSDWKKDENTAGEWNYTSGKWNGDPNDKGIQTSEDYRFYAISAE 81

Query:    85 FPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYS 144
             FPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLS   DQKKFGGDTPYSIMFGPDICGYS
Sbjct:    82 FPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSSSTDQKKFGGDTPYSIMFGPDICGYS 141

Query:   145 TKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQSGSLYSDW 204
             TKKVHAIL YN TN LIKKEVPCETDQLTHVYT ++RPDATYSILIDN EKQ+GSLY+DW
Sbjct:   142 TKKVHAILNYNDTNHLIKKEVPCETDQLTHVYTLVIRPDATYSILIDNVEKQTGSLYTDW 201

Query:   205 DLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXXXXX 264
             DLLPPK IKDP+AKKPEDWD+KEYIPDPEDKKPEGYDDIPKEI                 
Sbjct:   202 DLLPPKKIKDPEAKKPEDWDEKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDWDDEEDG 261

Query:   265 XXXXPTIPNPEYKGPWKPKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPE 320
                 PTI NPEYKGPWKPK   +    PN  Y G   W+     M DN    DDPE
Sbjct:   262 EWTAPTIANPEYKGPWKPKKIKN----PN--YKG--KWKAP---MIDNPDFKDDPE 306
GO:0005788 "endoplasmic reticulum lumen" evidence=IDA
TAIR|locus:2010723 CRT1a "calreticulin 1a" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195326 CRT1b "calreticulin 1b" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SLY8 LOC_Os07g14270 "Calreticulin" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q8K3H7 CALR "Calreticulin" [Cricetulus griseus (taxid:10029)] Back     alignment and assigned GO terms
UNIPROTKB|P27797 CALR "Calreticulin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HWU3 CALR "Calreticulin" [Macaca fuscata fuscata (taxid:9543)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R6K8 CALR "Calreticulin" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q4VIT5 CALR "Calreticulin" [Chlorocebus aethiops (taxid:9534)] Back     alignment and assigned GO terms
RGD|620288 Calr "calreticulin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04151CALR1_ARATHNo assigned EC number0.82320.89220.8376yesno
P27798CALR_CAEELNo assigned EC number0.53450.75680.7645yesno
P18418CALR_RATNo assigned EC number0.53770.78940.7572yesno
P29413CALR_DROMENo assigned EC number0.50670.85710.8423yesno
P27797CALR_HUMANNo assigned EC number0.53480.78940.7553yesno
O81919CALR_BETVUNo assigned EC number0.83470.80950.7764N/Ano
Q9SP22CALR_MAIZENo assigned EC number0.75360.79940.7595N/Ano
P52193CALR_BOVINNo assigned EC number0.52580.79940.7649yesno
P93508CALR_RICCONo assigned EC number0.83520.79190.7614N/Ano
Q8K3H7CALR_CRIGRNo assigned EC number0.53770.78940.7553yesno
Q40401CALR_NICPLNo assigned EC number0.80890.83450.8004N/Ano
P28491CALR_PIGNo assigned EC number0.51970.81450.7793yesno
Q23858CALR_DICDINo assigned EC number0.52700.86710.8160yesno
Q9ZPP1CALR_BERSTNo assigned EC number0.79310.90220.8653N/Ano
Q9ZNY3CALR_EUGGRNo assigned EC number0.51800.82950.8254N/Ano
P14211CALR_MOUSENo assigned EC number0.53480.78940.7572yesno
Q38858CALR2_ARATHNo assigned EC number0.80210.89220.8396nono
Q9XF98CALR_PRUARNo assigned EC number0.78750.85460.8099N/Ano
P15253CALR_RABITNo assigned EC number0.51970.81450.7775yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
pfam00262359 pfam00262, Calreticulin, Calreticulin family 1e-120
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 2e-04
pfam12569516 pfam12569, NARP1, NMDA receptor-regulated protein 0.001
TIGR01651 600 TIGR01651, CobT, cobaltochelatase, CobT subunit 0.002
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 0.004
>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family Back     alignment and domain information 
 Score =  352 bits (906), Expect = e-120
 Identities = 173/362 (47%), Positives = 213/362 (58%), Gaps = 74/362 (20%)

Query: 25  VFFEERFDDG--WESRWVTSDWKKDENTAGEWNYTAGKWNGD-PNDKGIQTSEDYRFYAI 81
           V+F E+FDD   WE RW+ S  KKD++  G+W   AGK+ G    DKG+ T +D +FYAI
Sbjct: 1   VYFFEQFDDDDLWEKRWIPSKAKKDDD--GKWKVEAGKFYGGEEKDKGLVTKDDAKFYAI 58

Query: 82  SAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDI 140
           SA+FP+ FSNK KTLV Q+ VK +Q +DCGG Y+KLLS + DQK F G+TPY+IMFGPDI
Sbjct: 59  SAKFPKPFSNKGKTLVVQYEVKLQQGIDCGGAYIKLLSKDFDQKDFSGETPYTIMFGPDI 118

Query: 141 CGYSTKKVHAILT------YNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNAE 194
           CG  TKKVH I        Y     LIKK +    D+LTH+YT I+RPD T+ ILID   
Sbjct: 119 CGSDTKKVHFIFRHKPITGYKEEKHLIKKPISR-CDKLTHLYTLIIRPDNTFEILIDGEV 177

Query: 195 KQSGSLYSDWD--LLPPKTIKDP-----------------DAKKPEDWDDKE--YIPDPE 233
            +SGSL  D+D    PPK I DP                 +AKKPEDWD+ E  +IPDP 
Sbjct: 178 VKSGSLLEDFDPPFNPPKEIPDPTDKKPEDWDDREKIPDPEAKKPEDWDEDEPEFIPDPN 237

Query: 234 DKKPEG-YDDIPKEITDPDAKKPDDWDDEEDGEWTAPTIPNP-----------------E 275
             KPEG  +D P+ I DPDA KP+DWDDEEDGEW AP IPNP                 +
Sbjct: 238 AVKPEGWLEDEPEYIPDPDATKPEDWDDEEDGEWEAPMIPNPKCEKACGCGKPPMIKNPK 297

Query: 276 YKGPWKPK----------------------DDPDLYVYPNLKYVGIELWQVKSGTMFDNV 313
           YKG WKP                       +DP+ Y    +  +G ELWQVKSG +FDN+
Sbjct: 298 YKGKWKPPMIDNPNYKGVWKPRKIPNPDYFEDPNPYNLEPIGAIGFELWQVKSGILFDNI 357

Query: 314 LV 315
           L+
Sbjct: 358 LI 359

Length = 359
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1 Back     alignment and domain information
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 399
KOG0674406 consensus Calreticulin [Posttranslational modifica 100.0
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 100.0
KOG0675558 consensus Calnexin [Posttranslational modification 100.0
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 99.78
KOG0675558 consensus Calnexin [Posttranslational modification 99.73
KOG0674406 consensus Calreticulin [Posttranslational modifica 99.72
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=7.3e-130  Score=951.97  Aligned_cols=350  Identities=64%  Similarity=1.166  Sum_probs=326.3

Q ss_pred             HHHHHHHHH--hhhccceeeeeccCC--CCCCCCeEeCccccCCCCcCeEEEeccccCCCCC-CceeeeCccccceeecc
Q 045396            9 LSLTLLTIF--LTIASAHVFFEERFD--DGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISA   83 (399)
Q Consensus         9 ~~~~~~~~~--~~~~~~~v~F~E~F~--~~w~~rWv~S~~kk~~~~~G~w~~~~g~~~g~~~-D~GL~t~~~ak~yaIsa   83 (399)
                      +.+++||+|  +++++++|||.|.|.  ++|+.|||+|++++.  ..|.|.+++|+|+|+++ |+||||++++||||||+
T Consensus         3 ~~~~~~~ll~~v~~~sa~Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~sa   80 (406)
T KOG0674|consen    3 PSFWVLCLLALVALASAEVYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAISA   80 (406)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeeeec
Confidence            334444444  246778899999995  579999999999864  57999999999999987 99999999999999999


Q ss_pred             cCCCcCCCCCceEEEEEEecccccccCceeEEeccCCCCCCCcCCCCCeeEEEecCCCCCCCCeEEEEEeeCCccccccc
Q 045396           84 EFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKK  163 (399)
Q Consensus        84 ~l~~f~~~~k~LVvQYeVK~e~~idCGGaYIKLl~~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~~~~~~~~kk  163 (399)
                      +|++|+|++|+|||||+|||+|+|+|||||||||++++||.+|+++|||.|||||||||++|+|||+||+|+|+||+|++
T Consensus        81 ~F~~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~nhlikK  160 (406)
T KOG0674|consen   81 KFKPFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGKNHLIKK  160 (406)
T ss_pred             ccccccccCceEEEEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcccCCCCceEEEEEecccccchhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccceEEEEeCCCCceEEEECceeeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 045396          164 EVPCETDQLTHVYTFILRPDATYSILIDNAEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDI  243 (399)
Q Consensus       164 ~~~~~~D~~tHLYTLIi~pdntyeI~ID~~~~~~Gsl~~Dwd~~pp~~I~Dp~d~KPeDWdd~~~I~DP~a~KPeDWDde  243 (399)
                      .++|++|++|||||||||||+||+|+|||+.+.+|||.+||+++||++|.||.++||+||+++++|+||+++||++|+ .
T Consensus       161 ~i~Ck~D~~tHlYTlIlRPd~TYeVkIDn~~~esGsle~DWdll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe-~  239 (406)
T KOG0674|consen  161 DIRCKDDELTHLYTLILRPDATYEVKIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE-K  239 (406)
T ss_pred             ccccccCCcceeEEEEecCCCeeEEEEcccccccCccccccccccccccCCccccCcccchhhccCCCccccCccccc-c
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 6


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC----------------------CCCCCCCCCCcceEeEEE
Q 045396          244 PKEITDPDAKKPDDWDDEEDGEWTAPTIPNPEYKGPWKPK----------------------DDPDLYVYPNLKYVGIEL  301 (399)
Q Consensus       244 p~~IpDP~a~KPedwd~~~dGeW~pp~I~NP~YkG~WkP~----------------------~dp~~~~~~~i~~vG~El  301 (399)
                      |++||||+|+||++||++|||+|+||||+||+|+|+|+|+                      ++|++|.+.+|++|||||
T Consensus       240 pehipDpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~lgldL  319 (406)
T KOG0674|consen  240 PEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGVLGLDL  319 (406)
T ss_pred             ccccCCcccCCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCcCCCCcceeeecccceeeeeE
Confidence            9999999999999999999999999999999999999997                      556678999999999999


Q ss_pred             eEeecCceeeeEEEcCCHHHHHHHHHHhhccchhHHHHHHHHHHhhh--hhhhhcCCCCCCC
Q 045396          302 WQVKSGTMFDNVLVSDDPEYAKKLAEETWGKHKDAEKAAFDEAEKKR--EEEESKDAPDSDA  361 (399)
Q Consensus       302 W~~~~g~~FDNili~dd~~~A~~~~~~t~~~k~~~E~~~~~~~~~~~--~~~e~~~~~~~~~  361 (399)
                      |||+|||||||||||||+++|++++++||+..+.+|++|++++.+.+  .++|.+++.++++
T Consensus       320 WQVKSgtIFDN~LitdD~eyA~k~~~eTwg~~k~~ek~~~~~~~k~qrk~eee~kka~~e~e  381 (406)
T KOG0674|consen  320 WQVKSGTIFDNFLITDDEEYAEKFANETWGKTKDAEKEMKDKADKEQRKEEEEAKKASAEEE  381 (406)
T ss_pred             EEeecceeecceEecCCHHHHHHHHHhhhcccccHHHHhhhhhhhhcchhHHhhhcCchhhh
Confidence            99999999999999999999999999999999999999998876544  4555555544443

>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
3rg0_A332 Structural And Functional Relationships Between The 2e-79
3o0v_A273 Crystal Structure Of The Calreticulin Lectin Domain 5e-55
3o0v_A273 Crystal Structure Of The Calreticulin Lectin Domain 2e-09
3pos_A265 Crystal Structure Of The Globular Domain Of Human C 7e-55
3pos_A265 Crystal Structure Of The Globular Domain Of Human C 2e-10
3o0w_A273 Structural Basis Of Carbohydrate Recognition By Cal 8e-54
3o0w_A273 Structural Basis Of Carbohydrate Recognition By Cal 2e-09
1jhn_A424 Crystal Structure Of The Lumenal Domain Of Calnexin 1e-34
1hhn_A101 Calreticulin P-Domain Length = 101 6e-07
1k9c_A74 Solution Structure Of Calreticulin P-Domain Subdoma 2e-06
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin And Arm Domains Of Calreticulin Length = 332 Back     alignment and structure 
Iteration: 1

 Score =  292 bits (748), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 157/318 (49%), Positives = 204/318 (64%), Gaps = 31/318 (9%)
Query: 25  VFFEERFDDG--WESRWVTSDWKKDENTAGEWNYTAGKWNGD-PNDKGIQTSEDYRFYAI 81
           ++F+E+F DG  W +RWV S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+
Sbjct: 7   IYFKEQFLDGDAWTNRWVESKHKSD---FGKFVLSSGKFYGDLEKDKGLQTSQDARFYAL 63
Query: 82  SAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDIC 141
           SA+F  FSNK +TLV QF+VKHEQ +DCGGGY+KL    +DQK   GD+ Y+IMFGPDIC
Sbjct: 64  SAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDIC 123
Query: 142 GYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQSGSLY 201
           G  TKKVH I  Y G N LI K++  + D+ TH+YT I+RPD TY + IDN++ +SGSL 
Sbjct: 124 GPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 183
Query: 202 SDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIXXXXXXXXXXXXXX 261
            DWD LPPK IKDPDA KPEDWD++  I DP D KPE +D                    
Sbjct: 184 DDWDFLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWD-----------------KGG 226
Query: 262 XXXXXXXPTIPNPEYKGPW------KPKDDPD--LYVYPNLKYVGIELWQVKSGTMFDNV 313
                    I NP+YKG W       P+  PD  +Y Y +   +G++LWQVKSGT+FDN 
Sbjct: 227 SGGEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVKSGTIFDNF 286
Query: 314 LVSDDPEYAKKLAEETWG 331
           L+++D  YA++   ETWG
Sbjct: 287 LITNDEAYAEEFGNETWG 304
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain Length = 273 Back     alignment and structure
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain Length = 273 Back     alignment and structure
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin Length = 265 Back     alignment and structure
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin Length = 265 Back     alignment and structure
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273 Back     alignment and structure
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273 Back     alignment and structure
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin Length = 424 Back     alignment and structure
>pdb|1HHN|A Chain A, Calreticulin P-Domain Length = 101 Back     alignment and structure
>pdb|1K9C|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain (Residues 189-261) Length = 74 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 1e-117
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 1e-104
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 5e-70
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 4e-13
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 2e-25
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 4e-05
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 2e-12
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Length = 332 Back     alignment and structure
 Score =  343 bits (882), Expect = e-117
 Identities = 163/345 (47%), Positives = 216/345 (62%), Gaps = 31/345 (8%)

Query: 21  ASAHVFFEERFDDG--WESRWVTSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYR 77
               ++F+E+F DG  W +RWV S  K D    G++  ++GK+ GD   DKG+QTS+D R
Sbjct: 3   MDPAIYFKEQFLDGDAWTNRWVESKHKSDF---GKFVLSSGKFYGDLEKDKGLQTSQDAR 59

Query: 78  FYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFG 137
           FYA+SA+F  FSNK +TLV QF+VKHEQ +DCGGGY+KL    +DQK   GD+ Y+IMFG
Sbjct: 60  FYALSAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFG 119

Query: 138 PDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQS 197
           PDICG  TKKVH I  Y G N LI K++  + D+ TH+YT I+RPD TY + IDN++ +S
Sbjct: 120 PDICGPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVES 179

Query: 198 GSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEITDPDAKKPDD 257
           GSL  DWD LPPK IKDPDA KPEDWD++  I DP D KPE +D                
Sbjct: 180 GSLEDDWDFLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWD---------------- 223

Query: 258 WDDEEDGEWTAPTIPNPEYKGPWKP--------KDDPDLYVYPNLKYVGIELWQVKSGTM 309
                 GEW    I NP+YKG W            D ++Y Y +   +G++LWQVKSGT+
Sbjct: 224 -KGGSGGEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVKSGTI 282

Query: 310 FDNVLVSDDPEYAKKLAEETWGKHKDAEKAAFDEAEKKREEEESK 354
           FDN L+++D  YA++   ETWG  K AEK   D+ ++++  +   
Sbjct: 283 FDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKLEH 327
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Length = 424 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Length = 101 Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Length = 101 Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Length = 38 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query399
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 100.0
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 100.0
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 100.0
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 99.94
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 99.82
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 99.81
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 99.36
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 99.03
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 98.24
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=8.7e-122  Score=901.87  Aligned_cols=310  Identities=52%  Similarity=1.006  Sum_probs=266.9

Q ss_pred             hccceeeeeccCCC--CCCCCeEeCccccCCCCcCeEEEeccccCCC-CCCceeeeCccccceeecccCCCcCCCCCceE
Q 045396           20 IASAHVFFEERFDD--GWESRWVTSDWKKDENTAGEWNYTAGKWNGD-PNDKGIQTSEDYRFYAISAEFPEFSNKDKTLV   96 (399)
Q Consensus        20 ~~~~~v~F~E~F~~--~w~~rWv~S~~kk~~~~~G~w~~~~g~~~g~-~~D~GL~t~~~ak~yaIsa~l~~f~~~~k~LV   96 (399)
                      .++++|||+|+|++  +|++|||+|++++   ..|+|.+++|+|+|+ ++|+||||+++|||||||++|+||+|++|+||
T Consensus         2 ~~~~~vyF~E~F~d~~~w~~rWv~S~~~~---~~G~w~~~~g~~~~~~~~DkGL~t~~~ak~yAISakf~pf~n~~k~LV   78 (332)
T 3rg0_A            2 SMDPAIYFKEQFLDGDAWTNRWVESKHKS---DFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFEPFSNKGQTLV   78 (332)
T ss_dssp             --CCCEEEEECCCSGGGGGGTEEECCSSS---SCCCEEEECCSSCSSTTTTCEEEECSSSEEEEEEEEEEEECCTTSCEE
T ss_pred             CcceEEEEEeecCCCCcccCCceeCCCcc---cCCeEEeecCcccCCcccccceeecchhhhhhhhcccCCccCCCCCEE
Confidence            35789999999986  7999999999875   369999999999998 47999999999999999999977999999999


Q ss_pred             EEEEEecccccccCceeEEeccCCCCCCCcCCCCCeeEEEecCCCCCCCCeEEEEEeeCCcccccccCCCCCCCCccceE
Q 045396           97 FQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVY  176 (399)
Q Consensus        97 vQYeVK~e~~idCGGaYIKLl~~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~~~~~~~~kk~~~~~~D~~tHLY  176 (399)
                      |||||||||+|+|||||||||+.++||++|+++|||+||||||+||++++||||||+|++++|+++++++|++|++||||
T Consensus        79 vQYeVK~e~~idCGGaYiKLl~~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvH~I~~~k~~~h~~kk~i~~~~D~~THLY  158 (332)
T 3rg0_A           79 VQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLY  158 (332)
T ss_dssp             EEEEEEETTCCSEEECCEEEECSSCCGGGCCTTSCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCCBCCCSSSEEEE
T ss_pred             EEEEEEcccccccCceEEEeecCcCCHhhcCCCCcceEEecCcccCCCCCEEEEEEEeCCccccccCCCCCCCCCCCceE
Confidence            99999999999999999999999999999999999999999999997799999999999999999999999999999999


Q ss_pred             EEEeCCCCceEEEECceeeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045396          177 TFILRPDATYSILIDNAEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEITDPDAKKPD  256 (399)
Q Consensus       177 TLIi~pdntyeI~ID~~~~~~Gsl~~Dwd~~pp~~I~Dp~d~KPeDWdd~~~I~DP~a~KPeDWDdep~~IpDP~a~KPe  256 (399)
                      ||||||||||+|+|||++|.+|||++||+++||++|+||+++||+||+|+++||||+|+||+|||+ |            
T Consensus       159 TLIi~pdntyeI~ID~~~v~~GsL~~Dwd~~ppk~I~Dp~d~KPedWdd~~~I~DP~a~KPeDWd~-p------------  225 (332)
T 3rg0_A          159 TLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDK-G------------  225 (332)
T ss_dssp             EEEECTTSEEEEEETTEEEEEEEHHHHSCCSCCSEEECTTCCCCTTCCCCCCCC--------------------------
T ss_pred             EEEEcCCCeEEEEECCEEEecccccCCCCcCCccccCCcccCCcccCcCcccCCCcccCCcccccc-c------------
Confidence            999999999999999999999999999999999999999999999999999999999999999995 2            


Q ss_pred             CCCCCCCCcccCCCCCCCCCCCCCCCC--CCCC------CCCCCCcceEeEEEeEeecCceeeeEEEcCCHHHHHHHHHH
Q 045396          257 DWDDEEDGEWTAPTIPNPEYKGPWKPK--DDPD------LYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEE  328 (399)
Q Consensus       257 dwd~~~dGeW~pp~I~NP~YkG~WkP~--~dp~------~~~~~~i~~vG~ElW~~~~g~~FDNili~dd~~~A~~~~~~  328 (399)
                          ++.|.|+||+|+||+|+|.|+||  +||+      +|++.+|++||||||||++||||||||||+|+++|++++++
T Consensus       226 ----~YkG~Wkp~~I~NP~YkG~W~p~~I~NP~Y~~D~~~~~~~~i~~iG~ElWq~~sg~iFDNilItdd~~~A~~~~~~  301 (332)
T 3rg0_A          226 ----GSGGEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNE  301 (332)
T ss_dssp             -------------------CCCCCCCCEEECTTCCCCTTTTCCSCEEEEEEEEEESSCCEEEEEEEEESCHHHHHHHHHT
T ss_pred             ----cccccccccccCCCcccCCccCCccCCCCCcCCcchhccccccEEEEEEEeccCCcEEeeEEEcCCHHHHHHHHHH
Confidence                27899999999999999999999  5554      56789999999999999999999999999999999999999


Q ss_pred             hhccchhHHHHHHHHHHhhhh
Q 045396          329 TWGKHKDAEKAAFDEAEKKRE  349 (399)
Q Consensus       329 t~~~k~~~E~~~~~~~~~~~~  349 (399)
                      ||++++.+|++|+++++++++
T Consensus       302 t~~~~~~~Ek~~~~~~~~~~~  322 (332)
T 3rg0_A          302 TWGVTKAAEKQMKDKQDEEQR  322 (332)
T ss_dssp             THHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHhHHHh
Confidence            999999999999887655444
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 399
d1jhna4249 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Cani 3e-82
d1k9ca_74 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 3e-29
d1jhna3142 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familia 9e-24
d1jhna3142 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familia 4e-18
d1k91a_37 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 4e-13
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 249 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

 Score =  250 bits (639), Expect = 3e-82
 Identities = 73/242 (30%), Positives = 114/242 (47%), Gaps = 21/242 (8%)

Query: 20  IASAHVFFEERFDDGWESRWVTSDWKKDE------NTAGEWNYTAGKWNGDPNDKGIQTS 73
           + S  V+F + FD G  S W+ S  KKD+         G+W     K    P DKG+   
Sbjct: 5   VPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLM 64

Query: 74  EDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSG--EVDQKKFGGDT 130
              + +AISA+  + F    K L+ Q+ V  +  ++CGG Y+KLLS   E++  +F   T
Sbjct: 65  SRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKT 124

Query: 131 PYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCE----------TDQLTHVYTFIL 180
           PY+IMFGPD CG    K+H I  +      + +E   +          TD+ TH+YT IL
Sbjct: 125 PYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLIL 183

Query: 181 RPDATYSILIDNAEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGY 240
            PD ++ IL+D +   SG+L   + + P   I         D     +I   + +  + +
Sbjct: 184 NPDNSFEILVDQSIVNSGNL-EPFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDW 242

Query: 241 DD 242
            +
Sbjct: 243 AN 244
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 74 Back     information, alignment and structure
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 142 Back     information, alignment and structure
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 142 Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 37 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query399
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.96
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 99.94
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 99.81
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.54
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.53
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 98.34
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 97.02
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=100.00  E-value=1e-81  Score=599.64  Aligned_cols=221  Identities=33%  Similarity=0.555  Sum_probs=195.8

Q ss_pred             hccceeeeeccCCCCCCCCeEeCccccCCC------CcCeEEEeccccCCCCCCceeeeCccccceeecccCC-CcCCCC
Q 045396           20 IASAHVFFEERFDDGWESRWVTSDWKKDEN------TAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFP-EFSNKD   92 (399)
Q Consensus        20 ~~~~~v~F~E~F~~~w~~rWv~S~~kk~~~------~~G~w~~~~g~~~g~~~D~GL~t~~~ak~yaIsa~l~-~f~~~~   92 (399)
                      +++++|||+|+|+++|.+|||+|+++++.+      +.|+|.+.+++..+.++|+||||+++|||||||++|+ ||++++
T Consensus         5 ~~~~~v~F~E~Fd~~~~~rWi~S~akk~~~~~~~~~y~G~W~~~~~~~~~~~~DkGL~~~~~ak~yaIs~~l~~pf~~~~   84 (249)
T d1jhna4           5 VPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDT   84 (249)
T ss_dssp             CCCSCCSSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECSSS
T ss_pred             CCCcceeEEeccCCcccCCCEECcccccCcccceeeccceeeeecccccCCCCcccceecccchhhhhhccCCCCcccCC
Confidence            567999999999999999999999987653      4566666666666777899999999999999999997 599999


Q ss_pred             CceEEEEEEecccccccCceeEEeccCC--CCCCCcCCCCCeeEEEecCCCCCCCCeEEEEEeeCCcc------cccccC
Q 045396           93 KTLVFQFSVKHEQKLDCGGGYMKLLSGE--VDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTN------KLIKKE  164 (399)
Q Consensus        93 k~LVvQYeVK~e~~idCGGaYIKLl~~~--~d~~~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~~~~~------~~~kk~  164 (399)
                      |+||||||||+|++|+|||||||||+..  +++++|+++|||+||||||+|| .++||||||+|++.+      ++++++
T Consensus        85 k~LVvQYeVk~q~~~~CGGaYiKLl~~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfIf~~~np~~~~~eek~~~~p  163 (249)
T d1jhna4          85 KPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAKRP  163 (249)
T ss_dssp             SCEEEEEEECCTTCCSEEECCEEEEBCCSSCCGGGCCSSCCEEEEEEEEEES-SCCEEEEEEEEECTTTCCEEEECCCCC
T ss_pred             CCEEEEEEeeeccCccccceEEEeecCcccCCHhHcCCCCCceEEeCCcccC-CCCEEEEEEEcCCCCCccceeeeecCC
Confidence            9999999999999999999999999874  7899999999999999999999 789999999998743      233443


Q ss_pred             C----CCCCCCccceEEEEeCCCCceEEEECceeeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCC
Q 045396          165 V----PCETDQLTHVYTFILRPDATYSILIDNAEKQSGSLYSDWDLLPPKTIKDPDAKKPEDWDDKEYIPDPEDKKPEGY  240 (399)
Q Consensus       165 ~----~~~~D~~tHLYTLIi~pdntyeI~ID~~~~~~Gsl~~Dwd~~pp~~I~Dp~d~KPeDWdd~~~I~DP~a~KPeDW  240 (399)
                      .    .+.+|++||||||||||||||+|+|||+++.+|||. +|.+.||+.|.||.++||+||+|+++|+||+++||+||
T Consensus       164 ~~~~~~~~~D~~tHLYTLIi~pdntfeI~iDg~~~~~G~le-~~~~~p~~~i~dp~~~KP~DW~d~~~I~dp~~~kpedW  242 (249)
T d1jhna4         164 DADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLE-PFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDW  242 (249)
T ss_dssp             SSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEEEEECCC-TTCCCCEEEEEECCCCSSSCCBCEEEEEESSSHHHHHH
T ss_pred             CccccccCcCCCcccceEEECCCCeEEEEeCCccccCCCcC-cccCCCcccCCCcccCCCCCccccccccCCCcCChhhh
Confidence            2    245799999999999999999999999999999975 68899999999999999999999999999999999999


Q ss_pred             CC
Q 045396          241 DD  242 (399)
Q Consensus       241 Dd  242 (399)
                      |+
T Consensus       243 de  244 (249)
T d1jhna4         243 AN  244 (249)
T ss_dssp             HH
T ss_pred             hh
Confidence            86
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure