Citrus Sinensis ID: 045402

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
MAKFLISLIFSIFLFTVSNNLNPSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCSAKYPCEGIRLYKVNLSYLKLVAQSSCNNVIGKALGIVQPNTCL
cHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEEcccccccEEEEEEEEEEccccccccccccEEEEEEEEEEEEEEccEEEcccccccccccccccccccccEEEEEEEEccEEEEcEEEEccccEEEEEEEEEcEEEEEEEEEcccccccccccccccEEcEEEEEEEEEccccEEEEccccEEEEEEEEEEcccccEEEEEEEcccccccEEEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEEEEcccccccccccccEEEEEEEEEEEEEEEccccEEEEEccccccEEcEEEEEEEEEEccccccEEEEEEEEEEcccccccccc
cHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEEcccccccEEEEEEEEEEccccHHHccccccEEEEEEEcEEEEEEEEEccccccEcccccccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEccEEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccEEEEEEccccccccEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEcccccccEEccccccccccccccccc
MAKFLISLIFSIFLFTvsnnlnpsaatsSVYNVLrfgakgngviDSTEAFAKAWAAACAsnestiiyvpkgryllgsvafkgecqssditfqidgtlvapadyrvlgqadnwlsfegvsgvsiiggaldakgtSLWACKaaagttcpngattlsitnsnnvsIKGLLSLNSQMYHIVINRCQDVLVEGAKiiaagdspntdgihiqqsrnvkirsssiktgddcisigrgtnnlwiervtcgpghgisigslgkdmdeegvQNVTVWKTVFTgtqnglrikswarpsngfvkgVRFIDAVMQNvqnpiiidqnycphnlncpgqvsgvkisdiiywnirgtsstpiaikfncsakypcegirLYKVNLSYLKLVAQSSCNNVIGKALGivqpntcl
MAKFLISLIFSIFLFTVSNNLNPSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIaagdspntdgihiqqsrnvkirsssiktgddcisiGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTVFtgtqnglrikswarpsngFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCSAKYPCEGIRLYKVNLSYLKLVAQSSCNNVIGKALGIVQPNTCL
MAKflislifsiflfTVSNNLNPSAATSSVYNVLRFGAKGNGVIDSTEafakawaaacaSNESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCSAKYPCEGIRLYKVNLSYLKLVAQSSCNNVIGKALGIVQPNTCL
***FLISLIFSIFLFTVSNNLNPSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDS***DGIHI*****VKI***SIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCSAKYPCEGIRLYKVNLSYLKLVAQSSCNNVIGKALGIVQ*****
*AKFLISLIFSIFLFTVSNNLNPSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCSAKYPCEGIRLYKVNLSYLKLVAQSSCNNVIGKALGIVQPNTCL
MAKFLISLIFSIFLFTVSNNLNPSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCSAKYPCEGIRLYKVNLSYLKLVAQSSCNNVIGKALGIVQPNTCL
MAKFLISLIFSIFLFTVSNNLNPSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCSAKYPCEGIRLYKVNLSYLKLVAQSSCNNVIGKALGIVQPNTCL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKFLISLIFSIFLFTVSNNLNPSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCSAKYPCEGIRLYKVNLSYLKLVAQSSCNNVIGKALGIVQPNTCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query396 2.2.26 [Sep-21-2011]
P48979393 Polygalacturonase OS=Prun N/A no 0.974 0.982 0.572 1e-131
O22818405 Probable polygalacturonas no no 0.926 0.906 0.506 1e-103
O23147431 Polygalacturonase ADPG1 O no no 0.906 0.832 0.442 5e-77
Q6H9K0377 Exopolygalacturonase (Fra N/A no 0.893 0.938 0.423 2e-76
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.901 0.813 0.425 4e-75
P35336467 Polygalacturonase OS=Acti N/A no 0.911 0.773 0.412 6e-73
P48978460 Polygalacturonase OS=Malu N/A no 0.954 0.821 0.407 9e-73
Q39766407 Polygalacturonase OS=Goss N/A no 0.952 0.926 0.391 1e-71
Q39786407 Polygalacturonase OS=Goss N/A no 0.959 0.933 0.39 1e-70
Q8RY29433 Polygalacturonase ADPG2 O no no 0.916 0.838 0.418 4e-69
>sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica PE=2 SV=1 Back     alignment and function desciption
 Score =  468 bits (1203), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/393 (57%), Positives = 287/393 (73%), Gaps = 7/393 (1%)

Query: 4   FLISLIFSIFLFTVSNNLNPSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNES 63
           F +SLIF +F+      +N + A+   YNV   GAK +G  DST+AF  AWA ACAS   
Sbjct: 8   FSLSLIF-VFM------INSAIASPLTYNVASLGAKADGKTDSTKAFLSAWAKACASMNP 60

Query: 64  TIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSI 123
            +IYVP G + L  V F G C+++ ITF+I GTLVAP+DYRV+G A NW+ F  V+GV+I
Sbjct: 61  GVIYVPAGTFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTI 120

Query: 124 IGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQD 183
            GG LD +GT+LWACKA  G +CP+GATTL  ++SNN+ + GL SLNSQM+HIVIN  Q+
Sbjct: 121 SGGILDGQGTALWACKACHGESCPSGATTLGFSDSNNIVVSGLASLNSQMFHIVINDFQN 180

Query: 184 VLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGP 243
           V ++G ++  +G+SPNTDGIH+Q S  V I +S I TGDDC+SIG GT+NLWIE V CGP
Sbjct: 181 VQMQGVRVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGP 240

Query: 244 GHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQN 303
           GHGISIGSLGK+ +E GVQNVTV    F+GTQNGLRIKSW RPS GF + + F  A M N
Sbjct: 241 GHGISIGSLGKEQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVN 300

Query: 304 VQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCSAKYPCEGIRL 363
           V+NPI+IDQ+YCP N  CPGQVSGV+ISD+ Y +I GTS+T +A+KF+CS K+PC  I+L
Sbjct: 301 VENPIVIDQHYCPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKL 360

Query: 364 YKVNLSYLKLVAQSSCNNVIGKALGIVQPNTCL 396
             V L+Y    A+SSC++  G   G+VQP +CL
Sbjct: 361 EDVKLTYKNQAAESSCSHADGTTEGVVQPTSCL 393
Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.
Prunus persica (taxid: 3760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
224109162397 predicted protein [Populus trichocarpa] 0.982 0.979 0.694 1e-155
255566763387 Polygalacturonase precursor, putative [R 0.977 1.0 0.691 1e-154
296083401390 unnamed protein product [Vitis vinifera] 0.929 0.943 0.671 1e-136
255576398392 Polygalacturonase precursor, putative [R 0.989 1.0 0.595 1e-135
356577135399 PREDICTED: LOW QUALITY PROTEIN: polygala 0.941 0.934 0.605 1e-133
315143143393 endopolygalacturonase [Prunus armeniaca] 0.974 0.982 0.587 1e-133
87242603393 polygalacturonase [Prunus domestica subs 0.974 0.982 0.582 1e-132
3747093393 endopolygalacturonase [Prunus persica] g 0.974 0.982 0.582 1e-132
157313320393 endopolygalacturonase [Prunus persica] 0.974 0.982 0.582 1e-132
380469906393 endopolygalacturonase [Prunus armeniaca] 0.974 0.982 0.585 1e-132
>gi|224109162|ref|XP_002315106.1| predicted protein [Populus trichocarpa] gi|222864146|gb|EEF01277.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/393 (69%), Positives = 317/393 (80%), Gaps = 4/393 (1%)

Query: 5   LISLIFSIFLFTVSNNLNPSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNEST 64
           L S++F IFL ++ NN+N S+A  ++YNV  +GAK NG  DST+AF  AWAAAC S + T
Sbjct: 8   LHSILFFIFLVSL-NNINISSA-ETIYNVQTYGAKPNGKTDSTQAFLDAWAAACGSTDPT 65

Query: 65  IIYVPKGRYLLGSVAFKG-ECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSI 123
           IIY+P+GRYLLGSVAF G  C+S DIT +IDGTL+AP DYR+LG A NWLSFE VSGVSI
Sbjct: 66  IIYIPEGRYLLGSVAFTGGNCKSPDITVRIDGTLIAPEDYRILGLASNWLSFESVSGVSI 125

Query: 124 IGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQD 183
           +GGALDAKG+ LW CK+  G+ CP GATTLS  NSNN+ I GLLSLNSQM+HIVIN CQ+
Sbjct: 126 VGGALDAKGSPLWDCKSK-GSNCPAGATTLSFVNSNNIKINGLLSLNSQMFHIVINGCQN 184

Query: 184 VLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGP 243
           V V+G ++IAAGDSPNTDGIH+Q S +V I +SSIKTGDDCISIG GT NLWIERV CGP
Sbjct: 185 VQVQGVRVIAAGDSPNTDGIHVQLSTDVVIMNSSIKTGDDCISIGPGTKNLWIERVRCGP 244

Query: 244 GHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQN 303
           GHGISIGSL K MDE GVQNVTV  T+FTGT NG RIKSWAR S GF + +RFI A M N
Sbjct: 245 GHGISIGSLAKTMDEAGVQNVTVKSTIFTGTTNGFRIKSWARHSTGFAQAIRFIGATMIN 304

Query: 304 VQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCSAKYPCEGIRL 363
           VQNPIIIDQNYCPHNLNCP +VSG++ISD+IY  IRGTS+TP+AIKF+CS KYPC+GI L
Sbjct: 305 VQNPIIIDQNYCPHNLNCPNEVSGIQISDVIYQGIRGTSATPVAIKFDCSFKYPCKGITL 364

Query: 364 YKVNLSYLKLVAQSSCNNVIGKALGIVQPNTCL 396
             VNL+YL   AQS+C N IGK  G VQP+ CL
Sbjct: 365 QNVNLTYLNKEAQSTCTNAIGKISGQVQPDNCL 397

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255566763|ref|XP_002524365.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223536326|gb|EEF37976.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296083401|emb|CBI23356.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576398|ref|XP_002529091.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531442|gb|EEF33275.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356577135|ref|XP_003556683.1| PREDICTED: LOW QUALITY PROTEIN: polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|315143143|gb|ADT82706.1| endopolygalacturonase [Prunus armeniaca] Back     alignment and taxonomy information
>gi|87242603|gb|ABD33834.1| polygalacturonase [Prunus domestica subsp. insititia] Back     alignment and taxonomy information
>gi|3747093|gb|AAC64184.1| endopolygalacturonase [Prunus persica] gi|337730173|gb|AEI70577.1| endo-polygalacturonase [Prunus persica] gi|337730175|gb|AEI70578.1| endo-polygalacturonase [Prunus persica] gi|337730177|gb|AEI70579.1| endo-polygalacturonase [Prunus persica] gi|337730179|gb|AEI70580.1| endo-polygalacturonase [Prunus persica] Back     alignment and taxonomy information
>gi|157313320|gb|ABV32553.1| endopolygalacturonase [Prunus persica] Back     alignment and taxonomy information
>gi|380469906|gb|AFD62267.1| endopolygalacturonase [Prunus armeniaca] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
TAIR|locus:2034131397 AT1G65570 [Arabidopsis thalian 0.919 0.916 0.574 9.1e-116
TAIR|locus:2080422388 AT3G59850 [Arabidopsis thalian 0.946 0.966 0.543 1.7e-114
TAIR|locus:2043924384 AT2G43870 [Arabidopsis thalian 0.934 0.963 0.564 4.5e-114
TAIR|locus:2031963394 AT1G05660 [Arabidopsis thalian 0.957 0.961 0.492 1.1e-101
TAIR|locus:2051764392 AT2G43890 [Arabidopsis thalian 0.944 0.954 0.5 7.9e-101
TAIR|locus:2031953394 AT1G05650 [Arabidopsis thalian 0.957 0.961 0.484 5.6e-100
TAIR|locus:2043894394 AT2G43880 [Arabidopsis thalian 0.919 0.923 0.489 3.5e-98
TAIR|locus:2043974405 AT2G43860 [Arabidopsis thalian 0.926 0.906 0.487 7e-93
TAIR|locus:2026795468 AT1G70500 [Arabidopsis thalian 0.919 0.777 0.422 6.1e-71
UNIPROTKB|Q6H9K0377 plaa2 "Exopolygalacturonase" [ 0.891 0.936 0.406 1.6e-70
TAIR|locus:2034131 AT1G65570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
 Identities = 211/367 (57%), Positives = 274/367 (74%)

Query:    32 NVLRFGAKGNGVIDSTEXXXXXXXXXXXSNESTIIYVPKGRYLL-GSVAFKGE-CQSSDI 89
             NVL FGA  NG+++S +             +S +IYVPKGRYL+ G V F+GE C+S +I
Sbjct:    32 NVLSFGANPNGIVESAKAFSDAWDAACGVEDSVVIYVPKGRYLVSGEVRFEGESCKSREI 91

Query:    90 TFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNG 149
             T +IDGTL+ P DY +LG+ +NW SF GV  V+++GG+ DAKG++LW+CKA  G  CP G
Sbjct:    92 TLRIDGTLIGPQDYSLLGKKENWFSFSGVHNVTVLGGSFDAKGSTLWSCKAN-GYNCPEG 150

Query:   150 ATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSR 209
             ATTL   +SNNV IKG+LSLNSQ++HI INRC+++ +E  +IIA  +SPNTDGIHIQ S 
Sbjct:   151 ATTLRFMDSNNVKIKGVLSLNSQLFHIAINRCRNIKIEDVRIIAPDESPNTDGIHIQLST 210

Query:   210 NVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQNVTVWKT 269
             ++++R++SIKTGDDCISIG GT NL ++ +TCGPGHGISIGSL K ++E+GV+NVTV   
Sbjct:   211 DIEVRNASIKTGDDCISIGPGTKNLMVDGITCGPGHGISIGSLAKSIEEQGVENVTVKNA 270

Query:   270 VFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVK 329
             VF  T NGLRIKSW R SNGFV+ VRF+ A+M NV  PI+IDQNYCP + +CP Q SG+K
Sbjct:   271 VFVRTDNGLRIKSWPRHSNGFVERVRFLGAIMVNVSYPILIDQNYCPGDSSCPSQESGIK 330

Query:   330 ISDIIYWNIRGTSSTPIAIKFNCSAKYPCEGIRLYKVNLSYLKLVAQSSCNNVIGKALGI 389
             I+D+IY  I GTS+T IAIK +CS K PC GIR+  +NL+     A++SC NV GK LG+
Sbjct:   331 INDVIYSGIMGTSATEIAIKMDCSEKVPCTGIRMQAINLTSYGEAAKTSCTNVSGKQLGL 390

Query:   390 VQPNTCL 396
             V P+ CL
Sbjct:   391 VTPSGCL 397
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2080422 AT3G59850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043924 AT2G43870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031963 AT1G05660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051764 AT2G43890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031953 AT1G05650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043894 AT2G43880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043974 AT2G43860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026795 AT1G70500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6H9K0 plaa2 "Exopolygalacturonase" [Platanus x acerifolia (taxid:140101)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P48979PGLR_PRUPE3, ., 2, ., 1, ., 1, 50.57250.97470.9821N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.150.946
3rd Layer3.2.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
PLN02155394 PLN02155, PLN02155, polygalacturonase 1e-138
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 1e-102
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 2e-93
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 5e-93
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 2e-87
PLN03010409 PLN03010, PLN03010, polygalacturonase 1e-78
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 2e-75
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 4e-24
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 5e-06
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information 
 Score =  400 bits (1030), Expect = e-138
 Identities = 197/391 (50%), Positives = 269/391 (68%), Gaps = 3/391 (0%)

Query: 7   SLIFSIFLFTVSNNLNPSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTII 66
           S I    LFT+   ++ S++ S+V+NV+ FGAK +GV DST AF KAW  AC S  S  +
Sbjct: 4   SAITFPLLFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATV 63

Query: 67  YVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGG 126
            VP G +LL  + F G C+S  ITFQ+ GT+VAP DYR  G +  W+ F  V+  S++GG
Sbjct: 64  VVPTGTFLLKVITFGGPCKSK-ITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGG 122

Query: 127 ALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLV 186
             DA+    W+C+ + G  CP G  ++S  ++ +V I G+ S+NSQ+ H+ +N C +V+V
Sbjct: 123 TFDARANGFWSCRKS-GQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVV 181

Query: 187 EGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHG 246
              K++A G+SPNTDG H+Q S  V    S+++TGDDC++IG GT N  I ++ CGPGHG
Sbjct: 182 RNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHG 241

Query: 247 ISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQN 306
           +SIGSL K+++E+GV+NVTV  +VFTG+QNG+RIKSWARPS GFV+ V F D VM+NV+N
Sbjct: 242 VSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVEN 301

Query: 307 PIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCSAKYPCEGIRLYKV 366
           PIIIDQNYCP +  CP + SGVKIS + Y NI+GTS+T  A+K  CS   PC GI L  +
Sbjct: 302 PIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDI 361

Query: 367 NLSYLK-LVAQSSCNNVIGKALGIVQPNTCL 396
            L+Y K   A S C N +GK+LG++QP +CL
Sbjct: 362 KLTYNKGTPATSFCFNAVGKSLGVIQPTSCL 392

Length = 394
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 396
PLN02155394 polygalacturonase 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03010409 polygalacturonase 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.94
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.89
PLN02793443 Probable polygalacturonase 99.87
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.86
PLN02155394 polygalacturonase 99.84
PLN02218431 polygalacturonase ADPG 99.84
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.84
PLN03003456 Probable polygalacturonase At3g15720 99.84
PLN03010409 polygalacturonase 99.82
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.8
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.73
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.35
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.33
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 99.33
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 99.21
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.98
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.75
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.7
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.67
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 98.56
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.53
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.51
smart00656190 Amb_all Amb_all domain. 98.5
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.48
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.48
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.47
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.44
PLN02176340 putative pectinesterase 98.34
PLN02634359 probable pectinesterase 98.31
PLN02480343 Probable pectinesterase 98.31
PLN02497331 probable pectinesterase 98.31
PLN02773317 pectinesterase 98.3
smart00656190 Amb_all Amb_all domain. 98.26
PLN02682369 pectinesterase family protein 98.25
PLN02170529 probable pectinesterase/pectinesterase inhibitor 98.21
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.2
PRK10531422 acyl-CoA thioesterase; Provisional 98.2
PLN02665366 pectinesterase family protein 98.09
PLN02484587 probable pectinesterase/pectinesterase inhibitor 98.07
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.06
PLN02916502 pectinesterase family protein 98.01
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.99
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.97
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.93
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.93
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.92
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.91
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.88
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.87
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.86
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.84
PLN02671359 pectinesterase 97.83
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.83
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.81
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.79
PLN02301548 pectinesterase/pectinesterase inhibitor 97.79
PLN02304379 probable pectinesterase 97.79
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.78
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.77
PLN02432293 putative pectinesterase 97.75
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.69
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.68
PLN02197588 pectinesterase 97.62
PLN02314586 pectinesterase 97.6
PF1221867 End_N_terminal: N terminal extension of bacterioph 97.21
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.21
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.04
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 96.7
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 96.41
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.76
PLN02480343 Probable pectinesterase 95.35
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 94.59
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 93.62
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 93.4
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 93.01
PLN02773317 pectinesterase 89.94
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 88.7
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 88.26
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 87.48
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 86.83
PLN02665366 pectinesterase family protein 86.83
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 85.52
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 85.11
PRK10531422 acyl-CoA thioesterase; Provisional 82.16
>PLN02155 polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=1.5e-77  Score=580.31  Aligned_cols=371  Identities=51%  Similarity=0.972  Sum_probs=339.3

Q ss_pred             CCCCCeeeEEeeccccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeeccc
Q 045402           24 SAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPADY  103 (396)
Q Consensus        24 ~~~~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~~  103 (396)
                      +..+++.+||+||||++||++|||+|||+|++++|++.+|++|+||+|+|++++|.|.++||| +++|+++|+|+++.++
T Consensus        21 ~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcks-nv~l~l~G~l~~~~d~   99 (394)
T PLN02155         21 SSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKS-KITFQVAGTVVAPEDY   99 (394)
T ss_pred             cccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCC-CceEEEeeEEECcccc
Confidence            345567999999999999999999999999987899889999999999999999999998889 9999999999999888


Q ss_pred             cccCCCcceEEEeceeceEEeceeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCcceEEEeceec
Q 045402          104 RVLGQADNWLSFEGVSGVSIIGGALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQD  183 (396)
Q Consensus       104 ~~~~~~~~~i~~~~~~nv~I~GG~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~n  183 (396)
                      ..|.....|+.+.+.+|+.|+||+|||+|+.||.....+ ...+.+|+++.|.+|+|++|++++++++|.|++++..|+|
T Consensus       100 ~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~-~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~n  178 (394)
T PLN02155        100 RTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSG-QNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTN  178 (394)
T ss_pred             ccccccceeEEEECcCCCEEEccEEecCceeEEEcccCC-CCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECeee
Confidence            888655679999999999999999999999999864432 3445578899999999999999999999999999999999


Q ss_pred             EEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccCCCCCEEE
Q 045402          184 VLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQN  263 (396)
Q Consensus       184 v~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~~~~~i~n  263 (396)
                      |+|++++|.++.+.+|+||||+.+|+||+|+||.+.++||||+++++++||+|+||+|..+||++|||+|.++..+.++|
T Consensus       179 v~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~n  258 (394)
T PLN02155        179 VVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVEN  258 (394)
T ss_pred             EEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEEE
Confidence            99999999999888999999999999999999999999999999999999999999999999999999988766788999


Q ss_pred             EEEEeeEEecCCeEEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEecC
Q 045402          264 VTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSS  343 (396)
Q Consensus       264 i~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~~~ni~~~~~  343 (396)
                      |+|+||+|.++.+|++||+|.+.++|.|+||+|+||+|+++++||.|++.|+.....|+...+.+.|+||+|+||+++..
T Consensus       259 V~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~  338 (394)
T PLN02155        259 VTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSA  338 (394)
T ss_pred             EEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEec
Confidence            99999999999999999998654679999999999999999999999999987544455555668999999999999987


Q ss_pred             CCceEEEecCCCCceecEEEEeEEEEeCC-cccceeeecccccccceecCCCCC
Q 045402          344 TPIAIKFNCSAKYPCEGIRLYKVNLSYLK-LVAQSSCNNVIGKALGIVQPNTCL  396 (396)
Q Consensus       344 ~~~~~~i~~~~~~~i~~i~~~ni~i~~~~-~~~~~~c~~v~~~~~~~~~~~~~~  396 (396)
                      ...++.+.|.+..||+||+|+||++...+ .+..+.|.||+|.+.+++.|++|+
T Consensus       339 ~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~  392 (394)
T PLN02155        339 TQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCL  392 (394)
T ss_pred             CCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCccccc
Confidence            67799999999999999999999999886 445799999999999988999996

>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 5e-20
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 3e-15
1nhc_A336 Structural Insights Into The Processivity Of Endopo 4e-12
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 1e-11
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 2e-11
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 1e-10
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 9e-10
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 1e-09
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 4e-09
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 121/263 (46%), Gaps = 29/263 (11%)
Query: 125 GGALDAKGTSLW--ACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQ 182
           G  L  K  S W  A  A       N    + I  S N ++  +  +NS  +H+V +   
Sbjct: 124 GVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGD 183
Query: 183 DVLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISI----GRG-TNNLWIE 237
                   I     + NTDGI    S+N+ I  S+I TGDD ++I    GR  T N+ I 
Sbjct: 184 GFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISIL 243
Query: 238 RVTCGPGHGISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFI 297
               G GHG+SIGS     +  GV NVTV      GT NGLRIKS  + + G V GVR+ 
Sbjct: 244 HNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKS-DKSAAGVVNGVRYS 297
Query: 298 DAVMQNVQNPIIIDQNY-CPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCS-AK 355
           + VM+NV  PI+ID  Y      N P        SDI + ++  TS T   +  N   AK
Sbjct: 298 NVVMKNVAKPIVIDTVYEKKEGSNVPDW------SDITFKDV--TSETKGVVVLNGENAK 349
Query: 356 YPCEGIRLYKVNLSYLKLVAQSS 378
            P E      V +  +KL + S+
Sbjct: 350 KPIE------VTMKNVKLTSDST 366
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-113
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-108
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-102
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 6e-95
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 2e-94
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 2e-93
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 1e-91
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 3e-88
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 3e-86
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 7e-86
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 2e-34
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 5e-30
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 5e-27
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 1e-19
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 1e-14
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 7e-11
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 2e-09
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 3e-09
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 2e-04
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 2e-05
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  337 bits (865), Expect = e-113
 Identities = 79/383 (20%), Positives = 144/383 (37%), Gaps = 37/383 (9%)

Query: 23  PSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGS-VAFK 81
            +   +   N+L +GA  +   D   A   AWAA C S    ++Y+P G Y L + V   
Sbjct: 13  STKGATKTCNILSYGAVADNSTDVGPAITSAWAA-CKSG--GLVYIPSGNYALNTWVTLT 69

Query: 82  GECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIG----GALDAKGTSLWA 137
           G         Q+DG +           + N ++    +   +      GA+   G    A
Sbjct: 70  GGS---ATAIQLDGIIYRTGTA-----SGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHA 121

Query: 138 CKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDS 197
                      GA  L +T+  + S+  ++ +++  +H  ++ C D  V    I   G+ 
Sbjct: 122 -------EGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRG-GNE 173

Query: 198 PNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMD 257
              DGI +  S N+ +    +   D+C+++    NN+ +E + C    G ++GSLG D  
Sbjct: 174 GGLDGIDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD-- 230

Query: 258 EEGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPH 317
              V ++         +     IKS     +G V  V   + +       + ID  +   
Sbjct: 231 -TDVTDIVYRNVYTWSSNQMYMIKSN--GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSM 287

Query: 318 NLNCPGQVSGVKISDIIYWNIRGTSS---TPIAIKFNCSAKYPCEGIRLYKVNLSYL-KL 373
                    GV++++I   N +GT +   T   I+  CS   PC  + L  + +      
Sbjct: 288 TAVAG---DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGS 344

Query: 374 VAQSSCNNVIGKALGIVQPNTCL 396
                C +  G    +   ++  
Sbjct: 345 SELYLCRSAYGSGYCLKDSSSHT 367
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.96
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.94
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.91
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.9
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.87
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.87
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.86
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.86
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.86
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.86
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.82
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.81
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.79
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.79
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.69
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.54
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.53
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.44
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.44
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.42
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.35
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.33
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.27
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.85
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.83
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.77
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.71
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.69
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.69
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.68
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.65
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.65
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.62
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.6
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.58
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.55
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.5
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.46
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.42
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.4
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.31
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.25
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.23
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.2
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.18
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.14
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.12
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.1
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.97
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.96
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.69
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.49
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.48
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 97.05
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.86
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.81
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.81
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.42
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 96.16
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 96.0
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 95.71
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 95.7
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.85
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 93.12
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 90.85
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 87.41
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=2.2e-63  Score=492.86  Aligned_cols=338  Identities=24%  Similarity=0.369  Sum_probs=297.1

Q ss_pred             CCCCCCeeeEEeeccccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCcEEEeccccccCcccCccEEEEEcCEEEeecc
Q 045402           23 PSAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGSVAFKGECQSSDITFQIDGTLVAPAD  102 (396)
Q Consensus        23 ~~~~~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~~p~G~Y~~~~i~l~~~~~s~~v~l~~~G~l~~~~~  102 (396)
                      .+..+++.++|++|||++||++|||+|||+||++ |++.+|++|+||+|+|+++++.|+    | +++|+++|+|+++.+
T Consensus        20 ~p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~-c~~~ggg~v~vP~G~yl~~~l~l~----s-~v~l~l~gtL~~s~d   93 (448)
T 3jur_A           20 EPQIPDREVNLLDFGARGDGRTDCSESFKRAIEE-LSKQGGGRLIVPEGVFLTGPIHLK----S-NIELHVKGTIKFIPD   93 (448)
T ss_dssp             CCCCCSCEEEGGGGTCCCEEEEECHHHHHHHHHH-HHHHTCEEEEECSSEEEESCEECC----T-TEEEEESSEEEECCC
T ss_pred             CCCCCCcEEEEEecccCCCCCeecHHHHHHHHHh-hhhcCCeEEEECCCcEEEeeeEeC----C-CcEEEEEEEEEecCC
Confidence            3445678999999999999999999999999975 676788999999999999999998    7 999999999999999


Q ss_pred             cccc-CCC------------cceEEEeceeceEEec-eeEeCCC--Cccccccccc------------------------
Q 045402          103 YRVL-GQA------------DNWLSFEGVSGVSIIG-GALDAKG--TSLWACKAAA------------------------  142 (396)
Q Consensus       103 ~~~~-~~~------------~~~i~~~~~~nv~I~G-G~idg~g--~~~~~~~~~~------------------------  142 (396)
                      +.+| +..            .+||.+.+.+||+|+| |+|||+|  +.||+.....                        
T Consensus        94 ~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  173 (448)
T 3jur_A           94 PERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAER  173 (448)
T ss_dssp             GGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHH
T ss_pred             HHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhcc
Confidence            9888 321            3689999999999999 9999999  8899743210                        


Q ss_pred             ---------CCCCCCCceeEEEEeecceEEeceEEecCCcceEEEeceecEEEEeEEEEcCCCCCCCCceeeecceeEEE
Q 045402          143 ---------GTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHIQQSRNVKI  213 (396)
Q Consensus       143 ---------~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~nv~I~~~~i~~~~~~~~~DGi~~~~s~nv~I  213 (396)
                               +.....||++|.|.+|+|++|+|++++++|.|++++..|+||+|++++|.++  .+|+|||++.+|+||+|
T Consensus       174 ~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I  251 (448)
T 3jur_A          174 GTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLI  251 (448)
T ss_dssp             TCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEE
T ss_pred             cCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEE
Confidence                     0123468999999999999999999999999999999999999999999986  57999999999999999


Q ss_pred             EccEEecCCceEEecCC-----------CeeEEEEeeee--cCCc-eEEEEeccccCCCCCEEEEEEEeeEEecCCeEEE
Q 045402          214 RSSSIKTGDDCISIGRG-----------TNNLWIERVTC--GPGH-GISIGSLGKDMDEEGVQNVTVWKTVFTGTQNGLR  279 (396)
Q Consensus       214 ~n~~i~~~dD~i~~~~~-----------s~ni~i~n~~~--~~~~-gi~igs~~~~~~~~~i~ni~i~n~~~~~~~~gi~  279 (396)
                      +||++.++||||+++++           ++||+|+||+|  ..+| |++|||++    .+.++||+|+||+|.++.+|++
T Consensus       252 ~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v~n~~~~~t~~Gir  327 (448)
T 3jur_A          252 EKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVARNNVYMNVERALR  327 (448)
T ss_dssp             ESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEEESCEEESCSEEEE
T ss_pred             EeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEEEEEEEecccceEE
Confidence            99999999999999987           79999999999  5566 79999973    5689999999999999999999


Q ss_pred             EEeecCCCCceEEeEEEEeEEEecCCccE-EEEeecCCCCCCCCCCCcceEEEeEEEEeEEEecCCCceEEEecCCCCce
Q 045402          280 IKSWARPSNGFVKGVRFIDAVMQNVQNPI-IIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSSTPIAIKFNCSAKYPC  358 (396)
Q Consensus       280 i~~~~~~~~g~v~nI~~~ni~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~~i~ni~~~ni~~~~~~~~~~~i~~~~~~~i  358 (396)
                      ||++.+ ++|.|+||+|+||+|+++.+++ .|++.|+..   +  +...+.|+||+|+||+++. ...++.+.|.+..||
T Consensus       328 IKt~~g-~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~---~--~~~~~~i~nI~~~NI~~t~-~~~~i~i~g~~~~p~  400 (448)
T 3jur_A          328 LKTNSR-RGGYMENIFFIDNVAVNVSEEVIRINLRYDNE---E--GEYLPVVRSVFVKNLKATG-GKYAVRIEGLENDYV  400 (448)
T ss_dssp             EECCTT-TCSEEEEEEEESCEEEEESSEEEEEESCGGGC---C--CSCCCEEEEEEEESCEEEE-CSEEEEEECBTTBCE
T ss_pred             EEEEcC-CCceEeeEEEEEEEEECCccccEEEEeeccCC---C--CCCCceEEEEEEEeEEEEe-cceEEEEEeCCCCCE
Confidence            999976 6799999999999999999988 999988753   1  2234689999999999998 466999999999999


Q ss_pred             ecEEEEeEEEEeCCcccceeeec
Q 045402          359 EGIRLYKVNLSYLKLVAQSSCNN  381 (396)
Q Consensus       359 ~~i~~~ni~i~~~~~~~~~~c~~  381 (396)
                      +||+|+||+++..+  ....|.+
T Consensus       401 ~~I~~~nv~i~~~~--~~~~~~~  421 (448)
T 3jur_A          401 KDILISDTIIEGAK--ISVLLEF  421 (448)
T ss_dssp             EEEEEEEEEEESCS--EEEEEEE
T ss_pred             eeEEEEEEEEEccc--cceeEec
Confidence            99999999998543  2345665
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 396
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 9e-77
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 5e-73
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 5e-71
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 5e-63
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 1e-57
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-57
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 4e-54
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 2e-49
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  241 bits (617), Expect = 9e-77
 Identities = 77/381 (20%), Positives = 142/381 (37%), Gaps = 37/381 (9%)

Query: 24  SAATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLGS-VAFKG 82
           +   +   N+L +GA  +   D   A   AWAA        ++Y+P G Y L + V   G
Sbjct: 14  TKGATKTCNILSYGAVADNSTDVGPAITSAWAAC---KSGGLVYIPSGNYALNTWVTLTG 70

Query: 83  ECQSSDITFQIDGTLVAPADYRVLGQADNWLSFEGVSGVSII----GGALDAKGTSLWAC 138
                    Q+DG +           + N ++    +   +      GA+   G    A 
Sbjct: 71  GS---ATAIQLDGIIYRTGT-----ASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAE 122

Query: 139 KAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSP 198
                     GA  L +T+  + S+  ++ +++  +H  ++ C D  V    I   G+  
Sbjct: 123 -------GTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIR-GGNEG 174

Query: 199 NTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDE 258
             DGI +  S N+ +    +   D+C+++    NN+ +E + C    G ++GSLG D   
Sbjct: 175 GLDGIDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD--- 230

Query: 259 EGVQNVTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHN 318
             V ++         +     IKS     +G V  V   + +       + ID  +    
Sbjct: 231 TDVTDIVYRNVYTWSSNQMYMIKSN--GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMT 288

Query: 319 LNCPGQVSGVKISDIIYWNIRGTSS---TPIAIKFNCSAKYPCEGIRLYKVNLSYLKL-V 374
                   GV++++I   N +GT +   T   I+  CS   PC  + L  + +       
Sbjct: 289 AVAG---DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSS 345

Query: 375 AQSSCNNVIGKALGIVQPNTC 395
               C +  G    +   ++ 
Sbjct: 346 ELYLCRSAYGSGYCLKDSSSH 366
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.86
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.85
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.84
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.83
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.81
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.74
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.7
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.64
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.62
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.7
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.64
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.63
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.61
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 98.34
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.21
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 98.05
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 98.01
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.9
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.87
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.82
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.77
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.68
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.65
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.3
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.23
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.14
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.74
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 95.82
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 94.96
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 91.79
d1v0ea1 516 Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 81.6
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 81.59
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 81.46
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=7e-60  Score=463.74  Aligned_cols=337  Identities=23%  Similarity=0.376  Sum_probs=289.8

Q ss_pred             CCCeeeEEeeccccCCCCcccHHHHHHHHHHHhhcCCCcEEEEcCcEEEec-cccccCcccCccEEEEEcCEEEeecccc
Q 045402           26 ATSSVYNVLRFGAKGNGVIDSTEAFAKAWAAACASNESTIIYVPKGRYLLG-SVAFKGECQSSDITFQIDGTLVAPADYR  104 (396)
Q Consensus        26 ~~~~~~~v~d~Ga~~dg~tddt~aiq~Ai~~a~~~~~g~~v~~p~G~Y~~~-~i~l~~~~~s~~v~l~~~G~l~~~~~~~  104 (396)
                      ++.+++||+||||+|||++|||+|||+|++ ||+  +|++|+||+|+|++. ++.|+++  + ++.|+++|+|++..+..
T Consensus        16 ~~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~--~gg~V~iP~Gty~l~~~i~l~g~--~-~~~l~~~G~i~~~~~~~   89 (422)
T d1rmga_          16 GATKTCNILSYGAVADNSTDVGPAITSAWA-ACK--SGGLVYIPSGNYALNTWVTLTGG--S-ATAIQLDGIIYRTGTAS   89 (422)
T ss_dssp             HHHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHT--BTCEEEECSSEEEECSCEEEESC--E-EEEEEECSEEEECCCCS
T ss_pred             CCCcEEEEecCCCCCCCCccCHHHHHHHHH-hcC--CCCEEEECCCcEEEeCcEEEcCC--C-ceEEEEeEEEEeccCCc
Confidence            346799999999999999999999999996 575  478999999999765 5888875  6 89999999998876554


Q ss_pred             ccCCCcceEEEeceeceEEec-eeEeCCCCcccccccccCCCCCCCceeEEEEeecceEEeceEEecCCcceEEEeceec
Q 045402          105 VLGQADNWLSFEGVSGVSIIG-GALDAKGTSLWACKAAAGTTCPNGATTLSITNSNNVSIKGLLSLNSQMYHIVINRCQD  183 (396)
Q Consensus       105 ~~~~~~~~i~~~~~~nv~I~G-G~idg~g~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~~~~~~~i~~~~~~n  183 (396)
                      .+.  ..+....+.+.+.+.| |+|||+|..||...       ..+|+++.|.+|+|++|+++++++++.|++.+..|++
T Consensus        90 ~~~--~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~-------~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c~~  160 (422)
T d1rmga_          90 GNM--IAVTDTTDFELFSSTSKGAVQGFGYVYHAEG-------TYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSD  160 (422)
T ss_dssp             SEE--EEEEEEEEEEEECSSSCCEEECCTHHHHTTT-------CCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEEE
T ss_pred             cCE--EEeccCccEEEEEeecceEEecCcceecCCC-------CCCCcEEEEEeeeeeEEECcEecCCCceEEEEecccc
Confidence            322  1223334445566677 99999999999632       3478999999999999999999999999999999999


Q ss_pred             EEEEeEEEEcCCCCCCCCceeeecceeEEEEccEEecCCceEEecCCCeeEEEEeeeecCCceEEEEeccccCCCCCEEE
Q 045402          184 VLVEGAKIIAAGDSPNTDGIHIQQSRNVKIRSSSIKTGDDCISIGRGTNNLWIERVTCGPGHGISIGSLGKDMDEEGVQN  263 (396)
Q Consensus       184 v~I~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~~~~~s~ni~i~n~~~~~~~gi~igs~~~~~~~~~i~n  263 (396)
                      ++|+|++|.++ +.+|+|||++.+ +||+|+||++.++||||+++++++||+|+|++|..+||+++|+++.   ...++|
T Consensus       161 v~i~nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~---~~~V~n  235 (422)
T d1rmga_         161 GEVYNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTD  235 (422)
T ss_dssp             EEEEEEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECT---TEEEEE
T ss_pred             EEEEeeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccC---CCCEEE
Confidence            99999999985 457999999975 6899999999999999999999999999999999999999999864   346999


Q ss_pred             EEEEeeEEecCCeEEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEecC
Q 045402          264 VTVWKTVFTGTQNGLRIKSWARPSNGFVKGVRFIDAVMQNVQNPIIIDQNYCPHNLNCPGQVSGVKISDIIYWNIRGTSS  343 (396)
Q Consensus       264 i~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~ni~~~ni~~~~~  343 (396)
                      |+|+||++.++.++++++++.  +.|.|+||+|+||+++++.+||.|++.|+.....   ....+.|+||+|+||+++..
T Consensus       236 V~v~n~~~~~s~~g~~ik~~~--g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~---~~~~v~isnIt~~Ni~GT~~  310 (422)
T d1rmga_         236 IVYRNVYTWSSNQMYMIKSNG--GSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV---AGDGVQLNNITVKNWKGTEA  310 (422)
T ss_dssp             EEEEEEEEESSSCSEEEEEBB--CCEEEEEEEEEEEEEEEESCSEEEETBCTTSCCB---SSSCCEEEEEEEEEEEEEES
T ss_pred             EEEEeEEEeCCCceEEEEEcC--CCceecceEEEEEEEecccccEEEecccCCCCCC---CCCCeEEEEEEEEeEEEEec
Confidence            999999999999999999874  4689999999999999999999999998864332   22356899999999999863


Q ss_pred             ---CCceEEEecCCCCceecEEEEeEEEEeCC-cccceeeeccccccc
Q 045402          344 ---TPIAIKFNCSAKYPCEGIRLYKVNLSYLK-LVAQSSCNNVIGKAL  387 (396)
Q Consensus       344 ---~~~~~~i~~~~~~~i~~i~~~ni~i~~~~-~~~~~~c~~v~~~~~  387 (396)
                         .+.++.+.|++..||+||+|+||+|+..+ ..+.+.|.|++|+++
T Consensus       311 ~~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~g~~~~~~C~na~G~~~  358 (422)
T d1rmga_         311 NGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSSELYLCRSAYGSGY  358 (422)
T ss_dssp             CTTTSCSEEEECBTTBCEEEEEEEEEEEEESSSSCEEEEEESEEEEST
T ss_pred             CCcccccEEEEcCCCCCCcceEEEEEEEEcCCCCCcceEEECceeeEE
Confidence               35689999999999999999999999877 456689999998765
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure