Citrus Sinensis ID: 045405

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MISSSSMSLFGLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWINILDGRSISFMSHN
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccEEEEEEEcccccccccccccccEEEEEEEcEEEEEEEcccccEEEEEEccccEEEEccccEEEEEEcccccEEEEEEEccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEEccccccEEcccccccHHHccHHHHHHccccccccccccccEEEEEcccccHHHcccccEEEEEEEccccEEEEEEcccccEEEEEEEcEEEEEEEHHcccEEEEEEEcccEEEEcccccEEEEEcccccEEEEEEEcccccccEEHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHccccccEEEccccEEEEcccc
Coil and Loop (DISEMBL)
missssmsLFGLLFGLIVLLmlpfpsrasdpdplqdvCIADLnatisingfpckpasnvtsddfftdfskdpttfdVFKRAvtfgdvfgfpavntqGVALFRIdldvgginpphthprgteagivTRGTVLVGLVTtnntffskvltpgkvfliPRALVHFQLnvgnepatfipifntqnpgvsdsigtlfdttppvpnevltksfrvGDDVINTIRAARAQSSWINILDGRSISFMSHN
Flexible Loop (DISEMBL)
MISSSSMSLFGLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPhthprgteagivTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRaaraqsswinildgrsisfmshn
Low Complexity Region (SEG)
missssmslfgllfglivllmlPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVtsddfftdfskdpttfdVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIvtrgtvlvglvttnntFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWINILDGRSISFMSHN
Disordered region (IsUnstruct)
********LFGLLFGLIVLLMLPFPSR****DPLQDVCIADLNATISINGFPCKPASNVTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWINILDGRS*******
Disordered Region (DISOPRED)
**********GLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTDFS**********RAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRA**********************
Disordered Region (DISEMBL)
MISSSSMSLFGLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWINILDGRSISFMSHN
Disordered Region (DISPRO)
*****SMSLFGLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWINILDGRSISFMS**
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISSSSMSLFGLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWINILDGRSISFMSHN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q9LMC9	220	Germin-like protein subfa	yes	no	0.854	0.931	0.480	2e-47
P92995	220	Germin-like protein subfa	no	no	0.891	0.972	0.459	6e-46
Q851K0	227	Germin-like protein 3-5 O	yes	no	0.858	0.907	0.460	3e-45
Q94JF3	224	Germin-like protein 1-2 O	no	no	0.791	0.848	0.455	6e-45
Q6I544	221	Germin-like protein 5-1 O	no	no	0.820	0.891	0.465	1e-44
Q9FZ27	219	Germin-like protein subfa	no	no	0.812	0.890	0.459	1e-44
Q851J9	229	Putative germin-like prot	yes	no	0.858	0.899	0.451	2e-44
P94014	219	Germin-like protein subfa	no	no	0.812	0.890	0.479	3e-44
Q851K1	229	Germin-like protein 3-6 O	yes	no	0.858	0.899	0.446	8e-44
Q851J8	227	Germin-like protein 3-3 O	no	no	0.791	0.837	0.467	1e-43

>sp|Q9LMC9|GLT2_ARATH Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1

 Score =  189 bits (480), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/206 (48%), Positives = 133/206 (64%), Gaps = 1/206 (0%)

Query: 16  LIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTDFSKDPTTF 75
           L+V+ +   PS +SD DPLQD C+ DL A+ SINGFPCK +S   SD FF+       T 
Sbjct: 15  LLVICVFVIPSLSSDSDPLQDFCVGDLKASPSINGFPCK-SSVSASDFFFSGLGGPLNTS 73

Query: 76  DVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLV 135
                AV+  +V  FP +NT G+++  ++   GG+NPPH+HPR TEAG+V  G+V VG +
Sbjct: 74  TPNGVAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFL 133

Query: 136 TTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTP 195
           TTNNT FSKVL  G++F++PR LVHFQ NVG   A  I  FN+Q PG +    TLF + P
Sbjct: 134 TTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSNP 193

Query: 196 PVPNEVLTKSFRVGDDVINTIRAARA 221
            +PN VLTK+FR  D  +N +++  A
Sbjct: 194 TIPNAVLTKTFRTDDVTVNKLKSKFA 219

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.
Arabidopsis thaliana (taxid: 3702)

>sp|P92995|GLT1_ARATH Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2

 Score =  184 bits (466), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 102/222 (45%), Positives = 134/222 (60%), Gaps = 8/222 (3%)

Query: 1   MISSSSMSLFGLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVT 60
            I S+ +  F L+F L V+     PS +SD DPLQD C+ DL A+ SINGFPCK A  V+
Sbjct: 5   QIPSALLRSFLLMFCLFVI-----PSLSSDSDPLQDFCVGDLKASASINGFPCKSA--VS 57

Query: 61  SDDFFTDFSKDPT-TFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRG 119
           + DFF      P  T +     V   +V  FP +NT G+++  ++L  GG+NPPH HPR 
Sbjct: 58  ASDFFYSGLGGPLDTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRA 117

Query: 120 TEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQ 179
           TE G V  G+V VG ++TNNT FSKVL  G+ F+IPR LVHFQ NVG   A  I  FN+Q
Sbjct: 118 TEVGTVIEGSVFVGFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQ 177

Query: 180 NPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARA 221
            PG      TLF + P +PN VLT++FR  D  +  +++  A
Sbjct: 178 LPGAVVLPSTLFGSKPEIPNAVLTRAFRTDDTTVQNLKSKFA 219

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Arabidopsis thaliana (taxid: 3702)

>sp|Q851K0|GL35_ORYSJ Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1

 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 99/215 (46%), Positives = 134/215 (62%), Gaps = 9/215 (4%)

Query: 11  GLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTDFSK 70
           GL+F +++L   P   RA+D DPLQD C+ADLN+ +++NG  CKPAS    +  F+  SK
Sbjct: 9   GLVFVVLLLQQAPVLIRATDADPLQDFCVADLNSEVTVNGHACKPASAAGDEFLFS--SK 66

Query: 71  DPTTFDVFKRA----VTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVT 126
             T  DV        VT  DV  +P VNT GV++ R+D   GG NPPH HPR TE GIV 
Sbjct: 67  IATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVL 126

Query: 127 RGTVLVGLVTT---NNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGV 183
           RG +LVG++ T    N ++SKV+  G+ F+IPR L+HFQ NVG   AT +  FN+QNPG+
Sbjct: 127 RGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGI 186

Query: 184 SDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRA 218
                TLF + PP+P  VL K+ RV   V+  +++
Sbjct: 187 VFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKS 221

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94JF3|GL12_ORYSJ Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1

 Score =  181 bits (458), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 87/191 (45%), Positives = 126/191 (65%), Gaps = 1/191 (0%)

Query: 29  SDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTD-FSKDPTTFDVFKRAVTFGDV 87
           +D  PLQD+C+ADL A  +++GFPCKP ++V SDDFF D   + P+T + F    T   V
Sbjct: 29  ADSPPLQDICVADLRAATAVDGFPCKPTASVVSDDFFCDAIVQAPSTSNPFGVNSTRATV 88

Query: 88  FGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLT 147
             FP +NT G+++ R DL  GG+NPPH+HPR +E  +V  G V+VG  T  N  FSKV+ 
Sbjct: 89  SAFPGLNTLGLSITRTDLAPGGLNPPHSHPRASELVLVLSGEVMVGFTTAANRLFSKVVR 148

Query: 148 PGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFR 207
             ++F++PR L HFQLNVG   A+F+ +F++Q+PG+      LF T P +P EVL K+F 
Sbjct: 149 EKELFVVPRGLQHFQLNVGAGNASFVAMFDSQSPGLVTPTFALFATQPAMPMEVLAKTFL 208

Query: 208 VGDDVINTIRA 218
           +G+D +  I++
Sbjct: 209 MGEDEVGAIKS 219

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6I544|GL52_ORYSJ Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1

 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/200 (46%), Positives = 124/200 (62%), Gaps = 3/200 (1%)

Query: 23  PFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDF-FTDFSKDPTTFDVFKRA 81
           P PS A DPD LQD+C+ADL + + +NGF CK A  VT DDF F   +    T + +   
Sbjct: 20  PTPSTAGDPDLLQDICVADLTSAVKVNGFACKAA--VTEDDFYFKGLAAAGNTNNTYGSV 77

Query: 82  VTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF 141
           VT  +V   P +NT GV++ RID   GG+NPPHTHPR TE   V +GT+ VG +TT N  
Sbjct: 78  VTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTLDVGFITTANKL 137

Query: 142 FSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEV 201
           ++K ++ G VF+ PR L+HFQ N G+ PA  I  FN+Q PG      TLF  +P VP+ V
Sbjct: 138 YTKTISAGDVFVFPRGLLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFAASPEVPDGV 197

Query: 202 LTKSFRVGDDVINTIRAARA 221
           LTK+F+VG   +  I++  A
Sbjct: 198 LTKAFQVGTKEVEKIKSRLA 217

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FZ27|GL22_ARATH Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1

 Score =  179 bits (454), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/196 (45%), Positives = 117/196 (59%), Gaps = 1/196 (0%)

Query: 27  RASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFF-TDFSKDPTTFDVFKRAVTFG 85
           RA DPD LQD+C+AD +    +NGFPCK   N+T  DFF    SK          AVT  
Sbjct: 21  RAYDPDALQDLCVADKSHGTKLNGFPCKETLNITESDFFFAGISKPAVINSTMGSAVTGA 80

Query: 86  DVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKV 145
           +V   P +NT  V+L RID   GG+NPPHTHPR TE   V  G + VG +TT N  F+K 
Sbjct: 81  NVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGELEVGFITTANKLFTKT 140

Query: 146 LTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKS 205
           +  G+VF+ PR LVHFQ N G  PA+ +  FN+Q PG +    TLF   P +P +VLTK+
Sbjct: 141 IKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFAAEPALPEDVLTKT 200

Query: 206 FRVGDDVINTIRAARA 221
           F+VG  +++ I+   A
Sbjct: 201 FQVGSKMVDKIKERLA 216

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Arabidopsis thaliana (taxid: 3702)

>sp|Q851J9|GL34_ORYSJ Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/215 (45%), Positives = 134/215 (62%), Gaps = 9/215 (4%)

Query: 11  GLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTDFSK 70
           G++F +++L   P   RA+D DPLQD C+ADL++ +++NG  CKPAS    +  F+  SK
Sbjct: 11  GVVFVVLLLQQAPVLIRATDADPLQDFCVADLDSKVTVNGHACKPASAAGDEFLFS--SK 68

Query: 71  DPTTFDVFKRA----VTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVT 126
             T  DV        VT  DV  +P VNT GV++ R+D   GG NPPH HPR TE GIV 
Sbjct: 69  IATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVL 128

Query: 127 RGTVLVGLVTT---NNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGV 183
           RG +LVG++ T    N ++SKV+  G+ F+IPR L+HFQ NVG   AT +  FN+QNPG+
Sbjct: 129 RGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGI 188

Query: 184 SDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRA 218
                TLF + PP+P  VL K+ RV   V+  +++
Sbjct: 189 VFVPLTLFGSNPPIPTPVLVKALRVDTGVVELLKS 223

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P94014|GL21_ARATH Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana GN=GLP4 PE=2 SV=2

 Score =  178 bits (451), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/196 (47%), Positives = 123/196 (62%), Gaps = 1/196 (0%)

Query: 24  FPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTD-FSKDPTTFDVFKRAV 82
           F S ++DPD LQD+C+ADL + I INGFPCK A+ VTS DFF+   +K   T + F   V
Sbjct: 18  FISSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGALV 77

Query: 83  TFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFF 142
           T  +V   P +NT GV+L RID   GG+NPPHTHPR TE   V  GT+ VG +TT N   
Sbjct: 78  TGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTTANKLI 137

Query: 143 SKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVL 202
           S+ L  G VF  P+ LVHFQ N G+ PA+ I  FN+Q PG      TLF +TPPVP+ +L
Sbjct: 138 SQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLFGSTPPVPDNIL 197

Query: 203 TKSFRVGDDVINTIRA 218
            ++F+     +  I++
Sbjct: 198 AQAFQTSPGTVKHIKS 213

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Arabidopsis thaliana (taxid: 3702)

>sp|Q851K1|GL36_ORYSJ Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1

 Score =  177 bits (448), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 96/215 (44%), Positives = 133/215 (61%), Gaps = 9/215 (4%)

Query: 11  GLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTDFSK 70
           G++  +++L   P   RA+D DPLQD C+ADL++ +++NG  CKPAS    +  F+  SK
Sbjct: 11  GVVIVVLLLQQAPVLIRATDADPLQDFCVADLDSKVTVNGHACKPASAAGDEFLFS--SK 68

Query: 71  DPTTFDVFKRA----VTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVT 126
             T  DV        VT  DV  +P VNT GV++ R+D   GG NPPH HPR TE GIV 
Sbjct: 69  IATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVL 128

Query: 127 RGTVLVGLV---TTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGV 183
           RG +LVG++    T N ++SKV+  G+ F+IPR L+HFQ NVG   AT +  FN+QNPG+
Sbjct: 129 RGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGI 188

Query: 184 SDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRA 218
                TLF + PP+P  VL K+ RV   V+  +++
Sbjct: 189 VFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLKS 223

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q851J8|GL33_ORYSJ Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1

 Score =  176 bits (446), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 127/199 (63%), Gaps = 9/199 (4%)

Query: 27  RASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTDFSKDPTTFDVFKRA----V 82
           RA+DPDPLQD C+ADL++ +++NG+PCKP      +  F+  S+  T  DV        V
Sbjct: 25  RANDPDPLQDFCVADLDSEVTLNGYPCKPTPAAGDEFLFS--SRLATGGDVNANPNGSNV 82

Query: 83  TFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVT---TNN 139
           T  DV G+P VNT GV++ RID   GG NPPH HPR TE GIV RG +LVG++    T N
Sbjct: 83  TQLDVAGWPGVNTLGVSMNRIDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGN 142

Query: 140 TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPN 199
            ++S+V+  G+ F+IPR L+HFQ NVG   AT +  FN+QNPG+     TLF + PP+P 
Sbjct: 143 RYYSRVVRGGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPT 202

Query: 200 EVLTKSFRVGDDVINTIRA 218
            VL K+ RV   V+  +++
Sbjct: 203 PVLVKALRVDAGVVELLKS 221

May play a role in plant defense. Probably has no oxalate oxidase activity even if the active site is conserved.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
255540843	220	Rhicadhesin receptor precursor, putative	0.879	0.959	0.547	9e-62
225456602	225	PREDICTED: germin-like protein subfamily	0.895	0.955	0.537	4e-56
449441043	213	PREDICTED: germin-like protein subfamily	0.862	0.971	0.524	7e-56
147821092	522	hypothetical protein VITISV_027597 [Viti	0.804	0.369	0.546	2e-55
449440734	221	PREDICTED: germin-like protein subfamily	0.891	0.968	0.544	8e-55
224135689	217	predicted protein [Populus trichocarpa]	0.795	0.880	0.520	2e-51
196122046	218	germin-like protein 1 [Glycine max]	0.891	0.981	0.476	1e-47
25044823	222	germin-like protein [Ananas comosus]	0.85	0.918	0.492	9e-47
255638668	218	unknown [Glycine max]	0.891	0.981	0.472	9e-47
356572882	219	PREDICTED: germin-like protein 5-1-like	0.895	0.981	0.458	3e-46

>gi|255540843|ref|XP_002511486.1| Rhicadhesin receptor precursor, putative [Ricinus communis] gi|223550601|gb|EEF52088.1| Rhicadhesin receptor precursor, putative [Ricinus communis]

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 116/212 (54%), Positives = 154/212 (72%), Gaps = 1/212 (0%)

Query: 8   SLFGLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTD 67
           SLF LL   IVLL+LP    ++DPDPLQD C+ADL  +IS+NGFPCKPA+ +TSDDFF D
Sbjct: 5   SLFHLLCSSIVLLLLPMYINSADPDPLQDFCVADLKGSISVNGFPCKPAAEITSDDFFFD 64

Query: 68  -FSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVT 126
             SK+  T ++F  + T  +V  FP +NT G+++ R+D   GG+NPPH+HPR TE G+V 
Sbjct: 65  GLSKEGNTTNMFGWSATTANVLSFPGLNTLGISMNRVDFSPGGLNPPHSHPRATETGVVI 124

Query: 127 RGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDS 186
            G +LVG VTT+N F SKVL+PG++F++PR LVHFQLNVG   A     FN+  PG +  
Sbjct: 125 EGKLLVGFVTTSNVFHSKVLSPGQMFVVPRGLVHFQLNVGQGKALLFTAFNSHLPGSAVV 184

Query: 187 IGTLFDTTPPVPNEVLTKSFRVGDDVINTIRA 218
              LF +TP +PN+VLTK+F+VGDD+INTI++
Sbjct: 185 SANLFTSTPKIPNQVLTKAFQVGDDIINTIKS 216

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456602|ref|XP_002267507.1| PREDICTED: germin-like protein subfamily T member 2-like [Vitis vinifera]

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 116/216 (53%), Positives = 158/216 (73%), Gaps = 1/216 (0%)

Query: 4   SSSMSLFGLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDD 63
           +SS S   L+F L+V ++LP  SR++D DPLQD CIADLNAT+ +NGFPCKPAS VTSDD
Sbjct: 6   TSSTSPLSLIFSLLVYVVLPLVSRSADSDPLQDFCIADLNATVIVNGFPCKPASAVTSDD 65

Query: 64  FFTD-FSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEA 122
           FF D  SK+ +T ++F  +VT G+V  FP VNT G+++ R+D+  GG+N PH HPR +E+
Sbjct: 66  FFFDGLSKEGSTANIFGSSVTRGNVLSFPGVNTLGISMNRVDIAPGGMNAPHWHPRSSES 125

Query: 123 GIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPG 182
           G+V +G VLVG +TT N F+SK LT G++F+IP  LVHFQ N+G E A     FN+QNPG
Sbjct: 126 GVVIQGRVLVGFMTTGNVFYSKNLTVGQMFVIPIGLVHFQQNIGEEKALLFTAFNSQNPG 185

Query: 183 VSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRA 218
              +   LF +TP +PN+VLTK+F+V  +V+N I++
Sbjct: 186 SVVASVNLFGSTPSIPNDVLTKAFQVDANVVNGIKS 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441043|ref|XP_004138293.1| PREDICTED: germin-like protein subfamily T member 1-like [Cucumis sativus] gi|449477612|ref|XP_004155071.1| PREDICTED: germin-like protein subfamily T member 1-like [Cucumis sativus]

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 109/208 (52%), Positives = 147/208 (70%), Gaps = 1/208 (0%)

Query: 12  LLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTD-FSK 70
           LL   I L++LP PS ++DPDPLQD C+ADLNAT+S+ GFPCKP S VT DDFF D  SK
Sbjct: 2   LLVSFIFLILLPHPSSSTDPDPLQDFCVADLNATVSVTGFPCKPISEVTVDDFFYDGLSK 61

Query: 71  DPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTV 130
           +  T + F   +T G+V   P +NT G+++ RIDL  GG+NPPH HPR +E  IV +G V
Sbjct: 62  EGNTKNPFGFGLTPGNVHALPGLNTLGLSMNRIDLAPGGMNPPHLHPRASEIVIVLKGRV 121

Query: 131 LVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTL 190
           LVG +T +N ++ KVL  G++F+IPRALVHFQ NVG + A  +  FN+Q PG     G L
Sbjct: 122 LVGFLTVDNVYYHKVLKVGELFIIPRALVHFQYNVGRKKAVVLAGFNSQLPGGVLVAGNL 181

Query: 191 FDTTPPVPNEVLTKSFRVGDDVINTIRA 218
           F + PP+PN++L+K+ +V DDV+ TI++
Sbjct: 182 FASNPPIPNKILSKALQVNDDVVKTIKS 209

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821092|emb|CAN75382.1| hypothetical protein VITISV_027597 [Vitis vinifera]

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/194 (54%), Positives = 143/194 (73%), Gaps = 1/194 (0%)

Query: 26  SRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTD-FSKDPTTFDVFKRAVTF 84
           SR++D DPLQD C ADLNAT+ +NGFPCKPAS VTSDDFF D  SK+ +T ++F  +VT 
Sbjct: 325 SRSADSDPLQDFCXADLNATVIVNGFPCKPASAVTSDDFFFDGLSKEGSTANIFGSSVTR 384

Query: 85  GDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSK 144
           G+V  FP VNT G+++ R+D+  GG+N PH HPR +E+G+V +G VLVG +TT N F+SK
Sbjct: 385 GNVLSFPGVNTLGISMNRVDIAPGGMNAPHWHPRSSESGVVIQGRVLVGFMTTGNVFYSK 444

Query: 145 VLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTK 204
            LT G++F+IP  LVHFQ N+G E A     FN+QNPG   +   LF +TP +PN+VLTK
Sbjct: 445 NLTVGQMFVIPIGLVHFQQNIGEEKALLFTAFNSQNPGSVVASVNLFGSTPSIPNDVLTK 504

Query: 205 SFRVGDDVINTIRA 218
           +F+V  +V+N I++
Sbjct: 505 AFQVDANVVNGIKS 518

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440734|ref|XP_004138139.1| PREDICTED: germin-like protein subfamily T member 2-like [Cucumis sativus] gi|449477347|ref|XP_004154997.1| PREDICTED: germin-like protein subfamily T member 2-like [Cucumis sativus]

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 117/215 (54%), Positives = 158/215 (73%), Gaps = 1/215 (0%)

Query: 8   SLFGLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTD 67
           SL  +L   I+LL+LP+PS ++DPDPLQD C+ADLNAT+S+NGFPCKPAS VT+DDFF D
Sbjct: 7   SLLNMLVCFIILLLLPYPSLSADPDPLQDFCVADLNATVSLNGFPCKPASEVTADDFFFD 66

Query: 68  -FSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVT 126
             SK+  T + F   VT G+V  FP +NT G+++ R+DL  GGIN PH+HPR TE+ +V 
Sbjct: 67  GLSKEGNTDNPFGFGVTQGNVLTFPGLNTLGLSMNRVDLARGGINAPHSHPRATESIVVI 126

Query: 127 RGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDS 186
           +G VLVG V+T++ ++ KVLT G++F++PR LVHFQ NVG+  AT I  FN+Q PG    
Sbjct: 127 KGKVLVGFVSTSSVYYYKVLTVGQMFVVPRGLVHFQYNVGHGKATLITAFNSQLPGAVVV 186

Query: 187 IGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARA 221
             TLF + PP+P E+LTK+F+V   VIN+I++  A
Sbjct: 187 SRTLFASNPPLPVEILTKAFQVDASVINSIKSKFA 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135689|ref|XP_002322136.1| predicted protein [Populus trichocarpa] gi|222869132|gb|EEF06263.1| predicted protein [Populus trichocarpa]

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 100/192 (52%), Positives = 139/192 (72%), Gaps = 1/192 (0%)

Query: 28  ASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTD-FSKDPTTFDVFKRAVTFGD 86
           ++DPD LQD C+ADL A +S+NGFPCKP + VTSDDFF D  SK+  T ++F  +VT  +
Sbjct: 22  SADPDLLQDFCVADLKAPLSVNGFPCKPEAKVTSDDFFFDGLSKEGNTTNIFGWSVTAAN 81

Query: 87  VFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVL 146
           V  FP +N+ G+++ R+D   GG+NPPH+HPR TE G++  G +LVG VTT+N F SKVL
Sbjct: 82  VLAFPGLNSLGISMNRVDFAPGGLNPPHSHPRATETGVIIEGKLLVGFVTTSNVFHSKVL 141

Query: 147 TPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSF 206
           T G++F++PR LVHFQLNVG   A     FN+  PG +    TLF + P +P++VLTK+F
Sbjct: 142 TVGQMFVVPRGLVHFQLNVGEGKALLFTAFNSHLPGSAVVPTTLFASRPSIPDDVLTKAF 201

Query: 207 RVGDDVINTIRA 218
           +VG+DVI+ I++
Sbjct: 202 QVGNDVIDNIKS 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|196122046|gb|ACG69497.1| germin-like protein 1 [Glycine max]

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/216 (47%), Positives = 135/216 (62%), Gaps = 2/216 (0%)

Query: 7   MSLFGLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFT 66
           M L G L  + + L+L   S ASDPDPLQD+C+ADL + + +NGF CK A+ V + DFF+
Sbjct: 1   MKLTGFLQAVTLALVLATVS-ASDPDPLQDLCVADLASAVKVNGFTCKDAAKVNASDFFS 59

Query: 67  DFSKDP-TTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIV 125
           D    P  T + +   VT  +V   P +NT GV+L RID   GGINPPHTHPR TE   V
Sbjct: 60  DILAKPGATNNTYGSLVTGANVQKIPGLNTLGVSLSRIDYAPGGINPPHTHPRATEVVFV 119

Query: 126 TRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSD 185
             GT+ VG +TT N   SK ++ G++F+ P+ LVHFQ N G E A+ I  FN+Q PG   
Sbjct: 120 LEGTLDVGFITTANVLISKSISKGEIFVFPKGLVHFQKNNGKEQASVIAAFNSQLPGTQS 179

Query: 186 SIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARA 221
              TLF  TPPVP+ VLTK+F+VG   +  I++  A
Sbjct: 180 IALTLFAATPPVPDNVLTKAFQVGTKEVEKIKSRLA 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|25044823|gb|AAM28275.1| germin-like protein [Ananas comosus]

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 103/209 (49%), Positives = 142/209 (67%), Gaps = 5/209 (2%)

Query: 12  LLFGLIVLLMLPFPSRASDPDPLQDVCIADLNAT-ISINGFPCKPASNVTSDDFF-TDFS 69
           +LF  I L++    S  +DPDPLQD C+A+L AT I+++GFPCKP S+V SDDFF +  S
Sbjct: 13  ILFATIFLII---SSCRADPDPLQDFCVANLQATDITVDGFPCKPTSSVVSDDFFFSGLS 69

Query: 70  KDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGT 129
               T ++F   +T  +V  FP +NT G+++ R+DL  GGINP H+HPR TE G + +G 
Sbjct: 70  APGNTNNMFGSNITQANVANFPGLNTLGLSMNRVDLVPGGINPLHSHPRATELGFILQGE 129

Query: 130 VLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGT 189
           VLVG V+T N F+SK +  G+ F+IPR LVHFQ NVG   A  I  F++Q PGV  +  T
Sbjct: 130 VLVGFVSTANAFYSKTVKAGESFVIPRGLVHFQFNVGTGNAVVITAFDSQLPGVVLAPFT 189

Query: 190 LFDTTPPVPNEVLTKSFRVGDDVINTIRA 218
           LF +TP +PN+VLTK+F+V   VIN +++
Sbjct: 190 LFGSTPAIPNDVLTKTFQVDQSVINLLKS 218

Source: Ananas comosus

Species: Ananas comosus

Genus: Ananas

Family: Bromeliaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638668|gb|ACU19639.1| unknown [Glycine max]

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 102/216 (47%), Positives = 134/216 (62%), Gaps = 2/216 (0%)

Query: 7   MSLFGLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFT 66
           M L G L  + + L+L   S ASDPDPLQD+C+ADL + + +NGF CK A+ V + DFF+
Sbjct: 1   MKLTGFLQAVTLALVLATVS-ASDPDPLQDLCVADLASAVKVNGFTCKDAAKVNASDFFS 59

Query: 67  DFSKDP-TTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIV 125
           D    P  T + +   VT  +V   P +NT GV+L RID   GGINPPHTHPR TE   V
Sbjct: 60  DILTKPGATNNTYGSLVTGANVQKIPGLNTLGVSLSRIDYAPGGINPPHTHPRATEVVFV 119

Query: 126 TRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSD 185
             GT+ VG +TT N   SK ++ G++F+ P+ LVHFQ N G E A+ I  FN+Q PG   
Sbjct: 120 LEGTLDVGFITTANVLISKSISKGEIFVFPKGLVHFQKNNGKEQASVIAAFNSQLPGTQS 179

Query: 186 SIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARA 221
              TL   TPPVP+ VLTK+F+VG   +  I++  A
Sbjct: 180 IALTLSAATPPVPDNVLTKAFQVGTKEVEKIKSRLA 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572882|ref|XP_003554594.1| PREDICTED: germin-like protein 5-1-like [Glycine max]

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 131/216 (60%), Gaps = 1/216 (0%)

Query: 7   MSLFGLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFT 66
           M L G L  + +  ++     ASDPD LQD+C+ADL + + +NGF CK A  V + DFF+
Sbjct: 1   MKLTGFLQAVTLTALVLSTFTASDPDSLQDLCVADLASAVKVNGFTCKDAGKVNASDFFS 60

Query: 67  DFSKDP-TTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIV 125
           D    P  T + +   VT  +V   P +NT GV+L RID   GGINPPHTHPR TE   V
Sbjct: 61  DILAKPGATNNTYGSLVTGANVQKIPGLNTLGVSLSRIDYAPGGINPPHTHPRATEVVFV 120

Query: 126 TRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSD 185
             GT+ VG +TT N   SK +  G++F+ P+ LVHFQ N G EPA+ I  FN+Q PG   
Sbjct: 121 LEGTLDVGFITTANVLISKAINKGEIFVFPKGLVHFQKNNGKEPASVIAAFNSQLPGTQS 180

Query: 186 SIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARA 221
              TLF  TPP+P+ VLTK+F+VG   +  I++  A
Sbjct: 181 IALTLFAATPPLPDNVLTKAFQVGTKEVQKIKSRLA 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2011306	220	AT1G18980 [Arabidopsis thalian	0.8	0.872	0.420	8e-37
TAIR|locus:2011291	220	GLP4 "germin-like protein 4" [	0.795	0.868	0.408	1.9e-35
TAIR|locus:2012260	219	GLP5 "germin-like protein 5" [	0.808	0.885	0.411	8.3e-35
TAIR|locus:2827077	219	GL22 "germin-like protein subf	0.795	0.872	0.395	5.8e-34
TAIR|locus:2079582	220	GLP10 "germin-like protein 10"	0.795	0.868	0.388	2.3e-32
TAIR|locus:2074489	219	GLP8 "germin-like protein 8" [	0.783	0.858	0.343	4.5e-27
TAIR|locus:2177147	222	AT5G39110 [Arabidopsis thalian	0.804	0.869	0.341	3.2e-26
TAIR|locus:2177157	221	AT5G39120 [Arabidopsis thalian	0.804	0.873	0.336	2.2e-25
TAIR|locus:2177187	221	AT5G39150 [Arabidopsis thalian	0.804	0.873	0.331	5.9e-25
TAIR|locus:2146759	213	AT5G26700 [Arabidopsis thalian	0.791	0.892	0.307	9.7e-25

TAIR|locus:2011306 AT1G18980 [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 82/195 (42%), Positives = 110/195 (56%)

Query:    25 PSRASDPDPLQDVCIADLNATISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKR-AVT 83
             PS +SD DPLQD C+ DL A+ SINGFPCK  S+V                      AV+
Sbjct:    24 PSLSSDSDPLQDFCVGDLKASPSINGFPCK--SSVSASDFFFSGLGGPLNTSTPNGVAVS 81

Query:    84 FGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFS 143
               +V  FP +NT G+++  ++   GG+NPPH+HPR TEAG+                 FS
Sbjct:    82 PANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFLTTNNTLFS 141

Query:   144 KVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLT 203
             KVL  G++F++PR LVHFQ NVG   A  I  FN+Q PG +    TLF + P +PN VLT
Sbjct:   142 KVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSNPTIPNAVLT 201

Query:   204 KSFRVGDDVINTIRA 218
             K+FR  D  +N +++
Sbjct:   202 KTFRTDDVTVNKLKS 216

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2011291 GLP4 "germin-like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 80/196 (40%), Positives = 103/196 (52%)

Query:    25 PSRASDPDPLQDVCIADLNATISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRAVTF 84
             PS +SD DPLQD C+ DL A+ SINGFPCK A +                       VT 
Sbjct:    24 PSLSSDSDPLQDFCVGDLKASASINGFPCKSAVSASDFFYSGLGGPLDTSN---PNGVTV 80

Query:    85 G--DVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFF 142
                +V  FP +NT G+++  ++L  GG+NPPH HPR TE G                  F
Sbjct:    81 APANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGSVFVGFLSTNNTLF 140

Query:   143 SKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVL 202
             SKVL  G+ F+IPR LVHFQ NVG   A  I  FN+Q PG      TLF + P +PN VL
Sbjct:   141 SKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPSTLFGSKPEIPNAVL 200

Query:   203 TKSFRVGDDVINTIRA 218
             T++FR  D  +  +++
Sbjct:   201 TRAFRTDDTTVQNLKS 216

GO:0005576 "extracellular region" evidence=ISM

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2012260 GLP5 "germin-like protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 81/197 (41%), Positives = 107/197 (54%)

Query:    24 FPSRASDPDPLQDVCIADLNATISINGFPCKPASNVXXXXXXXXXXXX-XXXXXVFKRAV 82
             F S ++DPD LQD+C+ADL + I INGFPCK A+ V                   F   V
Sbjct:    18 FISSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGALV 77

Query:    83 TFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFF 142
             T  +V   P +NT GV+L RID   GG+NPPHTHPR TE                     
Sbjct:    78 TGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTTANKLI 137

Query:   143 SKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIG-TLFDTTPPVPNEV 201
             S+ L  G VF  P+ LVHFQ N G+ PA+ I  FN+Q PG + S+G TLF +TPPVP+ +
Sbjct:   138 SQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPG-TQSLGATLFGSTPPVPDNI 196

Query:   202 LTKSFRVGDDVINTIRA 218
             L ++F+     +  I++
Sbjct:   197 LAQAFQTSPGTVKHIKS 213

GO:0005576 "extracellular region" evidence=ISM

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IMP

GO:2000280 "regulation of root development" evidence=IMP

TAIR|locus:2827077 GL22 "germin-like protein subfamily 2 member 2 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 76/192 (39%), Positives = 101/192 (52%)

Query:    27 RASDPDPLQDVCIADLNATISINGFPCKPASNVXXXXXXXXXXXX-XXXXXVFKRAVTFG 85
             RA DPD LQD+C+AD +    +NGFPCK   N+                      AVT  
Sbjct:    21 RAYDPDALQDLCVADKSHGTKLNGFPCKETLNITESDFFFAGISKPAVINSTMGSAVTGA 80

Query:    86 DVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKV 145
             +V   P +NT  V+L RID   GG+NPPHTHPR TE                    F+K 
Sbjct:    81 NVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVVYVLEGELEVGFITTANKLFTKT 140

Query:   146 LTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKS 205
             +  G+VF+ PR LVHFQ N G  PA+ +  FN+Q PG +    TLF   P +P +VLTK+
Sbjct:   141 IKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFAAEPALPEDVLTKT 200

Query:   206 FRVGDDVINTIR 217
             F+VG  +++ I+
Sbjct:   201 FQVGSKMVDKIK 212

GO:0005576 "extracellular region" evidence=ISM

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IMP

GO:2000280 "regulation of root development" evidence=IMP

TAIR|locus:2079582 GLP10 "germin-like protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 75/193 (38%), Positives = 100/193 (51%)

Query:    28 ASDPDPLQDVCIADLNATISINGFPCKPASNVXXXXXXXXXXXX-XXXXXVFKRAVTFGD 86
             A DPD LQD+C+AD  + I +NGF CKP SN+                      AVT  +
Sbjct:    21 AYDPDTLQDLCVADRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVVNNTVGSAVTGAN 80

Query:    87 VFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVL 146
             V     +NT GV+L RID   GG+NPPHTHPR TE                    F+K +
Sbjct:    81 VEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFITTANKLFAKTV 140

Query:   147 TPGKVFLIPRALVHFQLNVGN-EPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKS 205
               G+VF+ PR L+H+Q N    +PA+ I  FN+Q PG      TLF  TP +P+ VLT +
Sbjct:   141 KKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFTATPAIPDHVLTTT 200

Query:   206 FRVGDDVINTIRA 218
             F++G   I  I++
Sbjct:   201 FQIGTKEIEKIKS 213

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2074489 GLP8 "germin-like protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 66/192 (34%), Positives = 98/192 (51%)

Query:    29 SDPDPLQDVCIADLNATISINGFPCKPASNVX--XXXXXXXXXXXXXXXXVFKRAVTFGD 86
             +D + LQD C+ADL+  + +NG+PCK  + V                       AVT  +
Sbjct:    22 ADTNMLQDFCVADLSNGLKVNGYPCKDPAKVTPEDFYFIGLATAAATANSSMGSAVTGAN 81

Query:    87 VFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVL 146
             V   P +NT GV++ RID   GG+NPPH HPR +EA                    SK +
Sbjct:    82 VEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTTTGKLISKHV 141

Query:   147 TPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIG-TLFDTTPPVPNEVLTKS 205
               G VF+ P+AL+HFQ N    PA+ +  F++Q PG +  +G +LF + PP+P+++L K+
Sbjct:   142 NKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPG-TQVVGPSLFGSNPPIPDDLLAKA 200

Query:   206 FRVGDDVINTIR 217
             F      I  I+
Sbjct:   201 FGAAAPEIQKIK 212

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2177147 AT5G39110 [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 68/199 (34%), Positives = 98/199 (49%)

Query:    26 SRASDPDPLQDVCIA--DLNATISINGFPCK-PASNVXXXXXXXXXXXXXXXXXVFKRAV 82
             + A+DP PLQD C+A  DL   + +NG  CK P                       K  V
Sbjct:    20 AEANDPSPLQDFCVAIGDLKNGVFVNGKFCKDPKQAKAEDFFYSGLNQAGTTNNKVKSNV 79

Query:    83 TFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXX-- 140
             T  +V   P +NT G++L RID    G NPPHTHPR TE  +                  
Sbjct:    80 TTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNN 139

Query:   141 -FFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPN 199
               F+KVL PG VF+ P  ++HFQ+N+G  PA      ++QN GV     T+F +TPP+  
Sbjct:   140 RLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINP 199

Query:   200 EVLTKSFRVGDDVINTIRA 218
             ++L ++F++  +V+  + A
Sbjct:   200 DILAQAFQLDVNVVKDLEA 218

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

TAIR|locus:2177157 AT5G39120 [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 67/199 (33%), Positives = 97/199 (48%)

Query:    26 SRASDPDPLQDVCIA--DLNATISINGFPCK-PASNVXXXXXXXXXXXXXXXXXVFKRAV 82
             ++A DP PLQD C+A  D    + +NG  CK P                       K  V
Sbjct:    19 AKAYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVKSNV 78

Query:    83 TFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXX-- 140
             T  +V   P +NT G++L RID    G NPPHTHPR TE  +                  
Sbjct:    79 TTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNN 138

Query:   141 -FFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPN 199
               F+KVL PG VF+ P  ++HFQ+N+G  PA      ++QN GV     T+F +TPP+  
Sbjct:   139 RLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINP 198

Query:   200 EVLTKSFRVGDDVINTIRA 218
             ++L ++F++  +V+  + A
Sbjct:   199 DILAQAFQLDVNVVKDLEA 217

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

TAIR|locus:2177187 AT5G39150 [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 66/199 (33%), Positives = 97/199 (48%)

Query:    26 SRASDPDPLQDVCIA--DLNATISINGFPCK-PASNVXXXXXXXXXXXXXXXXXVFKRAV 82
             ++A DP PLQD C+A  D    + +NG  CK P                       +  V
Sbjct:    19 AKAYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNV 78

Query:    83 TFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXX-- 140
             T  +V   P +NT G++L RID    G NPPHTHPR TE  +                  
Sbjct:    79 TTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNN 138

Query:   141 -FFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPN 199
               F+KVL PG VF+ P  ++HFQ+N+G  PA      ++QN GV     T+F +TPP+  
Sbjct:   139 RLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINP 198

Query:   200 EVLTKSFRVGDDVINTIRA 218
             ++L ++F++  +V+  + A
Sbjct:   199 DILAQAFQLDVNVVKDLEA 217

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

TAIR|locus:2146759 AT5G26700 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 60/195 (30%), Positives = 96/195 (49%)

Query:    24 FPSRASDPDPLQDVCIADLNATISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRAVT 83
             F + AS  + LQDVC+ADL+  + +NG+ CK ++ +                     +V 
Sbjct:    16 FVAMAS-AEMLQDVCVADLSNAVKVNGYTCKDSTQITPEDFYFKGLANIAATNTSTGSVV 74

Query:    84 FG-DVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFF 142
              G +V   P +NT G+++ RID    G+NPPH HPR +E                     
Sbjct:    75 TGANVEKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEIIFVLEGQLYVGFVTTAGKLI 134

Query:   143 SKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVL 202
             +K L  G VF  P+ L+HFQ N+ N PA+ +  F++Q PG    + +LF     +P+++L
Sbjct:   135 AKNLNKGDVFTFPKGLIHFQKNIANSPASVLAAFDSQLPGTQSLVASLFGA---LPDDIL 191

Query:   203 TKSFRVGDDVINTIR 217
              KSF++    +  I+
Sbjct:   192 AKSFQLKHKQVKKIK 206

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0045735 "nutrient reservoir activity" evidence=IEA

GO:0048046 "apoplast" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LMC9	GLT2_ARATH	No assigned EC number	0.4805	0.8541	0.9318	yes	no
Q851J9	GL34_ORYSJ	No assigned EC number	0.4511	0.8583	0.8995	yes	no
Q851K0	GL35_ORYSJ	No assigned EC number	0.4604	0.8583	0.9074	yes	no
Q851K1	GL36_ORYSJ	No assigned EC number	0.4465	0.8583	0.8995	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
smart00835	146	smart00835, Cupin_1, Cupin	2e-27
pfam00190	139	pfam00190, Cupin_1, Cupin	4e-22
COG1917	131	COG1917, COG1917, Uncharacterized conserved protei	2e-09
pfam07883	70	pfam07883, Cupin_2, Cupin domain	2e-07
TIGR03404	367	TIGR03404, bicupin_oxalic, bicupin, oxalate decarb	5e-04

>gnl|CDD|214845 smart00835, Cupin_1, Cupin

 Score =  102 bits (256), Expect = 2e-27
 Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 2/134 (1%)

Query: 81  AVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN-N 139
            +   D   FPA+N  G++  R++L+ GG+ PPH HPR TE   V RG   VG+V  N N
Sbjct: 13  RLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGN 72

Query: 140 TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPN 199
             +   L  G VF++P+   HFQ+N G+E   F+  FNT +P     +         +P 
Sbjct: 73  KVYDARLREGDVFVVPQGHPHFQVNSGDENLEFV-AFNTNDPNRRFFLAGRNSVLRGLPP 131

Query: 200 EVLTKSFRVGDDVI 213
           EVL  +F V  + +
Sbjct: 132 EVLAAAFGVSAEEV 145

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 146

>gnl|CDD|215780 pfam00190, Cupin_1, Cupin

 Score = 88.1 bits (219), Expect = 4e-22
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 16/138 (11%)

Query: 80  RAVTFGDVFGFPAVNT-QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN 138
             +   +    P +    G A+ R  ++ GG+  PH HP  TE   V +G   VG V   
Sbjct: 15  GRLETANPNNLPGLLGLAGSAVRRDLIEPGGLLLPHYHPNATEILYVLQGRGRVGFVVPG 74

Query: 139 NTF--FSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPP 196
             F  F + L  G VF++P    H+Q N G+     +  F+T NP               
Sbjct: 75  CGFRVFHQKLREGDVFVVPAGFAHWQYNSGDPGLELV-AFDTNNPANQ------------ 121

Query: 197 VPNEVLTKSFRVGDDVIN 214
           +P EVL ++F +  +   
Sbjct: 122 LPREVLARAFFLAGNEAR 139

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 139

>gnl|CDD|224829 COG1917, COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 90  FPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPG 149
            P    + +++  +  + G + P HTHP G +   V  G    G V        K L  G
Sbjct: 35  LPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGE---GTVQLEGE--KKELKAG 89

Query: 150 KVFLIPRALVHFQLNVGNEPATFIPIF 176
            V +IP  +VH    V +EP   + +F
Sbjct: 90  DVIIIPPGVVHGLKAVEDEPMVLLLVF 116

Length = 131

>gnl|CDD|219618 pfam07883, Cupin_2, Cupin domain

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 101 FRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVH 160
             + L  G  +PPH HP G E   V  G    G +T +      VL  G     P  + H
Sbjct: 1   GLVTLPPGESSPPHRHP-GEEFFYVLEGE---GELTVDG--EEVVLKAGDSVYFPAGVPH 54

Query: 161 FQLNVGNEPATFIPIF 176
              N G+EPA  + ++
Sbjct: 55  RFRNTGDEPARLLDVY 70

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). Length = 70

>gnl|CDD|132445 TIGR03404, bicupin_oxalic, bicupin, oxalate decarboxylase family

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 8/137 (5%)

Query: 86  DVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKV 145
           D   FP   T   A+  + ++ G +   H HP   E     +G   + +        +  
Sbjct: 235 DSTNFPVSKTIAAAI--VTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFD 292

Query: 146 LTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSD-SIGTLFDTTPPVPNEVLTK 204
              G V  +PR + H+  N G+E   F+ +F       +D S+      TPP   +++  
Sbjct: 293 YQAGDVGYVPRNMGHYVENTGDETLVFLEVFK--ADRFADVSLNQWLALTPP---QLVAA 347

Query: 205 SFRVGDDVINTIRAARA 221
              + D+VI++++  + 
Sbjct: 348 HLNLDDEVIDSLKKEKQ 364

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins. Length = 367

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.95
PLN00212	493	glutelin; Provisional	99.93
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	99.92
PLN00212	493	glutelin; Provisional	99.91
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.91
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.87
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	99.78
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	99.44
COG1917	131	Uncharacterized conserved protein, contains double	99.36
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	99.34
PRK04190	191	glucose-6-phosphate isomerase; Provisional	99.33
PRK13290	125	ectC L-ectoine synthase; Reviewed	99.31
COG3837	161	Uncharacterized conserved protein, contains double	99.14
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.08
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	99.03
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.03
PRK11171	266	hypothetical protein; Provisional	99.02
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	98.99
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.97
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	98.97
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.91
PRK11171	266	hypothetical protein; Provisional	98.87
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	98.72
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	98.67
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	98.51
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	98.49
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	98.38
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	98.37
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	98.32
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	98.32
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	98.31
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	98.23
COG1791	181	Uncharacterized conserved protein, contains double	98.2
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	98.1
COG4297	163	Uncharacterized protein containing double-stranded	98.09
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	98.06
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	98.01
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	98.0
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	97.97
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	97.91
PRK13501	290	transcriptional activator RhaR; Provisional	97.87
PRK13500	312	transcriptional activator RhaR; Provisional	97.86
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	97.81
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	97.76
KOG2107	179	consensus Uncharacterized conserved protein, conta	97.72
PRK13502	282	transcriptional activator RhaR; Provisional	97.69
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	97.67
PRK13503	278	transcriptional activator RhaS; Provisional	97.65
COG3257	264	GlxB Uncharacterized protein, possibly involved in	97.58
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	97.42
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	97.28
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	97.21
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	97.16
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	97.05
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	96.97
COG3450	116	Predicted enzyme of the cupin superfamily [General	96.92
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	96.79
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	96.64
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	96.58
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	96.16
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	96.0
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	95.36
PF12852	186	Cupin_6: Cupin	94.91
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	94.82
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	94.71
COG3806	216	ChrR Transcriptional activator [Transcription]	94.64
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	94.54
PF07385	225	DUF1498: Protein of unknown function (DUF1498); In	94.42
PF13759	101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	94.37
PLN02658	435	homogentisate 1,2-dioxygenase	94.21
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	94.18
COG1741	276	Pirin-related protein [General function prediction	93.93
PRK12335	287	tellurite resistance protein TehB; Provisional	93.76
PRK09391	230	fixK transcriptional regulator FixK; Provisional	93.61
PF05118	163	Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl	93.47
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	93.08
KOG3706	629	consensus Uncharacterized conserved protein [Funct	93.06
COG5553	191	Predicted metal-dependent enzyme of the double-str	92.91
TIGR02466	201	conserved hypothetical protein. This family consis	92.87
COG3257	264	GlxB Uncharacterized protein, possibly involved in	92.85
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	92.45
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	92.33
PF07847	200	DUF1637: Protein of unknown function (DUF1637); In	92.11
COG3508	427	HmgA Homogentisate 1,2-dioxygenase [Secondary meta	92.01
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	91.92
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	91.91
KOG3995	279	consensus 3-hydroxyanthranilate oxygenase HAAO [Am	91.3
COG3822	225	ABC-type sugar transport system, auxiliary compone	90.06
PRK15131	389	mannose-6-phosphate isomerase; Provisional	89.65
COG2850	383	Uncharacterized conserved protein [Function unknow	89.26
PF14525	172	AraC_binding_2: AraC-binding-like domain	88.62
PRK10579	94	hypothetical protein; Provisional	88.57
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	88.49
PF11142	63	DUF2917: Protein of unknown function (DUF2917); In	88.39
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	87.7
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	87.6
PLN02288	394	mannose-6-phosphate isomerase	86.99
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	85.99
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	85.71
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	85.52
PF06172	139	Cupin_5: Cupin superfamily (DUF985); InterPro: IPR	84.41
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	82.59
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	82.37
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	82.21

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.95  E-value=5.4e-27  Score=216.83  Aligned_cols=163  Identities=17%  Similarity=0.282  Sum_probs=144.3

Q ss_pred             CccCCCCCCCCCCCeeeecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCE
Q 045405           50 GFPCKPASNVTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGT  129 (240)
Q Consensus        50 g~~ck~~~~v~~~df~f~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~  129 (240)
                      ..+-+++....++.|+|.+....+. ...||+++.++..++|+++  ++++++++|+||++.++|||++++|++||++|+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~p~-~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~  276 (367)
T TIGR03404       200 QEAVTGPAGEVPGPFTYHLSEQKPK-QVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQ  276 (367)
T ss_pred             cccCcCCCCCCCccEEEEhhhCCce-ecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEE
Confidence            3444555555567799976665544 5777889999999999998  699999999999999999999999999999999


Q ss_pred             EEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceeccchhhcCCCCCCHHHHHhhcCCC
Q 045405          130 VLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVG  209 (240)
Q Consensus       130 ~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~~~lf~s~~~~p~~vla~af~v~  209 (240)
                      +++++.+++++..+..+++||++++|+|..|+++|.|+++++++++|++..++.+.++++ ++   .+|++||+++|+++
T Consensus       277 ~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~-l~---~~p~~vl~~~~~~~  352 (367)
T TIGR03404       277 ARMTVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQW-LA---LTPPQLVAAHLNLD  352 (367)
T ss_pred             EEEEEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHH-Hh---hCCHHHHHHHhCcC
Confidence            999999887776788999999999999999999999999999999999999999998864 45   59999999999999


Q ss_pred             HHHHHHHHhh
Q 045405          210 DDVINTIRAA  219 (240)
Q Consensus       210 ~~~v~~l~~~  219 (240)
                      ++++++|++.
T Consensus       353 ~~~~~~l~~~  362 (367)
T TIGR03404       353 DEVIDSLKKE  362 (367)
T ss_pred             HHHHHhcccc
Confidence            9999999875

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PLN00212 glutelin; Provisional

Probab=99.93  E-value=3.6e-25  Score=210.04  Aligned_cols=149  Identities=21%  Similarity=0.370  Sum_probs=131.0

Q ss_pred             CCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-eEEEEEECCCC
Q 045405           72 PTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-TFFSKVLTPGK  150 (240)
Q Consensus        72 ~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~~~~~~l~~GD  150 (240)
                      .++.++.+|+++.++..++|+|++++|++.+++|.||++.+||||++|+|++||++|++++++++++| +++..+|++||
T Consensus       322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~Gd  401 (493)
T PLN00212        322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQ  401 (493)
T ss_pred             cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCC
Confidence            45678999999999999999999999999999999999999999999999999999999999999874 78899999999


Q ss_pred             EEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceec--cchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCCCc
Q 045405          151 VFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDS--IGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSS  224 (240)
Q Consensus       151 v~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~--~~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~~~~  224 (240)
                      +++||+|++|.... +++...++++.++.++-...+  ..++|+   ++|.+||+++|+++.+++++|+..+....
T Consensus       402 vfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~---alp~eVla~Af~is~eea~~lk~n~~~e~  473 (493)
T PLN00212        402 LLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFR---ALPVDVIANAYRISREEARRLKNNRGDEL  473 (493)
T ss_pred             EEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHH---hCCHHHHHHHcCCCHHHHHHHHhcccCce
Confidence            99999999999866 567788888776555432222  267999   79999999999999999999999875444

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=99.92  E-value=1.9e-24  Score=175.11  Aligned_cols=134  Identities=30%  Similarity=0.482  Sum_probs=112.5

Q ss_pred             ecCCCCCccCcCCceEEEecccCCCCCCcc-ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-----e
Q 045405           67 DFSKDPTTFDVFKRAVTFGDVFGFPAVNTQ-GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-----T  140 (240)
Q Consensus        67 ~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~-gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-----~  140 (240)
                      ++.++.+..+..+|+++.++..++|.+..+ ++.+.++.++||++.+|||| ++.|+.||++|+++++++.+++     +
T Consensus         2 n~~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~   80 (144)
T PF00190_consen    2 NLREPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFR   80 (144)
T ss_dssp             ETCSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEE
T ss_pred             CCCCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccce
Confidence            455555566778889999999999965544 55666777899999999999 9999999999999999999876     3


Q ss_pred             EEEEE--ECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceeccchhhcCCCCCCHHHHHhhcCCCHHHH
Q 045405          141 FFSKV--LTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVI  213 (240)
Q Consensus       141 ~~~~~--l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~~~lf~s~~~~p~~vla~af~v~~~~v  213 (240)
                      ....+  +++||++++|+|.+||+.|.|+++...+.+|++.+|..+            +|+++++++|+++.+++
T Consensus        81 ~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~  143 (144)
T PF00190_consen   81 DFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEV  143 (144)
T ss_dssp             EEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHH
T ss_pred             eeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcC
Confidence            45566  999999999999999999999888888888887777664            78999999999999875

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>PLN00212 glutelin; Provisional

Probab=99.91  E-value=2.8e-23  Score=197.22  Aligned_cols=155  Identities=15%  Similarity=0.242  Sum_probs=128.7

Q ss_pred             cCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeE-E-----------
Q 045405           75 FDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-F-----------  142 (240)
Q Consensus        75 ~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~-~-----------  142 (240)
                      ....||.+..+ ..+.+.|+|+|+++.|++|+|+|+.+|||| ++++++||++|++.++++.|++.. +           
T Consensus        58 i~se~G~~E~~-~~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~  135 (493)
T PLN00212         58 VRSEAGVTEYF-DEKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEG  135 (493)
T ss_pred             hcccCceeeec-CCCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccc
Confidence            35677744444 477899999999999999999999999999 899999999999999999875311 1           


Q ss_pred             -------------EEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCC--------ceecc--------------
Q 045405          143 -------------SKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPG--------VSDSI--------------  187 (240)
Q Consensus       143 -------------~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg--------~~~~~--------------  187 (240)
                                   .+.+++||++++|+|++||++|.|+++++++++++..++.        .+.++              
T Consensus       136 ~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~  215 (493)
T PLN00212        136 QSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSI  215 (493)
T ss_pred             cccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccc
Confidence                         1589999999999999999999999999999888754431        22222              


Q ss_pred             -----chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCC-CceEEecCCeee
Q 045405          188 -----GTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQ-SSWINILDGRSI  234 (240)
Q Consensus       188 -----~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~~-~~~i~~~~~~~~  234 (240)
                           .++|+   +|++++|++||+++.++++||+..++. ..||++.++.++
T Consensus       216 ~~~~~~nifs---GF~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv~~~l~~  265 (493)
T PLN00212        216 EQHSGQNIFS---GFSTELLSEALGINAQVAKRLQSQNDQRGEIIRVKNGLQL  265 (493)
T ss_pred             cccccCchhh---cCCHHHHHHHHCCCHHHHHHHhccccCCccEEEECCCccc
Confidence                 35999   899999999999999999999988764 558899876553

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.91  E-value=4.8e-23  Score=190.56  Aligned_cols=147  Identities=19%  Similarity=0.250  Sum_probs=126.5

Q ss_pred             CeeeecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEE
Q 045405           63 DFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFF  142 (240)
Q Consensus        63 df~f~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~  142 (240)
                      -|.|.+++..   ...|++++.++..++|+++  ++++.++++.||++.++|||. +.|++||++|++++++++++|+.+
T Consensus        37 ~~~~~~~~~~---~~~gG~~~~~~~~~lP~l~--~ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~~g~~~  110 (367)
T TIGR03404        37 KWSFSDSHNR---LENGGWAREVTVRDLPIST--AIAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDENGRNY  110 (367)
T ss_pred             eeeeccccCc---cccCceEEEeChhhccCcc--cccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcCCCcEE
Confidence            3566666543   2468899999999999999  489999999999999999994 689999999999999999888988


Q ss_pred             EEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCC---CCceeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 045405          143 SKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQN---PGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAA  219 (240)
Q Consensus       143 ~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~---Pg~~~~~~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~  219 (240)
                      ...|++||+++||+|.+|+++|.+ ++++++.+|+...   +..+.+.+ +|+   .+|++||+++|+++++++++|++.
T Consensus       111 ~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~-~l~---~~p~~Vla~~f~l~~~~~~~l~~~  185 (367)
T TIGR03404       111 IDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTD-WLA---HTPKDVLAKNFGVPESAFDNLPLK  185 (367)
T ss_pred             EeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHH-HHH---hCCHHHHHHHhCCCHHHHHhcccc
Confidence            789999999999999999999985 5678888887754   45666765 567   599999999999999999999876


Q ss_pred             c
Q 045405          220 R  220 (240)
Q Consensus       220 ~  220 (240)
                      .
T Consensus       186 ~  186 (367)
T TIGR03404       186 E  186 (367)
T ss_pred             C
Confidence            4

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>smart00835 Cupin_1 Cupin

Probab=99.87  E-value=1.3e-20  Score=152.97  Aligned_cols=135  Identities=36%  Similarity=0.633  Sum_probs=117.8

Q ss_pred             cCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccC-CeEEEEEECCCCEEE
Q 045405           75 FDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN-NTFFSKVLTPGKVFL  153 (240)
Q Consensus        75 ~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~-g~~~~~~l~~GDv~v  153 (240)
                      .+..||+++.++..++|.+++.++.+.+++++||+..++|||+++.|++||++|++++.+.++. ++.....+++||+++
T Consensus         7 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~   86 (146)
T smart00835        7 FSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV   86 (146)
T ss_pred             ccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence            4677888999999999999999999999999999999999998889999999999999987653 355678999999999


Q ss_pred             eCCCCeEEEEecCCCCEEEEEEEeCCCCCce---eccchhhcCCCCCCHHHHHhhcCCCHHHH
Q 045405          154 IPRALVHFQLNVGNEPATFIPIFNTQNPGVS---DSIGTLFDTTPPVPNEVLTKSFRVGDDVI  213 (240)
Q Consensus       154 ~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~---~~~~~lf~s~~~~p~~vla~af~v~~~~v  213 (240)
                      +|+|..|++.|.+++++++++ +.+++|...   ....++|.   ++++++++++|+++++++
T Consensus        87 ip~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  145 (146)
T smart00835       87 VPQGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLR---GLPPEVLAAAFGVSAEEV  145 (146)
T ss_pred             ECCCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhh---cCCHHHHHHHhCcChHHc
Confidence            999999999999999999885 666666542   22247888   899999999999999875

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=99.78  E-value=2e-18  Score=146.70  Aligned_cols=151  Identities=19%  Similarity=0.249  Sum_probs=128.2

Q ss_pred             CCCCeeeecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCe--EEEEeeCEEEEEEEcc
Q 045405           60 TSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTE--AGIVTRGTVLVGLVTT  137 (240)
Q Consensus        60 ~~~df~f~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~E--i~yVl~G~~~v~~v~~  137 (240)
                      ..+||+|.+......  ..|+.+.......+|+.     .-..+.+.||++...||||+++|  |.||++|++++.+.++
T Consensus        49 ~~~~~~yel~~~~~~--~~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~  121 (209)
T COG2140          49 KEDDFVYELLESEPG--ERGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKP  121 (209)
T ss_pred             CCCceEEEeeccccc--ccCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcC
Confidence            468899955443222  23888999888888887     45678999999999999999999  9999999999999999


Q ss_pred             CCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 045405          138 NNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIR  217 (240)
Q Consensus       138 ~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~~~lf~s~~~~p~~vla~af~v~~~~v~~l~  217 (240)
                      +|+..+..+++||+++||++..|+..|+|++|++++.++....+....+..+++    +++..+++..|+.+.+..+.++
T Consensus       122 ~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~----~~~~~~~~~~~~~~~~~~D~p~  197 (209)
T COG2140         122 EGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLG----GMPPVLVENGLNKNPKYVDVPR  197 (209)
T ss_pred             CCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhc----cCCceeeccccccCcccccCcc
Confidence            999889999999999999999999999999999999999887777777665555    4888899999998888888776


Q ss_pred             hhcC
Q 045405          218 AARA  221 (240)
Q Consensus       218 ~~~~  221 (240)
                      .++.
T Consensus       198 ~~~~  201 (209)
T COG2140         198 IKFA  201 (209)
T ss_pred             cccc
Confidence            6554

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=99.44  E-value=4.5e-13  Score=94.63  Aligned_cols=70  Identities=33%  Similarity=0.550  Sum_probs=63.4

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405          102 RIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus       102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      +++++||+..++|+|+...|++||++|++++.+   +|+  ...+++||.+++|+|..|...|.++++++++.++
T Consensus         2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~   71 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY   71 (71)
T ss_dssp             EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred             EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence            578999999999999886699999999999984   355  7899999999999999999999999999998775

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.36  E-value=8.1e-12  Score=99.29  Aligned_cols=85  Identities=28%  Similarity=0.455  Sum_probs=72.1

Q ss_pred             CCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCC
Q 045405           89 GFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNE  168 (240)
Q Consensus        89 ~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~  168 (240)
                      -.+...+..+.+.++.++||+..+.|+||...+.+||++|++++++.   ++  .+.+++||++++|+|..|+..|.++.
T Consensus        34 ~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~---g~--~~~l~~Gd~i~ip~g~~H~~~a~~~~  108 (131)
T COG1917          34 VLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE---GE--KKELKAGDVIIIPPGVVHGLKAVEDE  108 (131)
T ss_pred             eccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec---CC--ceEecCCCEEEECCCCeeeeccCCCC
Confidence            34444455688999999999999999998568999999999999984   44  68999999999999999999999988


Q ss_pred             CEEEEEEEeC
Q 045405          169 PATFIPIFNT  178 (240)
Q Consensus       169 ~a~~i~~~~s  178 (240)
                      +...++++..
T Consensus       109 ~~~~l~v~~~  118 (131)
T COG1917         109 PMVLLLVFPL  118 (131)
T ss_pred             ceeEEEEeee
Confidence            7666666654

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.34  E-value=1.9e-11  Score=97.30  Aligned_cols=82  Identities=23%  Similarity=0.236  Sum_probs=72.5

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      ...++.++.++||+-..+|.|.+.+|++||++|++.+.+.   ++  ...+++||++++|+|..|...|.|..++.++.+
T Consensus        34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~---~~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei  108 (127)
T COG0662          34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG---GE--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV  108 (127)
T ss_pred             CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence            3678999999999998888888889999999999999984   55  789999999999999999999999999999987


Q ss_pred             EeCCCCC
Q 045405          176 FNTQNPG  182 (240)
Q Consensus       176 ~~s~~Pg  182 (240)
                      -.....+
T Consensus       109 ~~p~~~~  115 (127)
T COG0662         109 QSPPYLG  115 (127)
T ss_pred             ecCCcCC
Confidence            7654443

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=99.33  E-value=2.9e-11  Score=102.75  Aligned_cols=88  Identities=22%  Similarity=0.316  Sum_probs=75.7

Q ss_pred             CCCCccceEEEEEEEcCCcc------cCCccCCCC--CeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEE
Q 045405           91 PAVNTQGVALFRIDLDVGGI------NPPHTHPRG--TEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQ  162 (240)
Q Consensus        91 P~l~~~gls~~~v~l~pGg~------~~pH~Hp~a--~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~  162 (240)
                      |.++..++.+....+.||..      .+.|+|+..  .|+.||++|++.+.+.+.+|......+++||++++|+|..|.+
T Consensus        61 ~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~  140 (191)
T PRK04190         61 PEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRS  140 (191)
T ss_pred             CCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEe
Confidence            34455579999999999996      567999754  5999999999999987776655578999999999999999999


Q ss_pred             EecCCCCEEEEEEEeC
Q 045405          163 LNVGNEPATFIPIFNT  178 (240)
Q Consensus       163 ~N~G~~~a~~i~~~~s  178 (240)
                      .|+|++++++++++..
T Consensus       141 iN~G~epl~fl~v~p~  156 (191)
T PRK04190        141 VNTGDEPLVFLACYPA  156 (191)
T ss_pred             EECCCCCEEEEEEEcC
Confidence            9999999999988754

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=99.31  E-value=3.5e-11  Score=95.81  Aligned_cols=81  Identities=19%  Similarity=0.260  Sum_probs=69.6

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEE-EEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVG-LVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~-~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      .++++.+++++||+..+.|+|.. .|++||++|++++. +.  +|+  ++.|++||++++|++..|.+.|.  +++++++
T Consensus        33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~--~g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~  105 (125)
T PRK13290         33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLA--TGE--VHPIRPGTMYALDKHDRHYLRAG--EDMRLVC  105 (125)
T ss_pred             CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcC--CCE--EEEeCCCeEEEECCCCcEEEEcC--CCEEEEE
Confidence            36789999999999999999965 69999999999998 42  255  68999999999999999999997  8999999


Q ss_pred             EEeCCCCCc
Q 045405          175 IFNTQNPGV  183 (240)
Q Consensus       175 ~~~s~~Pg~  183 (240)
                      +++..-+|.
T Consensus       106 v~tP~~~~~  114 (125)
T PRK13290        106 VFNPPLTGR  114 (125)
T ss_pred             EECCCCCCc
Confidence            987555544

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.14  E-value=2.9e-10  Score=92.70  Aligned_cols=89  Identities=13%  Similarity=0.113  Sum_probs=72.4

Q ss_pred             CCCCCccceEEEEEEEcCCcc-cCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCC--CeEEEEecC
Q 045405           90 FPAVNTQGVALFRIDLDVGGI-NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRA--LVHFQLNVG  166 (240)
Q Consensus        90 ~P~l~~~gls~~~v~l~pGg~-~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G--~~H~~~N~G  166 (240)
                      +-+|.  .+.+....++||+. ...|||...+|++|||+|++.+.+.   +.  .+.|++||++-||+|  ..|.+.|.|
T Consensus        36 ~~Gl~--~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d---~~--e~~lrpGD~~gFpAG~~~aHhliN~s  108 (161)
T COG3837          36 ALGLK--RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRED---GG--ETRLRPGDSAGFPAGVGNAHHLINRS  108 (161)
T ss_pred             hcChh--hcccceEEeCCCCccccccccccCceEEEEEcCceEEEEC---Ce--eEEecCCceeeccCCCcceeEEeecC
Confidence            34455  46677788999996 7889999999999999999998873   44  679999999999999  899999999


Q ss_pred             CCCEEEEEEEeCCCCCcee
Q 045405          167 NEPATFIPIFNTQNPGVSD  185 (240)
Q Consensus       167 ~~~a~~i~~~~s~~Pg~~~  185 (240)
                      +..++.+++=+...-....
T Consensus       109 ~~~~~yL~vG~r~~~d~i~  127 (161)
T COG3837         109 DVILRYLEVGTREPDDIIT  127 (161)
T ss_pred             CceEEEEEeccccccceee
Confidence            9999998876543333333

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.08  E-value=1.2e-09  Score=104.38  Aligned_cols=78  Identities=24%  Similarity=0.278  Sum_probs=70.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ++.+.+++++||+..++|+|+...|.+||++|++++.+.   |+  ++.|++||.+++|+|..|.+.|.|+++++++++.
T Consensus       375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~d---g~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~  449 (468)
T TIGR01479       375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIG---DE--TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ  449 (468)
T ss_pred             CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence            678899999999988889998889999999999999873   55  6899999999999999999999999999999987


Q ss_pred             eCC
Q 045405          177 NTQ  179 (240)
Q Consensus       177 ~s~  179 (240)
                      ...
T Consensus       450 ~~~  452 (468)
T TIGR01479       450 SGS  452 (468)
T ss_pred             cCC
Confidence            633

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=99.03  E-value=3.8e-09  Score=88.89  Aligned_cols=75  Identities=17%  Similarity=0.231  Sum_probs=64.2

Q ss_pred             ceEEEEEEEcCCccc-CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           97 GVALFRIDLDVGGIN-PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        97 gls~~~v~l~pGg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      .+.+.+..++||+.. +.|+|+. .|++||++|++.+.+.   ++  .+.|++||.+++|.+.+|.+.|.|+++++++.+
T Consensus       106 ~~~~~~~~~~pg~~~~~~~~h~~-~E~~~Vl~G~~~~~~~---~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~  179 (185)
T PRK09943        106 TLAMIFETYQPGTTTGERIKHQG-EEIGTVLEGEIVLTIN---GQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRIISA  179 (185)
T ss_pred             eeEEEEEEccCCCCcccccccCC-cEEEEEEEeEEEEEEC---CE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEE
Confidence            466778899999964 4677754 9999999999999873   55  689999999999999999999999999998887


Q ss_pred             Ee
Q 045405          176 FN  177 (240)
Q Consensus       176 ~~  177 (240)
                      ..
T Consensus       180 ~~  181 (185)
T PRK09943        180 HT  181 (185)
T ss_pred             eC
Confidence            54

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.03  E-value=2.4e-09  Score=102.59  Aligned_cols=78  Identities=23%  Similarity=0.251  Sum_probs=69.6

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      .++.+.+++++||+....|+|....|.+||++|++++.+.   |+  ++.|++||.+++|+|.+|.+.|.|++++++|++
T Consensus       383 ~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~id---g~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V  457 (478)
T PRK15460        383 DRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTID---GD--IKLLGENESIYIPLGATHCLENPGKIPLDLIEV  457 (478)
T ss_pred             CcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence            3678899999999987778877778999999999999984   55  789999999999999999999999999999988


Q ss_pred             EeC
Q 045405          176 FNT  178 (240)
Q Consensus       176 ~~s  178 (240)
                      ...
T Consensus       458 ~~g  460 (478)
T PRK15460        458 RSG  460 (478)
T ss_pred             EcC
Confidence            653

>PRK11171 hypothetical protein; Provisional

Probab=99.02  E-value=1e-08  Score=91.36  Aligned_cols=78  Identities=18%  Similarity=0.205  Sum_probs=68.1

Q ss_pred             ccceEEEEEEEcCCcccCCccCC-CCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           95 TQGVALFRIDLDVGGINPPHTHP-RGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        95 ~~gls~~~v~l~pGg~~~pH~Hp-~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      ..++.+.+++++||+....|+|. ...|++||++|++++.+.   ++  ++.|++||.+++|++..|.+.|.|+++++++
T Consensus        58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~---g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l  132 (266)
T PRK11171         58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLE---GK--THALSEGGYAYLPPGSDWTLRNAGAEDARFH  132 (266)
T ss_pred             CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEEC---CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence            34689999999999987777765 558999999999999873   55  7899999999999999999999999999998


Q ss_pred             EEEe
Q 045405          174 PIFN  177 (240)
Q Consensus       174 ~~~~  177 (240)
                      .+..
T Consensus       133 ~v~~  136 (266)
T PRK11171        133 WIRK  136 (266)
T ss_pred             EEEc
Confidence            8764

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=98.99  E-value=5.1e-09  Score=85.95  Aligned_cols=76  Identities=28%  Similarity=0.313  Sum_probs=69.1

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      +..+-++.+.||.....|.|....|.++|++|++.+.+.   ++  ...+++||.+++|+|..|.+.|.|+.+++++.+-
T Consensus        62 ~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~---~~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq  136 (151)
T PF01050_consen   62 GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLD---DE--EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQ  136 (151)
T ss_pred             CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEEC---CE--EEEEcCCCEEEECCCCEEEEECCCCcCcEEEEEe
Confidence            577899999999999999998889999999999999973   55  6799999999999999999999999999998765


Q ss_pred             e
Q 045405          177 N  177 (240)
Q Consensus       177 ~  177 (240)
                      .
T Consensus       137 ~  137 (151)
T PF01050_consen  137 T  137 (151)
T ss_pred             c
Confidence            3

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.97  E-value=4.9e-09  Score=93.13  Aligned_cols=72  Identities=14%  Similarity=0.152  Sum_probs=63.3

Q ss_pred             ceEEEEEEEcCCcccCC-ccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405           97 GVALFRIDLDVGGINPP-HTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus        97 gls~~~v~l~pGg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      ++.+.+++++||+..+. |.| ..+|.+||++|++.+.+   +|+  +..+++||++++|++.+|+++|.|++++++|.
T Consensus       178 ~~~~~~~~~~PG~~~~~~~~H-~~eh~~yiL~G~G~~~~---~g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~  250 (260)
T TIGR03214       178 DMNVHILSFEPGASHPYIETH-VMEHGLYVLEGKGVYNL---DNN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLL  250 (260)
T ss_pred             CcEEEEEEECCCcccCCcccc-cceeEEEEEeceEEEEE---CCE--EEEecCCCEEEECCCCCEEEEecCCCcEEEEE
Confidence            57788899999999985 556 45789999999999876   466  78999999999999999999999999998874

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.97  E-value=4.5e-09  Score=82.10  Aligned_cols=83  Identities=23%  Similarity=0.331  Sum_probs=73.1

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeE-EEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      ++.+-.++++||+-.-.|-|...+..+||++|+...++.   +++ +..+.++||.|++|+|++|.-.|.+++++..+.+
T Consensus        45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G---~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIa  121 (142)
T COG4101          45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYG---NRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIA  121 (142)
T ss_pred             eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeec---cceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEE
Confidence            788899999999999999999888899999999999884   343 4678899999999999999999999999998887


Q ss_pred             EeCCCCC
Q 045405          176 FNTQNPG  182 (240)
Q Consensus       176 ~~s~~Pg  182 (240)
                      -+..+|.
T Consensus       122 RsDp~~~  128 (142)
T COG4101         122 RSDPNPQ  128 (142)
T ss_pred             ccCCCCC
Confidence            7766654

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.91  E-value=2.4e-08  Score=88.76  Aligned_cols=76  Identities=18%  Similarity=0.125  Sum_probs=66.0

Q ss_pred             ceEEEEEEEcCCccc-CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           97 GVALFRIDLDVGGIN-PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        97 gls~~~v~l~pGg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      .+.+.+++++||+-. .+|+|+...|++||++|++++.+.   ++  ++.|++||.+++|+|..|.+.|.++++++++.+
T Consensus        57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~---g~--~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v  131 (260)
T TIGR03214        57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAE---GE--THELREGGYAYLPPGSKWTLANAQAEDARFFLY  131 (260)
T ss_pred             cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEEC---CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            588999999998754 466677778999999999999863   55  679999999999999999999999999999876


Q ss_pred             Ee
Q 045405          176 FN  177 (240)
Q Consensus       176 ~~  177 (240)
                      -.
T Consensus       132 ~k  133 (260)
T TIGR03214       132 KK  133 (260)
T ss_pred             Ee
Confidence            64

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PRK11171 hypothetical protein; Provisional

Probab=98.87  E-value=2e-08  Score=89.52  Aligned_cols=75  Identities=16%  Similarity=0.127  Sum_probs=65.4

Q ss_pred             ceEEEEEEEcCCcccCCc-cCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPH-THPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH-~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      .+.+.+++|+||+..+.| +| ...|.+||++|++++.+   +++  ++.|++||++.+|.+.+|++.|.|+++++++..
T Consensus       183 ~~~~~~~~l~PG~~~~~~~~~-~~ee~i~Vl~G~~~~~~---~~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~  256 (266)
T PRK11171        183 DMHVNIVTFEPGASIPFVETH-VMEHGLYVLEGKGVYRL---NND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLY  256 (266)
T ss_pred             CcEEEEEEECCCCEEccCcCC-CceEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEE
Confidence            368899999999998884 56 56899999999999987   356  789999999999999999999999999998864


Q ss_pred             Ee
Q 045405          176 FN  177 (240)
Q Consensus       176 ~~  177 (240)
                      -+
T Consensus       257 k~  258 (266)
T PRK11171        257 KD  258 (266)
T ss_pred             cc
Confidence            43

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=98.72  E-value=1.9e-07  Score=78.80  Aligned_cols=85  Identities=24%  Similarity=0.311  Sum_probs=57.9

Q ss_pred             CccceEEEEEEEcCCcc------cCCccCCC------CCeEEEEeeCEEEEEEEccCC----eEEEEEECCCCEEEeCCC
Q 045405           94 NTQGVALFRIDLDVGGI------NPPHTHPR------GTEAGIVTRGTVLVGLVTTNN----TFFSKVLTPGKVFLIPRA  157 (240)
Q Consensus        94 ~~~gls~~~v~l~pGg~------~~pH~Hp~------a~Ei~yVl~G~~~v~~v~~~g----~~~~~~l~~GDv~v~P~G  157 (240)
                      ...++......+.||-+      ..=|+|+.      ..|+.+|++|++.+.+-+.++    +.+...+++||+++||++
T Consensus        46 ~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~  125 (182)
T PF06560_consen   46 QKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPG  125 (182)
T ss_dssp             ----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT
T ss_pred             eeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCC
Confidence            33468888888999864      24599988      899999999999999988877    667789999999999999


Q ss_pred             CeEEEEecCCCCEEEEEEEeC
Q 045405          158 LVHFQLNVGNEPATFIPIFNT  178 (240)
Q Consensus       158 ~~H~~~N~G~~~a~~i~~~~s  178 (240)
                      ..|...|+|++++++.....+
T Consensus       126 yaH~tIN~g~~~L~~~~~~~~  146 (182)
T PF06560_consen  126 YAHRTINTGDEPLVFAAWVPR  146 (182)
T ss_dssp             -EEEEEE-SSS-EEEEEEEET
T ss_pred             ceEEEEECCCCcEEEEEEEec
Confidence            999999999999998876653

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=98.67  E-value=3.1e-07  Score=74.53  Aligned_cols=91  Identities=20%  Similarity=0.260  Sum_probs=56.7

Q ss_pred             CCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccC----CeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405           90 FPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN----NTFFSKVLTPGKVFLIPRALVHFQLNV  165 (240)
Q Consensus        90 ~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~----g~~~~~~l~~GDv~v~P~G~~H~~~N~  165 (240)
                      .-+++  .+.+.+-++.||...|+|-| ..+|+++|++|+++..+....    |+..+..+-+++.+.||.+..|...|+
T Consensus        38 ~hGmk--evEVwlQTfAPG~~TPiHRH-sCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT  114 (167)
T PF02041_consen   38 LHGMK--EVEVWLQTFAPGSATPIHRH-SCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNT  114 (167)
T ss_dssp             HH--S--SEEEEEEEE-TT-B--EEEE-SS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE--
T ss_pred             hcCce--eeeEEeeeecCCCCCCCccc-cccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecC
Confidence            34555  57899999999999999999 569999999999999987654    566678999999999999999999999


Q ss_pred             CC-CCEEEEEEEeCCCCCce
Q 045405          166 GN-EPATFIPIFNTQNPGVS  184 (240)
Q Consensus       166 G~-~~a~~i~~~~s~~Pg~~  184 (240)
                      ++ +++.++++++ .-|-..
T Consensus       115 ~e~eDlqvlViiS-rpPvkv  133 (167)
T PF02041_consen  115 NEHEDLQVLVIIS-RPPVKV  133 (167)
T ss_dssp             -SSS-EEEEEEEE-SSS--E
T ss_pred             CCCcceEEEEEec-CCCeEE
Confidence            94 7888887664 444333

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=98.51  E-value=8.4e-07  Score=73.22  Aligned_cols=60  Identities=17%  Similarity=0.236  Sum_probs=49.4

Q ss_pred             cCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405          106 DVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus       106 ~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~  167 (240)
                      .||.-...|.|+ .+|++|+++|++.+.+.+. |+.....|++||++++|+|+.|.....++
T Consensus        36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~   95 (159)
T TIGR03037        36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAG   95 (159)
T ss_pred             CCCCCcccccCC-CceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence            455556678886 6999999999999998765 55457899999999999999999887543

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=98.49  E-value=7.5e-07  Score=74.60  Aligned_cols=66  Identities=17%  Similarity=0.175  Sum_probs=53.5

Q ss_pred             cCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405          106 DVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus       106 ~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      .||.-...|+|+ .+|++|+++|++++.+.+. |+.....|++||++++|+|+.|..+..  +..+.+.+
T Consensus        42 Gpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi  107 (177)
T PRK13264         42 GPNARTDFHYDP-GEEFFYQLEGDMYLKVQED-GKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI  107 (177)
T ss_pred             cCCcccccccCC-CceEEEEECCeEEEEEEcC-CceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence            577777889996 5999999999999999874 554578999999999999999998763  33444433

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=98.38  E-value=2.5e-06  Score=65.77  Aligned_cols=64  Identities=30%  Similarity=0.336  Sum_probs=46.0

Q ss_pred             CCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405          107 VGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus       107 pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ++-..++|+|+ .-|+.||++|++.+.+   +++  .+.+++||++++|+|.+|.....++++...+.+.
T Consensus        12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~---~~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~   75 (136)
T PF02311_consen   12 PNFEFPPHWHD-FYEIIYVLSGEGTLHI---DGQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY   75 (136)
T ss_dssp             TT-SEEEETT--SEEEEEEEEE-EEEEE---TTE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred             CCCccCCEECC-CEEEEEEeCCEEEEEE---CCE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence            44457899996 5999999999999977   356  6899999999999999999988876676665543

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=98.37  E-value=3.3e-06  Score=69.81  Aligned_cols=67  Identities=15%  Similarity=0.226  Sum_probs=49.8

Q ss_pred             ccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEe
Q 045405          110 INPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFN  177 (240)
Q Consensus       110 ~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~  177 (240)
                      +...|.|.+ .|+-|+++|++.+.+.+.+++.....+++||++++|+|..||+.-..+....++=+|.
T Consensus        84 f~~EH~H~d-eEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~  150 (157)
T PF03079_consen   84 FFEEHTHED-EEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK  150 (157)
T ss_dssp             HCS-EEESS--EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES
T ss_pred             hheeEecCh-heEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec
Confidence            457899965 9999999999999999887776667999999999999999999754445566665553

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=98.32  E-value=1.9e-06  Score=74.65  Aligned_cols=73  Identities=18%  Similarity=0.249  Sum_probs=62.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      +..+..++++||+.+|.|.|. ..|+++|++|+..    ++     ...+.+||++..|.|..|...+.++++++++++.
T Consensus       126 ~~~v~Ll~i~pG~~~p~H~H~-G~E~tlVLeG~f~----de-----~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~  195 (215)
T TIGR02451       126 NARVRLLYIEAGQSIPQHTHK-GFELTLVLHGAFS----DE-----TGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVL  195 (215)
T ss_pred             CcEEEEEEECCCCccCCCcCC-CcEEEEEEEEEEE----cC-----CCccCCCeEEECCCCCCcCcccCCCCCeEEEEEe
Confidence            356789999999999999995 5899999999953    33     2367999999999999999999988899999988


Q ss_pred             eCC
Q 045405          177 NTQ  179 (240)
Q Consensus       177 ~s~  179 (240)
                      +.+
T Consensus       196 dap  198 (215)
T TIGR02451       196 DAP  198 (215)
T ss_pred             cCC
Confidence            754

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=98.32  E-value=4.2e-06  Score=62.31  Aligned_cols=71  Identities=34%  Similarity=0.395  Sum_probs=53.7

Q ss_pred             ceEEEEEEEcCCcccCC-ccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           97 GVALFRIDLDVGGINPP-HTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        97 gls~~~v~l~pGg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      .++...++|+||+.-++ +.. +..-++||++|.+++.+.   +.  +..+.+||++.+|+|-.-.+.|.++++|+++
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~-~~~~vF~V~~G~v~Vti~---~~--~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf   82 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSR-DNTMVFYVIKGKVEVTIH---ET--SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLF   82 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE---SEEEEEEEEESEEEEEET---TE--EEEEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred             CceeEEEEeCCCCccCCcccC-CcEEEEEEEeCEEEEEEc---Cc--EEEEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence            46788999999998665 555 568888999999999984   34  6789999999999999999999999999876

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=98.31  E-value=1.1e-06  Score=65.65  Aligned_cols=66  Identities=21%  Similarity=0.304  Sum_probs=51.7

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      |..+..++++||+..|.|.|+. .|.+|||+|++..    .++     ++.+||.+..|.|..|....  ++.+.++.
T Consensus        23 g~~~~L~r~~pG~~~p~H~H~g-~ee~~VLeG~~~d----~~~-----~~~~G~~~~~p~g~~h~~~s--~~gc~~~v   88 (91)
T PF12973_consen   23 GERVSLLRLEPGASLPRHRHPG-GEEILVLEGELSD----GDG-----RYGAGDWLRLPPGSSHTPRS--DEGCLILV   88 (91)
T ss_dssp             TEEEEEEEE-TTEEEEEEEESS--EEEEEEECEEEE----TTC-----EEETTEEEEE-TTEEEEEEE--SSCEEEEE
T ss_pred             cCEEEEEEECCCCCcCccCCCC-cEEEEEEEEEEEE----CCc-----cCCCCeEEEeCCCCccccCc--CCCEEEEE
Confidence            5688899999999999999965 7888999999873    222     45999999999999999884  45666653

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=98.23  E-value=1.8e-05  Score=68.90  Aligned_cols=70  Identities=14%  Similarity=0.111  Sum_probs=51.0

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      .|+.....+.. ..  .+||-+..|+.||++|++++.+   +|+  ++.+++||++++|+|..|.+...+  .++++.+.
T Consensus       156 ~m~aGf~~~~~-~s--f~wtl~~dEi~YVLEGe~~l~I---dG~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRflyV~  225 (233)
T PRK15457        156 SMAAGFMQWEN-AF--FPWTLNYDEIDMVLEGELHVRH---EGE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLYVA  225 (233)
T ss_pred             ceeeEEEEEec-Cc--cceeccceEEEEEEEeEEEEEE---CCE--EEEeCCCcEEEECCCCeEEecCCC--CeeEEEEE
Confidence            35555555554 22  3466678999999999999998   366  789999999999999995554443  55555444

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.20  E-value=1.3e-05  Score=66.55  Aligned_cols=73  Identities=12%  Similarity=0.231  Sum_probs=60.0

Q ss_pred             cCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCcee
Q 045405          111 NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSD  185 (240)
Q Consensus       111 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~  185 (240)
                      ..-|.|. .+|+-|++.|++...+..++|+.+...+.+||.+.+|+|.-||+.-..+...+++=.|+ ..+|.+-
T Consensus        88 ~~EH~H~-d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gWVa  160 (181)
T COG1791          88 LQEHLHT-DDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGWVA  160 (181)
T ss_pred             HHHhccC-CceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCcee
Confidence            3569995 59999999999999999999999999999999999999999999765445555555553 5667654

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=98.10  E-value=1.5e-05  Score=71.95  Aligned_cols=60  Identities=20%  Similarity=0.107  Sum_probs=49.4

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405          102 RIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus       102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~  167 (240)
                      .-.-.|..+.++|||. .-|+.|+++|++.+.+   +|+  ...+++||+++++.|.+|.....++
T Consensus        30 ~~~~~~~~m~~~HwH~-e~Ei~yv~~G~~~~~i---~g~--~~~l~~Gd~ili~s~~~H~~~~~~~   89 (302)
T PRK10371         30 IEFRPPHIMPTSHWHG-QVEVNVPFDGDVEYLI---NNE--KVQINQGHITLFWACTPHQLTDPGN   89 (302)
T ss_pred             EEeeCCCCCCCCCccc-cEEEEEecCCcEEEEE---CCE--EEEEcCCcEEEEecCCcccccccCC
Confidence            3445667788999995 5999999999998776   466  6799999999999999998765443

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=98.09  E-value=1.1e-05  Score=64.68  Aligned_cols=66  Identities=23%  Similarity=0.325  Sum_probs=53.5

Q ss_pred             Cccc-CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405          108 GGIN-PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus       108 Gg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      |++. --|||.++.|++.|++|+..+.+..++|+  +..+.+||++++|+|+-|.-.. ...+..++..+
T Consensus        52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliPAGvGH~rl~-sS~DF~VvGaY  118 (163)
T COG4297          52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIPAGVGHCRLH-SSADFQVVGAY  118 (163)
T ss_pred             ccccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEecCccccccc-CCCCeEEEccc
Confidence            4443 35999999999999999999999988888  6789999999999999997543 44556655544

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=98.06  E-value=2.4e-05  Score=71.95  Aligned_cols=77  Identities=18%  Similarity=0.278  Sum_probs=65.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      .|....-.|.||...++|-|. +..+.||++|++....+  +|+  ....++||+|+.|.+..|...|.|++++.++.++
T Consensus        80 tl~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V--~g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~l  154 (335)
T TIGR02272        80 SLYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAV--DGE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGL  154 (335)
T ss_pred             hHHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEE--CCE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEecC
Confidence            456667789999999999994 68999999999965666  366  6789999999999999999999999998887666


Q ss_pred             eC
Q 045405          177 NT  178 (240)
Q Consensus       177 ~s  178 (240)
                      +.
T Consensus       155 D~  156 (335)
T TIGR02272       155 DI  156 (335)
T ss_pred             CH
Confidence            53

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=98.01  E-value=8.1e-05  Score=58.91  Aligned_cols=84  Identities=15%  Similarity=0.215  Sum_probs=72.1

Q ss_pred             CccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           94 NTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        94 ~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      .+.|+|+-...+.+|.-...||- +.-|-+|+++|++++...+ +|+  .+.+++|.+.+..+--.|+.....  ++.++
T Consensus        31 DgmGFS~h~T~i~aGtet~~~Yk-nHlEAvyci~G~Gev~~~~-~G~--~~~i~pGt~YaLd~hD~H~lra~~--dm~~v  104 (126)
T PF06339_consen   31 DGMGFSFHETTIYAGTETHIHYK-NHLEAVYCIEGEGEVEDLD-TGE--VHPIKPGTMYALDKHDRHYLRAKT--DMRLV  104 (126)
T ss_pred             CCCCEEEEEEEEeCCCeeEEEec-CceEEEEEEeceEEEEEcc-CCc--EEEcCCCeEEecCCCccEEEEecC--CEEEE
Confidence            35689999999999999999997 4589999999999998875 477  689999999999999999998743  89999


Q ss_pred             EEEeCCCCCc
Q 045405          174 PIFNTQNPGV  183 (240)
Q Consensus       174 ~~~~s~~Pg~  183 (240)
                      ++||.+--|.
T Consensus       105 CVFnPpltG~  114 (126)
T PF06339_consen  105 CVFNPPLTGR  114 (126)
T ss_pred             EEcCCCCcCc
Confidence            9998654443

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=98.00  E-value=2.2e-05  Score=69.43  Aligned_cols=72  Identities=25%  Similarity=0.399  Sum_probs=46.0

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      |.+..++++++|-..|||+| .+++-.|||+|.+..+    +.+....-|.+|..+..|+|..|+....+++.+.++
T Consensus        35 g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~~----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~  106 (251)
T PF14499_consen   35 GPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHNG----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI  106 (251)
T ss_dssp             S-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEET----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred             CcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEcC----CCcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence            78899999999999999999 5799999999987653    223335679999999999999999876665544443

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=97.97  E-value=6.6e-05  Score=66.34  Aligned_cols=52  Identities=21%  Similarity=0.263  Sum_probs=43.7

Q ss_pred             CcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405          108 GGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV  165 (240)
Q Consensus       108 Gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~  165 (240)
                      +...++||| +..|++||++|++.+.+   +|+  ...+++||++++|+|..|.....
T Consensus        33 ~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~~--~~~l~~g~l~~i~p~~~H~~~~~   84 (278)
T PRK10296         33 ESVSGLHQH-DYYEFTLVLTGRYYQEI---NGK--RVLLERGDFVFIPLGSHHQSFYE   84 (278)
T ss_pred             hcCCCCccc-ccEEEEEEEeceEEEEE---CCE--EEEECCCcEEEeCCCCccceeee
Confidence            335689999 46999999999999887   466  67999999999999999976544

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=97.91  E-value=0.00021  Score=57.21  Aligned_cols=96  Identities=19%  Similarity=0.155  Sum_probs=54.5

Q ss_pred             CCceEEEecccCCCCCCccceEEEEEE-EcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCC-CEEEeC
Q 045405           78 FKRAVTFGDVFGFPAVNTQGVALFRID-LDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPG-KVFLIP  155 (240)
Q Consensus        78 ~G~~v~~~~~~~~P~l~~~gls~~~v~-l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~G-Dv~v~P  155 (240)
                      ..|.++.+.........  =-.+..+. .++|.....|+|....|+++|++|+..+.+.+..++ .+..|..- ..+.+|
T Consensus        14 ~RG~L~~~e~~~~ipf~--i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ip   90 (131)
T PF05523_consen   14 ERGSLSVIERFDDIPFE--IKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIP   90 (131)
T ss_dssp             TTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-
T ss_pred             CCCcEEEEeccCCCCCC--ccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEEC
Confidence            35567776655333233  12445553 445555999999999999999999999998765433 46677555 588999


Q ss_pred             CCCeEEEEecCCCCEEEEEEEeC
Q 045405          156 RALVHFQLNVGNEPATFIPIFNT  178 (240)
Q Consensus       156 ~G~~H~~~N~G~~~a~~i~~~~s  178 (240)
                      +|+.|.+.|.+++ +++++ +.+
T Consensus        91 pg~w~~~~~~s~~-svlLv-~as  111 (131)
T PF05523_consen   91 PGVWHGIKNFSED-SVLLV-LAS  111 (131)
T ss_dssp             TT-EEEEE---TT--EEEE-EES
T ss_pred             CchhhHhhccCCC-cEEEE-EcC
Confidence            9999999999877 66665 444

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PRK13501 transcriptional activator RhaR; Provisional

Probab=97.87  E-value=5.5e-05  Score=67.39  Aligned_cols=56  Identities=34%  Similarity=0.216  Sum_probs=46.1

Q ss_pred             cCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405          106 DVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus       106 ~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~  167 (240)
                      .+..-.++|||+ ..|++||++|++++.+   +|+  .+.+++||++++|+|.+|.+...++
T Consensus        26 ~~~~~~~~H~H~-~~ei~~i~~G~~~~~i---~~~--~~~l~~g~~~~I~p~~~H~~~~~~~   81 (290)
T PRK13501         26 YPQETFVEHTHQ-FCEIVIVWRGNGLHVL---NDH--PYRITCGDVFYIQAADHHSYESVHD   81 (290)
T ss_pred             CCCCCCcccccc-ceeEEEEecCceEEEE---CCe--eeeecCCeEEEEcCCCcccccccCC
Confidence            333446799995 5999999999999887   356  6899999999999999999876543

>PRK13500 transcriptional activator RhaR; Provisional

Probab=97.86  E-value=7.7e-05  Score=67.54  Aligned_cols=55  Identities=31%  Similarity=0.276  Sum_probs=45.8

Q ss_pred             CCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405          107 VGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus       107 pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~  167 (240)
                      |....++|||+ ..|++||++|++...+   +++  .+.+++||++++|+|..|.+....+
T Consensus        57 ~~~~~~~H~H~-~~el~~v~~G~g~~~v---~~~--~~~l~~Gdl~~I~~~~~H~~~~~~~  111 (312)
T PRK13500         57 PQDVFAEHTHD-FCELVIVWRGNGLHVL---NDR--PYRITRGDLFYIHADDKHSYASVND  111 (312)
T ss_pred             CCCCCCccccc-eEEEEEEEcCeEEEEE---CCE--EEeecCCeEEEECCCCeecccccCC
Confidence            33346899995 6999999999999887   355  6899999999999999999876444

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=97.81  E-value=6.8e-05  Score=66.31  Aligned_cols=59  Identities=20%  Similarity=0.208  Sum_probs=47.3

Q ss_pred             CcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEE
Q 045405          108 GGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPAT  171 (240)
Q Consensus       108 Gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~  171 (240)
                      +...++|||.+.-|++|+++|++.+.+   +++  ...+++||++++|+|..|.+...++....
T Consensus        33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~---~~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~~   91 (287)
T TIGR02297        33 GRNMPVHFHDRYYQLHYLTEGSIALQL---DEH--EYSEYAPCFFLTPPSVPHGFVTDLDADGH   91 (287)
T ss_pred             CCCCCCcccccceeEEEEeeCceEEEE---CCE--EEEecCCeEEEeCCCCccccccCCCcceE
Confidence            345789999645899999999998776   355  67999999999999999998765544333

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=97.76  E-value=9.6e-05  Score=53.33  Aligned_cols=59  Identities=15%  Similarity=0.136  Sum_probs=44.8

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEE
Q 045405           98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQL  163 (240)
Q Consensus        98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~  163 (240)
                      ++.......||.. ..++.  ..|++|||+|++++..  .+|+  ..++++||++++|+|..-.+.
T Consensus         7 ~~~g~w~~~pg~~-~~~~~--~~E~~~vleG~v~it~--~~G~--~~~~~aGD~~~~p~G~~~~w~   65 (74)
T PF05899_consen    7 FSAGVWECTPGKF-PWPYP--EDEFFYVLEGEVTITD--EDGE--TVTFKAGDAFFLPKGWTGTWE   65 (74)
T ss_dssp             EEEEEEEEECEEE-EEEES--SEEEEEEEEEEEEEEE--TTTE--EEEEETTEEEEE-TTEEEEEE
T ss_pred             EEEEEEEECCcee-EeeCC--CCEEEEEEEeEEEEEE--CCCC--EEEEcCCcEEEECCCCEEEEE
Confidence            5666778888763 33444  3899999999999875  4577  689999999999999866554

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.72  E-value=5.6e-05  Score=62.38  Aligned_cols=56  Identities=14%  Similarity=0.271  Sum_probs=49.6

Q ss_pred             ccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecC
Q 045405          110 INPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVG  166 (240)
Q Consensus       110 ~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G  166 (240)
                      +.+.|.|++ +|+-||++|++..-+-+.+++....-+++||.+++|+|.-|.+.-+.
T Consensus        85 FfEEhlh~d-eeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~  140 (179)
T KOG2107|consen   85 FFEEHLHED-EEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTP  140 (179)
T ss_pred             HHHHhcCch-hheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCc
Confidence            457999976 89999999999999998888877888999999999999999986543

>PRK13502 transcriptional activator RhaR; Provisional

Probab=97.69  E-value=0.00014  Score=64.35  Aligned_cols=56  Identities=29%  Similarity=0.242  Sum_probs=45.8

Q ss_pred             cCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405          106 DVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus       106 ~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~  167 (240)
                      -|+...++|||+ .-|++||++|++++.+   +++  .+.+++||++++|+|.+|.+...++
T Consensus        26 ~~~~~~~~H~h~-~~~l~~v~~G~~~~~i---~~~--~~~l~~g~l~li~~~~~H~~~~~~~   81 (282)
T PRK13502         26 YPQDVFAEHTHE-FCELVMVWRGNGLHVL---NER--PYRITRGDLFYIRAEDKHSYTSVND   81 (282)
T ss_pred             CCCCCCCccccc-eEEEEEEecCcEEEEE---CCE--EEeecCCcEEEECCCCcccccccCC
Confidence            334446899995 6999999999999887   355  6899999999999999998865443

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.67  E-value=7.5e-05  Score=67.18  Aligned_cols=102  Identities=17%  Similarity=0.173  Sum_probs=79.0

Q ss_pred             CCCccCcCCceEEEecccCCCCCCccc-e----EEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEE
Q 045405           71 DPTTFDVFKRAVTFGDVFGFPAVNTQG-V----ALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKV  145 (240)
Q Consensus        71 ~~~~~~~~G~~v~~~~~~~~P~l~~~g-l----s~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~  145 (240)
                      .+......++ ++.+-..+.|+|++.. +    -...--|.||-..|.|-|. ...+-||++|++-.++|+  |+  ...
T Consensus        61 sgeli~~~~a-~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHs-qsAlRFvveG~Ga~T~Vd--Ge--r~~  134 (351)
T COG3435          61 SGELISAREA-VRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHN-QSALRFVVEGKGAYTVVD--GE--RTP  134 (351)
T ss_pred             hhhccCcccc-eeEEEEecCCCCCCcccccHHHHhhhheecCcccCCccccc-ccceEEEEeccceeEeec--Cc--eee
Confidence            4443334444 4555567888888653 1    1344568899999999995 589999999999988885  44  468


Q ss_pred             ECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeC
Q 045405          146 LTPGKVFLIPRALVHFQLNVGNEPATFIPIFNT  178 (240)
Q Consensus       146 l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s  178 (240)
                      +++||+++.|++..|.--|.|++|++++-.++.
T Consensus       135 M~~GDfilTP~w~wHdHgn~g~eP~iWlDgLDi  167 (351)
T COG3435         135 MEAGDFILTPAWTWHDHGNEGTEPCIWLDGLDI  167 (351)
T ss_pred             ccCCCEEEccCceeccCCCCCCCceEEEcccch
Confidence            999999999999999999999999999866653

>PRK13503 transcriptional activator RhaS; Provisional

Probab=97.65  E-value=0.00011  Score=64.60  Aligned_cols=53  Identities=23%  Similarity=0.197  Sum_probs=44.6

Q ss_pred             CCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405          107 VGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV  165 (240)
Q Consensus       107 pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~  165 (240)
                      +....++||| +..|++||++|.+++.+.   ++  .+.+++||++++|+|..|.+.+.
T Consensus        24 ~~~~~~~H~H-~~~ei~~v~~G~~~~~i~---~~--~~~l~~g~~~~i~~~~~h~~~~~   76 (278)
T PRK13503         24 PQAAFPEHHH-DFHEIVIVEHGTGIHVFN---GQ--PYTLSGGTVCFVRDHDRHLYEHT   76 (278)
T ss_pred             cccccccccc-CceeEEEEecCceeeEec---CC--cccccCCcEEEECCCccchhhhc
Confidence            3455789999 459999999999998874   44  67999999999999999987654

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=97.58  E-value=0.0006  Score=58.90  Aligned_cols=75  Identities=17%  Similarity=0.182  Sum_probs=64.1

Q ss_pred             eEEEEEEEcCCc-ccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           98 VALFRIDLDVGG-INPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        98 ls~~~v~l~pGg-~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ++-..+++.|+| .-.|-.-++++.++||++|++.+.+.   |+  ++.|++|+..++|+|..|...|...+++.+..+-
T Consensus        61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~---G~--th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~r  135 (264)
T COG3257          61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAE---GK--THALREGGYAYLPPGSGWTLRNAQKEDSRFHWIR  135 (264)
T ss_pred             hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEc---Ce--EEEeccCCeEEeCCCCcceEeeccCCceEEEEEe
Confidence            455688998877 66777778999999999999999873   66  7899999999999999999999999988877654


Q ss_pred             e
Q 045405          177 N  177 (240)
Q Consensus       177 ~  177 (240)
                      .
T Consensus       136 k  136 (264)
T COG3257         136 K  136 (264)
T ss_pred             e
Confidence            3

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=97.42  E-value=0.00057  Score=62.98  Aligned_cols=88  Identities=14%  Similarity=0.015  Sum_probs=64.7

Q ss_pred             cCCceEEEecccCCCC-CCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeC
Q 045405           77 VFKRAVTFGDVFGFPA-VNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIP  155 (240)
Q Consensus        77 ~~G~~v~~~~~~~~P~-l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P  155 (240)
                      ..|..+..++..+-+. ..++  +.....|++|....+|-|. ...+++|++|+++..+.   ++  +.+.++||+|++|
T Consensus       230 ~~g~~l~y~NP~TG~~~~pti--~~~~q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~ig---~~--~~~W~~gD~f~vP  301 (335)
T TIGR02272       230 WHGLKLRYVNPATGGYPMPTI--GAFIQLLPKGFRTATYRST-DATVFCVVEGRGQVRIG---DA--VFRFSPKDVFVVP  301 (335)
T ss_pred             CceEEEEEeCCCCCCCcchhH--HHHHhccCCCCCCCCcccc-ccEEEEEEeCeEEEEEC---CE--EEEecCCCEEEEC
Confidence            3455567777655554 3433  3344678888899999884 58999999999999883   55  6789999999999


Q ss_pred             CCCeEEEEecCCCCEEEEE
Q 045405          156 RALVHFQLNVGNEPATFIP  174 (240)
Q Consensus       156 ~G~~H~~~N~G~~~a~~i~  174 (240)
                      .-..|...|.  +++.++.
T Consensus       302 sW~~~~h~a~--~da~Lf~  318 (335)
T TIGR02272       302 SWHPVRFEAS--DDAVLFS  318 (335)
T ss_pred             CCCcEecccC--CCeEEEE
Confidence            9988877664  4555443

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=97.28  E-value=0.00066  Score=55.78  Aligned_cols=67  Identities=18%  Similarity=0.185  Sum_probs=44.2

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405           98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus        98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      |+...++++..   +.-|.-.-+|+.||++|++.+..   +|+  ....++||+++||+|.--.+...  ..++++.
T Consensus        77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~---~G~--~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Y  143 (152)
T PF06249_consen   77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI---DGQ--TVTAKPGDVIFIPKGSTITFSTP--DYARFFY  143 (152)
T ss_dssp             SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE---TTE--EEEEETT-EEEE-TT-EEEEEEE--EEEEEEE
T ss_pred             eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE---CCE--EEEEcCCcEEEECCCCEEEEecC--CCEEEEE
Confidence            45555555553   34577677999999999998874   477  67899999999999986655433  2344443

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=97.21  E-value=0.0038  Score=50.94  Aligned_cols=74  Identities=16%  Similarity=0.163  Sum_probs=45.8

Q ss_pred             EcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCC
Q 045405          105 LDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPG  182 (240)
Q Consensus       105 l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg  182 (240)
                      =.|+.-.--|..+ .+|++|-++|...+.+++. |+.....+++||++..|++++|.-+-..  +.+-+++-....++
T Consensus        40 GGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e~-g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr~R~~~  113 (151)
T PF06052_consen   40 GGPNQRTDYHINE-TEEFFYQLKGDMCLKVVED-GKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIERKRPEG  113 (151)
T ss_dssp             ESSB--SSEEE-S-S-EEEEEEES-EEEEEEET-TEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE---TT
T ss_pred             cCCCCCCccccCC-cceEEEEEeCcEEEEEEeC-CceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEeccCCC
Confidence            3455555668886 5999999999999999875 7767899999999999999999987653  33444444333333

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=97.16  E-value=0.0067  Score=50.93  Aligned_cols=64  Identities=17%  Similarity=0.206  Sum_probs=53.7

Q ss_pred             CCcccCCccCCCC-CeEEEEeeCEEEEEEEccC------CeEEEEEECCC--CEEEeCCCCeEEEEecCCCCE
Q 045405          107 VGGINPPHTHPRG-TEAGIVTRGTVLVGLVTTN------NTFFSKVLTPG--KVFLIPRALVHFQLNVGNEPA  170 (240)
Q Consensus       107 pGg~~~pH~Hp~a-~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~G--Dv~v~P~G~~H~~~N~G~~~a  170 (240)
                      ||-++..|||..- .+++.|++|++....+|-.      |+....++.+-  ..+.+|+|..|.++|.+++..
T Consensus        54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~  126 (173)
T COG1898          54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAE  126 (173)
T ss_pred             CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceE
Confidence            8889999999777 8999999999998888743      35555667655  899999999999999998763

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=97.05  E-value=0.01  Score=49.89  Aligned_cols=77  Identities=19%  Similarity=0.218  Sum_probs=58.5

Q ss_pred             cCCcccCCccCC--CCCeEEEEeeCEEEEEEEccC------CeEEEEEECC--CCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405          106 DVGGINPPHTHP--RGTEAGIVTRGTVLVGLVTTN------NTFFSKVLTP--GKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus       106 ~pGg~~~pH~Hp--~a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      .+|.++.+|+|.  .-..+++|++|++...++|..      |+.....|.+  +..++||+|+.|.+.+.+++ +.++-.
T Consensus        52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~  130 (176)
T TIGR01221        52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK  130 (176)
T ss_pred             cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence            668889999983  358999999999999999853      5666777876  66999999999999998866 444433


Q ss_pred             EeC-CCCCc
Q 045405          176 FNT-QNPGV  183 (240)
Q Consensus       176 ~~s-~~Pg~  183 (240)
                      .+. -+|+.
T Consensus       131 ~~~~y~p~~  139 (176)
T TIGR01221       131 CTDYYAPEY  139 (176)
T ss_pred             CCCCcCccc
Confidence            332 34544

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=96.97  E-value=0.006  Score=51.35  Aligned_cols=79  Identities=15%  Similarity=0.153  Sum_probs=55.6

Q ss_pred             EcCCcccCCccCCCC---CeEEEEeeCEEEEEEEccC------CeEEEEEECCCC--EEEeCCCCeEEEEecCCCCEEEE
Q 045405          105 LDVGGINPPHTHPRG---TEAGIVTRGTVLVGLVTTN------NTFFSKVLTPGK--VFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus       105 l~pGg~~~pH~Hp~a---~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~GD--v~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      -.+|.++.+|+|..-   ..++.|++|++...++|-.      |+.....|.+++  .++||+|+.|.+.+.+++ +.++
T Consensus        50 s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~-a~v~  128 (176)
T PF00908_consen   50 SKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD-AEVL  128 (176)
T ss_dssp             EETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE-EEEE
T ss_pred             ccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc-eEEE
Confidence            345888999999664   5899999999999998832      677788887765  799999999999998766 4443


Q ss_pred             EEEe-CCCCCce
Q 045405          174 PIFN-TQNPGVS  184 (240)
Q Consensus       174 ~~~~-s~~Pg~~  184 (240)
                      ...+ .-+|+..
T Consensus       129 Y~~t~~y~p~~e  140 (176)
T PF00908_consen  129 YKVTNYYDPEDE  140 (176)
T ss_dssp             EEESS---GGGE
T ss_pred             EecCCccCcccc
Confidence            3333 2345443

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=96.92  E-value=0.0079  Score=47.28  Aligned_cols=62  Identities=15%  Similarity=0.075  Sum_probs=48.0

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV  165 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~  165 (240)
                      .+......-.||..   +++-...|+.++|+|++++.-  .+|+  ..++++||++++|+|..=.+.-.
T Consensus        44 ~~~~GiWe~TpG~~---r~~y~~~E~chil~G~v~~T~--d~Ge--~v~~~aGD~~~~~~G~~g~W~V~  105 (116)
T COG3450          44 QVETGIWECTPGKF---RVTYDEDEFCHILEGRVEVTP--DGGE--PVEVRAGDSFVFPAGFKGTWEVL  105 (116)
T ss_pred             CeeEeEEEecCccc---eEEcccceEEEEEeeEEEEEC--CCCe--EEEEcCCCEEEECCCCeEEEEEe
Confidence            45666777888764   555556999999999998763  4466  67999999999999987666543

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=96.79  E-value=0.024  Score=47.47  Aligned_cols=82  Identities=17%  Similarity=0.203  Sum_probs=57.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe----E----EEEEECCCCEEEeCCCCeEEEEecC-C
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT----F----FSKVLTPGKVFLIPRALVHFQLNVG-N  167 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~----~----~~~~l~~GDv~v~P~G~~H~~~N~G-~  167 (240)
                      .+.+..+...||...+.|=|.++.-++.|++|+++.......+.    .    ....+..|.+.+++.+.+|.+.|.+ +
T Consensus        74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~  153 (175)
T PF05995_consen   74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD  153 (175)
T ss_dssp             T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred             CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence            47788899999999999999777778899999988776543221    1    2345688888888999999999886 7


Q ss_pred             CCEEEEEEEeC
Q 045405          168 EPATFIPIFNT  178 (240)
Q Consensus       168 ~~a~~i~~~~s  178 (240)
                      ++++-+=++..
T Consensus       154 ~~avSLHvYsp  164 (175)
T PF05995_consen  154 EPAVSLHVYSP  164 (175)
T ss_dssp             S-EEEEEEEES
T ss_pred             CCEEEEEEcCC
Confidence            88887766654

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.64  E-value=0.0073  Score=54.62  Aligned_cols=91  Identities=16%  Similarity=0.154  Sum_probs=66.4

Q ss_pred             cCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCC
Q 045405           77 VFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPR  156 (240)
Q Consensus        77 ~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~  156 (240)
                      -.|..+..+|..+=--.. --|....--|+||-...+|-|.+ +-+.-|.+|++++.+   +|+  ++..++||+|++|.
T Consensus       241 ~dG~~~ryvNP~TGg~~m-ptI~a~mqlL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~I---g~~--rf~~~~~D~fvVPs  313 (351)
T COG3435         241 FDGYKMRYVNPVTGGYAM-PTIGAFMQLLPPGFHGKAHRHTD-STIYHVVEGSGYTII---GGE--RFDWSAGDIFVVPS  313 (351)
T ss_pred             CCcceEEEecCCCCCCcC-chHHHHHHhcCCcccCCceeccC-CEEEEEEecceeEEE---CCE--EeeccCCCEEEccC
Confidence            567777777654321111 12334445678888888998865 788899999999887   366  67889999999999


Q ss_pred             CCeEEEEecCCCCEEEEEE
Q 045405          157 ALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus       157 G~~H~~~N~G~~~a~~i~~  175 (240)
                      =..|...| |.+++.++++
T Consensus       314 W~~~~~~~-gs~da~LFsf  331 (351)
T COG3435         314 WAWHEHVN-GSEDAVLFSF  331 (351)
T ss_pred             cceeeccc-CCcceEEEec
Confidence            99999888 4777777653

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=96.58  E-value=0.022  Score=46.69  Aligned_cols=67  Identities=18%  Similarity=0.188  Sum_probs=47.2

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405           98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus        98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      +++....+++ ...++  --+-+|+-||++|++.+...   |+  +..-++||++++|+|.---+--.|+  +.++-
T Consensus       100 l~aG~m~~~~-~tf~w--tl~yDe~d~VlEGrL~V~~~---g~--tv~a~aGDvifiPKgssIefst~ge--a~fly  166 (176)
T COG4766         100 LGAGLMEMKN-TTFPW--TLNYDEIDYVLEGRLHVRID---GR--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLY  166 (176)
T ss_pred             cccceeeecc-ccCcc--eecccceeEEEeeeEEEEEc---CC--eEecCCCcEEEecCCCeEEEeccce--EEEEE
Confidence            4455556666 44433  33568999999999998863   55  5678999999999998766655444  55543

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=96.16  E-value=0.03  Score=47.94  Aligned_cols=69  Identities=23%  Similarity=0.329  Sum_probs=48.6

Q ss_pred             EEEEEEcC-CcccCCccCCCCCeEEEEeeCEEEEEEEccCC-----------------------------------eEEE
Q 045405          100 LFRIDLDV-GGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-----------------------------------TFFS  143 (240)
Q Consensus       100 ~~~v~l~p-Gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-----------------------------------~~~~  143 (240)
                      ...+-+.+ |...+.|+.+ ..-+..+++|+=++.+..+..                                   +.+.
T Consensus       132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~  210 (251)
T PF13621_consen  132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE  210 (251)
T ss_dssp             EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred             ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence            44566666 5578899986 578999999998888887641                                   1246


Q ss_pred             EEECCCCEEEeCCCCeEEEEecCCCC
Q 045405          144 KVLTPGKVFLIPRALVHFQLNVGNEP  169 (240)
Q Consensus       144 ~~l~~GDv~v~P~G~~H~~~N~G~~~  169 (240)
                      .+|++||+++||+|..|++.|..+++
T Consensus       211 ~~l~pGD~LfiP~gWwH~V~~~~~~~  236 (251)
T PF13621_consen  211 VVLEPGDVLFIPPGWWHQVENLSDDD  236 (251)
T ss_dssp             EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred             EEECCCeEEEECCCCeEEEEEcCCCC
Confidence            79999999999999999999984344

...

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=96.00  E-value=0.03  Score=53.13  Aligned_cols=55  Identities=18%  Similarity=0.150  Sum_probs=37.4

Q ss_pred             CccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405          113 PHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus       113 pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      .-.+-+++|++++.+|++++.-  +-|+   ..+++||+++||+|+.+.+.=.  +++..+.
T Consensus       140 ~f~NaDGD~Li~~q~G~l~l~T--e~G~---L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi  194 (424)
T PF04209_consen  140 AFRNADGDELIFPQQGSLRLET--EFGR---LDVRPGDYVVIPRGTRFRVELP--GPARGYI  194 (424)
T ss_dssp             EEEESSEEEEEEEEES-EEEEE--TTEE---EEE-TTEEEEE-TT--EEEE-S--SSEEEEE
T ss_pred             ceEcCCCCEEEEEEECCEEEEe--cCee---EEEcCCeEEEECCeeEEEEEeC--CCceEEE
Confidence            3446788999999999998774  3455   4799999999999999988765  4555443

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=95.36  E-value=0.18  Score=46.00  Aligned_cols=67  Identities=21%  Similarity=0.173  Sum_probs=43.6

Q ss_pred             EEEEEEEcCCc--ccCCccCCCCCeEEEEeeCEEEEEEEccCC------------------eEEEEEECCCCEEEeCCCC
Q 045405           99 ALFRIDLDVGG--INPPHTHPRGTEAGIVTRGTVLVGLVTTNN------------------TFFSKVLTPGKVFLIPRAL  158 (240)
Q Consensus        99 s~~~v~l~pGg--~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g------------------~~~~~~l~~GDv~v~P~G~  158 (240)
                      ..+-+.+.|+|  -+.|||=. .+-+++=++|+=+..+..+..                  .....+|++||++++|+|.
T Consensus       114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~  192 (319)
T PF08007_consen  114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW  192 (319)
T ss_dssp             EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred             cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence            34556788888  78999874 366666677876666654210                  1236899999999999999


Q ss_pred             eEEEEecC
Q 045405          159 VHFQLNVG  166 (240)
Q Consensus       159 ~H~~~N~G  166 (240)
                      .|.....+
T Consensus       193 ~H~~~~~~  200 (319)
T PF08007_consen  193 WHQAVTTD  200 (319)
T ss_dssp             EEEEEESS
T ss_pred             cCCCCCCC
Confidence            99999987

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PF12852 Cupin_6: Cupin

Probab=94.91  E-value=0.13  Score=42.83  Aligned_cols=44  Identities=20%  Similarity=0.326  Sum_probs=35.6

Q ss_pred             CeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecC
Q 045405          120 TEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVG  166 (240)
Q Consensus       120 ~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G  166 (240)
                      .-+.+|++|+.++.+-+ .+.  ...|++||++++|+|..|.+....
T Consensus        36 ~~fh~V~~G~~~l~~~~-~~~--~~~L~~GDivllp~g~~H~l~~~~   79 (186)
T PF12852_consen   36 ASFHVVLRGSCWLRVPG-GGE--PIRLEAGDIVLLPRGTAHVLSSDP   79 (186)
T ss_pred             eEEEEEECCeEEEEEcC-CCC--eEEecCCCEEEEcCCCCeEeCCCC
Confidence            66779999999998632 133  679999999999999999995543

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=94.82  E-value=0.48  Score=45.07  Aligned_cols=62  Identities=13%  Similarity=0.216  Sum_probs=45.4

Q ss_pred             cCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEe
Q 045405          111 NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFN  177 (240)
Q Consensus       111 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~  177 (240)
                      ...-.+-+++|++++.+|++.+.-.  -|+   ..+++||+++||+|+.+.+.=.|.....++..+.
T Consensus       140 ~~~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g  201 (429)
T TIGR01015       140 NRAFYNADGDFLIVPQQGALLITTE--FGR---LLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG  201 (429)
T ss_pred             cceeeccCCCEEEEEEeCcEEEEEe--ccc---eEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence            3445567889999999999988753  355   5889999999999999888655533344444444

Missing in human disease alkaptonuria.

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=94.71  E-value=0.26  Score=46.92  Aligned_cols=58  Identities=16%  Similarity=0.148  Sum_probs=43.2

Q ss_pred             cCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405          111 NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus       111 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      ...-.+-+++|++++.+|++++.-  +-|+   ..+++||++|||+|+.+.+.= .+.+++.+.
T Consensus       146 ~~~f~NaDGD~Livpq~G~l~i~T--EfG~---L~v~pgei~VIPRG~~frv~l-~~gp~rgyi  203 (438)
T PRK05341        146 DRYFYNADGELLIVPQQGRLRLAT--ELGV---LDVEPGEIAVIPRGVKFRVEL-PDGPARGYV  203 (438)
T ss_pred             cceeecCCCCEEEEEEeCCEEEEE--eccc---eEecCCCEEEEcCccEEEEec-CCCCeeEEE
Confidence            334556788999999999998774  3354   578999999999999988763 334555443

>COG3806 ChrR Transcriptional activator [Transcription]

Probab=94.64  E-value=0.21  Score=42.79  Aligned_cols=91  Identities=15%  Similarity=0.124  Sum_probs=69.3

Q ss_pred             ccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEE
Q 045405           74 TFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFL  153 (240)
Q Consensus        74 ~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v  153 (240)
                      .....|+++..+...+     +-...++++.+.||..+|-|+|- .-|.+.|++|..    .|++|     ++.+||+..
T Consensus       109 ~W~~~G~rv~~v~l~~-----dds~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~~----sde~G-----~y~vgD~~~  173 (216)
T COG3806         109 RWLGPGGRVEPVRLPT-----DDSRRVALLKIEPGRSFPDHTHV-GIERTAVLEGAF----SDENG-----EYLVGDFTL  173 (216)
T ss_pred             eeecCCcceeecccCC-----CCCceeEEEEeccCccccccccc-ceEEEEEEeecc----ccCCC-----ccccCceee
Confidence            3456677666654333     22567999999999999999994 599999999974    45655     568999999


Q ss_pred             eCCCCeEEEEecCCCCEEEEEEEeCC
Q 045405          154 IPRALVHFQLNVGNEPATFIPIFNTQ  179 (240)
Q Consensus       154 ~P~G~~H~~~N~G~~~a~~i~~~~s~  179 (240)
                      -+.+.-|.-.-..+.++..+++++.+
T Consensus       174 ~d~~v~H~piv~~~~eClcl~al~~~  199 (216)
T COG3806         174 ADGTVQHSPIVLPPGECLCLAALDGP  199 (216)
T ss_pred             cCCccccccccCCCCCceEEEEcCCC
Confidence            99999998666667788888877643

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=94.54  E-value=0.13  Score=39.76  Aligned_cols=62  Identities=23%  Similarity=0.240  Sum_probs=44.8

Q ss_pred             CcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCC--CCeEEEEecCC-CCEEEE
Q 045405          108 GGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPR--ALVHFQLNVGN-EPATFI  173 (240)
Q Consensus       108 Gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~--G~~H~~~N~G~-~~a~~i  173 (240)
                      +.-.++|-|.+-+-+.||++|+++-.  |+.|.  ..++++||+-+.-+  |+.|.-.|.++ +++..+
T Consensus        39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l  103 (107)
T PF02678_consen   39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL  103 (107)
T ss_dssp             TTEEEEEEECSEEEEEEEEESEEEEE--ETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred             CCCCCCcCCCCceEEEEEecCEEEEE--CCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence            44568899977666779999998654  55566  56899999887755  57899999887 666654

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length

Probab=94.42  E-value=0.28  Score=42.73  Aligned_cols=67  Identities=21%  Similarity=0.349  Sum_probs=42.8

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEee-CEEEEEEEccC--C--------------eEE------EEEECCCCEEEeCCCC
Q 045405          102 RIDLDVGGINPPHTHPRGTEAGIVTR-GTVLVGLVTTN--N--------------TFF------SKVLTPGKVFLIPRAL  158 (240)
Q Consensus       102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~-G~~~v~~v~~~--g--------------~~~------~~~l~~GDv~v~P~G~  158 (240)
                      .+.+.+|+..|.|+|..-.|=++.-- |.+.+.+...+  +              +.+      ..+|++|+.+.+++|.
T Consensus        91 im~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~  170 (225)
T PF07385_consen   91 IMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGI  170 (225)
T ss_dssp             EEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTE
T ss_pred             heeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCC
Confidence            46778999999999998888887775 57766665432  2              111      3689999999999999


Q ss_pred             eEEEEecCCC
Q 045405          159 VHFQLNVGNE  168 (240)
Q Consensus       159 ~H~~~N~G~~  168 (240)
                      .|++...+..
T Consensus       171 yH~Fw~e~g~  180 (225)
T PF07385_consen  171 YHWFWGEGGD  180 (225)
T ss_dssp             EEEEEE-TTS
T ss_pred             eeeEEecCCC
Confidence            9999875444

The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A

Probab=94.37  E-value=0.21  Score=37.57  Aligned_cols=71  Identities=24%  Similarity=0.284  Sum_probs=34.5

Q ss_pred             EEEcCCcccCCccCCCCC--eEEEEe--eCEEEEEEEccCC------------------eEEEEEECCCCEEEeCCCCeE
Q 045405          103 IDLDVGGINPPHTHPRGT--EAGIVT--RGTVLVGLVTTNN------------------TFFSKVLTPGKVFLIPRALVH  160 (240)
Q Consensus       103 v~l~pGg~~~pH~Hp~a~--Ei~yVl--~G~~~v~~v~~~g------------------~~~~~~l~~GDv~v~P~G~~H  160 (240)
                      ...++|+..++|.|+++.  -++||-  ++...+.+.+++.                  .......++||+++||.-+.|
T Consensus         5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H   84 (101)
T PF13759_consen    5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH   84 (101)
T ss_dssp             EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred             EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence            456788899999998752  222332  2333344444321                  234568899999999999999


Q ss_pred             EEE-ecCCCCEEEE
Q 045405          161 FQL-NVGNEPATFI  173 (240)
Q Consensus       161 ~~~-N~G~~~a~~i  173 (240)
                      ... |.++++-+.|
T Consensus        85 ~v~p~~~~~~Risi   98 (101)
T PF13759_consen   85 GVPPNNSDEERISI   98 (101)
T ss_dssp             EE----SSS-EEEE
T ss_pred             eccCcCCCCCEEEE
Confidence            975 4455443433

>PLN02658 homogentisate 1,2-dioxygenase

Probab=94.21  E-value=0.38  Score=45.80  Aligned_cols=55  Identities=15%  Similarity=0.212  Sum_probs=41.7

Q ss_pred             CccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405          113 PHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus       113 pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      .-.+-+++|++++.+|++.+.-  +-|+   ..+++||+++||+|+.+.+.= .+++++.+
T Consensus       141 ~f~NaDGD~Livpq~G~l~i~T--EfG~---L~v~pgei~VIPRG~~frv~l-~~gp~rgy  195 (435)
T PLN02658        141 AFCNADGDFLIVPQQGRLWIKT--ELGK---LQVSPGEIVVIPRGFRFAVDL-PDGPSRGY  195 (435)
T ss_pred             eeecCCCCEEEEEEeCCEEEEE--eccc---eEecCCCEEEecCccEEEEec-CCCCeeEE
Confidence            3556789999999999998774  3355   578999999999999987753 23454444

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=94.18  E-value=0.22  Score=44.10  Aligned_cols=49  Identities=20%  Similarity=0.300  Sum_probs=38.1

Q ss_pred             CccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405          113 PHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus       113 pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~  167 (240)
                      ||-. +.-++.++++|++.+.+   +++  .+.+++||++++|+|.+|......+
T Consensus        44 ~~~~-~~~~i~~~~~G~~~~~~---~~~--~~~~~~g~~i~i~p~~~h~~~~~~~   92 (290)
T PRK10572         44 PLGM-KGYILNLTIRGQGVIFN---GGR--AFVCRPGDLLLFPPGEIHHYGRHPD   92 (290)
T ss_pred             CCCc-cceEEEEEEeccEEEec---CCe--eEecCCCCEEEECCCCceeeccCCC
Confidence            3443 34688999999998764   355  6799999999999999998765443

>COG1741 Pirin-related protein [General function prediction only]

Probab=93.93  E-value=0.2  Score=45.13  Aligned_cols=60  Identities=25%  Similarity=0.305  Sum_probs=48.2

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCC--CeEEEEec
Q 045405          102 RIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRA--LVHFQLNV  165 (240)
Q Consensus       102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G--~~H~~~N~  165 (240)
                      ...+.||.-++||-|.+-+-+.||++|+++-.  |+.|.  ...+++||+-..-+|  +.|.-.|.
T Consensus        48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~  109 (276)
T COG1741          48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGN--KGVIRPGDVQWMTAGSGIVHSEMNP  109 (276)
T ss_pred             cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCc--eeeecccceeEEcCCCceeecccCC
Confidence            45689999999999988777779999998765  44455  578999999887654  68888886

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=93.76  E-value=0.36  Score=43.19  Aligned_cols=62  Identities=10%  Similarity=-0.034  Sum_probs=48.3

Q ss_pred             cCCcccCCccC-CCCCeEEEEeeCEEEEEEEccCCeE-EEEEECC-CCEEEeCCCCeEEEEecCC
Q 045405          106 DVGGINPPHTH-PRGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTP-GKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus       106 ~pGg~~~pH~H-p~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~-GDv~v~P~G~~H~~~N~G~  167 (240)
                      -|+++..+|-| +...|.+.|++|++.+.+.++++.. ....+.+ ++.-++|++..|...-..+
T Consensus        19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~   83 (287)
T PRK12335         19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASD   83 (287)
T ss_pred             chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCC
Confidence            36788899999 7888999999999999998887743 3345555 4565799999999887543

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=93.61  E-value=1.8  Score=37.15  Aligned_cols=138  Identities=13%  Similarity=0.094  Sum_probs=86.4

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeE-EEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      +.......+++|..+-..-. ....+++|++|.+.+...+++|+. ....+.+||++-+..+..+.....-.++.+++.+
T Consensus        35 ~~~~~~~~~~kge~l~~~Gd-~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~i  113 (230)
T PRK09391         35 GLVASEFSYKKGEEIYGEGE-PADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRLI  113 (230)
T ss_pred             cceeeeEEECCCCEEECCCC-CCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEEE
Confidence            45667788888886533222 457899999999999998888763 3455689998876555433222222234444322


Q ss_pred             Ee-------CCCCCcee----------------------------ccchhh------cC----CCCCCHHHHHhhcCCCH
Q 045405          176 FN-------TQNPGVSD----------------------------SIGTLF------DT----TPPVPNEVLTKSFRVGD  210 (240)
Q Consensus       176 ~~-------s~~Pg~~~----------------------------~~~~lf------~s----~~~~p~~vla~af~v~~  210 (240)
                      -.       ..+|....                            +...+.      +.    ...++.+.||..+|++.
T Consensus       114 ~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGisr  193 (230)
T PRK09391        114 KRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVAAFLLEMDERLGGAGMMALPMSRRDIADYLGLTI  193 (230)
T ss_pred             EHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCEEEecCCHHHHHHHHCCCH
Confidence            11       12442110                            111111      10    01467899999999999


Q ss_pred             HHHHHHHhhcCCCceEEecCCeeee
Q 045405          211 DVINTIRAARAQSSWINILDGRSIS  235 (240)
Q Consensus       211 ~~v~~l~~~~~~~~~i~~~~~~~~~  235 (240)
                      +++.++.+.+...+.|...+++++.
T Consensus       194 etlsR~L~~L~~~GlI~~~~~~~i~  218 (230)
T PRK09391        194 ETVSRALSQLQDRGLIGLSGARQIE  218 (230)
T ss_pred             HHHHHHHHHHHHCCcEEecCCceEE
Confidence            9999998888888888876655554

>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1

Probab=93.47  E-value=0.66  Score=38.25  Aligned_cols=70  Identities=14%  Similarity=0.246  Sum_probs=42.4

Q ss_pred             EEEEEEEcCCcccCCccCCCCCeEE----EEe-eCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           99 ALFRIDLDVGGINPPHTHPRGTEAG----IVT-RGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        99 s~~~v~l~pGg~~~pH~Hp~a~Ei~----yVl-~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      .+....+.||+.+.||.-+....+-    .++ .+...+.+   +++  ....++|+++++--...|...|.|+++-+.+
T Consensus        81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v---~~~--~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L  155 (163)
T PF05118_consen   81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV---GGE--TRHWREGECWVFDDSFEHEVWNNGDEDRVVL  155 (163)
T ss_dssp             EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE---TTE--EEB--CTEEEEE-TTS-EEEEESSSS-EEEE
T ss_pred             hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE---CCe--EEEeccCcEEEEeCCEEEEEEeCCCCCEEEE
Confidence            4566788999999999876433321    122 12233333   234  5678999999999999999999998764444

14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=93.08  E-value=0.74  Score=40.83  Aligned_cols=66  Identities=14%  Similarity=0.144  Sum_probs=46.1

Q ss_pred             ceEEEEEEEcCCccc-----CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405           97 GVALFRIDLDVGGIN-----PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus        97 gls~~~v~l~pGg~~-----~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~  167 (240)
                      ++.+.++...+..+.     ..|.+.+.-.++++++|++.+..   +|+  ...+++||++++|.+.+|.+.-.++
T Consensus        44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~---~g~--~~~l~~G~~~l~~~~~p~~~~~~~~  114 (302)
T PRK09685         44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ---DDR--QVQLAAGDITLIDASRPCSIYPQGL  114 (302)
T ss_pred             CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE---CCe--EEEEcCCCEEEEECCCCcEeecCCC
Confidence            456666666665331     23444444557788999998876   356  6789999999999999998765443

>KOG3706 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.06  E-value=0.066  Score=51.37  Aligned_cols=88  Identities=17%  Similarity=0.153  Sum_probs=57.3

Q ss_pred             cCCceEEEecccCCCCC--------Ccc-c-eEEEEEEEcCCc--ccCCccCCCCCeEEEEeeCEEEEEEEccCC-----
Q 045405           77 VFKRAVTFGDVFGFPAV--------NTQ-G-VALFRIDLDVGG--INPPHTHPRGTEAGIVTRGTVLVGLVTTNN-----  139 (240)
Q Consensus        77 ~~G~~v~~~~~~~~P~l--------~~~-g-ls~~~v~l~pGg--~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-----  139 (240)
                      ..|.++..+++..|-.-        ++. | +--+-+.|.|-|  -.+|||- +-+-++.=++|+=...+..|.-     
T Consensus       285 q~~cSiqllnPqty~drlwq~cevlqeqFgc~vGaNvYLTPagSqGfaPHyD-dIeaFvlQvEGrK~Wrly~P~~~~eel  363 (629)
T KOG3706|consen  285 QKGCSIQLLNPQTYKDRLWQICEVLQEQFGCLVGANVYLTPAGSQGFAPHYD-DIEAFVLQVEGRKHWRLYHPTVPLEEL  363 (629)
T ss_pred             hcCceEEeeCchhHHHHHHHHHHHHHHHhccccccceeecCCCCCCCCCchh-hhhhhhheeccceeeEeecCCCcHhhh
Confidence            45667777776665421        110 1 122345666544  4899998 4467778889987766665431     


Q ss_pred             --------------e-EEEEEECCCCEEEeCCCCeEEEEec
Q 045405          140 --------------T-FFSKVLTPGKVFLIPRALVHFQLNV  165 (240)
Q Consensus       140 --------------~-~~~~~l~~GDv~v~P~G~~H~~~N~  165 (240)
                                    + ++...|++||+++||+|.+|-....
T Consensus       364 ~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t~  404 (629)
T KOG3706|consen  364 ALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADTP  404 (629)
T ss_pred             hhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeecccc
Confidence                          1 2357899999999999999986543

>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]

Probab=92.91  E-value=0.5  Score=39.30  Aligned_cols=77  Identities=21%  Similarity=0.277  Sum_probs=48.8

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEE--ccCC----eEEEEEECCCCEEEeCCCCeEEEEecCCCCEE
Q 045405           98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLV--TTNN----TFFSKVLTPGKVFLIPRALVHFQLNVGNEPAT  171 (240)
Q Consensus        98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v--~~~g----~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~  171 (240)
                      +++..+++.||...|+|-| +-.-++=|++|.=+-.+.  +..+    ....+...+|+|- ..+|.+|.+.|+|.....
T Consensus        73 ltV~~~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdrs~  150 (191)
T COG5553          73 LTVYHITLSPGVQYPPHNH-LMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDRSG  150 (191)
T ss_pred             EEEEEEEeCCCcccCCccc-chheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCccc
Confidence            7889999999999999999 567777888885332221  1111    0113456677776 334777777777655443


Q ss_pred             EEEEE
Q 045405          172 FIPIF  176 (240)
Q Consensus       172 ~i~~~  176 (240)
                      .|-++
T Consensus       151 aiHvy  155 (191)
T COG5553         151 AIHVY  155 (191)
T ss_pred             eEEEE
Confidence            34333

>TIGR02466 conserved hypothetical protein

Probab=92.87  E-value=0.61  Score=40.03  Aligned_cols=74  Identities=22%  Similarity=0.228  Sum_probs=44.5

Q ss_pred             EEEEEEcCCcccCCccCCCC--CeEEEEe--eCEEEEEEEccCC------------------eEEEEEECCCCEEEeCCC
Q 045405          100 LFRIDLDVGGINPPHTHPRG--TEAGIVT--RGTVLVGLVTTNN------------------TFFSKVLTPGKVFLIPRA  157 (240)
Q Consensus       100 ~~~v~l~pGg~~~pH~Hp~a--~Ei~yVl--~G~~~v~~v~~~g------------------~~~~~~l~~GDv~v~P~G  157 (240)
                      .-...+++|+....|.||++  +-++||-  +|.+.+.+.++..                  ......-++||+++||.-
T Consensus        98 ~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~  177 (201)
T TIGR02466        98 AWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESW  177 (201)
T ss_pred             EeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCC
Confidence            34566788999999999985  2233444  2222333333210                  011234489999999999


Q ss_pred             CeEEEE-ecCCCCEEEE
Q 045405          158 LVHFQL-NVGNEPATFI  173 (240)
Q Consensus       158 ~~H~~~-N~G~~~a~~i  173 (240)
                      +.|... |.++++-+-|
T Consensus       178 L~H~v~p~~~~~~RISi  194 (201)
T TIGR02466       178 LRHEVPPNESEEERISV  194 (201)
T ss_pred             CceecCCCCCCCCEEEE
Confidence            999975 5455543333

This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=92.85  E-value=0.75  Score=40.11  Aligned_cols=72  Identities=14%  Similarity=0.109  Sum_probs=55.2

Q ss_pred             cceEEEEEEEcCCcccCC-ccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           96 QGVALFRIDLDVGGINPP-HTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      -.+-+..+.++||+..|- -+|- -+-=.||++|++...+.   +.  ...+++||.+..-+-.+.+.+..|......+
T Consensus       180 ~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrLn---~d--wv~V~aGD~mwm~A~cpQacyagG~g~frYL  252 (264)
T COG3257         180 FDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRLN---NN--WVPVEAGDYIWMGAYCPQACYAGGRGAFRYL  252 (264)
T ss_pred             cceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEeec---Cc--eEEeecccEEEeeccChhhhccCCCCceEEE
Confidence            367888999999998764 3442 24457999999987763   23  6799999999999999999888776654443

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=92.45  E-value=3.9  Score=34.00  Aligned_cols=130  Identities=8%  Similarity=0.041  Sum_probs=79.2

Q ss_pred             EEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe-EEEEEECCCCEEEeC----CCCeEEEEecCCCCEEEEEE
Q 045405          101 FRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT-FFSKVLTPGKVFLIP----RALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus       101 ~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~-~~~~~l~~GDv~v~P----~G~~H~~~N~G~~~a~~i~~  175 (240)
                      ....+++|..+-..-. ..+.+++|++|.+++...+.+|+ .....+.+||++-..    ....+...-.-.++..++.+
T Consensus        21 ~~~~~~kg~~l~~~g~-~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i   99 (211)
T PRK11753         21 HIHKYPAKSTLIHAGE-KAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI   99 (211)
T ss_pred             eEEEeCCCCEEEeCCC-CCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEE
Confidence            4667888886533222 35789999999999988777664 334578999998442    22222211112344444432


Q ss_pred             Ee-------CCCCCcee----------------------------ccchhh--cC------C-----CCCCHHHHHhhcC
Q 045405          176 FN-------TQNPGVSD----------------------------SIGTLF--DT------T-----PPVPNEVLTKSFR  207 (240)
Q Consensus       176 ~~-------s~~Pg~~~----------------------------~~~~lf--~s------~-----~~~p~~vla~af~  207 (240)
                      =.       ..+|....                            ++..+.  ..      .     -.++.+-||+-+|
T Consensus       100 ~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lG  179 (211)
T PRK11753        100 SYKKFRQLIQVNPDILMALSAQMARRLQNTSRKVGDLAFLDVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRIVG  179 (211)
T ss_pred             cHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHHhC
Confidence            11       13442210                            011111  00      0     0477799999999


Q ss_pred             CCHHHHHHHHhhcCCCceEEecCC
Q 045405          208 VGDDVINTIRAARAQSSWINILDG  231 (240)
Q Consensus       208 v~~~~v~~l~~~~~~~~~i~~~~~  231 (240)
                      ++.+++.++.+.....++|.+.++
T Consensus       180 ~tr~tvsR~l~~l~~~gii~~~~~  203 (211)
T PRK11753        180 CSREMVGRVLKMLEDQGLISAHGK  203 (211)
T ss_pred             CCHHHHHHHHHHHHHCCCEEecCC
Confidence            999999999998888888887654

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=92.33  E-value=0.11  Score=46.08  Aligned_cols=76  Identities=18%  Similarity=0.180  Sum_probs=43.5

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ++.-..+.|+.|---.+|+|+. .|-.|||+|++..+....   .-...|.+|-.+.-|....|... .++++++++.-.
T Consensus       170 ~~~gll~kLPagf~g~i~~h~~-~eraVvI~G~~~~~~~~~---~~~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIRt  244 (251)
T PF14499_consen  170 QYTGLLLKLPAGFTGRIHTHAS-NERAVVISGELDYQSYGA---SNFGTLDPGSYFGSPGHITHGIF-ITEDECVLYIRT  244 (251)
T ss_dssp             EE-EEEEE-SSEE--SEEE--S--EEEEEEEEEEEETTEEE---ETTEEEEE-TT-EE--E-------EESS-EEEEEEE
T ss_pred             ceeeEEEEcCCCCcCceeccCC-ceEEEEEEeEEEEeeccc---CCCccccCCcccccCCccccccc-ccCCCEEEEEEE
Confidence            3445667777777789999965 899999999998854321   11468999999999999999998 677888887654


Q ss_pred             e
Q 045405          177 N  177 (240)
Q Consensus       177 ~  177 (240)
                      +
T Consensus       245 d  245 (251)
T PF14499_consen  245 D  245 (251)
T ss_dssp             S
T ss_pred             C
Confidence            4

>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine

Probab=92.11  E-value=0.83  Score=39.27  Aligned_cols=85  Identities=20%  Similarity=0.237  Sum_probs=61.3

Q ss_pred             CCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC----------eEEEE-------EECCCC-EEEe
Q 045405           93 VNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN----------TFFSK-------VLTPGK-VFLI  154 (240)
Q Consensus        93 l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g----------~~~~~-------~l~~GD-v~v~  154 (240)
                      .++..+++...-|+||+.+|+|=||+-+-+.-|+.|++.+.-.|--.          +....       .-.+++ .+.-
T Consensus        39 yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~  118 (200)
T PF07847_consen   39 YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLY  118 (200)
T ss_pred             EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEc
Confidence            34446888888999999999999999888889999999987654211          01011       123334 3444


Q ss_pred             CCC--CeEEEEecCCCCEEEEEEEeC
Q 045405          155 PRA--LVHFQLNVGNEPATFIPIFNT  178 (240)
Q Consensus       155 P~G--~~H~~~N~G~~~a~~i~~~~s  178 (240)
                      |+.  -+|.+.+.+ +++.++-++.-
T Consensus       119 P~~ggNiH~f~a~~-~p~AflDIL~P  143 (200)
T PF07847_consen  119 PTSGGNIHEFTALT-GPCAFLDILAP  143 (200)
T ss_pred             cCCCCeeEEEEeCC-CCeEEEEEccC
Confidence            654  899999977 88998888864

Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process

>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.01  E-value=2.2  Score=39.81  Aligned_cols=70  Identities=17%  Similarity=0.167  Sum_probs=48.2

Q ss_pred             ceEEEEEEEcCCccc-CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           97 GVALFRIDLDVGGIN-PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        97 gls~~~v~l~pGg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      |+.+....+.. ++. ..-+..+.+|++|+.+|++++.-.  -|   ..++++||+.+||+|......-.+.+ +..+
T Consensus       124 g~~i~~y~~n~-sm~~~~f~NADge~Livpq~G~l~l~te--~G---~l~v~pgeiavIPRG~~frve~~~~~-~rgy  194 (427)
T COG3508         124 GVAIHVYKVNE-SMTKRFFRNADGELLIVPQQGELRLKTE--LG---VLEVEPGEIAVIPRGTTFRVELKDGE-ARGY  194 (427)
T ss_pred             ceEEEEEEccc-cchhhhhhcCCCCEEEEeecceEEEEEe--ec---eEEecCCcEEEeeCCceEEEEecCCc-eEEE
Confidence            44444333333 343 455677889999999999987643  24   46899999999999999887664433 4443

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=91.92  E-value=0.52  Score=35.82  Aligned_cols=68  Identities=21%  Similarity=0.172  Sum_probs=42.9

Q ss_pred             EEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405          101 FRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus       101 ~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ..++++||+.......+..+-++||++|++.+.     +.  ...+.+|+++++..|..-.+.+.+ +.+.++.+-
T Consensus         2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-----~~--~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~   69 (104)
T PF05726_consen    2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-----GE--EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLG   69 (104)
T ss_dssp             EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-----TT--TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEE
T ss_pred             EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-----CC--cceECCCcEEEECCCceEEEEECC-CCcEEEEEE
Confidence            467889988643222234468999999997653     32  147899999999977665666543 677766433

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=91.91  E-value=0.3  Score=36.81  Aligned_cols=29  Identities=28%  Similarity=0.568  Sum_probs=21.3

Q ss_pred             eEEEEEECCCCEEEeCCCCeEEEEecCCC
Q 045405          140 TFFSKVLTPGKVFLIPRALVHFQLNVGNE  168 (240)
Q Consensus       140 ~~~~~~l~~GDv~v~P~G~~H~~~N~G~~  168 (240)
                      +.+..+-++||.+++|+|..|+..|.|..
T Consensus        79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~  107 (114)
T PF02373_consen   79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDN  107 (114)
T ss_dssp             --EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred             ccccceECCCCEEEECCCceEEEEeCCce
Confidence            34567889999999999999999999864

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]

Probab=91.30  E-value=0.35  Score=41.90  Aligned_cols=56  Identities=16%  Similarity=0.256  Sum_probs=45.4

Q ss_pred             CCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEe
Q 045405          107 VGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLN  164 (240)
Q Consensus       107 pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N  164 (240)
                      |+.-.--|..+. +|++|-.+|...+-+++. |+.....+++||++.+|+.++|.-+-
T Consensus        42 PN~RkdyHieeg-eE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqR   97 (279)
T KOG3995|consen   42 PNTRKDYHIEEG-EEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQR   97 (279)
T ss_pred             CCcccccccCCc-chhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhh
Confidence            333344577764 999999999999999976 66668899999999999999997543

>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]

Probab=90.06  E-value=2  Score=36.71  Aligned_cols=65  Identities=26%  Similarity=0.329  Sum_probs=43.2

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEee-CEEEEEEEccC----------------CeEE------EEEECCCCEEEeCCCC
Q 045405          102 RIDLDVGGINPPHTHPRGTEAGIVTR-GTVLVGLVTTN----------------NTFF------SKVLTPGKVFLIPRAL  158 (240)
Q Consensus       102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~-G~~~v~~v~~~----------------g~~~------~~~l~~GDv~v~P~G~  158 (240)
                      .+.+.||++.|.|.|++-.|=++=-. |++++.....+                |+..      ...|++|+.+.+|+|.
T Consensus        90 iM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg~  169 (225)
T COG3822          90 IMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPGL  169 (225)
T ss_pred             eEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCCc
Confidence            56778999999999986655443222 23333332211                1111      3589999999999999


Q ss_pred             eEEEEecC
Q 045405          159 VHFQLNVG  166 (240)
Q Consensus       159 ~H~~~N~G  166 (240)
                      .|++..-+
T Consensus       170 ~HsFwae~  177 (225)
T COG3822         170 YHSFWAEE  177 (225)
T ss_pred             eeeeeecC
Confidence            99988743

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=89.65  E-value=2.1  Score=40.41  Aligned_cols=59  Identities=14%  Similarity=0.116  Sum_probs=42.4

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQL  163 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~  163 (240)
                      .+.+.++++..+...   ......++++|++|++++..   ++.  +..+++|+++++|++......
T Consensus       320 ~F~~~~~~l~~~~~~---~~~~~~~Illv~~G~~~i~~---~~~--~~~l~~G~~~fipa~~~~~~~  378 (389)
T PRK15131        320 DFAFSLHDLSDQPTT---LSQQSAAILFCVEGEAVLWK---GEQ--QLTLKPGESAFIAANESPVTV  378 (389)
T ss_pred             CcEEEEEEECCceEE---ecCCCcEEEEEEcceEEEEe---CCe--EEEECCCCEEEEeCCCccEEE
Confidence            466777777654222   22245799999999998853   344  468999999999998876655

>COG2850 Uncharacterized conserved protein [Function unknown]

Probab=89.26  E-value=0.78  Score=42.81  Aligned_cols=61  Identities=25%  Similarity=0.307  Sum_probs=42.2

Q ss_pred             EEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC--eE---------------EEEEECCCCEEEeCCCCeEEEEec
Q 045405          104 DLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN--TF---------------FSKVLTPGKVFLIPRALVHFQLNV  165 (240)
Q Consensus       104 ~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g--~~---------------~~~~l~~GDv~v~P~G~~H~~~N~  165 (240)
                      ...+||.+.+||-+. +-+++=..|+=|..+....+  +.               ...++.+||+.++|+|+.|+-...
T Consensus       125 ~a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae  202 (383)
T COG2850         125 FAAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE  202 (383)
T ss_pred             EecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence            678899999999865 55444444544555432211  10               136899999999999999998765

>PF14525 AraC_binding_2: AraC-binding-like domain

Probab=88.62  E-value=6.5  Score=31.10  Aligned_cols=65  Identities=14%  Similarity=0.046  Sum_probs=41.0

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405           98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus        98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~  167 (240)
                      +.+.++.....-.+...-+.+.--+.+.++|+..+..   +++  ...+.+||+++++.+.++.+...++
T Consensus        34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~---~g~--~~~~~pg~~~l~d~~~~~~~~~~~~   98 (172)
T PF14525_consen   34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQ---GGR--EVELAPGDVVLLDPGQPYRLEFSAG   98 (172)
T ss_pred             EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEE---CCE--EEEEcCCeEEEEcCCCCEEEEECCC
Confidence            4555555553332211112233445567778887765   355  6799999999999999988765543

>PRK10579 hypothetical protein; Provisional

Probab=88.57  E-value=7.5  Score=29.45  Aligned_cols=49  Identities=20%  Similarity=0.112  Sum_probs=39.3

Q ss_pred             ccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405          114 HTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV  165 (240)
Q Consensus       114 H~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~  165 (240)
                      +.-..+.|+.-|++|++++.+-   |...++.+++|+.|-+|++...-++..
T Consensus        36 ~F~T~~~E~MeivsG~l~V~Lp---g~~ew~~~~aG~sF~VpanssF~l~v~   84 (94)
T PRK10579         36 TFSTAEPEEMTVISGALNVLLP---GATDWQVYEAGEVFNVPGHSEFHLQVA   84 (94)
T ss_pred             EEcCCCcEEEEEEeeEEEEECC---CCcccEEeCCCCEEEECCCCeEEEEEC
Confidence            3445579999999999999884   433478999999999999988776653

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=88.49  E-value=3.9  Score=31.00  Aligned_cols=63  Identities=17%  Similarity=0.098  Sum_probs=40.3

Q ss_pred             EEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405          104 DLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus       104 ~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      .+.||-   -+....+.|+.-|++|++.+.+-   |...++.+++|+.|.+|++.-.-++..  ++...++
T Consensus        29 Vm~pGe---Y~F~T~~~E~M~vvsG~l~V~lp---g~~ew~~~~aGesF~VpanssF~v~v~--~~~~Y~C   91 (94)
T PF06865_consen   29 VMLPGE---YTFGTSAPERMEVVSGELEVKLP---GEDEWQTYSAGESFEVPANSSFDVKVK--EPTAYLC   91 (94)
T ss_dssp             EE-SEC---EEEEESS-EEEEEEESEEEEEET---T-SS-EEEETT-EEEE-TTEEEEEEES--S-EEEEE
T ss_pred             EEeeeE---EEEcCCCCEEEEEEEeEEEEEcC---CCcccEEeCCCCeEEECCCCeEEEEEC--cceeeEE
Confidence            345554   23444578999999999999984   333378999999999999988777653  3444444

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria

Probab=88.39  E-value=2.1  Score=29.79  Aligned_cols=57  Identities=14%  Similarity=0.012  Sum_probs=41.9

Q ss_pred             EEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEe
Q 045405          103 IDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLN  164 (240)
Q Consensus       103 v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N  164 (240)
                      ..|.||.....+-.  +...+-|.+|++-++..   |....+.|++||.+.+++|..-++..
T Consensus         2 ~~L~~g~~~~lr~~--~~~~l~v~~G~vWlT~~---g~~~D~~L~~G~~l~l~~g~~vvl~a   58 (63)
T PF11142_consen    2 FELAPGETLSLRAA--AGQRLRVESGRVWLTRE---GDPDDYWLQAGDSLRLRRGGRVVLSA   58 (63)
T ss_pred             EEeCCCceEEeEcC--CCcEEEEccccEEEECC---CCCCCEEECCCCEEEeCCCCEEEEEe
Confidence            35667776655533  45559999999988763   44447899999999999998766654

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=87.70  E-value=5.2  Score=36.08  Aligned_cols=82  Identities=20%  Similarity=0.193  Sum_probs=51.6

Q ss_pred             ceEEEEEEEcCCc-c--cCCccCCCCCeEEEEee---CEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCE
Q 045405           97 GVALFRIDLDVGG-I--NPPHTHPRGTEAGIVTR---GTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPA  170 (240)
Q Consensus        97 gls~~~v~l~pGg-~--~~pH~Hp~a~Ei~yVl~---G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a  170 (240)
                      .+-+....+.||+ .  .|||.|++..|..|-.+   +.-..++..+-++.....++-+|+++.|+=.+|.-.  |...-
T Consensus       174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~--gt~~y  251 (276)
T PRK00924        174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGV--GTSNY  251 (276)
T ss_pred             cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCc--Ccccc
Confidence            5777777889999 3  69999997777554221   211112111112222478999999999999999853  55555


Q ss_pred             EEEEEEeCCC
Q 045405          171 TFIPIFNTQN  180 (240)
Q Consensus       171 ~~i~~~~s~~  180 (240)
                      .||...--+|
T Consensus       252 ~fiw~m~gen  261 (276)
T PRK00924        252 TFIWGMAGEN  261 (276)
T ss_pred             EEEEEecccC
Confidence            5665554444

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=87.60  E-value=4.8  Score=36.40  Aligned_cols=59  Identities=17%  Similarity=0.213  Sum_probs=42.8

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQL  163 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~  163 (240)
                      .+++.++++......  ..+ +...+++|++|++++..   ++.  +..+++|+.+++|++...+..
T Consensus       234 ~F~~~~~~~~~~~~~--~~~-~~~~il~v~~G~~~i~~---~~~--~~~l~~G~~~~ipa~~~~~~i  292 (302)
T TIGR00218       234 YFSVYKWDISGKAEF--IQQ-QSALILSVLEGSGRIKS---GGK--TLPLKKGESFFIPAHLGPFTI  292 (302)
T ss_pred             CeEEEEEEeCCceee--ccC-CCcEEEEEEcceEEEEE---CCE--EEEEecccEEEEccCCccEEE
Confidence            577788887654211  123 46789999999998864   244  578999999999999866654

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>PLN02288 mannose-6-phosphate isomerase

Probab=86.99  E-value=2.1  Score=40.45  Aligned_cols=58  Identities=16%  Similarity=0.164  Sum_probs=40.8

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCC
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRAL  158 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~  158 (240)
                      .+++.++++.+|.......+ +..++++|++|++++..  . +......+++|+++++|++.
T Consensus       333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~--~-~~~~~~~l~~G~~~fv~a~~  390 (394)
T PLN02288        333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLST--G-SSEDGTAAKRGDVFFVPAGT  390 (394)
T ss_pred             ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEec--C-CccceEEEeceeEEEEeCCC
Confidence            57888888888753222213 45899999999998853  2 22113569999999999874

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=85.99  E-value=6.2  Score=29.04  Aligned_cols=60  Identities=10%  Similarity=-0.030  Sum_probs=41.9

Q ss_pred             CcccCCccC-CCCCeEEEEeeCEEEEEEEccCCe--EEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405          108 GGINPPHTH-PRGTEAGIVTRGTVLVGLVTTNNT--FFSKVLTPGKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus       108 Gg~~~pH~H-p~a~Ei~yVl~G~~~v~~v~~~g~--~~~~~l~~GDv~v~P~G~~H~~~N~G~  167 (240)
                      -++...|.- .+.-..+-|++|++.+...+++|.  .....+++|+..++++...|.+.-.++
T Consensus        13 ~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~   75 (82)
T PF09313_consen   13 AALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD   75 (82)
T ss_dssp             GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred             HHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence            344555543 222345689999999999987652  125678999999999999999988765

; PDB: 3BB6_C 3M70_A 3DL3_I.

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=85.71  E-value=4.2  Score=38.09  Aligned_cols=76  Identities=16%  Similarity=0.209  Sum_probs=53.0

Q ss_pred             CCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCC
Q 045405           90 FPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEP  169 (240)
Q Consensus        90 ~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~  169 (240)
                      .|...  .+.+.+++++.|.....-.- +..-++.|++|++++.-..  +.  ...+++|||++||+...-.+.. .+++
T Consensus       327 ~Ppi~--eF~v~~~~v~~g~~~~~~~~-~~~SIllv~~G~g~l~~~t--~~--~~~v~rG~V~fI~a~~~i~~~~-~sd~  398 (411)
T KOG2757|consen  327 DPPIE--EFAVLETKVPTGESYKFPGV-DGPSILLVLKGSGILKTDT--DS--KILVNRGDVLFIPANHPIHLSS-SSDP  398 (411)
T ss_pred             CCCCc--ceeEEEeecCCCceEEeecC-CCceEEEEEecceEEecCC--CC--ceeeccCcEEEEcCCCCceeec-cCcc
Confidence            45555  67888999999775333333 4589999999999887532  33  5789999999999998654433 3444


Q ss_pred             EEEE
Q 045405          170 ATFI  173 (240)
Q Consensus       170 a~~i  173 (240)
                      ...+
T Consensus       399 ~~~y  402 (411)
T KOG2757|consen  399 FLGY  402 (411)
T ss_pred             eeee
Confidence            4443

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=85.52  E-value=2.9  Score=29.23  Aligned_cols=48  Identities=19%  Similarity=0.239  Sum_probs=33.9

Q ss_pred             EEEcCCccc-CCccCCCCCeEEEEeeCEEEEEEEccCCeE-EEEEECCCCEE
Q 045405          103 IDLDVGGIN-PPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTPGKVF  152 (240)
Q Consensus       103 v~l~pGg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~GDv~  152 (240)
                      .++++|..+ ...-  ....+++|++|.+.+...+.+++. ....+.+||++
T Consensus         2 ~~~~~g~~i~~~g~--~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~   51 (91)
T PF00027_consen    2 KTYKKGEVIYRQGD--PCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF   51 (91)
T ss_dssp             EEESTTEEEEETTS--BESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred             eEECCCCEEEeCCC--cCCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence            355666643 3332  358999999999999998887763 25677788776

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes

Probab=84.41  E-value=20  Score=28.93  Aligned_cols=84  Identities=14%  Similarity=0.161  Sum_probs=55.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeC-EEEEEEEccCCeEEEEEE----CCC--CEEEeCCCCeEEEEecCCCC
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRG-TVLVGLVTTNNTFFSKVL----TPG--KVFLIPRALVHFQLNVGNEP  169 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G-~~~v~~v~~~g~~~~~~l----~~G--Dv~v~P~G~~H~~~N~G~~~  169 (240)
                      ..+....-|.++.....|-- +++|+.+...| .+++.+++++|+....+|    .+|  =.++||+|......-.+...
T Consensus        40 ~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~  118 (139)
T PF06172_consen   40 ASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGD  118 (139)
T ss_dssp             S-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSS
T ss_pred             cceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCC
Confidence            35666666888777755544 78999999998 688999999887666566    344  35789999877765445555


Q ss_pred             EEEEEEEeCCCCCc
Q 045405          170 ATFIPIFNTQNPGV  183 (240)
Q Consensus       170 a~~i~~~~s~~Pg~  183 (240)
                      ..+++..  -.||+
T Consensus       119 y~Lvsc~--VaPGF  130 (139)
T PF06172_consen  119 YSLVSCT--VAPGF  130 (139)
T ss_dssp             EEEEEEE--ESSC-
T ss_pred             EEEEEEE--EcCCC
Confidence            5555433  34554

; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=82.59  E-value=5.4  Score=32.91  Aligned_cols=126  Identities=11%  Similarity=0.058  Sum_probs=74.7

Q ss_pred             EEEEcCCcccCCccCC-CCCeEEEEeeCEEEEEEEccCCeE-EEEEECCCCEEEeCC----CCeEEEEecCCCCEEEEEE
Q 045405          102 RIDLDVGGINPPHTHP-RGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTPGKVFLIPR----ALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus       102 ~v~l~pGg~~~pH~Hp-~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~GDv~v~P~----G~~H~~~N~G~~~a~~i~~  175 (240)
                      ...+++|..+-----+ ....+++|++|.+++...+++|+. ....+.+||++=.+.    ...+....  .+++.++.+
T Consensus         8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~~~~~~~~~A--~~~~~v~~i   85 (202)
T PRK13918          8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAGAERAYFAEA--VTDSRIDVL   85 (202)
T ss_pred             eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcCCCCCceEEE--cCceEEEEE
Confidence            4567777654221111 246899999999999999888864 345669999875431    11122222  234444332


Q ss_pred             EeCC--CCCc----------------------------eeccchhh------c----C----CCCCCHHHHHhhcCCCHH
Q 045405          176 FNTQ--NPGV----------------------------SDSIGTLF------D----T----TPPVPNEVLTKSFRVGDD  211 (240)
Q Consensus       176 ~~s~--~Pg~----------------------------~~~~~~lf------~----s----~~~~p~~vla~af~v~~~  211 (240)
                       +.+  +|..                            ..++..+.      +    .    ...++.+-+|...|++.+
T Consensus        86 -~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~~~~~t~~~iA~~lG~tre  164 (202)
T PRK13918         86 -NPALMSAEDNLVLTQHLVRTLARAYESIYRLVGQRLKNRIAAALLELSDTPLATQEDSGETMIYATHDELAAAVGSVRE  164 (202)
T ss_pred             -EHHHcChhhHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCCCCCCeEEecCCHHHHHHHhCccHH
Confidence             211  1210                            00111110      0    0    014789999999999999


Q ss_pred             HHHHHHhhcCCCceEEecC
Q 045405          212 VINTIRAARAQSSWINILD  230 (240)
Q Consensus       212 ~v~~l~~~~~~~~~i~~~~  230 (240)
                      ++.++.+.+...+.|...+
T Consensus       165 tvsR~l~~l~~~g~I~~~~  183 (202)
T PRK13918        165 TVTKVIGELSREGYIRSGY  183 (202)
T ss_pred             HHHHHHHHHHHCCCEEcCC
Confidence            9999999888888887543

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=82.37  E-value=15  Score=31.13  Aligned_cols=126  Identities=9%  Similarity=0.046  Sum_probs=75.2

Q ss_pred             EEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeE-EEEEECCCCEEEeCC----CCeEEEEecCCCCEEEEEEEe
Q 045405          103 IDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTPGKVFLIPR----ALVHFQLNVGNEPATFIPIFN  177 (240)
Q Consensus       103 v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~GDv~v~P~----G~~H~~~N~G~~~a~~i~~~~  177 (240)
                      ..+++|..+-. --.....+++|++|.+++...+++|+. ....+.+||++-.+.    ...+.....  ++.+++. +.
T Consensus        40 ~~~~kge~l~~-~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~~~~~~~~~~~a~--~~~~i~~-ip  115 (235)
T PRK11161         40 KPIQKGQTLFK-AGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSGQHPSFAQAL--ETSMVCE-IP  115 (235)
T ss_pred             eeecCCCEeEC-CCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccccCCCCcceEEEe--ccEEEEE-EE
Confidence            35666664322 223457899999999999998887754 334558999985432    111222222  3333332 22


Q ss_pred             C--------CCCCce----------------------------eccchh------hcC--------CCCCCHHHHHhhcC
Q 045405          178 T--------QNPGVS----------------------------DSIGTL------FDT--------TPPVPNEVLTKSFR  207 (240)
Q Consensus       178 s--------~~Pg~~----------------------------~~~~~l------f~s--------~~~~p~~vla~af~  207 (240)
                      .        .+|.+-                            .+...+      ++.        ...++.+-+|...|
T Consensus       116 ~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~lt~~~iA~~lG  195 (235)
T PRK11161        116 FETLDDLSGKMPKLRQQIMRLMSGEIKGDQEMILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLG  195 (235)
T ss_pred             HHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCceeEccccHHHHHHHhC
Confidence            1        233210                            011111      110        01478899999999


Q ss_pred             CCHHHHHHHHhhcCCCceEEecCCe
Q 045405          208 VGDDVINTIRAARAQSSWINILDGR  232 (240)
Q Consensus       208 v~~~~v~~l~~~~~~~~~i~~~~~~  232 (240)
                      ++.+.+.++.+++...+.|...+++
T Consensus       196 ~sr~tvsR~l~~l~~~g~I~~~~~~  220 (235)
T PRK11161        196 LTVETISRLLGRFQKSGMLAVKGKY  220 (235)
T ss_pred             CcHHHHHHHHHHHHHCCCEEecCCE
Confidence            9999999999998888888877753

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=82.21  E-value=25  Score=31.37  Aligned_cols=96  Identities=22%  Similarity=0.221  Sum_probs=49.7

Q ss_pred             ceEEEecccCCCCCCccceEEEEEEEcCCc---ccCCccCCCC--------CeEEEEe-e---CEEEEEEEccCC-eEEE
Q 045405           80 RAVTFGDVFGFPAVNTQGVALFRIDLDVGG---INPPHTHPRG--------TEAGIVT-R---GTVLVGLVTTNN-TFFS  143 (240)
Q Consensus        80 ~~v~~~~~~~~P~l~~~gls~~~v~l~pGg---~~~pH~Hp~a--------~Ei~yVl-~---G~~~v~~v~~~g-~~~~  143 (240)
                      ..+......+.+.-.  .|-+..+. .|+|   ..|||.|++.        +|+.|-. +   |-+.-.+.+.+. ....
T Consensus       135 R~V~~~i~~~~~~~~--~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~  211 (261)
T PF04962_consen  135 RTVRNIIDPNVPPAS--RLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEH  211 (261)
T ss_dssp             EEEEEEESTTT---S--S-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEE
T ss_pred             EEEEEeeCCCCcccc--eEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEE
Confidence            455555555554222  46666666 6655   3699999763        4555442 2   434322332222 1236


Q ss_pred             EEECCCCEEEeCCCCeEEEEe-cCCCCEEEEEEEeCCC
Q 045405          144 KVLTPGKVFLIPRALVHFQLN-VGNEPATFIPIFNTQN  180 (240)
Q Consensus       144 ~~l~~GDv~v~P~G~~H~~~N-~G~~~a~~i~~~~s~~  180 (240)
                      ..++-||++.+|+|. |-+.. .| ....++-++-..+
T Consensus       212 ~~V~~~d~V~iP~gy-Hp~~aapG-y~~Yylw~maG~~  247 (261)
T PF04962_consen  212 YVVRNGDAVLIPSGY-HPVVAAPG-YDMYYLWVMAGEN  247 (261)
T ss_dssp             EEEETTEEEEESTTB--SEEEEEE-SSEEEEEEEESSS
T ss_pred             EEEECCCEEEeCCCC-CCcCcCCC-cCcEEEEEEEcCC
Confidence            789999999999993 33322 33 3445666665555

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
2et7_A	201	Structural And Spectroscopic Insights Into The Mech		1e-32
2ete_A	201	Recombinant Oxalate Oxidase In Complex With Glycola		2e-32
1fi2_A	201	Crystal Structure Of Germin (Oxalate Oxidase) Lengt		4e-32

>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism Of Oxalate Oxidase Length = 201

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 104/201 (51%), Gaps = 5/201 (2%)
Query: 29  SDPDPLQDVCIADLNA-TISINGFPCKPASNVXXXXXXXXXXXXXXXXXV-FKRAVTFGD 86
           SDPDPLQD C+ADL+   +S+NG  CKP S                        AVT  D
Sbjct: 1   SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 87  VFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIXXXXXXXXX---XXXXXXXFFS 143
           V  +P  NT GV++ R+D   GG NPPH HPR TE G+                    +S
Sbjct: 61  VAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 144 KVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLT 203
           +V+  G+ F+IPR L+HFQ NVG   A  +  FN+QNPG+     TLF + PP+P  VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 204 KSFRVGDDVINTIRAARAQSS 224
           K+ RV   V+  +++  A  S
Sbjct: 181 KALRVEAGVVELLKSKFAGGS 201

>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate Length = 201

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 104/201 (51%), Gaps = 5/201 (2%)
Query: 29  SDPDPLQDVCIADLNA-TISINGFPCKPASNVXXXXXXXXXXXXXXXXXV-FKRAVTFGD 86
           SDPDPLQD C+ADL+   +S+NG  CKP S                        AVT  D
Sbjct: 1   SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 87  VFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIXXXXXXXXX---XXXXXXXFFS 143
           V  +P  NT GV++ R+D   GG NPPH HPR TE G+                    +S
Sbjct: 61  VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 144 KVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLT 203
           +V+  G+ F+IPR L+HFQ NVG   A  +  FN+QNPG+     TLF + PP+P  VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 204 KSFRVGDDVINTIRAARAQSS 224
           K+ RV   V+  +++  A  S
Sbjct: 181 KALRVEAGVVELLKSKFAGGS 201

>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase) Length = 201

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/201 (38%), Positives = 104/201 (51%), Gaps = 5/201 (2%)
Query: 29  SDPDPLQDVCIADLNA-TISINGFPCKPASNVXXXXXXXXXXXXXXXXXV-FKRAVTFGD 86
           +DPDPLQD C+ADL+   +S+NG  CKP S                        AVT  D
Sbjct: 1   TDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 87  VFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIXXXXXXXXX---XXXXXXXFFS 143
           V  +P  NT GV++ R+D   GG NPPH HPR TE G+                    +S
Sbjct: 61  VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 144 KVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLT 203
           +V+  G+ F+IPR L+HFQ NVG   A  +  FN+QNPG+     TLF + PP+P  VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 204 KSFRVGDDVINTIRAARAQSS 224
           K+ RV   V+  +++  A  S
Sbjct: 181 KALRVEAGVVELLKSKFAGGS 201

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	3e-54
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	1e-33
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	2e-33
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	9e-04
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	6e-33
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	3e-30
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	1e-27
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	1e-28
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	1e-28
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	5e-04
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	6e-28
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	7e-20
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	8e-27
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	2e-26
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	5e-26
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	3e-08
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	9e-26
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	3e-09
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	1e-25
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	3e-08
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	1e-15
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	4e-08
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	2e-13
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	4e-13
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	1e-09
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	3e-09
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	4e-09
1v70_A	105	Probable antibiotics synthesis protein; structural	7e-09
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	2e-08
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	5e-08
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	6e-08
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	1e-07
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	1e-06
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	1e-06
3h8u_A	125	Uncharacterized conserved protein with double-STR	3e-06
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	3e-06
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	4e-06
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	5e-06
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	9e-06
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	5e-06
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	2e-05
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	5e-05
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	1e-04
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	3e-04
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	4e-04
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	7e-04

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Length = 201

 Score =  172 bits (436), Expect = 3e-54
 Identities = 87/201 (43%), Positives = 119/201 (59%), Gaps = 5/201 (2%)

Query: 29  SDPDPLQDVCIADLNA-TISINGFPCKPASNVTSDDFFTDFSKDP-TTFDVFKRAVTFGD 86
           +DPDPLQD C+ADL+   +S+NG  CKP S    D  F+        T      AVT  D
Sbjct: 1   TDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60

Query: 87  VFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVT---TNNTFFS 143
           V  +P  NT GV++ R+D   GG NPPH HPR TE G+V +G +LVG++    + N  +S
Sbjct: 61  VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120

Query: 144 KVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLT 203
           +V+  G+ F+IPR L+HFQ NVG   A  +  FN+QNPG+     TLF + PP+P  VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180

Query: 204 KSFRVGDDVINTIRAARAQSS 224
           K+ RV   V+  +++  A  S
Sbjct: 181 KALRVEAGVVELLKSKFAGGS 201

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Length = 510

 Score =  125 bits (315), Expect = 1e-33
 Identities = 22/160 (13%), Positives = 57/160 (35%), Gaps = 7/160 (4%)

Query: 67  DFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVT 126
             ++ P  ++    ++   +      +   G++    +L    +  PH +          
Sbjct: 341 GRNRSPDIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYAL 400

Query: 127 RGTVLVGLVTTN-NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSD 185
           RG   V +V +N N  + + L  G V ++P+       +  ++   ++       P +++
Sbjct: 401 RGRAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKS-QSDNFEYVAFKTDSRPSIAN 459

Query: 186 SIGT--LFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQS 223
             G   + D  P    EV+  S+ +  +    ++      
Sbjct: 460 LAGENSVIDNLPE---EVVANSYGLPREQARQLKNNNPFK 496

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A Length = 493

 Score = 39.2 bits (90), Expect = 9e-04
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 26/110 (23%)

Query: 97  GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN--NTFFS----------- 143
           GV + +  L+  G++ P   P      IV +G   +G        TF             
Sbjct: 44  GVTVSKRTLNRNGLHLPSYSPYPQM-IIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSR 102

Query: 144 ------------KVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNP 181
                       +    G V +IP  + ++  N G+EP   I + +T N 
Sbjct: 103 SQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNF 152

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Length = 476

 Score =  123 bits (309), Expect = 6e-33
 Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 7/163 (4%)

Query: 64  FFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAG 123
                +  P  ++    +VT      FPA++   ++     L    +  PH +       
Sbjct: 304 HNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSII 363

Query: 124 IVTRGTVLVGLVTTN-NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPG 182
               G  L+ +V  N    F   L  G+V ++P+  V    +  ++   ++       P 
Sbjct: 364 YALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARS-QSDNFEYVSFKTNDTPM 422

Query: 183 VSDSIGT--LFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQS 223
           +    G   L +  P    EV+  +F +       I+      
Sbjct: 423 IGTLAGANSLLNALPE---EVIQHTFNLKSQQARQIKNNNPFK 462

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score =  114 bits (286), Expect = 3e-30
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 7/171 (4%)

Query: 51  FPCKPASNVTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGI 110
            P    + +          + P         +       FP       A   I L+ G +
Sbjct: 190 TPQGQTAKIEVPHTHNLLGQQPLVSLGGNE-LRLASAKEFPGSFNMTGA--LIHLEPGAM 246

Query: 111 NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPA 170
              H HP   E   V  G + + +  +        L  G V  +P+   H   N   +P 
Sbjct: 247 RQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGYVPKGYGHAIRNSSQKPL 306

Query: 171 TFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARA 221
             + +FN  +    D    L       P+ VL  +F++  ++   +     
Sbjct: 307 DIVVVFNDGDYQSIDLSTWLASN----PSSVLGNTFQISPELTKKLPVQDT 353

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score =  107 bits (267), Expect = 1e-27
 Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 3/139 (2%)

Query: 82  VTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF 141
                 + FP     G+A   + L+ G I   H H    E   V  G   + L +     
Sbjct: 38  TKQVGTYNFPVSK--GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKV 95

Query: 142 FSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEV 201
               +  G ++  PR   H    +G + A F+ +FN        +   + D     P   
Sbjct: 96  EIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGTFSEGATFS-VTDWLSHTPIAW 154

Query: 202 LTKSFRVGDDVINTIRAAR 220
           + ++       +  +   +
Sbjct: 155 VEENLGWTAAQVAQLPKKQ 173

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Length = 496

 Score =  111 bits (279), Expect = 1e-28
 Identities = 20/159 (12%), Positives = 53/159 (33%), Gaps = 10/159 (6%)

Query: 71  DPTTFDVFKRA---VTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTR 127
             ++ D++      +        P +    ++     L    +  PH +          +
Sbjct: 328 PSSSPDIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALK 387

Query: 128 GTVLVGLVTTN-NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDS 186
           G   + +V  N NT F   L  G+   +P+          ++  +++        G++  
Sbjct: 388 GRARLQVVNCNGNTVFDGELEAGRALTVPQNYAVAA-KSLSDRFSYVAFKTNDRAGIARL 446

Query: 187 IGT--LFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQS 223
            GT  + +  P    +V+  +F +  +    +++     
Sbjct: 447 AGTSSVINNLPL---DVVAATFNLQRNEARQLKSNNPFK 482

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Length = 459

 Score =  111 bits (277), Expect = 1e-28
 Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 7/160 (4%)

Query: 67  DFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVT 126
             S+    F+     ++  +    P +    ++  R  L    +  PH           T
Sbjct: 291 GRSERADVFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYAT 350

Query: 127 RGTVLVGLVTTN-NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSD 185
           RG   V +V     + F   +  G+V +IP+  V  +    +    +I      N   + 
Sbjct: 351 RGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFVVIK-RASDRGFEWIAFKTNDNAITNL 409

Query: 186 SIGT--LFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQS 223
             G        P     VL+  +R+  +    ++  + + 
Sbjct: 410 LAGRVSQMRMLPL---GVLSNMYRISREEAQRLKYGQQEM 446

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Length = 459

 Score = 39.9 bits (92), Expect = 5e-04
 Identities = 25/171 (14%), Positives = 49/171 (28%), Gaps = 26/171 (15%)

Query: 91  PAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLV--TTNNTFFSKV--- 145
                 GV + R  +   G+  P       +   V +G  + G+       T+ + +   
Sbjct: 56  DEFQCAGVNMIRHTIRPKGLLLPGFSN-APKLIFVAQGFGIRGIAIPGCAETYQTDLRRS 114

Query: 146 ----------------LTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGT 189
                              G + ++P  + H+  N G      I   +T+N         
Sbjct: 115 QSAGSAFKDQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYL 174

Query: 190 LFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWINILDGRSISFMSHN 240
                   P +V     R  ++   + R   +     NI  G +  F+   
Sbjct: 175 RKFYLAGRPEQV----ERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEA 221

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score =  108 bits (271), Expect = 6e-28
 Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 6/170 (3%)

Query: 52  PCKPASNVTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGIN 111
                 N      FT    +    +     V   D   F    T  +A   + ++ G + 
Sbjct: 213 DIVEGPNGEVPYPFTYRLLEQEPIESEGGKVYIADSTNFKVSKT--IASALVTVEPGAMR 270

Query: 112 PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPAT 171
             H HP   E      G   + +  ++    +     G V  +P A+ H+  N+G+EP  
Sbjct: 271 ELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLV 330

Query: 172 FIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARA 221
           F+ IF   +         L       P   +     +G D  + +   + 
Sbjct: 331 FLEIFKDDHYADVSLNQWLAML----PETFVQAHLDLGKDFTDVLSKEKH 376

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 86.4 bits (213), Expect = 7e-20
 Identities = 33/163 (20%), Positives = 53/163 (32%), Gaps = 6/163 (3%)

Query: 60  TSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRG 119
           T  +    FS D               V   P      +A   + L  G I   H H   
Sbjct: 44  TVSNMKFSFS-DTHNRLEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEA 100

Query: 120 TEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQ 179
            E   +  G+  V +V      F   +  G ++  P  L H       E A F+ +F+  
Sbjct: 101 -EWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQA-LEEGAEFLLVFDDG 158

Query: 180 NPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQ 222
           +   + +   L D     P EV+  +F V  + I+ +      
Sbjct: 159 SFSENSTFQ-LTDWLAHTPKEVIAANFGVTKEEISNLPGKEKY 200

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Length = 466

 Score =  106 bits (265), Expect = 8e-27
 Identities = 27/167 (16%), Positives = 64/167 (38%), Gaps = 6/167 (3%)

Query: 65  FTDFSKDPTTFDVFKRA---VTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTE 121
            TD   DP+  DV+K     ++  + +  P +    ++  R  +    +  P  +     
Sbjct: 287 CTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANA 346

Query: 122 AGIVTRGTVLVGLVTTN-NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQN 180
              VT G   V +V  N +  F   ++ G++  IP+     +    +E   +I      N
Sbjct: 347 VLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVK-RATSEQFRWIEFKTNAN 405

Query: 181 PGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWIN 227
             ++   G        +P EV++  +++  +    ++    +++  +
Sbjct: 406 AQINTLAGR-TSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTH 451

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Length = 465

 Score =  105 bits (262), Expect = 2e-26
 Identities = 22/161 (13%), Positives = 61/161 (37%), Gaps = 10/161 (6%)

Query: 70  KDPTTFDVFKRA---VTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVT 126
            DP+  DV+      +T  + F  P +    ++  +  L    +  PH +          
Sbjct: 292 DDPSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCV 351

Query: 127 RGTVLVGLVTTN-NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSD 185
           RG   + +V     + F + L+ G++ ++P+     +     +   ++    ++N     
Sbjct: 352 RGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVK-QAFEDGFEWVSFKTSENAMFQS 410

Query: 186 SIGT--LFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSS 224
             G      + P    +V++  +++  +    ++  R +++
Sbjct: 411 LAGRTSAIRSLPI---DVVSNIYQISREEAFGLKFNRPETT 448

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score =  103 bits (258), Expect = 5e-26
 Identities = 22/149 (14%), Positives = 49/149 (32%), Gaps = 12/149 (8%)

Query: 86  DVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLV---------- 135
                  +    + L  + ++ G +  PH + R T   +   G   V LV          
Sbjct: 269 TPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGL 328

Query: 136 -TTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTT 194
            +     ++  L+ G + +IP +         +     I   N +N   +   G   +  
Sbjct: 329 ESMQLRRYAATLSEGDIIVIPSSFPVALKAASDLNMVGI-GVNAENNERNFLAGHKENVI 387

Query: 195 PPVPNEVLTKSFRVGDDVINTIRAARAQS 223
             +P +V   +F    + +  +   + +S
Sbjct: 388 RQIPRQVSDLTFPGSGEEVEELLENQKES 416

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score = 52.6 bits (125), Expect = 3e-08
 Identities = 23/171 (13%), Positives = 42/171 (24%), Gaps = 15/171 (8%)

Query: 80  RAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN 139
           R +   +       N +   +         +  PH H       +V  G  ++ LV  + 
Sbjct: 68  RLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDG 126

Query: 140 TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI----------FNTQNPGVSDSIGT 189
              +  L  G    I      + +N  N     I                    +  + +
Sbjct: 127 RD-TYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPS 185

Query: 190 LFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWINILDGRSISFMSHN 240
                       L  S+    D I        Q   I  +    I  +S +
Sbjct: 186 YLSAFSK---NFLEASYDSPYDEIEQTLLQEEQEGVIVKMPKDQIQEISKH 233

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Length = 434

 Score =  103 bits (256), Expect = 9e-26
 Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 15/176 (8%)

Query: 61  SDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGT 120
            D+ F   +  P   + F R          P +    V +  +D+  G +  PH   +  
Sbjct: 230 QDEPFNLRNSKPIYSNKFGRWYEM-TPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAI 288

Query: 121 EAGIVTRGTVLVGLVTTNNT-------------FFSKVLTPGKVFLIPRALVHFQLNVGN 167
              ++  G   + LV  ++               +   L+   VF+IP A         N
Sbjct: 289 VIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINATSN 348

Query: 168 EPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQS 223
                    N +N   +   G   +    +P EVL  SF      +  +   +++S
Sbjct: 349 LNFFAF-GINAENNRRNFLAGGKDNVMSEIPTEVLEVSFPASGKKVEKLIKKQSES 403

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Length = 434

 Score = 55.2 bits (132), Expect = 3e-09
 Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 15/154 (9%)

Query: 80  RAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN 139
           R +   D       N +   +         +  PH H       +V  GT ++ LV  ++
Sbjct: 43  RVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLVNPDS 101

Query: 140 TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI----------FNTQNPGVSDSIGT 189
              S +L  G    IP     F +N  +     I            F       +++  +
Sbjct: 102 RD-SYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQS 160

Query: 190 LFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQS 223
                      +L  SF      IN +     + 
Sbjct: 161 YLRGFSK---NILEASFDSDFKEINRVLFGEERQ 191

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score =  103 bits (256), Expect = 1e-25
 Identities = 26/174 (14%), Positives = 54/174 (31%), Gaps = 16/174 (9%)

Query: 64  FFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAG 123
            F   S++P   + F +          P +    + L  +D++ G +  PH + +     
Sbjct: 216 PFNLRSRNPIYSNNFGKFFEI-TPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVIL 274

Query: 124 IVTRGTVLVGLVTTNNT--------------FFSKVLTPGKVFLIPRALVHFQLNVGNEP 169
           ++  G   + LV                    +   L+   VF+IP A         N  
Sbjct: 275 VINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLN 334

Query: 170 ATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQS 223
                  N +N   +   G   +    +  +V   +F      +  +   + +S
Sbjct: 335 FLAF-GINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRES 387

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score = 52.5 bits (125), Expect = 3e-08
 Identities = 22/158 (13%), Positives = 45/158 (28%), Gaps = 15/158 (9%)

Query: 80  RAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN 139
           R +   +       N +   + +       I  PH H        V  G  ++ LV  ++
Sbjct: 31  RLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNNDD 89

Query: 140 TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI----------FNTQNPGVSDSIGT 189
              S  L PG    IP    ++ +N  +     +            ++      + +  +
Sbjct: 90  RD-SYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQS 148

Query: 190 LFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWIN 227
                      +L  SF    + IN +     +     
Sbjct: 149 YLQGFSH---NILETSFHSEFEEINRVLFGEEEEQRQQ 183

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Length = 418

 Score = 74.5 bits (182), Expect = 1e-15
 Identities = 24/199 (12%), Positives = 53/199 (26%), Gaps = 26/199 (13%)

Query: 50  GFPCKPASNVTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGG 109
                        +       +P   + F +          P +    + L  +++  G 
Sbjct: 215 VSKKGSEEEGDITNPINLREGEPDLSNNFGKLFEVKPDKKNPQLQDLDMMLTCVEIKEGA 274

Query: 110 INPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-------------------------FSK 144
           +  PH + +     +V +GT  + LV                               ++ 
Sbjct: 275 LMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNREVRRYTA 334

Query: 145 VLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTK 204
            L  G VF++P A                 I N +N       G   +    +  +    
Sbjct: 335 RLKEGDVFIMPAAHPVAINASSELHLLGFGI-NAENNHRIFLAGDKDNVIDQIEKQAKDL 393

Query: 205 SFRVGDDVINTIRAARAQS 223
           +F    + +  +   + +S
Sbjct: 394 AFPGSGEQVEKLIKNQKES 412

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Length = 418

 Score = 52.2 bits (124), Expect = 4e-08
 Identities = 23/151 (15%), Positives = 39/151 (25%), Gaps = 9/151 (5%)

Query: 80  RAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN 139
           R +   D       N Q   + +I+     +  P  H       ++ +G   V +    N
Sbjct: 26  RVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPK-HADADNILVIQQGQATVTVAN-GN 83

Query: 140 TFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQNPGVSDSIGTLFDTTPPV- 197
              S  L  G    IP   + + LN   N+      I    N            +     
Sbjct: 84  NRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFFPASSRDQSS 143

Query: 198 -----PNEVLTKSFRVGDDVINTIRAARAQS 223
                    L  +F    + I  +       
Sbjct: 144 YLQGFSRNTLEAAFNAEFNEIRRVLLEENAG 174

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Length = 531

 Score = 68.4 bits (166), Expect = 2e-13
 Identities = 28/161 (17%), Positives = 60/161 (37%), Gaps = 10/161 (6%)

Query: 70  KDPTTFDVFKRA---VTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVT 126
            +P   D+F      ++  +    P +    ++  R      GI  PH +        V 
Sbjct: 363 GNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVI 422

Query: 127 RGTVLVGLVTTN-NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSD 185
           RG   V +V  N +    + +  G++F++P+     Q   GN+   +      +N  ++ 
Sbjct: 423 RGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQ-QAGNQGFEYFAFKTEENAFINT 481

Query: 186 SIGT--LFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSS 224
             G        P    EVL  ++++  +    ++  R ++ 
Sbjct: 482 LAGRTSFLRALPD---EVLANAYQISREQARQLKYNRQETI 519

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Length = 397

 Score = 67.2 bits (163), Expect = 4e-13
 Identities = 32/186 (17%), Positives = 58/186 (31%), Gaps = 20/186 (10%)

Query: 50  GFPCKPASNVTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGG 109
               + + +  S    +   +D T  + F               N+  V +  I+++ G 
Sbjct: 198 EQIKELSKHAKSSSRKSLSKQDNTIGNEFGNLTE-------RTDNSLNVLISSIEMEEGA 250

Query: 110 INPPHTHPRGTEAGIVTRGTVLVGLVTTNNT-------FFSKVLTPGKVFLIPRALVHFQ 162
           +  PH + +     +V  G   V LV             +   L+   VF+IP A     
Sbjct: 251 LFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAI 310

Query: 163 LNVGNEPATFIPIFNTQNPGVSDSIGTLFDT-----TPPVPNEVLTKSFRVGDDVINTIR 217
               N   T   I N  N   +   G   +            +VL  +F    D +  + 
Sbjct: 311 KATSNVNFTGFGI-NANNNNRNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLI 369

Query: 218 AARAQS 223
             ++ S
Sbjct: 370 NKQSGS 375

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Length = 126

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 6/88 (6%)

Query: 94  NTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFL 153
           +     +    ++ GG+   H+HP       V +G      V          +  G    
Sbjct: 44  DAPNFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGK---LTVLKEQGEE--TVEEGFYIF 97

Query: 154 IPRALVHFQLNVGNEPATFIPIFNTQNP 181
           +    +H   N  +    F+ +   +  
Sbjct: 98  VEPNEIHGFRNDTDSEVEFLCLIPKEGG 125

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145

 Score = 53.4 bits (128), Expect = 3e-09
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 91  PAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGK 150
                    L   ++   G  PPH H        V  G++ + L     T     + PG+
Sbjct: 32  TPDGADRFVLTEFEVSPNGSTPPHFHE-WEHEIYVLEGSMGLVLPDQGRTE---EVGPGE 87

Query: 151 VFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSD 185
              IPR   H  +    +   F+ +   + P V +
Sbjct: 88  AIFIPRGEPHGFVTGPGQTCRFLVVAPCERPPVRN 122

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Length = 178

 Score = 53.4 bits (128), Expect = 4e-09
 Identities = 23/154 (14%), Positives = 39/154 (25%), Gaps = 9/154 (5%)

Query: 80  RAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN 139
           R +   +       N +   +         +  PH H       +V  G  ++ LV  + 
Sbjct: 23  RLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDG 81

Query: 140 TFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQNPGVSDSIGTLFDTTPPV- 197
              +  L  G    I      + +N   N+    +    T     +     L  T     
Sbjct: 82  RD-TYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPS 140

Query: 198 -----PNEVLTKSFRVGDDVINTIRAARAQSSWI 226
                    L  S+    D I        Q   I
Sbjct: 141 YLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVI 174

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Length = 105

 Score = 51.0 bits (122), Expect = 7e-09
 Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 5/86 (5%)

Query: 91  PAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGK 150
           P   ++ +      L  G     H H    +      G     +V         +L PG 
Sbjct: 21  PVFQSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGE---VVVRVGEE--EALLAPGM 75

Query: 151 VFLIPRALVHFQLNVGNEPATFIPIF 176
               P    H   N    PA  + + 
Sbjct: 76  AAFAPAGAPHGVRNESASPALLLVVT 101

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Length = 133

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 5/92 (5%)

Query: 82  VTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF 141
           V    +    A++ +     R+ L  G     H H    E   +  G    G+   N   
Sbjct: 41  VEMAHLLSKEAMHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGE---GVFHDNGKD 97

Query: 142 FSKVLTPGKVFLIPRALVHFQLNVGNEPATFI 173
               +  G V        H   N GN    F+
Sbjct: 98  VP--IKAGDVCFTDSGESHSIENTGNTDLEFL 127

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Length = 156

 Score = 49.9 bits (119), Expect = 5e-08
 Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 13/109 (11%)

Query: 71  DPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTV 130
               F    R + F D                 ++D GG +    H     A ++ RG  
Sbjct: 24  AEAPFQDVSRQLLFAD-------PNLACEWRYFEVDEGGYSTLERHA-HVHAVMIHRGH- 74

Query: 131 LVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQ 179
             G      T     +  G +  IP    H       +   F+ + N  
Sbjct: 75  --GQCLVGETIS--DVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVNAA 119

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Length = 350

 Score = 51.3 bits (122), Expect = 6e-08
 Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 16/139 (11%)

Query: 82  VTFGDVFGFPAV--NTQG-VALFRIDLDVGGIN--PPHTHPRGTEAGIVTRGTVLVGLVT 136
                ++ F     ++     L   +          PH H +  E     +G+  +   +
Sbjct: 29  TVDTQLYRFYVTGPSSGYAFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQS 88

Query: 137 TNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPG----VSDSIGTLF- 191
            N T  ++VL+ G    +PR + H    + +       +     PG    +   +GT   
Sbjct: 89  GNETQQTRVLSSGDYGSVPRNVTH-TFQIQDPDTEMTGVI---VPGGFEDLFYYLGTNAT 144

Query: 192 --DTTPPVPNEVLTKSFRV 208
               TP +P+   + S   
Sbjct: 145 DTTHTPYIPSSSDSSSTTG 163

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Length = 166

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 6/78 (7%)

Query: 102 RIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHF 161
             ++  GG +    H       ++ +G    G            + P  +  IP    H 
Sbjct: 57  YFEVGPGGHSTLERHQ-HAHGVMILKGR---GHAMVGRAVS--AVAPYDLVTIPGWSWHQ 110

Query: 162 QLNVGNEPATFIPIFNTQ 179
                +E   F+ + N +
Sbjct: 111 FRAPADEALGFLCMVNAE 128

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Length = 167

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 10/109 (9%)

Query: 71  DPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTV 130
           + T F   +R    G   G  A           +++ GG      H   T   +V RG  
Sbjct: 32  EGTHFSGARRQTLVGRPAGQEAPA---FETRYFEVEPGGYTTLERHE-HTHVVMVVRGH- 86

Query: 131 LVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNT 178
               V  ++      LTP     I     H     G NEP  F+ I ++
Sbjct: 87  --AEVVLDDRVE--PLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDS 131

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Length = 113

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 7/79 (8%)

Query: 100 LFRIDLDVGGI--NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRA 157
              + +  G     P + H    +   V  G    G    +    ++ L  G +  I R 
Sbjct: 23  AAEMVIAPGDREGGPDNRHRGADQWLFVVDGA---GEAIVDGH--TQALQAGSLIAIERG 77

Query: 158 LVHFQLNVGNEPATFIPIF 176
             H   N G+ P   +  +
Sbjct: 78  QAHEIRNTGDTPLKTVNFY 96

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Length = 125

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 12/106 (11%)

Query: 76  DVFKRAVTFGDVFGF--------PAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTR 127
           +   R  +  +              + T    +       G     H HP G +   V  
Sbjct: 9   ETESRIFSVDEYVRPSNGEPIRSVVLETNDSVVVVWHAHPGQEIASHVHPHGQDTWTVIS 68

Query: 128 GTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI 173
           G         N       L  G + +     VH  +N G EP  F+
Sbjct: 69  GEAEY--HQGNGIVT--HLKAGDIAIAKPGQVHGAMNSGPEPFIFV 110

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Length = 125

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 6/83 (7%)

Query: 92  AVNTQGVALFRIDLDVG-GINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGK 150
           ++   G  +    L  G G+   H+H +  E   +  G    G +T +       L  G 
Sbjct: 20  SLALTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGK---GFITIDGEKI--ELQAGD 74

Query: 151 VFLIPRALVHFQLNVGNEPATFI 173
              I            + P  F+
Sbjct: 75  WLRIAPDGKRQISAASDSPIGFL 97

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Length = 243

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 6/69 (8%)

Query: 108 GGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN 167
           GG  P H H    + GI   G   +   T      +  +  G  +       H  +N   
Sbjct: 156 GGEMPFHKHR-NEQIGICIGGGYDM---TVEGC--TVEMKFGTAYFCEPREDHGAINRSE 209

Query: 168 EPATFIPIF 176
           + +  I IF
Sbjct: 210 KESKSINIF 218

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 45.9 bits (108), Expect = 5e-06
 Identities = 18/167 (10%), Positives = 40/167 (23%), Gaps = 16/167 (9%)

Query: 20  LMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVTSDDFFTDFSKDPTTFDVFK 79
           +  P+      P   ++V         ++        +         + ++ P     + 
Sbjct: 130 IGNPYDHAEHPPYASEEVSNERFAEAAAVATIVFLDEAKPACSAKLAELTELPDGAVPYV 189

Query: 80  RA-------VTFGDVFGFPAVNTQG---VALFRIDLDVGGINPPHTHPRGTEAGIVTRGT 129
                    +T   +    A          +   +   G     H H   TE      G 
Sbjct: 190 LESGEGDRLLTGDQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQ 249

Query: 130 VLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176
           + +             L PG    +P   VH    + +     + + 
Sbjct: 250 MTMWT--DGQEI---QLNPGDFLHVPANTVH-SYRLDSHYTKMVGVL 290

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 44.8 bits (105), Expect = 9e-06
 Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 6/78 (7%)

Query: 99  ALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRAL 158
            +  +    G   P H H    E  +V  G + + L          +L  G    IP   
Sbjct: 47  EIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGER-----YLLISGDYANIPAGT 101

Query: 159 VHFQLNVGNEPATFIPIF 176
            H    + +     +   
Sbjct: 102 PH-SYRMQSHRTRLVSYT 118

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A* Length = 190

 Score = 44.7 bits (105), Expect = 5e-06
 Identities = 16/65 (24%), Positives = 26/65 (40%)

Query: 114 HTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI 173
           H      E  +  +G   + L T         + PG V  +P    H  +N+G+EP  F+
Sbjct: 91  HAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFL 150

Query: 174 PIFNT 178
            I+  
Sbjct: 151 AIYPA 155

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Length = 163

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 7/126 (5%)

Query: 57  SNVTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTH 116
           S V  +    D S+ P +       ++   V G      + V ++   +  G   P H H
Sbjct: 1   SCVRDNSLVRDISQMPQSSYG-IEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRH 59

Query: 117 PRGTEAGIVTRGTVLVGL----VTTNNTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPAT 171
               E   V +G   + +    +                F IP    H   N   +E   
Sbjct: 60  S-CEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQ 118

Query: 172 FIPIFN 177
            + I +
Sbjct: 119 VLVIIS 124

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A Length = 239

 Score = 42.3 bits (98), Expect = 5e-05
 Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 18/134 (13%)

Query: 65  FTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQ--GVALFRIDLDVGGINPPHTHPRGTEA 122
           F D    P   D         ++F   + + +  G A+    +  GG   PH H    E 
Sbjct: 9   FDDIPM-PKLADPLLIYTPANEIFDIASCSAKDIGFAIAHAQIPPGGGPMPHIHYFINEW 67

Query: 123 GIVTRGTV---------------LVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN 167
                G +                V         +S    P ++   P   +H  +N  +
Sbjct: 68  FWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFVNPTD 127

Query: 168 EPATFIPIFNTQNP 181
           +    + ++     
Sbjct: 128 KTLPIVFVWMRNEV 141

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Length = 354

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 6/110 (5%)

Query: 69  SKDPTTFDVFKRAVTFG-DVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTR 127
                  +  +R +          +  T  +      +  G + P H H   +    +  
Sbjct: 70  GGLIGAKEAVRRVLVLENPALRGQSSITATLYAGLQLIMPGEVAPSHRHN-QSALRFIVE 128

Query: 128 GTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFN 177
           G    G  T  +      +  G   L P+   H   N G+EP  ++   +
Sbjct: 129 GK---GAFTAVDGE-RTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLD 174

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3} Length = 163

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 108 GGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPR--ALVHFQLNV 165
              +  H H    E  +VT G     ++  +       + PG     P      H  +N 
Sbjct: 54  AKSSLRHYHMEQDEFVMVTEGA---LVLVDDQGEH--PMVPGDCAAFPAGDPNGHQFVNR 108

Query: 166 GNEPATFIPI 175
            + PATF+ +
Sbjct: 109 TDAPATFLVV 118

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} Length = 97

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 93  VNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVF 152
           ++ + V +       GG    H H        +T G +L+    T     +  LT G  +
Sbjct: 13  IDNERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLL---ETPEGSVTSQLTRGVSY 69

Query: 153 LIPRALVHFQLNVGNEPATFIPI 175
             P  + H  +N  +    F+ I
Sbjct: 70  TRPEGVEHNVINPSDTEFVFVEI 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	100.0
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	100.0
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	99.97
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	99.97
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	99.97
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	99.97
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.97
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.97
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.96
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.96
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.96
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	99.96
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.96
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.96
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.94
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	99.94
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	99.93
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	99.93
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.93
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.93
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.93
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.92
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.92
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.91
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	99.91
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	99.91
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.91
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	99.91
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.91
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.87
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.82
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.8
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	99.74
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.53
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	99.48
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	99.46
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	99.46
1v70_A	105	Probable antibiotics synthesis protein; structural	99.44
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	99.43
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	99.41
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	99.39
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	99.39
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	99.38
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	99.38
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	99.38
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	99.38
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	99.33
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	99.33
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	99.33
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	99.32
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	99.32
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	99.31
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	99.31
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	99.3
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	99.29
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	99.28
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	99.28
4i4a_A	128	Similar to unknown protein; structural genomics, P	99.26
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	99.26
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	99.25
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	99.24
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	99.22
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	99.21
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.2
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	99.2
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	99.19
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	99.15
1sef_A	274	Conserved hypothetical protein; structural genomic	99.14
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.13
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	99.12
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.11
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.08
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	99.07
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	99.06
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.05
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	99.05
1sfn_A	246	Conserved hypothetical protein; structural genomic	99.05
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	99.03
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	99.02
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.02
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	99.01
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	99.0
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	98.99
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	98.97
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.96
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	98.96
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.95
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.95
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.95
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.94
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.94
1sef_A	274	Conserved hypothetical protein; structural genomic	98.94
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.9
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.88
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	98.88
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	98.84
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.77
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	98.71
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	98.68
3bcw_A	123	Uncharacterized protein; structural genomics, join	98.66
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	98.66
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.65
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.62
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.55
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	98.53
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	98.51
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	98.51
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	98.48
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	98.48
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.43
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.4
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	98.36
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	98.35
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	98.22
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	98.19
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	98.16
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	98.12
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	98.1
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	98.09
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.8
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	97.77
3uss_A	211	Putative uncharacterized protein; cupin, three his	97.71
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	97.68
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	97.64
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	97.52
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.43
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	97.37
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	97.01
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	97.01
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	96.99
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	96.98
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	96.89
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	96.88
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	96.77
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	96.77
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	96.65
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	96.65
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	96.64
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	96.63
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	96.58
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	96.56
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	96.53
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	96.47
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	96.45
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	96.27
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	96.11
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	95.91
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	95.65
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	95.58
4diq_A	489	Lysine-specific demethylase NO66; structural genom	95.48
1e5r_A	290	Proline oxidase; oxidoreductase, oxygenase, 2-oxog	95.06
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	94.7
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	94.64
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	94.45
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	94.12
3kv5_D	488	JMJC domain-containing histone demethylation prote	93.73
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	93.61
3rcq_A	197	Aspartyl/asparaginyl beta-hydroxylase; structural	93.48
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	93.37
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	93.2
3kv9_A	397	JMJC domain-containing histone demethylation prote	92.9
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	92.79
1xru_A	282	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer;	92.4
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	91.07
3m3i_A	225	Putative uncharacterized protein; PFAM:PF06172, st	90.72
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	90.71
3loi_A	172	Putative uncharacterized protein; beta barrel, unk	90.4
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	89.61
2rg4_A	216	Uncharacterized protein; rhodobacterales, oceanico	89.41
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	88.82
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	88.66
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	88.06
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	87.43
3dl3_A	119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	86.94
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	86.9
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	86.85
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	86.44
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	86.33
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	85.73
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	84.03
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	82.3
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	82.25
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	81.45
1xe7_A	203	YML079WP, hypothetical 22.5 kDa protein in TUB1-CP	80.33

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=100.00  E-value=7.3e-48  Score=326.91  Aligned_cols=193  Identities=45%  Similarity=0.776  Sum_probs=182.6

Q ss_pred             cCCCCCCceeeccCCCc-cccCCccCCCCCCCCCCCeee-e-cCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEE
Q 045405           29 SDPDPLQDVCIADLNAT-ISINGFPCKPASNVTSDDFFT-D-FSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDL  105 (240)
Q Consensus        29 ~d~~~~~dfcva~~~~~-~~~~g~~ck~~~~v~~~df~f-~-l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l  105 (240)
                      +||||||||||||++++ +++||+||| |+.++++||+| + +.+++++.+..|+.++.++..++|+++++++++.++++
T Consensus         1 ~~~~~~~d~c~~~~~~~~~~~~g~~c~-~~~~~~~df~~~~~~~~~~~~~~~~G~~v~~~~~~~~p~l~~~~~~~~~~~l   79 (201)
T 1fi2_A            1 TDPDPLQDFCVADLDGKAVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDF   79 (201)
T ss_dssp             CCCCCSSSCCCBCCCTTSCCCSSCCBC-CGGGCCSCTTCCCTTSSCCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEE
T ss_pred             CCCcccceeEEecCCCCcccccCcccc-cCcccccceEEeeeecCCCCccCCCCcEEEEEecccCCCcccCceEEEEEEE
Confidence            59999999999999988 999999999 99999999999 5 88888888899999999999999999999999999999


Q ss_pred             cCCcccCCccCCCCCeEEEEeeCEEEEEEEccC---CeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCC
Q 045405          106 DVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN---NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPG  182 (240)
Q Consensus       106 ~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~---g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg  182 (240)
                      +||+..+||||++++|++||++|++++++.+.+   ++++++.|++||++++|+|..|++.|.|++++++++++++++|+
T Consensus        80 ~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~p~  159 (201)
T 1fi2_A           80 APGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPG  159 (201)
T ss_dssp             CTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSSCCC
T ss_pred             CCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCCCC
Confidence            999999999999989999999999999998765   67778899999999999999999999999999999999999999


Q ss_pred             ceeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCC
Q 045405          183 VSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQ  222 (240)
Q Consensus       183 ~~~~~~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~~  222 (240)
                      .+.++.++|+++|.+++++|+++|+++++++++|++++.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~vl~~af~~~~~~v~~l~~~~~~  199 (201)
T 1fi2_A          160 IVFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFAG  199 (201)
T ss_dssp             CEEHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHSTT
T ss_pred             eEehhhHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHhhcC
Confidence            9999999999877799999999999999999999998854

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=100.00  E-value=1.1e-32  Score=259.42  Aligned_cols=162  Identities=12%  Similarity=0.238  Sum_probs=146.5

Q ss_pred             eeecC--CCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-eE
Q 045405           65 FTDFS--KDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-TF  141 (240)
Q Consensus        65 ~f~l~--~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~~  141 (240)
                      .|++.  +.++..+..||+++.+++.+||+|++++|++++++|.||++++|||||+|+||+||++|++++++++++| ++
T Consensus       288 ~~Ni~~p~~~d~~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~  367 (466)
T 3kgl_A          288 TDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRV  367 (466)
T ss_dssp             EEETTCGGGEEEEETTTEEEEEECTTTCTTHHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEE
T ss_pred             cccccCcccCCcccCCCceEEEechhhCcccccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEE
Confidence            44444  3345567889999999999999999999999999999999999999999999999999999999999875 67


Q ss_pred             EEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 045405          142 FSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSI--GTLFDTTPPVPNEVLTKSFRVGDDVINTIRAA  219 (240)
Q Consensus       142 ~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~--~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~  219 (240)
                      +..+|++|||++||+|++|++ |.|++++++++++++++|+...++  .++|+   .+|++||+++|+++.+++++|+++
T Consensus       368 f~~~l~~GDV~v~P~G~~H~~-~ag~e~~~~l~~f~s~np~~~~LaG~~s~~~---~lP~eVla~aF~v~~~~v~~Lk~~  443 (466)
T 3kgl_A          368 FDGQVSQGQLLSIPQGFSVVK-RATSEQFRWIEFKTNANAQINTLAGRTSVLR---GLPLEVISNGYQISLEEARRVKFN  443 (466)
T ss_dssp             EEEEEETTCEEEECTTCEEEE-EECSSEEEEEEEESSSSCCEEESSSTTCTGG---GSCHHHHHHHHTCCHHHHHHHHHS
T ss_pred             EEeEecCCcEEEECCCCeEEE-EcCCCCEEEEEEECCCCCccccccchhhhhh---hCCHHHHHHHhCcCHHHHHHHHhc
Confidence            899999999999999999998 779999999999999999999887  57998   699999999999999999999999


Q ss_pred             cCCCceEEecC
Q 045405          220 RAQSSWINILD  230 (240)
Q Consensus       220 ~~~~~~i~~~~  230 (240)
                      +....++...+
T Consensus       444 q~e~~i~~~~~  454 (466)
T 3kgl_A          444 TIETTLTHSSG  454 (466)
T ss_dssp             CCCSSEEECC-
T ss_pred             cCccEEECCCc
Confidence            88777776653

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=99.97  E-value=2.5e-31  Score=251.93  Aligned_cols=159  Identities=11%  Similarity=0.223  Sum_probs=143.0

Q ss_pred             eeeecC--CCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-e
Q 045405           64 FFTDFS--KDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-T  140 (240)
Q Consensus        64 f~f~l~--~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~  140 (240)
                      +.+++.  ..++..+..||+++.+++.+||+|+++||++++++|.|||+++|||||+|+||+||++|++++++++++| +
T Consensus       322 l~~Ni~~p~~~di~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~  401 (496)
T 3ksc_A          322 LRLNIGPSSSPDIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNT  401 (496)
T ss_dssp             CEEECSTTSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCE
T ss_pred             hhccccccccCCcccCCCeeEEEeCHHHCccccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcE
Confidence            455555  3356668889999999999999999999999999999999999999999999999999999999999875 6


Q ss_pred             EEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHHh
Q 045405          141 FFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSI--GTLFDTTPPVPNEVLTKSFRVGDDVINTIRA  218 (240)
Q Consensus       141 ~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~--~~lf~s~~~~p~~vla~af~v~~~~v~~l~~  218 (240)
                      ++..+|++|||++||+|++|++.| +++++.+++++++++|+...++  .++|+   .+|++||+++|+++.+++++|++
T Consensus       402 ~f~~~l~~GDV~v~P~G~~H~~~a-~~e~~~~l~f~~s~np~~~~LaG~~sv~~---~~p~eVLa~aF~v~~~~v~~Lk~  477 (496)
T 3ksc_A          402 VFDGELEAGRALTVPQNYAVAAKS-LSDRFSYVAFKTNDRAGIARLAGTSSVIN---NLPLDVVAATFNLQRNEARQLKS  477 (496)
T ss_dssp             EEEEEEETTCEEEECTTCEEEEEE-CSSEEEEEEEESSTTCCEEESSSTTCTTT---TSCHHHHHHHHTCCHHHHHHHHH
T ss_pred             EEEEEecCCeEEEECCCCEEEEEe-CCCCEEEEEEECCCCCccccccchhhhhh---hCCHHHHHHHHCcCHHHHHHHHh
Confidence            778899999999999999999877 4788999999999999998886  67998   79999999999999999999999


Q ss_pred             hcCCCceE
Q 045405          219 ARAQSSWI  226 (240)
Q Consensus       219 ~~~~~~~i  226 (240)
                      .+....++
T Consensus       478 ~q~e~~i~  485 (496)
T 3ksc_A          478 NNPFKFLV  485 (496)
T ss_dssp             SCCCSSEE
T ss_pred             cCCccEEe
Confidence            87665544

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=99.97  E-value=8e-32  Score=253.54  Aligned_cols=155  Identities=11%  Similarity=0.221  Sum_probs=143.1

Q ss_pred             CCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-eEEEEEECC
Q 045405           70 KDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-TFFSKVLTP  148 (240)
Q Consensus        70 ~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~~~~~~l~~  148 (240)
                      +.+++.++.|++++.+++.+||+|+++||++++++|.|||+++|||||+|+||+||++|++++++++++| +++..+|++
T Consensus       295 ~~~dv~~~~gG~v~~~~~~~fP~L~~lgiS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~  374 (465)
T 3qac_A          295 SKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSR  374 (465)
T ss_dssp             TTCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCcccCCCceEEEeCHHHCCCccccceeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecC
Confidence            4566778899999999999999999999999999999999999999999999999999999999999875 688899999


Q ss_pred             CCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCCCceE
Q 045405          149 GKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSI--GTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWI  226 (240)
Q Consensus       149 GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~--~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~~~~~i  226 (240)
                      |||++||+|++|++. .|++++++++++++++|+...++  .++|+   .+|++||+++|+++.+++++|++++....++
T Consensus       375 GDVfvvP~g~~h~~~-ag~e~~~~l~f~~s~np~~~~LaG~~sv~~---~ip~eVla~aF~v~~e~v~~Lk~~~~e~~i~  450 (465)
T 3qac_A          375 GQLVVVPQNFAIVKQ-AFEDGFEWVSFKTSENAMFQSLAGRTSAIR---SLPIDVVSNIYQISREEAFGLKFNRPETTLF  450 (465)
T ss_dssp             TCEEEECTTCEEEEE-EEEEEEEEEEEESSTTCCEEESSSSSBHHH---HSCHHHHHHHHTCCHHHHHHHHHSCCSCSEE
T ss_pred             CeEEEECCCcEEEEE-cCCCCeEEEEEecCCCCcccccccchhhhh---hCCHHHHHHHhCCCHHHHHHHHhccCccEEE
Confidence            999999999999986 57889999999999999999887  68998   6999999999999999999999998777666


Q ss_pred             Ee
Q 045405          227 NI  228 (240)
Q Consensus       227 ~~  228 (240)
                      ..
T Consensus       451 ~~  452 (465)
T 3qac_A          451 RS  452 (465)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=99.97  E-value=5.9e-31  Score=248.05  Aligned_cols=155  Identities=15%  Similarity=0.219  Sum_probs=142.0

Q ss_pred             CCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-eEEEEEECC
Q 045405           70 KDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-TFFSKVLTP  148 (240)
Q Consensus        70 ~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~~~~~~l~~  148 (240)
                      ..+++.+..||+++.+++.+||+|+++++++++++|.||++.+|||||+|+|++||++|++++++++++| +++..+|++
T Consensus       294 ~~~~~~~~~gG~v~~~~~~~fP~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~  373 (459)
T 2e9q_A          294 ERADVFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVRE  373 (459)
T ss_dssp             SCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCcccCCCeeEEEeccccCccccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeC
Confidence            4556668899999999999999999999999999999999999999999999999999999999999875 667788999


Q ss_pred             CCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCCCceE
Q 045405          149 GKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSI--GTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWI  226 (240)
Q Consensus       149 GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~--~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~~~~~i  226 (240)
                      ||+++||+|++|++.| |++++.+++++++++|+...++  .++|+   .+|++||+++|+++++++++|++.+....++
T Consensus       374 GDv~v~P~G~~H~~~n-g~~~~~~l~~~~s~~~~~~~laG~~s~~~---~~p~~Vla~af~v~~~~v~~l~~~~~e~~i~  449 (459)
T 2e9q_A          374 GQVLMIPQNFVVIKRA-SDRGFEWIAFKTNDNAITNLLAGRVSQMR---MLPLGVLSNMYRISREEAQRLKYGQQEMRVL  449 (459)
T ss_dssp             TCEEEECTTCEEEEEE-EEEEEEEEEEESSSSCCEEESSSSSSHHH---HSCHHHHHHHHTCCHHHHHHHHHSCCSCSEE
T ss_pred             CcEEEECCCCEEEEEe-CCCCeEEEEEecCCCCcceeecchhHHHH---hCCHHHHHHHHCcCHHHHHHHHhcCCccEEe
Confidence            9999999999999999 7888999999999999999987  78998   6999999999999999999999987655544


Q ss_pred             Ee
Q 045405          227 NI  228 (240)
Q Consensus       227 ~~  228 (240)
                      ..
T Consensus       450 ~~  451 (459)
T 2e9q_A          450 SP  451 (459)
T ss_dssp             CS
T ss_pred             CC
Confidence            33

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=99.97  E-value=1.1e-30  Score=247.91  Aligned_cols=161  Identities=16%  Similarity=0.279  Sum_probs=143.0

Q ss_pred             eeeecC--CCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-e
Q 045405           64 FFTDFS--KDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-T  140 (240)
Q Consensus        64 f~f~l~--~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~  140 (240)
                      +.|++.  ..+++.++.|++++.+++.+||+|++++|++++++|.||++++|||||+|+||+||++|++++++++++| +
T Consensus       358 l~~Ni~~ps~~d~~n~~GG~v~~a~~~~fP~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~  437 (531)
T 3fz3_A          358 LKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDA  437 (531)
T ss_dssp             CEEECCCGGGCSEEETTTEEEEEESTTTCTHHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCE
T ss_pred             eeeccCCcccCCcccCCCeEEEEeccccCCccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcE
Confidence            456555  3456778899999999999999999999999999999999999999999999999999999999999875 6


Q ss_pred             EEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHHh
Q 045405          141 FFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSI--GTLFDTTPPVPNEVLTKSFRVGDDVINTIRA  218 (240)
Q Consensus       141 ~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~--~~lf~s~~~~p~~vla~af~v~~~~v~~l~~  218 (240)
                      +++.+|++||+++||+|++|+.. .|++.+.++++.++++|++..++  .++|+   .+|++||+++|+++.+++++|++
T Consensus       438 v~~~~L~~GDV~v~P~G~~H~~~-ag~e~l~flaF~ss~np~~~~LaG~~svf~---~lP~eVLa~aF~v~~e~v~kLk~  513 (531)
T 3fz3_A          438 ILDQEVQQGQLFIVPQNHGVIQQ-AGNQGFEYFAFKTEENAFINTLAGRTSFLR---ALPDEVLANAYQISREQARQLKY  513 (531)
T ss_dssp             EEEEEEETTCEEEECTTCEEEEE-EEEEEEEEEEEESSTTCCEEESSSTTCHHH---HSCHHHHHHHHTCCHHHHHHHHH
T ss_pred             EEEEEecCCeEEEECCCCeEEEe-cCCCCEEEEEEecCCCCcceeccchhHHHH---hCCHHHHHHHhCcCHHHHHHHHh
Confidence            78999999999999999999876 46677777765566899998887  78998   69999999999999999999999


Q ss_pred             hcCCCceEEe
Q 045405          219 ARAQSSWINI  228 (240)
Q Consensus       219 ~~~~~~~i~~  228 (240)
                      +.....++.+
T Consensus       514 ~~~es~i~~p  523 (531)
T 3fz3_A          514 NRQETIALSS  523 (531)
T ss_dssp             SCCCSSEECC
T ss_pred             cCCCceEECC
Confidence            9887776654

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.97  E-value=5.8e-30  Score=240.64  Aligned_cols=164  Identities=14%  Similarity=0.162  Sum_probs=141.4

Q ss_pred             CCCeeeecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-
Q 045405           61 SDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-  139 (240)
Q Consensus        61 ~~df~f~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-  139 (240)
                      ...+.|.|....+..+..||+++.+++.+||+|+++|+++++++|.||++++|||||+|+|++||++|+++++++++++ 
T Consensus       244 ~~~~~~~l~~~~p~~~~~~G~v~~~~~~~fP~L~~l~is~~~v~l~pg~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~~  323 (445)
T 2cav_A          244 SQDKPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQ  323 (445)
T ss_dssp             --CCCEETTSSCCSEESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC---
T ss_pred             CcccceeccccCCCccCCCceEEEeChHHCcccccCCCceEEEEeeCCceeeeEECCCCcEEEEEEeeEEEEEEEeCCCc
Confidence            3467787655544446777899999999999999999999999999999999999999999999999999999999864 


Q ss_pred             --------e--EEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE-eCCCCCceecc---chhhcCCCCCCHHHHHhh
Q 045405          140 --------T--FFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF-NTQNPGVSDSI---GTLFDTTPPVPNEVLTKS  205 (240)
Q Consensus       140 --------~--~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~-~s~~Pg~~~~~---~~lf~s~~~~p~~vla~a  205 (240)
                              +  +++.+|++|||++||+|++|++.|.  +++.++++. ++++|+.+.++   .++|+   .+|++||+++
T Consensus       324 ~~~~~~g~~~~~~~~~l~~GdV~vvP~g~~h~~~n~--~~~~~v~f~~~~~~~~~~~laG~~~sv~~---~~p~~vla~a  398 (445)
T 2cav_A          324 QQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAA--SDLNMVGIGVNAENNERNFLAGHKENVIR---QIPRQVSDLT  398 (445)
T ss_dssp             --------CCEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEEESCTTCCEEESSSSTTBSGG---GSCHHHHHHH
T ss_pred             ccccccCcceEEEEeEecCCcEEEEcCCcEEEEEcC--CCeEEEEEEccCCCCCcEEcccchhhhhh---hCCHHHHHHH
Confidence                    3  6899999999999999999999997  467887766 45689988887   78998   6999999999


Q ss_pred             cCCCHHHHHHHHhhcCCCceEEec
Q 045405          206 FRVGDDVINTIRAARAQSSWINIL  229 (240)
Q Consensus       206 f~v~~~~v~~l~~~~~~~~~i~~~  229 (240)
                      |+++.+++++|++.+....++..-
T Consensus       399 f~v~~~~v~~l~~~~~e~~~~~~~  422 (445)
T 2cav_A          399 FPGSGEEVEELLENQKESYFVDGQ  422 (445)
T ss_dssp             SSSCHHHHHHHHHHCCSCSEEECC
T ss_pred             HCcCHHHHHHHHhcCCccEEeCCc
Confidence            999999999999998777666553

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.97  E-value=8.3e-30  Score=237.89  Aligned_cols=165  Identities=13%  Similarity=0.150  Sum_probs=143.2

Q ss_pred             CCCeeeecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-
Q 045405           61 SDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-  139 (240)
Q Consensus        61 ~~df~f~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-  139 (240)
                      ...+.|.|....+..+..+|+++.+++.+||+|+++++++++++|.||++.+||||++|+|++||++|++++++++++| 
T Consensus       212 ~~~~~~~l~~~~p~~~~~~G~~~~~~~~~~P~L~~l~is~a~~~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g~  291 (416)
T 1uij_A          212 SEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQ  291 (416)
T ss_dssp             CSSSCEETTSSCCSEECSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC--
T ss_pred             CcccceeccccCCCccCCCceEEEEChHHCccchhcCcceEEEEEcCCcEecceEcCCCcEEEEEEeeEEEEEEEcCCCc
Confidence            4567787655544335556689999999999999999999999999999999999999999999999999999999876 


Q ss_pred             -------------eEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeC-CCCCceecc---chhhcCCCCCCHHHH
Q 045405          140 -------------TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNT-QNPGVSDSI---GTLFDTTPPVPNEVL  202 (240)
Q Consensus       140 -------------~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s-~~Pg~~~~~---~~lf~s~~~~p~~vl  202 (240)
                                   +++..+|++||+++||+|++|++.|.  +++.+++++++ ++|+.+.++   .++|+   .+|++||
T Consensus       292 ~~~~~~~~~~~~~~~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~l~f~~~~~~~~~~~laG~~~sv~~---~~p~~vl  366 (416)
T 1uij_A          292 QQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNAT--SNLNFLAFGINAENNQRNFLAGEKDNVVR---QIERQVQ  366 (416)
T ss_dssp             ----------CCEEEEEEEEETTCEEEECTTCCEEEEES--SSEEEEEEEETCTTCCEEESSSSTTBSGG---GSCHHHH
T ss_pred             cccccccccccceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEEEcCCCCCcceecccchhhHHH---hCCHHHH
Confidence                         47778999999999999999999998  57999998865 599998886   68998   6999999


Q ss_pred             HhhcCCCHHHHHHHHhhcCCCceEEecC
Q 045405          203 TKSFRVGDDVINTIRAARAQSSWINILD  230 (240)
Q Consensus       203 a~af~v~~~~v~~l~~~~~~~~~i~~~~  230 (240)
                      +++|+++++++++|++.+....++....
T Consensus       367 a~af~~~~~~v~~l~~~~~~~~~~~~~~  394 (416)
T 1uij_A          367 ELAFPGSAQDVERLLKKQRESYFVDAQP  394 (416)
T ss_dssp             HHHSSSCHHHHHHHTTSCCSCSEEEC--
T ss_pred             HHHHCcCHHHHHHHHhcCCccEEECCcc
Confidence            9999999999999999887666665543

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.96  E-value=2.6e-29  Score=235.63  Aligned_cols=167  Identities=16%  Similarity=0.192  Sum_probs=144.9

Q ss_pred             CCCCCeeeecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccC
Q 045405           59 VTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN  138 (240)
Q Consensus        59 v~~~df~f~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~  138 (240)
                      .....+.|.|....+..+..|++++.+++.++|+|+++|+++++++|.||++.+|||||+|+|++||++|++++++++++
T Consensus       227 ~~~~~~~~~l~~~~p~~~~~gG~v~~~~~~~~P~L~~l~is~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~  306 (434)
T 2ea7_A          227 LSSQDEPFNLRNSKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLS  306 (434)
T ss_dssp             TTCSSSCEETTSSCCSEEETTEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEEE
T ss_pred             CCCcccceeeccCCCceeCCCcEEEEEChhhCccccccCcceEEEEEcCCeeeccEEcCCCCEEEEEEeeEEEEEEEecC
Confidence            33456778766654444677789999999999999999999999999999999999999999999999999999999885


Q ss_pred             C-------------eEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEe-CCCCCceecc---chhhcCCCCCCHHH
Q 045405          139 N-------------TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFN-TQNPGVSDSI---GTLFDTTPPVPNEV  201 (240)
Q Consensus       139 g-------------~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~-s~~Pg~~~~~---~~lf~s~~~~p~~v  201 (240)
                      |             +++..+|++||+++||+|++|++.|.  +++.++++++ +++|+.+.++   .++|+   .+|++|
T Consensus       307 g~~~~~~~~~~~~~r~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~v~f~~~~~~~~~~~laG~~~sv~~---~~p~~v  381 (434)
T 2ea7_A          307 DQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINAT--SNLNFFAFGINAENNRRNFLAGGKDNVMS---EIPTEV  381 (434)
T ss_dssp             ECCCCTTSCCCEEEEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEEETCTTCCEEESSSSTTBGGG---GSCHHH
T ss_pred             ccccccccccCcceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEEECCCCCCCceecccchhhhhh---hCCHHH
Confidence            4             36778999999999999999999998  5788888775 4588988887   68998   699999


Q ss_pred             HHhhcCCCHHHHHHHHhhcCCCceEEecC
Q 045405          202 LTKSFRVGDDVINTIRAARAQSSWINILD  230 (240)
Q Consensus       202 la~af~v~~~~v~~l~~~~~~~~~i~~~~  230 (240)
                      |+++|+++.+++++|++.+....++....
T Consensus       382 la~af~v~~~~v~~l~~~~~e~~~~~~~~  410 (434)
T 2ea7_A          382 LEVSFPASGKKVEKLIKKQSESHFVDAQP  410 (434)
T ss_dssp             HHHHSSSCHHHHHHHHTTCCSCSEEECCC
T ss_pred             HHHHHCcCHHHHHHHHhcCCccEEECCCc
Confidence            99999999999999999887666666543

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.96  E-value=6.1e-29  Score=235.34  Aligned_cols=157  Identities=17%  Similarity=0.295  Sum_probs=142.8

Q ss_pred             CCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-eEEEEEECC
Q 045405           70 KDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-TFFSKVLTP  148 (240)
Q Consensus        70 ~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~~~~~~l~~  148 (240)
                      ..+++.+..|++++.++..++|+|+++++++++++|.||++.+|||||+++|++||++|++++++++++| +++..+|++
T Consensus       310 ~~~~~~~~~gG~v~~~~~~~~P~L~~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~  389 (476)
T 1fxz_A          310 SSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQE  389 (476)
T ss_dssp             SCCSEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCcccCCCeEEEEeccccCcccccCcceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcC
Confidence            4456668999999999999999999999999999999999999999999999999999999999998765 567788999


Q ss_pred             CCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCCCceE
Q 045405          149 GKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSI--GTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWI  226 (240)
Q Consensus       149 GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~--~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~~~~~i  226 (240)
                      ||+++||+|++|++.| |++++.+++++++++|+...++  .++|+   .+|++||+++|+++++++++|++.+....++
T Consensus       390 GDv~viP~G~~H~~~n-g~~~l~~l~f~~s~~p~~~~laG~~s~~~---~~p~~Vla~af~~~~~~v~~l~~~~~e~~i~  465 (476)
T 1fxz_A          390 GRVLIVPQNFVVAARS-QSDNFEYVSFKTNDTPMIGTLAGANSLLN---ALPEEVIQHTFNLKSQQARQIKNNNPFKFLV  465 (476)
T ss_dssp             TCEEEECTTCEEEEEE-CSTTEEEEEEESSSSCCEEESSSTTCTGG---GSCHHHHHHHHTCCHHHHHHHHHSCCCSSEE
T ss_pred             CCEEEECCCCeEEEEe-CCCCEEEEEEECCCCCceeEccchhHHHH---hCCHHHHHHHhCcCHHHHHHHHhhCCCcEEe
Confidence            9999999999999999 8889999998888999998887  78999   6999999999999999999999988766655


Q ss_pred             EecC
Q 045405          227 NILD  230 (240)
Q Consensus       227 ~~~~  230 (240)
                      ....
T Consensus       466 ~p~~  469 (476)
T 1fxz_A          466 PPQE  469 (476)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            5533

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.96  E-value=5e-29  Score=236.99  Aligned_cols=155  Identities=13%  Similarity=0.274  Sum_probs=141.8

Q ss_pred             CCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-eEEEEEECC
Q 045405           70 KDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-TFFSKVLTP  148 (240)
Q Consensus        70 ~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~~~~~~l~~  148 (240)
                      +.+++.+..|++++.++..+||+|+++++++++++|.||++.+||||++++|++||++|++++++++++| +++..+|++
T Consensus       344 ~~~~~~~~~gG~v~~~~~~~fP~L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~  423 (510)
T 3c3v_A          344 RSPDIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQE  423 (510)
T ss_dssp             SCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCcccCCCeEEEEeccccCcccccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcC
Confidence            4466778999999999999999999999999999999999999999999999999999999999998875 667788999


Q ss_pred             CCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCCCceE
Q 045405          149 GKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSI--GTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWI  226 (240)
Q Consensus       149 GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~--~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~~~~~i  226 (240)
                      ||+++||+|++|++.| |++++.+++++++++|+...++  .++|+   .+|++||+++|+++.+++++|++.+....++
T Consensus       424 GDv~viP~G~~H~~~N-g~e~l~~l~f~~s~~p~~~~LaG~~svf~---~lp~eVla~aF~v~~e~v~~L~~~~~e~~i~  499 (510)
T 3c3v_A          424 GHVLVVPQNFAVAGKS-QSDNFEYVAFKTDSRPSIANLAGENSVID---NLPEEVVANSYGLPREQARQLKNNNPFKFFV  499 (510)
T ss_dssp             TCEEEECTTCEEEEEE-CSSEEEEEEEESSSSCCEEESSSTTSTTT---TSCHHHHHHHHTCCHHHHHHHHHSCCCSSEE
T ss_pred             CcEEEECCCCeEEEEe-CCCCEEEEEEECCCCcceeecccHhHHHH---hCCHHHHHHHHCcCHHHHHHHHhhCCCcEEE
Confidence            9999999999999999 8888898888888899999887  78999   6999999999999999999999988765555


Q ss_pred             Ee
Q 045405          227 NI  228 (240)
Q Consensus       227 ~~  228 (240)
                      ..
T Consensus       500 ~p  501 (510)
T 3c3v_A          500 PP  501 (510)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=99.96  E-value=3.6e-29  Score=233.43  Aligned_cols=159  Identities=14%  Similarity=0.173  Sum_probs=137.6

Q ss_pred             CCeeeecCC-CCCccCcCCceEEEecccCC-CCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC
Q 045405           62 DDFFTDFSK-DPTTFDVFKRAVTFGDVFGF-PAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN  139 (240)
Q Consensus        62 ~df~f~l~~-~~~~~~~~G~~v~~~~~~~~-P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g  139 (240)
                      ..++|+|.. .|.+ +..+|+++.+++.++ |+|+++|+++++++|.|||+.+|||||+|+|++||++|+++++++++++
T Consensus       226 ~~~~~nl~~~~p~~-~n~~G~~~~~~~~~~~p~L~~~gis~~r~~l~pgg~~~PH~~p~A~ei~yV~~G~g~v~vv~~~~  304 (418)
T 3s7i_A          226 ITNPINLREGEPDL-SNNFGKLFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRK  304 (418)
T ss_dssp             CCCCEETTCSCCSE-EETTEEEEEECSBTTBHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEEECCEEEEEEEEEE
T ss_pred             CCcccccccCCCce-eCCCCeEEEechHHcchhhccCCeeEEEEEecCCceeCceecCCCCEEEEEEeCeEEEEEEeCCC
Confidence            367886554 4445 455667899999999 9999999999999999999999999999999999999999999998865


Q ss_pred             -------------------------eEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE-eCCCCCceeccc---hh
Q 045405          140 -------------------------TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF-NTQNPGVSDSIG---TL  190 (240)
Q Consensus       140 -------------------------~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~-~s~~Pg~~~~~~---~l  190 (240)
                                               +++..+|++|||++||+|++||+.|.+  +++++++. ++++|+.+.++.   ++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vvP~G~~~~~~~~~--~l~~v~f~~~~~~~~~~~LAG~~~sv  382 (418)
T 3s7i_A          305 EQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASS--ELHLLGFGINAENNHRIFLAGDKDNV  382 (418)
T ss_dssp             C-------------------CCEEEEEEEEEECTTCEEEECTTCCEEEEESS--CEEEEEEEESCTTCCEEESSSSTTBH
T ss_pred             ccccccccccccccccccccccccceEEEeeeCCCCEEEECCCCEEEEECCC--CEEEEEEEcCCCCCcceEccCchhhh
Confidence                                     567899999999999999999999864  47777754 456899998874   68


Q ss_pred             hcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCCCceE
Q 045405          191 FDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWI  226 (240)
Q Consensus       191 f~s~~~~p~~vla~af~v~~~~v~~l~~~~~~~~~i  226 (240)
                      |+   ++|++||++||+++.+++++|++.+.....+
T Consensus       383 ~~---~~~~evla~af~v~~~~v~~L~~~q~e~~~~  415 (418)
T 3s7i_A          383 ID---QIEKQAKDLAFPGSGEQVEKLIKNQKESHFV  415 (418)
T ss_dssp             HH---HSCHHHHHHHSSSCHHHHHHHHHTCCSCSEE
T ss_pred             hh---cCCHHHHHHHhCCCHHHHHHHHhcCCcceee
Confidence            88   7999999999999999999999988766544

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.96  E-value=1.8e-28  Score=204.29  Aligned_cols=160  Identities=13%  Similarity=0.170  Sum_probs=132.3

Q ss_pred             CCeeeecCCCCCccCcCCceEEEecc-----cCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEc
Q 045405           62 DDFFTDFSKDPTTFDVFKRAVTFGDV-----FGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVT  136 (240)
Q Consensus        62 ~df~f~l~~~~~~~~~~G~~v~~~~~-----~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~  136 (240)
                      +.|+|.+.+..+..+..||+++.++.     ..+|+++  ++++++++++||+..+|| |++++|++||++|++++++++
T Consensus         2 ~p~~f~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~pH-h~~a~E~~yVl~G~~~v~v~~   78 (178)
T 1dgw_A            2 NPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLR--DYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVN   78 (178)
T ss_dssp             CTTEECGGGEEEEEEETTEEEEEECCTTSSCGGGGGGT--TEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEE
T ss_pred             CCceechhhcccceEcCCCEEEEEcccCCcchhcCCcC--cEEEEEEEecCCcEecCc-CCCCCEEEEEEeEEEEEEEEe
Confidence            34778666554444778999999877     6688877  699999999999999999 889999999999999999998


Q ss_pred             cCCeEEEEEECCCCEEEeCCCCeEEEEecCCC-CEEEEEEE-eCCCCCceec---c-----chhhcCCCCCCHHHHHhhc
Q 045405          137 TNNTFFSKVLTPGKVFLIPRALVHFQLNVGNE-PATFIPIF-NTQNPGVSDS---I-----GTLFDTTPPVPNEVLTKSF  206 (240)
Q Consensus       137 ~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~-~a~~i~~~-~s~~Pg~~~~---~-----~~lf~s~~~~p~~vla~af  206 (240)
                      ++|. ..++|++||++++|+|.+|+++|.|++ ++++++++ ++++||.+..   +     .++|+   ++|++||+++|
T Consensus        79 ~~~~-~~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~~~~~~~g~~~~~~l~g~~~~~~~~~---~~p~~vla~af  154 (178)
T 1dgw_A           79 PDGR-DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLS---AFSKNFLEASY  154 (178)
T ss_dssp             TTEE-EEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGG---GSCHHHHHHHH
T ss_pred             CCCc-EEEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEEECCCCCCCceEEeeccCCcCcchhhh---hCCHHHHHHHH
Confidence            7653 378999999999999999999999986 78888775 4567874432   2     57998   79999999999


Q ss_pred             CCCHHHHHHHHh-hcCCCceEEe
Q 045405          207 RVGDDVINTIRA-ARAQSSWINI  228 (240)
Q Consensus       207 ~v~~~~v~~l~~-~~~~~~~i~~  228 (240)
                      +++++++++|+. ++....+|++
T Consensus       155 ~v~~~~~~~l~~~~~~~~~iv~~  177 (178)
T 1dgw_A          155 DSPYDEIEQTLLQEEQEGVIVKM  177 (178)
T ss_dssp             TSCHHHHHHHTTSCCSSSSEEEC
T ss_pred             CcCHHHHHHHhcCcCcCceEEEc
Confidence            999999999994 4445556654

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.94  E-value=2.3e-26  Score=213.28  Aligned_cols=152  Identities=18%  Similarity=0.185  Sum_probs=127.6

Q ss_pred             eecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEcc------CC
Q 045405           66 TDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTT------NN  139 (240)
Q Consensus        66 f~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~------~g  139 (240)
                      +++.+..+..+..+|+++.+++.+      +++++++++|.||++.+||||++|+|+.||++|+++++++++      ++
T Consensus       213 ~~l~~~~p~~~n~~G~~~~v~~~~------l~is~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g  286 (397)
T 2phl_A          213 KSLSKQDNTIGNEFGNLTERTDNS------LNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLE  286 (397)
T ss_dssp             -------CEEEETTEEEEEEEETT------TTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSC
T ss_pred             ccccccCCcccCCCCeEEEEeecc------CCeeEEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCC
Confidence            355554444456667799999887      789999999999999999999999999999999999999998      44


Q ss_pred             -eEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEe-CCCCCceecc---chhhcCCCCCC-----HHHHHhhcCCC
Q 045405          140 -TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFN-TQNPGVSDSI---GTLFDTTPPVP-----NEVLTKSFRVG  209 (240)
Q Consensus       140 -~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~-s~~Pg~~~~~---~~lf~s~~~~p-----~~vla~af~v~  209 (240)
                       ++++.+|++||+++||+|++|+++|.+  ++.++++.+ +++|+.+.++   .++|+   .+|     ++||+++|+++
T Consensus       287 ~~~~~~~l~~GDV~vvP~G~~h~~~n~~--~l~~l~f~~~s~~~~~~~laG~~~sv~~---~~p~~~~~~eVla~af~v~  361 (397)
T 2phl_A          287 YESYRAELSKDDVFVIPAAYPVAIKATS--NVNFTGFGINANNNNRNLLAGKTDNVIS---SIGRALDGKDVLGLTFSGS  361 (397)
T ss_dssp             EEEEEEEEETTCEEEECTTCCEEEEESS--SEEEEEEEESCTTCCEEESSSSSSBHHH---HHHTSTTHHHHHHHHSSSC
T ss_pred             ceEEEEEecCCCEEEECCCCeEEEEeCC--CeEEEEEECCCCCCcceecccchhhHHh---hCCCccchHHHHHHHhCcC
Confidence             788999999999999999999999986  788888765 4589988877   78998   477     99999999999


Q ss_pred             HHHHHHHHhhcCCCceEEe
Q 045405          210 DDVINTIRAARAQSSWINI  228 (240)
Q Consensus       210 ~~~v~~l~~~~~~~~~i~~  228 (240)
                      ++++++|++.+....++..
T Consensus       362 ~~~v~~l~~~~~e~~i~~~  380 (397)
T 2phl_A          362 GDEVMKLINKQSGSYFVDA  380 (397)
T ss_dssp             HHHHHHHHTTCCCCSEEEC
T ss_pred             HHHHHHHHhcCCccEEeCC
Confidence            9999999998866655554

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=99.94  E-value=3.3e-26  Score=215.71  Aligned_cols=151  Identities=14%  Similarity=0.256  Sum_probs=128.4

Q ss_pred             CcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe-EE------------
Q 045405           76 DVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT-FF------------  142 (240)
Q Consensus        76 ~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~-~~------------  142 (240)
                      ...+|.+.. ...+.|.|+++|++++|++|+|||+++||||+ ++|++||++|++++++++++++ .|            
T Consensus        42 ~se~G~~~~-~~~~~~~l~~~gvs~~r~~i~pggl~~Ph~h~-a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~  119 (459)
T 2e9q_A           42 EAEAGFTEV-WDQDNDEFQCAGVNMIRHTIRPKGLLLPGFSN-APKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGS  119 (459)
T ss_dssp             EETTEEEEE-CCTTSHHHHHHTEEEEEEEECTTEEEEEEEES-SCEEEEEEECEEEEEECCTTCCCCEEECCC-------
T ss_pred             ecCCcEEEe-cCCCChhhccCceEEEEEEEcCCCEecceecC-CceEEEEEeeEEEEEEEeCCCcchhccchhhcccccc
Confidence            566775555 55677999999999999999999999999995 8999999999999999988653 22            


Q ss_pred             --------EEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCC--------CCceecc-------------------
Q 045405          143 --------SKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQN--------PGVSDSI-------------------  187 (240)
Q Consensus       143 --------~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~--------Pg~~~~~-------------------  187 (240)
                              .++|++||+++||+|++||++|.|++++++++++++.|        +..+.++                   
T Consensus       120 ~~~d~~q~~~~l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~~~~  199 (459)
T 2e9q_A          120 AFKDQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVEEWERSSRK  199 (459)
T ss_dssp             CCCEEECCCEEEETTEEEEECTTCCEEEEECSSSCEEEEEEEESSSTTCCSCSSCCEEESSSCCCCCSSTTCC-------
T ss_pred             ccccccceeEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCCCcccccCcccceeeccCCccccchhhhcccccccc
Confidence                    46899999999999999999999999999999998654        3333333                   


Q ss_pred             -------chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCCC-ceEEecCC
Q 045405          188 -------GTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQS-SWINILDG  231 (240)
Q Consensus       188 -------~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~~~-~~i~~~~~  231 (240)
                             .++|+   +|++++|++||+++.+++++|++.+..+ .||++.++
T Consensus       200 ~~~~~~~~nif~---gf~~evLa~aF~v~~~~v~kL~~~~~~~G~Iv~~~~~  248 (459)
T 2e9q_A          200 GSSGEKSGNIFS---GFADEFLEEAFQIDGGLVRKLKGEDDERDRIVQVDED  248 (459)
T ss_dssp             -----CCCCTTT---TSCHHHHHHHHTCCHHHHHHHHTTTCCSTTEEECCSS
T ss_pred             ccccccccchhh---cCCHHHHHhhcCCCHHHHHhhhhcccCCccEEEeCCc
Confidence                   37998   7999999999999999999999988755 57877644

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=99.93  E-value=5.8e-26  Score=213.75  Aligned_cols=151  Identities=18%  Similarity=0.350  Sum_probs=129.2

Q ss_pred             CcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-eEE------------
Q 045405           76 DVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-TFF------------  142 (240)
Q Consensus        76 ~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~~~------------  142 (240)
                      ...||.+..++.. .+.|+|+|++++|++|+|||+.+|||| +++|++||++|+++++++.+++ +.|            
T Consensus        29 ~se~G~~e~~d~~-~~~l~~~gvs~~R~~i~P~gl~~Ph~h-~a~ei~yV~qG~g~~g~v~pgc~etf~~~~~~~~~~~~  106 (465)
T 3qac_A           29 QAERGLTEVWDSN-EQEFRCAGVSVIRRTIEPHGLLLPSFT-SAPELIYIEQGNGITGMMIPGCPETYESGSQQFQGGED  106 (465)
T ss_dssp             EETTEEEEECCTT-SHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECEEEEEEECTTCCCCC------------
T ss_pred             eCCCcEEEEECCC-ChhhcccceEEEEEEEcCCcCcccEEc-CCCEEEEEEECcEEEEEecCCCCceeecchhccccccc
Confidence            5678888888754 478999999999999999999999999 8999999999999999998753 222            


Q ss_pred             ------------------------EEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCC---------Cceecc--
Q 045405          143 ------------------------SKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNP---------GVSDSI--  187 (240)
Q Consensus       143 ------------------------~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~P---------g~~~~~--  187 (240)
                                              .+.+++||++++|+|++||++|+|++++++++++++.|+         ..+.++  
T Consensus       107 ~~~~~~~~~~~~~~~~~~~d~hqk~~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n~~nqld~~~~r~F~LaG~  186 (465)
T 3qac_A          107 ERIREQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQLDKNFPTRFYLAGK  186 (465)
T ss_dssp             ------------------CCCCCCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEECTTSTTCCSCSSSCCEEESSSC
T ss_pred             cccccccccccccccccccccccceeeecCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCCcccccccccceeEEecCC
Confidence                                    358999999999999999999999999999999987543         334443  


Q ss_pred             ----------------------chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCCC-ceEEecCC
Q 045405          188 ----------------------GTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQS-SWINILDG  231 (240)
Q Consensus       188 ----------------------~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~~~-~~i~~~~~  231 (240)
                                            .++|+   +|++++|++||+++.+++++|++.+..+ .+|++.++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~ni~s---gF~~e~La~Af~v~~~~~~kl~~~q~~rG~Ivrv~~~  250 (465)
T 3qac_A          187 PQQEHSGEHQFSRESRRGERNTGNIFR---GFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRVQEG  250 (465)
T ss_dssp             CCCSCC--------------CCCCGGG---GSCHHHHHHHHTCCHHHHHHHHTTTCCSCSEEEC-CC
T ss_pred             Cccccccccccccccccccccccchhh---cCCHHHHHHHhCCCHHHHHHhhhccccceeEEEecCc
Confidence                                  37999   8999999999999999999999888755 48887654

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=99.93  E-value=1e-25  Score=213.56  Aligned_cols=154  Identities=15%  Similarity=0.250  Sum_probs=129.3

Q ss_pred             CcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-eEE------------
Q 045405           76 DVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-TFF------------  142 (240)
Q Consensus        76 ~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~~~------------  142 (240)
                      ...||. +.+...+.|+|+++|++++|++|+|||+++|||| +|+|++||++|++.++++.+++ +.|            
T Consensus        25 ~se~G~-~e~~~~~~~~L~~~gvs~~R~~i~pggl~lPh~~-~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~~~~~~~~~  102 (496)
T 3ksc_A           25 ESEGGL-IETWNPNNKQFRCAGVALSRATLQRNALRRPYYS-NAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGR  102 (496)
T ss_dssp             EETTEE-EEECCTTSHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECCEEEEEECTTCCCC-------------
T ss_pred             CCCCcE-EEeccccchhhccCCceEEEEEecCCCEeCceEc-CCCEEEEEEeCceEEEEEeCCCCccchhhhhccccccc
Confidence            456674 5555688999999999999999999999999999 8999999999999999998863 333            


Q ss_pred             --------EEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCC--------ceecc-------------------
Q 045405          143 --------SKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPG--------VSDSI-------------------  187 (240)
Q Consensus       143 --------~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg--------~~~~~-------------------  187 (240)
                              .++|++||||+||+|++||++|.|+++++++++++..++.        .+.++                   
T Consensus       103 ~~~d~~qk~~~l~~GDV~viPaG~~h~~~N~G~~~lv~v~~~d~~n~~NQld~~~r~F~LaG~~~~~~~~~~~~~~~~~~  182 (496)
T 3ksc_A          103 RYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQYQHQQGGKQE  182 (496)
T ss_dssp             --CCCCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTGGGCC-------
T ss_pred             ccccchheeeccCCCCEEEECCCCcEEEEcCCCCCEEEEEEeccCcccccCCCceeeeEecCCCcccccccccccccccc
Confidence                    3599999999999999999999999999999999765532        22221                   


Q ss_pred             -----chhhcCCCCCCHHHHHhhcCCCHHHHHHHH--hh-cCCCceEEecCCeee
Q 045405          188 -----GTLFDTTPPVPNEVLTKSFRVGDDVINTIR--AA-RAQSSWINILDGRSI  234 (240)
Q Consensus       188 -----~~lf~s~~~~p~~vla~af~v~~~~v~~l~--~~-~~~~~~i~~~~~~~~  234 (240)
                           .++|+   +|+.++|+.||+++.++++||+  .. .....||++.++.++
T Consensus       183 ~~~~~~ni~s---gF~~e~La~Af~v~~e~~~kl~~~~~~~~rg~IV~v~~~l~~  234 (496)
T 3ksc_A          183 QENEGNNIFS---GFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVKVKGGLSI  234 (496)
T ss_dssp             ----CCSGGG---GSCHHHHHHHHTCCHHHHHHHTTTTCCTTTCSEEECSSCCCC
T ss_pred             ccccCCCchh---hcCHHHHHHHHCCCHHHHHHHHhhcccccCccEEEecCcccc
Confidence                 47999   8999999999999999999999  33 345669999876553

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.93  E-value=8.6e-26  Score=213.79  Aligned_cols=152  Identities=14%  Similarity=0.231  Sum_probs=127.5

Q ss_pred             CcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeE--------------
Q 045405           76 DVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF--------------  141 (240)
Q Consensus        76 ~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~--------------  141 (240)
                      ...+|.+.. .....|.|+++|++++|++|+|||+.+||||+ ++|++||++|++++++++++++.              
T Consensus        27 ~se~G~~e~-~~~~~~~l~~~gvs~~r~~l~Pggl~~Ph~~~-a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~  104 (476)
T 1fxz_A           27 ESEGGLIET-WNPNNKPFQCAGVALSRCTLNRNALRRPSYTN-GPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQS  104 (476)
T ss_dssp             EETTEEEEE-CCTTSHHHHHHTCEEEEEEECTTEEEEEEEES-SCEEEEEEECCEEEEEECTTCCCC-------------
T ss_pred             ecCCceEEe-eCCCChhhccCceEEEEEEEcCCCEecceecC-CceEEEEEecEEEEEEEcCCCcchhhccccccccccc
Confidence            567775555 44566999999999999999999999999996 89999999999999999986641              


Q ss_pred             --------EEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCC--------Cceecc------------------
Q 045405          142 --------FSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNP--------GVSDSI------------------  187 (240)
Q Consensus       142 --------~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~P--------g~~~~~------------------  187 (240)
                              ..++|++||+++||+|++||++|.|++++++++++++.++        ..+.++                  
T Consensus       105 ~~~~d~~qk~~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~~~~  184 (476)
T 1fxz_A          105 SRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQ  184 (476)
T ss_dssp             -----CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTHHHHC------
T ss_pred             cccccccceEEEEeCCCEEEECCCCcEEEEeCCCCCEEEEEEecCCCcccccCCccceeeccCCcccccccccccccccc
Confidence                    2578999999999999999999999999999999985543        233332                  


Q ss_pred             --------------chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcC---CCceEEecCCe
Q 045405          188 --------------GTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARA---QSSWINILDGR  232 (240)
Q Consensus       188 --------------~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~---~~~~i~~~~~~  232 (240)
                                    .++|+   +|++++|++||+++.+++++|++.+.   ...||++.++.
T Consensus       185 ~~~~~~~~~~~~~~~~if~---gf~~~vLa~af~v~~~~~~kl~~~~~~~~~g~Iv~v~~~l  243 (476)
T 1fxz_A          185 SQKGKHQQEEENEGGSILS---GFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGL  243 (476)
T ss_dssp             -------------CCCGGG---GSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEECSSCC
T ss_pred             ccccccccccccccchhhh---cCCHHHHHhhhCCCHHHHHhhhccccccccccEEEeCCcc
Confidence                          47998   89999999999999999999998877   55688877653

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.93  E-value=2.6e-25  Score=209.02  Aligned_cols=167  Identities=13%  Similarity=0.131  Sum_probs=135.7

Q ss_pred             CCCeeeecCCCCCccCcCCceEEEecc--cCCCCCCccc-eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEcc
Q 045405           61 SDDFFTDFSKDPTTFDVFKRAVTFGDV--FGFPAVNTQG-VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTT  137 (240)
Q Consensus        61 ~~df~f~l~~~~~~~~~~G~~v~~~~~--~~~P~l~~~g-ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~  137 (240)
                      .+.|+|...+........+|.+..++.  .+.|.+++++ +++++++++||++.+|| |++++|++||++|+++++++++
T Consensus        46 ~~p~vf~~~~~~~~i~~e~G~i~~l~~~~~~~~~l~~~g~~s~~~~~l~Pgg~~~pH-h~~a~E~~yVl~G~g~v~~v~~  124 (445)
T 2cav_A           46 NNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNP  124 (445)
T ss_dssp             CCTTEECGGGEEEEEEETTEEEEEECCTTSSCSTTGGGTTEEEEEEEECSSEEEEEE-EESSEEEEEEEESEEEEEEEET
T ss_pred             CCCeEEchhhcCceEEcCCEEEEEEeccCcccccccccCcEEEEEEEECCCcCccCc-CCCCceEEEEEeCEEEEEEEeC
Confidence            456777543322122456787888754  4567898888 99999999999999999 6689999999999999999987


Q ss_pred             CCeEEEEEECCCCEEEeCCCCeEEEEecC-CCCEEEEEEEe-CCCCCce---ecc-----chhhcCCCCCCHHHHHhhcC
Q 045405          138 NNTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFN-TQNPGVS---DSI-----GTLFDTTPPVPNEVLTKSFR  207 (240)
Q Consensus       138 ~g~~~~~~l~~GDv~v~P~G~~H~~~N~G-~~~a~~i~~~~-s~~Pg~~---~~~-----~~lf~s~~~~p~~vla~af~  207 (240)
                      +++ +++++++||++++|+|.+||++|.| +++++++++++ +++||.+   .++     .++|+   ++|++||+++|+
T Consensus       125 ~~~-~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~v~~~~~~pg~~~~F~laG~~~~~~~~~---~~~~~vLa~af~  200 (445)
T 2cav_A          125 DGR-DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLS---AFSKNFLEASYD  200 (445)
T ss_dssp             TEE-EEEEEETTEEEEECTTCCEEEEECCSSCCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGG---GSCHHHHHHHHT
T ss_pred             CCC-EEEEecCCCEEEECCCCcEEEEECCCCCCEEEEEEeccCCCCCceeeeeccCCCchhhhhh---cCCHHHHHHHhC
Confidence            655 6899999999999999999999998 89999999887 5667643   333     37898   799999999999


Q ss_pred             CCHHHHHHHHhhc-CCCceEEecCCe
Q 045405          208 VGDDVINTIRAAR-AQSSWINILDGR  232 (240)
Q Consensus       208 v~~~~v~~l~~~~-~~~~~i~~~~~~  232 (240)
                      ++.+++++|++.. ....++++.+++
T Consensus       201 v~~~~v~~l~~~~~~~g~Iv~~~~~~  226 (445)
T 2cav_A          201 SPYDEIEQTLLQEEQEGVIVKMPKDQ  226 (445)
T ss_dssp             SCHHHHHHHTTSCCSSSSEEECCCC-
T ss_pred             CCHHHHHhhhcccCCCCcEEEeCCcc
Confidence            9999999999644 456688877664

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.93  E-value=2.7e-25  Score=206.08  Aligned_cols=167  Identities=14%  Similarity=0.114  Sum_probs=137.7

Q ss_pred             CCCeeeecCC-CCCccCcCCceEEEe--cccCCCCCCccc-eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEc
Q 045405           61 SDDFFTDFSK-DPTTFDVFKRAVTFG--DVFGFPAVNTQG-VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVT  136 (240)
Q Consensus        61 ~~df~f~l~~-~~~~~~~~G~~v~~~--~~~~~P~l~~~g-ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~  136 (240)
                      .+.|+|...+ -.+.....||.++.+  ...+.|.|++++ +++++++++|||+.+|||| +++|++||++|++++++++
T Consensus        11 ~~p~~f~~~~~~~~~~~~e~G~i~~l~~~~~~~~~l~~~~~~s~~~~~l~pgg~~~ph~~-~a~ei~yVl~G~~~v~~v~   89 (397)
T 2phl_A           11 DNPFYFNSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVK   89 (397)
T ss_dssp             CCTTEECGGGTEEEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEEE
T ss_pred             CCCcEeccchhccceEEcCCEEEEEecccCCCChhhcccccEEEEEEEECCCcCccCEec-CCCeEEEEEeeeEEEEEEe
Confidence            3567775433 223447888888887  456679999998 9999999999999999999 7899999999999999999


Q ss_pred             cCCeEEEEEECCCCE------EEeCCCCeEEEEecC-CCCEEEEEEEeCCC-C--Cceecc-----chhhcCCCCCCHHH
Q 045405          137 TNNTFFSKVLTPGKV------FLIPRALVHFQLNVG-NEPATFIPIFNTQN-P--GVSDSI-----GTLFDTTPPVPNEV  201 (240)
Q Consensus       137 ~~g~~~~~~l~~GDv------~v~P~G~~H~~~N~G-~~~a~~i~~~~s~~-P--g~~~~~-----~~lf~s~~~~p~~v  201 (240)
                      ++++ .+++|++||+      ++||+|.+||++|.| ++++++++++++.+ |  ..+.++     .++|+   ++|++|
T Consensus        90 ~~~~-~~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~~i~~~~~~~~~~~~~f~L~G~~~~~s~~~---~~~~~v  165 (397)
T 2phl_A           90 PDDR-REYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQ---EFSKHI  165 (397)
T ss_dssp             TTTE-EEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEECCCBTTBCCGGG---GSCHHH
T ss_pred             CCCc-EEEEECCCCcccccceEEECCCCcEEEEeCCCCCCeEEEEeecCCCCccceeeeccCCCchhHHhh---cCCHHH
Confidence            8776 4899999999      999999999999999 78999999987543 4  234443     35888   799999


Q ss_pred             HHhhcCCCHHHHHHHH-hhc--CCCceEEecCCe
Q 045405          202 LTKSFRVGDDVINTIR-AAR--AQSSWINILDGR  232 (240)
Q Consensus       202 la~af~v~~~~v~~l~-~~~--~~~~~i~~~~~~  232 (240)
                      |+++|+++.+++++|+ +..  ....++++..++
T Consensus       166 La~af~v~~~~v~~l~~~~~~q~~~~Iv~~~~~~  199 (397)
T 2phl_A          166 LEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQ  199 (397)
T ss_dssp             HHHHHTSCHHHHHHHHTCSTTCBSSSEEECCTTT
T ss_pred             HHHHhCCCHHHHHhhhhcccccccCceEEcCccc
Confidence            9999999999999999 443  245688877664

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.92  E-value=3.3e-25  Score=207.82  Aligned_cols=164  Identities=16%  Similarity=0.164  Sum_probs=133.7

Q ss_pred             CCeeeecCC-CCCccCcCCceEEEec--ccCCCCCCccc-eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEcc
Q 045405           62 DDFFTDFSK-DPTTFDVFKRAVTFGD--VFGFPAVNTQG-VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTT  137 (240)
Q Consensus        62 ~df~f~l~~-~~~~~~~~G~~v~~~~--~~~~P~l~~~g-ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~  137 (240)
                      +.|+|.+.+ -.......||++..++  ..+.|.|++++ +++++++|+||++.+|| |++++|++||++|+++++++++
T Consensus        21 ~p~~f~~~~~~~~~~~se~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~Ei~yVl~G~g~v~~v~~   99 (434)
T 2ea7_A           21 NPFYFNSDRWFRTLYRNEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLVNP   99 (434)
T ss_dssp             CTTEECTTTSEEEEEEETTEEEEEECCSTTTCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEECS
T ss_pred             CCeEEeccccccceEEcCCEEEEEEeccCCcccccCccccEEEEEEEecCCcCccCc-cCCCceEEEEEecEEEEEEEeC
Confidence            457776544 2233456788888874  35668899988 99999999999999999 7799999999999999999986


Q ss_pred             CCeEEEEEECCCCEEEeCCCCeEEEEecC-CCCEEEEEEEe-CCCCCce---eccc-----hhhcCCCCCCHHHHHhhcC
Q 045405          138 NNTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFN-TQNPGVS---DSIG-----TLFDTTPPVPNEVLTKSFR  207 (240)
Q Consensus       138 ~g~~~~~~l~~GDv~v~P~G~~H~~~N~G-~~~a~~i~~~~-s~~Pg~~---~~~~-----~lf~s~~~~p~~vla~af~  207 (240)
                       ++.+.+++++||++++|+|.+||++|.| +++++++++++ +++|+.+   .++.     ++|+   ++|++||+++|+
T Consensus       100 -~~~~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~~l~~~~~s~~pg~~~~f~l~g~~~~~~~~~---~~~~~vLa~af~  175 (434)
T 2ea7_A          100 -DSRDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQSYLR---GFSKNILEASFD  175 (434)
T ss_dssp             -SCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGG---GSCHHHHHHHHT
T ss_pred             -CCCEEEEeCCCCEEEECCCccEEEEeCCCCCCeEEEEEecCCCCCCceeeeeecCCcchhhhhh---cCCHHHHHHHhC
Confidence             4456889999999999999999999998 88999999875 6777643   3443     4888   799999999999


Q ss_pred             CCHHHHHHHH-hhc----------CCCceEEecC
Q 045405          208 VGDDVINTIR-AAR----------AQSSWINILD  230 (240)
Q Consensus       208 v~~~~v~~l~-~~~----------~~~~~i~~~~  230 (240)
                      ++.+++++|+ +..          ....++++.+
T Consensus       176 v~~~~v~~l~~~~~~~~~~~~~~q~~g~Iv~~~~  209 (434)
T 2ea7_A          176 SDFKEINRVLFGEERQQQQGEESREEGVIVELKR  209 (434)
T ss_dssp             SCHHHHHHHHTCC---------CCCSSSEEECCH
T ss_pred             CCHHHHHhhhhcccccccccccccccceEEECCc
Confidence            9999999999 653          2455776543

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.92  E-value=3.1e-25  Score=206.99  Aligned_cols=164  Identities=16%  Similarity=0.196  Sum_probs=134.2

Q ss_pred             CCCeeee-cCCCCCccCcCCceEEEecc--cCCCCCCccc-eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEc
Q 045405           61 SDDFFTD-FSKDPTTFDVFKRAVTFGDV--FGFPAVNTQG-VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVT  136 (240)
Q Consensus        61 ~~df~f~-l~~~~~~~~~~G~~v~~~~~--~~~P~l~~~g-ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~  136 (240)
                      .+.|+|. ..+........||+++.+..  ...+.|++++ +++++++++||++.+|| |++++|++||++|++++++++
T Consensus         8 ~~p~~f~~~~~~~~~~~~e~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pH-h~~a~E~~yVl~G~g~v~~v~   86 (416)
T 1uij_A            8 NNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVN   86 (416)
T ss_dssp             SCTTEECGGGSEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEEC
T ss_pred             CCCeEecccccccceEEcCCEEEEEEeccCCccccccCcccEEEEEEEeccCcCcccc-cCCCceEEEEEeeEEEEEEEE
Confidence            3557775 54433334677888888743  4558888887 99999999999999999 778999999999999999998


Q ss_pred             cCCeEEEEEECCCCEEEeCCCCeEEEEecC-CCCEEEEEEEe-CCCCCce---eccc-----hhhcCCCCCCHHHHHhhc
Q 045405          137 TNNTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFN-TQNPGVS---DSIG-----TLFDTTPPVPNEVLTKSF  206 (240)
Q Consensus       137 ~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G-~~~a~~i~~~~-s~~Pg~~---~~~~-----~lf~s~~~~p~~vla~af  206 (240)
                      + ++.+++++++||++++|+|.+||++|.| +++++++++++ +++||.+   .++.     ++|+   ++|++||+++|
T Consensus        87 ~-~~~~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~~~~~pg~~~~f~l~g~~~~~~~~~---~~~~~vLa~af  162 (416)
T 1uij_A           87 N-DDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQ---GFSHNILETSF  162 (416)
T ss_dssp             S-SCEEEEEECTTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSSCCCGGG---GSCHHHHHHHH
T ss_pred             C-CCCeEEEecCCCEEEECCCCeEEEEecCCCCCEEEEEEeccCCCCCcceeeeecCCcccchhhh---cCCHHHHHHHh
Confidence            8 5556899999999999999999999995 99999999986 5677643   3442     5888   79999999999


Q ss_pred             CCCHHHHHHHH-hhcC-----CCceEEec
Q 045405          207 RVGDDVINTIR-AARA-----QSSWINIL  229 (240)
Q Consensus       207 ~v~~~~v~~l~-~~~~-----~~~~i~~~  229 (240)
                      +++++++++|+ +.++     ...++++.
T Consensus       163 ~v~~~~v~~l~~~~~~~~~~~~g~Iv~~~  191 (416)
T 1uij_A          163 HSEFEEINRVLFGEEEEQRQQEGVIVELS  191 (416)
T ss_dssp             TSCHHHHHHHHTCTTCGGGSBSSSEEECC
T ss_pred             CcCHHHHHhhhhccccccccCcceEEEeC
Confidence            99999999999 6652     34577754

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=99.91  E-value=2.1e-24  Score=204.94  Aligned_cols=153  Identities=20%  Similarity=0.309  Sum_probs=127.6

Q ss_pred             CcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe---------------
Q 045405           76 DVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT---------------  140 (240)
Q Consensus        76 ~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~---------------  140 (240)
                      ...|+. +.+...+.|.|+++|+++++++|+|||+++||||+ ++|++||++|+++++++.+++.               
T Consensus        24 ~se~G~-~e~~~~~~~~l~~~gv~~~r~~i~pggl~~Ph~~~-~~~i~yV~~G~g~vg~v~pgc~et~~~~~~~~~~~~~  101 (493)
T 2d5f_A           24 ESEGGL-IETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSP-YPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGS  101 (493)
T ss_dssp             ECSSEE-EEECCTTSHHHHHHTCEEEEEEECTTEEEEEEECS-SCEEEEEEECEEEEEECCTTCCCCEEECC--------
T ss_pred             ecCCcE-EEEeCCCChhhccCCEEEEEEEeCCCcEeCceecC-CCeEEEEEeCEEEEEEEeCCCcccccccccccccccc
Confidence            455774 55566777999999999999999999999999996 6899999999999999987631               


Q ss_pred             ----------EEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCC--------Cceecc---------------
Q 045405          141 ----------FFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNP--------GVSDSI---------------  187 (240)
Q Consensus       141 ----------~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~P--------g~~~~~---------------  187 (240)
                                ...+.|++||+++||+|++||++|.|+++++++++++..+.        ..+.++               
T Consensus       102 ~~~~~~~d~~qkv~~l~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~~~~~~~  181 (493)
T 2d5f_A          102 RSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQ  181 (493)
T ss_dssp             -----CSEEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESSSCCCCSCGGGTC---
T ss_pred             ccccccccccceEEEecCCCEEEECCCCcEEEEeCCCCCEEEEEEecCcCcccccccccceeeccCCccccchhhhhhcc
Confidence                      02458999999999999999999999999999999974322        233333               


Q ss_pred             --------------------chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCCCc-eEEecCCee
Q 045405          188 --------------------GTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSS-WINILDGRS  233 (240)
Q Consensus       188 --------------------~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~~~~-~i~~~~~~~  233 (240)
                                          .++|+   +|++++|++||+++.+++++|++.+..++ ||++.++.+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~nif~---gf~~e~La~aF~v~~~~v~kl~~~~~~~g~Iv~v~~~l~  245 (493)
T 2d5f_A          182 QQKSHGGRKQGQHQQQEEEGGSVLS---GFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLS  245 (493)
T ss_dssp             ------------------CCCCGGG---GSCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEECTTCCC
T ss_pred             cccccccccccccccccccccchhh---cCCHHHHHhHhCCCHHHHHHhhhcccCcccEEEeCCCcc
Confidence                                47998   89999999999999999999999888555 888776643

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=99.91  E-value=1.8e-24  Score=203.72  Aligned_cols=154  Identities=16%  Similarity=0.283  Sum_probs=130.4

Q ss_pred             cCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe-EE-----------
Q 045405           75 FDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT-FF-----------  142 (240)
Q Consensus        75 ~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~-~~-----------  142 (240)
                      ....||.+..++..+ |+|+++|++++|++++|||+++||||+ ++|++||++|+++++++.+++. .|           
T Consensus        21 ~~se~G~~e~w~~~~-~~L~~~gvs~~r~~i~p~Gl~lPh~~~-a~e~~~V~~G~g~~G~v~pgc~et~~~~~~~~~~~~   98 (466)
T 3kgl_A           21 LKAEAGRIEVWDHHA-PQLRCSGVSFVRYIIESKGLYLPSFFS-TAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGG   98 (466)
T ss_dssp             EEETTEEEEECCTTS-HHHHHHTEEEEEEEECTTEEEEEEEES-SCEEEEEEECEEEEEEECTTCCCCEEECCSSCCCC-
T ss_pred             eeCCCcEEEEECCCC-hhhccCCeEEEEEEECCCCEeCCeeCC-CCeEEEEEeCeEEEEEecCCCcchhhcccccccccc
Confidence            357788788887665 999999999999999999999999996 8999999999999999988542 11           


Q ss_pred             -----------------------------------------------EEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405          143 -----------------------------------------------SKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus       143 -----------------------------------------------~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                                                                     ...|++||+++||+|.+||++|.|+++++++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g~e~L~~l~~  178 (466)
T 3kgl_A           99 SPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSV  178 (466)
T ss_dssp             ----------------------------------------CCEEESCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceeeccccCCCEEEECCCCcEEEEeCCCCcEEEEEE
Confidence                                                           148999999999999999999999999999999


Q ss_pred             EeCCCC--------Cceecc------------------chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCCC-ceEEe
Q 045405          176 FNTQNP--------GVSDSI------------------GTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQS-SWINI  228 (240)
Q Consensus       176 ~~s~~P--------g~~~~~------------------~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~~~-~~i~~  228 (240)
                      ++..|+        ..+.++                  .++|+   +|+.++|++||+++.+++++|+..+..+ .||++
T Consensus       179 ~d~~n~~nQld~~~~~F~LaG~~~~~~~~~~~~~~~~~~ni~s---GF~~e~La~Af~v~~e~~~kL~~~q~~~G~Iv~v  255 (466)
T 3kgl_A          179 LDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILN---GFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRV  255 (466)
T ss_dssp             EESSSTTCCSCSSCCEEESSCCBTTCCTTSTTCTTCCBCCGGG---GSCHHHHHHHHTSCHHHHHHHTCTTCCSCSEEEC
T ss_pred             EcCCCcccccCCceeeeEecCCCccccccccccccccCCCccc---cCCHHHHHHHhCCCHHHHHHHhccccCceeEEEe
Confidence            976543        334443                  37998   8999999999999999999999988744 58888


Q ss_pred             cCCee
Q 045405          229 LDGRS  233 (240)
Q Consensus       229 ~~~~~  233 (240)
                      .++.+
T Consensus       256 ~~~l~  260 (466)
T 3kgl_A          256 QGPFS  260 (466)
T ss_dssp             CSCCC
T ss_pred             cCccc
Confidence            75543

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=99.91  E-value=2e-24  Score=201.43  Aligned_cols=151  Identities=15%  Similarity=0.239  Sum_probs=120.0

Q ss_pred             CCeeeecCCCCCccCcCCceEEEec-----ccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEc
Q 045405           62 DDFFTDFSKDPTTFDVFKRAVTFGD-----VFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVT  136 (240)
Q Consensus        62 ~df~f~l~~~~~~~~~~G~~v~~~~-----~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~  136 (240)
                      +.|+|..++-.......+|.+..+.     ...+|+|+  ++++++++++|||+.+|| |++|+|++||++|++++++++
T Consensus         5 ~p~~f~~~~f~~~~~se~G~i~~l~~f~~~s~~l~~l~--~~~l~~~~l~p~gl~~Ph-h~~A~ei~yV~~G~g~~g~V~   81 (418)
T 3s7i_A            5 NPFYFPSRRFSTRYGNQNGRIRVLQRFDQRSRQFQNLQ--NHRIVQIEAKPNTLVLPK-HADADNILVIQQGQATVTVAN   81 (418)
T ss_dssp             CTTEECGGGEEEEEECSSEEEEEECCHHHHCGGGGGGT--TCEEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEEC
T ss_pred             CCcccccccccceEEcCCcEEEEecccCCcchhccccc--ceEEEEEEecCCceeeee-eCCCCeEEEEEEeeEEEEEEe
Confidence            4566643331123356778888884     24566666  678889999999999999 889999999999999999999


Q ss_pred             cCCeEEEEEECCCCEEEeCCCCeEEEEecCCC-CEEEEEE-EeCCCCCceec--------cchhhcCCCCCCHHHHHhhc
Q 045405          137 TNNTFFSKVLTPGKVFLIPRALVHFQLNVGNE-PATFIPI-FNTQNPGVSDS--------IGTLFDTTPPVPNEVLTKSF  206 (240)
Q Consensus       137 ~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~-~a~~i~~-~~s~~Pg~~~~--------~~~lf~s~~~~p~~vla~af  206 (240)
                      +++ .+.++|++||+++||+|.+||++|.|+. .++++++ +++++||.+..        ..++|+   +||++||+++|
T Consensus        82 ~~~-~~~~~l~~GDv~~~P~G~~h~~~N~g~~~~l~i~~l~~~s~~pg~~~~f~laG~~~~~s~~~---gf~~evLa~af  157 (418)
T 3s7i_A           82 GNN-RKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPVNTPGQFEDFFPASSRDQSSYLQ---GFSRNTLEAAF  157 (418)
T ss_dssp             SSC-EEEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEECSSCCSSCCCGGG---GSCHHHHHHHH
T ss_pred             cCC-EEEEEecCCCEEEECCCCeEEEEecCCCccEEEEEeecCcCCCCccceeeccCCcchhHHhh---cCCHHHHHHHH
Confidence            854 4589999999999999999999998754 5666653 46777876432        136888   79999999999


Q ss_pred             CCCHHHHHHHHhh
Q 045405          207 RVGDDVINTIRAA  219 (240)
Q Consensus       207 ~v~~~~v~~l~~~  219 (240)
                      +++.+++++|+..
T Consensus       158 ~v~~~~v~kl~~~  170 (418)
T 3s7i_A          158 NAEFNEIRRVLLE  170 (418)
T ss_dssp             TSCHHHHHHHTTS
T ss_pred             CcCHHHHHhhhcc
Confidence            9999999999844

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.91  E-value=3.7e-24  Score=203.58  Aligned_cols=152  Identities=16%  Similarity=0.248  Sum_probs=126.8

Q ss_pred             CcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeE--------------
Q 045405           76 DVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF--------------  141 (240)
Q Consensus        76 ~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~--------------  141 (240)
                      ...||.+.. ...+.|+|+|+|+++++++|+|||+.+||||+ ++|++||++|+++++++++++..              
T Consensus        27 ~se~G~~e~-~~~~~~~l~~~gvs~~r~~i~p~gl~lPh~~~-a~~~~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~  104 (510)
T 3c3v_A           27 ESEGGYIET-WNPNNQEFECAGVALSRLVLRRNALRRPFYSN-APQEIFIQQGRGYFGLIFPGCPSTYEEPAQQGRRYQS  104 (510)
T ss_dssp             EETTEEEEE-CCTTSHHHHHHTCEEEEEEECTTEEEEEEECS-SCEEEEEEECCEEEEEECTTCCCCEEEECCC------
T ss_pred             ccCCceEEE-eCCCCcccccCcEEEEEEEECCCCCccceecC-CCeEEEEEeCEEEEEEEeCCCcccccccccccccccc
Confidence            567775444 55666999999999999999999999999995 79999999999999999986410              


Q ss_pred             ---------------------EEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCC--------Cceecc-----
Q 045405          142 ---------------------FSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNP--------GVSDSI-----  187 (240)
Q Consensus       142 ---------------------~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~P--------g~~~~~-----  187 (240)
                                           ..+.|++||+++||+|++||++|.|++++++|++++..|+        ..+.++     
T Consensus       105 ~~~~~~~~~~~~~~~~~d~~qkv~~v~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n~~nqld~~~r~F~LaG~~~~  184 (510)
T 3c3v_A          105 QRPPRRLQEEDQSQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNNNDNQLDQFPRRFNLAGNHEQ  184 (510)
T ss_dssp             --------------CEEEEESCCEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTBTTCCSCSCCCCEESSCCCCC
T ss_pred             ccccccccccccccccccccceEEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCCcccccccccceeEecCCccc
Confidence                                 1268999999999999999999999999999999986553        222222     


Q ss_pred             -------------------------------------------------------chhhcCCCCCCHHHHHhhcCCC-HH
Q 045405          188 -------------------------------------------------------GTLFDTTPPVPNEVLTKSFRVG-DD  211 (240)
Q Consensus       188 -------------------------------------------------------~~lf~s~~~~p~~vla~af~v~-~~  211 (240)
                                                                             .++|+   +|++++|+++|+++ ++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~s---gF~~~~La~af~v~~~~  261 (510)
T 3c3v_A          185 EFLRYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEHEGGNIFS---GFTPEFLAQAFQVDDRQ  261 (510)
T ss_dssp             TTGGGCC------------------------------------------------CCTGG---GSCHHHHHHHHTCCCHH
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccee---cCCHHHHHHHhCCCHHH
Confidence                                                                   36998   89999999999999 99


Q ss_pred             HHHHHHhhcC---CCceEEecCCe
Q 045405          212 VINTIRAARA---QSSWINILDGR  232 (240)
Q Consensus       212 ~v~~l~~~~~---~~~~i~~~~~~  232 (240)
                      ++++|+....   ...||++.++.
T Consensus       262 ~~~~l~~~~~~~~~g~Iv~v~~~l  285 (510)
T 3c3v_A          262 IVQNLRGENESEEQGAIVTVRGGL  285 (510)
T ss_dssp             HHHHHTTTTCCTTSCSEEECTTCC
T ss_pred             HHHHhhccccccccccEEEeCCcc
Confidence            9999998776   44688876553

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=99.91  E-value=3.1e-24  Score=203.74  Aligned_cols=156  Identities=15%  Similarity=0.269  Sum_probs=130.0

Q ss_pred             ccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe-EE----------
Q 045405           74 TFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT-FF----------  142 (240)
Q Consensus        74 ~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~-~~----------  142 (240)
                      .....||....++ .++|+|+|+|++++|++|.|+|+++||||+ ++|++||++|++.++++.|++. .|          
T Consensus        25 ~i~se~G~~e~w~-~~~p~l~~~Gvs~~R~~i~p~Gl~lPh~~~-a~el~yV~qG~g~~G~v~Pgcpet~~~~~~~~~~~  102 (531)
T 3fz3_A           25 RIQAEAGQIETWN-FNQGDFQCAGVAASRITIQRNGLHLPSYSN-APQLIYIVQGRGVLGAVFSGCPETFEESQQSSQQG  102 (531)
T ss_dssp             EEEETTEEEEECC-TTSHHHHHHTEEEEEEEECTTEEEEEEEES-SCEEEEEEECEEEEEECCTTCCCCEECCCC-----
T ss_pred             hcccCCceEEEeC-CCChhhccCcceEEEEEecCCCEeCCccCC-CCeEEEEEECcEEEEEEcCCCcccccccccccccc
Confidence            3467788666665 679999999999999999999999999996 9999999999999999988531 11          


Q ss_pred             ----------------------------------------------------------------------EEEECCCCEE
Q 045405          143 ----------------------------------------------------------------------SKVLTPGKVF  152 (240)
Q Consensus       143 ----------------------------------------------------------------------~~~l~~GDv~  152 (240)
                                                                                            ...+++||++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~vr~GDvi  182 (531)
T 3fz3_A          103 RQQEQEQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKTRRIREGDVV  182 (531)
T ss_dssp             --------------------------------------------------------------CCSCEESCCEEEETTEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccceeeecccCCcEE
Confidence                                                                                  2478999999


Q ss_pred             EeCCCCeEEEEecCCCCEEEEEEEeCCCC--------Cceec--------------------------------------
Q 045405          153 LIPRALVHFQLNVGNEPATFIPIFNTQNP--------GVSDS--------------------------------------  186 (240)
Q Consensus       153 v~P~G~~H~~~N~G~~~a~~i~~~~s~~P--------g~~~~--------------------------------------  186 (240)
                      ++|+|++||++|.|+++++++++++..|.        ..+.+                                      
T Consensus       183 aiPaG~~~w~yN~G~~~l~iv~~~Dt~n~~NQld~~~r~F~LAGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (531)
T 3fz3_A          183 AIPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAGNPENEFNQQGQSQPRQQGEQGRPGQHQQPFGRPRQQ  262 (531)
T ss_dssp             EECTTCCEEEECCSSSCEEEEEEEETTCTTCCSCSSCCEEESSSCCCCTTCC----------------------------
T ss_pred             EECCCCeEEEEeCCCceEEEEEEEccccccccCCCccceeEEcCCCcccccccccccccccccccccccccccccccchh
Confidence            99999999999999999999999975432        12222                                      


Q ss_pred             -----cchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcC-CCceEEecCCeee
Q 045405          187 -----IGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARA-QSSWINILDGRSI  234 (240)
Q Consensus       187 -----~~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~-~~~~i~~~~~~~~  234 (240)
                           ..++|+   +|+.++|++||+++.++++||+...+ ...||++.++.++
T Consensus       263 ~~~~~~~nifs---GFs~e~La~A~~v~~~~a~kLq~~~~~rg~IVrv~~~l~~  313 (531)
T 3fz3_A          263 EQQGNGNNVFS---GFNTQLLAQALNVNEETARNLQGQNDNRNQIIQVRGNLDF  313 (531)
T ss_dssp             ----CCSSGGG---GSCHHHHHHHHTSCHHHHHHHHTSSCCSCSEEECSSSCCC
T ss_pred             hhcccCCCeee---cCCHHHHHHHHCCCHHHHHHHhcccccCceEEEecCCCcc
Confidence                 137999   89999999999999999999998877 4558888876654

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.91  E-value=1.5e-23  Score=190.54  Aligned_cols=158  Identities=16%  Similarity=0.239  Sum_probs=139.2

Q ss_pred             CCCCCCCCeee-ecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEE
Q 045405           56 ASNVTSDDFFT-DFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGL  134 (240)
Q Consensus        56 ~~~v~~~df~f-~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~  134 (240)
                      +.....++|+| .+..++ ..+..|++++.+...++|+++  ++++.+++++||+..++|||+++.|++||++|++++.+
T Consensus       194 ~~~~~~~~~~~~~~~~~~-~~~~~gg~~~~~~~~~~~~~~--~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v  270 (361)
T 2vqa_A          194 QTAKIEVPHTHNLLGQQP-LVSLGGNELRLASAKEFPGSF--NMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTV  270 (361)
T ss_dssp             CCCBCCSCCEEECTTSCC-SEEETTEEEEEECTTTCTTST--TCEEEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEE
T ss_pred             cCCCCCcceEeccccCCC-cccCCCceEEEEehhhCcCcc--cceEEEEEECCCcccccccCCCCCEEEEEEeCEEEEEE
Confidence            44566789988 454444 446788999999999999987  57889999999999999999988999999999999999


Q ss_pred             EccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceeccchhhcCCCCCCHHHHHhhcCCCHHHHH
Q 045405          135 VTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVIN  214 (240)
Q Consensus       135 v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~~~lf~s~~~~p~~vla~af~v~~~~v~  214 (240)
                      ++++|+..++.+++||++++|+|..|++.|.|+++++++++++.++++...+++ +++   ++|++||+++|++++++++
T Consensus       271 ~~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~~~~~~~~-~~~---~~~~~vl~~~f~~~~~~~~  346 (361)
T 2vqa_A          271 FASEGKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQSIDLST-WLA---SNPSSVLGNTFQISPELTK  346 (361)
T ss_dssp             ECSTTCEEEEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSSCCCEEHHH-HHH---TSCHHHHHHHHTCCHHHHT
T ss_pred             EcCCCcEEEEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCCcceeeHHH-Hhh---hCCHHHHHHHHCcCHHHHH
Confidence            887777667899999999999999999999999999999999999999888885 677   6999999999999999999


Q ss_pred             HHHhhc
Q 045405          215 TIRAAR  220 (240)
Q Consensus       215 ~l~~~~  220 (240)
                      +|++..
T Consensus       347 ~l~~~~  352 (361)
T 2vqa_A          347 KLPVQD  352 (361)
T ss_dssp             TSCCSC
T ss_pred             hhhccC
Confidence            998553

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.87  E-value=3e-21  Score=175.36  Aligned_cols=151  Identities=19%  Similarity=0.262  Sum_probs=129.5

Q ss_pred             CeeeecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEE
Q 045405           63 DFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFF  142 (240)
Q Consensus        63 df~f~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~  142 (240)
                      .++|.+....+. ...||.++.++..++|.+.  ++++.++++.||+..++|||+++.|++||++|++++++++++|+..
T Consensus        20 ~~~~~~~~~~~~-~~~~G~~~~~~~~~~p~~~--~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~   96 (361)
T 2vqa_A           20 AFTYAFSKTPLV-LYDGGTTKQVGTYNFPVSK--GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE   96 (361)
T ss_dssp             CSEECGGGSCCE-EETTEEEEEESTTTCTTCC--SCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE
T ss_pred             ceEEEcccCCce-ecCCceEEEeChhhCcccc--ceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE
Confidence            377765554444 3578889999999999988  5799999999999999999987899999999999999998877444


Q ss_pred             EEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCC---ceeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 045405          143 SKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPG---VSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAA  219 (240)
Q Consensus       143 ~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg---~~~~~~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~  219 (240)
                      .+.|++||++++|+|..|++.|.|+++++++.+++..++.   .+.. .++|+   ++|.++|+++|+++.+.++++++.
T Consensus        97 ~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v~~~~~~~~~~~~~~-~~~~~---~~p~~vLa~~~~v~~~~~~~l~~~  172 (361)
T 2vqa_A           97 IADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGTFSEGATFSV-TDWLS---HTPIAWVEENLGWTAAQVAQLPKK  172 (361)
T ss_dssp             EEEEETTEEEEECTTCEEEEEECSSSCEEEEEEESSTTCCTTSSEEH-HHHHH---TSCHHHHHHHHTCCHHHHTTSCSS
T ss_pred             EEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCCccccceecH-hHHHH---hCCHHHHHHHhCcCHHHHHhcccc
Confidence            6899999999999999999999999999999999877664   3444 46788   799999999999999999999865


Q ss_pred             c
Q 045405          220 R  220 (240)
Q Consensus       220 ~  220 (240)
                      .
T Consensus       173 ~  173 (361)
T 2vqa_A          173 Q  173 (361)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.82  E-value=3.7e-19  Score=163.14  Aligned_cols=155  Identities=17%  Similarity=0.262  Sum_probs=129.3

Q ss_pred             CCCCeeeecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC
Q 045405           60 TSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN  139 (240)
Q Consensus        60 ~~~df~f~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g  139 (240)
                      ....|+|.+...... ...|+.++.+....++..+  ++++.+++++||+..++|||+.+.|++||++|++++.+.+++|
T Consensus       222 ~~~~~v~~~~~~~~~-~~~~g~~~~~~~~~~~~~~--~~~~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g  298 (385)
T 1j58_A          222 VPYPFTYRLLEQEPI-ESEGGKVYIADSTNFKVSK--TIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDG  298 (385)
T ss_dssp             CSSCSEEEGGGSCCE-ECSSEEEEEESTTTSTTCC--SCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETT
T ss_pred             CCCCeeeecccCCCe-eCCCceEEEeecccCCccc--ceEEEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCC
Confidence            345677855444334 3456777888888887654  6899999999999999999988899999999999999986666


Q ss_pred             eEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 045405          140 TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAA  219 (240)
Q Consensus       140 ~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~  219 (240)
                      +..++.+++||++++|+|..|++.|.|++++++++++....+....+.+ +++   .+|+++++++|+++++++++|++.
T Consensus       299 ~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~v~~~~~~~d~~~~~-~l~---~~~~~v~~~~f~~~~~~~~~l~~~  374 (385)
T 1j58_A          299 HARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQ-WLA---MLPETFVQAHLDLGKDFTDVLSKE  374 (385)
T ss_dssp             EEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEEESSSSCCCEEHHH-HHH---TSCHHHHHHHHTCCHHHHTTCCSS
T ss_pred             cEEEEEEcCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCccccCHHH-HHH---hCCHHHHHHHhCCCHHHHHhhhcc
Confidence            5457899999999999999999999999999999999877777766654 567   699999999999999999999876


Q ss_pred             cC
Q 045405          220 RA  221 (240)
Q Consensus       220 ~~  221 (240)
                      ..
T Consensus       375 ~~  376 (385)
T 1j58_A          375 KH  376 (385)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.80  E-value=1.8e-19  Score=165.14  Aligned_cols=148  Identities=20%  Similarity=0.258  Sum_probs=125.2

Q ss_pred             eeeecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEE
Q 045405           64 FFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFS  143 (240)
Q Consensus        64 f~f~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~  143 (240)
                      ++|.+...... ...||+++.++...+|.++  ++++.++++.||+..++|||+ +.|++||++|++++++++++|+.+.
T Consensus        48 ~~~~~~~~~~~-~~~~G~~~~~~~~~lp~~~--~~~~~~~~l~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~g~~~~  123 (385)
T 1j58_A           48 MKFSFSDTHNR-LEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHK-EAEWAYMIYGSARVTIVDEKGRSFI  123 (385)
T ss_dssp             CEECGGGSCCE-EETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEES-SCEEEEEEEEEEEEEEECTTSCEEE
T ss_pred             eEEEcccCCcc-ccCCcEEEEeccccCcccC--ceEEEEEEECCCCCCCCccCC-hheEEEEEeeeEEEEEEeCCCcEEE
Confidence            77755544333 3578889999999999988  789999999999999999998 7999999999999999988788666


Q ss_pred             EEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCcee--ccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhh
Q 045405          144 KVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSD--SIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAA  219 (240)
Q Consensus       144 ~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~--~~~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~  219 (240)
                      +.+++||++++|+|..|++.|.+ ++++++.+|+...+....  ...++|+   .+|.++|+++|+++.++++++.+.
T Consensus       124 ~~l~~GD~~~ip~g~~H~~~n~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~p~evla~~~~vs~~~~~~l~~~  197 (385)
T 1j58_A          124 DDVGEGDLWYFPSGLPHSIQALE-EGAEFLLVFDDGSFSENSTFQLTDWLA---HTPKEVIAANFGVTKEEISNLPGK  197 (385)
T ss_dssp             EEEETTEEEEECTTCCEEEEEEE-EEEEEEEEESCTTCCGGGEEEHHHHHH---TSCHHHHHHHHTCCTGGGTTSCSS
T ss_pred             EEeCCCCEEEECCCCeEEEEECC-CCEEEEEEECCCCccccchhhhhhhhh---cccHHHHHHHhCCCHHHHHhcccc
Confidence            79999999999999999999987 458888889877765432  1246888   799999999999999999888653

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=99.74  E-value=8.3e-19  Score=127.86  Aligned_cols=74  Identities=18%  Similarity=0.210  Sum_probs=65.0

Q ss_pred             eec-CCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe
Q 045405           66 TDF-SKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT  140 (240)
Q Consensus        66 f~l-~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~  140 (240)
                      |+| ++.|.++|..|. ++.+++.++|+|+++|+|++|+++.||++.+|||||+|+|++||++|++++++++++|+
T Consensus         4 fnl~~~~p~~~n~~G~-~~~~~~~~~P~Ln~lgls~~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~V~~~g~   78 (79)
T 1dgw_X            4 FNLRSRDPIYSNNYGK-LYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQ   78 (79)
T ss_dssp             EETTSSCCSEECSSEE-EEEECTTTCHHHHTTTEEEEEEEECTTCEEEEEEESSCEEEEEEEESCEEEEEEEEC--
T ss_pred             cccccCCCCccCCCCc-EEEEChhhCcccCcCCcceEEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEEecCCCC
Confidence            543 455677777776 59999999999999999999999999999999999999999999999999999988764

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.53  E-value=5.4e-14  Score=108.56  Aligned_cols=84  Identities=23%  Similarity=0.322  Sum_probs=73.0

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ++.+.++.++||+..++|||+...|++||++|++++.+.  +++  ...+++||++++|+|..|++.|.+++++++++++
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~--~~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~  113 (125)
T 3h8u_A           38 DSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG--NGI--VTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVV  113 (125)
T ss_dssp             SCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS--TTC--EEEEETTEEEEECTTCCCEEEECSSSCEEEEEEE
T ss_pred             CEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC--CCe--EEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEE
Confidence            578899999999999999998779999999999998762  355  6799999999999999999999999999999998


Q ss_pred             eCCCCCce
Q 045405          177 NTQNPGVS  184 (240)
Q Consensus       177 ~s~~Pg~~  184 (240)
                      ....+++.
T Consensus       114 ~p~~~~~~  121 (125)
T 3h8u_A          114 APGNAGFA  121 (125)
T ss_dssp             ESTTCCCC
T ss_pred             CCCcccch
Confidence            77666654

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=99.48  E-value=9.3e-14  Score=120.64  Aligned_cols=82  Identities=17%  Similarity=0.155  Sum_probs=70.9

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEE--------Ecc-------CCeEEEEEECCCCEEEeCCCCe
Q 045405           95 TQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGL--------VTT-------NNTFFSKVLTPGKVFLIPRALV  159 (240)
Q Consensus        95 ~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~--------v~~-------~g~~~~~~l~~GDv~v~P~G~~  159 (240)
                      +.++++.+++++||+..++|+|++..|++||++|++++.+        .+.       +++.+...+++||++++|+|.+
T Consensus        40 ~~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~  119 (239)
T 2xlg_A           40 DIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYM  119 (239)
T ss_dssp             TEEEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEE
T ss_pred             CCCEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCC
Confidence            3468899999999999999999988999999999999987        322       1345578999999999999999


Q ss_pred             EEEEecCCCCEEE-EEEE
Q 045405          160 HFQLNVGNEPATF-IPIF  176 (240)
Q Consensus       160 H~~~N~G~~~a~~-i~~~  176 (240)
                      |.+.|.+++++++ +..+
T Consensus       120 H~~~N~~~~~~~~~l~~~  137 (239)
T 2xlg_A          120 HGFVNPTDKTLPIVFVWM  137 (239)
T ss_dssp             EEEECCSSSCEEEEEEEE
T ss_pred             EEEEeCCCCCEEEEEEEE
Confidence            9999999999888 6666

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=99.46  E-value=6e-13  Score=107.58  Aligned_cols=79  Identities=22%  Similarity=0.238  Sum_probs=70.7

Q ss_pred             ceEEEEEEEcCCc-ccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCC-CeEEEEecCCCCEEEEE
Q 045405           97 GVALFRIDLDVGG-INPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRA-LVHFQLNVGNEPATFIP  174 (240)
Q Consensus        97 gls~~~v~l~pGg-~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G-~~H~~~N~G~~~a~~i~  174 (240)
                      ++.+.++.++||+ ..++|||+...|++||++|++++.+   +++  .+.+++||++++|+| ..|++.|.|+++++++.
T Consensus        45 ~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~--~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~  119 (162)
T 3l2h_A           45 HMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM---END--QYPIAPGDFVGFPCHAAAHSISNDGTETLVCLV  119 (162)
T ss_dssp             SEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTSCCEEEECCSSSCEEEEE
T ss_pred             eEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE---CCE--EEEeCCCCEEEECCCCceEEeEeCCCCCEEEEE
Confidence            6889999999999 5899999778999999999999987   355  689999999999997 99999999999999988


Q ss_pred             EEeCCC
Q 045405          175 IFNTQN  180 (240)
Q Consensus       175 ~~~s~~  180 (240)
                      +.....
T Consensus       120 v~~p~~  125 (162)
T 3l2h_A          120 IGQRLD  125 (162)
T ss_dssp             EEECCS
T ss_pred             EECCCC
Confidence            876544

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=99.46  E-value=6.7e-13  Score=107.51  Aligned_cols=114  Identities=18%  Similarity=0.140  Sum_probs=83.3

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccC----CeEEEEEECCCCEEEeCCCCeEEEEecC-CCCEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN----NTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPAT  171 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~----g~~~~~~l~~GDv~v~P~G~~H~~~N~G-~~~a~  171 (240)
                      ++.+.++.++||+..++|+|+ ..|++||++|++++.+.+.+    ++...+.+++||++++|+|..|++.|.+ +++++
T Consensus        40 ~~~~~~~~~~pg~~~~~H~H~-~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~  118 (163)
T 1lr5_A           40 EVEVWLQTISPGQRTPIHRHS-CEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQ  118 (163)
T ss_dssp             SEEEEEEEECTTCBCCEEEES-SCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEE
T ss_pred             cEEEEEEEECCCCcCCCeECC-CCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEECCCCcEEeEeCCCCCCEE
Confidence            588999999999999999996 58999999999999886421    1112789999999999999999999999 89999


Q ss_pred             EEEEEeCCCCCceeccchhhcCCCCCCHHHHHhhcCCCHHHHHH
Q 045405          172 FIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINT  215 (240)
Q Consensus       172 ~i~~~~s~~Pg~~~~~~~lf~s~~~~p~~vla~af~v~~~~v~~  215 (240)
                      ++.++........... .+..   .+....+...+.++.+.+++
T Consensus       119 ~l~i~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~  158 (163)
T 1lr5_A          119 VLVIISRPPAKIFLYD-DWSM---PHTAAVLKFPFVWDEDCFEA  158 (163)
T ss_dssp             EEEEEESSSCCEEEES-STTS---CGGGCEEESSCTTTHHHHHH
T ss_pred             EEEEECCCCccccccc-cccc---CCcCccceeccccccccccc
Confidence            9988765433322222 2332   23333444445566665554

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=99.44  E-value=9.8e-13  Score=96.89  Aligned_cols=78  Identities=19%  Similarity=0.233  Sum_probs=69.4

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405           95 TQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus        95 ~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      +.++.+.++.++||+..++|+|+...|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.+++++.++.
T Consensus        25 ~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~   99 (105)
T 1v70_A           25 SERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE--EALLAPGMAAFAPAGAPHGVRNESASPALLLV   99 (105)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTSCEEEECCSSSCEEEEE
T ss_pred             CCceEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            3468899999999999999999877899999999999887   355  68999999999999999999999999999887


Q ss_pred             EEe
Q 045405          175 IFN  177 (240)
Q Consensus       175 ~~~  177 (240)
                      ++.
T Consensus       100 v~~  102 (105)
T 1v70_A          100 VTA  102 (105)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            765

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=99.43  E-value=5.3e-13  Score=99.22  Aligned_cols=76  Identities=21%  Similarity=0.245  Sum_probs=66.9

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-eEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      .+.+.+++++||+..++|.|+...|++||++|++++.+.  ++ +  ...+++||++++|+|..|...|.|+++++++.+
T Consensus        17 ~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~--~g~~--~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~v   92 (97)
T 2fqp_A           17 RVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETP--EGSV--TSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEI   92 (97)
T ss_dssp             SEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEET--TEEE--EEEECTTCCEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             eEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeC--CCCE--EEEEcCCCEEEeCCCCcccCEeCCCCcEEEEEE
Confidence            688999999999999999998755799999999998873  22 3  679999999999999999999999999988765


Q ss_pred             E
Q 045405          176 F  176 (240)
Q Consensus       176 ~  176 (240)
                      -
T Consensus        93 ~   93 (97)
T 2fqp_A           93 E   93 (97)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=99.41  E-value=6.4e-12  Score=105.04  Aligned_cols=82  Identities=23%  Similarity=0.340  Sum_probs=73.4

Q ss_pred             ceEEEEEEEcCCcc------cCCccCC--CCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCC
Q 045405           97 GVALFRIDLDVGGI------NPPHTHP--RGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNE  168 (240)
Q Consensus        97 gls~~~v~l~pGg~------~~pH~Hp--~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~  168 (240)
                      ++.+.++.++||+.      .++|+|+  +..|++||++|++.+.+.+..|+.+...+++||++++|+|..|++.|.|++
T Consensus        66 ~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip~g~~H~~~N~g~~  145 (190)
T 1x82_A           66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDE  145 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSSS
T ss_pred             CeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEECCCCeEEEEECCcc
Confidence            68888889999998      7899998  457999999999999998766776778999999999999999999999999


Q ss_pred             CEEEEEEEeC
Q 045405          169 PATFIPIFNT  178 (240)
Q Consensus       169 ~a~~i~~~~s  178 (240)
                      ++++++++..
T Consensus       146 ~~~~l~v~~~  155 (190)
T 1x82_A          146 PFIFLAIYPA  155 (190)
T ss_dssp             CEEEEEEEET
T ss_pred             cEEEEEEECC
Confidence            9999887754

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=99.39  E-value=3.1e-12  Score=102.23  Aligned_cols=83  Identities=22%  Similarity=0.273  Sum_probs=70.7

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe-EEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT-FFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~-~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      ++.+.++.++||+..++|||+...|++||++|++++.+.+.... .++..+++||++++|+|..|.+.|.+++++.++++
T Consensus        42 ~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l~i  121 (148)
T 2oa2_A           42 HLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLYSI  121 (148)
T ss_dssp             SCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             ceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcEEEEECCCCCEEEEEE
Confidence            57888999999999999999877799999999999998643211 12379999999999999999999999999988887


Q ss_pred             EeCC
Q 045405          176 FNTQ  179 (240)
Q Consensus       176 ~~s~  179 (240)
                      +...
T Consensus       122 ~~~~  125 (148)
T 2oa2_A          122 YAPP  125 (148)
T ss_dssp             EESC
T ss_pred             ECCC
Confidence            7543

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=99.39  E-value=3.2e-12  Score=104.22  Aligned_cols=80  Identities=21%  Similarity=0.256  Sum_probs=71.1

Q ss_pred             ceEEEEEEEcCCccc-CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCC--CeEEEEecCCCCEEEE
Q 045405           97 GVALFRIDLDVGGIN-PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRA--LVHFQLNVGNEPATFI  173 (240)
Q Consensus        97 gls~~~v~l~pGg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G--~~H~~~N~G~~~a~~i  173 (240)
                      .+.+.+++++||+.. ++|||+...|++||++|++++.+.   ++  .+.|++||++++|+|  ..|.+.|.++++++++
T Consensus        42 ~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~---~~--~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l  116 (163)
T 3i7d_A           42 QFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD---QG--EHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFL  116 (163)
T ss_dssp             SEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET---TE--EEEECTTCEEEECTTCCCCBEEECCSSSCEEEE
T ss_pred             eEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC---CE--EEEeCCCCEEEECCCCCcceEEEECCCCCEEEE
Confidence            689999999999965 899998778999999999999873   55  689999999999999  9999999999999999


Q ss_pred             EEEeCCCC
Q 045405          174 PIFNTQNP  181 (240)
Q Consensus       174 ~~~~s~~P  181 (240)
                      .+......
T Consensus       117 ~v~~p~~~  124 (163)
T 3i7d_A          117 VVGTRTPT  124 (163)
T ss_dssp             EEEECCSC
T ss_pred             EEECCCCC
Confidence            88875543

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=99.38  E-value=4.3e-12  Score=95.10  Aligned_cols=78  Identities=17%  Similarity=0.224  Sum_probs=69.2

Q ss_pred             cceEEEEEEEcCCcccCCc--cCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           96 QGVALFRIDLDVGGINPPH--THPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH--~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      .++.+.++.++||+..++|  +|++..|++||++|++++.+   +++  .+.+++||++++|+|..|.+.|.++++++++
T Consensus        19 ~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~   93 (113)
T 2gu9_A           19 RQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DGH--TQALQAGSLIAIERGQAHEIRNTGDTPLKTV   93 (113)
T ss_dssp             TTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TTE--EEEECTTEEEEECTTCCEEEECCSSSCEEEE
T ss_pred             CcEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEcCCCCCEEEE
Confidence            3688999999999998888  99867999999999999887   355  6799999999999999999999999999988


Q ss_pred             EEEeC
Q 045405          174 PIFNT  178 (240)
Q Consensus       174 ~~~~s  178 (240)
                      .++..
T Consensus        94 ~v~~~   98 (113)
T 2gu9_A           94 NFYHP   98 (113)
T ss_dssp             EEEES
T ss_pred             EEECC
Confidence            87754

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=99.38  E-value=1.5e-11  Score=100.84  Aligned_cols=115  Identities=18%  Similarity=0.160  Sum_probs=84.2

Q ss_pred             CCCCCCeee-ecCCC---CCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEE
Q 045405           58 NVTSDDFFT-DFSKD---PTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVG  133 (240)
Q Consensus        58 ~v~~~df~f-~l~~~---~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~  133 (240)
                      -+..+++.| .+...   .......|...+.+..... +....++.+.++.++||+..++|||+ ..|++||++|++.+.
T Consensus        13 iv~~~~~~W~~~~~~~~~~~~~~~~g~~~~~L~~~~~-g~~~~~~~~~~~~l~pG~~~~~H~H~-~~E~~~Vl~G~~~~~   90 (167)
T 3ibm_A           13 VLRERDYRWEGTEEEAYKAEGTHFSGARRQTLVGRPA-GQEAPAFETRYFEVEPGGYTTLERHE-HTHVVMVVRGHAEVV   90 (167)
T ss_dssp             EECEETTEETTCCCC---------CCEEEEEEECTTT-TCCSSSEEEEEEEECTTCBCCCBBCS-SCEEEEEEESEEEEE
T ss_pred             eeecCCcccccceeeeccCCCCcCCCcEEEEEECCCC-CCCCCcEEEEEEEECCCCCCCCccCC-CcEEEEEEeCEEEEE
Confidence            445566667 33221   1111235555555544333 22234688999999999999999996 699999999999998


Q ss_pred             EEccCCeEEEEEECCCCEEEeCCCCeEEEEecC-CCCEEEEEEEeCC
Q 045405          134 LVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQ  179 (240)
Q Consensus       134 ~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G-~~~a~~i~~~~s~  179 (240)
                      +   +++  .+.+++||++++|+|..|.+.|.+ ++++.+++++...
T Consensus        91 i---~~~--~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~  132 (167)
T 3ibm_A           91 L---DDR--VEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSD  132 (167)
T ss_dssp             E---TTE--EEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred             E---CCE--EEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence            7   355  689999999999999999999999 9999999887643

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=99.38  E-value=2.5e-12  Score=101.04  Aligned_cols=85  Identities=21%  Similarity=0.354  Sum_probs=72.5

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ++.+.++.++||+..++|||+. .|++||++|++++.+.. +++  .+.+++||++++|+|..|.+.|.+++++.++.++
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~~-~e~~~vl~G~~~~~~~~-~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i~  113 (145)
T 3ht1_A           38 RFVLTEFEVSPNGSTPPHFHEW-EHEIYVLEGSMGLVLPD-QGR--TEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVA  113 (145)
T ss_dssp             SEEEEEEEEEEEEECCCEECSS-CEEEEEEEECEEEEEGG-GTE--EEEECTTCEEEECTTCCBEEECCTTCCEEEEEEE
T ss_pred             cEEEEEEEECCCCcCCCccCCC-ceEEEEEEeEEEEEEeE-CCE--EEEECCCCEEEECCCCeEEeEcCCCCCEEEEEEE
Confidence            6889999999999999999975 78889999999988211 355  6899999999999999999999999999999888


Q ss_pred             eCCCCCcee
Q 045405          177 NTQNPGVSD  185 (240)
Q Consensus       177 ~s~~Pg~~~  185 (240)
                      ....|....
T Consensus       114 ~~~~~~~~~  122 (145)
T 3ht1_A          114 PCERPPVRN  122 (145)
T ss_dssp             ESCCCCCEE
T ss_pred             CCCCCCeeE
Confidence            766665443

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=99.38  E-value=4.9e-13  Score=100.53  Aligned_cols=78  Identities=18%  Similarity=0.151  Sum_probs=67.7

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      -.+.+.|++++||+..++|+|+...|++||++|++++...  +++.....+++||++++|+|..|...|.|++++++|.+
T Consensus        15 ~~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~--d~~~~~~~l~~G~~~~ip~G~~H~~~N~g~~pl~~IeV   92 (98)
T 3lag_A           15 DEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAP--DGTRSLAQLKTGRSYARKAGVQHDVRNESTAEIVFLEI   92 (98)
T ss_dssp             SSEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEECT--TSCEECCCBCTTCCEEECTTCEEEEBCCSSSCEEEEEE
T ss_pred             CeEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeC--CCceEEEEecCCcEEEEcCCCcEECEECCCCeEEEEEE
Confidence            3588999999999999999999888999999999988753  34433567899999999999999999999999999876

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=99.33  E-value=4.8e-12  Score=104.74  Aligned_cols=80  Identities=20%  Similarity=0.327  Sum_probs=71.5

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      .|..+.+++++||+..++|.|+ ..|++||++|++++.+.+  ++  ++.|++||++ +|+|..|.+.|.|+++++++.+
T Consensus        77 ~G~~~~~v~l~PG~~~~~H~H~-~eE~~~VLeGel~l~ld~--ge--~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V  150 (172)
T 3es1_A           77 GGSVIRVVDMLPGKESPMHRTN-SIDYGIVLEGEIELELDD--GA--KRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFI  150 (172)
T ss_dssp             CSEEEEEEEECTTCBCCCBCCS-EEEEEEEEESCEEEECGG--GC--EEEECTTCEE-EECSCCBEEECCSSSCEEEEEE
T ss_pred             CCeEEEEEEECCCCCCCCeecC-ceEEEEEEeCEEEEEECC--Ce--EEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEE
Confidence            4789999999999999999995 489999999999998742  44  6799999999 9999999999999999999999


Q ss_pred             EeCCCC
Q 045405          176 FNTQNP  181 (240)
Q Consensus       176 ~~s~~P  181 (240)
                      +....|
T Consensus       151 ~~P~~p  156 (172)
T 3es1_A          151 LIEAPA  156 (172)
T ss_dssp             EEECCC
T ss_pred             EcCCCc
Confidence            987766

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=99.33  E-value=4.1e-12  Score=97.86  Aligned_cols=76  Identities=24%  Similarity=0.483  Sum_probs=67.8

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ++.+.++.++||+..++|+|+. .|++||++|++++.+   +++  .+.+++||++++|+|..|.+.|.++ ++.++.++
T Consensus        40 ~~~~~~~~~~pg~~~~~H~H~~-~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~~~~~-~~~~l~v~  112 (126)
T 4e2g_A           40 NLMLNWVRIEPNTEMPAHEHPH-EQAGVMLEGTLELTI---GEE--TRVLRPGMAYTIPGGVRHRARTFED-GCLVLDIF  112 (126)
T ss_dssp             SCEEEEEEECTTCEEEEECCSS-EEEEEEEEECEEEEE---TTE--EEEECTTEEEEECTTCCEEEECCTT-CEEEEEEE
T ss_pred             CeEEEEEEECCCCcCCCccCCC-ceEEEEEEeEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEECCC-CEEEEEEE
Confidence            6889999999999999999986 999999999999987   355  6899999999999999999999987 78888877


Q ss_pred             eCC
Q 045405          177 NTQ  179 (240)
Q Consensus       177 ~s~  179 (240)
                      ...
T Consensus       113 ~p~  115 (126)
T 4e2g_A          113 SPP  115 (126)
T ss_dssp             ESC
T ss_pred             CCC
Confidence            643

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.33  E-value=7.8e-12  Score=98.21  Aligned_cols=77  Identities=19%  Similarity=0.212  Sum_probs=68.1

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405           95 TQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus        95 ~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      +..+.+.++.++||+..++|+|++..|++||++|++++.+   +++  .+.|++||++++|+|..|.+.|.+++++++++
T Consensus        54 ~~~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~  128 (133)
T 1o4t_A           54 NKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NGK--DVPIKAGDVCFTDSGESHSIENTGNTDLEFLA  128 (133)
T ss_dssp             TSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEECTTCEEEEECCSSSCEEEEE
T ss_pred             CceEEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEE---CCE--EEEeCCCcEEEECCCCcEEeEECCCCCEEEEE
Confidence            3457788999999999999999766899999999999987   355  67999999999999999999999999998887


Q ss_pred             EE
Q 045405          175 IF  176 (240)
Q Consensus       175 ~~  176 (240)
                      +.
T Consensus       129 v~  130 (133)
T 1o4t_A          129 VI  130 (133)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=99.32  E-value=6.3e-12  Score=96.42  Aligned_cols=71  Identities=15%  Similarity=0.233  Sum_probs=62.0

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATF  172 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~  172 (240)
                      .++.+.++.++||+..++|||+. .|++||++|++++.+   +++  ++.+++||.+++|+|..|.+.|.++....+
T Consensus        34 ~~~~v~~~~l~~G~~~~~H~H~~-~e~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~  104 (114)
T 3fjs_A           34 HRLEVMRMVLPAGKQVGSHSVAG-PSTIQCLEGEVEIGV---DGA--QRRLHQGDLLYLGAGAAHDVNAITNTSLLV  104 (114)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSS-CEEEEEEESCEEEEE---TTE--EEEECTTEEEEECTTCCEEEEESSSEEEEE
T ss_pred             CCEEEEEEEECCCCccCceeCCC-cEEEEEEECEEEEEE---CCE--EEEECCCCEEEECCCCcEEEEeCCCcEEEE
Confidence            36889999999999999999976 799999999999987   355  689999999999999999999986544443

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=99.32  E-value=1.1e-11  Score=100.64  Aligned_cols=78  Identities=18%  Similarity=0.230  Sum_probs=70.2

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      ..+.+.++.++||+..++|||+. .|++||++|++++.+   +++  .+.+++||++++|+|..|.+.|.+++++.++++
T Consensus        42 ~~~~~~~~~l~pG~~~~~H~H~~-~E~~~Vl~G~~~v~v---~g~--~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i  115 (156)
T 3kgz_A           42 LACEWRYFEVDEGGYSTLERHAH-VHAVMIHRGHGQCLV---GET--ISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCV  115 (156)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSS-CEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             CcEEEEEEEECCCCccCceeCCC-cEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            46889999999999999999975 899999999999987   355  689999999999999999999999999999988


Q ss_pred             EeCC
Q 045405          176 FNTQ  179 (240)
Q Consensus       176 ~~s~  179 (240)
                      +...
T Consensus       116 ~~~~  119 (156)
T 3kgz_A          116 VNAA  119 (156)
T ss_dssp             EESS
T ss_pred             EeCC
Confidence            8643

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=99.31  E-value=4.3e-11  Score=90.67  Aligned_cols=75  Identities=24%  Similarity=0.351  Sum_probs=65.8

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ++.+.++.++||+..++|+|+ ..|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.+  ++.++.++
T Consensus        33 ~~~~~~~~~~pg~~~~~H~H~-~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~l~v~  104 (116)
T 2pfw_A           33 ELMAVKIWFDKGAEGYVHAHR-HSQVSYVVEGEFHVNV---DGV--IKVLTAGDSFFVPPHVDHGAVCPT--GGILIDTF  104 (116)
T ss_dssp             TEEEEEEEECTTEEEEEECCS-SEEEEEEEEECEEEEE---TTE--EEEECTTCEEEECTTCCEEEEESS--CEEEEEEE
T ss_pred             ceEEEEEEECCCCcCCcEECC-cceEEEEEeeEEEEEE---CCE--EEEeCCCCEEEECcCCceeeEeCC--CcEEEEEE
Confidence            478999999999999999997 6999999999999887   355  679999999999999999999987  67777777


Q ss_pred             eCC
Q 045405          177 NTQ  179 (240)
Q Consensus       177 ~s~  179 (240)
                      ...
T Consensus       105 ~p~  107 (116)
T 2pfw_A          105 SPA  107 (116)
T ss_dssp             ESC
T ss_pred             CCc
Confidence            544

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=99.31  E-value=5.2e-11  Score=97.72  Aligned_cols=77  Identities=16%  Similarity=0.185  Sum_probs=69.6

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      .++.+.+++++||+..++|||+. .|++||++|++++.+   +++  .+.+++||++++|+|..|.+.|.+++++.++++
T Consensus        51 ~~~~~~~~~l~pG~~~~~H~H~~-~E~~~Vl~G~~~~~v---~g~--~~~l~~GD~i~ip~g~~H~~~n~~~~~~~~l~i  124 (166)
T 3jzv_A           51 LTGELRYFEVGPGGHSTLERHQH-AHGVMILKGRGHAMV---GRA--VSAVAPYDLVTIPGWSWHQFRAPADEALGFLCM  124 (166)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSS-CEEEEEEEECEEEEE---TTE--EEEECTTCEEEECTTCCEEEECCTTSCEEEEEE
T ss_pred             CeEEEEEEEECCCCccCceeCCC-cEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            46888999999999999999975 899999999999887   356  689999999999999999999999999999988


Q ss_pred             EeC
Q 045405          176 FNT  178 (240)
Q Consensus       176 ~~s  178 (240)
                      +..
T Consensus       125 ~~~  127 (166)
T 3jzv_A          125 VNA  127 (166)
T ss_dssp             EES
T ss_pred             Ecc
Confidence            864

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=99.30  E-value=2.6e-11  Score=100.58  Aligned_cols=82  Identities=13%  Similarity=0.161  Sum_probs=68.3

Q ss_pred             CCccceEEEEEEEcCCcccC---CccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec-CCC
Q 045405           93 VNTQGVALFRIDLDVGGINP---PHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV-GNE  168 (240)
Q Consensus        93 l~~~gls~~~v~l~pGg~~~---pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~-G~~  168 (240)
                      ..+..+.+.+++++||+..+   +|+|+. .|++||++|++.+.+.+ ++....+.|++||.+++|++.+|.+.|. +++
T Consensus       112 ~~~~~~~~~~~~~~pg~~~~~~~~h~h~~-~E~~~Vl~G~~~~~~~~-~~~~~~~~l~~GD~~~~~~~~~H~~~n~~~~~  189 (198)
T 2bnm_A          112 KRAPSLVPLVVDVLTDNPDDAKFNSGHAG-NEFLFVLEGEIHMKWGD-KENPKEALLPTGASMFVEEHVPHAFTAAKGTG  189 (198)
T ss_dssp             TTSTTCEEEEEEECCCCGGGCCCCCCCSS-CEEEEEEESCEEEEESC-TTSCEEEEECTTCEEEECTTCCEEEEESTTSC
T ss_pred             CCCCcceEEEEEEcCCCCCcccccccCCC-eEEEEEEeeeEEEEECC-cCCcccEEECCCCEEEeCCCCceEEEecCCCC
Confidence            33446889999999999876   799976 89999999999998843 1111278999999999999999999999 999


Q ss_pred             CEEEEEEE
Q 045405          169 PATFIPIF  176 (240)
Q Consensus       169 ~a~~i~~~  176 (240)
                      ++++++++
T Consensus       190 ~~~~l~v~  197 (198)
T 2bnm_A          190 SAKLIAVN  197 (198)
T ss_dssp             CEEEEEEE
T ss_pred             CeEEEEEe
Confidence            99988765

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.28  E-value=5e-11  Score=95.40  Aligned_cols=77  Identities=25%  Similarity=0.353  Sum_probs=68.7

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEE-EEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFS-KVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~-~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      .++.+.++.++||+..++|+|+. .|++||++|++++.+.   ++  . +.+++||++++|+|..|++.|.+++++.+++
T Consensus        46 ~~~~~~~~~~~pg~~~~~H~H~~-~E~~~Vl~G~~~~~~~---~~--~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~  119 (147)
T 2f4p_A           46 FNTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQER---GK--PARILKKGDVVEIPPNVVHWHGAAPDEELVHIG  119 (147)
T ss_dssp             SSCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEET---TS--CCEEEETTCEEEECTTCCEEEEEBTTBCEEEEE
T ss_pred             CcEEEEEEEECCCCccCceECCC-ceEEEEEeCEEEEEEC---CE--EEEEECCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            36889999999999999999976 8999999999999873   44  4 6899999999999999999999999999888


Q ss_pred             EEeC
Q 045405          175 IFNT  178 (240)
Q Consensus       175 ~~~s  178 (240)
                      ++..
T Consensus       120 v~~~  123 (147)
T 2f4p_A          120 ISTQ  123 (147)
T ss_dssp             EECC
T ss_pred             EEcc
Confidence            7754

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=99.28  E-value=1.7e-11  Score=93.41  Aligned_cols=74  Identities=18%  Similarity=0.244  Sum_probs=65.0

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEE-EECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSK-VLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~-~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      ++.+.++.+.||+..++|||+ ..|++||++|++++.+.   ++  .+ .+++||++++|+|..|.+.|.+++++.++.+
T Consensus        26 ~~~~~~~~~~pg~~~~~H~H~-~~e~~~Vl~G~~~~~i~---~~--~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i   99 (117)
T 2b8m_A           26 HVQINHIVLPRGEQMPKHYSN-SYVHLIIIKGEMTLTLE---DQ--EPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVV   99 (117)
T ss_dssp             SCEEEEEEEETTCBCCCEECS-SCEEEEEEESEEEEEET---TS--CCEEEETTCEEEECTTCEEEEECCSSSEEEEEEE
T ss_pred             ceEEEEEEECCCCcCCCEeCC-CcEEEEEEeCEEEEEEC---CE--EEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEE
Confidence            577888999999999999995 58999999999999873   44  45 8999999999999999999999888888776


Q ss_pred             E
Q 045405          176 F  176 (240)
Q Consensus       176 ~  176 (240)
                      .
T Consensus       100 ~  100 (117)
T 2b8m_A          100 K  100 (117)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=99.26  E-value=5.2e-11  Score=91.88  Aligned_cols=75  Identities=21%  Similarity=0.251  Sum_probs=66.7

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      ..+.+...+++||...++||| +..|++||++|++++.+   +++  .+.+++||++++|+|..|.+.|.+++++.++++
T Consensus        32 ~~~~~~~~~~~pg~~~~~H~H-~~~Ei~~v~~G~~~~~i---~~~--~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i  105 (128)
T 4i4a_A           32 TPFGGAWCIVRPETKSFRHSH-NEYELFIVIQGNAIIRI---NDE--DFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI  105 (128)
T ss_dssp             CSSEEEEEEECTTEECCCBCC-SSEEEEEEEESEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             CCcEEEEEEECCCCccCCEec-CCeEEEEEEeCEEEEEE---CCE--EEEECCCcEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            358889999999999999999 46999999999999987   356  679999999999999999999999898887765


Q ss_pred             E
Q 045405          176 F  176 (240)
Q Consensus       176 ~  176 (240)
                      .
T Consensus       106 ~  106 (128)
T 4i4a_A          106 W  106 (128)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=99.26  E-value=1.8e-11  Score=94.55  Aligned_cols=79  Identities=18%  Similarity=0.181  Sum_probs=66.0

Q ss_pred             ccceEEEEEEEcCCcccC-CccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           95 TQGVALFRIDLDVGGINP-PHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        95 ~~gls~~~v~l~pGg~~~-pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      ..++.+.++.++||+..+ +|||+...+++||++|++++.+   +++  .+.+++||++++|+|..|.+.|.+++++.++
T Consensus        23 ~~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i---~~~--~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~~~   97 (125)
T 3cew_A           23 LTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI---DGE--KIELQAGDWLRIAPDGKRQISAASDSPIGFL   97 (125)
T ss_dssp             CSSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE---TTE--EEEEETTEEEEECTTCCEEEEEBTTBCEEEE
T ss_pred             CCCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence            446788889999999888 8999764445559999999887   355  6799999999999999999999998888888


Q ss_pred             EEEeC
Q 045405          174 PIFNT  178 (240)
Q Consensus       174 ~~~~s  178 (240)
                      ++...
T Consensus        98 ~i~~~  102 (125)
T 3cew_A           98 CIQVK  102 (125)
T ss_dssp             EEEEE
T ss_pred             EEEcC
Confidence            76543

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=99.25  E-value=4.4e-11  Score=93.24  Aligned_cols=77  Identities=19%  Similarity=0.168  Sum_probs=58.9

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEe
Q 045405           98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFN  177 (240)
Q Consensus        98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~  177 (240)
                      +.+.++.++||+..++|+|+...|++||++|++++.+.+  ++  .+.+++||++++|+|..|.+.|.+++ +.++.++.
T Consensus        43 ~~~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~~~--~~--~~~l~~Gd~~~ip~g~~H~~~~~~~~-~~~l~~~~  117 (134)
T 2o8q_A           43 AHVIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEYED--IG--AVMLEAGGSAFQPPGVRHRELRHSDD-LEVLEIVS  117 (134)
T ss_dssp             EEEEEECC-----CCCEEECCSCEEEEEEESEEEEEETT--TE--EEEEETTCEEECCTTCCEEEEEECTT-CEEEEEES
T ss_pred             EEEEEEecCCCCCCCCEECCCCcEEEEEEeCEEEEEECC--cE--EEEecCCCEEEECCCCcEEeEeCCCC-eEEEEEEC
Confidence            456666677899899999987799999999999998732  25  68999999999999999999998774 57776665


Q ss_pred             CC
Q 045405          178 TQ  179 (240)
Q Consensus       178 s~  179 (240)
                      ..
T Consensus       118 p~  119 (134)
T 2o8q_A          118 PA  119 (134)
T ss_dssp             ST
T ss_pred             CC
Confidence            43

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=99.24  E-value=2.2e-11  Score=94.52  Aligned_cols=77  Identities=16%  Similarity=0.223  Sum_probs=68.2

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405           95 TQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus        95 ~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      ..++.+.++.++||+..++|+|+ ..|++||++|++++.+.   ++  .+.+++||++++|+|..|.+.|.+++++.+++
T Consensus        45 ~~~~~~~~~~~~pg~~~~~H~H~-~~e~~~Vl~G~~~~~i~---~~--~~~l~~Gd~i~ip~g~~H~~~~~~~~~~~~l~  118 (126)
T 1vj2_A           45 APNFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGKLTVLKE---QG--EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLC  118 (126)
T ss_dssp             CSSEEEEEEEEEEEEEEEEECCS-SCEEEEEEESEEEEECS---SC--EEEEETTEEEEECTTCCEEEECCSSSCEEEEE
T ss_pred             CCCEEEEEEEECCCCcCCceeCC-CcEEEEEEEeEEEEEEC---CE--EEEECCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            34788999999999999999997 58999999999998863   45  67999999999999999999999999998887


Q ss_pred             EEe
Q 045405          175 IFN  177 (240)
Q Consensus       175 ~~~  177 (240)
                      ++.
T Consensus       119 v~~  121 (126)
T 1vj2_A          119 LIP  121 (126)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            664

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=99.22  E-value=9.1e-11  Score=88.70  Aligned_cols=72  Identities=15%  Similarity=0.301  Sum_probs=62.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ++.+.++.++||+..++|+|+ ..|++||++|++++.+   +++  ...+++||++++|+|..|.+.|.+  ++.++.++
T Consensus        39 ~~~~~~~~~~~g~~~~~H~H~-~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~~~v~  110 (115)
T 1yhf_A           39 DLGITVFSLDKGQEIGRHSSP-GDAMVTILSGLAEITI---DQE--TYRVAEGQTIVMPAGIPHALYAVE--AFQMLLVV  110 (115)
T ss_dssp             TEEEEEEEECTTCEEEEECCS-SEEEEEEEESEEEEEE---TTE--EEEEETTCEEEECTTSCEEEEESS--CEEEEEEE
T ss_pred             ceEEEEEEECCCCccCCEECC-CcEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECC--CceEEEEE
Confidence            678899999999999999997 4899999999999886   355  679999999999999999999987  46666554

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=99.21  E-value=4.3e-11  Score=104.20  Aligned_cols=78  Identities=12%  Similarity=0.105  Sum_probs=66.7

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC-CCEEEE
Q 045405           95 TQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN-EPATFI  173 (240)
Q Consensus        95 ~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~-~~a~~i  173 (240)
                      ...+.+.+++++||+..+.|+|+...|++||++|++++.+.   ++  ++.+++||++++|+|..|++.|.|+ ++++++
T Consensus       176 ~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~---~~--~~~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l  250 (261)
T 1rc6_A          176 GFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLD---NN--WIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYI  250 (261)
T ss_dssp             TCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESS---SC--EEEEETTCEEEECSSEEEEEEEC----CEEEE
T ss_pred             CCceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEEC---CE--EEEeCCCCEEEECCCCcEEeEeCCCCcCEEEE
Confidence            34688999999999999999998779999999999998863   55  6799999999999999999999999 999988


Q ss_pred             EEEe
Q 045405          174 PIFN  177 (240)
Q Consensus       174 ~~~~  177 (240)
                      .+.+
T Consensus       251 ~~~d  254 (261)
T 1rc6_A          251 YSKD  254 (261)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            7654

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.20  E-value=8.5e-11  Score=101.40  Aligned_cols=79  Identities=19%  Similarity=0.225  Sum_probs=68.9

Q ss_pred             ceEEEEEEEcC-CcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           97 GVALFRIDLDV-GGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        97 gls~~~v~l~p-Gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      -+.+..++++| |+..++|||+. .|++||++|++++.+   +++  +..+++||.+++|+|..|.+.|.|+++++++.+
T Consensus       144 ~~~~~~~~~~p~g~~~~~H~H~~-~e~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v  217 (243)
T 3h7j_A          144 WVEIMLAKIPGNGGEMPFHKHRN-EQIGICIGGGYDMTV---EGC--TVEMKFGTAYFCEPREDHGAINRSEKESKSINI  217 (243)
T ss_dssp             TEEEEEEEECTTTEEEEEECCSS-EEEEEECSSCEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             eeEEEEEEECCCCCcCCCEeCCC-cEEEEEEECEEEEEE---CCE--EEEECCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            35677888999 88899999975 899999999999987   355  678999999999999999999999999999998


Q ss_pred             EeCCCC
Q 045405          176 FNTQNP  181 (240)
Q Consensus       176 ~~s~~P  181 (240)
                      +.....
T Consensus       218 ~~p~~~  223 (243)
T 3h7j_A          218 FFPPRY  223 (243)
T ss_dssp             EESCSS
T ss_pred             EcCChh
Confidence            875433

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=99.20  E-value=7.6e-11  Score=96.98  Aligned_cols=75  Identities=21%  Similarity=0.107  Sum_probs=65.2

Q ss_pred             ceEEEEEEEcC-CcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           97 GVALFRIDLDV-GGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        97 gls~~~v~l~p-Gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      -+...+++++| |+...+|.|..+.|++||++|++.+.+.   ++  .+.|++||.+++|+|..|.+.|.++++++++.+
T Consensus        87 ~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~---g~--~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll~V  161 (166)
T 2vpv_A           87 YFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVC---KN--KFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFV  161 (166)
T ss_dssp             SCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEET---TE--EEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             cceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEEC---CE--EEEEcCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            36778899999 7777776666789999999999999983   55  679999999999999999999999999988865


Q ss_pred             E
Q 045405          176 F  176 (240)
Q Consensus       176 ~  176 (240)
                      .
T Consensus       162 q  162 (166)
T 2vpv_A          162 Q  162 (166)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=99.19  E-value=9.3e-11  Score=97.03  Aligned_cols=76  Identities=21%  Similarity=0.149  Sum_probs=64.9

Q ss_pred             ccceEEEEEEEcCCcccC--CccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEE
Q 045405           95 TQGVALFRIDLDVGGINP--PHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATF  172 (240)
Q Consensus        95 ~~gls~~~v~l~pGg~~~--pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~  172 (240)
                      ...+.+.+++++||+..+  +|+|+ ..|++||++|++++.+   +++  .+.|++||++++|++.+|.+.|.+++++ +
T Consensus       101 ~~~~~~~~~~~~pg~~~~~~~H~h~-~~E~~~Vl~G~~~~~~---~~~--~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~  173 (192)
T 1y9q_A          101 DTGLEIFEITLLDHHQQMSSPHALG-VIEYIHVLEGIMKVFF---DEQ--WHELQQGEHIRFFSDQPHGYAAVTEKAV-F  173 (192)
T ss_dssp             TTTEEEEEEEECTTCEEEECCCSTT-CEEEEEEEESCEEEEE---TTE--EEEECTTCEEEEECSSSEEEEESSSCEE-E
T ss_pred             CCcEEEEEEEECCCCCccCCCCCCC-CEEEEEEEEeEEEEEE---CCE--EEEeCCCCEEEEcCCCCeEeECCCCCcE-E
Confidence            446889999999999765  67774 4899999999999887   355  6799999999999999999999999988 7


Q ss_pred             EEEEe
Q 045405          173 IPIFN  177 (240)
Q Consensus       173 i~~~~  177 (240)
                      +.++.
T Consensus       174 l~v~~  178 (192)
T 1y9q_A          174 QNIVA  178 (192)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76654

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=99.15  E-value=2e-10  Score=85.70  Aligned_cols=76  Identities=16%  Similarity=0.125  Sum_probs=62.8

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeE-EEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEA-GIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei-~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      .++.+.++.+.||...++|+|+...|+ +||++|++++.+.+  ++  ...+++||++++|+|..|.+.|.++  +.++.
T Consensus        31 ~~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~--~~--~~~l~~Gd~~~ip~~~~H~~~~~~~--~~~l~  104 (110)
T 2q30_A           31 ENFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG--DA--VIPAPRGAVLVAPISTPHGVRAVTD--MKVLV  104 (110)
T ss_dssp             SSCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG--GC--EEEECTTEEEEEETTSCEEEEESSS--EEEEE
T ss_pred             CCEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC--CE--EEEECCCCEEEeCCCCcEEEEEcCC--cEEEE
Confidence            367889999999999999999755688 89999999987631  34  6799999999999999999999765  45555


Q ss_pred             EEe
Q 045405          175 IFN  177 (240)
Q Consensus       175 ~~~  177 (240)
                      ++.
T Consensus       105 ~~~  107 (110)
T 2q30_A          105 TIA  107 (110)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            554

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=99.14  E-value=5.3e-10  Score=98.10  Aligned_cols=76  Identities=14%  Similarity=0.244  Sum_probs=67.4

Q ss_pred             cceEEEEEEEcCCcccCC-ccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC-CCEEEE
Q 045405           96 QGVALFRIDLDVGGINPP-HTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN-EPATFI  173 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~-~~a~~i  173 (240)
                      ..+.+.+++++||+..+. |+|+ ..|++||++|++++.+   +++  ++.|++||++++|++.+|++.|.|+ ++++++
T Consensus       180 ~~~~~~~~~l~pg~~~~~~H~H~-~~E~~yVl~G~~~~~i---~~~--~~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~l  253 (274)
T 1sef_A          180 FDMNMHILSFEPGASHAYIETHV-QEHGAYLISGQGMYNL---DNE--WYPVEKGDYIFMSAYVPQAAYAVGREEPLMYV  253 (274)
T ss_dssp             CSEEEEEEEECTTCBCSSCBCCS-CCEEEEEEECEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEEECSSSCEEEE
T ss_pred             CCEEEEEEEECCCCccCcceecc-CeEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEeCCCCCCEEEE
Confidence            368899999999999888 9996 5899999999999987   355  6899999999999999999999998 888888


Q ss_pred             EEEe
Q 045405          174 PIFN  177 (240)
Q Consensus       174 ~~~~  177 (240)
                      ...+
T Consensus       254 ~~~~  257 (274)
T 1sef_A          254 YSKD  257 (274)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            7643

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.13  E-value=3.6e-10  Score=100.68  Aligned_cols=77  Identities=17%  Similarity=0.163  Sum_probs=68.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      .+++.++.+.||+..++|||++..|++||++|++++.+   +++  ...|++||++++|+|..|.+.|.++ +++++.++
T Consensus        45 ~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~---~~~--~~~l~~Gd~~~~p~~~~H~~~n~~~-~~~~~~~~  118 (337)
T 1y3t_A           45 LFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL---DGE--RYLLISGDYANIPAGTPHSYRMQSH-RTRLVSYT  118 (337)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECST-TEEEEEEE
T ss_pred             eEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE---CCE--EEEECCCCEEEECCCCcEEEEECCC-CeEEEEEE
Confidence            68899999999999999999868999999999999986   355  6799999999999999999999987 68888777


Q ss_pred             eCC
Q 045405          177 NTQ  179 (240)
Q Consensus       177 ~s~  179 (240)
                      +..
T Consensus       119 ~p~  121 (337)
T 1y3t_A          119 MKG  121 (337)
T ss_dssp             ETT
T ss_pred             CCC
Confidence            644

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=99.12  E-value=5.1e-10  Score=84.78  Aligned_cols=72  Identities=13%  Similarity=0.183  Sum_probs=60.4

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ++.+..+.++||...++|+|+. .|++||++|++.+.+   +++  .+.|++||++++|+|..|.+.|.  +++.++.+.
T Consensus        37 ~~~~~~~~~~~g~~~~~H~h~~-~e~~~vl~G~~~~~i---~~~--~~~l~~Gd~i~i~~~~~H~~~~~--~~~~~~~i~  108 (114)
T 2ozj_A           37 RVQISLFSFADGESVSEEEYFG-DTLYLILQGEAVITF---DDQ--KIDLVPEDVLMVPAHKIHAIAGK--GRFKMLQIT  108 (114)
T ss_dssp             SEEEEEEEEETTSSCCCBCCSS-CEEEEEEEEEEEEEE---TTE--EEEECTTCEEEECTTCCBEEEEE--EEEEEEEEE
T ss_pred             CceEEEEEECCCCccccEECCC-CeEEEEEeCEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEeC--CCcEEEEEE
Confidence            3567778889999999999974 899999999999887   355  67999999999999999999996  356665543

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.11  E-value=4.6e-10  Score=102.35  Aligned_cols=91  Identities=11%  Similarity=0.040  Sum_probs=74.9

Q ss_pred             cCCceEEEeccc-CCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeC
Q 045405           77 VFKRAVTFGDVF-GFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIP  155 (240)
Q Consensus        77 ~~G~~v~~~~~~-~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P  155 (240)
                      ..|+.+..++.. ..+.+.+  +++....|+||+..++|+|+.+ |++||++|++++.+   +++  +..+++||++++|
T Consensus       248 ~~G~~~~~~np~t~~~~~~t--i~~~~~~l~pG~~~~~H~h~~~-ev~~v~~G~g~~~v---~~~--~~~~~~GD~~~vP  319 (354)
T 2d40_A          248 WDGYKMRYVNPVTGGYPMPS--MGAFLQLLPKGFASRVARTTDS-TIYHVVEGSGQVII---GNE--TFSFSAKDIFVVP  319 (354)
T ss_dssp             TTBEEEEECCTTTSSCSSSS--CEEEEEEECTTCBCCCBEESSC-EEEEEEEEEEEEEE---TTE--EEEEETTCEEEEC
T ss_pred             CCCeEEEEeCCCcCCCCCCc--ceeEEEEECCCCCCCceecCCc-EEEEEEeCeEEEEE---CCE--EEEEcCCCEEEEC
Confidence            356678888744 5667775  5666779999999999999875 99999999999998   355  6899999999999


Q ss_pred             CCCeEEEEecCCCCEEEEEEEe
Q 045405          156 RALVHFQLNVGNEPATFIPIFN  177 (240)
Q Consensus       156 ~G~~H~~~N~G~~~a~~i~~~~  177 (240)
                      ++..|...|.  +++.++++.+
T Consensus       320 ~~~~H~~~n~--e~~~l~~~~d  339 (354)
T 2d40_A          320 TWHGVSFQTT--QDSVLFSFSD  339 (354)
T ss_dssp             TTCCEEEEEE--EEEEEEEEES
T ss_pred             CCCeEEEEeC--CCEEEEEEcC
Confidence            9999999994  6677777643

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.08  E-value=4e-10  Score=102.74  Aligned_cols=76  Identities=18%  Similarity=0.250  Sum_probs=67.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      .+.+....++||+..++|+|+ ..|++||++|+++++.+  +++  ...+++||++++|+|..|...|.|+++++++.+.
T Consensus        99 ~l~~~~~~l~PG~~~~~H~H~-~~e~~yVl~G~g~~t~v--~g~--~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~  173 (354)
T 2d40_A           99 TLYAGLQLIMPGEVAPSHRHN-QSALRFIVEGKGAFTAV--DGE--RTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGL  173 (354)
T ss_dssp             SCEEEEEEECTTCEEEEEEES-SCEEEEEEECSSCEEEE--TTE--EEECCTTCEEEECTTSCEEEECCSSSCEEEEEEE
T ss_pred             cEEEEEEEECCCCCcCCeecC-cceEEEEEEEEEEEEEE--CCE--EEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEE
Confidence            678999999999999999996 57999999999988544  355  6799999999999999999999999999998876


Q ss_pred             e
Q 045405          177 N  177 (240)
Q Consensus       177 ~  177 (240)
                      +
T Consensus       174 d  174 (354)
T 2d40_A          174 D  174 (354)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=99.07  E-value=1.4e-09  Score=81.22  Aligned_cols=79  Identities=13%  Similarity=0.198  Sum_probs=66.9

Q ss_pred             EEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeC-CCCCceecc---chhhcCCCCCCHHHHHhhcCCCHHHHHHH
Q 045405          141 FFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNT-QNPGVSDSI---GTLFDTTPPVPNEVLTKSFRVGDDVINTI  216 (240)
Q Consensus       141 ~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s-~~Pg~~~~~---~~lf~s~~~~p~~vla~af~v~~~~v~~l  216 (240)
                      .+..+|++||+++||+|.+-...+..  .+.++++-++ +++....++   .++++   ++|.++++.+|+++.+++++|
T Consensus         5 ~~~~~l~~G~v~vVPq~~~v~~~A~~--~le~v~F~tna~~~~~~~LAG~~~Svl~---~l~~evla~aF~~s~ee~~~l   79 (93)
T 1dgw_Y            5 RYAATLSEGDIIVIPSSFPVALKAAS--DLNMVGIGVNAENNERNFLAGHKENVIR---QIPRQVSDLTFPGSGEEVEEL   79 (93)
T ss_dssp             EEEEEECTTCEEEECTTCCEEEEESS--SEEEEEEEESCTTCCEEESSSSTTBSTT---TSCHHHHHHHSSSCTHHHHHH
T ss_pred             hhhceecCCcEEEECCCCceeEEecC--CeEEEEEEecCCCCeeeeccCCcccHHH---hCCHHHHHHHcCCCHHHHHHH
Confidence            45789999999999999999999864  4999988544 488777775   58999   799999999999999999999


Q ss_pred             HhhcCCCc
Q 045405          217 RAARAQSS  224 (240)
Q Consensus       217 ~~~~~~~~  224 (240)
                      +..+....
T Consensus        80 ~~~q~e~~   87 (93)
T 1dgw_Y           80 LENQKESY   87 (93)
T ss_dssp             TTSCCCCS
T ss_pred             HhcCCCce
Confidence            98875443

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=99.06  E-value=7.8e-10  Score=100.57  Aligned_cols=80  Identities=18%  Similarity=0.162  Sum_probs=64.3

Q ss_pred             ceEEEEEEEcCCcc-cC--CccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           97 GVALFRIDLDVGGI-NP--PHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        97 gls~~~v~l~pGg~-~~--pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      .+.+. ..+.|++. .+  +|||++..|++||++|++++.+.+.+|+...+.|++||++++|+|.+|.+.|.++++ +++
T Consensus        47 ~~~~~-~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~l  124 (350)
T 1juh_A           47 AFTLM-GTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDT-EMT  124 (350)
T ss_dssp             SCEEE-EEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTE-EEE
T ss_pred             cEEEE-EEEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCC-EEE
Confidence            46666 45556554 55  899987899999999999999876445334789999999999999999999998775 777


Q ss_pred             EEEeC
Q 045405          174 PIFNT  178 (240)
Q Consensus       174 ~~~~s  178 (240)
                      .++..
T Consensus       125 ~v~~p  129 (350)
T 1juh_A          125 GVIVP  129 (350)
T ss_dssp             EEEES
T ss_pred             EEEcC
Confidence            76654

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.05  E-value=2.1e-09  Score=95.66  Aligned_cols=74  Identities=16%  Similarity=0.145  Sum_probs=62.5

Q ss_pred             EEEEEEcC-CcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeC
Q 045405          100 LFRIDLDV-GGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNT  178 (240)
Q Consensus       100 ~~~v~l~p-Gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s  178 (240)
                      ...+.+.| |...++|||+...|++||++|++++.+   +++  ++.+++||++++|++..|++.|.++ ++.++.+++.
T Consensus       219 ~~~~~~~p~g~~~~~h~H~~~~e~~~vl~G~~~~~i---~~~--~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~  292 (337)
T 1y3t_A          219 IVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT---DGQ--EIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVP  292 (337)
T ss_dssp             EEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEES
T ss_pred             EEEEEEcCCCCCCCCcCCCCCcEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcC
Confidence            44556666 567889999867999999999999987   355  6899999999999999999999998 8988888754


Q ss_pred             C
Q 045405          179 Q  179 (240)
Q Consensus       179 ~  179 (240)
                      .
T Consensus       293 ~  293 (337)
T 1y3t_A          293 G  293 (337)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=99.05  E-value=8.1e-10  Score=85.68  Aligned_cols=73  Identities=14%  Similarity=0.069  Sum_probs=61.1

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      .+++..++++||+..  |||...+|++||++|++++.+   +|+  ...|++||++++|+|..|.+.|.+ ++++++.+.
T Consensus        39 ~~~~~~~~~~pG~~~--~~H~~~~E~~~Vl~G~~~~~~---~g~--~~~l~~GD~v~ip~g~~H~~~~~~-~~~~~l~v~  110 (119)
T 3lwc_A           39 PITIGYGRYAPGQSL--TETMAVDDVMIVLEGRLSVST---DGE--TVTAGPGEIVYMPKGETVTIRSHE-EGALTAYVT  110 (119)
T ss_dssp             CCEEEEEEECTTCEE--EEECSSEEEEEEEEEEEEEEE---TTE--EEEECTTCEEEECTTCEEEEEEEE-EEEEEEEEE
T ss_pred             CEEEEEEEECCCCCc--CccCCCCEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCEEEEEcCC-CCeEEEEEE
Confidence            588899999999865  455567999999999999987   366  679999999999999999998875 567776655


Q ss_pred             e
Q 045405          177 N  177 (240)
Q Consensus       177 ~  177 (240)
                      .
T Consensus       111 ~  111 (119)
T 3lwc_A          111 Y  111 (119)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=99.05  E-value=2.4e-09  Score=92.65  Aligned_cols=77  Identities=12%  Similarity=0.140  Sum_probs=67.4

Q ss_pred             ccceEEEEEEEcCCcccCC-ccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           95 TQGVALFRIDLDVGGINPP-HTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        95 ~~gls~~~v~l~pGg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      ...+.+.+++++||+..+. |.| ...|.+||++|++.+.+   +++  ++.|++||+++++.+..|+++|.|+++++++
T Consensus       162 ~~~~~~~~~tl~PG~~~~~~~~h-~~ee~~~vLeG~~~~~~---~~~--~~~l~~GD~~~~~~~~pH~~~n~g~~~~~yl  235 (246)
T 1sfn_A          162 AFDFMVSTMSFAPGASLPYAEVH-YMEHGLLMLEGEGLYKL---EEN--YYPVTAGDIIWMGAHCPQWYGALGRNWSKYL  235 (246)
T ss_dssp             TCSEEEEEEEECTTCBCSSCBCC-SSCEEEEEEECEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEEESSSCEEEE
T ss_pred             CCCeEEEEEEECCCCccCcccCC-CceEEEEEEECEEEEEE---CCE--EEEcCCCCEEEECCCCCEEEEcCCCCCEEEE
Confidence            4578999999999999886 556 56899999999999887   466  6799999999999999999999999999888


Q ss_pred             EEEe
Q 045405          174 PIFN  177 (240)
Q Consensus       174 ~~~~  177 (240)
                      .+-+
T Consensus       236 ~~kd  239 (246)
T 1sfn_A          236 LYKD  239 (246)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7654

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=99.03  E-value=5.9e-10  Score=83.56  Aligned_cols=68  Identities=16%  Similarity=0.260  Sum_probs=53.0

Q ss_pred             EEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405          100 LFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus       100 ~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      ..++.+.||. .++|+|+...|++||++|++++.+.+  ++  .+.+++||++++|+|..|.+.|.  +++.++.
T Consensus        30 ~~~~~~~~g~-~~~H~H~~~~E~~~Vl~G~~~~~~~~--~~--~~~l~~Gd~~~ip~~~~H~~~~~--~~~~~l~   97 (107)
T 2i45_A           30 QFHLVKLLGD-YGWHTHGYSDKVLFAVEGDMAVDFAD--GG--SMTIREGEMAVVPKSVSHRPRSE--NGCSLVL   97 (107)
T ss_dssp             EEEEEEEEEE-CCCBCC--CCEEEEESSSCEEEEETT--SC--EEEECTTEEEEECTTCCEEEEEE--EEEEEEE
T ss_pred             EEEEEECCCC-CcceeCCCCCEEEEEEeCEEEEEECC--Cc--EEEECCCCEEEECCCCcEeeEeC--CCeEEEE
Confidence            4456677887 46999987699999999999998732  15  67999999999999999999995  3455553

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=99.02  E-value=9.8e-10  Score=95.58  Aligned_cols=77  Identities=13%  Similarity=0.076  Sum_probs=66.7

Q ss_pred             cceEEEEEEEcCCcccCCccC-CCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTH-PRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~H-p~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      ..+.+.+++++||+....|.| +...|++||++|++++.+   +++  ++.|++||.+++|++..|.+.|.|+++++++.
T Consensus        57 ~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~---~~~--~~~L~~Gd~~~~~~~~~H~~~N~~~~~~~~l~  131 (261)
T 1rc6_A           57 ASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA---EGK--TFALSEGGYLYCPPGSLMTFVNAQAEDSQIFL  131 (261)
T ss_dssp             CSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEECTTCCCEEEECSSSCEEEEE
T ss_pred             CcEEEEEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEeCCCCCEEEEE
Confidence            357889999999998766554 566899999999999987   356  68999999999999999999999999999988


Q ss_pred             EEe
Q 045405          175 IFN  177 (240)
Q Consensus       175 ~~~  177 (240)
                      +..
T Consensus       132 v~~  134 (261)
T 1rc6_A          132 YKR  134 (261)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            774

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.02  E-value=1.1e-09  Score=94.49  Aligned_cols=74  Identities=16%  Similarity=0.209  Sum_probs=64.7

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEE-eCCCCeEEEEecCCCCEEEEEEE
Q 045405           98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFL-IPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v-~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ..+.+..++||...++|||+ ..|++||++|++++.+   +++  ...+++||.++ +|+|..|.+.|.++++++++.+.
T Consensus        34 ~~~~~~~~~pg~~~~~H~H~-~~e~~~Vl~G~~~~~~---~~~--~~~l~~Gd~i~~ip~~~~H~~~n~~~~~~~~l~i~  107 (243)
T 3h7j_A           34 TEVLMSYVPPHTNVEPHQHK-EVQIGMVVSGELMMTV---GDV--TRKMTALESAYIAPPHVPHGARNDTDQEVIAIDIK  107 (243)
T ss_dssp             EEEEEEEECTTEEEEEECCS-SEEEEEEEESEEEEEE---TTE--EEEEETTTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             CEEEEEEECCCCccCCEECC-CcEEEEEEEeEEEEEE---CCE--EEEECCCCEEEEcCCCCcEeeEeCCCCcEEEEEEe
Confidence            35667789999999999997 5999999999999987   355  67999999985 99999999999999999988765


Q ss_pred             e
Q 045405          177 N  177 (240)
Q Consensus       177 ~  177 (240)
                      .
T Consensus       108 r  108 (243)
T 3h7j_A          108 R  108 (243)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=99.01  E-value=4e-09  Score=85.89  Aligned_cols=97  Identities=20%  Similarity=0.090  Sum_probs=69.7

Q ss_pred             ecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEee--CEEEEEEEccCCeEEEE
Q 045405           67 DFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTR--GTVLVGLVTTNNTFFSK  144 (240)
Q Consensus        67 ~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~--G~~~v~~v~~~g~~~~~  144 (240)
                      .+..-+....+.|...+.....     ....+++.++.+.  +..++|||+...|++||++  |++++.+   +|+  .+
T Consensus        21 ~~~ei~~~~~~~G~srR~l~~~-----~~fp~sv~~v~~g--~~~~~H~H~~~~E~~yVLe~~G~g~v~i---dge--~~   88 (157)
T 4h7l_A           21 SLSEIEAVACPCGWAQRAFGHD-----AGTSVSVHYTQIT--KAARTHYHREHQEIYVVLDHAAHATIEL---NGQ--SY   88 (157)
T ss_dssp             ETTTSCCEEETTEEEEEESCGG-----GCCSCEEEEEEEC--SCCCCBBCSSCEEEEEEEEECTTCEEEE---TTE--EE
T ss_pred             EhhhCCCccCCCCeeeEEeEcC-----CCCcEEEEEEeCC--CCccceECCCCcEEEEEEecCcEEEEEE---CCE--EE
Confidence            5555554445555554433221     1223455655554  4568999988889999999  9999987   366  67


Q ss_pred             EECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCC
Q 045405          145 VLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQ  179 (240)
Q Consensus       145 ~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~  179 (240)
                      .+++||++++|+|..|++.+    ++++++++...
T Consensus        89 ~l~~GD~v~IPpg~~H~i~g----~l~~L~I~~Pp  119 (157)
T 4h7l_A           89 PLTKLLAISIPPLVRHRIVG----EATIINIVSPP  119 (157)
T ss_dssp             ECCTTEEEEECTTCCEEEES----CEEEEEEEESS
T ss_pred             EeCCCCEEEECCCCeEeeEC----CEEEEEEECCC
Confidence            99999999999999999973    68888887643

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=99.00  E-value=1.1e-09  Score=96.56  Aligned_cols=76  Identities=17%  Similarity=0.215  Sum_probs=66.6

Q ss_pred             cceEEEEEEEcCCccc--CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           96 QGVALFRIDLDVGGIN--PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~--~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      ..+.+.+++++||+..  +.|.|+ ..|++||++|++++.+.   ++  ++.|++||.+++|+|..|.+.|.|+++++++
T Consensus        66 ~~~~~~~~~l~PG~~~~~~~h~H~-~eE~~~Vl~G~l~v~v~---g~--~~~L~~GD~i~ip~~~~H~~~N~g~~~~~~l  139 (278)
T 1sq4_A           66 ETFSQYIVELAPNGGSDKPEQDPN-AEAVLFVVEGELSLTLQ---GQ--VHAMQPGGYAFIPPGADYKVRNTTGQHTRFH  139 (278)
T ss_dssp             CSCEEEEEEEEEEEEESSCCCCTT-EEEEEEEEESCEEEEES---SC--EEEECTTEEEEECTTCCEEEECCSSSCEEEE
T ss_pred             CcEEEEEEEECCCCccCCCCcCCC-ceEEEEEEeCEEEEEEC---CE--EEEECCCCEEEECCCCcEEEEECCCCCEEEE
Confidence            4689999999999876  557785 69999999999999884   45  6799999999999999999999999999988


Q ss_pred             EEEe
Q 045405          174 PIFN  177 (240)
Q Consensus       174 ~~~~  177 (240)
                      .+..
T Consensus       140 ~v~~  143 (278)
T 1sq4_A          140 WIRK  143 (278)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7764

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=98.99  E-value=2.2e-09  Score=81.92  Aligned_cols=76  Identities=20%  Similarity=0.326  Sum_probs=58.3

Q ss_pred             cceEEEEEEEcCCcccCCc--cCCCCCeEEEEeeCEEEEEEEccCCeEEE--EEECCCCEEEeCCCCeEEEEecCCC-CE
Q 045405           96 QGVALFRIDLDVGGINPPH--THPRGTEAGIVTRGTVLVGLVTTNNTFFS--KVLTPGKVFLIPRALVHFQLNVGNE-PA  170 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH--~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~--~~l~~GDv~v~P~G~~H~~~N~G~~-~a  170 (240)
                      .++.+.++. .+|...+++  +|....|++||++|++++.+.   ++  .  ..|++||.+++|+|..|.+.|.+++ ++
T Consensus        29 ~~~~i~~i~-~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~~---~~--~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~  102 (112)
T 2opk_A           29 KGLKIERII-SNGQASPPGFWYDSPQDEWVMVVSGSAGIECE---GD--TAPRVMRPGDWLHVPAHCRHRVAWTDGGEPT  102 (112)
T ss_dssp             TTEEEEEEE-ESSCCCCTTCCBCCSSEEEEEEEESCEEEEET---TC--SSCEEECTTEEEEECTTCCEEEEEECSSSCE
T ss_pred             CCEEEEEEE-eCCccCCCCccccCCccEEEEEEeCeEEEEEC---CE--EEEEEECCCCEEEECCCCcEEEEeCCCCCCE
Confidence            356676664 456555552  343568999999999999884   33  4  7899999999999999999999976 67


Q ss_pred             EEEEEEe
Q 045405          171 TFIPIFN  177 (240)
Q Consensus       171 ~~i~~~~  177 (240)
                      ++++++.
T Consensus       103 ~~l~v~~  109 (112)
T 2opk_A          103 VWLAVHC  109 (112)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7777664

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=98.97  E-value=1.5e-09  Score=85.82  Aligned_cols=71  Identities=15%  Similarity=0.077  Sum_probs=59.5

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      .+++.++.++||   ..|||....|++||++|++++.+   +|+  .+.|++||++++|+|..|.+.|.  ++++++.++
T Consensus        56 ~~~~~~~~~~pG---~~~~h~~~~E~~~VLeG~~~l~~---~g~--~~~l~~GD~i~~p~g~~h~~~~~--~~~~~l~v~  125 (133)
T 2pyt_A           56 SMAAGFMQWDNA---FFPWTLNYDEIDMVLEGELHVRH---EGE--TMIAKAGDVMFIPKGSSIEFGTP--TSVRFLYVA  125 (133)
T ss_dssp             SSEEEEEEEEEE---EEEEECSSEEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCEEEEEEE--EEEEEEEEE
T ss_pred             cEEEEEEEECCC---CccccCCCCEEEEEEECEEEEEE---CCE--EEEECCCcEEEECCCCEEEEEeC--CCEEEEEEE
Confidence            578889999999   45677667999999999999987   366  57999999999999999999884  567777766


Q ss_pred             e
Q 045405          177 N  177 (240)
Q Consensus       177 ~  177 (240)
                      .
T Consensus       126 ~  126 (133)
T 2pyt_A          126 W  126 (133)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.96  E-value=3.7e-09  Score=97.75  Aligned_cols=79  Identities=11%  Similarity=0.067  Sum_probs=69.7

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEe-cCCCCEEEE
Q 045405           95 TQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLN-VGNEPATFI  173 (240)
Q Consensus        95 ~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N-~G~~~a~~i  173 (240)
                      +..+.+....+.||+..++|.|.. .|+.||++|++....+  +|+  ...+++||++++|.|..|...| .|+++++++
T Consensus       120 t~~L~a~~~~l~PG~~~~~HrH~~-~ev~~IleG~G~~t~v--~G~--~~~~~~GD~i~~P~g~~H~~~N~~gde~l~~l  194 (394)
T 3bu7_A          120 CGWLFSGIQTMKAGERAGAHRHAA-SALRFIMEGSGAYTIV--DGH--KVELGANDFVLTPNGTWHEHGILESGTECIWQ  194 (394)
T ss_dssp             BTTBEEEEEEECTTCBCCCEEESS-CEEEEEEECSCEEEEE--TTE--EEEECTTCEEEECTTCCEEEEECTTCCCEEEE
T ss_pred             CCeeEEEEEEECCCCCcCCccCCc-ceEEEEEEeeEEEEEE--CCE--EEEEcCCCEEEECcCCCEEEEcCCCCCCEEEE
Confidence            346889999999999999999965 6999999999976454  466  6799999999999999999999 999999999


Q ss_pred             EEEeC
Q 045405          174 PIFNT  178 (240)
Q Consensus       174 ~~~~s  178 (240)
                      ++++.
T Consensus       195 ~v~d~  199 (394)
T 3bu7_A          195 DGLDI  199 (394)
T ss_dssp             EEECH
T ss_pred             Ecccc
Confidence            87753

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=98.96  E-value=1.8e-09  Score=79.40  Aligned_cols=53  Identities=25%  Similarity=0.392  Sum_probs=46.5

Q ss_pred             cccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecC
Q 045405          109 GINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVG  166 (240)
Q Consensus       109 g~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G  166 (240)
                      +..++|+|+...|++||++|++++.+.   ++  ...+++||++++|+|..|...|.+
T Consensus        40 ~~~~~H~H~~~~e~~~v~~G~~~~~~~---~~--~~~l~~Gd~~~ip~~~~H~~~~~~   92 (102)
T 3d82_A           40 GEFVWHEHADTDEVFIVMEGTLQIAFR---DQ--NITLQAGEMYVIPKGVEHKPMAKE   92 (102)
T ss_dssp             EECCCBCCTTCCEEEEEEESEEEEECS---SC--EEEEETTEEEEECTTCCBEEEEEE
T ss_pred             CCCCceeCCCCcEEEEEEeCEEEEEEC---CE--EEEEcCCCEEEECCCCeEeeEcCC
Confidence            458899998769999999999998863   44  678999999999999999999974

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.95  E-value=1.1e-08  Score=94.53  Aligned_cols=93  Identities=12%  Similarity=0.023  Sum_probs=74.3

Q ss_pred             CCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCC
Q 045405           78 FKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRA  157 (240)
Q Consensus        78 ~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G  157 (240)
                      .|..+..++..+- +-....+.+....++||+..++|.|.. .|++||++|++++.+   +|+  ...+++||++++|+|
T Consensus       275 ~~~~l~l~nP~~g-~~~~~tl~~~~~~l~PG~~~~~HrH~~-~~v~~VleG~G~~~V---~ge--~~~~~~GD~~~iP~g  347 (394)
T 3bu7_A          275 DGLILRYTNPQTG-GHPMLTMGASMQMLRPGEHTKAHRHTG-NVIYNVAKGQGYSIV---GGK--RFDWSEHDIFCVPAW  347 (394)
T ss_dssp             TBEEEEECCTTTS-SCSSSSCEEEEEEECTTCBCCCEEESS-CEEEEEEECCEEEEE---TTE--EEEECTTCEEEECTT
T ss_pred             CceEEEEeCCCCC-CCCCCeeeEEEEEECCCCcCCCcccCC-cEEEEEEeCeEEEEE---CCE--EEEEeCCCEEEECCC
Confidence            4455555554432 212335788999999999999999974 799999999998776   466  689999999999999


Q ss_pred             CeEEEEecC-CCCEEEEEEEe
Q 045405          158 LVHFQLNVG-NEPATFIPIFN  177 (240)
Q Consensus       158 ~~H~~~N~G-~~~a~~i~~~~  177 (240)
                      ..|...|.| ++++.++++.+
T Consensus       348 ~~H~~~N~g~~e~~~ll~i~D  368 (394)
T 3bu7_A          348 TWHEHCNTQERDDACLFSFND  368 (394)
T ss_dssp             CCEEEEECCSSCCEEEEEEES
T ss_pred             CeEEeEeCCCCCCeEEEEeeC
Confidence            999999998 78988887653

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.95  E-value=2.7e-09  Score=91.15  Aligned_cols=73  Identities=16%  Similarity=0.220  Sum_probs=62.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      .+++.++.++||+..++|+|+ ..|++||++|++++.+   +++  ++.+++||.+++|+|..|++.|. .+++.++.++
T Consensus       152 ~~~~~~~~~~~G~~~~~H~H~-~~e~~~Vl~G~~~~~i---~g~--~~~l~~Gd~i~ip~~~~H~~~~~-~~~~~~ll~~  224 (227)
T 3rns_A          152 NLVMTIMSFWKGESLDPHKAP-GDALVTVLDGEGKYYV---DGK--PFIVKKGESAVLPANIPHAVEAE-TENFKMLLIL  224 (227)
T ss_dssp             TEEEEEEEECTTCEEEEECCS-SEEEEEEEEEEEEEEE---TTE--EEEEETTEEEEECTTSCEEEECC-SSCEEEEEEE
T ss_pred             CeEEEEEEECCCCccCCEECC-CcEEEEEEeEEEEEEE---CCE--EEEECCCCEEEECCCCcEEEEeC-CCCEEEEEEE
Confidence            578899999999999999997 4899999999999987   355  68999999999999999999993 4566665543

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.95  E-value=2.3e-09  Score=98.30  Aligned_cols=78  Identities=19%  Similarity=0.236  Sum_probs=68.8

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      -.+.+....+.||+..++|.|. ..|+.||++|++....+  +|+  ...+++||++++|.|..|...|.|+++++++.+
T Consensus       101 ~~L~a~~~~l~PG~~~~~HrH~-~~ev~~VleG~G~~~~v--dG~--~~~~~~GD~v~iP~g~~H~~~N~gde~l~~l~v  175 (368)
T 3nw4_A          101 PTMWAAIQYLGPRETAPEHRHS-QNAFRFVVEGEGVWTVV--NGD--PVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDG  175 (368)
T ss_dssp             SSCEEEEEEECTTCEEEEEEES-SCEEEECSSCEEEEEEE--TTE--EEEEETTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             CceEEEEEEECCCCccCceecc-cceEEEEEecceEEEEE--CCE--EEEEeCCCEEEECCCCcEEeEeCCCCCeEEEEe
Confidence            4688999999999999999996 47999999999953344  466  679999999999999999999999999999988


Q ss_pred             EeC
Q 045405          176 FNT  178 (240)
Q Consensus       176 ~~s  178 (240)
                      ++.
T Consensus       176 ~D~  178 (368)
T 3nw4_A          176 LDI  178 (368)
T ss_dssp             ECH
T ss_pred             cch
Confidence            864

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.94  E-value=1.3e-08  Score=89.56  Aligned_cols=76  Identities=11%  Similarity=0.192  Sum_probs=66.9

Q ss_pred             ccceEEEEEEEcCCcccCC-ccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           95 TQGVALFRIDLDVGGINPP-HTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        95 ~~gls~~~v~l~pGg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      ...+.+.+++++||+..+. |.|. .+|.+||++|++.+.+   +++  ++.+++||+++++++..|+++|.|++++++|
T Consensus       183 ~~d~~~~~~t~~PG~~~p~~e~H~-~eh~~~vL~G~g~y~l---~~~--~~~V~~GD~i~~~~~~~h~~~n~G~e~~~yl  256 (266)
T 4e2q_A          183 AYDFNIHTMDFQPGEFLNVKEVHY-NQHGLLLLEGQGIYRL---GDN--WYPVQAGDVIWMAPFVPQWYAALGKTRSRYL  256 (266)
T ss_dssp             TCSEEEEEEEECTTCBCSSCCCCS-CCEEEEEEECEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEEESSSCEEEE
T ss_pred             ccceEEEEEEECCCcCcCCceEcc-cceEEEEEeceEEEEE---CCE--EEEecCCCEEEECCCCcEEEEeCCCCCEEEE
Confidence            4468899999999999986 7785 5899999999999887   355  7899999999999999999999999999987


Q ss_pred             EEE
Q 045405          174 PIF  176 (240)
Q Consensus       174 ~~~  176 (240)
                      ..-
T Consensus       257 ~yk  259 (266)
T 4e2q_A          257 LYK  259 (266)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            543

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.94  E-value=4.6e-09  Score=92.61  Aligned_cols=82  Identities=13%  Similarity=0.133  Sum_probs=70.4

Q ss_pred             CCCCccceEEEEEEEcCCcccCC-ccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCC
Q 045405           91 PAVNTQGVALFRIDLDVGGINPP-HTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEP  169 (240)
Q Consensus        91 P~l~~~gls~~~v~l~pGg~~~p-H~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~  169 (240)
                      |.-....+.+.+++++||+..+. |.| ..+|.+||++|++.+.+   +|+  ++.|++||+++++.+..|+++|.|+++
T Consensus       184 p~~~~~~~~~~~~~l~pG~~i~~~~~h-~~e~~~~il~G~~~~~~---~~~--~~~v~~GD~~~~~~~~~h~~~n~g~~~  257 (278)
T 1sq4_A          184 MSDMRHDMHVNIVNFEPGGVIPFAETH-VMEHGLYVLEGKAVYRL---NQD--WVEVEAGDFMWLRAFCPQACYSGGPGR  257 (278)
T ss_dssp             TTCTTCSEEEEEEEECSSSEESCCCCC-SEEEEEEEEECEEEEEE---TTE--EEEEETTCEEEEEESCCEEEECCSSSC
T ss_pred             CCCcCCCeEEEEEEECCCCCcCCCCCC-CccEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCCEEEEcCCCCC
Confidence            43334578999999999999886 556 55899999999999886   466  789999999999999999999999999


Q ss_pred             EEEEEEEeC
Q 045405          170 ATFIPIFNT  178 (240)
Q Consensus       170 a~~i~~~~s  178 (240)
                      ++++.+.+-
T Consensus       258 ~~yl~~~d~  266 (278)
T 1sq4_A          258 FRYLLYKDV  266 (278)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEc
Confidence            999988864

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=98.94  E-value=2e-09  Score=94.34  Aligned_cols=77  Identities=9%  Similarity=0.005  Sum_probs=66.1

Q ss_pred             cceEEEEEEEcCCcccCCcc-CCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHT-HPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~-Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      ..+.+.+++++||+....|. |+...|++||++|++++.+.   ++  ++.|++||.+++|++.+|.+.|.|+++++++.
T Consensus        60 ~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~---~~--~~~L~~GD~~~~~~~~~H~~~N~~~~~~~~l~  134 (274)
T 1sef_A           60 ATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDG---QE--THELEAGGYAYFTPEMKMYLANAQEADTEVFL  134 (274)
T ss_dssp             CSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECS---SC--EEEEETTEEEEECTTSCCEEEESSSSCEEEEE
T ss_pred             CcEEEEEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEEC---CE--EEEECCCCEEEECCCCCEEEEeCCCCCEEEEE
Confidence            35789999999999766554 45668999999999999873   55  67999999999999999999999999999988


Q ss_pred             EEe
Q 045405          175 IFN  177 (240)
Q Consensus       175 ~~~  177 (240)
                      +..
T Consensus       135 v~~  137 (274)
T 1sef_A          135 YKK  137 (274)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            774

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.90  E-value=5.9e-09  Score=88.99  Aligned_cols=73  Identities=11%  Similarity=-0.037  Sum_probs=64.1

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ++.+.++.++||...++|.||. +|++||++|++++.+.   |+  +..+++||++++|+|.+|.+.|.  ++++++.++
T Consensus        36 ~~~~~~~~~~~G~~~~~h~h~~-~~~~~Vl~G~~~~~i~---~~--~~~l~~Gd~~~~p~~~~H~~~a~--~~~~~l~i~  107 (227)
T 3rns_A           36 NSYISLFSLAKDEEITAEAMLG-NRYYYCFNGNGEIFIE---NN--KKTISNGDFLEITANHNYSIEAR--DNLKLIEIG  107 (227)
T ss_dssp             SEEEEEEEECTTCEEEECSCSS-CEEEEEEESEEEEEES---SC--EEEEETTEEEEECSSCCEEEEES--SSEEEEEEE
T ss_pred             CcEEEEEEECCCCccCccccCC-CEEEEEEeCEEEEEEC---CE--EEEECCCCEEEECCCCCEEEEEC--CCcEEEEEE
Confidence            5788999999999999999975 9999999999999984   45  68999999999999999999985  467887765


Q ss_pred             e
Q 045405          177 N  177 (240)
Q Consensus       177 ~  177 (240)
                      .
T Consensus       108 ~  108 (227)
T 3rns_A          108 E  108 (227)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.88  E-value=1.9e-08  Score=84.37  Aligned_cols=84  Identities=12%  Similarity=0.138  Sum_probs=67.0

Q ss_pred             EEEEEEEcCCc----------ccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCC
Q 045405           99 ALFRIDLDVGG----------INPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNE  168 (240)
Q Consensus        99 s~~~v~l~pGg----------~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~  168 (240)
                      +...+.+.|+.          ..++|+|+. .|+.||++|++.+.+.+.+++.+...+++||++++|+|..|+..+..+.
T Consensus        75 ~~D~v~~~p~~~p~~~~k~~~~~~~H~H~~-~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~~~  153 (191)
T 1vr3_A           75 WMDIITICKDTLPNYEEKIKMFFEEHLHLD-EEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKN  153 (191)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHSCEECSS-CEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTC
T ss_pred             ceeEEEECCCcCcchhhhhccCCcceECCc-ceEEEEEeceEEEEECCCCCeEEEEEECCCCEEEECcCCcCCcccCCCC
Confidence            45566677765          248899986 8999999999999998655666667999999999999999999987777


Q ss_pred             CEEEEEEEeCCCCCce
Q 045405          169 PATFIPIFNTQNPGVS  184 (240)
Q Consensus       169 ~a~~i~~~~s~~Pg~~  184 (240)
                      ....+-+|. ..|+..
T Consensus       154 ~~~airlF~-~~~~W~  168 (191)
T 1vr3_A          154 YVKAMRLFV-GEPVWT  168 (191)
T ss_dssp             CEEEEEEES-SSCCCC
T ss_pred             CEEEEEEEC-CCCCcc
Confidence            777777775 345554

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=98.88  E-value=8e-09  Score=88.02  Aligned_cols=77  Identities=22%  Similarity=0.169  Sum_probs=67.0

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405           95 TQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus        95 ~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      ...+.+.++.++||...|.|.|+ .+|+.||++|++++.+.  +++  +..+++||++++|.|..|++. ++++|+..+.
T Consensus       129 s~~l~lG~v~l~PG~~yP~HsHp-~EEiy~VLsG~~e~~v~--~g~--~~~l~pGd~v~ipsgv~Ha~r-t~dePllalw  202 (217)
T 4b29_A          129 TQSLRVTVGYWGPGLDYGWHEHL-PEELYSVVSGRALFHLR--NAP--DLMLEPGQTRFHPANAPHAMT-TLTDPILTLV  202 (217)
T ss_dssp             CSSCEEEEEEECSSCEEEEEECS-SEEEEEEEEECEEEEET--TSC--CEEECTTCEEEECTTCCEEEE-CCSSCEEEEE
T ss_pred             CCeEEEEEEEECCCCcCCCCCCC-CceEEEEEeCCEEEEEC--CCC--EEecCCCCEEEcCCCCceeEE-ECCccEEEEE
Confidence            34689999999999999999997 59999999999999874  244  679999999999999999998 5889998776


Q ss_pred             EEe
Q 045405          175 IFN  177 (240)
Q Consensus       175 ~~~  177 (240)
                      +..
T Consensus       203 vW~  205 (217)
T 4b29_A          203 LWR  205 (217)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            664

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=98.84  E-value=1.1e-08  Score=82.82  Aligned_cols=71  Identities=14%  Similarity=0.089  Sum_probs=57.8

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      .+++..++++ ++-  .|||...+|+.||++|++++.+   +|+  ...+++||+++||+|..|.+.|.  ++++++.+.
T Consensus        65 ~~s~g~~~~e-~~~--~~~~~~~eE~~yVLeG~~~l~i---~g~--~~~l~~GD~i~iP~G~~h~~~n~--~~a~~l~V~  134 (151)
T 4axo_A           65 RLGCGMMEMK-ETT--FDWTLNYDEIDYVIDGTLDIII---DGR--KVSASSGELIFIPKGSKIQFSVP--DYARFIYVT  134 (151)
T ss_dssp             SCEEEEEEEE-EEE--EEEECSSEEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCEEEEEEE--EEEEEEEEE
T ss_pred             cEEEEEEEEc-Ccc--ccEeCCCcEEEEEEEeEEEEEE---CCE--EEEEcCCCEEEECCCCEEEEEeC--CCEEEEEEE
Confidence            4667777776 443  4677778999999999999986   466  68999999999999999999997  578877776


Q ss_pred             e
Q 045405          177 N  177 (240)
Q Consensus       177 ~  177 (240)
                      .
T Consensus       135 ~  135 (151)
T 4axo_A          135 Y  135 (151)
T ss_dssp             E
T ss_pred             C
Confidence            5

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.77  E-value=1.8e-08  Score=88.56  Aligned_cols=75  Identities=17%  Similarity=0.121  Sum_probs=63.8

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      ..+.+.+++++||+..+.|.| ..+|++||++|++++.+.+  |+  ++.|++||.+++|++..|.+.|.  ++++++.+
T Consensus        68 ~~f~~~lv~l~PGg~s~~~~h-~~EEfiyVleG~l~l~l~~--g~--~~~L~~Gds~y~p~~~~H~~~N~--~~Ar~l~V  140 (266)
T 4e2q_A           68 SHFVMYLAKMKEMSSSGLPPQ-DIERLIFVVEGAVTLTNTS--SS--SKKLTVDSYAYLPPNFHHSLDCV--ESATLVVF  140 (266)
T ss_dssp             CSSEEEEEEECSSEECCCCCT-TEEEEEEEEEECEEEEC----CC--CEEECTTEEEEECTTCCCEEEES--SCEEEEEE
T ss_pred             CcEEEEEEEECcCCcCCCCCC-CCeEEEEEEEEEEEEEECC--Cc--EEEEcCCCEEEECCCCCEEEEeC--CCEEEEEE
Confidence            368899999999998888867 5799999999999998741  44  67999999999999999999995  67888876


Q ss_pred             Ee
Q 045405          176 FN  177 (240)
Q Consensus       176 ~~  177 (240)
                      ..
T Consensus       141 ~k  142 (266)
T 4e2q_A          141 ER  142 (266)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=98.71  E-value=6.4e-08  Score=78.82  Aligned_cols=74  Identities=16%  Similarity=0.128  Sum_probs=62.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec--CCCCEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV--GNEPATFIP  174 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~--G~~~a~~i~  174 (240)
                      +..+.+++++||+..++|.|+. .|.+|||+|+...   ++++    .++++||.++.|.|..|...+.  ++++++++.
T Consensus        41 g~~v~lvr~~pG~~~p~H~H~g-~ee~~VL~G~~~~---~e~~----~~~~~Gd~~~~P~g~~H~~~~~~~~~e~~~~~~  112 (159)
T 3ebr_A           41 GETITLLKAPAGMEMPRHHHTG-TVIVYTVQGSWRY---KEHD----WVAHAGSVVYETASTRHTPQSAYAEGPDIITFN  112 (159)
T ss_dssp             TEEEEEEEECSSCBCCCEEESS-CEEEEEEESCEEE---TTSS----CCBCTTCEEEECSSEEECEEESSSSSSCEEEEE
T ss_pred             CeEEEEEEECCCCCcccccCCC-CEEEEEEEeEEEE---eCCC----eEECCCeEEEECCCCcceeEeCCCCCCCEEEEE
Confidence            5678899999999999999986 8999999999874   2333    3789999999999999999998  778888887


Q ss_pred             EEeC
Q 045405          175 IFNT  178 (240)
Q Consensus       175 ~~~s  178 (240)
                      +.+.
T Consensus       113 ~~~G  116 (159)
T 3ebr_A          113 IVAG  116 (159)
T ss_dssp             EEES
T ss_pred             EecC
Confidence            6553

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=98.68  E-value=3.3e-08  Score=74.49  Aligned_cols=62  Identities=15%  Similarity=0.082  Sum_probs=49.8

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCE
Q 045405          102 RIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPA  170 (240)
Q Consensus       102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a  170 (240)
                      ...+.||.. +.| |+ ..|++||++|++++.+.  +++  ...|++||++++|+|..|.+.|.++...
T Consensus        35 ~~~~~pg~~-~~h-H~-~~E~~~Vl~G~~~~~i~--~g~--~~~l~~GD~i~ip~g~~H~~~n~~~~~~   96 (101)
T 1o5u_A           35 IWEKEVSEF-DWY-YD-TNETCYILEGKVEVTTE--DGK--KYVIEKGDLVTFPKGLRCRWKVLEPVRK   96 (101)
T ss_dssp             EEEECSEEE-EEE-CS-SCEEEEEEEEEEEEEET--TCC--EEEEETTCEEEECTTCEEEEEEEEEEEE
T ss_pred             EEEeCCCcc-ccc-CC-ceEEEEEEeCEEEEEEC--CCC--EEEECCCCEEEECCCCcEEEEeCCCeeE
Confidence            567788764 345 64 69999999999999873  145  6799999999999999999999775433

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=98.66  E-value=3.3e-08  Score=77.12  Aligned_cols=67  Identities=13%  Similarity=0.081  Sum_probs=54.8

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCC
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEP  169 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~  169 (240)
                      .+++..+.+.||... .|+|.. .|++||++|++++.+  ++|+  ..+|++||++++|+|..|.+.|.++..
T Consensus        48 ~~~~g~w~~~pG~~~-~~~~~~-~E~~~Vl~G~~~l~~--~~g~--~~~l~~GD~~~ip~g~~h~~~~~~~~r  114 (123)
T 3bcw_A           48 KVESGVWESTSGSFQ-SNTTGY-IEYCHIIEGEARLVD--PDGT--VHAVKAGDAFIMPEGYTGRWEVDRHVK  114 (123)
T ss_dssp             TEEEEEEEEEEEEEE-CCCTTE-EEEEEEEEEEEEEEC--TTCC--EEEEETTCEEEECTTCCCEEEEEEEEE
T ss_pred             CEEEEEEEECCCcee-eEcCCC-cEEEEEEEEEEEEEE--CCCe--EEEECCCCEEEECCCCeEEEEECCcee
Confidence            478888899998754 466642 899999999999886  2455  579999999999999999999986543

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.65  E-value=1.5e-08  Score=84.24  Aligned_cols=70  Identities=21%  Similarity=0.246  Sum_probs=56.1

Q ss_pred             cCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCc
Q 045405          111 NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGV  183 (240)
Q Consensus       111 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~  183 (240)
                      .++|+|+. .|+.||++|++.+.+. .+++.+...+++||++++|+|..|+..+..+.....+-+|... |+.
T Consensus        93 ~~~H~H~~-~Ei~~Vl~G~g~~~i~-~~d~~~~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~~-~~w  162 (179)
T 1zrr_A           93 LNEHTHGE-DEVRFFVEGAGLFCLH-IGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNP-EGW  162 (179)
T ss_dssp             HSCBEESS-CEEEEEEESCCCCCEE-CSSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCG-GGE
T ss_pred             ccceECCh-heEEEEEcceEEEEEE-eCCEEEEEEECCCCEEEECCCCeEeeecCCCceEEEEEeccCC-CCc
Confidence            57899986 8999999999998875 3466566789999999999999999987666566667666533 554

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.62  E-value=8.7e-08  Score=82.74  Aligned_cols=71  Identities=14%  Similarity=0.125  Sum_probs=61.0

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      .+.+.+++++||+....|+   .+|++||++|++++.+.   ++  ++.|++||.+++|++..|.+.|.  +++.++.+.
T Consensus        49 ~~~~~~~~l~Pg~~~~~~~---~ee~~~Vl~G~~~~~~~---~~--~~~l~~Gd~~~~p~~~~H~~~n~--~~~~~l~v~  118 (246)
T 1sfn_A           49 RFVQFTAEMPAGAQATESV---YQRFAFVLSGEVDVAVG---GE--TRTLREYDYVYLPAGEKHMLTAK--TDARVSVFE  118 (246)
T ss_dssp             SSEEEEEEECTTCEEECCS---SEEEEEEEEEEEEEECS---SC--EEEECTTEEEEECTTCCCEEEEE--EEEEEEEEE
T ss_pred             cEEEEEEEECCCCcCCCCc---eeEEEEEEECEEEEEEC---CE--EEEECCCCEEEECCCCCEEEEeC--CCEEEEEEE
Confidence            5788999999999877774   68999999999999873   55  68999999999999999999998  667777665


Q ss_pred             e
Q 045405          177 N  177 (240)
Q Consensus       177 ~  177 (240)
                      .
T Consensus       119 ~  119 (246)
T 1sfn_A          119 K  119 (246)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.55  E-value=3.8e-07  Score=82.75  Aligned_cols=79  Identities=18%  Similarity=0.189  Sum_probs=63.0

Q ss_pred             CCCccceEEEEEEEcC---CcccCCccCCCCCeEEEEeeCEEEEEEEccCC-eEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405           92 AVNTQGVALFRIDLDV---GGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-TFFSKVLTPGKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus        92 ~l~~~gls~~~v~l~p---Gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~~~~~~l~~GDv~v~P~G~~H~~~N~G~  167 (240)
                      ..+...+++.++++.+   |+..+.|.|+. +|++||++|++++.+.   | +  .++|++||++++|+|.+|.+.|.++
T Consensus       243 ~~~~~~f~~~~i~~~~~~~g~~~~~h~~~~-~~~~~vleG~~~i~i~---g~~--~~~l~~Gd~~~iPag~~h~~~~~~~  316 (350)
T 1juh_A          243 QAQDTNYTLSTISMSTTPSTVTVPTWSFPG-ACAFQVQEGRVVVQIG---DYA--ATELGSGDVAFIPGGVEFKYYSEAY  316 (350)
T ss_dssp             HHGGGCEEEEEEEECCCCTTSCCCCBCCSS-CEEEEEEESCEEEEET---TSC--CEEECTTCEEEECTTCCEEEEESSS
T ss_pred             cCceeEEEEEEEeeccccCCCCCCcccCCC-cEEEEEEeeEEEEEEC---CeE--EEEeCCCCEEEECCCCCEEEEecCC
Confidence            3344357888888888   34678888965 9999999999999984   4 4  6799999999999999999999765


Q ss_pred             CCEEEEEEEe
Q 045405          168 EPATFIPIFN  177 (240)
Q Consensus       168 ~~a~~i~~~~  177 (240)
                      . +.++.+.+
T Consensus       317 ~-~~~l~~~~  325 (350)
T 1juh_A          317 F-SKVLFVSS  325 (350)
T ss_dssp             S-EEEEEEEE
T ss_pred             e-EEEEEEec
Confidence            4 66665554

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=98.53  E-value=4.4e-07  Score=75.03  Aligned_cols=78  Identities=23%  Similarity=0.276  Sum_probs=61.3

Q ss_pred             eEEEEEEEcCCcccCCccCCC------CCeEEEEeeCEEEEEEEccCCeE------------------EEEEECCCCEEE
Q 045405           98 VALFRIDLDVGGINPPHTHPR------GTEAGIVTRGTVLVGLVTTNNTF------------------FSKVLTPGKVFL  153 (240)
Q Consensus        98 ls~~~v~l~pGg~~~pH~Hp~------a~Ei~yVl~G~~~v~~v~~~g~~------------------~~~~l~~GDv~v  153 (240)
                      -..-++.+.||+..|.|+|+.      -.|-++|+.|++++.+.+  ++.                  ...+|++||.+.
T Consensus        53 Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~~g--~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvt  130 (175)
T 2y0o_A           53 YCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYVEG--EKTPLPKVLPPQEDREHYTVWHEIELEPGGQYT  130 (175)
T ss_dssp             EEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEESS--SCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEE
T ss_pred             ceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEECC--ccccCcceeccCCceeeecCCcEEEECCCCEEE
Confidence            566789999999999999998      899999999999887732  221                  246999999999


Q ss_pred             eCCCCeEEEEecCCCCEEEEEEEeCC
Q 045405          154 IPRALVHFQLNVGNEPATFIPIFNTQ  179 (240)
Q Consensus       154 ~P~G~~H~~~N~G~~~a~~i~~~~s~  179 (240)
                      +|+|..|++.| |.+.++ +.-+++.
T Consensus       131 Ippg~~H~f~a-geegvl-i~EvSt~  154 (175)
T 2y0o_A          131 IPPNTKHWFQA-GEEGAV-VTEMSST  154 (175)
T ss_dssp             ECTTCCEEEEE-EEEEEE-EEEEEEC
T ss_pred             ECCCCcEEEEe-CCCCEE-EEEEeCC
Confidence            99999999999 434444 4444443

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=98.51  E-value=5.5e-08  Score=77.70  Aligned_cols=76  Identities=14%  Similarity=-0.007  Sum_probs=58.0

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeE-EEEEECCCCEEEeCCCCeEE-EEecCCCCEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTF-FSKVLTPGKVFLIPRALVHF-QLNVGNEPATFIP  174 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~-~~~~l~~GDv~v~P~G~~H~-~~N~G~~~a~~i~  174 (240)
                      |-.+.+++++||+..++|+|+. .|.+|||+|++...    .+.. ....+++||.+++|.|..|. ..+  .+.++++.
T Consensus        43 g~~~~~~~~~pG~~~p~H~H~~-~ee~~VL~G~~~~~----~g~~~~~~~~~~Gd~~~~p~g~~H~p~~~--~e~~~~l~  115 (145)
T 2o1q_A           43 GSWTAIFDCPAGSSFAAHVHVG-PGEYFLTKGKMDVR----GGKAAGGDTAIAPGYGYESANARHDKTEF--PVASEFYM  115 (145)
T ss_dssp             TEEEEEEEECTTEEECCEEESS-CEEEEEEEEEEEET----TCGGGTSEEEESSEEEEECTTCEESCCEE--EEEEEEEE
T ss_pred             ccEEEEEEECCCCCCCccCCCC-CEEEEEEEeEEEEc----CCCEecceEeCCCEEEEECcCCccCCeEC--CCCeEEEE
Confidence            3457789999999999999986 67799999999853    2321 02689999999999999999 443  34466776


Q ss_pred             EEeCC
Q 045405          175 IFNTQ  179 (240)
Q Consensus       175 ~~~s~  179 (240)
                      +++..
T Consensus       116 ~~~gp  120 (145)
T 2o1q_A          116 SFLGP  120 (145)
T ss_dssp             EEESC
T ss_pred             EECCc
Confidence            67644

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=98.51  E-value=1.7e-06  Score=71.15  Aligned_cols=85  Identities=14%  Similarity=0.239  Sum_probs=71.8

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEcc-CCe---EEEEEECCCCEEEeCCCCeEEEEecCCCCEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTT-NNT---FFSKVLTPGKVFLIPRALVHFQLNVGNEPATF  172 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~-~g~---~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~  172 (240)
                      ++++..+...||...++|-|.++..+++|++|+++..+... +++   ..+..+++||++++|++.+|.+.|.++++++-
T Consensus        68 ~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~~~aVS  147 (171)
T 3eqe_A           68 ELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPTSERMVS  147 (171)
T ss_dssp             SCEEEEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCSSSCEEE
T ss_pred             CeEEEEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCCCCCEEE
Confidence            57889999999999999999887889999999999876532 232   13578999999999999999999999999999


Q ss_pred             EEEEeCCCC
Q 045405          173 IPIFNTQNP  181 (240)
Q Consensus       173 i~~~~s~~P  181 (240)
                      |-++..+..
T Consensus       148 lHvY~pp~~  156 (171)
T 3eqe_A          148 LHVYSPPLE  156 (171)
T ss_dssp             EEEEESCCC
T ss_pred             EEEeCCCcc
Confidence            988875543

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=98.48  E-value=2.1e-07  Score=76.30  Aligned_cols=74  Identities=18%  Similarity=0.164  Sum_probs=59.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecC--CCCEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVG--NEPATFIP  174 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G--~~~a~~i~  174 (240)
                      +..+.+++++||+..++|+|+. .|.+|||+|++...   . +.  ...+++||.++.|.|..|...+..  +++++.+.
T Consensus        42 g~~v~lvr~~pG~~~p~H~H~g-~ee~~VL~G~f~~~---~-~~--~~~~~aGd~~~~P~g~~H~~~a~~~~~~gci~l~  114 (165)
T 3cjx_A           42 GLMVMRASFAPGLTLPLHFHTG-TVHMYTISGCWYYT---E-YP--GQKQTAGCYLYEPGGSIHQFNTPRDNEGQTEVIF  114 (165)
T ss_dssp             TEEEEEEEECTTCBCCEEEESS-CEEEEEEESEEEET---T-CT--TSCEETTEEEEECTTCEECEECCTTCSSCEEEEE
T ss_pred             CcEEEEEEECCCCcCCcccCCC-CEEEEEEEEEEEEC---C-Cc--eEEECCCeEEEeCCCCceeeEeCCCCCCCcEEEE
Confidence            5678899999999999999976 89999999998752   2 21  246789999999999999998854  33776666


Q ss_pred             EEe
Q 045405          175 IFN  177 (240)
Q Consensus       175 ~~~  177 (240)
                      +.+
T Consensus       115 v~~  117 (165)
T 3cjx_A          115 MLS  117 (165)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            555

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=98.48  E-value=1.2e-06  Score=71.96  Aligned_cols=60  Identities=20%  Similarity=0.151  Sum_probs=51.1

Q ss_pred             EcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecC
Q 045405          105 LDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVG  166 (240)
Q Consensus       105 l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G  166 (240)
                      -.|++....|.|+ .+|++||++|++++.+.+. |+.....|++||++++|+|+.|.-...+
T Consensus        42 ~Gpn~r~d~H~h~-~dE~FyvlkG~m~i~v~d~-g~~~~v~l~eGE~f~lP~gvpH~P~r~~  101 (174)
T 1yfu_A           42 GGPNHRTDYHDDP-LEEFFYQLRGNAYLNLWVD-GRRERADLKEGDIFLLPPHVRHSPQRPE  101 (174)
T ss_dssp             CSCBCCCCEEECS-SCEEEEEEESCEEEEEEET-TEEEEEEECTTCEEEECTTCCEEEEBCC
T ss_pred             cCCCcCccCcCCC-CceEEEEEeeEEEEEEEcC-CceeeEEECCCCEEEeCCCCCcCccccC
Confidence            4566778899884 6999999999999999874 6555789999999999999999987654

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.43  E-value=2.6e-06  Score=77.94  Aligned_cols=88  Identities=15%  Similarity=0.120  Sum_probs=70.7

Q ss_pred             Cce-EEEeccc-CCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCC
Q 045405           79 KRA-VTFGDVF-GFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPR  156 (240)
Q Consensus        79 G~~-v~~~~~~-~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~  156 (240)
                      |.. +..++.. .-+.+.  -|++....|+||...++|-|. +.++++|++|++++.+   +++  +.+.++||+|++|.
T Consensus       260 g~~~~~y~NP~tg~~~~p--ti~~~~~~L~pG~~t~~hRht-~s~Vy~V~eG~G~~~I---~~~--~~~w~~gD~fvvP~  331 (368)
T 3nw4_A          260 GHAAIRYVNPTTGGDVMP--TLRCEFHRLRAGTETATRNEV-GSTVFQVFEGAGAVVM---NGE--TTKLEKGDMFVVPS  331 (368)
T ss_dssp             TEEEEECBCTTTSSBSSS--SCEEEEEEECTTCBCCCEEES-SCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECT
T ss_pred             ceEEEEEeCCCCCCCcch--hHHhheEEECCCCccCCeecc-ccEEEEEEeCcEEEEE---CCE--EEEecCCCEEEECC
Confidence            665 6666654 233455  467778899999999999996 5799999999999988   355  67899999999999


Q ss_pred             CCeEEEEecCCCCEEEEEEE
Q 045405          157 ALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus       157 G~~H~~~N~G~~~a~~i~~~  176 (240)
                      +..|...|.  +++.++.+-
T Consensus       332 w~~h~~~n~--~~a~Lf~~~  349 (368)
T 3nw4_A          332 WVPWSLQAE--TQFDLFRFS  349 (368)
T ss_dssp             TCCEEEEES--SSEEEEEEE
T ss_pred             CCcEEEEeC--CCEEEEEEe
Confidence            999999996  577776544

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.40  E-value=1.4e-06  Score=78.05  Aligned_cols=77  Identities=21%  Similarity=0.135  Sum_probs=63.3

Q ss_pred             EEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccC-CeEEEEEECC-C---CEEEeCCCCeEEEEecCCCCEEEE
Q 045405           99 ALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN-NTFFSKVLTP-G---KVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        99 s~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~-g~~~~~~l~~-G---Dv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      .....++.||.....|||....|.++|++|++++.+.++. ++  ...++. |   +++++|+|..|.+.|.|+++++++
T Consensus       273 q~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~  350 (369)
T 3st7_A          273 QVSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDE--IIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTI  350 (369)
T ss_dssp             EEEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCCC--CEEEEEETTBCCEEEECTTEEEEEEECSSSCEEEE
T ss_pred             eEEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCCc--EEEEEecCCcceEEEeCCCceEEeEEcCCCcEEEE
Confidence            3456678999999999999999999999999998776543 45  344544 6   999999999999999998999887


Q ss_pred             EEEe
Q 045405          174 PIFN  177 (240)
Q Consensus       174 ~~~~  177 (240)
                      ..-+
T Consensus       351 ~~~~  354 (369)
T 3st7_A          351 MWVN  354 (369)
T ss_dssp             EEES
T ss_pred             EecC
Confidence            6543

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=98.36  E-value=9.6e-07  Score=70.17  Aligned_cols=60  Identities=17%  Similarity=0.291  Sum_probs=49.0

Q ss_pred             CcccCCccCCCCCeEEEEeeCEEEEEEEccC-C--eEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405          108 GGINPPHTHPRGTEAGIVTRGTVLVGLVTTN-N--TFFSKVLTPGKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus       108 Gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~-g--~~~~~~l~~GDv~v~P~G~~H~~~N~G~  167 (240)
                      +++..+|.|++.+|+++|++|++++.+-+.. +  +.....+++|++++||+|+.|......+
T Consensus        39 ~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~~e  101 (140)
T 3d0j_A           39 EGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQKD  101 (140)
T ss_dssp             TTCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEECTT
T ss_pred             ccCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCCCc
Confidence            3567789999999999999999999987421 1  2336799999999999999999887543

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=98.35  E-value=4.8e-06  Score=70.48  Aligned_cols=81  Identities=16%  Similarity=0.138  Sum_probs=68.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEc--cCCeE----EEEEECCCCEEEeCC--CCeEEEEec-CC
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVT--TNNTF----FSKVLTPGKVFLIPR--ALVHFQLNV-GN  167 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~--~~g~~----~~~~l~~GDv~v~P~--G~~H~~~N~-G~  167 (240)
                      .+.+..+...||...++|-|.. ..+++|++|+++..+..  .+|+.    .+.++++||+++++.  |.+|.+.|. ++
T Consensus        78 ~~~v~~l~w~PGq~spiHdH~~-~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N~~~~  156 (208)
T 2gm6_A           78 RFSIVSFVWGPGQRTPIHDHTV-WGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDD  156 (208)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSS-CEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CEEEEEEEeCCCcccCcccCCc-ceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEeccCCCC
Confidence            4788899999999999999986 99999999999887753  22322    157899999999999  999999999 68


Q ss_pred             CCEEEEEEEeC
Q 045405          168 EPATFIPIFNT  178 (240)
Q Consensus       168 ~~a~~i~~~~s  178 (240)
                      ++++.|-++..
T Consensus       157 ~~avsLHvY~~  167 (208)
T 2gm6_A          157 RVSISIHVYGA  167 (208)
T ss_dssp             SCEEEEEEESS
T ss_pred             CcEEEEEEEcC
Confidence            89998887743

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=98.22  E-value=1e-05  Score=63.60  Aligned_cols=58  Identities=19%  Similarity=0.197  Sum_probs=47.7

Q ss_pred             CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC-CCEEEEEE
Q 045405          112 PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN-EPATFIPI  175 (240)
Q Consensus       112 ~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~-~~a~~i~~  175 (240)
                      .||.|+ .-|++||++|++++.+   +++  .+.+++||++++|+|.+|...+.++ ++...+.+
T Consensus        32 ~p~~h~-~~~i~~v~~G~~~~~i---~~~--~~~l~~Gd~~~i~p~~~H~~~~~~~~~~~~~~~i   90 (164)
T 2arc_A           32 RPLGMK-GYILNLTIRGQGVVKN---QGR--EFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWV   90 (164)
T ss_dssp             ETTCCS-SEEEEEEEEECEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECTTSSEEEEEEE
T ss_pred             cccCCC-ceEEEEEEEeEEEEEE---CCE--EEEecCCeEEEEcCCCCEEEEeCCCCCcEEEEEE
Confidence            489995 5899999999999987   356  6799999999999999999888763 55555543

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=98.19  E-value=6.6e-06  Score=67.59  Aligned_cols=58  Identities=17%  Similarity=0.313  Sum_probs=48.5

Q ss_pred             cCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC----eEEEEEECCCCEEEeCCCCeEEEEec
Q 045405          106 DVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN----TFFSKVLTPGKVFLIPRALVHFQLNV  165 (240)
Q Consensus       106 ~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g----~~~~~~l~~GDv~v~P~G~~H~~~N~  165 (240)
                      .|+...-.|.| ..+|++|+++|++.+.+.+. |    +.....+++||++++|+|..|.-...
T Consensus        42 GPn~r~D~H~~-~~eE~Fy~lkG~m~l~v~d~-g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~  103 (176)
T 1zvf_A           42 GPNERTDYHIN-PTPEWFYQKKGSMLLKVVDE-TDAEPKFIDIIINEGDSYLLPGNVPHSPVRF  103 (176)
T ss_dssp             SSBCCSCEEEC-SSCEEEEEEESCEEEEEEEC-SSSSCEEEEEEECTTEEEEECTTCCEEEEEC
T ss_pred             CCCcCCcCcCC-CCceEEEEEeCEEEEEEEcC-CCcccceeeEEECCCCEEEcCCCCCcCCccc
Confidence            34566788955 56999999999999999974 4    45578999999999999999998664

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=98.16  E-value=6.2e-06  Score=70.53  Aligned_cols=69  Identities=20%  Similarity=0.117  Sum_probs=57.5

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      +..+.+++++||+..++|+|+. .|.+|||+|+..    +.     ...+.+||.++.|.|..|....  ++.+++++.+
T Consensus        42 g~~~~lvr~~pG~~~p~H~H~g-~Ee~~VL~G~f~----d~-----~~~~~~Gd~~~~P~g~~H~p~a--~~gc~~~vk~  109 (223)
T 3o14_A           42 ARATSIVRYAPGSRFSAHTHDG-GEEFIVLDGVFQ----DE-----HGDYPAGTYVRNPPTTSHVPGS--AEGCTIFVKL  109 (223)
T ss_dssp             CEEEEEEEECTTEECCCEECTT-CEEEEEEEEEEE----ET-----TEEEETTEEEEECTTCEECCEE--SSCEEEEEEE
T ss_pred             ccEEEEEEECCCCCcccccCCC-CEEEEEEEeEEE----EC-----CeEECCCeEEEeCCCCccccEe--CCCCEEEEEe
Confidence            4567789999999999999975 899999999975    33     2478999999999999998876  5668888776


Q ss_pred             e
Q 045405          177 N  177 (240)
Q Consensus       177 ~  177 (240)
                      .
T Consensus       110 ~  110 (223)
T 3o14_A          110 W  110 (223)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=98.12  E-value=4.5e-05  Score=64.11  Aligned_cols=85  Identities=16%  Similarity=0.120  Sum_probs=70.5

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEcc--CC-----eEEEEEECCCCEEEe-CCCCeEEEEecC-C
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTT--NN-----TFFSKVLTPGKVFLI-PRALVHFQLNVG-N  167 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~--~g-----~~~~~~l~~GDv~v~-P~G~~H~~~N~G-~  167 (240)
                      ..++..+...||...++|=|.++..+++|++|+++....+-  ++     ..-+.++++||+.++ |++.+|.+.|.+ +
T Consensus        69 ~~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s~~  148 (200)
T 3eln_A           69 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT  148 (200)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred             ceEEEEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCCCC
Confidence            47888899999999999999878999999999999887542  11     123679999999999 888899999998 7


Q ss_pred             CCEEEEEEEeCCCC
Q 045405          168 EPATFIPIFNTQNP  181 (240)
Q Consensus       168 ~~a~~i~~~~s~~P  181 (240)
                      ++++-|=++..+..
T Consensus       149 ~~avSlHvY~pp~~  162 (200)
T 3eln_A          149 EPAVSLHLYSPPFD  162 (200)
T ss_dssp             CCEEEEEEEESCCS
T ss_pred             CCEEEEEeCCCCcc
Confidence            88888877765544

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=98.10  E-value=1e-05  Score=71.05  Aligned_cols=58  Identities=17%  Similarity=0.273  Sum_probs=49.6

Q ss_pred             CCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecC
Q 045405          107 VGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVG  166 (240)
Q Consensus       107 pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G  166 (240)
                      |+.-...| |+..+|++|+++|..++.+.+. |+.....+++||++++|+|+.|.-....
T Consensus        40 pN~R~d~H-~~~~dE~FyqlkG~m~l~~~d~-g~~~~V~i~eGemfllP~gv~HsP~r~~   97 (286)
T 2qnk_A           40 PNTRKDYH-IEEGEEVFYQLEGDMVLRVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQRFA   97 (286)
T ss_dssp             CBCCCCEE-ECSSCEEEEEEESCEEEEEEET-TEEEEEEECTTEEEEECTTCCEEEEECT
T ss_pred             CCcCccCc-CCCCCeEEEEEeCeEEEEEEeC-CceeeEEECCCeEEEeCCCCCcCCcccC
Confidence            33347788 8889999999999999999974 6666789999999999999999987743

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=98.09  E-value=3.4e-06  Score=68.26  Aligned_cols=91  Identities=11%  Similarity=-0.069  Sum_probs=63.8

Q ss_pred             cCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCC
Q 045405           77 VFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPR  156 (240)
Q Consensus        77 ~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~  156 (240)
                      ..|...+.+...  |   ..|-...+++++||+.+++|+|+. .|.+|||+|+....-.+.   .....+++|+.++.|+
T Consensus        30 ~~Gv~~k~L~~~--~---e~g~~t~lvr~~pG~~~p~H~H~g-~ee~~VL~G~~~~~~Gd~---~~~~~~~aGsYv~ePp  100 (153)
T 3bal_A           30 DGGITWQLLHSS--P---ETSSWTAIFNCPAGSSFASHIHAG-PGEYFLTKGKMEVRGGEQ---EGGSTAYAPSYGFESS  100 (153)
T ss_dssp             ESCCEEEEEEEE--T---TTTEEEEEEEECTTEEECCEEESS-CEEEEEEESEEEETTCGG---GTSEEEESSEEEEECT
T ss_pred             CCCeEEEEEEEC--C---ccceEEEEEEeCCCCCccCccCCC-CEEEEEEEEEEEecCccc---cCccccCCCeEEEcCC
Confidence            456666666222  2   136788899999999999999986 788999999987642211   0135788999999999


Q ss_pred             CCeEEEEecCCCCEEEEEEEe
Q 045405          157 ALVHFQLNVGNEPATFIPIFN  177 (240)
Q Consensus       157 G~~H~~~N~G~~~a~~i~~~~  177 (240)
                      |..|+.... ++..+++.+..
T Consensus       101 Gs~H~p~~~-~~~~~~~~~~~  120 (153)
T 3bal_A          101 GALHGKTFF-PVESQFYMTFL  120 (153)
T ss_dssp             TCEESCCEE-SSCEEEEEEEE
T ss_pred             CCcccceeC-CCCeEEEEEEE
Confidence            999985332 23344444443

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.80  E-value=0.00017  Score=62.15  Aligned_cols=76  Identities=18%  Similarity=0.131  Sum_probs=56.5

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ++++..+.+ .|...... +| .+|+.||++|++++..   +|+  ..++++||+++||+|..|.+...+.. ..+++.+
T Consensus        46 ~~~~G~~~~-~g~~~v~~-~p-~dE~~~VleG~~~lt~---~g~--~~~~~~Gd~~~ip~G~~~~w~~~~~~-~~~y~~~  116 (238)
T 3myx_A           46 GIAAGIVEF-GTALSVEA-YP-YTEMLVMHRGSVTLTS---GTD--SVTLSTGESAVIGRGTQVRIDAQPES-LWAFCAS  116 (238)
T ss_dssp             SEEEEEEEE-CSEEEESS-CS-SEEEEEEEESEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEECTTE-EEEEEEE
T ss_pred             CeEEEEEEe-cccccccc-CC-CcEEEEEEEeEEEEEC---CCe--EEEEcCCCEEEECCCCEEEEEecCCe-EEEEEec
Confidence            678888888 66554322 22 2799999999999986   366  67899999999999999999886544 4455566


Q ss_pred             e-CCCC
Q 045405          177 N-TQNP  181 (240)
Q Consensus       177 ~-s~~P  181 (240)
                      . ...|
T Consensus       117 ~~~~~p  122 (238)
T 3myx_A          117 TQASGP  122 (238)
T ss_dssp             CSCCSC
T ss_pred             cCCCCC
Confidence            6 3444

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=97.77  E-value=0.00019  Score=59.11  Aligned_cols=81  Identities=16%  Similarity=0.094  Sum_probs=64.0

Q ss_pred             EEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccC------CeEEEEEEC---CCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405          103 IDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN------NTFFSKVLT---PGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus       103 v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~---~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      ....+|.++..|+|..-.++++|++|++...++|-.      |+.....|.   ....+++|+|+.|.+.+.++++++++
T Consensus        58 s~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~l  137 (174)
T 3ejk_A           58 SEVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVA  137 (174)
T ss_dssp             EEECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEE
T ss_pred             EECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEEE
Confidence            345788899999998889999999999999998743      355677787   66799999999999999998777776


Q ss_pred             EEEeC-CCCCc
Q 045405          174 PIFNT-QNPGV  183 (240)
Q Consensus       174 ~~~~s-~~Pg~  183 (240)
                      ...+. -+|..
T Consensus       138 y~~s~~Y~p~~  148 (174)
T 3ejk_A          138 NCTDIPHRQGE  148 (174)
T ss_dssp             EEESSCCCTTS
T ss_pred             EECCCccCCCC
Confidence            55443 24544

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=97.71  E-value=0.00067  Score=57.43  Aligned_cols=81  Identities=19%  Similarity=0.166  Sum_probs=66.4

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEc--cCCeEE----EEEECCCCEEEeCCC--CeEEEEecC-C
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVT--TNNTFF----SKVLTPGKVFLIPRA--LVHFQLNVG-N  167 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~--~~g~~~----~~~l~~GDv~v~P~G--~~H~~~N~G-~  167 (240)
                      .+++..+...||...++|=|. +.-++.|++|+.+..+..  .+|+..    ...+++||+.+++.+  .+|.+.|.+ +
T Consensus        72 ~f~v~~l~W~PGq~spiHDH~-swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~IH~V~N~~~d  150 (211)
T 3uss_A           72 RFSVVSFVWGPGQITPVHDHR-VWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDVHQVSNAFSD  150 (211)
T ss_dssp             SCEEEEEEECTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CEEEEEEEECCCCcCCCCCCC-eeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCEEEEccCCCC
Confidence            478889999999999999997 899999999999877643  234321    378999999999987  899999984 7


Q ss_pred             CCEEEEEEEeC
Q 045405          168 EPATFIPIFNT  178 (240)
Q Consensus       168 ~~a~~i~~~~s  178 (240)
                      ++++-|=++..
T Consensus       151 ~~avSLHvYg~  161 (211)
T 3uss_A          151 RTSISIHVYGA  161 (211)
T ss_dssp             SCEEEEEEESS
T ss_pred             CCEEEEEEcCC
Confidence            88888877753

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=97.68  E-value=0.00019  Score=55.28  Aligned_cols=62  Identities=15%  Similarity=0.091  Sum_probs=48.1

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405           98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV  165 (240)
Q Consensus        98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~  165 (240)
                      .........||...- +++ ..+|+.|||+|++++...  +|+  ..++++||++++|+|....+.-.
T Consensus        42 ~~~GvWe~tPG~~~~-~~~-~~~E~~~iLeG~~~lt~d--dG~--~~~l~aGD~~~~P~G~~gtWev~  103 (116)
T 3es4_A           42 TIVAVWMAEPGIYNY-AGR-DLEETFVVVEGEALYSQA--DAD--PVKIGPGSIVSIAKGVPSRLEIL  103 (116)
T ss_dssp             CEEEEEEECSEEEEE-CCC-SEEEEEEEEECCEEEEET--TCC--CEEECTTEEEEECTTCCEEEEEC
T ss_pred             EEEEEEecCCceeEC-eeC-CCcEEEEEEEeEEEEEeC--CCe--EEEECCCCEEEECCCCeEEEEEe
Confidence            556677899997542 333 235999999999998863  465  57999999999999999888654

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=97.64  E-value=0.0008  Score=53.49  Aligned_cols=96  Identities=11%  Similarity=0.066  Sum_probs=66.5

Q ss_pred             cCCceEEEecc-cCCCCCCccceEEE-EEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCC-EEE
Q 045405           77 VFKRAVTFGDV-FGFPAVNTQGVALF-RIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGK-VFL  153 (240)
Q Consensus        77 ~~G~~v~~~~~-~~~P~l~~~gls~~-~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GD-v~v  153 (240)
                      ...|.++.+.. .+.|- .-  -.++ ....+||....+|.|....|++++++|+..+.+.|.. ...+..|.+.. .+.
T Consensus        15 D~RG~L~~~e~~~~ipf-~i--kRvy~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldDg~-~~~~~~L~~~~~gL~   90 (141)
T 2pa7_A           15 DSRGSLVAIEENKNIPF-SI--KRVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGN-IIQEITLDSPAVGLY   90 (141)
T ss_dssp             ETTEEEEEEETTTTSSS-CC--CEEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSS-CEEEEEECCTTEEEE
T ss_pred             cCCCcEEEEeccCCCCC-Cc--cEEEEEEecCCCCEECcCcCCCceEEEEEEccEEEEEEECCc-EEEEEEECCCCcEEE
Confidence            33556777655 33443 21  1233 3345688889999999999999999999999986532 23355665554 489


Q ss_pred             eCCCCeEEEEecCCCCEEEEEEEe
Q 045405          154 IPRALVHFQLNVGNEPATFIPIFN  177 (240)
Q Consensus       154 ~P~G~~H~~~N~G~~~a~~i~~~~  177 (240)
                      +|+|+.|.+.+.++. ++++.+-+
T Consensus        91 IppgvWh~~~~~s~~-avllvlas  113 (141)
T 2pa7_A           91 VGPAVWHEMHDFSSD-CVMMVLAS  113 (141)
T ss_dssp             ECTTCEEEEECCCTT-CEEEEEES
T ss_pred             eCCCEEEEEEEcCCC-eEEEEECC
Confidence            999999999998875 66665443

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=97.52  E-value=0.0019  Score=52.91  Aligned_cols=132  Identities=13%  Similarity=0.102  Sum_probs=86.4

Q ss_pred             CcCCceEEEecccCCC-CCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEE-EEEEEccCCeEEEEE----ECCC
Q 045405           76 DVFKRAVTFGDVFGFP-AVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTV-LVGLVTTNNTFFSKV----LTPG  149 (240)
Q Consensus        76 ~~~G~~v~~~~~~~~P-~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~-~v~~v~~~g~~~~~~----l~~G  149 (240)
                      .+.||+.++.....-+ .-.....+....-|.+|....+|.. +++|+.|...|.. ++.+++++|+..+.+    +.+|
T Consensus        26 HPEGG~yret~rs~~~~~~~R~~~T~IYfLL~~g~~S~~HRv-~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~G  104 (170)
T 1yud_A           26 HVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRL-TADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAG  104 (170)
T ss_dssp             CTTSSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCEEEEEC-SSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTT
T ss_pred             CCCCceEEEeecCCCCCCCCCccceEEEEEECCCCCCeeEEc-CCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCcccC
Confidence            4677777776554311 1122235777788999997777777 5899999999985 888888888754444    6789


Q ss_pred             CE--EEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 045405          150 KV--FLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIR  217 (240)
Q Consensus       150 Dv--~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~~~lf~s~~~~p~~vla~af~v~~~~v~~l~  217 (240)
                      +.  ++||+|..+...+.+.+ ..+++  ..-.||+..-..   .   -.+.+-|.+.|---++.|++|-
T Consensus       105 e~pQ~vVP~G~wqaa~~~~g~-~~LV~--C~VaPGF~f~df---e---l~~~~~L~~~~P~~~~~I~~lt  165 (170)
T 1yud_A          105 ERPQFLVPKGCIFGSAMNQDG-FSLVG--CMVSPGFTFDDF---E---LFSQEALLAMYPQHKAVVQKLS  165 (170)
T ss_dssp             EESCEEECTTCEEEEEESSSS-EEEEE--EEESSCCCGGGC---C---BCBHHHHHHSCCTTHHHHTTSC
T ss_pred             ceeEEEECCCCEEEEEECCCC-cEEEE--EEECCCccCCce---E---EcCHHHHHhHCchhHHHHHHhh
Confidence            99  99999999999887323 33332  223577644222   1   1345566665655566665553

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.43  E-value=0.00077  Score=58.10  Aligned_cols=63  Identities=13%  Similarity=0.046  Sum_probs=50.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV  165 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~  165 (240)
                      .++.......||...+.++  +.+|+.|||+|++++.-  .+|+  ..++++||+++||+|..-.+.-.
T Consensus       166 ~~~~GiW~~tpG~~~~~~~--~~~E~~~ILeG~v~lt~--~~G~--~~~~~aGD~~~~P~G~~~tWev~  228 (238)
T 3myx_A          166 TLRIGVWDSTPYERISRPH--KIHELMNLIEGRVVLSL--ENGS--SLTVNTGDTVFVAQGAPCKWTST  228 (238)
T ss_dssp             SCEEEEEEECCEEBCCEEC--SSCEEEEEEECCEEEEE--TTSC--EEEECTTCEEEECTTCEEEEEES
T ss_pred             CEEEeEEEeCCCEEECCcC--CCCEEEEEEEeEEEEEe--CCCC--EEEECCCCEEEECCCCEEEEEEC
Confidence            4788889999988554333  35799999999998874  3566  57999999999999998887765

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=97.37  E-value=0.0012  Score=56.41  Aligned_cols=73  Identities=7%  Similarity=-0.083  Sum_probs=52.4

Q ss_pred             ceEEEEEEEcCCc--ccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec--CCCCEEE
Q 045405           97 GVALFRIDLDVGG--INPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV--GNEPATF  172 (240)
Q Consensus        97 gls~~~v~l~pGg--~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~--G~~~a~~  172 (240)
                      ++-+....+....  ..++|||. .-|++||++|++. .+......  .+.+++||++++|+|.+|.+...  ++++...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~v~~G~~~-~i~~~~~~--~~~l~~g~l~~i~p~~~h~~~~~~~~~~~~~~   81 (276)
T 3gbg_A            6 SFQTNVYRMSKFDTYIFNNLYIN-DYKMFWIDSGIAK-LIDKNCLV--SYEINSSSIILLKKNSIQRFSLTSLSDENINV   81 (276)
T ss_dssp             TEEEEEEEECTTCEEEEEEEECS-SCEEEEESSSCEE-EEETTTTE--EEEECTTEEEEECTTCEEEEEEEECCSSCEEE
T ss_pred             hhhhhhhhhhcccchhccHhhhc-ceEEEEEecCceE-EECCccce--eEEEcCCCEEEEcCCCceeeccccCCCcceEE
Confidence            4455566666654  36789995 5999999999999 66421111  46899999999999999998765  3344444


Q ss_pred             E
Q 045405          173 I  173 (240)
Q Consensus       173 i  173 (240)
                      +
T Consensus        82 ~   82 (276)
T 3gbg_A           82 S   82 (276)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=97.01  E-value=0.003  Score=52.92  Aligned_cols=77  Identities=16%  Similarity=0.166  Sum_probs=59.9

Q ss_pred             EcCCcccCCccCCCCCeEEEEee-CEEEEEEEccC-----CeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeC
Q 045405          105 LDVGGINPPHTHPRGTEAGIVTR-GTVLVGLVTTN-----NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNT  178 (240)
Q Consensus       105 l~pGg~~~pH~Hp~a~Ei~yVl~-G~~~v~~v~~~-----g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s  178 (240)
                      -.+|.++..|+|+ -.++++|++ |++...++|-.     |+.....|..+..++||+|+.|.+.+.++. ++++...+.
T Consensus        67 s~~GvlRGlH~h~-q~Klv~~~~~G~v~dV~VDlR~SpTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd~-a~~~y~~s~  144 (197)
T 1nxm_A           67 SRKNVLRGLHAEP-WDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDF-VAYSYLVND  144 (197)
T ss_dssp             EETTBEEEEEECS-SCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSE-EEEEEEESS
T ss_pred             CCCCCcceeeecc-cceEEEEcCCCEEEEEEEECCCCCCCCeEEEEEeCCCcEEEeCCCeEEEEEeccCC-eEEEEECCC
Confidence            3678899999995 589999999 99877677655     667788999999999999999999998755 555543332


Q ss_pred             -CCCCc
Q 045405          179 -QNPGV  183 (240)
Q Consensus       179 -~~Pg~  183 (240)
                       -+|+.
T Consensus       145 ~Y~p~~  150 (197)
T 1nxm_A          145 YWALEL  150 (197)
T ss_dssp             CCCGGG
T ss_pred             ccChhh
Confidence             24443

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=97.01  E-value=0.0057  Score=50.64  Aligned_cols=71  Identities=18%  Similarity=0.169  Sum_probs=55.1

Q ss_pred             cCCcccCCccC--CCCCeEEEEeeCEEEEEEEccC------CeEEEEEECC--CCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405          106 DVGGINPPHTH--PRGTEAGIVTRGTVLVGLVTTN------NTFFSKVLTP--GKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus       106 ~pGg~~~pH~H--p~a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      .+|.++..|+|  ..-.++++|++|++...++|-.      |+.....|.+  +..++||+|+.|.+.+.+++ ++++..
T Consensus        56 ~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~  134 (185)
T 1ep0_A           56 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDE-CIVNYK  134 (185)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             cCCeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEEe
Confidence            47889999999  6678999999999866666532      3666677754  68999999999999999876 555543


Q ss_pred             Ee
Q 045405          176 FN  177 (240)
Q Consensus       176 ~~  177 (240)
                      .+
T Consensus       135 ~s  136 (185)
T 1ep0_A          135 CT  136 (185)
T ss_dssp             ES
T ss_pred             cC
Confidence            33

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=96.99  E-value=0.0024  Score=55.53  Aligned_cols=72  Identities=17%  Similarity=0.241  Sum_probs=55.7

Q ss_pred             EEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeC--CCCeEEEEecCC-CCEEEEEE
Q 045405          100 LFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIP--RALVHFQLNVGN-EPATFIPI  175 (240)
Q Consensus       100 ~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P--~G~~H~~~N~G~-~~a~~i~~  175 (240)
                      +....+.||.-+++|-|.+-+.+.||++|+++..  |..|.  ..++++||+-...  +|+.|.-.|..+ +++.++-+
T Consensus        66 ln~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS~Gn--~~~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l~~lQl  140 (256)
T 2vec_A           66 LNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYR--DSEGN--HVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQL  140 (256)
T ss_dssp             EEEEEECTTCEEEEECCSSEEEEEEEEESEEEEE--ETTSC--EEEEETTEEEEECCCTTCCEEEEECCSSSCEEEEEE
T ss_pred             ccccccCCCCccCCcCCCCcEEEEEEEeeEEEEE--eCCCC--EEEECCCeEEEEECCCCeEEEEEECCCCceEEEEEE
Confidence            4467789998899999977555789999998765  55565  5789999999994  557999999754 57666543

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=96.98  E-value=0.0037  Score=56.31  Aligned_cols=71  Identities=24%  Similarity=0.178  Sum_probs=53.4

Q ss_pred             EEEcC-CcccCCccCCCCCeEEEEeeCEEEEEEE-ccC---------------------------------CeEEEEEEC
Q 045405          103 IDLDV-GGINPPHTHPRGTEAGIVTRGTVLVGLV-TTN---------------------------------NTFFSKVLT  147 (240)
Q Consensus       103 v~l~p-Gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v-~~~---------------------------------g~~~~~~l~  147 (240)
                      +-+.| |+..++|+.+. .-++..++|+=++.+. .+.                                 ...++.+|+
T Consensus       145 ~~~gp~g~~~~~H~D~~-dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~  223 (342)
T 1vrb_A          145 VYAAKNGGGFKAHFDAY-TNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLT  223 (342)
T ss_dssp             EEEECSSCCCCSEECSS-EEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEEC
T ss_pred             EEEeCCCCCCCCeECCh-hcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEEC
Confidence            55666 77899999854 6788888999888877 332                                 012467999


Q ss_pred             CCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405          148 PGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus       148 ~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      +||++++|+|..|+..+.++++..-++
T Consensus       224 pGD~LyiP~gwwH~v~s~~~~~slsvs  250 (342)
T 1vrb_A          224 PGTMLYLPRGLWHSTKSDQATLALNIT  250 (342)
T ss_dssp             TTCEEEECTTCEEEEECSSCEEEEEEE
T ss_pred             CCcEEEeCCCccEEEEECCCCceEEEE
Confidence            999999999999999997544444443

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=96.89  E-value=0.0075  Score=49.88  Aligned_cols=71  Identities=17%  Similarity=0.151  Sum_probs=54.8

Q ss_pred             cCCcccCCccC--CCCCeEEEEeeCEEEEEEEccC------CeEEEEEECC--CCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405          106 DVGGINPPHTH--PRGTEAGIVTRGTVLVGLVTTN------NTFFSKVLTP--GKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus       106 ~pGg~~~pH~H--p~a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      .+|.++..|+|  ..-.++++|++|++...++|-.      |+.....|.+  +..++||+|+.|.+.+.+++ ++++..
T Consensus        57 ~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~  135 (184)
T 2ixk_A           57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEY-AEFLYK  135 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             CCCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCC-EEEEEe
Confidence            47889999999  6668999999999865555532      4666677754  68999999999999999876 555543


Q ss_pred             Ee
Q 045405          176 FN  177 (240)
Q Consensus       176 ~~  177 (240)
                      .+
T Consensus       136 ~s  137 (184)
T 2ixk_A          136 TT  137 (184)
T ss_dssp             ES
T ss_pred             CC
Confidence            33

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=96.88  E-value=0.0047  Score=51.99  Aligned_cols=68  Identities=16%  Similarity=0.228  Sum_probs=53.9

Q ss_pred             cCCcccCCccCC---CCCeEEEEeeCEEEEEEEccC------CeEEEEEECC--CCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405          106 DVGGINPPHTHP---RGTEAGIVTRGTVLVGLVTTN------NTFFSKVLTP--GKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus       106 ~pGg~~~pH~Hp---~a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      .+|.++..|+|.   .-.++++|++|++...++|-.      |+.....|.+  +..++||+|+.|.+.+.++. ++++.
T Consensus        78 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~-a~~~Y  156 (205)
T 3ryk_A           78 EAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPH-TIVMY  156 (205)
T ss_dssp             STTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSS-EEEEE
T ss_pred             CCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCC-EEEEE
Confidence            578899999994   358999999999876666632      4666777865  79999999999999999865 55543

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=96.77  E-value=0.0014  Score=55.76  Aligned_cols=65  Identities=18%  Similarity=0.201  Sum_probs=52.8

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405           98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus        98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      -.+..++++||...++|.| ...|+ +||+|++.    +. +    .++.+|+.+..|.|..|.... |++.+.++.
T Consensus       146 E~v~l~r~~~G~~~~~~~h-gG~Ei-lVL~G~~~----d~-~----~~~~~GsWlR~P~gs~h~~~a-g~~g~~i~~  210 (223)
T 3o14_A          146 ETVTHRKLEPGANLTSEAA-GGIEV-LVLDGDVT----VN-D----EVLGRNAWLRLPEGEALSATA-GARGAKIWM  210 (223)
T ss_dssp             CEEEEEEECTTCEEEECCS-SCEEE-EEEEEEEE----ET-T----EEECTTEEEEECTTCCEEEEE-EEEEEEEEE
T ss_pred             cEEEEEEECCCCccCCCCC-CcEEE-EEEEeEEE----EC-C----ceECCCeEEEeCCCCccCcEE-CCCCeEEEE
Confidence            3466788999999999999 77886 99999975    22 3    478999999999999999877 666676653

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=96.77  E-value=0.017  Score=48.51  Aligned_cols=70  Identities=10%  Similarity=0.158  Sum_probs=54.4

Q ss_pred             cCCcccCCccCCC---CCeEEEEeeCEEEEEEEccC------CeEEEEEECC--CCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405          106 DVGGINPPHTHPR---GTEAGIVTRGTVLVGLVTTN------NTFFSKVLTP--GKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus       106 ~pGg~~~pH~Hp~---a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      .+|.++..|+|..   -.++++|++|++...++|-.      |+.....|.+  +..++||+|+.|.+.+.+++ ++++.
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y  133 (205)
T 1oi6_A           55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDD-TVMSY  133 (205)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTT-EEEEE
T ss_pred             CCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCC-eEEEE
Confidence            5788899999953   58999999999876666632      3566778866  58999999999999999876 55544


Q ss_pred             EE
Q 045405          175 IF  176 (240)
Q Consensus       175 ~~  176 (240)
                      ..
T Consensus       134 ~~  135 (205)
T 1oi6_A          134 ML  135 (205)
T ss_dssp             EE
T ss_pred             ec
Confidence            33

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=96.65  E-value=0.0078  Score=51.78  Aligned_cols=72  Identities=17%  Similarity=0.153  Sum_probs=55.7

Q ss_pred             EEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEe--CCCCeEEEEecCC-CCEEEEEE
Q 045405          100 LFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLI--PRALVHFQLNVGN-EPATFIPI  175 (240)
Q Consensus       100 ~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~--P~G~~H~~~N~G~-~~a~~i~~  175 (240)
                      +....+.||.-+++|-|.+-+.+.||++|++.-.  |+-|.  ..++++||+-..  -+|+.|.-.|..+ +++.++=+
T Consensus        43 ~n~d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS~Gn--~~~i~~GdvQ~MtAG~GI~HsE~~~~~~~~l~~lQl  117 (242)
T 1tq5_A           43 INDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ--DSMGN--KEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQI  117 (242)
T ss_dssp             EEEEEECTTCEEEEEEECSCEEEEEEEESEEEEE--ESSSC--EEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEE
T ss_pred             eccceeCCCCcCCCcCCCCcEEEEEEEEeEEEEE--eCCCC--cEEECCCcEEEEECCCCcEEEEEcCCCCCeEEEEEE
Confidence            4467788998889999977666889999998765  55465  578999999998  5558999999753 56666533

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=96.65  E-value=0.0042  Score=53.30  Aligned_cols=77  Identities=21%  Similarity=0.123  Sum_probs=57.2

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEEEEeeC---EEEEEEEccCC-------------eEE------EEEECCCCEEEeC
Q 045405           98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRG---TVLVGLVTTNN-------------TFF------SKVLTPGKVFLIP  155 (240)
Q Consensus        98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G---~~~v~~v~~~g-------------~~~------~~~l~~GDv~v~P  155 (240)
                      -.--.+.+.||+..|.|+|+.-.|-+++.-|   .+++...++++             +..      ..+|++|+.+.++
T Consensus       106 YaeK~Li~~~gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESiTl~  185 (246)
T 3kmh_A          106 YAEKIMHVRDAQVTPMHFHWRKREDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESICLP  185 (246)
T ss_dssp             EEEEEEEECBTCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEEEEC
T ss_pred             ceeeEeeccCCCCCCcccCCCccccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeEecC
Confidence            4455788999999999999999999999998   44544443332             111      3589999999999


Q ss_pred             CCCeEEEEecCCC-CEEEEE
Q 045405          156 RALVHFQLNVGNE-PATFIP  174 (240)
Q Consensus       156 ~G~~H~~~N~G~~-~a~~i~  174 (240)
                      +|..|++...+.. ++.+-.
T Consensus       186 Pg~~H~F~ae~g~G~vligE  205 (246)
T 3kmh_A          186 PGLYHSFWAEAGFGDVLVGE  205 (246)
T ss_dssp             TTEEEEEEECTTSCCEEEEE
T ss_pred             CCCEEEEEecCCCccEEEEE
Confidence            9999999886642 455433

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=96.64  E-value=0.015  Score=48.09  Aligned_cols=69  Identities=14%  Similarity=0.133  Sum_probs=53.4

Q ss_pred             cCCcccCCccCC---CCCeEEEEeeCEEEEEEEccC------CeEEEEEECC--CCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405          106 DVGGINPPHTHP---RGTEAGIVTRGTVLVGLVTTN------NTFFSKVLTP--GKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus       106 ~pGg~~~pH~Hp---~a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      .+|.++..|+|.   .-.++++|++|++...++|-.      |+.....|.+  +..++||+|+.|.+.+.++. ++++.
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y  133 (183)
T 1dzr_A           55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEY-AEFLY  133 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             CCCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEE
Confidence            478899999995   568999999999865566532      4556677754  68999999999999998866 55443


Q ss_pred             E
Q 045405          175 I  175 (240)
Q Consensus       175 ~  175 (240)
                      .
T Consensus       134 ~  134 (183)
T 1dzr_A          134 K  134 (183)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=96.63  E-value=0.011  Score=49.48  Aligned_cols=69  Identities=14%  Similarity=0.144  Sum_probs=53.2

Q ss_pred             EcCCcccCCccCCC---CCeEEEEeeCEEEEEEEccC------CeEEEEEECC--CCEEEeCCCCeEEEEecCCCCEEEE
Q 045405          105 LDVGGINPPHTHPR---GTEAGIVTRGTVLVGLVTTN------NTFFSKVLTP--GKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus       105 l~pGg~~~pH~Hp~---a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      -.+|.++..|+|..   -.++++|++|++...++|-.      |+.....|.+  +..++||+|+.|.+.+.++. ++++
T Consensus        72 s~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd~-a~~l  150 (196)
T 1wlt_A           72 SRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDS-IVIY  150 (196)
T ss_dssp             ECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSE-EEEE
T ss_pred             CCCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEE
Confidence            35788899999953   47999999999966666532      4566777764  79999999999999998764 5554


Q ss_pred             E
Q 045405          174 P  174 (240)
Q Consensus       174 ~  174 (240)
                      .
T Consensus       151 y  151 (196)
T 1wlt_A          151 F  151 (196)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=96.58  E-value=0.0042  Score=51.52  Aligned_cols=65  Identities=23%  Similarity=0.458  Sum_probs=49.4

Q ss_pred             EEEEEcCCc-ccCCccCCCCCeEEEEeeCEEEEEEEccCC----------------------------------eEEEEE
Q 045405          101 FRIDLDVGG-INPPHTHPRGTEAGIVTRGTVLVGLVTTNN----------------------------------TFFSKV  145 (240)
Q Consensus       101 ~~v~l~pGg-~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g----------------------------------~~~~~~  145 (240)
                      ..+-+.++| ..++|+.+. .-+..+++|+=+..+..+..                                  +.++.+
T Consensus       126 ~~~wiG~~gs~t~~H~D~~-~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~  204 (235)
T 4gjz_A          126 INAWFGPQGTISPLHQDPQ-QNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCI  204 (235)
T ss_dssp             EEEEEECTTCEEEEECCSS-EEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEE
T ss_pred             eEEEEeCCCCCceeeeccc-cceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEE
Confidence            344566655 466787754 67888999999988875531                                  124678


Q ss_pred             ECCCCEEEeCCCCeEEEEecC
Q 045405          146 LTPGKVFLIPRALVHFQLNVG  166 (240)
Q Consensus       146 l~~GDv~v~P~G~~H~~~N~G  166 (240)
                      |++||++++|+|..|...|.+
T Consensus       205 l~pGD~LyiP~gW~H~V~~l~  225 (235)
T 4gjz_A          205 LSPGEILFIPVKYWHYVRALD  225 (235)
T ss_dssp             ECTTCEEEECTTCEEEEEESS
T ss_pred             ECCCCEEEeCCCCcEEEEECC
Confidence            999999999999999999975

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=96.56  E-value=0.014  Score=45.53  Aligned_cols=70  Identities=20%  Similarity=0.160  Sum_probs=54.9

Q ss_pred             CCcccCCc----cCCCCCeEEEEeeCEEEEEEEccCCe---EEEEEECCCCEEEeCCCCeEEEEecCCCCEEE-EEEEe
Q 045405          107 VGGINPPH----THPRGTEAGIVTRGTVLVGLVTTNNT---FFSKVLTPGKVFLIPRALVHFQLNVGNEPATF-IPIFN  177 (240)
Q Consensus       107 pGg~~~pH----~Hp~a~Ei~yVl~G~~~v~~v~~~g~---~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~-i~~~~  177 (240)
                      |+++.+.|    +|++.-+.+.|++|++++...+.+|.   .......+|+..++|++..|.+.-..+ ++.+ +.++.
T Consensus        23 P~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsd-d~~f~leFyc  100 (127)
T 3bb6_A           23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTD-DTYFNIDFFV  100 (127)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESST-TCEEEEEEEE
T ss_pred             hHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCC-CEEEEEEEEe
Confidence            67788899    59888899999999999987766554   234567899999999999999997555 4555 55553

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=96.53  E-value=0.014  Score=48.93  Aligned_cols=68  Identities=13%  Similarity=0.150  Sum_probs=54.2

Q ss_pred             cCCcccCCccCC---CCCeEEEEeeCEEEEEEEccC------CeEEEEEECC--CCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405          106 DVGGINPPHTHP---RGTEAGIVTRGTVLVGLVTTN------NTFFSKVLTP--GKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus       106 ~pGg~~~pH~Hp---~a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      .+|.++.+|+|.   .-..+++|++|++.--++|-.      |+.....|.+  +..++||+|+.|.+.+.+++ ++++.
T Consensus        52 ~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~VDlR~~SpTfG~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~-a~~~Y  130 (201)
T 4hn1_A           52 HRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDD-ATLVF  130 (201)
T ss_dssp             CTTBEEEEEEECSSSCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSTT-EEEEE
T ss_pred             CCCceEEEEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCcceEEEeecCCC-eEEEE
Confidence            678899999984   468999999999887788732      5656667765  88999999999999998765 55443

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=96.47  E-value=0.02  Score=48.51  Aligned_cols=68  Identities=16%  Similarity=0.110  Sum_probs=52.6

Q ss_pred             cCCcccCCccCCC---CCeEEEEeeCEEEEEEEccC------CeEEEEEECC--CCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405          106 DVGGINPPHTHPR---GTEAGIVTRGTVLVGLVTTN------NTFFSKVLTP--GKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus       106 ~pGg~~~pH~Hp~---a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      .+|.++..|+|..   -.++++|++|++...++|-.      |+.....|.+  +..++||+|+.|.+.+.+++ ++++.
T Consensus        63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~-a~~ly  141 (216)
T 2c0z_A           63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDE-ATLCY  141 (216)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             CCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCC-eEEEE
Confidence            4788999999954   58999999999865556532      4556677765  58999999999999999866 54443

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=96.45  E-value=0.028  Score=47.85  Aligned_cols=68  Identities=16%  Similarity=0.175  Sum_probs=52.9

Q ss_pred             cCCcccCCccCCC---CCeEEEEeeCEEEEEEEccC------CeEEEEEECC--CCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405          106 DVGGINPPHTHPR---GTEAGIVTRGTVLVGLVTTN------NTFFSKVLTP--GKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus       106 ~pGg~~~pH~Hp~---a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      .+|.++..|+|..   -.++++|++|++...++|-.      |+.....|.+  +..++||+|+.|.+.+.+++ ++++.
T Consensus        74 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~-a~vly  152 (225)
T 1upi_A           74 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN-STVMY  152 (225)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS-EEEEE
T ss_pred             CCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCC-EEEEE
Confidence            5788899999953   47999999999876666532      4556677755  58999999999999999876 55443

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=96.27  E-value=0.016  Score=52.15  Aligned_cols=73  Identities=16%  Similarity=0.221  Sum_probs=55.6

Q ss_pred             EEEcCC-cccCCccCCCCCeEEEEeeCEEEEEEEccCC-----------------------------------eEEEEEE
Q 045405          103 IDLDVG-GINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-----------------------------------TFFSKVL  146 (240)
Q Consensus       103 v~l~pG-g~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-----------------------------------~~~~~~l  146 (240)
                      +-+.+. ...++|+.+. .-+..+++|+=++.+..+..                                   +.++.+|
T Consensus       187 l~iG~~gs~t~~H~D~~-~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l  265 (349)
T 3d8c_A          187 LLIGMEGNVTPAHYGEQ-QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVV  265 (349)
T ss_dssp             EEEECTTCEEEEECCSE-EEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEEE
T ss_pred             EEEECCCCCccceECCh-hcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEEE
Confidence            556654 5678999876 78889999998888765421                                   3467899


Q ss_pred             CCCCEEEeCCCCeEEEEecCC-CCEEEEEEE
Q 045405          147 TPGKVFLIPRALVHFQLNVGN-EPATFIPIF  176 (240)
Q Consensus       147 ~~GDv~v~P~G~~H~~~N~G~-~~a~~i~~~  176 (240)
                      ++||++++|+|..|...|.++ ...+.+.+.
T Consensus       266 ~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w  296 (349)
T 3d8c_A          266 GPGDVLYIPMYWWHHIESLLNGGITITVNFW  296 (349)
T ss_dssp             CTTCEEEECTTCEEEEEECTTSCCEEEEEEE
T ss_pred             CCCCEEEECCCCcEEEEEcCCCCcEEEEEEE
Confidence            999999999999999999873 445555544

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=96.11  E-value=0.048  Score=47.43  Aligned_cols=73  Identities=21%  Similarity=0.181  Sum_probs=58.7

Q ss_pred             ccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeE-EEEecCCCCEEEE
Q 045405           95 TQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVH-FQLNVGNEPATFI  173 (240)
Q Consensus        95 ~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H-~~~N~G~~~a~~i  173 (240)
                      +-|-+-.++.++|+--.|+-.|.-..| +||++|++.++     +    ..+.+|...++|+|+.- .++-.|+++++++
T Consensus        88 d~GaSTl~V~fpp~~~~P~Gi~~ad~E-~fVL~G~i~~G-----~----~~l~~h~Y~f~PaGV~~~~~kv~~~~g~~iL  157 (303)
T 2qdr_A           88 DSGASTSRVVLPPKFEAPSGIFTADLE-IFVIKGAIQLG-----E----WQLNKHSYSFIPAGVRIGSWKVLGGEEAEIL  157 (303)
T ss_dssp             TTSCEEEEEEECTTCEECCBEESSCEE-EEEEESEEEET-----T----EEECTTEEEEECTTCCBCCEEEETTSCEEEE
T ss_pred             CCCcceEEEEecCCCCCCCcccccceE-EEEEEeEEEeC-----C----EEecCCceEEecCCCccCceeecCCCCcEEE
Confidence            347788999999999999988855566 99999999875     3    47899999999999944 4555688888888


Q ss_pred             EEEe
Q 045405          174 PIFN  177 (240)
Q Consensus       174 ~~~~  177 (240)
                      .+-+
T Consensus       158 ~fe~  161 (303)
T 2qdr_A          158 WMEN  161 (303)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            7743

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=95.91  E-value=0.05  Score=50.72  Aligned_cols=65  Identities=18%  Similarity=0.227  Sum_probs=49.3

Q ss_pred             EEEEEcCCcc--cCCccCCCCCeEEEEeeCEEEEEEEccCC----------------eEEEEEECCCCEEEeCCCCeEEE
Q 045405          101 FRIDLDVGGI--NPPHTHPRGTEAGIVTRGTVLVGLVTTNN----------------TFFSKVLTPGKVFLIPRALVHFQ  162 (240)
Q Consensus       101 ~~v~l~pGg~--~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g----------------~~~~~~l~~GDv~v~P~G~~H~~  162 (240)
                      ..+.+.|+|.  .++||-+ .+-+++.++|+=+..+..+..                ..+..+|++||++++|+|..|+.
T Consensus       141 ~n~y~~~~g~~g~~~H~D~-~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~  219 (442)
T 2xdv_A          141 SNVYITPAGSQGLPPHYDD-VEVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQA  219 (442)
T ss_dssp             EEEEEECTTCBCSCSEECS-SEEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEE
T ss_pred             cceEECCCCCCCccceECC-cceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEE
Confidence            3445666664  3699974 467888888998888766531                12468999999999999999999


Q ss_pred             EecC
Q 045405          163 LNVG  166 (240)
Q Consensus       163 ~N~G  166 (240)
                      .+.+
T Consensus       220 ~s~~  223 (442)
T 2xdv_A          220 DTPA  223 (442)
T ss_dssp             ECCS
T ss_pred             EecC
Confidence            9875

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=95.65  E-value=0.036  Score=49.64  Aligned_cols=72  Identities=17%  Similarity=0.075  Sum_probs=53.3

Q ss_pred             EEEEEcCC-cccCCccCCCCCeEEEEeeCEEEEEEEccC------------------------------CeEEEEEECCC
Q 045405          101 FRIDLDVG-GINPPHTHPRGTEAGIVTRGTVLVGLVTTN------------------------------NTFFSKVLTPG  149 (240)
Q Consensus       101 ~~v~l~pG-g~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~------------------------------g~~~~~~l~~G  149 (240)
                      ..+-+.|. +..++|+-+. .-+...++|+=++.+..+.                              .+.++.+|++|
T Consensus       169 s~l~~g~~g~~~~~H~D~~-~n~~~qv~G~K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~L~pG  247 (338)
T 3al5_A          169 SVFRISSPGLQLWTHYDVM-DNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAG  247 (338)
T ss_dssp             EEEEEECTTCEEEEECCSS-EEEEEECSSCEEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEEEEECTT
T ss_pred             ceeEECCCCCCccceECCc-ccEEEEEEEEEEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEEEEECCC
Confidence            34445554 4577898765 6788889999888877542                              02467899999


Q ss_pred             CEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405          150 KVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus       150 Dv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      |++++|+|..|+..|.+  ..+.+.+
T Consensus       248 D~LyiP~gWwH~v~~l~--~sisvn~  271 (338)
T 3al5_A          248 DVLFIPALWFHNVISEE--FGVGVNI  271 (338)
T ss_dssp             CEEEECTTCEEEEEESS--CEEEEEE
T ss_pred             CEEEECCCCeEEEeeCC--CEEEEEE
Confidence            99999999999999984  4455553

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=95.58  E-value=0.063  Score=46.92  Aligned_cols=94  Identities=14%  Similarity=0.105  Sum_probs=59.6

Q ss_pred             ceEEEecccCCCCCCccceEEEEEEEcCCcc---cCCccCCCC--C------eEEEE-e---eCEEEEEEEccCCe-EEE
Q 045405           80 RAVTFGDVFGFPAVNTQGVALFRIDLDVGGI---NPPHTHPRG--T------EAGIV-T---RGTVLVGLVTTNNT-FFS  143 (240)
Q Consensus        80 ~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~---~~pH~Hp~a--~------Ei~yV-l---~G~~~v~~v~~~g~-~~~  143 (240)
                      ..+......+.|   .-.+-+..+ +.|||.   .|||.|++.  .      |+.|- +   +|.+.-.+...++. -..
T Consensus       138 R~V~~i~~~~~~---a~~LlvgEv-~tpgG~WSSyPpHkHd~~~~~~e~~lEE~YYf~~~~~~gf~~q~vyt~d~~~de~  213 (270)
T 2qjv_A          138 RLVHNILPDSQL---ADSLLVVEV-YTNAGATSSWPAHXHDTAVEGQETYLEETYYHRFNPPQGFCLQRVYTDDRSLDEC  213 (270)
T ss_dssp             EEEEEEECTTSC---CSSCEEEEE-EECTTCEESCSCEECEEEETTTEEECEEEEEEEEESTTCEEEEEEECTTSSSEEE
T ss_pred             hhhhhhcCCCCC---cceEEEEEE-EcCCCccccCCCcccccccCcccccceeEEEEECCCCCCEEEEEEeCCCCCCceE
Confidence            444343333444   334667776 888885   499999764  4      88865 3   35655544333331 135


Q ss_pred             EEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeC
Q 045405          144 KVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNT  178 (240)
Q Consensus       144 ~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s  178 (240)
                      ..++-||++.+|+|. |-....-.....++-+.-.
T Consensus       214 ~~V~~~d~VlvP~Gy-Hp~~a~pGy~~YylwvMaG  247 (270)
T 2qjv_A          214 MAVYNRDVVXVPXGY-HPVATIAGYDNYYLNVMAG  247 (270)
T ss_dssp             EEEETTCEEEESSSB-CCEEECTTCEEEEEEEEEC
T ss_pred             EEEECCCEEecCCCc-CCCcCCCCcccEEEEEEEC
Confidence            899999999999999 9865543344556665544

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=95.48  E-value=0.081  Score=49.91  Aligned_cols=74  Identities=16%  Similarity=0.231  Sum_probs=52.7

Q ss_pred             EEEEEcCCcc--cCCccCCCCCeEEEEeeCEEEEEEEccCC--------------------eEEEEEECCCCEEEeCCCC
Q 045405          101 FRIDLDVGGI--NPPHTHPRGTEAGIVTRGTVLVGLVTTNN--------------------TFFSKVLTPGKVFLIPRAL  158 (240)
Q Consensus       101 ~~v~l~pGg~--~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g--------------------~~~~~~l~~GDv~v~P~G~  158 (240)
                      +.+.+.|+|.  .+|||-+. +-+++-++|+=+..+..+..                    ...+.+|++||++++|+|.
T Consensus       166 ~N~Y~tp~Gs~g~~pH~D~~-DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~  244 (489)
T 4diq_A          166 SNVYLTPPNSQGFAPHYDDI-EAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGF  244 (489)
T ss_dssp             EEEEEECSSBCCSCCBCCSS-EEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTC
T ss_pred             ceEEecCCCcccccCccCCc-ceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCC
Confidence            3466777664  57998754 56666777776777765431                    1246899999999999999


Q ss_pred             eEEEEecCCCCEEEEEE
Q 045405          159 VHFQLNVGNEPATFIPI  175 (240)
Q Consensus       159 ~H~~~N~G~~~a~~i~~  175 (240)
                      .|+..+.+++...-+.+
T Consensus       245 ~H~~~s~~~~~SlhlTi  261 (489)
T 4diq_A          245 IHQAECQDGVHSLHLTL  261 (489)
T ss_dssp             EEEEEBCSSCCEEEEEE
T ss_pred             ceEEEecCCCceEEEee
Confidence            99999987655444443

>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A

Probab=95.06  E-value=0.034  Score=49.07  Aligned_cols=71  Identities=18%  Similarity=0.176  Sum_probs=47.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccC--CeE-----EEEEECCCCEEEeCCCCeEEEEecCCCC
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN--NTF-----FSKVLTPGKVFLIPRALVHFQLNVGNEP  169 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~--g~~-----~~~~l~~GDv~v~P~G~~H~~~N~G~~~  169 (240)
                      .+..+|+.+.||+.+.||.=+  .|+....+|..++.+--..  +..     ..+.+++|+++++....+|+..|.|+++
T Consensus        90 ~l~~vRlrL~PG~~I~~HrD~--~~l~~~~~~~~RlHIPL~Tnp~~~f~vdg~~~~m~~GE~w~~d~~~~H~v~N~g~~~  167 (290)
T 1e5r_A           90 HLQMARSRNLKNAIVIPHRDF--VELDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEIS  167 (290)
T ss_dssp             SEEEEEEEEEESEEEEEECCC----------CBCCEEEECSCCTTEEEEETTEEECCCTTEEEECCTTSCEEEEESSSSC
T ss_pred             hhheEEEEeCCCCEeeCccCc--cccccccCCceEEEeeEecCCCcEEEECCEEEecCCCCEEEEcCCCeeEEEcCCCCC
Confidence            347788899999999888332  2655555777776654221  111     1578999999999999999999999765

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=94.70  E-value=0.14  Score=47.88  Aligned_cols=57  Identities=12%  Similarity=0.079  Sum_probs=44.4

Q ss_pred             cCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405          111 NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus       111 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      ...-++.+++|++++.+|++++.-  +-|+   ..+++||+++||+|+.+.+.=.+  +++.++
T Consensus       170 ~~~f~NaDGD~Livpq~G~l~i~T--EfG~---L~v~pgei~VIPRGi~frv~l~~--p~Rgyi  226 (471)
T 1eyb_A          170 NRCFYNSDGDFLIVPQKGNLLIYT--EFGK---MLVQPNEICVIQRGMRFSIDVFE--ETRGYI  226 (471)
T ss_dssp             SEEEEESSEEEEEEEEESCEEEEE--TTEE---EEECTTEEEEECTTCCEEEECSS--SEEEEE
T ss_pred             cceeecCCCCEEEEEEeCCEEEEE--eccc---EEeccCCEEEECCccEEEEeeCC--CceEEE
Confidence            344557788999999999998774  4465   57899999999999999886554  665544

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=94.64  E-value=0.092  Score=47.17  Aligned_cols=66  Identities=20%  Similarity=0.252  Sum_probs=49.4

Q ss_pred             EEEEcCC-cccCCccCCCCC-eEEEEeeCEEEEEEEccCC---------------------------------------e
Q 045405          102 RIDLDVG-GINPPHTHPRGT-EAGIVTRGTVLVGLVTTNN---------------------------------------T  140 (240)
Q Consensus       102 ~v~l~pG-g~~~pH~Hp~a~-Ei~yVl~G~~~v~~v~~~g---------------------------------------~  140 (240)
                      .+-+.+. ...+.|+++..+ -+..++.|+=++.+..+..                                       +
T Consensus       175 ~~~~G~~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~p~~~~  254 (336)
T 3k2o_A          175 WFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFK  254 (336)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSCGGGC
T ss_pred             EEEECCCCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCcchhhhcccccCc
Confidence            3455554 457789887643 5888999988877765421                                       1


Q ss_pred             EEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405          141 FFSKVLTPGKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus       141 ~~~~~l~~GDv~v~P~G~~H~~~N~G~  167 (240)
                      .+..++++||++++|+|..|+..|.++
T Consensus       255 ~~~~~l~pGd~l~iP~gw~H~v~~~~~  281 (336)
T 3k2o_A          255 PLEILQKPGETVFVPGGWWHVVLNLDT  281 (336)
T ss_dssp             CEEEEECTTCEEEECTTCEEEEEESSC
T ss_pred             eEEEEECCCCEEEeCCCCcEEEecCCC
Confidence            246789999999999999999999864

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=94.45  E-value=0.27  Score=42.91  Aligned_cols=66  Identities=18%  Similarity=0.163  Sum_probs=51.9

Q ss_pred             EEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCC--CCeEEEEecCCCCEEEE
Q 045405          104 DLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPR--ALVHFQLNVGNEPATFI  173 (240)
Q Consensus       104 ~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~--G~~H~~~N~G~~~a~~i  173 (240)
                      ...|+.-+++|-|.+-+-+.||++|++.-.  |+-|.  ..++++||+=..-+  |+.|.-.|..++++..+
T Consensus        45 ~~~~~~gf~~HPHrg~EtVTyvl~G~~~H~--DS~Gn--~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~l  112 (277)
T 2p17_A           45 DIFERGTFDVHPHRGIETVTYVISGELEHF--DSKAG--HSTLGPGDVQWMTAGRGVVHKEDPASGSTVHSL  112 (277)
T ss_dssp             EEECTTCCCCEEECSEEEEEEEEESCEEEE--ETTTE--EEEECTTCEEEEECTTCEEEEEEECTTCCEEEE
T ss_pred             CCCCCCCCCCCCCCCcEEEEEEEEeEEEEe--eCCCC--ceEECCCeEEEEeCCCCEEEEeecCCCCCEEEE
Confidence            667888899999976444779999998765  55566  67999999988766  56899999876776654

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=94.12  E-value=0.12  Score=48.35  Aligned_cols=78  Identities=18%  Similarity=0.138  Sum_probs=54.4

Q ss_pred             EEEcC-CcccCCccCCCCC-eEEEEeeCEEEEEEEccCC-------------------------eEEEEEECCCCEEEeC
Q 045405          103 IDLDV-GGINPPHTHPRGT-EAGIVTRGTVLVGLVTTNN-------------------------TFFSKVLTPGKVFLIP  155 (240)
Q Consensus       103 v~l~p-Gg~~~pH~Hp~a~-Ei~yVl~G~~~v~~v~~~g-------------------------~~~~~~l~~GDv~v~P  155 (240)
                      +-+.| |...+.|+.+..+ -+..++.|+=+..+..|..                         +.+..++++||+++||
T Consensus       200 ~~mGp~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~~~v~l~pGE~LfIP  279 (451)
T 2yu1_A          200 CLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVIP  279 (451)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCEEEEECTTCEEEEC
T ss_pred             EEEccCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccccceEEEECCCcEEEeC
Confidence            34555 4467889987654 5678999998888876531                         2346789999999999


Q ss_pred             CCCeEEEEecCCCCEEEEEEEeCCC
Q 045405          156 RALVHFQLNVGNEPATFIPIFNTQN  180 (240)
Q Consensus       156 ~G~~H~~~N~G~~~a~~i~~~~s~~  180 (240)
                      .|..|.+.|..+.-++-.-++++.|
T Consensus       280 sGWwH~V~nledsIait~NF~~~~n  304 (451)
T 2yu1_A          280 SGWIHAVYTPTDTLVFGGNFLHSFN  304 (451)
T ss_dssp             TTCEEEEECSSCEEEEEEEECCSSS
T ss_pred             CCceEEEecCCCeEEEeeeeCCccc
Confidence            9999999997543222223444443

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=93.73  E-value=0.094  Score=49.47  Aligned_cols=65  Identities=18%  Similarity=0.247  Sum_probs=50.1

Q ss_pred             EEEcC-CcccCCccCCCCC-eEEEEeeCEEEEEEEccCC-------------------------eEEEEEECCCCEEEeC
Q 045405          103 IDLDV-GGINPPHTHPRGT-EAGIVTRGTVLVGLVTTNN-------------------------TFFSKVLTPGKVFLIP  155 (240)
Q Consensus       103 v~l~p-Gg~~~pH~Hp~a~-Ei~yVl~G~~~v~~v~~~g-------------------------~~~~~~l~~GDv~v~P  155 (240)
                      +-+.| |...+.|+.+..+ -+..+++|+=++.+..|..                         +.+..++++||++++|
T Consensus       270 ~~mG~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~pGe~lfIP  349 (488)
T 3kv5_D          270 CLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVP  349 (488)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEETTCEEEEC
T ss_pred             EEEcCCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCCccchhhhcccccceEEEeeCCCCEEEeC
Confidence            44555 4567889987654 4668999999988886620                         2346799999999999


Q ss_pred             CCCeEEEEecCC
Q 045405          156 RALVHFQLNVGN  167 (240)
Q Consensus       156 ~G~~H~~~N~G~  167 (240)
                      .|..|++.|..+
T Consensus       350 sGWwH~V~nled  361 (488)
T 3kv5_D          350 TGWIHAVLTSQD  361 (488)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCceEEeeCCCC
Confidence            999999999743

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=93.61  E-value=0.27  Score=43.07  Aligned_cols=53  Identities=11%  Similarity=0.024  Sum_probs=41.3

Q ss_pred             EcCCccc-CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405          105 LDVGGIN-PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV  165 (240)
Q Consensus       105 l~pGg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~  165 (240)
                      +.+|... ..-   ..+-++++++|+..+.+   +++  ++.|++||.+.||++..|.+...
T Consensus       214 ~G~Ges~~~~~---~~d~wiWqLEGss~Vt~---~~q--~~~L~~~DsLLIpa~~~y~~~r~  267 (286)
T 2qnk_A          214 YGQGSSEGLRQ---NVDVWLWQLEGSSVVTM---GGR--RLSLAPDDSLLVLAGTSYAWERT  267 (286)
T ss_dssp             ECSEEEEECCC---SSCEEEEEEESCEEEEE---TTE--EEEECTTEEEEECTTCCEEEEEC
T ss_pred             EcCCccccccC---cCcEEEEEEcCceEEEE---CCe--EEeccCCCEEEecCCCeEEEEec
Confidence            6666542 222   22789999999998776   466  78999999999999999998764

>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}

Probab=93.48  E-value=0.46  Score=39.49  Aligned_cols=88  Identities=19%  Similarity=0.177  Sum_probs=56.7

Q ss_pred             cCCCCCCccce-EEEEEEEcCCcccCCccCCCCCeEEE----EeeC-EEEEEEEccCCeEEEEEECCCCEEEeCCCCeEE
Q 045405           88 FGFPAVNTQGV-ALFRIDLDVGGINPPHTHPRGTEAGI----VTRG-TVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHF  161 (240)
Q Consensus        88 ~~~P~l~~~gl-s~~~v~l~pGg~~~pH~Hp~a~Ei~y----Vl~G-~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~  161 (240)
                      +++|.+..... ++....|.||+.+.||..+....+-+    ++-. ...+.+   +|+  ....++|++++|.-...|.
T Consensus        91 ~~ip~~~~~~~~~a~fs~L~pG~~I~pH~g~~n~~lR~HL~L~~p~~~~~i~V---~~~--~~~w~eGe~~~fDds~~He  165 (197)
T 3rcq_A           91 EKFPETTGCRRGQIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKIRC---ANE--TKTWEEGKVLIFDDSFEHE  165 (197)
T ss_dssp             TTCHHHHTCTTCEEEEEEECTTEEEEEECCSCTTEEEEEEEEECCSSSEEEEE---TTE--EECCCBTCEEEECTTSCEE
T ss_pred             HhCcccccCCcceEEEEEeCCCCCcCCeeCCCCCeEEEEEEEEeCCCCcEEEE---CCE--EEEeeCCcEEEEcCCeEEE
Confidence            45554432111 57778999999999999876444322    1111 222222   133  5788999999999999999


Q ss_pred             EEecCCCCEEEEEEEeCCCC
Q 045405          162 QLNVGNEPATFIPIFNTQNP  181 (240)
Q Consensus       162 ~~N~G~~~a~~i~~~~s~~P  181 (240)
                      ..|.++++-+ +-+++-..|
T Consensus       166 v~N~~d~~Rv-vL~~D~~rP  184 (197)
T 3rcq_A          166 VWQDASSFRL-IFIVDVWHP  184 (197)
T ss_dssp             EEECSSSCEE-EEEEEEECT
T ss_pred             EEECCCCCEE-EEEEeeeCC
Confidence            9999887644 334554444

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=93.37  E-value=0.2  Score=46.70  Aligned_cols=65  Identities=20%  Similarity=0.249  Sum_probs=49.4

Q ss_pred             EEEcC-CcccCCccCCCCC-eEEEEeeCEEEEEEEccCC-------------------------eEEEEEECCCCEEEeC
Q 045405          103 IDLDV-GGINPPHTHPRGT-EAGIVTRGTVLVGLVTTNN-------------------------TFFSKVLTPGKVFLIP  155 (240)
Q Consensus       103 v~l~p-Gg~~~pH~Hp~a~-Ei~yVl~G~~~v~~v~~~g-------------------------~~~~~~l~~GDv~v~P  155 (240)
                      +-+.| |+....|.-+..+ -+..+++|+=+..+..|..                         +.+..++++||++++|
T Consensus       235 ~~mG~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~~~~~~~~~~~~~~~~~v~l~pGetlfIP  314 (447)
T 3kv4_A          235 CLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIP  314 (447)
T ss_dssp             EEEECTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEETTCEEEEC
T ss_pred             EEEeCCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccCcchhhhhccccccceEEEEECCCcEEecC
Confidence            44444 4567889887654 4668999999888876531                         2246799999999999


Q ss_pred             CCCeEEEEecCC
Q 045405          156 RALVHFQLNVGN  167 (240)
Q Consensus       156 ~G~~H~~~N~G~  167 (240)
                      .|..|+..|..+
T Consensus       315 sGWwH~V~nled  326 (447)
T 3kv4_A          315 TGWIHAVLTPVD  326 (447)
T ss_dssp             TTCEEEEEESSC
T ss_pred             CCCeEEEecCCC
Confidence            999999999854

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=93.20  E-value=0.63  Score=40.85  Aligned_cols=70  Identities=16%  Similarity=0.217  Sum_probs=52.8

Q ss_pred             EEEEEEcCCcccCCccCCCCCeEEEEe-eCEEEEEEEccCCeEEEEEECCCCEEEeCC--CCeEEEEecCCCCEEEE
Q 045405          100 LFRIDLDVGGINPPHTHPRGTEAGIVT-RGTVLVGLVTTNNTFFSKVLTPGKVFLIPR--ALVHFQLNVGNEPATFI  173 (240)
Q Consensus       100 ~~~v~l~pGg~~~pH~Hp~a~Ei~yVl-~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~--G~~H~~~N~G~~~a~~i  173 (240)
                      +....+.|+.-+++|-|.+-+-+.||+ +|++...  |+-|.  ..++++||+=..-+  |+.|.-.|..++++..+
T Consensus        42 ld~~~~~~~~Gf~~HPHrg~EtVTyvl~~G~~~H~--DS~Gn--~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~l  114 (290)
T 1j1l_A           42 FDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHE--DFCGH--TGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGL  114 (290)
T ss_dssp             EEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEE--ETTSC--EEEECTTCEEEEECTTCEEEEEEECSSSCEEEE
T ss_pred             EEccccCCCCCCCCCCCCCeEEEEEECcceEEEEe--eCCCC--ceEECCCcEEEEeCCCCEEEEeEcCCCCCEEEE
Confidence            445567888778999996644477999 9998765  55565  57899999987765  56899999766676655

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=92.90  E-value=0.16  Score=46.60  Aligned_cols=64  Identities=19%  Similarity=0.240  Sum_probs=49.7

Q ss_pred             EEEcC-CcccCCccCCCCC-eEEEEeeCEEEEEEEccCC-------------------------eEEEEEECCCCEEEeC
Q 045405          103 IDLDV-GGINPPHTHPRGT-EAGIVTRGTVLVGLVTTNN-------------------------TFFSKVLTPGKVFLIP  155 (240)
Q Consensus       103 v~l~p-Gg~~~pH~Hp~a~-Ei~yVl~G~~~v~~v~~~g-------------------------~~~~~~l~~GDv~v~P  155 (240)
                      +-+.| |...+.|+.+..+ -+..+++|+=+..+..|..                         +.+...+++||++++|
T Consensus       179 l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~~~~e~~~~~~~~~~~~v~l~pGe~lfIP  258 (397)
T 3kv9_A          179 CLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVP  258 (397)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSGGGGGSCGGGGSSCCEEEEEETTCEEEEC
T ss_pred             EEEcCCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCCCcchhhhccccCceEEEEECCCCEEEeC
Confidence            45555 4567889998765 3568999998888886531                         2346789999999999


Q ss_pred             CCCeEEEEecC
Q 045405          156 RALVHFQLNVG  166 (240)
Q Consensus       156 ~G~~H~~~N~G  166 (240)
                      .|..|+..|..
T Consensus       259 sGW~H~V~nle  269 (397)
T 3kv9_A          259 TGWIHAVLTSQ  269 (397)
T ss_dssp             TTCEEEEEEEE
T ss_pred             CCCeEEccCCc
Confidence            99999999974

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=92.79  E-value=0.18  Score=46.02  Aligned_cols=65  Identities=20%  Similarity=0.260  Sum_probs=49.6

Q ss_pred             EEEcC-CcccCCccCCCCCe-EEEEeeCEEEEEEEccCC-------------------------eEEEEEECCCCEEEeC
Q 045405          103 IDLDV-GGINPPHTHPRGTE-AGIVTRGTVLVGLVTTNN-------------------------TFFSKVLTPGKVFLIP  155 (240)
Q Consensus       103 v~l~p-Gg~~~pH~Hp~a~E-i~yVl~G~~~v~~v~~~g-------------------------~~~~~~l~~GDv~v~P  155 (240)
                      +-+.| |+..+.|..+..+- +..+++|+=+..+..|..                         +.+..++++||++++|
T Consensus       151 l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtLfIP  230 (371)
T 3k3o_A          151 CLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIP  230 (371)
T ss_dssp             EEEECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSTTGGGSCGGGTSSCCEEEEEETTCEEEEC
T ss_pred             EEEcCCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCCccchhhcccccCceEEEEECCCcEEEeC
Confidence            44444 55688899877654 568999998888875431                         2356799999999999


Q ss_pred             CCCeEEEEecCC
Q 045405          156 RALVHFQLNVGN  167 (240)
Q Consensus       156 ~G~~H~~~N~G~  167 (240)
                      .|..|+..|..+
T Consensus       231 sGWwH~V~nled  242 (371)
T 3k3o_A          231 TGWIHAVLTPVD  242 (371)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCCeEEEecCCC
Confidence            999999999743

>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A

Probab=92.40  E-value=1.2  Score=38.93  Aligned_cols=81  Identities=22%  Similarity=0.250  Sum_probs=53.5

Q ss_pred             ceEEEEEEEcCCcc---cCCccCCCCCeEEEEee----CEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCC
Q 045405           97 GVALFRIDLDVGGI---NPPHTHPRGTEAGIVTR----GTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEP  169 (240)
Q Consensus        97 gls~~~v~l~pGg~---~~pH~Hp~a~Ei~yVl~----G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~  169 (240)
                      .+-+..-.+.|||.   .|||.|.+..|.+|-.+    |.+. +++.+.++.....++-||++++|...+|.  ..|.+.
T Consensus       179 qllmg~evltpgg~WSSyPpHkHDrr~EeyyYF~l~~~gfv~-q~~g~p~Etrhi~V~n~daVlvP~wh~h~--~~G~~~  255 (282)
T 1xru_A          179 QLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACVF-HMMGQPQETRHIVMHNEQAVISPSWSIHS--GVGTKA  255 (282)
T ss_dssp             SCEEEEEEECTTCCEESCSEEECTTEEEEEEEESCCTTCCEE-EEEEETTEEEEEEECSSEEEEECTTCEEE--EEESSC
T ss_pred             hEEEEEEEEeCCCCcCCCCCccCCCCceEEEEEEeCCCCEEE-EEeCCCCCeeEEEEECCCEEEeCCCCCCC--CCCccc
Confidence            46677778888873   69999987777777655    4433 33333344445678999999999656666  446666


Q ss_pred             EEEEEEEeCCC
Q 045405          170 ATFIPIFNTQN  180 (240)
Q Consensus       170 a~~i~~~~s~~  180 (240)
                      -.+|.+.-.+|
T Consensus       256 Y~ylwvMAG~n  266 (282)
T 1xru_A          256 YTFIWGMVGEN  266 (282)
T ss_dssp             CEEEEEEEESC
T ss_pred             eEEEEEEEcCC
Confidence            55555554444

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=91.07  E-value=1.4  Score=38.63  Aligned_cols=81  Identities=21%  Similarity=0.234  Sum_probs=44.0

Q ss_pred             ceEEEEEEEcCCcc---cCCccCCCCCeEEEEee----CEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCC
Q 045405           97 GVALFRIDLDVGGI---NPPHTHPRGTEAGIVTR----GTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEP  169 (240)
Q Consensus        97 gls~~~v~l~pGg~---~~pH~Hp~a~Ei~yVl~----G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~  169 (240)
                      .+-+..-.+.|||.   .|||.|.+..|..|-.+    |.+. ++..+-++.....++-||++++|+|-.|-  ..|...
T Consensus       179 qllmg~evltpGg~WSSyPpHkHDrr~E~yyYF~l~p~~~v~-h~~g~pdEtrh~~V~n~daVlvP~wgyHp--~~Gt~~  255 (289)
T 1ywk_A          179 QLQMGYTILEPGSAWNTMPCHTHERRMEAYVYFDMEEDTRIF-HMMGKPDETKHLVMSNEQAAISPSWSIHS--GVGTSN  255 (289)
T ss_dssp             SCEEEEEEECTTCCCCC--------CEEEEEEESCCTTCCEE-EEESSTTSCEEEEECTTEEEEECTTSCCC--EEESSC
T ss_pred             eEEEEEEEEeCCCCcCCCCCccCCCCCeeEEEEEeCCCCeEE-EECCCCCceEEEEEECCCEEEeCCCcccC--CCCCcC
Confidence            46677778888873   69999987778776544    3322 22222233335678999999999988885  234444


Q ss_pred             EEEEEEEeCCC
Q 045405          170 ATFIPIFNTQN  180 (240)
Q Consensus       170 a~~i~~~~s~~  180 (240)
                      -.+|.+.-.+|
T Consensus       256 Y~ylwvMAG~n  266 (289)
T 1ywk_A          256 YSFIWAMCGEN  266 (289)
T ss_dssp             CEEEEEEECC-
T ss_pred             eEEEEEEEcCC
Confidence            44555554433

>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 2.35A {Leishmania major}

Probab=90.72  E-value=3.6  Score=34.78  Aligned_cols=132  Identities=8%  Similarity=0.050  Sum_probs=81.6

Q ss_pred             CcCCceEEEecccCC------CCCCccceEEEEEEEcCCcccCCccC-CCCCeEEEEeeCE-EEEEEEccCC--------
Q 045405           76 DVFKRAVTFGDVFGF------PAVNTQGVALFRIDLDVGGINPPHTH-PRGTEAGIVTRGT-VLVGLVTTNN--------  139 (240)
Q Consensus        76 ~~~G~~v~~~~~~~~------P~l~~~gls~~~v~l~pGg~~~pH~H-p~a~Ei~yVl~G~-~~v~~v~~~g--------  139 (240)
                      .+.||+.++......      .+-+ ...+....-|.+|..  -||| -++.|+.+...|. +++.+++++|        
T Consensus        33 HPEGG~yrEt~Rs~~~v~~~~~~~R-~~~TaIYfLL~~g~~--S~~HRv~sdEiW~~h~G~pL~l~li~~dG~~~~~~~~  109 (225)
T 3m3i_A           33 HPEGGYYSEVVRSAHKVDNEEGNRR-HAYTTIYFLCTPESP--SHLHRLCSDETWMYHAGDPLQLHVILKDPQDEDRIAA  109 (225)
T ss_dssp             CTTSSEEEEEEECSSEEECTTSCEE-ESCEEEEEEECSSSC--EEEEECSSEEEEEEEEESCEEEEEEESSSTTTTC---
T ss_pred             CCCCceEEEEEECCCcccCCCCCCc-ccceeEEEEecCCCC--cccEEecCCEEEEEECCCCEEEEEEcCCCcccccccc
Confidence            467777776654433      1212 124555667788875  4666 4789999999998 5788888777        


Q ss_pred             --------------------eEEEEEE----CCCC--EEEeCCCCeEEEEecCCC-----CEEEEEEEeCCCCCceeccc
Q 045405          140 --------------------TFFSKVL----TPGK--VFLIPRALVHFQLNVGNE-----PATFIPIFNTQNPGVSDSIG  188 (240)
Q Consensus       140 --------------------~~~~~~l----~~GD--v~v~P~G~~H~~~N~G~~-----~a~~i~~~~s~~Pg~~~~~~  188 (240)
                                          +..+.+|    .+|+  -++||+|......-.+++     ...+++..  -.||+..-..
T Consensus       110 ~~~~~P~~~~~~~~~~~~~~~~~~~~LG~d~~~Ge~pQ~vVP~G~WqaA~~~~~~~~~~~~~sLVsCt--VaPGFdF~DF  187 (225)
T 3m3i_A          110 QPPAAPQAETDTADARPKYQVYRRVLVGARVERGELLQYTVPGGAIFGSSVAADGADGQAGYSLVSCI--VSPGFDYRDF  187 (225)
T ss_dssp             ---------------CCSSCEEEEEEESSCGGGTCBSEEEECTTCEEEEECCSSSTTCSSSCEEEEEE--EESCCCGGGC
T ss_pred             cccccccccccccccccccCceEEEEeCCCccCCceeEEEeCCCEEEEEEECCCCcCcCCCeEEEEEE--EcCCccchhc
Confidence                                4445555    4466  568999987666655532     34444322  3477655322


Q ss_pred             hhhcCCCCCCHHHHHhhcCCCHHHHHHHHh
Q 045405          189 TLFDTTPPVPNEVLTKSFRVGDDVINTIRA  218 (240)
Q Consensus       189 ~lf~s~~~~p~~vla~af~v~~~~v~~l~~  218 (240)
                         .   -++.+-|.+.|---++.|++|-.
T Consensus       188 ---e---l~~~~~L~~~~P~~~~~I~~lt~  211 (225)
T 3m3i_A          188 ---E---IFTQAQLMELYPQHEAVIKQMAY  211 (225)
T ss_dssp             ---E---ECBHHHHHHHCGGGHHHHHHHSB
T ss_pred             ---E---ecCHHHHHHHCchHHHHHHHhch
Confidence               2   24566667677767777887754

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=90.71  E-value=0.41  Score=43.89  Aligned_cols=65  Identities=15%  Similarity=0.198  Sum_probs=49.2

Q ss_pred             EEEcC-CcccCCccCCCCC-eEEEEeeCEEEEEEEccCC-------------------------eEEEEEECCCCEEEeC
Q 045405          103 IDLDV-GGINPPHTHPRGT-EAGIVTRGTVLVGLVTTNN-------------------------TFFSKVLTPGKVFLIP  155 (240)
Q Consensus       103 v~l~p-Gg~~~pH~Hp~a~-Ei~yVl~G~~~v~~v~~~g-------------------------~~~~~~l~~GDv~v~P  155 (240)
                      +-+.| |+....|.-+..+ -+..+++|+=+..+..|..                         +-+..++++||++++|
T Consensus       178 ~~mGp~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtlfIP  257 (392)
T 3pua_A          178 CLICVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIP  257 (392)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSTTGGGSCGGGGSSCCEEEEEETTCEEEEC
T ss_pred             EEEeCCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCcchhhhhhcccccceEEEEECCCcEEeeC
Confidence            44444 5567889887654 5678999998888875531                         2246799999999999


Q ss_pred             CCCeEEEEecCC
Q 045405          156 RALVHFQLNVGN  167 (240)
Q Consensus       156 ~G~~H~~~N~G~  167 (240)
                      .|..|+..|..+
T Consensus       258 sGWwH~V~nled  269 (392)
T 3pua_A          258 SGWIYATLTPVD  269 (392)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCceEEEecCCC
Confidence            999999999743

>3loi_A Putative uncharacterized protein; beta barrel, unknown function; 2.10A {Branchiostoma belcheri tsingtauense} SCOP: b.82.1.0 PDB: 3lzz_A*

Probab=90.40  E-value=6.2  Score=31.96  Aligned_cols=128  Identities=14%  Similarity=0.137  Sum_probs=79.9

Q ss_pred             CcC-CceEEEecccC-------CCCCCccceEEEEEEEcCCcccCCccC-CCCCeEEEEeeCE-EEEEEEccCCeEEEEE
Q 045405           76 DVF-KRAVTFGDVFG-------FPAVNTQGVALFRIDLDVGGINPPHTH-PRGTEAGIVTRGT-VLVGLVTTNNTFFSKV  145 (240)
Q Consensus        76 ~~~-G~~v~~~~~~~-------~P~l~~~gls~~~v~l~pGg~~~pH~H-p~a~Ei~yVl~G~-~~v~~v~~~g~~~~~~  145 (240)
                      .+. ||+.++.....       ..+-+ ...+....-|.+|...  ||| -+++|+.+-..|. +++.+++++|+..+.+
T Consensus        24 HPEEGG~yrEt~rs~~~v~~~~~~~~R-~~~TaIYfLL~~~~~S--~~HRv~sdEiW~~~~G~pL~l~~~~~dG~~~~~~  100 (172)
T 3loi_A           24 HPASGGWFRETYRSDVQVEAEGFDGKR-SVLTMIYYLMQAGQPD--PFHRVKSDETFVHNLGGSMKIHMIHPDGSYSCSI  100 (172)
T ss_dssp             CTTSSSEEEEEEECSCEECCTTSSSCE-ESCEEEEEEEETTCCE--EEEECSSEEEEEEEEESCEEEEEECTTSCEEEEE
T ss_pred             CCcCCCeEEEEEECcCcccCCCCCCCc-ccceEEEEEEcCCCCc--cCEEecCCEEEEEEcCCCEEEEEEcCCCceEEEE
Confidence            455 77666655432       12222 1245666777888754  555 3689999999996 6899999988766665


Q ss_pred             E----CCCC---EEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 045405          146 L----TPGK---VFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIR  217 (240)
Q Consensus       146 l----~~GD---v~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~~~lf~s~~~~p~~vla~af~v~~~~v~~l~  217 (240)
                      |    .+|+   -++||+|.......   ....+++.  .-.||+..-.   |.   -.+++-|.+.|---++.|++|-
T Consensus       101 LG~d~~~Ge~~pQ~vVP~G~WqaA~~---~~~~LVsc--tVaPGF~f~d---fe---l~~~~~L~~~~P~~~~~I~~lt  168 (172)
T 3loi_A          101 LGNPLEHPEARHQVVVPRRVWFAQEV---DGYCLASV--LVAPGFDFKD---FS---LGKREELIKEYPQHRDVIMRCT  168 (172)
T ss_dssp             ESCTTTSTTCBSEEEECTTCEEEEEE---SSEEEEEE--EEESCCCGGG---CE---ECCHHHHHHHCGGGHHHHHHTS
T ss_pred             eCCCcccCCcceEEEECCCEEEEEEe---CCcEEEEE--EEcCCccchh---cE---EcCHHHHHHHCchHHHHHHHhc
Confidence            5    4678   67999998766655   33444432  2347765432   22   2456666666765666666653

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=89.61  E-value=1.2  Score=35.56  Aligned_cols=127  Identities=11%  Similarity=0.073  Sum_probs=79.2

Q ss_pred             EEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe-EEEEEECCCCEEEeC-----CC--CeEEEEecCCCCEEE
Q 045405          101 FRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT-FFSKVLTPGKVFLIP-----RA--LVHFQLNVGNEPATF  172 (240)
Q Consensus       101 ~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~-~~~~~l~~GDv~v~P-----~G--~~H~~~N~G~~~a~~  172 (240)
                      ....+++|..+-.. ......+++|++|.+++...+++|+ .....+.+||++.+.     .+  ..+.....  ++.++
T Consensus        27 ~~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~a~--~~~~~  103 (220)
T 3dv8_A           27 ITQHVKKGTIIHNG-NMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAE--KDTDL  103 (220)
T ss_dssp             EEEEECTTCEEEEG-GGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGGGGCTTCCCCCEEEES--SCEEE
T ss_pred             ceEEeCCCCEEECC-CCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHHHHhCCCCCceEEEEe--eeeEE
Confidence            45678888764322 2235789999999999999888775 334678999996321     12  22333333  45555


Q ss_pred             EEEEe-------CCCCCcee----------------------------ccc------hhhcC-CCCCCHHHHHhhcCCCH
Q 045405          173 IPIFN-------TQNPGVSD----------------------------SIG------TLFDT-TPPVPNEVLTKSFRVGD  210 (240)
Q Consensus       173 i~~~~-------s~~Pg~~~----------------------------~~~------~lf~s-~~~~p~~vla~af~v~~  210 (240)
                      +.+-.       ..+|....                            +..      ...+. .-.++.+-+|...|+++
T Consensus       104 ~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr  183 (220)
T 3dv8_A          104 WIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHR  183 (220)
T ss_dssp             EEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCH
T ss_pred             EEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCH
Confidence            43321       12442110                            000      01110 01588999999999999


Q ss_pred             HHHHHHHhhcCCCceEEecC
Q 045405          211 DVINTIRAARAQSSWINILD  230 (240)
Q Consensus       211 ~~v~~l~~~~~~~~~i~~~~  230 (240)
                      +++.++.+.....+.|...+
T Consensus       184 ~tvsR~l~~L~~~g~I~~~~  203 (220)
T 3dv8_A          184 EVITRMLRYFQVEGLVKLSR  203 (220)
T ss_dssp             HHHHHHHHHHHHTTSEEEET
T ss_pred             HHHHHHHHHHHHCCCEEeCC
Confidence            99999999888888887654

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A

Probab=89.41  E-value=1  Score=37.55  Aligned_cols=75  Identities=25%  Similarity=0.280  Sum_probs=45.7

Q ss_pred             EEEEEEcCCcccCCccCCCCC--eEEEEee--CEEEEEEEccC------------------CeEEEEEECCCCEEEeCCC
Q 045405          100 LFRIDLDVGGINPPHTHPRGT--EAGIVTR--GTVLVGLVTTN------------------NTFFSKVLTPGKVFLIPRA  157 (240)
Q Consensus       100 ~~~v~l~pGg~~~pH~Hp~a~--Ei~yVl~--G~~~v~~v~~~------------------g~~~~~~l~~GDv~v~P~G  157 (240)
                      .-...+++|+...+|.|+++.  -++|+-.  +.+.+.+.++.                  .......-++||+++||.-
T Consensus       105 ~W~~~~~~G~~~~~H~H~~~~lSgV~Yl~~p~~~G~L~f~~p~~~~~~~~~~~~~~~~~~~~~~~~i~P~~G~lvlFpS~  184 (216)
T 2rg4_A          105 IWINILPEGGVHGSHIHPHSVISGTTYVAMPEGTSALKLEDPRLPFMMAAPTRRKGAREELRTFRSVAPKVGDVLLWESW  184 (216)
T ss_dssp             EEEEEECTTCCEEEECCTTCSEEEEEEEECCSCSCCEEEECTTGGGCSSSCCCCCCSCGGGCSEEEECCCTTEEEEEETT
T ss_pred             EEEEEcCCCCcccCccCCCCeEEEEEEEECCCCCccEEEeCCccccccccCcccccCcccCCCeeEecCCCCeEEEECCC
Confidence            445677899999999998642  1223322  22334444442                  1112446699999999999


Q ss_pred             CeEEEEe-cCCCCEEEEE
Q 045405          158 LVHFQLN-VGNEPATFIP  174 (240)
Q Consensus       158 ~~H~~~N-~G~~~a~~i~  174 (240)
                      +.|...- .++++-+-|+
T Consensus       185 l~H~V~p~~~~~~RiSIs  202 (216)
T 2rg4_A          185 LRHEVPMNMAEEDRISVS  202 (216)
T ss_dssp             SCEEECCCCSSSCEEEEE
T ss_pred             CEEeccCCCCCCCEEEEE
Confidence            9999864 3444444443

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=88.82  E-value=1.4  Score=32.34  Aligned_cols=56  Identities=14%  Similarity=0.023  Sum_probs=41.8

Q ss_pred             EEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405          104 DLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV  165 (240)
Q Consensus       104 ~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~  165 (240)
                      .+.||-   .+....+.|+.-|++|++++.+-   |...++.+++||.|.+|++.-.-++-.
T Consensus        29 Vm~pGe---ytF~T~~~E~M~vvsG~~~V~lp---g~~ew~~~~aGesF~Vpans~F~l~v~   84 (94)
T 2oyz_A           29 VMLPGE---YTFGTQAPERMTVVKGALVVKRV---GEADWTTYSSGESFDVEGNSSFELQVK   84 (94)
T ss_dssp             EECSEE---EEEEESSCEEEEEEESEEEEEET---TCSSCEEEETTCEEEECSSEEEEEEES
T ss_pred             EEeceE---EEEcCCCeEEEEEEEeEEEEEcC---CCCcCEEECCCCEEEECCCCEEEEEEc
Confidence            455654   23344579999999999999884   322278999999999999987766653

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=88.66  E-value=0.53  Score=44.71  Aligned_cols=64  Identities=17%  Similarity=0.214  Sum_probs=47.8

Q ss_pred             EEEcC-CcccCCccCCCCC-eEEEEeeCEEEEEEEccC-------------------------CeEEEEEECCCCEEEeC
Q 045405          103 IDLDV-GGINPPHTHPRGT-EAGIVTRGTVLVGLVTTN-------------------------NTFFSKVLTPGKVFLIP  155 (240)
Q Consensus       103 v~l~p-Gg~~~pH~Hp~a~-Ei~yVl~G~~~v~~v~~~-------------------------g~~~~~~l~~GDv~v~P  155 (240)
                      +-+.| |+...+|.-+..+ -+..|++|+=+..+..|.                         ++.+..++++||++++|
T Consensus       300 ~lmg~~gS~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~nl~~y~~w~~s~~~~~wfgd~l~~~~~~v~l~pGEtlfIP  379 (528)
T 3pur_A          300 CLAGMAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIP  379 (528)
T ss_dssp             EEEECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSSCCSCCGGGGTTTCCEEEEEETTCEEEEC
T ss_pred             EEEeCCCCCCCeeECCCCCceeEEEecceEEEEEeCCCccchhhhhhhccCCchhhhhcccccccEEEEEECCCCEEEec
Confidence            33444 4467788876654 567899999888887653                         11235789999999999


Q ss_pred             CCCeEEEEecC
Q 045405          156 RALVHFQLNVG  166 (240)
Q Consensus       156 ~G~~H~~~N~G  166 (240)
                      .|..|+..|..
T Consensus       380 sGW~HaV~tle  390 (528)
T 3pur_A          380 AGWIHAVLTPV  390 (528)
T ss_dssp             TTCEEEEEEEE
T ss_pred             CCceEEEecCC
Confidence            99999999974

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=88.06  E-value=2  Score=38.02  Aligned_cols=59  Identities=15%  Similarity=0.287  Sum_probs=42.8

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQL  163 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~  163 (240)
                      -+++.++++.++...   .......+++|++|++++..   +++  ...+++||.+++|++...+..
T Consensus       250 ~F~~~~~~~~~~~~~---~~~~~~~il~v~~G~~~l~~---~~~--~~~l~~G~~~~vpa~~~~~~i  308 (319)
T 1qwr_A          250 YFSVYKWDINGEAEM---AQDESFLICSVIEGSGLLKY---EDK--TCPLKKGDHFILPAQMPDFTI  308 (319)
T ss_dssp             SCEEEEEEEEEEEEE---CCCSSCEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCCCEEE
T ss_pred             EEEEEEEEECCceEE---ccCCccEEEEEEcCeEEEEE---CCE--EEEEcCCcEEEEeCCCceEEE
Confidence            467778888754322   22356899999999998865   355  568999999999998754443

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=87.43  E-value=2  Score=32.40  Aligned_cols=66  Identities=14%  Similarity=0.109  Sum_probs=47.0

Q ss_pred             EEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405          104 DLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus       104 ~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      .+.||- .|-+....+.|+.-|++|++++.+-++   ..++.+++|+.|.+|++.-.-++-.  ++...++.
T Consensus        43 Vm~PGe-~~YtF~T~~~E~MevvsG~l~V~Lpg~---~eW~~~~aGesF~VpanssF~lkv~--~~~~Y~C~  108 (111)
T 3hqx_A           43 VILPTE-QPLTFETHVPERMEIISGECRVKIADS---TESELFRAGQSFYVPGNSLFKIETD--EVLDYVCH  108 (111)
T ss_dssp             EECCCS-SCEEEECSSCEEEEEEESEEEEEETTC---SSCEEEETTCEEEECTTCEEEEECS--SCEEEEEE
T ss_pred             EEeccc-cceEEcCCCcEEEEEEEeEEEEEcCCc---ccCEEeCCCCEEEECCCCcEEEEEC--cceeEEEE
Confidence            456652 224555668999999999999998432   2378999999999999988776653  44444443

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13

Probab=86.94  E-value=4  Score=31.13  Aligned_cols=55  Identities=18%  Similarity=0.140  Sum_probs=39.7

Q ss_pred             eEEEEeeCEEEEEEEccCCe---EEEEEECCCCEEEeCCCCeEEEEecCCCCEEE-EEEEe
Q 045405          121 EAGIVTRGTVLVGLVTTNNT---FFSKVLTPGKVFLIPRALVHFQLNVGNEPATF-IPIFN  177 (240)
Q Consensus       121 Ei~yVl~G~~~v~~v~~~g~---~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~-i~~~~  177 (240)
                      ..+-|++|+++....+.++.   .....+.+|+..++|+...|.+.-.  +++.+ |.++.
T Consensus        40 gkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~i~Pq~wHrVe~s--dD~~f~leFyc   98 (119)
T 3dl3_A           40 GQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELS--DDAQFNINFWS   98 (119)
T ss_dssp             EEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEEC--TTCEEEEEEEE
T ss_pred             EEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCceeCCCceEEEEEC--CCeEEEEEEEE
Confidence            45689999999987664442   1345789999999999999999943  33444 44443

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=86.90  E-value=2.9  Score=38.75  Aligned_cols=76  Identities=16%  Similarity=0.184  Sum_probs=47.7

Q ss_pred             ceEEEEEEEc--CCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEE-EEECCCCEEEeCCCCeEEEEec---CCCCE
Q 045405           97 GVALFRIDLD--VGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFS-KVLTPGKVFLIPRALVHFQLNV---GNEPA  170 (240)
Q Consensus        97 gls~~~v~l~--pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~-~~l~~GDv~v~P~G~~H~~~N~---G~~~a  170 (240)
                      .+++.++++.  +++....-.+ ....+++|++|++++...  +++. . ..|++||++++|++..-.+.+.   +.+.+
T Consensus       356 eF~v~~~~~~~~~~~~~~~~~~-~~~~illv~~G~g~i~~~--~~~~-~~~~l~~G~~~fvpa~~~~~i~g~~~~~~~~~  431 (440)
T 1pmi_A          356 EFSVLQTIFDKSKGGKQVIEGL-NGPSIVIATNGKGTIQIT--GDDS-TKQKIDTGYVFFVAPGSSIELTADSANQDQDF  431 (440)
T ss_dssp             SCEEEEEECCTTTCCEEEECCC-SSCEEEEEEESEEEEEET--TCGG-GCEEEETTCEEEECTTCCEEEEECSSCCSSCC
T ss_pred             eEEEEEEEecCCCCceeEEecC-CCcEEEEEEeCeEEEEeC--Cccc-ceEEeccCCEEEEeCCCcEEEEEecccCCCcE
Confidence            4788888887  4422111112 458999999999998752  2210 1 4899999999999944334444   13445


Q ss_pred             EEEEEE
Q 045405          171 TFIPIF  176 (240)
Q Consensus       171 ~~i~~~  176 (240)
                      .++.++
T Consensus       432 ~~~~a~  437 (440)
T 1pmi_A          432 TTYRAF  437 (440)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555443

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=86.85  E-value=2.1  Score=36.45  Aligned_cols=69  Identities=12%  Similarity=0.031  Sum_probs=47.7

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      ..+.+..+.|+||+....-..++..-++||++|++.+.     |+    .+++||.+++..+..-.+.+  .+++.++.+
T Consensus       158 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~v~~G~v~v~-----g~----~l~~gd~~~~~~~~~l~l~a--~~~a~~Ll~  226 (242)
T 1tq5_A          158 QDMELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTIN-----GV----KASTSDGLAIWDEQAISIHA--DSDSEVLLF  226 (242)
T ss_dssp             SSCEEEEEEECTTCEEEECCCTTCEEEEEEEESEEEET-----TE----EEETTCEEEEESCSCEEEEE--SSSEEEEEE
T ss_pred             CCCEEEEEEECCCCEEEeecCCCcEEEEEEccCcEEEC-----CE----EeCCCCEEEECCCCeEEEEe--CCCCEEEEE
Confidence            36788899999998653333344467899999998762     43    68999999998765444544  245665543

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=86.44  E-value=1.2  Score=40.64  Aligned_cols=58  Identities=16%  Similarity=0.167  Sum_probs=42.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQ  162 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~  162 (240)
                      .+++.++++.++...  ..+ +...+++|++|++++..   +++  +..+++||.+++|++..-+.
T Consensus       323 ~F~v~~~~l~~~~~~--~~~-~~~~il~v~~G~~~l~~---~~~--~~~l~~G~~~fvpa~~~~~~  380 (394)
T 2wfp_A          323 DFAFSLHDLALQETS--IGQ-HSAAILFCVEGEAVLRK---DEQ--RLVLKPGESAFIGADESPVN  380 (394)
T ss_dssp             SCEEEEEECCSSCEE--ECC-SSCEEEEEEEEEEEEEE---TTE--EEEECTTCEEEECGGGCCEE
T ss_pred             EEEEEEEEEcCCeEE--ecC-CCcEEEEEEeceEEEEE---CCe--EEEEccCcEEEEeCCCceEE
Confidence            577888888755321  233 45799999999998764   244  56899999999999864443

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=86.33  E-value=7.6  Score=33.84  Aligned_cols=76  Identities=14%  Similarity=0.140  Sum_probs=49.3

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      ..+.+..+.|++|+.......+...-++||++|++.+.  +. ..  ...+.++.++++..|..-.+.+.+++++.++.+
T Consensus       167 ~~~~~~~~~l~~g~~~~~~l~~~~~~~lyv~~G~v~v~--g~-~~--~~~~~~~~~~~l~~gd~~~i~~~a~~~a~~LLl  241 (290)
T 1j1l_A          167 TPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIG--PD-DA--QQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLI  241 (290)
T ss_dssp             SCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEES--CT-TS--CEEECTTEEEEECSCSEEEEECCSSSCEEEEEE
T ss_pred             CCcEEEEEEECCCCEEEeecCCCCEEEEEEEeCeEEEC--Cc-cc--ceeccCceEEEecCCCEEEEEEcCCCCcEEEEE
Confidence            46888899999998653333334468899999999763  11 10  135667777777777655555544567776643


Q ss_pred             E
Q 045405          176 F  176 (240)
Q Consensus       176 ~  176 (240)
                      -
T Consensus       242 ~  242 (290)
T 1j1l_A          242 A  242 (290)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=85.73  E-value=3.7  Score=35.19  Aligned_cols=71  Identities=21%  Similarity=0.103  Sum_probs=47.4

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      ..+.+..+.|+||+....-..++. -++||++|++.+.  +.++.  ...+++||.+++..+..-.+.+  .++++++
T Consensus       180 ~~~~~~~~~L~~g~~~~~~~~~~~-~~l~v~~G~v~v~--g~~~~--~~~l~~gd~~~l~~~~~l~l~a--~~~a~~L  250 (256)
T 2vec_A          180 QQVWLHHIVLDKGESANFQLHGPR-AYLQSIHGKFHAL--THHEE--KAALTCGDGAFIRDEANITLVA--DSPLRAL  250 (256)
T ss_dssp             SSCEEEEEEECTTCEEEEECSSSE-EEEEEEESCEEEE--ETTEE--EEEECTTCEEEEESCSEEEEEE--SSSEEEE
T ss_pred             CCcEEEEEEECCCCEEEEecCCCe-EEEEEEECEEEEC--Ccccc--ceEECCCCEEEECCCCeEEEEe--CCCCEEE
Confidence            367788899999986543333343 7899999998875  11112  3579999999997665444444  2455554

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=84.03  E-value=4.6  Score=34.96  Aligned_cols=70  Identities=10%  Similarity=0.043  Sum_probs=47.3

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCC-C----CeEEEEecCCCCE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPR-A----LVHFQLNVGNEPA  170 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~-G----~~H~~~N~G~~~a  170 (240)
                      ..+.+..+.|++|+.......+...-++||++|++.+.     |.  ...+++||.+++.. |    ..-.+.+.  +++
T Consensus       165 ~~~~~~~~~L~~g~~~~~~~~~~~~~~lyv~~G~v~v~-----g~--~~~l~~~d~~~~~~~~~~~~~~l~l~a~--~~a  235 (277)
T 2p17_A          165 VPVTMVEMIVEPGTTVVQDLPGHYNGFLYILEGSGVFG-----AD--NIEGKAGQALFFSRHNRGEETELNVTAR--EKL  235 (277)
T ss_dssp             SCEEEEEEEECTTCEEEEEEETTCEEEEEEEESEEEET-----TT--TEEEETTEEEEECCCCTTCEEEEEEEES--SSE
T ss_pred             CCCEEEEEEECCCCEEEeccCCCCEEEEEEEeCeEEEC-----CC--ceEeCCCcEEEEcCCCCCccceEEEEeC--CCc
Confidence            46889999999999654333334467999999998762     31  13689999999985 5    33334442  356


Q ss_pred             EEEE
Q 045405          171 TFIP  174 (240)
Q Consensus       171 ~~i~  174 (240)
                      .++.
T Consensus       236 ~~Ll  239 (277)
T 2p17_A          236 RLLL  239 (277)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=82.30  E-value=3.5  Score=30.28  Aligned_cols=52  Identities=17%  Similarity=0.222  Sum_probs=37.7

Q ss_pred             EEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe-EEEEEECCCCEE
Q 045405          100 LFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT-FFSKVLTPGKVF  152 (240)
Q Consensus       100 ~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~-~~~~~l~~GDv~  152 (240)
                      +....+++|..+-.. ...+..+.+|++|++++...+++|+ .....+.+||++
T Consensus        28 ~~~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~   80 (149)
T 2pqq_A           28 MSEVTLARGDTLFHE-GDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELI   80 (149)
T ss_dssp             CEEEEECTTCEEECT-TSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEE
T ss_pred             ceEEEeCCCCEEECC-CCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEe
Confidence            346778888765322 2234789999999999998877664 345688999987

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=82.25  E-value=3.7  Score=35.92  Aligned_cols=57  Identities=16%  Similarity=0.173  Sum_probs=41.3

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCC-eEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGT-EAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQL  163 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~-Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~  163 (240)
                      -+++.++++.+....   .. +.. .++.|++| +++..   +++  ...+++||.+++|++...+..
T Consensus       229 ~F~v~~~~~~~~~~~---~~-~~~~~il~v~~G-~~i~~---~~~--~~~l~~G~~~~ipa~~~~~~i  286 (300)
T 1zx5_A          229 NFGLEVVDVTGTAEI---KT-GGVMNILYAAEG-YFILR---GKE--TADLHRGYSCLVPASTDSFTV  286 (300)
T ss_dssp             SEEEEEEEEEEEEEE---EC-CSBCEEEEEEES-CEEEE---SSS--EEEECTTCEEEECTTCCEEEE
T ss_pred             eEEEEEEEECCceEE---ec-CCceEEEEEccc-EEEEe---CCe--EEEEccceEEEEeCCCceEEE
Confidence            467888888743222   23 557 89999999 88765   344  458999999999999865544

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=81.45  E-value=2.7  Score=30.69  Aligned_cols=53  Identities=11%  Similarity=0.088  Sum_probs=33.7

Q ss_pred             EEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe-EE---EEEECCCCEEE
Q 045405          100 LFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT-FF---SKVLTPGKVFL  153 (240)
Q Consensus       100 ~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~-~~---~~~l~~GDv~v  153 (240)
                      +....+++|..+-. -...+..+.+|++|++++...+++|+ ..   ...+.+||++=
T Consensus        29 ~~~~~~~~g~~i~~-~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG   85 (142)
T 3mdp_A           29 SEEKSFPTGSVIFK-ENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG   85 (142)
T ss_dssp             EEEEEECTTCEEEC-TTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred             hcEEecCCCCEEEe-CCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence            45677888875422 22345799999999999987776664 23   46789999874

>1xe7_A YML079WP, hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic region; jelly roll motif, cupin superfamily, structural genomics; HET: GUN; 1.75A {Saccharomyces cerevisiae} SCOP: b.82.1.16 PDB: 1xe8_A*

Probab=80.33  E-value=24  Score=29.24  Aligned_cols=111  Identities=17%  Similarity=0.132  Sum_probs=67.1

Q ss_pred             eEEEEEEEcCCc-ccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECC----CC--EEEeCCCCeEEEEec-CCCC
Q 045405           98 VALFRIDLDVGG-INPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTP----GK--VFLIPRALVHFQLNV-GNEP  169 (240)
Q Consensus        98 ls~~~v~l~pGg-~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~----GD--v~v~P~G~~H~~~N~-G~~~  169 (240)
                      .+....-|.++. ...+|-- +++|+.+-..|.....++.++|+..+.+|.+    |+  -++||+|........ +++-
T Consensus        79 ~TaIYfLL~~~~~~S~wHRv-~sdEiW~~h~G~p~~~li~~dg~~~~~~LG~dl~~Ge~pQ~vVPaG~WqaA~~~~~~~~  157 (203)
T 1xe7_A           79 STLIYYLLTPDSPIGKFHKN-INRIIHILQRGKGQYVLVYPDGQVKSFKVGFDYKNGEVSQWVVPGGVFKASFLLPNEEF  157 (203)
T ss_dssp             CEEEEEEEBTTBCEEEEEEE-SSCEEEEEEEECEEEEEECTTSCEEEEEESSCGGGTCBSEEEECTTCEEEEEECCCTTT
T ss_pred             eeEEEEEEcCCCCcccceee-CCCEEEEEEcCCccEEEEcCCCCEEEEEeCCCcccCcccEEEEcCCEEEEeEecCCCCc
Confidence            345555677776 4534433 6899999999976666778888765666643    55  379999987766543 2222


Q ss_pred             --EEEEEEEeCCCCCceeccchhhcCCCCCCHH-HHHhhcCCCHHHHHHHHhh
Q 045405          170 --ATFIPIFNTQNPGVSDSIGTLFDTTPPVPNE-VLTKSFRVGDDVINTIRAA  219 (240)
Q Consensus       170 --a~~i~~~~s~~Pg~~~~~~~lf~s~~~~p~~-vla~af~v~~~~v~~l~~~  219 (240)
                        ..+++..  -.||+..-...+      .+.+ -|.+-|-  ++.++.|+..
T Consensus       158 ~~~tLVgCt--VaPGFdF~dFel------~~~~~~L~~~~P--~~~~~~l~~l  200 (203)
T 1xe7_A          158 DNGFLISEV--VVPGFDFEDHTF------LKGEDELKHLVG--PEKAAELAFL  200 (203)
T ss_dssp             TTCEEEEEE--ESSCCCGGGEEE------CCHHHHHHHHHC--HHHHHHTGGG
T ss_pred             ccceEEEEE--ecCCccchhcEe------cCCcHHHHHHCC--HHHHHHHHHH
Confidence              2344322  357765533222      3455 5555553  7777777643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d2et1a1	201	b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare	4e-56
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	3e-27
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	4e-19
g1dgw.1	168	b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bea	2e-26
d1fxza2	174	b.82.1.2 (A:297-470) Seed storage 7S protein {Soyb	2e-25
d1uika2	185	b.82.1.2 (A:351-535) Seed storage 7S protein {Soyb	1e-24
d1od5a2	173	b.82.1.2 (A:321-493) Seed storage 7S protein {Soyb	8e-24
d2phla2	162	b.82.1.2 (A:220-381) Seed storage 7S protein {Fren	6e-22
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	4e-16
d1dgwa_	178	b.82.1.2 (A:) Seed storage 7S protein {Jack bean (	3e-14
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	1e-12
d2phla1	200	b.82.1.2 (A:11-210) Seed storage 7S protein {Frenc	6e-11
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	1e-07
d1o4ta_	115	b.82.1.9 (A:) Hypothetical protein TM1287 {Thermot	2e-07
d1v70a_	105	b.82.1.9 (A:) Hypothetical protein TTHA0104 {Therm	1e-06
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	3e-06
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	0.001
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	1e-05
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	1e-05
d1x82a_	190	b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {	3e-05
d1sq4a_	273	b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {	8e-05
d1vj2a_	114	b.82.1.10 (A:) Hypothetical protein TM1459 {Thermo	1e-04
d1rc6a_	253	b.82.1.11 (A:) Hypothetical protein YlbA {Escheric	0.002
d1od5a1	245	b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea	0.002
d2phda1	351	b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Ps	0.003
d1sefa_	250	b.82.1.11 (A:) Hypothetical protein EF2996 {Entero	0.004

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 201

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  175 bits (446), Expect = 4e-56
 Identities = 86/195 (44%), Positives = 119/195 (61%), Gaps = 5/195 (2%)

Query: 29  SDPDPLQDVCIADLNA-TISINGFPCKPASNVTSDDFFTD-FSKDPTTFDVFKRAVTFGD 86
           +DPDPLQD C+ADL+   +S+NG  CKP S    D  F+   +K   T      AVT  D
Sbjct: 1   TDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60

Query: 87  VFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN---NTFFS 143
           V  +P  NT GV++ R+D   GG NPPH HPR TE G+V +G +LVG++ +    N  +S
Sbjct: 61  VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120

Query: 144 KVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLT 203
           +V+  G+ F+IPR L+HFQ NVG   A  +  FN+QNPG+     TLF + PP+P  VLT
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180

Query: 204 KSFRVGDDVINTIRA 218
           K+ RV   V+  +++
Sbjct: 181 KALRVEAGVVELLKS 195

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score =  105 bits (262), Expect = 3e-27
 Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 8/168 (4%)

Query: 54  KPASNVTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPP 113
            P   V     +    ++P   +  K  V   D   F    T  +A   + ++ G +   
Sbjct: 210 GPNGEVPYPFTYRLLEQEPIESEGGK--VYIADSTNFKVSKT--IASALVTVEPGAMREL 265

Query: 114 HTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI 173
           H HP   E      G   + +  ++    +     G V  +P A+ H+  N+G+EP  F+
Sbjct: 266 HWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFL 325

Query: 174 PIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARA 221
            IF   +        +L      +P   +     +G D  + +   + 
Sbjct: 326 EIFKDDHYADV----SLNQWLAMLPETFVQAHLDLGKDFTDVLSKEKH 369

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score = 82.8 bits (204), Expect = 4e-19
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 5/127 (3%)

Query: 90  FPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPG 149
            P    + +A   + L  G I   H H    E   +  G+  V +V      F   +  G
Sbjct: 66  LPIS--ENLASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRSFIDDVGEG 122

Query: 150 KVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVG 209
            ++  P  L H       E A F+ +F+  +   + S   L D     P EV+  +F V 
Sbjct: 123 DLWYFPSGLPHSIQA-LEEGAEFLLVFDDGSFSEN-STFQLTDWLAHTPKEVIAANFGVT 180

Query: 210 DDVINTI 216
            + I+ +
Sbjct: 181 KEEISNL 187

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 174

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score = 96.2 bits (239), Expect = 2e-25
 Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 10/159 (6%)

Query: 71  DPTTFDVFKR---AVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTR 127
             ++ D++     +VT      FPA++   ++     L    +  PH +           
Sbjct: 12  QTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALN 71

Query: 128 GTVLVGLVTTN-NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDS 186
           G  L+ +V  N    F   L  G+V ++P+  V    +  ++   ++       P +   
Sbjct: 72  GRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARS-QSDNFEYVSFKTNDTPMIGTL 130

Query: 187 IG--TLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQS 223
            G  +L +  P    EV+  +F +       I+      
Sbjct: 131 AGANSLLNALPE---EVIQHTFNLKSQQARQIKNNNPFK 166

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 185

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 93.9 bits (233), Expect = 1e-24
 Identities = 28/181 (15%), Positives = 63/181 (34%), Gaps = 17/181 (9%)

Query: 58  NVTSDDF-FTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTH 116
            ++S+D  F   S+DP   +   + +        P +    V L  +D++ G +  PH +
Sbjct: 2   TISSEDKPFNLRSRDPIYSNKLGK-LFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFN 60

Query: 117 PRGTEAGIVTRGTVLVGLVTTNNTF--------------FSKVLTPGKVFLIPRALVHFQ 162
            +     ++  G   + LV                    +   L+   +F+IP       
Sbjct: 61  SKAIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVV 120

Query: 163 LNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQ 222
               +         N +N   +   G+  +    +P++V   +F      I  +  ++++
Sbjct: 121 NATSDLNFFAFG-INAENNQRNFLAGSKDNVISQIPSQVQELAFPGSAKDIENLIKSQSE 179

Query: 223 S 223
           S
Sbjct: 180 S 180

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 173

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 92.0 bits (228), Expect = 8e-24
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 9/157 (5%)

Query: 71  DPTTFDVFKR---AVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTR 127
            P+  D +      ++  +    PA+   G++   + L   GI  PH +        VTR
Sbjct: 17  RPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTR 76

Query: 128 GTVLVGLVTTN-NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDS 186
           G   V +V    N  F   L  G++ ++P+  V  +            +F T +  VS  
Sbjct: 77  GKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYV--VFKTHHNAVSSY 134

Query: 187 IGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQS 223
           I  +F   P    EVL+ S+ +G   +  ++      
Sbjct: 135 IKDVFRAIPS---EVLSNSYNLGQSQVRQLKYQGNSG 168

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 162

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 86.5 bits (214), Expect = 6e-22
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 15/147 (10%)

Query: 94  NTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLV-------TTNNTFFSKVL 146
           N+  V +  I+++ G +  PH + +     +V  G   V LV       T     +   L
Sbjct: 16  NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAEL 75

Query: 147 TPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNP------GVSDSIGTLFDTTPPVPNE 200
           +   VF+IP A         N   T   I    N          + I ++         +
Sbjct: 76  SKDDVFVIPAAYPVAIKATSNVNFTGFGINANNNNRNLLAGKTDNVISSIG--RALDGKD 133

Query: 201 VLTKSFRVGDDVINTIRAARAQSSWIN 227
           VL  +F    D +  +   ++ S +++
Sbjct: 134 VLGLTFSGSGDEVMKLINKQSGSYFVD 160

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score = 71.5 bits (175), Expect = 4e-16
 Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 9/130 (6%)

Query: 94  NTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFL 153
           N +   + +       I  PH H        V  G  ++ LV  ++   S  L PG    
Sbjct: 40  NLRDYRIVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNNDDRD-SYNLHPGDAQR 97

Query: 154 IPRALVHFQLNVGNEPATFIPIF--NTQNPGVSDSIGTLFDTTPP-----VPNEVLTKSF 206
           IP    ++ +N  +     +         PG  D                  + +L  SF
Sbjct: 98  IPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSF 157

Query: 207 RVGDDVINTI 216
               + IN +
Sbjct: 158 HSEFEEINRV 167

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Length = 178

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

 Score = 66.5 bits (162), Expect = 3e-14
 Identities = 24/140 (17%), Positives = 37/140 (26%), Gaps = 9/140 (6%)

Query: 94  NTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFL 153
           N +   +         +  PH H       +V  G  ++ LV   +   +  L  G    
Sbjct: 37  NLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVN-PDGRDTYKLDQGDAIK 94

Query: 154 IPRALVHFQLNVGNEPATFIPIF--NTQNPGVSDSIGTLFDTTPP-----VPNEVLTKSF 206
           I      + +N  N     I  F    + PG  +          P          L  S+
Sbjct: 95  IQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASY 154

Query: 207 RVGDDVINTIRAARAQSSWI 226
               D I        Q   I
Sbjct: 155 DSPYDEIEQTLLQEEQEGVI 174

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 62.6 bits (152), Expect = 1e-12
 Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 9/142 (6%)

Query: 94  NTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFL 153
           N +   +   +     +  PH H       ++  GT ++ LV  ++   S  L  G    
Sbjct: 36  NLRDYRILEFNSKPNTLLLPH-HADADYLIVILNGTAILTLVNNDDRD-SYNLQSGDALR 93

Query: 154 IPRALVHFQLNVGNEPATFIPIF----NTQNPGVSDSIGTLFDTTPPV---PNEVLTKSF 206
           +P    ++ +N  N+    +       N      S  + +       +      +L  S+
Sbjct: 94  VPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQAQQSYLQGFSKNILEASY 153

Query: 207 RVGDDVINTIRAARAQSSWINI 228
               + IN +   R +      
Sbjct: 154 DTKFEEINKVLFGREEGQQQGE 175

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 57.6 bits (139), Expect = 6e-11
 Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 12/134 (8%)

Query: 94  NTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN-----NTFFSKVLTP 148
           N +   L         +  P          +V  G+ ++ LV  +         S     
Sbjct: 38  NLEDYRLVEFRSKPETLLLPQ-QADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIF 96

Query: 149 GKVFLIPRALVHFQLNVG-NEPATFIPIFNTQN-PGVSDSIGTLFDTTPPV----PNEVL 202
                IP   + + +N    E    I +    N P + +   +  +            +L
Sbjct: 97  SDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHIL 156

Query: 203 TKSFRVGDDVINTI 216
             SF    + IN +
Sbjct: 157 EASFNSKFEEINRV 170

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 10/107 (9%)

Query: 105 LDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLN 164
           +  G + P H H   +    +  G      V          +  G   L P+   H   N
Sbjct: 61  IMPGEVAPSHRHN-QSALRFIVEGKGAFTAVDGE----RTPMNEGDFILTPQWRWHDHGN 115

Query: 165 VGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDD 211
            G+EP  ++   +   P V+             P E    + + GD 
Sbjct: 116 PGDEPVIWLDGLD--LPLVNILGCGFA---EDYPEEQQPVTRKEGDY 157

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} Length = 115

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.3 bits (109), Expect = 2e-07
 Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 5/98 (5%)

Query: 79  KRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN 138
           K  V    +    A++ +     R+ L  G     H H    E   +  G  +      +
Sbjct: 20  KGEVEMAHLLSKEAMHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNGKD 79

Query: 139 NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176
                     G V        H   N GN    F+ + 
Sbjct: 80  VPIK-----AGDVCFTDSGESHSIENTGNTDLEFLAVI 112

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} Length = 105

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 16/86 (18%), Positives = 24/86 (27%), Gaps = 5/86 (5%)

Query: 91  PAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGK 150
           P   ++ +      L  G     H H    +      G V+V            +L PG 
Sbjct: 21  PVFQSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVV-----RVGEEEALLAPGM 75

Query: 151 VFLIPRALVHFQLNVGNEPATFIPIF 176
               P    H   N    PA  + + 
Sbjct: 76  AAFAPAGAPHGVRNESASPALLLVVT 101

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 45.2 bits (106), Expect = 3e-06
 Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 4/118 (3%)

Query: 98  VALFRIDLDVGGIN--PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIP 155
             L   +          PH H +  E     +G+  +   + N T  ++VL+ G    +P
Sbjct: 46  FTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVP 105

Query: 156 RALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFD--TTPPVPNEVLTKSFRVGDD 211
           R + H       +      I       +   +GT     T  P        S   G D
Sbjct: 106 RNVTHTFQIQDPDTEMTGVIVPGGFEDLFYYLGTNATDTTHTPYIPSSSDSSSTTGPD 163

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 6/76 (7%)

Query: 108 GGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN 167
             +  P     G  A  V  G V+V +     T     L  G V  IP  +     +   
Sbjct: 259 STVTVPTWSFPGACAFQVQEGRVVVQIGDYAAT----ELGSGDVAFIPGGVEFKYYSEAY 314

Query: 168 EPATFIPIFNTQNPGV 183
                    ++ + G+
Sbjct: 315 FSKVL--FVSSGSDGL 328

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 21/134 (15%), Positives = 34/134 (25%), Gaps = 8/134 (5%)

Query: 87  VFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVL 146
           V            +  +    G   P H H    E  +V  G      +T +   +  +L
Sbjct: 31  VMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGK---LELTLDGERY--LL 85

Query: 147 TPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLF---DTTPPVPNEVLT 203
             G    IP    H      +               +   IG  +   +  P    EV  
Sbjct: 86  ISGDYANIPAGTPHSYRMQSHRTRLVSYTMKGNVAHLYSVIGNPYDHAEHPPYASEEVSN 145

Query: 204 KSFRVGDDVINTIR 217
           + F     V   + 
Sbjct: 146 ERFAEAAAVATIVF 159

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 24/211 (11%), Positives = 55/211 (26%), Gaps = 19/211 (9%)

Query: 1   MISSSSMSLFGLLFGLIVLLMLPFPSRASDPDPLQDVCIADLNATISINGFPCKPASNVT 60
                +++    + G         P  + +    +    A +   + ++      ++ + 
Sbjct: 113 YTMKGNVAHLYSVIGNPYDHAEHPPYASEEVSNERFAEAAAVATIVFLDEAKPACSAKLA 172

Query: 61  SDDFFT-DFSKDPTTFDVFKRAVTFGDVFGFPAVNTQ---GVALFRIDLDVGGINPPHTH 116
                               R +T   +    A          +   +   G     H H
Sbjct: 173 ELTELPDGAVPYVLESGEGDRLLTGDQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDHYH 232

Query: 117 PRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF 176
              TE      G      + T+       L PG    +P   VH    + +     + + 
Sbjct: 233 EYHTETFYCLEGQ---MTMWTDGQEI--QLNPGDFLHVPANTVH-SYRLDSHYTKMVGVL 286

Query: 177 NTQNPGVSDS----IGTLFD--TTPPVPNEV 201
               PG+ +     +G  ++    P  P  +
Sbjct: 287 ---VPGLFEPFFRTLGDPYEGHIFPCKPQAL 314

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 190

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 16/64 (25%), Positives = 26/64 (40%)

Query: 114 HTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI 173
           H      E  +  +G   + L T         + PG V  +P    H  +N+G+EP  F+
Sbjct: 91  HAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFL 150

Query: 174 PIFN 177
            I+ 
Sbjct: 151 AIYP 154

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Length = 273

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.5 bits (94), Expect = 8e-05
 Identities = 21/146 (14%), Positives = 40/146 (27%), Gaps = 10/146 (6%)

Query: 96  QGVALFRIDLDVGG-INPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLI 154
           +  + + ++L   G  + P   P       V  G + +   T         + PG    I
Sbjct: 64  ETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSL---TLQGQ--VHAMQPGGYAFI 118

Query: 155 PRALVHFQLNVGNEPATFIPIFNTQNP----GVSDSIGTLFDTTPPVPNEVLTKSFRVGD 210
           P    +   N   +   F  I           + ++  T      P+        +    
Sbjct: 119 PPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVMPDTEGRWSTTR 178

Query: 211 DVINTIRAARAQSSWINILDGRSISF 236
            V  +        + +N   G  I F
Sbjct: 179 FVDMSDMRHDMHVNIVNFEPGGVIPF 204

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Length = 114

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 6/87 (6%)

Query: 90  FPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPG 149
               +     +    ++ GG+   H+HP       V +G      +T       + +  G
Sbjct: 28  IGLKDAPNFVMRLFTVEPGGLIDRHSHP-WEHEIFVLKGK-----LTVLKEQGEETVEEG 81

Query: 150 KVFLIPRALVHFQLNVGNEPATFIPIF 176
               +    +H   N  +    F+ + 
Sbjct: 82  FYIFVEPNEIHGFRNDTDSEVEFLCLI 108

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Length = 253

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 4/79 (5%)

Query: 97  GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPR 156
               + + L   G N       G E  +     V+ G +T      +  L+ G     P 
Sbjct: 50  SFVDYLVTLHQNGGNQQGFGGEGIETFL----YVISGNITAKAEGKTFALSEGGYLYCPP 105

Query: 157 ALVHFQLNVGNEPATFIPI 175
             +   +N   E +     
Sbjct: 106 GSLMTFVNAQAEDSQIFLY 124

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 26/110 (23%)

Query: 97  GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN--NTF------------- 141
           GV + +  L+  G++ P   P      IV +G   +G        TF             
Sbjct: 38  GVTVSKRTLNRNGLHLPSYSPYPQMI-IVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSR 96

Query: 142 ----------FSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNP 181
                       +    G V +IP  + ++  N G+EP   I + +T N 
Sbjct: 97  SQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNF 146

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Length = 351

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

 Score = 35.9 bits (82), Expect = 0.003
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 105 LDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLN 164
           L      P H H        V  G  +  +V  +       ++ G + L P    H  +N
Sbjct: 94  LGPRETAPEHRHS-QNAFRFVVEGEGVWTVVNGDPV----RMSRGDLLLTPGWCFHGHMN 148

Query: 165 VGNEPATFIPIFN 177
             ++P  +I   +
Sbjct: 149 DTDQPMAWIDGLD 161

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Length = 250

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 7/79 (8%), Positives = 17/79 (21%), Gaps = 4/79 (5%)

Query: 97  GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPR 156
               +       G         G +  +     V+ G +  ++   +  L  G       
Sbjct: 47  TFVDYIATFHKNGQQTTGFGGDGIQTLV----YVIDGRLRVSDGQETHELEAGGYAYFTP 102

Query: 157 ALVHFQLNVGNEPATFIPI 175
            +  +  N           
Sbjct: 103 EMKMYLANAQEADTEVFLY 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	100.0
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	100.0
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	100.0
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	100.0
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	99.97
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	99.96
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	99.94
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	99.94
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	99.92
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	99.91
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	99.91
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	99.9
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	99.9
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	99.89
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.6
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.55
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.51
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.48
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	99.48
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	99.44
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	99.35
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	99.32
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	99.23
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	99.19
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	99.18
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	99.17
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	99.15
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.15
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.15
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.14
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.14
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.07
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.06
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	99.04
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.0
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.98
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	98.98
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.96
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	98.93
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.76
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.74
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	98.7
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.69
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.57
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	98.56
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	98.12
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	98.1
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	97.92
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	97.57
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	97.49
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	97.22
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	97.12
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	97.07
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	97.07
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	97.06
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	97.03
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	96.98
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	96.96
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	96.85
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	96.83
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	96.58
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	96.33
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	96.32
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	95.38
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	95.13
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	93.23
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	93.07
d1znpa1	140	Hypothetical protein Atu3615 {Agrobacterium tumefa	92.25
d3bb6a1	109	Uncharacterized protein YeaR {Escherichia coli [Ta	90.6
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	90.43
d1xrua1	277	5-keto-4-deoxyuronate isomerase KduI {Escherichia	90.12
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	89.9
d1yuda1	158	Hypothetical protein SO0799 {Shewanella oneidensis	88.6
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	88.5
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	88.07
d1e5ra_	290	Type II Proline 3-hydroxylase (proline oxidase) {S	87.26
d3dl3a1	96	Tellurite resistance protein B, TehB {Vibrio fisch	87.18
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	86.77
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	84.47
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	84.33
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	81.91
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	81.86
d1ywka1	260	5-keto-4-deoxyuronate isomerase KduI {Enterococcus	81.52
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	81.0

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=3.2e-58  Score=389.84  Aligned_cols=195  Identities=45%  Similarity=0.783  Sum_probs=186.1

Q ss_pred             cCCCCCCceeeccCCCc-cccCCccCCCCCCCCCCCeee-ecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEc
Q 045405           29 SDPDPLQDVCIADLNAT-ISINGFPCKPASNVTSDDFFT-DFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLD  106 (240)
Q Consensus        29 ~d~~~~~dfcva~~~~~-~~~~g~~ck~~~~v~~~df~f-~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~  106 (240)
                      +||||||||||||+.++ +++||||||+++.++.+||+| +|.++++++|+.|++++.+++.+||+|+++|+|++|++|+
T Consensus         1 sdp~~lqdfcvad~~~~~~~~~g~~ck~~~~~~~~~f~~~~l~~~~~~~~~~g~~vt~~~~~~fP~Ln~lglS~~rv~l~   80 (201)
T d2et1a1           1 TDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFA   80 (201)
T ss_dssp             CCCCCSSSCCCBCCCTTSCCCSSCCBCCGGGCCSCTTCCCTTSSCCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEEC
T ss_pred             CCCcccceeEeecCCCCccccCCcccCChhhccccceeecccccCCCccCCCCcEEEEeehhcCccccccceeEEEEEEC
Confidence            69999999999999764 799999999999999999999 7999999999999999999999999999999999999999


Q ss_pred             CCcccCCccCCCCCeEEEEeeCEEEEEEEcc---CCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCc
Q 045405          107 VGGINPPHTHPRGTEAGIVTRGTVLVGLVTT---NNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGV  183 (240)
Q Consensus       107 pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~---~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~  183 (240)
                      |||+++|||||+|+|++||++|+++++++++   +++.+.++|++||+++||+|++||++|.|+++++++++|++++||.
T Consensus        81 pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~~i~~f~s~~pg~  160 (201)
T d2et1a1          81 PGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGI  160 (201)
T ss_dssp             TTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEESSSCCCC
T ss_pred             CCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEecCCCEEEECCCCeEEEEEcCCCCEEEEEEecCCCCcc
Confidence            9999999999999999999999999999864   5688999999999999999999999999999999999999999999


Q ss_pred             eeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCCC
Q 045405          184 SDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQS  223 (240)
Q Consensus       184 ~~~~~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~~~  223 (240)
                      +.++.++|++.++||+|||+++|++|+++++|||++|.+.
T Consensus       161 ~~~~~~~f~~~~~~p~eVLa~af~i~~~~v~kLks~f~g~  200 (201)
T d2et1a1         161 VFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFAGG  200 (201)
T ss_dssp             EEHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHTTTTC
T ss_pred             eehhhhhhccCCCCCHHHHHHHhCCCHHHHHHHHhhccCC
Confidence            9999999998888999999999999999999999998754

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=100.00  E-value=1.5e-34  Score=238.81  Aligned_cols=152  Identities=17%  Similarity=0.305  Sum_probs=137.8

Q ss_pred             CCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-eEEEEEECCCC
Q 045405           72 PTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-TFFSKVLTPGK  150 (240)
Q Consensus        72 ~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~~~~~~l~~GD  150 (240)
                      ++..++.||+++.++..+||+|+++|+++++++|+||++.+||||++|+|+.||++|++++++++++| +.++++|++||
T Consensus        16 ~d~~~~~gG~i~~~~~~~fP~L~~~~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~Gd   95 (174)
T d1fxza2          16 PDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGR   95 (174)
T ss_dssp             CSEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTC
T ss_pred             CCcCcCCCeEEEEecHHHhhhhhhcCceEEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEecCCCceeEEEEEcCCc
Confidence            66778999999999999999999999999999999999999999999999999999999999999876 67888999999


Q ss_pred             EEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceecc--chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcCCCceEE
Q 045405          151 VFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSI--GTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARAQSSWIN  227 (240)
Q Consensus       151 v~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~--~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~~~~~i~  227 (240)
                      ++++|+|.+||+.|.+ +...+++++++++|....++  .++|+   ++|+|||+++|+++.|++++|++.+....++.
T Consensus        96 v~vvP~G~~h~~~n~~-~~~~~v~~~~~~~~~~~~lag~~s~l~---~~~~~vl~~af~v~~eei~~lk~~q~~~~~~~  170 (174)
T d1fxza2          96 VLIVPQNFVVAARSQS-DNFEYVSFKTNDTPMIGTLAGANSLLN---ALPEEVIQHTFNLKSQQARQIKNNNPFKFLVP  170 (174)
T ss_dssp             EEEECTTCEEEEEECS-TTEEEEEEESSSSCCEEESSSTTCTGG---GSCHHHHHHHHTCCHHHHHHHHHSCCCSSEEC
T ss_pred             EEEECCCCEEEEEeCC-CCeEEEEEEccCCCCcccccchhhhhh---cCCHHHHHHHHCcCHHHHHHHHhcCCceEeCC
Confidence            9999999999999955 67888888888888877664  57888   79999999999999999999999876555443

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=100.00  E-value=1.4e-34  Score=238.87  Aligned_cols=159  Identities=19%  Similarity=0.341  Sum_probs=139.0

Q ss_pred             eeeecCC--CCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-e
Q 045405           64 FFTDFSK--DPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-T  140 (240)
Q Consensus        64 f~f~l~~--~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-~  140 (240)
                      +.+++..  .++..|+.||+++.++..+||+|+++|+++++++|.||++.+||||++|+|++||++|+++++++++++ +
T Consensus        11 ~r~ni~~p~~~d~~n~~gG~i~~~~~~~fP~L~~lgls~~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~~   90 (173)
T d1od5a2          11 LHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNA   90 (173)
T ss_dssp             CEEECCSGGGCSEEETTTEEEEEESTTTCTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCE
T ss_pred             eecCCCCcccCCccCCCCeEEEEecHHHhhhhhhccceEEEEEEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCCce
Confidence            3345543  356668999999999999999999999999999999999999999999999999999999999999876 6


Q ss_pred             EEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceeccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhc
Q 045405          141 FFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAAR  220 (240)
Q Consensus       141 ~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~  220 (240)
                      .++.+|++||+++||+|.+||+.| +++.+++++++++.++....+. ++|+   ++|++||+++|+++.+++++|++++
T Consensus        91 ~~~~~l~~Gdv~~iP~G~~h~~~n-~~~~~~~v~~~~~~~~~~~~~~-s~l~---~~p~evl~~af~v~~e~v~~lk~~~  165 (173)
T d1od5a2          91 VFDGELRRGQLLVVPQNFVVAEQG-GEQGLEYVVFKTHHNAVSSYIK-DVFR---AIPSEVLSNSYNLGQSQVRQLKYQG  165 (173)
T ss_dssp             EEEEEEETTCEEEECTTCEEEEEE-EEEEEEEEEEESSTTCCEEEHH-HHHH---HSCHHHHHHHHTCCHHHHHHHHHSS
T ss_pred             EEeEEecCCcEEEECCCCEEEEEc-CCCceEEEEeecCCchhhhhHH-HHHH---hCCHHHHHHHhCcCHHHHHHHHhcC
Confidence            778899999999999999999988 4567888888877777766665 6888   6999999999999999999999988


Q ss_pred             CCCceEE
Q 045405          221 AQSSWIN  227 (240)
Q Consensus       221 ~~~~~i~  227 (240)
                      ....+|.
T Consensus       166 ~~~~i~~  172 (173)
T d1od5a2         166 NSGPLVN  172 (173)
T ss_dssp             CSSSEEC
T ss_pred             CCCcccC
Confidence            7665553

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=100.00  E-value=6.4e-33  Score=231.01  Aligned_cols=165  Identities=15%  Similarity=0.188  Sum_probs=135.5

Q ss_pred             CCCCCCeeeecCC-CCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEc
Q 045405           58 NVTSDDFFTDFSK-DPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVT  136 (240)
Q Consensus        58 ~v~~~df~f~l~~-~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~  136 (240)
                      +++++++.|+|.+ .+.++|.. |+++.+++.++|.|+++|+++++++|+||++.+||||++|+|++||++|++++++++
T Consensus         2 ~~~~~~~pfnl~~~~p~~~n~~-G~~~~~~~~~~p~L~~~~v~~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~   80 (185)
T d1uika2           2 TISSEDKPFNLRSRDPIYSNKL-GKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVG   80 (185)
T ss_dssp             GGGCSSSCEETTSSCCSEESSS-EEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEE
T ss_pred             ccccCCCccccccCCCceeCCC-CeEEEeChhhChhhhhcCchhheeecCCCceeeeeecCCCCEEEEEEeeEEEEEEEc
Confidence            5678899996554 55565554 679999999999999999999999999999999999999999999999999999998


Q ss_pred             cCC--------------eEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceec--cchhhcCCCCCCHH
Q 045405          137 TNN--------------TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDS--IGTLFDTTPPVPNE  200 (240)
Q Consensus       137 ~~g--------------~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~--~~~lf~s~~~~p~~  200 (240)
                      +++              +.+.++|++||+++||+|++||++|.++..++++.+.+..+...+..  ..++|+   +||++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~~d~~~v~~~~~~~~~~~~f~ag~~~~vl~---~~~~e  157 (185)
T d1uika2          81 IKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNFFAFGINAENNQRNFLAGSKDNVIS---QIPSQ  157 (185)
T ss_dssp             C------------CBCCEEEEEEECTTCEEEECTTCCEEEEESSSEEEEEEEETCTTCCEEESSSSSSBGGG---GSCHH
T ss_pred             cCccchhhccccccCcceeEEEEecCCcEEEECCCCEEEEEcCCCccEEEEEEcCCCCcccccccccccccc---cCCHH
Confidence            764              46788999999999999999999998775554443333333333322  257888   79999


Q ss_pred             HHHhhcCCCHHHHHHHHhhcCCCceE
Q 045405          201 VLTKSFRVGDDVINTIRAARAQSSWI  226 (240)
Q Consensus       201 vla~af~v~~~~v~~l~~~~~~~~~i  226 (240)
                      +|++||+++.+++++|++.+....++
T Consensus       158 vLa~aF~v~~~~~~kl~~~q~e~~i~  183 (185)
T d1uika2         158 VQELAFPGSAKDIENLIKSQSESYFV  183 (185)
T ss_dssp             HHHHHSSSCHHHHHHHHHHCCSCSEE
T ss_pred             HHHHHhCCCHHHHHHHHhcCCceEEe
Confidence            99999999999999999988765544

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=1.6e-28  Score=223.96  Aligned_cols=158  Identities=17%  Similarity=0.250  Sum_probs=140.7

Q ss_pred             CCCCCCCeeeecCCCCCccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEc
Q 045405           57 SNVTSDDFFTDFSKDPTTFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVT  136 (240)
Q Consensus        57 ~~v~~~df~f~l~~~~~~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~  136 (240)
                      .......|.|.+.+..+. ...||+++.+++.+||.++  ++++++++|+||++.+|||||+++|+.||++|++++++++
T Consensus       212 ~g~~~~~~~~~l~~q~P~-~~~gG~~~~~d~~~fp~~~--~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~  288 (372)
T d1j58a_         212 NGEVPYPFTYRLLEQEPI-ESEGGKVYIADSTNFKVSK--TIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFA  288 (372)
T ss_dssp             TCCCSSCSEEEGGGSCCE-ECSSEEEEEESTTTSTTCC--SCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEE
T ss_pred             CCCCCCcceeeccccCCc-ccCCccEEEeccccCCccC--ceeEEEEEECCCcccCCCCCCCCcEEEEEEECeEEEEEEc
Confidence            334456678865554445 4567889999999999999  6899999999999999999999999999999999999999


Q ss_pred             cCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceeccchhhcCCCCCCHHHHHhhcCCCHHHHHHH
Q 045405          137 TNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTI  216 (240)
Q Consensus       137 ~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~~~lf~s~~~~p~~vla~af~v~~~~v~~l  216 (240)
                      ++++.++.++++||+++||+|..|+++|+|+++++++.+|++..++.+.+.+++.    .+|.+|++++|+++++++++|
T Consensus       289 ~~g~~~t~~l~~GDv~~iP~g~~H~i~N~g~e~l~~l~vf~s~~~~~i~~~~~l~----~~P~~vv~~~~~~~~e~~~~l  364 (372)
T d1j58a_         289 SDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLA----MLPETFVQAHLDLGKDFTDVL  364 (372)
T ss_dssp             ETTEEEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEEESSSSCCCEEHHHHHH----TSCHHHHHHHHTCCHHHHTTC
T ss_pred             CCCceEEEEecCCcEEEECCCCeEEEEECCCCCEEEEEEECCCCcceeeHHHHhh----hCCHHHHHHHhCcCHHHHHHH
Confidence            8898888999999999999999999999999999999999999999999997654    499999999999999999999


Q ss_pred             HhhcC
Q 045405          217 RAARA  221 (240)
Q Consensus       217 ~~~~~  221 (240)
                      ++...
T Consensus       365 ~~~k~  369 (372)
T d1j58a_         365 SKEKH  369 (372)
T ss_dssp             CSSCC
T ss_pred             HhcCC
Confidence            87643

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.94  E-value=4.2e-27  Score=191.83  Aligned_cols=144  Identities=20%  Similarity=0.205  Sum_probs=114.0

Q ss_pred             cCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC-------eEEEEEEC
Q 045405           75 FDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN-------TFFSKVLT  147 (240)
Q Consensus        75 ~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-------~~~~~~l~  147 (240)
                      +|..| .++.++      ++++++++.+++|+||++.+||||++|+|++||++|++++++++++|       +.+..+|+
T Consensus         4 ~n~fg-~~~~~~------~n~l~~~v~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~   76 (162)
T d2phla2           4 GNEFG-NLTERT------DNSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELS   76 (162)
T ss_dssp             EETTE-EEEEEE------ETTTTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEE
T ss_pred             ccccC-ceeecC------CCCCCeEEEEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeec
Confidence            35666 456655      35679999999999999999999999999999999999999998876       35678999


Q ss_pred             CCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCce------eccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcC
Q 045405          148 PGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVS------DSIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARA  221 (240)
Q Consensus       148 ~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~------~~~~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~  221 (240)
                      +||+++||+|.+||+.|.++++++.+.+.+..+...+      .+.++++.+  ++|+|||+++|+++.++++||++++.
T Consensus        77 ~Gdv~vvP~G~~~~~~n~~~~~~v~~~~~~~~~~~~flaG~~~sv~~~~~~~--~~~~evL~~aF~v~~eevekl~~~q~  154 (162)
T d2phla2          77 KDDVFVIPAAYPVAIKATSNVNFTGFGINANNNNRNLLAGKTDNVISSIGRA--LDGKDVLGLTFSGSGDEVMKLINKQS  154 (162)
T ss_dssp             TTCEEEECTTCCEEEEESSSEEEEEEEESCTTCCEEESSSSSSBHHHHHHTS--TTHHHHHHHHSSSCHHHHHHHHTTCC
T ss_pred             CCcEEEECCCCEEEEEeCCCceEEEEEecCCCCcceeecCccccchhhhccc--CCCHHHHHHHhCCCHHHHHHHHhhCC
Confidence            9999999999999999987655444433333332221      222344444  79999999999999999999999988


Q ss_pred             CCceEE
Q 045405          222 QSSWIN  227 (240)
Q Consensus       222 ~~~~i~  227 (240)
                      ...+++
T Consensus       155 e~~~v~  160 (162)
T d2phla2         155 GSYFVD  160 (162)
T ss_dssp             CCSEEE
T ss_pred             ceEEEe
Confidence            766553

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=99.94  E-value=3.5e-26  Score=188.87  Aligned_cols=160  Identities=15%  Similarity=0.148  Sum_probs=123.8

Q ss_pred             CCeeeecCCCCCccCcCCceEEEec--ccCCCCCCcc-ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccC
Q 045405           62 DDFFTDFSKDPTTFDVFKRAVTFGD--VFGFPAVNTQ-GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN  138 (240)
Q Consensus        62 ~df~f~l~~~~~~~~~~G~~v~~~~--~~~~P~l~~~-gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~  138 (240)
                      +.|+|...+........+|+++.++  ....+.|+++ .+++.+++++||++.+|| |++|+|++||++|++++++++++
T Consensus         2 npy~F~~~~~~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph-~~~a~ev~yV~~G~g~v~~v~~~   80 (178)
T d1dgwa_           2 NPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPD   80 (178)
T ss_dssp             CTTEECGGGEEEEEEETTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEETT
T ss_pred             CCeeccccccccceECCCCcEEEecccCCcchhccCccceEEEEEEecCCcccccc-cCCCCEEEEEEEeEEEEEEecCC
Confidence            3466754332222355666676664  5666778877 489999999999999999 57999999999999999999885


Q ss_pred             CeEEEEEECCCCEEEeCCCCeEEEEecCC-CCEEEEEEEeC-CCCCce---ec-----cchhhcCCCCCCHHHHHhhcCC
Q 045405          139 NTFFSKVLTPGKVFLIPRALVHFQLNVGN-EPATFIPIFNT-QNPGVS---DS-----IGTLFDTTPPVPNEVLTKSFRV  208 (240)
Q Consensus       139 g~~~~~~l~~GDv~v~P~G~~H~~~N~G~-~~a~~i~~~~s-~~Pg~~---~~-----~~~lf~s~~~~p~~vla~af~v  208 (240)
                      + ..+++|++||++++|+|.+||++|.++ +++.+++++.. .+++.+   ..     ..++|+   ++|++||++||++
T Consensus        81 ~-~~~~~l~~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~~~~n~~~~~~~f~~~~~~~~~svl~---~~~~evL~~aF~v  156 (178)
T d1dgwa_          81 G-RDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLS---AFSKNFLEASYDS  156 (178)
T ss_dssp             E-EEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGG---GSCHHHHHHHHTS
T ss_pred             c-eEEEEecCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccccccccccCcccHHH---hCCHHHHHHHhCC
Confidence            4 468899999999999999999999865 57777777654 333322   11     246888   7999999999999


Q ss_pred             CHHHHHHHHhhcCCCceE
Q 045405          209 GDDVINTIRAARAQSSWI  226 (240)
Q Consensus       209 ~~~~v~~l~~~~~~~~~i  226 (240)
                      +.+++++++..+...+.|
T Consensus       157 ~~e~~~kl~~~~~~~g~I  174 (178)
T d1dgwa_         157 PYDEIEQTLLQEEQEGVI  174 (178)
T ss_dssp             CHHHHHHHTTSCCSSSSE
T ss_pred             CHHHHHHHHhcccCCCcE
Confidence            999999998776655533

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=99.92  E-value=7.4e-25  Score=179.63  Aligned_cols=137  Identities=18%  Similarity=0.210  Sum_probs=111.8

Q ss_pred             CcCCceEEEecc--cCCCCCCccc-eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEE
Q 045405           76 DVFKRAVTFGDV--FGFPAVNTQG-VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVF  152 (240)
Q Consensus        76 ~~~G~~v~~~~~--~~~P~l~~~g-ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~  152 (240)
                      ...+|+++.++.  ...|.|++++ +++.+++++||++.+||| ++|+|++||++|++++++++++++ .++++++||++
T Consensus        19 ~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~~~~Ph~-~~a~ei~yV~~G~g~v~~v~~~~~-~~~~l~~GDv~   96 (170)
T d1uija1          19 ENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHH-ADADFLLFVLSGRAILTLVNNDDR-DSYNLHPGDAQ   96 (170)
T ss_dssp             ECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEE-ESEEEEEEEEESCEEEEEECSSCE-EEEEECTTEEE
T ss_pred             ccCCCcEEEEecccccchhhcchhheEEEEEEecCCccccccc-CCCCEEEEEEEEEEEEEEEeCCCc-EEEEecCCcEE
Confidence            355666776654  6678888875 999999999999999995 689999999999999999998665 47899999999


Q ss_pred             EeCCCCeEEEEecCCCC-EEEEEEE-eCCCCCcee---c-----cchhhcCCCCCCHHHHHhhcCCCHHHHHHHH
Q 045405          153 LIPRALVHFQLNVGNEP-ATFIPIF-NTQNPGVSD---S-----IGTLFDTTPPVPNEVLTKSFRVGDDVINTIR  217 (240)
Q Consensus       153 v~P~G~~H~~~N~G~~~-a~~i~~~-~s~~Pg~~~---~-----~~~lf~s~~~~p~~vla~af~v~~~~v~~l~  217 (240)
                      ++|+|.+||++|.++++ ++++.+. .+.+|+.+.   +     ..++|+   ++|+|||++||++++++++||.
T Consensus        97 ~vP~G~~h~~~n~~~~~~l~iv~~~~~~n~~~~~~~f~~~~~~~~~svl~---~~~~evLa~aF~v~~e~i~kl~  168 (170)
T d1uija1          97 RIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQ---GFSHNILETSFHSEFEEINRVL  168 (170)
T ss_dssp             EECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSSCCCGGG---GSCHHHHHHHHTSCHHHHHHHH
T ss_pred             EECCCCeEEEEEcCCCCcEEEEEecCCcCCCccccccccccCCCcccHhH---hCCHHHHHHHhCCCHHHHHHHh
Confidence            99999999999998755 4444433 344555432   2     247888   8999999999999999999986

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.91  E-value=1.4e-24  Score=182.72  Aligned_cols=155  Identities=16%  Similarity=0.190  Sum_probs=116.5

Q ss_pred             CeeeecCCCCCccCcCCceEEEecccCC--CCCCcc-ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC
Q 045405           63 DFFTDFSKDPTTFDVFKRAVTFGDVFGF--PAVNTQ-GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN  139 (240)
Q Consensus        63 df~f~l~~~~~~~~~~G~~v~~~~~~~~--P~l~~~-gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g  139 (240)
                      .|+|...+........+|+++.++..+.  +.|+++ ++++++++++||++..|||+ +|+|++||++|+++++++++++
T Consensus         2 py~F~~~~~~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~~-~a~ev~yV~~G~g~~~~v~~~~   80 (203)
T d1uika1           2 PFHFNSKRFQTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHA-DADYLIVILNGTAILTLVNNDD   80 (203)
T ss_dssp             TTEECGGGEEEEEECSSEEEEEECCTTSSCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEECSSC
T ss_pred             CeeeccccccCceECCCCeEEEecccCccchhhccccceEEEEEEecCCCccccccC-CCcEEEEEEEEEEEEEEEeCCC
Confidence            4666544422233455677888865332  345544 78999999999999999965 8999999999999999999865


Q ss_pred             eEEEEEECCCCEEEeCCCCeEEEEecCC-CCEEEEEEEeCC-CC---Cceec-----cchhhcCCCCCCHHHHHhhcCCC
Q 045405          140 TFFSKVLTPGKVFLIPRALVHFQLNVGN-EPATFIPIFNTQ-NP---GVSDS-----IGTLFDTTPPVPNEVLTKSFRVG  209 (240)
Q Consensus       140 ~~~~~~l~~GDv~v~P~G~~H~~~N~G~-~~a~~i~~~~s~-~P---g~~~~-----~~~lf~s~~~~p~~vla~af~v~  209 (240)
                      + .+++|++||++++|+|.+||++|.|+ +.+.++++.... .+   ..+.+     ..++|+   +|+++||++||+++
T Consensus        81 ~-~~~~l~~GDv~~iP~G~~~~~~N~~~~e~l~iv~~~~~~n~~~~~~~f~~~g~~~~~~vl~---gf~~~vL~~aF~v~  156 (203)
T d1uika1          81 R-DSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQAQQSYLQ---GFSKNILEASYDTK  156 (203)
T ss_dssp             E-EEEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGG---GSCHHHHHHHHTSC
T ss_pred             e-EEEEecCCCEEEECCCCeEEEEECCCCccEEEEEEecCCCCcccccccccccCccccchhH---hCCHHHHHHHhCCC
Confidence            4 58899999999999999999999886 456666554322 22   22222     246888   89999999999999


Q ss_pred             HHHHHHHHhhcCC
Q 045405          210 DDVINTIRAARAQ  222 (240)
Q Consensus       210 ~~~v~~l~~~~~~  222 (240)
                      .+++++|+..+..
T Consensus       157 ~e~~~kl~~~q~~  169 (203)
T d1uika1         157 FEEINKVLFGREE  169 (203)
T ss_dssp             HHHHHHHTTC---
T ss_pred             HHHHHHHHhcccc
Confidence            9999999776553

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=4.3e-25  Score=201.10  Aligned_cols=139  Identities=19%  Similarity=0.268  Sum_probs=124.0

Q ss_pred             CcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeC
Q 045405           76 DVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIP  155 (240)
Q Consensus        76 ~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P  155 (240)
                      -..||++++++..++|.++  ++++.++.|.||++++||||+++ |+.||++|++++++++++|+.+..+|++||+++||
T Consensus        52 ~~~gg~~r~~~~~~lp~~~--~~a~~~~~L~pga~~~pH~H~~a-e~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P  128 (372)
T d1j58a_          52 LEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFP  128 (372)
T ss_dssp             EETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEESSC-EEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEEC
T ss_pred             ccCCCeeEEeehhhChhhh--hhhheEEEECCCcCcCCcccCcc-cEEEEEeCEEEEEEEeCCCcEEEEEeccCCEEEEC
Confidence            3678999999999999999  79999999999999999999874 99999999999999999998888899999999999


Q ss_pred             CCCeEEEEecCCCCEEEEEEEeCCCCCcee--ccchhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcC
Q 045405          156 RALVHFQLNVGNEPATFIPIFNTQNPGVSD--SIGTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARA  221 (240)
Q Consensus       156 ~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~--~~~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~  221 (240)
                      +|.+|+++|. +++++++.+++.++++...  ...++|.   ++|.+||+++|+++.++++++++.+.
T Consensus       129 ~G~~H~i~n~-~dg~e~l~vf~~~~~~~~~~f~~~~~~~---~~p~evLa~af~v~~~~~~~i~~~e~  192 (372)
T d1j58a_         129 SGLPHSIQAL-EEGAEFLLVFDDGSFSENSTFQLTDWLA---HTPKEVIAANFGVTKEEISNLPGKEK  192 (372)
T ss_dssp             TTCCEEEEEE-EEEEEEEEEESCTTCCGGGEEEHHHHHH---TSCHHHHHHHHTCCTGGGTTSCSSCC
T ss_pred             CCCEEEEEeC-CCCcEEEEEECCCCcccccceeeccccc---cCCHHHHHHhhCCCHHHHhhcccccc
Confidence            9999999996 5679999999988875432  2245777   79999999999999999999977653

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.90  E-value=4.7e-24  Score=183.76  Aligned_cols=154  Identities=20%  Similarity=0.328  Sum_probs=128.2

Q ss_pred             CcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe-E-------------
Q 045405           76 DVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT-F-------------  141 (240)
Q Consensus        76 ~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~-~-------------  141 (240)
                      ...|| ++.....+-|.|+|+|+++.|.+|.|+++..|||. +++.++||++|+++++++.+++. .             
T Consensus        18 ~sE~G-~~E~wd~~~~qlqcagV~~~r~~I~p~gL~lP~ys-~a~~i~yV~qG~G~~giv~Pgc~et~~~~~~~~~~~~~   95 (245)
T d1od5a1          18 ESEGG-LIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYS-PYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGS   95 (245)
T ss_dssp             EETTE-EEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEEC-SSCEEEEEEECEEEEEECCTTCCCCEEECC--------
T ss_pred             cccCC-eEEeCCCCCHHHhhcCceeEEEEEcCCcccccccc-CCCeEEEEEeCEEEEEEEeCCChhhhcchhhccccccc
Confidence            45577 55555677899999999999999999999999985 79999999999999999987531 1             


Q ss_pred             -----------EEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCC--------CCceecc---------------
Q 045405          142 -----------FSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQN--------PGVSDSI---------------  187 (240)
Q Consensus       142 -----------~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~--------Pg~~~~~---------------  187 (240)
                                 ....|++|||+++|+|++||++|.|+++++++++++..|        +..+.++               
T Consensus        96 ~~~~~~~d~~qk~~rl~~GDVi~iPAG~~~w~yNdgn~~Lv~v~~~d~~N~~NQLd~~~r~F~laG~~~~~~~~~~~~q~  175 (245)
T d1od5a1          96 RSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQ  175 (245)
T ss_dssp             -------EEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESSSCCCCSCTTTTC---
T ss_pred             ccccccccceeeeecccCCCEEEECCCceEEEEeCCCCcEEEEEEEcccCcccccCCcceeEEecCCcccccchhcccch
Confidence                       124699999999999999999999999999999887544        2333333               


Q ss_pred             --------------------chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhc-CCCceEEecCCeee
Q 045405          188 --------------------GTLFDTTPPVPNEVLTKSFRVGDDVINTIRAAR-AQSSWINILDGRSI  234 (240)
Q Consensus       188 --------------------~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~-~~~~~i~~~~~~~~  234 (240)
                                          .++|+   +|++++|++||+++.++++||+... ....+|++.++.++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~nif~---gF~~~~La~Af~v~~e~~~klq~~~~~rG~IVrv~~~l~~  240 (245)
T d1od5a1         176 QQKSHGGRKQGQHQQQEEEGGSVLS---GFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSV  240 (245)
T ss_dssp             ------------------CCCCTTT---TSCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEECSSCCCC
T ss_pred             hhhhcccccccccccccccCCCeee---cCCHHHHHHHHCCCHHHHHHHhCcccCCCcEEEEcCCccc
Confidence                                27999   8999999999999999999999644 44559999888764

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.90  E-value=1.9e-23  Score=175.36  Aligned_cols=153  Identities=12%  Similarity=0.057  Sum_probs=121.3

Q ss_pred             CcCCceEEEecc--cCCCCCCcc-ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEE-----EEEEC
Q 045405           76 DVFKRAVTFGDV--FGFPAVNTQ-GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFF-----SKVLT  147 (240)
Q Consensus        76 ~~~G~~v~~~~~--~~~P~l~~~-gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~-----~~~l~  147 (240)
                      ...+|+++++..  ...+.|+++ ++++.++++.|+++..|||+ +|++++||++|++++++++++++..     ...++
T Consensus        17 ~~e~G~i~~l~~f~~~~~~l~~l~~~~v~~~~i~P~~l~lP~~~-nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~~~~l~   95 (200)
T d2phla1          17 KNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQA-DAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPI   95 (200)
T ss_dssp             EETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEE-SEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTT
T ss_pred             ECCCccEEEeccccccchhhhcccceEEEEEEecCCceeeeecC-CCCEEEEEEeeeEEEEEEECCCCceeehhhccCcc
Confidence            455666887754  456677765 58999999999999999986 7999999999999999999987532     12689


Q ss_pred             CCCEEEeCCCCeEEEEecC-CCCEEEEEEEeCC---CCCceecc-----chhhcCCCCCCHHHHHhhcCCCHHHHHHHHh
Q 045405          148 PGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQ---NPGVSDSI-----GTLFDTTPPVPNEVLTKSFRVGDDVINTIRA  218 (240)
Q Consensus       148 ~GDv~v~P~G~~H~~~N~G-~~~a~~i~~~~s~---~Pg~~~~~-----~~lf~s~~~~p~~vla~af~v~~~~v~~l~~  218 (240)
                      +||++++|+|.+||++|.+ +++++++.++++.   ++..+.++     .++|+   +|++++|++||+++.+++++|+.
T Consensus        96 ~GDv~~iPaG~~~~~~n~~~~~~l~~~~l~~~~n~~~~~~f~lag~~~~~svl~---~f~~evLa~aF~v~~e~~~kl~~  172 (200)
T d2phla1          96 FSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQ---EFSKHILEASFNSKFEEINRVLF  172 (200)
T ss_dssp             SCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEECCCBTTBCCGGG---GSCHHHHHHHHTSCHHHHHHHHT
T ss_pred             CCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccceeccccccccHhH---cCCHHHHHHHcCCCHHHHHHHHh
Confidence            9999999999999999987 4688888776433   33333333     37898   89999999999999999999974


Q ss_pred             h---cCCCceEEecCCe
Q 045405          219 A---RAQSSWINILDGR  232 (240)
Q Consensus       219 ~---~~~~~~i~~~~~~  232 (240)
                      .   +....+|++.+.|
T Consensus       173 ~~~~q~~g~Iv~~~~eq  189 (200)
T d2phla1         173 EEEGQQEGVIVNIDSEQ  189 (200)
T ss_dssp             CSTTCBSSSEEECCTTT
T ss_pred             ccccccCCceEEcCHHH
Confidence            3   3345588876654

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=99.89  E-value=4.9e-23  Score=176.77  Aligned_cols=154  Identities=16%  Similarity=0.255  Sum_probs=128.1

Q ss_pred             CcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCC----------------
Q 045405           76 DVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN----------------  139 (240)
Q Consensus        76 ~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g----------------  139 (240)
                      ...|| ++.....+-+.|+|+|+++.|.+|.|+++..|||. +|+.++||++|+++++++.+++                
T Consensus        18 ~sE~G-~~E~~d~~~~qlqcagV~~~r~~I~p~gL~lP~y~-~a~~i~yV~qG~G~~g~v~pgc~et~~~~~~~~~~~~~   95 (239)
T d1fxza1          18 ESEGG-LIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYT-NGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQS   95 (239)
T ss_dssp             EETTE-EEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEEE-SSCEEEEEEECCEEEEEECTTCCCC-------------
T ss_pred             ccCCc-eEEecCCCChhhhhccchhheeeeccCceecceec-CCCeEEEEEeCEEEEEEecCCChhhhcccccccccccc
Confidence            45677 55566677799999999999999999999999985 8999999999999999997643                


Q ss_pred             ------eEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCC--------CCceecc------------------
Q 045405          140 ------TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQN--------PGVSDSI------------------  187 (240)
Q Consensus       140 ------~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~--------Pg~~~~~------------------  187 (240)
                            +.....|++|||+++|+|++||++|.|+++++++++++..|        |..+.++                  
T Consensus        96 ~~~~d~~qk~~~lr~GDVi~iPAG~~~w~~N~gn~~Lv~v~~~d~~n~~NQLd~~~r~F~laG~~~~e~~~~~~~~~~~~  175 (239)
T d1fxza1          96 SRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQ  175 (239)
T ss_dssp             -----CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTHHHHC------
T ss_pred             cccchhhhhhhccccCCEEEecCCceEEEEeCCCCcEEEEEEeccccccccccccceeeeccCCcccccccccccccccc
Confidence                  11246999999999999999999999999999999986544        2233333                  


Q ss_pred             --------------chhhcCCCCCCHHHHHhhcCCCHHHHHHHHhhcC---CCceEEecCCeee
Q 045405          188 --------------GTLFDTTPPVPNEVLTKSFRVGDDVINTIRAARA---QSSWINILDGRSI  234 (240)
Q Consensus       188 --------------~~lf~s~~~~p~~vla~af~v~~~~v~~l~~~~~---~~~~i~~~~~~~~  234 (240)
                                    .++|+   +|+.++|++||+++.++++||+..+.   ...+|++.++.++
T Consensus       176 ~~~~~~~~~~~~~~~ni~~---gFs~~~La~Afnv~~e~~~klq~~~~~~~rG~IVrv~~~l~~  236 (239)
T d1fxza1         176 SQKGKHQQEEENEGGSILS---GFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSV  236 (239)
T ss_dssp             -------------CCCGGG---GSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEECSSCCCC
T ss_pred             cccccccccccccCCCccc---ccCHHHHHHHHCcCHHHHHHHhcccccccCCCEEEEcCCccc
Confidence                          27999   89999999999999999999997652   4569999998775

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.60  E-value=3.5e-15  Score=113.35  Aligned_cols=81  Identities=20%  Similarity=0.221  Sum_probs=70.7

Q ss_pred             CCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCE
Q 045405           91 PAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPA  170 (240)
Q Consensus        91 P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a  170 (240)
                      ..+.+....+.+++++||+..++|+|++.+|++||++|++++.+   +++  ...+++||++++|+|..|++.|.|++++
T Consensus        32 ~~~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~g~~H~~~N~g~~~~  106 (115)
T d1o4ta_          32 EAMHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NGK--DVPIKAGDVCFTDSGESHSIENTGNTDL  106 (115)
T ss_dssp             TTTTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEECTTCEEEEECCSSSCE
T ss_pred             cccCCccEEEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEE---cCe--eEEeeccEEEEECCCCeEEEEECCCCCE
Confidence            33444456678999999999999999888899999999999886   356  6799999999999999999999999999


Q ss_pred             EEEEEE
Q 045405          171 TFIPIF  176 (240)
Q Consensus       171 ~~i~~~  176 (240)
                      +++++.
T Consensus       107 ~~l~I~  112 (115)
T d1o4ta_         107 EFLAVI  112 (115)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            998764

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=1.4e-14  Score=107.35  Aligned_cols=77  Identities=19%  Similarity=0.229  Sum_probs=69.9

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      -++.+..+.++||+..++|+|++.+|++||++|++++.+   +++  +..+++||++++|+|..|++.|.|+++++++.+
T Consensus        26 ~~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v  100 (105)
T d1v70a_          26 ERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE--EALLAPGMAAFAPAGAPHGVRNESASPALLLVV  100 (105)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTSCEEEECCSSSCEEEEEE
T ss_pred             CCEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEE---eee--EEEecceEEEEeCCCCEEEeEECCCCCEEEEEE
Confidence            367888999999999999999988899999999999887   355  679999999999999999999999999999887


Q ss_pred             Ee
Q 045405          176 FN  177 (240)
Q Consensus       176 ~~  177 (240)
                      +.
T Consensus       101 ~~  102 (105)
T d1v70a_         101 TA  102 (105)
T ss_dssp             EE
T ss_pred             EC
Confidence            74

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.51  E-value=1.1e-13  Score=111.14  Aligned_cols=115  Identities=16%  Similarity=0.114  Sum_probs=86.8

Q ss_pred             ecCCCCC-ccCcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccC----CeE
Q 045405           67 DFSKDPT-TFDVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN----NTF  141 (240)
Q Consensus        67 ~l~~~~~-~~~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~----g~~  141 (240)
                      .++..+. .....|............+++  .+.+.+.+++||+..++|+|+ ..|++||++|++.+.+.+..    ++.
T Consensus        11 ~i~~~~~~~~g~~g~~~~~~~~~~~~g~~--~i~v~~~~l~PG~~~~~H~H~-~~e~~~Vl~G~g~~~i~~~~~~~~~~~   87 (160)
T d1lr5a_          11 DISQMPQSSYGIEGLSHITVAGALNHGMK--EVEVWLQTISPGQRTPIHRHS-CEEVFTVLKGKGTLLMGSSSLKYPGQP   87 (160)
T ss_dssp             EGGGSCCBCTTCTTEEEEEEECHHHHCCS--SEEEEEEEECTTCBCCEEEES-SCEEEEEEECCEEEEECCSSSSSCCSC
T ss_pred             chhhCcccccCCCCceEEEeecccCCCcc--EEEEEEEEECCCccccceecc-ccEEEEEEeeeEEEEECCccccccccc
Confidence            5554332 223455554555555555666  689999999999999999995 69999999999999886532    122


Q ss_pred             EEEEECCCCEEEeCCCCeEEEEecCC-CCEEEEEEEeCCCCCce
Q 045405          142 FSKVLTPGKVFLIPRALVHFQLNVGN-EPATFIPIFNTQNPGVS  184 (240)
Q Consensus       142 ~~~~l~~GDv~v~P~G~~H~~~N~G~-~~a~~i~~~~s~~Pg~~  184 (240)
                      ..+.+++||++++|+|.+|.+.|.|+ +++.++++++.+....+
T Consensus        88 ~~~~l~~Gd~~~iP~~~~H~~~N~g~~E~l~~l~i~~~~p~~~~  131 (160)
T d1lr5a_          88 QEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIF  131 (160)
T ss_dssp             EEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEESSSCCEE
T ss_pred             eEEEecCCCEEEeCCCCcEEEEECCCCCCEEEEEEECCCCceEE
Confidence            47899999999999999999999996 79999887764443333

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.48  E-value=6.9e-14  Score=105.27  Aligned_cols=80  Identities=18%  Similarity=0.255  Sum_probs=69.0

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      .+.+.++.++||...++|+|+ .+|++||++|++.+.+.+.  +  ...+++||++++|+|..|++.|.|++++.++++.
T Consensus        25 ~~~v~~~~l~pG~~~p~H~H~-~~e~~~Vl~G~~~~~v~~~--e--~~~v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~v~   99 (108)
T d2b8ma1          25 HVQINHIVLPRGEQMPKHYSN-SYVHLIIIKGEMTLTLEDQ--E--PHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVK   99 (108)
T ss_dssp             SCEEEEEEEETTCBCCCEECS-SCEEEEEEESEEEEEETTS--C--CEEEETTCEEEECTTCEEEEECCSSSEEEEEEEE
T ss_pred             CEEEEEEEECCCCcChhhccc-ccEEEEEEeeeEEEEEecc--c--EEEeecceEeeccCCceEEEEcCCCCcEEEEEEE
Confidence            578999999999999999996 6899999999999987431  2  3589999999999999999999999999988754


Q ss_pred             eCCCCC
Q 045405          177 NTQNPG  182 (240)
Q Consensus       177 ~s~~Pg  182 (240)
                       ++.|.
T Consensus       100 -~P~p~  104 (108)
T d2b8ma1         100 -APHPK  104 (108)
T ss_dssp             -CSCGG
T ss_pred             -CCCCc
Confidence             55554

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.48  E-value=1.3e-13  Score=102.00  Aligned_cols=80  Identities=20%  Similarity=0.144  Sum_probs=67.2

Q ss_pred             CCCCCccceEEEEEEEcCCccc--CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405           90 FPAVNTQGVALFRIDLDVGGIN--PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus        90 ~P~l~~~gls~~~v~l~pGg~~--~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~  167 (240)
                      +|.....++.+.+++++||+..  ++|+| ++.|++||++|++++.+   +++  .+.|++||.+.+|.+..|++.|.|+
T Consensus        14 ~p~~~~~~~e~~~~~l~pg~~~~~~~H~h-~~~E~~~Vl~G~~~~~~---~~~--~~~l~~GD~~~~~~~~~H~~~n~~~   87 (99)
T d1y9qa2          14 FPYAADTGLEIFEITLLDHHQQMSSPHAL-GVIEYIHVLEGIMKVFF---DEQ--WHELQQGEHIRFFSDQPHGYAAVTE   87 (99)
T ss_dssp             EEEETTTTEEEEEEEECTTCEEEECCCST-TCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEEECSSSEEEEESSS
T ss_pred             ecCCCcCCEEEEEEEEeCCcEeccccccC-CcEEEEEEEcCceEEEe---cce--EEEecCCCEEEECCCCeEEEEeCCc
Confidence            3444555799999999999854  77888 56899999999999987   355  7899999999999999999999999


Q ss_pred             CCEEEEEE
Q 045405          168 EPATFIPI  175 (240)
Q Consensus       168 ~~a~~i~~  175 (240)
                      +++.++.+
T Consensus        88 ~~~~~~vi   95 (99)
T d1y9qa2          88 KAVFQNIV   95 (99)
T ss_dssp             CEEEEEEE
T ss_pred             cCEEEEEE
Confidence            98755443

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=1.1e-13  Score=104.57  Aligned_cols=75  Identities=16%  Similarity=0.250  Sum_probs=68.0

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ++.+..++++||+..++|+|+. .|++||++|++.+.+   +++  .+.+++||++++|+|..|++.|.|++++++++++
T Consensus        35 ~~~~~~~~i~pG~~~~~H~H~~-~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~n~~~~~~~~l~ii  108 (114)
T d1vj2a_          35 NFVMRLFTVEPGGLIDRHSHPW-EHEIFVLKGKLTVLK---EQG--EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLI  108 (114)
T ss_dssp             SEEEEEEEEEEEEEEEEECCSS-CEEEEEEESEEEEEC---SSC--EEEEETTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             ceEEEEEEECCCCCCCceECCC-cEEEEEEEceeEEEE---eee--eeEEecCeEEEEcCCCeEEEEeCCCCCEEEEEEE
Confidence            5778899999999999999975 899999999999886   355  6899999999999999999999999999999987


Q ss_pred             e
Q 045405          177 N  177 (240)
Q Consensus       177 ~  177 (240)
                      .
T Consensus       109 p  109 (114)
T d1vj2a_         109 P  109 (114)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=3.6e-12  Score=99.51  Aligned_cols=81  Identities=25%  Similarity=0.369  Sum_probs=70.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      .+.+.+++++||+..++|+|+. .|++||++|+++++..  +++  ...+++||++++|+|..||..|.+++++..|++.
T Consensus        34 ~~~~~~vtf~PG~~~~~H~H~~-~q~~~Vl~G~~~~~~~--g~~--~~~~~~Gd~v~ippg~~H~~~a~~~~~~~~lai~  108 (134)
T d2f4pa1          34 NTQVYDVVFEPGARTHWHSHPG-GQILIVTRGKGFYQER--GKP--ARILKKGDVVEIPPNVVHWHGAAPDEELVHIGIS  108 (134)
T ss_dssp             SCEEEEEEECTTCEECSEECTT-CEEEEEEEEEEEEEET--TSC--CEEEETTCEEEECTTCCEEEEEBTTBCEEEEEEE
T ss_pred             eeEEEEEEECCCCcCccccCCC-CEEEEEEeCEEEEEEC--Ccc--eEEEcCCCeEEECCCCceECccCCCCcEEEEEEE
Confidence            4889999999999999999986 8999999999998763  233  4689999999999999999999999999999887


Q ss_pred             eCCCCC
Q 045405          177 NTQNPG  182 (240)
Q Consensus       177 ~s~~Pg  182 (240)
                      ...+.+
T Consensus       109 ~~~~~~  114 (134)
T d2f4pa1         109 TQVHLG  114 (134)
T ss_dssp             CCGGGC
T ss_pred             ecCCCC
Confidence            654443

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.32  E-value=1.5e-11  Score=101.23  Aligned_cols=82  Identities=23%  Similarity=0.339  Sum_probs=71.1

Q ss_pred             ceEEEEEEEcCCccc------CCccCC--CCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCC
Q 045405           97 GVALFRIDLDVGGIN------PPHTHP--RGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNE  168 (240)
Q Consensus        97 gls~~~v~l~pGg~~------~pH~Hp--~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~  168 (240)
                      ++.+....+.||...      ..|+|+  +..|++||++|++.+.+.+.++......+++||++++|+|..|...|+|++
T Consensus        66 ~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g~~H~~~N~Gde  145 (190)
T d1x82a_          66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDE  145 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSSS
T ss_pred             CeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecceeEEeEECCCC
Confidence            688889999999754      347775  457999999999999998776655578999999999999999999999999


Q ss_pred             CEEEEEEEeC
Q 045405          169 PATFIPIFNT  178 (240)
Q Consensus       169 ~a~~i~~~~s  178 (240)
                      ++++++++.+
T Consensus       146 ~L~~l~v~~~  155 (190)
T d1x82a_         146 PFIFLAIYPA  155 (190)
T ss_dssp             CEEEEEEEET
T ss_pred             CEEEEEEECC
Confidence            9999998864

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.23  E-value=1.8e-11  Score=91.97  Aligned_cols=68  Identities=16%  Similarity=0.257  Sum_probs=59.7

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCC
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEP  169 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~  169 (240)
                      .++.+..+.++||...++|+|+. +|++||++|++.+.+   +|+  .+.+++||++++|+|..|.++|.++..
T Consensus        35 ~~~~i~~~~~~~G~~~~~H~h~~-~~~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip~~~~H~~~a~~~~~  102 (112)
T d1yhfa1          35 QDLGITVFSLDKGQEIGRHSSPG-DAMVTILSGLAEITI---DQE--TYRVAEGQTIVMPAGIPHALYAVEAFQ  102 (112)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSS-EEEEEEEESEEEEEE---TTE--EEEEETTCEEEECTTSCEEEEESSCEE
T ss_pred             CCcEEEEEEECCCCCcceEECCC-CEEEEEEeCEEEEEE---ccE--EEEecCCEEEEcCCCCeEEeEECCCcE
Confidence            36778889999999999999985 999999999999987   356  679999999999999999999975433

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=99.19  E-value=5.3e-11  Score=105.93  Aligned_cols=82  Identities=17%  Similarity=0.186  Sum_probs=69.5

Q ss_pred             ceEEEEEEEcCCcc--cCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405           97 GVALFRIDLDVGGI--NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus        97 gls~~~v~l~pGg~--~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      .+++.++.++||+.  .+||||.++.|++||++|++++.+.+.++.....++++||++++|+|..|.+.|.++ +..++.
T Consensus        45 ~~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~~~l~~GD~~~~P~g~~H~~~n~~~-~~~~l~  123 (348)
T d1juha_          45 AFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDP-DTEMTG  123 (348)
T ss_dssp             SCEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECST-TEEEEE
T ss_pred             eEEEEEEeeCCCCCCCCCccccccceEEEEEEeeEEEEEEeccCCceEEEEeCCCCEEEECCCCeEeeEeCCC-CcEEEE
Confidence            37899999999985  578999988999999999999998876544347899999999999999999999986 567777


Q ss_pred             EEeCC
Q 045405          175 IFNTQ  179 (240)
Q Consensus       175 ~~~s~  179 (240)
                      ++...
T Consensus       124 v~~pg  128 (348)
T d1juha_         124 VIVPG  128 (348)
T ss_dssp             EEESS
T ss_pred             EECCC
Confidence            77643

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.18  E-value=4.4e-10  Score=95.42  Aligned_cols=79  Identities=10%  Similarity=0.089  Sum_probs=68.1

Q ss_pred             CccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           94 NTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        94 ~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      ....+.+..++++||+..+.|.|...+|++||++|++++.+   +++  ++.+++||++++|++.+|++.|.|++++.++
T Consensus       161 ~~~~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i---~~~--~~~v~~GD~i~~~~~~~H~~~n~g~~~~~~l  235 (245)
T d1sfna_         161 PAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EEN--YYPVTAGDIIWMGAHCPQWYGALGRNWSKYL  235 (245)
T ss_dssp             TTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEEESSSCEEEE
T ss_pred             cccceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEE---CCE--EEEecCCCEEEECCCCCEeeEeCCCCCEEEE
Confidence            33468899999999999888764467999999999999887   356  6899999999999999999999999999988


Q ss_pred             EEEe
Q 045405          174 PIFN  177 (240)
Q Consensus       174 ~~~~  177 (240)
                      ..-+
T Consensus       236 ~~k~  239 (245)
T d1sfna_         236 LYKD  239 (245)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            6544

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=99.17  E-value=2e-10  Score=87.83  Aligned_cols=77  Identities=17%  Similarity=0.248  Sum_probs=63.2

Q ss_pred             ceEEEEEEEcCCcccCC---ccCCCCCeEEEEeeCEEEEEEEcc-CCeEEEEEECCCCEEEeCCCCeEEEEec-CCCCEE
Q 045405           97 GVALFRIDLDVGGINPP---HTHPRGTEAGIVTRGTVLVGLVTT-NNTFFSKVLTPGKVFLIPRALVHFQLNV-GNEPAT  171 (240)
Q Consensus        97 gls~~~v~l~pGg~~~p---H~Hp~a~Ei~yVl~G~~~v~~v~~-~g~~~~~~l~~GDv~v~P~G~~H~~~N~-G~~~a~  171 (240)
                      .+...++++.|++....   |-|+ ..|++||++|++.+.+.+. +++  +.+|++||.+++|++.+|.+.|. |++++.
T Consensus        40 ~~~~~~i~v~~~~~~~~~~~~~H~-~eE~~yVl~G~~~~~~g~~~~~~--~~~l~~GDsi~~~~~~pH~~~n~~g~~~a~  116 (122)
T d2bnma2          40 SLVPLVVDVLTDNPDDAKFNSGHA-GNEFLFVLEGEIHMKWGDKENPK--EALLPTGASMFVEEHVPHAFTAAKGTGSAK  116 (122)
T ss_dssp             TCEEEEEEECCCCGGGCCCCCCCS-SCEEEEEEESCEEEEESCTTSCE--EEEECTTCEEEECTTCCEEEEESTTSCCEE
T ss_pred             ccEeEEEEEeCCCCCccccCCCcc-cEEEEEEEEEEEEEEEecccCCE--EEEEccCcEEEeCCCCCEEEEcCCCCccEE
Confidence            57788999999886432   3364 5999999999999998653 245  67999999999999999999996 788998


Q ss_pred             EEEEE
Q 045405          172 FIPIF  176 (240)
Q Consensus       172 ~i~~~  176 (240)
                      ++++.
T Consensus       117 ~l~Vt  121 (122)
T d2bnma2         117 LIAVN  121 (122)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88763

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=3.6e-11  Score=105.31  Aligned_cols=76  Identities=18%  Similarity=0.240  Sum_probs=68.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ++.+....|+||+..++|+|+ .+|+.||++|++.+..++  ++  ...+++||++++|+|..|...|.|++++.++.++
T Consensus        53 ~l~~~~~~l~PG~~~~~H~H~-~~e~~~vl~G~g~~t~~~--~~--~~~~~~Gd~~~~P~~~~H~~~n~g~e~~~~l~~~  127 (308)
T d2d40a1          53 TLYAGLQLIMPGEVAPSHRHN-QSALRFIVEGKGAFTAVD--GE--RTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGL  127 (308)
T ss_dssp             SCEEEEEEECTTCEEEEEEES-SCEEEEEEECSSCEEEET--TE--EEECCTTCEEEECTTSCEEEECCSSSCEEEEEEE
T ss_pred             cceeeeEEECCCCccccccCc-hhheEEEEEeeEEEEEec--CE--EEEecCCCEEEeCCCceEEeEECCCCCEEEEEEe
Confidence            578888999999999999996 589999999999887764  45  5789999999999999999999999999999988


Q ss_pred             e
Q 045405          177 N  177 (240)
Q Consensus       177 ~  177 (240)
                      +
T Consensus       128 d  128 (308)
T d2d40a1         128 D  128 (308)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.15  E-value=1.7e-10  Score=99.68  Aligned_cols=76  Identities=14%  Similarity=0.199  Sum_probs=67.1

Q ss_pred             cceEEEEEEEcCCcccC-CccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405           96 QGVALFRIDLDVGGINP-PHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~-pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      ..+.+..++++||+..+ +|+|+. +|++||++|++++.+   +++  ++.+++||++++|++.+|+++|.|+++++++.
T Consensus       187 ~d~~~~i~~~~PG~~~~~~h~H~~-ee~~~vl~G~~~~~~---~~~--~~~v~~GD~i~~~~~~ph~~~n~g~~p~~yl~  260 (273)
T d1sq4a_         187 HDMHVNIVNFEPGGVIPFAETHVM-EHGLYVLEGKAVYRL---NQD--WVEVEAGDFMWLRAFCPQACYSGGPGRFRYLL  260 (273)
T ss_dssp             CSEEEEEEEECSSSEESCCCCCSE-EEEEEEEECEEEEEE---TTE--EEEEETTCEEEEEESCCEEEECCSSSCEEEEE
T ss_pred             cceEEEEEEEccCCcccccccccc-ceEEEEEccEEEEEE---CCE--EEEecCCCEEEECCCCCEEeEeCCCCCEEEEE
Confidence            35889999999998654 799964 899999999999987   456  78999999999999999999999999999887


Q ss_pred             EEe
Q 045405          175 IFN  177 (240)
Q Consensus       175 ~~~  177 (240)
                      ..+
T Consensus       261 ~kd  263 (273)
T d1sq4a_         261 YKD  263 (273)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.15  E-value=1.9e-10  Score=101.19  Aligned_cols=76  Identities=16%  Similarity=0.138  Sum_probs=67.0

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      .+++..++++||+..++|||+...|++||++|++++.+   +++  +..+++||++++|+|..|++.|.+ +++.++.++
T Consensus       213 ~~~~~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~~~v---~~~--~~~~~~Gd~~~vP~g~~H~~~~~~-~~~~~l~~~  286 (330)
T d1y3ta1         213 QFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT---DGQ--EIQLNPGDFLHVPANTVHSYRLDS-HYTKMVGVL  286 (330)
T ss_dssp             SCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECS-SSEEEEEEE
T ss_pred             cEEEEEEEECCCCccCccCcCCccEEEEEEecEEEEEE---CCE--EEEeCCCCEEEECcCCcEEeEeCC-CCeEEEEEE
Confidence            47888899999999999999888999999999999977   355  678999999999999999999976 578888777


Q ss_pred             eC
Q 045405          177 NT  178 (240)
Q Consensus       177 ~s  178 (240)
                      ..
T Consensus       287 ~p  288 (330)
T d1y3ta1         287 VP  288 (330)
T ss_dssp             ES
T ss_pred             CC
Confidence            53

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.14  E-value=2.2e-10  Score=97.54  Aligned_cols=80  Identities=13%  Similarity=0.208  Sum_probs=65.8

Q ss_pred             CCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC-C
Q 045405           90 FPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN-E  168 (240)
Q Consensus        90 ~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~-~  168 (240)
                      +|.-....+.+..+.++||+..+.|+|...+|++||++|++.+.+   +++  ++.+++||++++|++.+|+..|.|. +
T Consensus       160 ~p~~~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~~~---~~~--~~~~~~GD~i~~~~~~pH~~~n~G~~~  234 (250)
T d1sefa_         160 LPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL---DNE--WYPVEKGDYIFMSAYVPQAAYAVGREE  234 (250)
T ss_dssp             SCSSTTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE---TTE--EEEEETTCEEEECTTCCEEEEEECSSS
T ss_pred             cCccccccEEEEEEEECCCCccCccCccCceEEEEEeCCEEEEEE---CCE--EEEecCCCEEEECCCCCEEeEcCCCCC
Confidence            344444578999999999999886444466999999999999887   456  7899999999999999999999994 6


Q ss_pred             CEEEEE
Q 045405          169 PATFIP  174 (240)
Q Consensus       169 ~a~~i~  174 (240)
                      +++++.
T Consensus       235 ~~~~l~  240 (250)
T d1sefa_         235 PLMYVY  240 (250)
T ss_dssp             CEEEEE
T ss_pred             cEEEEE
Confidence            666654

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.14  E-value=1.3e-10  Score=102.19  Aligned_cols=75  Identities=17%  Similarity=0.177  Sum_probs=66.0

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      .+++.++.++||+..++|+|+.++|++||++|++++.+   +|+  +..+++||++++|+|..|.+.|.|++ +.++.++
T Consensus        41 ~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~~p~~~~H~~~n~~~~-~~~l~~~  114 (330)
T d1y3ta1          41 LFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL---DGE--RYLLISGDYANIPAGTPHSYRMQSHR-TRLVSYT  114 (330)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECSTT-EEEEEEE
T ss_pred             cEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEE---CCE--EEEEcCCCEEEeCCCCeEEEEEcCCC-eEEEEEE
Confidence            58999999999999999999888999999999999986   356  67999999999999999999999874 5556555


Q ss_pred             e
Q 045405          177 N  177 (240)
Q Consensus       177 ~  177 (240)
                      .
T Consensus       115 ~  115 (330)
T d1y3ta1         115 M  115 (330)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=2e-10  Score=97.78  Aligned_cols=81  Identities=14%  Similarity=0.120  Sum_probs=62.9

Q ss_pred             CCCCccceEEEEEEEcCCcccC-CccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCC
Q 045405           91 PAVNTQGVALFRIDLDVGGINP-PHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEP  169 (240)
Q Consensus        91 P~l~~~gls~~~v~l~pGg~~~-pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~  169 (240)
                      |.-...++.+..++++||+..+ +|.|. .+|++||++|++++.+   +++  .+.+++||++++|+|.+|+..|.|.++
T Consensus       164 p~~~~~~~~~~~~~~~PG~~~~~~h~h~-~ee~~~vl~G~g~~~i---~~~--~~~~~~GD~i~~~~~~ph~~~~~g~~~  237 (253)
T d1rc6a_         164 PKELGFDMNMHILSFAPGASHGYIETHV-QEHGAYILSGQGVYNL---DNN--WIPVKKGDYIFMGAYSLQAGYGVGRGE  237 (253)
T ss_dssp             CCSTTCSEEEEEEEECTTCCBEEEEEES-SCEEEEEEESEEEEES---SSC--EEEEETTCEEEECSSEEEEEEEC----
T ss_pred             CccccccEEEEEEEECCCceEeEEEeCC-ceEEEEEeCCEEEEEE---CCE--EEEecCCCEEEECCCCCEeeeeCCCCC
Confidence            4334447899999999999876 68884 5899999999999887   355  689999999999999999999999766


Q ss_pred             EEEEEEEe
Q 045405          170 ATFIPIFN  177 (240)
Q Consensus       170 a~~i~~~~  177 (240)
                      +..+..+.
T Consensus       238 ~~~~~~~~  245 (253)
T d1rc6a_         238 AFSYIYSK  245 (253)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEEE
Confidence            54444444

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.06  E-value=2.5e-10  Score=97.21  Aligned_cols=82  Identities=11%  Similarity=0.058  Sum_probs=67.6

Q ss_pred             CCCCCCccceEEEEEEEcCCccc-CCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405           89 GFPAVNTQGVALFRIDLDVGGIN-PPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus        89 ~~P~l~~~gls~~~v~l~pGg~~-~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~  167 (240)
                      --|.+. .++++.+++++||+-. .+|.|++.+|++||++|++++.+.   |+  .+.|++||.+++|+|..|.+.|.|+
T Consensus        40 ~sp~~G-a~f~~~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G~~~~~~~---~~--~~~l~~Gd~~~~p~~~~H~~~N~~~  113 (250)
T d1sefa_          40 GSPKLG-ATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDG---QE--THELEAGGYAYFTPEMKMYLANAQE  113 (250)
T ss_dssp             SCGGGT-CSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECS---SC--EEEEETTEEEEECTTSCCEEEESSS
T ss_pred             cCcccC-CcEEEEEEEEcCCcccCCCCCCCCcEEEEEEEeeEEEEEEC---CE--EEEEcCCCEEEEcCCCcEEEEECCC
Confidence            344443 3689999999999964 445555668899999999999873   45  6789999999999999999999999


Q ss_pred             CCEEEEEEE
Q 045405          168 EPATFIPIF  176 (240)
Q Consensus       168 ~~a~~i~~~  176 (240)
                      +++.++.+-
T Consensus       114 ~~~~~l~v~  122 (250)
T d1sefa_         114 ADTEVFLYK  122 (250)
T ss_dssp             SCEEEEEEE
T ss_pred             CCEEEEEEE
Confidence            999998764

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=99.04  E-value=4.3e-10  Score=99.92  Aligned_cols=73  Identities=16%  Similarity=0.153  Sum_probs=64.0

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      .+++..+.+.||+...||||.+++|++||++|++++.+.+  ++  +..|++||++++|+|..|.+.|.+.....++
T Consensus       248 ~~~~~~~~~~pg~~~~~~~~~~~~e~~~vleG~~~~~i~~--~~--~~~l~~GD~~~vP~g~~h~~~~~~~~~~~~~  320 (348)
T d1juha_         248 TLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGD--YA--ATELGSGDVAFIPGGVEFKYYSEAYFSKVLF  320 (348)
T ss_dssp             EEEEEEECCCCTTSCCCCBCCSSCEEEEEEESCEEEEETT--SC--CEEECTTCEEEECTTCCEEEEESSSSEEEEE
T ss_pred             ceeEEEEEecCCCCCCCcccCCCCEEEEEEeceEEEEeCC--cc--eEEecCCCEEEECCCCcEEEEeCCCCcEEEE
Confidence            5788899999999999999999999999999999998843  33  4689999999999999999999987764443

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.00  E-value=1.4e-09  Score=93.85  Aligned_cols=95  Identities=17%  Similarity=0.153  Sum_probs=74.0

Q ss_pred             CCceEEEecccCCCCCCc-cceEEEEEEEcCCcc-cCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeC
Q 045405           78 FKRAVTFGDVFGFPAVNT-QGVALFRIDLDVGGI-NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIP  155 (240)
Q Consensus        78 ~G~~v~~~~~~~~P~l~~-~gls~~~v~l~pGg~-~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P  155 (240)
                      .|+.-+.+....-|.... ..+++..++++|||. ..||.|++++|++||++|++++.+   +|+  ++.|++||.+++|
T Consensus        45 P~w~~~~~~vl~~p~~G~a~~F~~y~vev~PGg~s~~p~~~~~~Ee~~yVl~G~~~l~~---~g~--~~~L~~Gd~~y~P  119 (273)
T d1sq4a_          45 PFWDNMRMWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTL---QGQ--VHAMQPGGYAFIP  119 (273)
T ss_dssp             TTCEEEEEEEECCCSSSSCCSCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEE---SSC--EEEECTTEEEEEC
T ss_pred             CCCCCceEEEECCcccCCCcceEEEEEEECCCCccCCCCCCCCcEEEEEEEeCEEEEEE---CCE--EEEecCCCEEEEC
Confidence            333333333334444332 258999999999985 567777788999999999999987   355  6799999999999


Q ss_pred             CCCeEEEEecCCCCEEEEEEEe
Q 045405          156 RALVHFQLNVGNEPATFIPIFN  177 (240)
Q Consensus       156 ~G~~H~~~N~G~~~a~~i~~~~  177 (240)
                      +|..|.+.|.|+++++++.+-.
T Consensus       120 ~g~~h~~~N~g~~~a~~l~i~k  141 (273)
T d1sq4a_         120 PGADYKVRNTTGQHTRFHWIRK  141 (273)
T ss_dssp             TTCCEEEECCSSSCEEEEEEEE
T ss_pred             CCCcEeeeecCCCCEEEEEEEe
Confidence            9999999999999999887653

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.98  E-value=9.2e-10  Score=98.11  Aligned_cols=77  Identities=18%  Similarity=0.213  Sum_probs=68.9

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      .|......|.||...++|+|. +.|+.||++|++.++.++  |+  ...+++||++++|.|..|...|.|++++.++.++
T Consensus        86 ~l~~~~~~l~PGe~~~~H~H~-~~~~~~vi~G~g~~t~v~--g~--~~~~~~GD~~~~P~~~~H~~~n~~d~~~~~l~~~  160 (351)
T d2phda1          86 TMWAGIQYLGPRETAPEHRHS-QNAFRFVVEGEGVWTVVN--GD--PVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGL  160 (351)
T ss_dssp             SCEEEEEEECTTCEEEEEEES-SCEEEEEEECEEEEEEET--TE--EEEEETTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             hhhhheEEECCCCcCCccccc-cceeEEEEECCcEEEEEC--CE--EEEEeCCCEEEeCCCceEEEEEcCCCCEEEEEee
Confidence            577888899999999999995 799999999999877774  55  5689999999999999999999999999999888


Q ss_pred             eC
Q 045405          177 NT  178 (240)
Q Consensus       177 ~s  178 (240)
                      +.
T Consensus       161 d~  162 (351)
T d2phda1         161 DI  162 (351)
T ss_dssp             CH
T ss_pred             cC
Confidence            53

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.98  E-value=8.7e-10  Score=84.57  Aligned_cols=71  Identities=15%  Similarity=0.066  Sum_probs=58.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      .+++....++||.   .|||...+|++||++|++++.+   +|+  .+.|++||++++|+|..|.+.|.+  +++++.++
T Consensus        53 ~~~~~~~~~~~g~---~~~~~~~~E~~~vl~G~~~~~~---~g~--~~~l~~Gd~~~~p~g~~h~~~~~~--~~~~~~v~  122 (128)
T d2pyta1          53 SMAAGFMQWDNAF---FPWTLNYDEIDMVLEGELHVRH---EGE--TMIAKAGDVMFIPKGSSIEFGTPT--SVRFLYVA  122 (128)
T ss_dssp             SSEEEEEEEEEEE---EEEECSSEEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCEEEEEEEE--EEEEEEEE
T ss_pred             ceEEEEEEECCCc---cceeCCccEEEEEEEeEEEEEE---CCE--EEEecCCCEEEECCCCEEEEEeCC--CEEEEEEE
Confidence            4677788888886   3677788999999999999986   366  689999999999999999999975  45666655


Q ss_pred             e
Q 045405          177 N  177 (240)
Q Consensus       177 ~  177 (240)
                      .
T Consensus       123 ~  123 (128)
T d2pyta1         123 W  123 (128)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.96  E-value=4.1e-09  Score=94.06  Aligned_cols=95  Identities=14%  Similarity=0.038  Sum_probs=74.6

Q ss_pred             ccCcCCceEEEecccC-CCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEE
Q 045405           74 TFDVFKRAVTFGDVFG-FPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVF  152 (240)
Q Consensus        74 ~~~~~G~~v~~~~~~~-~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~  152 (240)
                      ..+..|..+...+..+ .+...+  +++....|+||....+|+|+ .+|++||++|++++.+   +++  +..+++||++
T Consensus       233 ~~~~~g~~l~y~nP~tg~~~~~t--i~~~~~~l~pG~~~~~hrH~-~~~v~~v~~G~g~~~i---~g~--~~~~~~GDv~  304 (355)
T d3bu7a1         233 GSPYDGLILRYTNPQTGGHPMLT--MGASMQMLRPGEHTKAHRHT-GNVIYNVAKGQGYSIV---GGK--RFDWSEHDIF  304 (355)
T ss_dssp             CBTTTBEEEEECCTTTSSCSSSS--CEEEEEEECTTCBCCCEEES-SCEEEEEEECCEEEEE---TTE--EEEECTTCEE
T ss_pred             CCCCCceEEEeccccccCCCcce--eeEEEEEECCCCccCCcCcc-CcEEEEEEECcEEEEE---CCE--EEEeeCCCEE
Confidence            3345677777777544 355664  66777789999999999996 5799999999999887   466  6799999999


Q ss_pred             EeCCCCeEEEEecCCCCEEEEEEE
Q 045405          153 LIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus       153 v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      ++|.+..|...|.++++..++..+
T Consensus       305 ~vP~~~~h~~~N~s~~e~~~Lf~~  328 (355)
T d3bu7a1         305 CVPAWTWHEHCNTQERDDACLFSF  328 (355)
T ss_dssp             EECTTCCEEEEECCSSCCEEEEEE
T ss_pred             EeCCCCcEEeecCCCCCcEEEEEe
Confidence            999999999999987654444333

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=3e-09  Score=90.32  Aligned_cols=80  Identities=14%  Similarity=0.107  Sum_probs=66.6

Q ss_pred             CCCCccceEEEEEEEcCCcccCCccCC-CCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCC
Q 045405           91 PAVNTQGVALFRIDLDVGGINPPHTHP-RGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEP  169 (240)
Q Consensus        91 P~l~~~gls~~~v~l~pGg~~~pH~Hp-~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~  169 (240)
                      |.+. .++.+.+++++||+....|+|. +.+|++||++|++++.+   +++  .+.+++||++++|+|..|.+.|.|+++
T Consensus        45 p~~g-~~f~~~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G~~~~~~---~~~--~~~l~~Gd~~~~p~~~~H~~~N~~~~~  118 (253)
T d1rc6a_          45 PKLG-ASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA---EGK--TFALSEGGYLYCPPGSLMTFVNAQAED  118 (253)
T ss_dssp             GGGT-CSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEECTTCCCEEEECSSSC
T ss_pred             cccC-CceEEEEEEECCCcccCCcccCCCcEEEEEEEECEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECCCCC
Confidence            4443 3789999999999876555553 55679999999999986   355  679999999999999999999999999


Q ss_pred             EEEEEEE
Q 045405          170 ATFIPIF  176 (240)
Q Consensus       170 a~~i~~~  176 (240)
                      ++++.+-
T Consensus       119 ~~~l~v~  125 (253)
T d1rc6a_         119 SQIFLYK  125 (253)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9998774

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=2.6e-08  Score=86.71  Aligned_cols=90  Identities=10%  Similarity=0.027  Sum_probs=70.5

Q ss_pred             CcCCceEEEecccCC-CCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEe
Q 045405           76 DVFKRAVTFGDVFGF-PAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLI  154 (240)
Q Consensus        76 ~~~G~~v~~~~~~~~-P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~  154 (240)
                      ...|..+...+.... +...  .+.+....++||....+|+|+ ..|++||++|++++.+   +++  +..+++||++++
T Consensus       201 ~~~g~~v~~~~~~~~~~~~~--t~~~~~~~l~pG~~~~~h~h~-~~~~~~v~~G~g~~~v---~~~--~~~~~~GD~~~v  272 (308)
T d2d40a1         201 EWDGYKMRYVNPVTGGYPMP--SMGAFLQLLPKGFASRVARTT-DSTIYHVVEGSGQVII---GNE--TFSFSAKDIFVV  272 (308)
T ss_dssp             TTTBEEEEECCTTTSSCSSS--SCEEEEEEECTTCBCCCBEES-SCEEEEEEEEEEEEEE---TTE--EEEEETTCEEEE
T ss_pred             CCCceEEEeeccccccCccc--eeEEEEEEccCCCccCCccCC-hheEEEEEeCcEEEEE---CCE--EEEEeCCCEEEe
Confidence            445666776665444 4455  467778889999999999995 5899999999999887   466  578999999999


Q ss_pred             CCCCeEEEEecCCCCEEEEEE
Q 045405          155 PRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus       155 P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      |.+..|...|.++  ..++.+
T Consensus       273 P~~~~h~~~~~~d--~~l~~v  291 (308)
T d2d40a1         273 PTWHGVSFQTTQD--SVLFSF  291 (308)
T ss_dssp             CTTCCEEEEEEEE--EEEEEE
T ss_pred             CCCCeEEEEcCCC--eEEEEE
Confidence            9999999999664  445444

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.74  E-value=3e-08  Score=88.31  Aligned_cols=76  Identities=12%  Similarity=0.090  Sum_probs=65.7

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec-CCCCEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV-GNEPATFIPI  175 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~-G~~~a~~i~~  175 (240)
                      .|.+....|.||...++|+|. ..++.||++|++..+.++  |+  ...+++||++++|.|..|...|. ++++++++.+
T Consensus        84 ~l~~~~q~l~PGe~~~~HrH~-~~~~~~vi~G~g~~t~v~--ge--~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~~  158 (355)
T d3bu7a1          84 WLFSGIQTMKAGERAGAHRHA-ASALRFIMEGSGAYTIVD--GH--KVELGANDFVLTPNGTWHEHGILESGTECIWQDG  158 (355)
T ss_dssp             TBEEEEEEECTTCBCCCEEES-SCEEEEEEECSCEEEEET--TE--EEEECTTCEEEECTTCCEEEEECTTCCCEEEEEE
T ss_pred             hhhhheEeeCCCCcCcccccc-cceeEEEEECCcEEEEEC--CE--EEEeeCCCEEEeCCCceEeeecCCCCCcEEEEEe
Confidence            588889999999999999995 699999999999877764  55  46899999999999999999996 5678888776


Q ss_pred             Ee
Q 045405          176 FN  177 (240)
Q Consensus       176 ~~  177 (240)
                      .+
T Consensus       159 ~D  160 (355)
T d3bu7a1         159 LD  160 (355)
T ss_dssp             EC
T ss_pred             cc
Confidence            64

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.70  E-value=1.5e-08  Score=85.67  Aligned_cols=72  Identities=13%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      .+++..++++||+-.  |.| ..+|++||++|++++.+   +|+  .+.|++||.+++|+|..|.+.|.|++++.++-..
T Consensus        49 ~F~~~~v~~~pGg~~--~~~-~~E~~~~Vl~G~~~~~~---~g~--~~~l~~G~~~~~P~g~~h~~~n~~~~~~~~~~~~  120 (245)
T d1sfna_          49 RFVQFTAEMPAGAQA--TES-VYQRFAFVLSGEVDVAV---GGE--TRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKP  120 (245)
T ss_dssp             SSEEEEEEECTTCEE--ECC-SSEEEEEEEEEEEEEEC---SSC--EEEECTTEEEEECTTCCCEEEEEEEEEEEEEEEC
T ss_pred             ceEEEEEEECCCCCC--CCC-CccEEEEEEECEEEEEE---CCE--EEEecCCCEEEeCCCCcEEEEeCCCccEEEEEee
Confidence            589999999999864  444 45899999999999986   355  6799999999999999999999999888887543

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.69  E-value=1.2e-07  Score=84.10  Aligned_cols=88  Identities=15%  Similarity=0.094  Sum_probs=69.3

Q ss_pred             CCceEEEecccC-CCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCC
Q 045405           78 FKRAVTFGDVFG-FPAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPR  156 (240)
Q Consensus        78 ~G~~v~~~~~~~-~P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~  156 (240)
                      .+..+..++..+ .+.+.+  +++....|+||....+|+|. +.|++||++|++++.+   +++  +..+++||++++|.
T Consensus       244 g~~~l~yvnp~tg~~~~~t--~~~~~~~l~pG~~~~~hrh~-~~~v~~vi~G~g~~~i---~~~--~~~~~~gDvf~vP~  315 (351)
T d2phda1         244 GHAAIRYVNPTTGGDVMPT--LRCEFHRLRAGTETATRNEV-GSTVFQVFEGAGAVVM---NGE--TTKLEKGDMFVVPS  315 (351)
T ss_dssp             TEEEEEEBCTTTSSBSBTT--BEEEEEEECTTCBCCCEEES-SCEEEEEEESCEEEEE---TTE--EEEECTTCEEEECT
T ss_pred             cceeEEEeccccCCCcCCc--ceEEEEEecCCCcCCCcccc-CcEEEEEEeCcEEEEE---CCE--EEEEcCCCEEEeCC
Confidence            345566666544 566665  55666678999999999995 5899999999999987   356  67999999999999


Q ss_pred             CCeEEEEecCCCCEEEEEE
Q 045405          157 ALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus       157 G~~H~~~N~G~~~a~~i~~  175 (240)
                      +..|...|.+  ++.++.+
T Consensus       316 ~~~h~~~n~~--~~~Lf~~  332 (351)
T d2phda1         316 WVPWSLQAET--QFDLFRF  332 (351)
T ss_dssp             TCCEEEEESS--CEEEEEE
T ss_pred             CCcEEEecCC--CeEEEEE
Confidence            9999999954  5666554

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.57  E-value=1.9e-08  Score=81.42  Aligned_cols=69  Identities=22%  Similarity=0.252  Sum_probs=56.6

Q ss_pred             cCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCC
Q 045405          111 NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPG  182 (240)
Q Consensus       111 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg  182 (240)
                      ...|.|+. .|+.||++|++++.+.+. ++.+...+++||++++|+|..||+....+....++-+|.. .+|
T Consensus        93 ~~EH~H~~-dEvr~vv~G~g~f~v~~~-d~~~~v~~~~GDli~vPag~~H~F~~~~~~~~~aiRlF~~-~~g  161 (179)
T d1zrra1          93 LNEHTHGE-DEVRFFVEGAGLFCLHIG-DEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDN-PEG  161 (179)
T ss_dssp             HSCBEESS-CEEEEEEESCCCCCEECS-SCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECC-GGG
T ss_pred             cccccCCC-ceEEEEEeCeEEEEEEcC-CeEEEEEEcCCCEEEeCCCCeEccccCCCCCEEEEEEecC-CCC
Confidence            46899976 999999999999988764 6667788999999999999999997766666777777753 344

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.4e-07  Score=76.13  Aligned_cols=73  Identities=12%  Similarity=0.182  Sum_probs=61.1

Q ss_pred             cCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEEeCCCCCcee
Q 045405          111 NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSD  185 (240)
Q Consensus       111 ~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~  185 (240)
                      ..-|.|+. .|+.||++|++.+.+.+.+++.+...+++||++++|+|..||+.-..+....++-.|. ..|+...
T Consensus        85 ~~EH~H~~-~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~~~~~v~aiRlF~-~~~~W~~  157 (179)
T d1vr3a1          85 FEEHLHLD-EEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFV-GEPVWTP  157 (179)
T ss_dssp             HSCEECSS-CEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTCCEEEEEEES-SSCCCCC
T ss_pred             hhceeCCC-cEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCCCCCCEEEEEEEC-CCCeeeE
Confidence            36899976 9999999999999998877888888999999999999999999876666677776664 4666653

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=98.12  E-value=7.8e-07  Score=69.12  Aligned_cols=76  Identities=16%  Similarity=0.026  Sum_probs=56.9

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      |....+++++||+..++|+|+ +.|.+|||+|++...-.+...   ...+.+|+.++.|+|..|... .+++.++++..+
T Consensus        42 g~~~~l~r~~~G~~~p~H~H~-~~e~~~VL~G~l~~~~g~~~~---g~~~~~g~y~~~Pag~~H~~~-~~~e~~~~~~~~  116 (144)
T d2o1qa1          42 GSWTAIFDCPAGSSFAAHVHV-GPGEYFLTKGKMDVRGGKAAG---GDTAIAPGYGYESANARHDKT-EFPVASEFYMSF  116 (144)
T ss_dssp             TEEEEEEEECTTEEECCEEES-SCEEEEEEEEEEEETTCGGGT---SEEEESSEEEEECTTCEESCC-EEEEEEEEEEEE
T ss_pred             CcEEEEEEeCCCcCcCCCccc-cCEEEEEEEEEEEecCCCcCC---CceEeCCceeEcCCCCeEccc-cCCCCEEEEEEE
Confidence            678899999999999999996 588899999998764321111   136789999999999999632 234556666544


Q ss_pred             e
Q 045405          177 N  177 (240)
Q Consensus       177 ~  177 (240)
                      .
T Consensus       117 ~  117 (144)
T d2o1qa1         117 L  117 (144)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=98.10  E-value=2.8e-05  Score=59.36  Aligned_cols=93  Identities=11%  Similarity=0.036  Sum_probs=66.7

Q ss_pred             CceEEEecccCCCCCCccceEEEE-EEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCC
Q 045405           79 KRAVTFGDVFGFPAVNTQGVALFR-IDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRA  157 (240)
Q Consensus        79 G~~v~~~~~~~~P~l~~~gls~~~-v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G  157 (240)
                      .|.++.....+.-..+-.  .+.. ....+|.++.+|+|...+++++|++|++++.+.+...+....-.+.++.+++|+|
T Consensus        14 RG~l~~i~~~~~~~f~~k--r~~~~~~~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~l~~~~~~l~IPpg   91 (135)
T d2pa7a1          14 RGSLVAIEENKNIPFSIK--RVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPA   91 (135)
T ss_dssp             TEEEEEEETTTTSSSCCC--EEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTT
T ss_pred             CCCEEEEEcccccccccc--eEEEEecCCCCcEEeeeccccccEEEEecccEEEEEEEeccccceeecccCCceeeeCCC
Confidence            445665554443333321  2332 3456788999999999999999999999999987655544444488899999999


Q ss_pred             CeEEEEecCCCCEEEEE
Q 045405          158 LVHFQLNVGNEPATFIP  174 (240)
Q Consensus       158 ~~H~~~N~G~~~a~~i~  174 (240)
                      ..|.+.+.+++ ++++.
T Consensus        92 ~~h~~~~l~~~-s~ll~  107 (135)
T d2pa7a1          92 VWHEMHDFSSD-CVMMV  107 (135)
T ss_dssp             CEEEEECCCTT-CEEEE
T ss_pred             EeeeEEecCCC-cEEEE
Confidence            99999998765 45444

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=1.5e-05  Score=61.53  Aligned_cols=62  Identities=19%  Similarity=0.211  Sum_probs=48.8

Q ss_pred             ccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEE-EecCCCCEEEEE-EEe
Q 045405          110 INPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQ-LNVGNEPATFIP-IFN  177 (240)
Q Consensus       110 ~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~-~N~G~~~a~~i~-~~~  177 (240)
                      +..||-|+. -+++||++|++.+.+   +++  ++.+++||++++|+|..|.. ...+++++.++. -|+
T Consensus        30 ~~Rp~g~~~-Y~l~yv~~G~G~~~i---~~~--~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl~F~   93 (161)
T d2arca_          30 IDRPLGMKG-YILNLTIRGQGVVKN---QGR--EFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFR   93 (161)
T ss_dssp             EEETTCCSS-EEEEEEEEECEEEEE---TTE--EEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEEEC
T ss_pred             EECCCCCCC-EEEEEEEEeEEEEEE---CCE--EEEecCCeEEEEcCCCcEEEEeCCCCCCEEEEEEEEe
Confidence            346899965 899999999999986   466  78999999999999999974 445566766553 354

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=97.57  E-value=0.00067  Score=54.14  Aligned_cols=83  Identities=17%  Similarity=0.144  Sum_probs=67.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEcc--CC-----eEEEEEECCCCEEEeCCC-CeEEEEecC-C
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTT--NN-----TFFSKVLTPGKVFLIPRA-LVHFQLNVG-N  167 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~--~g-----~~~~~~l~~GDv~v~P~G-~~H~~~N~G-~  167 (240)
                      ++.+..+...||...|+|=|+++.-++.|++|+++....+.  ++     ...+..+++|++.++... -+|.+.|.+ +
T Consensus        65 ~fel~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~~~~iH~v~N~~~~  144 (186)
T d3elna1          65 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT  144 (186)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred             CeEEEEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeCCCCCcceeecCCCC
Confidence            47888899999999999999988999999999999887642  11     224678999999988655 599999998 4


Q ss_pred             CCEEEEEEEeCC
Q 045405          168 EPATFIPIFNTQ  179 (240)
Q Consensus       168 ~~a~~i~~~~s~  179 (240)
                      ++++.+-++..+
T Consensus       145 ~~avsLHvYspP  156 (186)
T d3elna1         145 EPAVSLHLYSPP  156 (186)
T ss_dssp             CCEEEEEEEESC
T ss_pred             CCeEEEEEeCCC
Confidence            778888777543

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=97.49  E-value=0.00012  Score=51.97  Aligned_cols=56  Identities=16%  Similarity=0.124  Sum_probs=41.5

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEe
Q 045405          102 RIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLN  164 (240)
Q Consensus       102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N  164 (240)
                      ...-.||.. +.++  ..+|+.||++|++++..  .+|+  ..++++||.+++|+|..=.+..
T Consensus        22 vW~~~pg~f-~~~y--~~~E~~~ileG~v~i~~--~~G~--~~~~~aGD~~~~p~G~~~~W~v   77 (88)
T d1o5ua_          22 IWEKEVSEF-DWYY--DTNETCYILEGKVEVTT--EDGK--KYVIEKGDLVTFPKGLRCRWKV   77 (88)
T ss_dssp             EEEECSEEE-EEEC--SSCEEEEEEEEEEEEEE--TTCC--EEEEETTCEEEECTTCEEEEEE
T ss_pred             eEeecCcEE-EEEc--CccEEEEEEEeEEEEEc--CCCC--EEEEeCCCEEEECCCCEEEEEE
Confidence            345567553 3344  46899999999999864  4576  4689999999999999755544

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=97.22  E-value=0.0012  Score=52.85  Aligned_cols=80  Identities=16%  Similarity=0.147  Sum_probs=61.2

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccC--Ce-E---EEEEECCCCEEEe--CCCCeEEEEec-CC
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN--NT-F---FSKVLTPGKVFLI--PRALVHFQLNV-GN  167 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~--g~-~---~~~~l~~GDv~v~--P~G~~H~~~N~-G~  167 (240)
                      ++.+..+...||...++|-|. ...++.|++|+....+....  +. +   ....+++||+.++  +.|.+|.+.|. ++
T Consensus        67 ~f~i~~i~W~pG~~tpiHdH~-~w~~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~l~~G~v~~~~~~~~~IH~v~N~~~~  145 (192)
T d2gm6a1          67 RFSIVSFVWGPGQRTPIHDHT-VWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDD  145 (192)
T ss_dssp             SCEEEEEEECTTCBCCSBCCS-SCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CEEEEEEecCCCCCCCCCCCC-CceEEEEEcCeEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCceeEEecCCCC
Confidence            477888999999999999996 56889999999987766432  21 1   2467999999887  34679999997 55


Q ss_pred             CCEEEEEEEe
Q 045405          168 EPATFIPIFN  177 (240)
Q Consensus       168 ~~a~~i~~~~  177 (240)
                      ++++-|=++.
T Consensus       146 ~~avSLHvYg  155 (192)
T d2gm6a1         146 RVSISIHVYG  155 (192)
T ss_dssp             SCEEEEEEES
T ss_pred             ccEEEEEECC
Confidence            6676665554

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.12  E-value=0.0013  Score=53.08  Aligned_cols=76  Identities=17%  Similarity=0.219  Sum_probs=57.5

Q ss_pred             cCCcccCCccCC---CCCeEEEEeeCEEEEEEEccC------CeEEEEEECC--CCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405          106 DVGGINPPHTHP---RGTEAGIVTRGTVLVGLVTTN------NTFFSKVLTP--GKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus       106 ~pGg~~~pH~Hp---~a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      .+|.++.+|+|.   ....+++|++|++...++|-.      |+.+...|.+  +..++||+|..|.+...++. +.++.
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~-~~i~Y  132 (198)
T d2ixca1          54 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN-STVMY  132 (198)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS-EEEEE
T ss_pred             ehhhheeeeeecccchhhhhhhhhhceEEEEEEecccccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCc-ceeec
Confidence            688899999873   357999999999999998853      4667788866  45999999999999998655 44443


Q ss_pred             EEeC-CCCC
Q 045405          175 IFNT-QNPG  182 (240)
Q Consensus       175 ~~~s-~~Pg  182 (240)
                      ..+. -+|.
T Consensus       133 ~~s~~y~p~  141 (198)
T d2ixca1         133 LCSAEYNPQ  141 (198)
T ss_dssp             EESSCCCTT
T ss_pred             ccCCccCHH
Confidence            3333 3454

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.07  E-value=0.002  Score=51.33  Aligned_cols=81  Identities=12%  Similarity=0.094  Sum_probs=58.8

Q ss_pred             EEcCCcccCCccCCC---CCeEEEEeeCEEEEEEEccC------CeEEEEEECC--CCEEEeCCCCeEEEEecCCCCEEE
Q 045405          104 DLDVGGINPPHTHPR---GTEAGIVTRGTVLVGLVTTN------NTFFSKVLTP--GKVFLIPRALVHFQLNVGNEPATF  172 (240)
Q Consensus       104 ~l~pGg~~~pH~Hp~---a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~  172 (240)
                      .-.+|.++..|+|..   ...+++|++|++...++|..      |+.....|.+  +..+++|+|..|.+...+++....
T Consensus        53 ~s~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~~~i~  132 (183)
T d1dzra_          53 KSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFL  132 (183)
T ss_dssp             EEETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEE
T ss_pred             eeccceeEEEEecccccchhhheeeccccEEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecCcceEE
Confidence            336899999999842   36899999999999999843      4667778855  569999999999999986544444


Q ss_pred             EEEEeCCCCCce
Q 045405          173 IPIFNTQNPGVS  184 (240)
Q Consensus       173 i~~~~s~~Pg~~  184 (240)
                      +..-+.-+|+..
T Consensus       133 Y~~~~~y~p~~e  144 (183)
T d1dzra_         133 YKATNYYSPSSE  144 (183)
T ss_dssp             EEESSCCCTTTE
T ss_pred             EeCCcccCccCc
Confidence            322222355543

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=97.07  E-value=0.0016  Score=54.48  Aligned_cols=64  Identities=23%  Similarity=0.209  Sum_probs=48.6

Q ss_pred             EEEcC-CcccCCccCCCCCeEEEEeeCEEEEEEEccCC----------------------------------eEEEEEEC
Q 045405          103 IDLDV-GGINPPHTHPRGTEAGIVTRGTVLVGLVTTNN----------------------------------TFFSKVLT  147 (240)
Q Consensus       103 v~l~p-Gg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g----------------------------------~~~~~~l~  147 (240)
                      +-+.+ |+..++|+.+. +-++..++|+=+..+..+..                                  +.+..+|+
T Consensus       126 ~~~~~~g~~~~~H~D~~-d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  204 (319)
T d1vrba1         126 VYAAKNGGGFKAHFDAY-TNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLT  204 (319)
T ss_dssp             EEEECSSCCCCSEECSS-EEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEEC
T ss_pred             EEecCCCCCCccccCCC-ceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEEC
Confidence            33444 55689999864 67888899998888875421                                  11456899


Q ss_pred             CCCEEEeCCCCeEEEEecCC
Q 045405          148 PGKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus       148 ~GDv~v~P~G~~H~~~N~G~  167 (240)
                      +||++++|+|..|+..|.++
T Consensus       205 pGDvLYiP~gw~H~v~s~~~  224 (319)
T d1vrba1         205 PGTMLYLPRGLWHSTKSDQA  224 (319)
T ss_dssp             TTCEEEECTTCEEEEECSSC
T ss_pred             CCCEEEeCCCceEEeEecCC
Confidence            99999999999999998653

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=97.06  E-value=0.003  Score=49.66  Aligned_cols=58  Identities=21%  Similarity=0.211  Sum_probs=48.9

Q ss_pred             cCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405          106 DVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV  165 (240)
Q Consensus       106 ~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~  165 (240)
                      .|+.-.--|+.+. +|++|=++|...+.+++ +|+.....+++||++.+|+.++|.-+-.
T Consensus        43 GPN~R~DyH~~~~-eE~FyQlkG~m~Lkv~e-~g~~~di~I~EGe~fLLP~~vpHSPqR~  100 (174)
T d1yfua1          43 GPNHRTDYHDDPL-EEFFYQLRGNAYLNLWV-DGRRERADLKEGDIFLLPPHVRHSPQRP  100 (174)
T ss_dssp             SCBCCCCEEECSS-CEEEEEEESCEEEEEEE-TTEEEEEEECTTCEEEECTTCCEEEEBC
T ss_pred             CCcccCccccCcc-hhheeeeccceEEEEEe-CCceEEEEcCCCcEEEeCCCCCCCcccC
Confidence            4444455688864 99999999999999986 5877789999999999999999998764

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=97.03  E-value=0.00095  Score=52.90  Aligned_cols=78  Identities=15%  Similarity=0.146  Sum_probs=56.8

Q ss_pred             EcCCcccCCccCC---CCCeEEEEeeCEEEEEEEccC------CeEEEEEEC--CCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405          105 LDVGGINPPHTHP---RGTEAGIVTRGTVLVGLVTTN------NTFFSKVLT--PGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus       105 l~pGg~~~pH~Hp---~a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~--~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      -.+|.++.+|+|.   ....+++|++|++...++|..      |+.....|.  .+..+++|+|..|..+..++.. .++
T Consensus        52 s~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~~-~i~  130 (176)
T d1wlta1          52 SRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSI-VIY  130 (176)
T ss_dssp             ECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEE-EEE
T ss_pred             echheeeecccccccCCccEEEEEeccceEEEEEeeccCCCccceeeeEEeeccccceEEEccceeeEEeeccccc-eEE
Confidence            3788899999982   234699999999999998753      466666674  5669999999999999987643 333


Q ss_pred             EEEe-CCCCCc
Q 045405          174 PIFN-TQNPGV  183 (240)
Q Consensus       174 ~~~~-s~~Pg~  183 (240)
                      ...+ .-+|+.
T Consensus       131 Y~~~~~y~p~~  141 (176)
T d1wlta1         131 FITHNEYSPPH  141 (176)
T ss_dssp             EEESSCCCGGG
T ss_pred             EecCCccChhh
Confidence            3333 235553

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.0028  Score=49.84  Aligned_cols=59  Identities=19%  Similarity=0.356  Sum_probs=49.5

Q ss_pred             cCCcccCCccCCCCCeEEEEeeCEEEEEEEccC---CeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405          106 DVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTN---NTFFSKVLTPGKVFLIPRALVHFQLNV  165 (240)
Q Consensus       106 ~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~---g~~~~~~l~~GDv~v~P~G~~H~~~N~  165 (240)
                      .|+.-.--|+.+. +|++|=++|...+.+++.+   |+.....+++||++.+|+.++|.-+-.
T Consensus        41 GPN~R~DyH~~~~-eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSPqR~  102 (175)
T d1zvfa1          41 GPNERTDYHINPT-PEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRF  102 (175)
T ss_dssp             SSBCCSCEEECSS-CEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEEC
T ss_pred             CCCcccccccCcc-hhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCCCCC
Confidence            5555556788875 9999999999999998753   566788999999999999999998764

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.96  E-value=0.0013  Score=52.49  Aligned_cols=79  Identities=14%  Similarity=0.106  Sum_probs=58.0

Q ss_pred             cCCcccCCccC--CCCCeEEEEeeCEEEEEEEccC------CeEEEEEECC--CCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405          106 DVGGINPPHTH--PRGTEAGIVTRGTVLVGLVTTN------NTFFSKVLTP--GKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus       106 ~pGg~~~pH~H--p~a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      .+|.++..|++  +....+++|++|++...++|-.      |+.....|..  +..+++|+|..|.++..+++..+.+.+
T Consensus        57 ~kgvlRG~H~q~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~~~~~v~Y~~  136 (184)
T d2ixha1          57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKT  136 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             ccCceEEEEEcccchhheecceeeeEEEEEEeecccCCCCCCceEEeeecccCccEEEecCCeEEEEEecCCceEEEecc
Confidence            57888999986  3357899999999999998742      5777788866  568999999999999986554444332


Q ss_pred             EeCCCCCce
Q 045405          176 FNTQNPGVS  184 (240)
Q Consensus       176 ~~s~~Pg~~  184 (240)
                      -+.-+|+..
T Consensus       137 s~~y~~~~e  145 (184)
T d2ixha1         137 TDFWAPEHE  145 (184)
T ss_dssp             SSCCCGGGE
T ss_pred             ccccCcccc
Confidence            222355543

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=96.85  E-value=0.0049  Score=49.72  Aligned_cols=69  Identities=10%  Similarity=0.112  Sum_probs=53.6

Q ss_pred             EEcCCcccCCccCCC---CCeEEEEeeCEEEEEEEccC------CeEEEEEECC--CCEEEeCCCCeEEEEecCCCCEEE
Q 045405          104 DLDVGGINPPHTHPR---GTEAGIVTRGTVLVGLVTTN------NTFFSKVLTP--GKVFLIPRALVHFQLNVGNEPATF  172 (240)
Q Consensus       104 ~l~pGg~~~pH~Hp~---a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~  172 (240)
                      .-.+|.++.+|+|..   ...+++|++|++...++|-.      |+.....|.+  +..++||+|..|.+...++...+.
T Consensus        53 ~s~k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~SpTfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~t~v~  132 (202)
T d1oi6a_          53 MSKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMS  132 (202)
T ss_dssp             EECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEE
T ss_pred             cchhheeeeeeecccccchhheeeeccccEEEEEEecccCCCccceeeeeecccccceeEEeccceeEEEeeccccceeE
Confidence            346888999998832   46999999999999999742      5666667764  468999999999999987654333

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.83  E-value=0.0021  Score=51.12  Aligned_cols=78  Identities=18%  Similarity=0.172  Sum_probs=56.9

Q ss_pred             cCCcccCCccCC--CCCeEEEEeeCEEEEEEEccC------CeEEEEEECC--CCEEEeCCCCeEEEEecCCCCEEEEEE
Q 045405          106 DVGGINPPHTHP--RGTEAGIVTRGTVLVGLVTTN------NTFFSKVLTP--GKVFLIPRALVHFQLNVGNEPATFIPI  175 (240)
Q Consensus       106 ~pGg~~~pH~Hp--~a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l~~--GDv~v~P~G~~H~~~N~G~~~a~~i~~  175 (240)
                      .+|.++.+|+|.  ....+++|++|++...++|-.      |+.....|.+  +..+++|+|..|.....+++ +.++..
T Consensus        54 ~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv~vD~R~~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~-~~i~Y~  132 (183)
T d1ep0a_          54 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDE-CIVNYK  132 (183)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             ccCceEEeeecCCCcHHhhhcccccEEEEEEEeccCCCCcCCeeeEEEecCCCcceeEecCCceeeeeeccCc-eEEEEe
Confidence            678889999873  236799999999999999853      4666677755  56899999999999987655 443333


Q ss_pred             Ee-CCCCCce
Q 045405          176 FN-TQNPGVS  184 (240)
Q Consensus       176 ~~-s~~Pg~~  184 (240)
                      .+ .-+|+..
T Consensus       133 ~s~~y~p~~e  142 (183)
T d1ep0a_         133 CTELYHPEYD  142 (183)
T ss_dssp             ESSCCCGGGE
T ss_pred             ccCCcCcccc
Confidence            33 2356543

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=96.58  E-value=0.011  Score=46.97  Aligned_cols=78  Identities=14%  Similarity=0.105  Sum_probs=56.3

Q ss_pred             cCCcccCCccCC---CCCeEEEEeeCEEEEEEEccC------CeEEEEEE--CCCCEEEeCCCCeEEEEecCCCCEEEEE
Q 045405          106 DVGGINPPHTHP---RGTEAGIVTRGTVLVGLVTTN------NTFFSKVL--TPGKVFLIPRALVHFQLNVGNEPATFIP  174 (240)
Q Consensus       106 ~pGg~~~pH~Hp---~a~Ei~yVl~G~~~v~~v~~~------g~~~~~~l--~~GDv~v~P~G~~H~~~N~G~~~a~~i~  174 (240)
                      .+|.++.+|+|.   ...++++|++|++...++|..      ++.+...|  +.+..+++|+|..|.+...++.....+.
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~~t~i~Y~  133 (190)
T d2c0za1          54 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYL  133 (190)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             hhhheeeeeecccccchhheeeeeeeeEEEEEEeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCchheeEEe
Confidence            588889999752   346899999999999998854      34444444  7889999999999999988755444443


Q ss_pred             EEeCCCCCc
Q 045405          175 IFNTQNPGV  183 (240)
Q Consensus       175 ~~~s~~Pg~  183 (240)
                      .-+.-+|+.
T Consensus       134 ~s~~y~p~~  142 (190)
T d2c0za1         134 SSGTYDPAT  142 (190)
T ss_dssp             ESSCCCTTT
T ss_pred             cCCccCccc
Confidence            222234544

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=96.33  E-value=0.0032  Score=50.56  Aligned_cols=66  Identities=18%  Similarity=0.176  Sum_probs=52.9

Q ss_pred             cCCcccCCccCCCCCeEEEEe-eCEEEEEEEccC-----CeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEE
Q 045405          106 DVGGINPPHTHPRGTEAGIVT-RGTVLVGLVTTN-----NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATF  172 (240)
Q Consensus       106 ~pGg~~~pH~Hp~a~Ei~yVl-~G~~~v~~v~~~-----g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~  172 (240)
                      .+|.++.+|+|+. ..+++++ .|++...++|-.     |+.+...|..+..+++|+|..|.....+++....
T Consensus        65 ~kgvlRGlH~q~~-~k~v~~~~~G~i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d~t~i~  136 (194)
T d1nxma_          65 RKNVLRGLHAEPW-DKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYS  136 (194)
T ss_dssp             ETTBEEEEEECSS-CEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEEE
T ss_pred             eeeEEEEEEeccc-hhhhhhccccceeEEEEEeccccccceeeeeeeccCceEEEecceeeEEEeeccceeEE
Confidence            5788999999976 5777665 599988888642     4667889999999999999999999877554333

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0068  Score=54.08  Aligned_cols=83  Identities=13%  Similarity=0.163  Sum_probs=52.7

Q ss_pred             ccCCCCCCccceEEEEEEEcCCcc-cCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEec
Q 045405           87 VFGFPAVNTQGVALFRIDLDVGGI-NPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNV  165 (240)
Q Consensus        87 ~~~~P~l~~~gls~~~v~l~pGg~-~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~  165 (240)
                      ...-|..+. |+++..-.... .| ...-..-+++|++||.+|++++.-  +-|+   ..+++||++|||+|+.+.+.-.
T Consensus       120 g~Gd~~~~~-G~aihiy~~n~-sM~~~~f~NADGDeLi~~~~Gsg~l~T--efG~---L~v~pGDyvVIPRG~~frv~~~  192 (439)
T d1eyba_         120 GAGDIKSNN-GLAIHIFLCNT-SMENRCFYNSDGDFLIVPQKGNLLIYT--EFGK---MLVQPNEICVIQRGMRFSIDVF  192 (439)
T ss_dssp             EESCGGGTC-CEEEEEEEECS-CCCSEEEEESSEEEEEEEEESCEEEEE--TTEE---EEECTTEEEEECTTCCEEEECS
T ss_pred             ccCCccccc-CcEEEEEecCC-CCccceeEcCCCCEEEEEEeCcEEEEE--eeeE---EEecCCcEEEecCceEEEEecC
Confidence            344444442 55544333333 33 233456788999999999998774  3454   5899999999999999887654


Q ss_pred             CCCCEEEEEEE
Q 045405          166 GNEPATFIPIF  176 (240)
Q Consensus       166 G~~~a~~i~~~  176 (240)
                      +.....++.++
T Consensus       193 ~~~r~yiiE~~  203 (439)
T d1eyba_         193 EETRGYILEVY  203 (439)
T ss_dssp             SSEEEEEEEEE
T ss_pred             CCceEEEEeec
Confidence            33233333333

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.024  Score=48.09  Aligned_cols=66  Identities=20%  Similarity=0.264  Sum_probs=49.8

Q ss_pred             EEEEcCCc-ccCCccCCCCCeEEEEeeCEEEEEEEccCC-----------------------------------eEEEEE
Q 045405          102 RIDLDVGG-INPPHTHPRGTEAGIVTRGTVLVGLVTTNN-----------------------------------TFFSKV  145 (240)
Q Consensus       102 ~v~l~pGg-~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g-----------------------------------~~~~~~  145 (240)
                      .+-+.++| ..+.|+-+. .-+..+++|+=++.+..+..                                   +.+..+
T Consensus       172 ~lwiG~~gs~t~~H~D~~-~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~  250 (335)
T d1h2ka_         172 LLLIGMEGNVTPAHYDEQ-QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETV  250 (335)
T ss_dssp             EEEEECTTCEEEEECCSE-EEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEE
T ss_pred             EEEEcCCCCCCccccccc-cceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEE
Confidence            35566655 466787644 67889999998888874420                                   235678


Q ss_pred             ECCCCEEEeCCCCeEEEEecCCC
Q 045405          146 LTPGKVFLIPRALVHFQLNVGNE  168 (240)
Q Consensus       146 l~~GDv~v~P~G~~H~~~N~G~~  168 (240)
                      |++||++++|+|..|.+.|.++.
T Consensus       251 l~pGd~L~iP~~w~H~V~~~~~~  273 (335)
T d1h2ka_         251 VGPGDVLYIPMYWWHHIESLLNG  273 (335)
T ss_dssp             ECTTCEEEECTTCEEEEEECTTS
T ss_pred             ECCCCEEeeCCCCeEEEEEcCCC
Confidence            99999999999999999997653

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.04  Score=44.42  Aligned_cols=70  Identities=16%  Similarity=0.145  Sum_probs=52.9

Q ss_pred             EEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCC--CCeEEEEecC-CCCEEEE
Q 045405          100 LFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPR--ALVHFQLNVG-NEPATFI  173 (240)
Q Consensus       100 ~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~--G~~H~~~N~G-~~~a~~i  173 (240)
                      +..-.+.||+-+++|-|.+-+-+.||++|+++-.  |+-|.  ..++++||+-..-+  |+.|.-.|.. ++++.++
T Consensus        43 ~ndd~~~pg~gf~~HpH~g~eivT~vl~G~~~H~--DS~G~--~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~~l  115 (231)
T d1tq5a1          43 INDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ--DSMGN--KEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLY  115 (231)
T ss_dssp             EEEEEECTTCEEEEEEECSCEEEEEEEESEEEEE--ESSSC--EEEEETTCEEEEECTTCEEEEEECCCSSCCEEEE
T ss_pred             EecceecCCCCCCCCCcCCeeEEEEEEeEEEEEC--CCCCC--cEEECCCcEEEEecCCcEEEEeeccccCCCeEEE
Confidence            4577899999999999977666679999987643  55555  57899999987765  5689888864 3455554

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.25  Score=40.86  Aligned_cols=92  Identities=14%  Similarity=0.144  Sum_probs=60.0

Q ss_pred             cCCceEEEecccCCCCCCccc--eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEe
Q 045405           77 VFKRAVTFGDVFGFPAVNTQG--VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLI  154 (240)
Q Consensus        77 ~~G~~v~~~~~~~~P~l~~~g--ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~  154 (240)
                      ..|..++.+..  .+.+...+  +-+....+.+++-+++|-|.+-+-+.||++|... .-.|.-|.  ..++++||+-..
T Consensus        17 g~G~~v~R~~~--~~~~~~~~Pf~~~d~~~~~~~~gf~~HPH~g~e~vTy~~~G~~~-~H~Ds~G~--~~~i~~G~vq~m   91 (288)
T d1j1la_          17 GVGARVRRSIG--RPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSM-AHEDFCGH--TGKMNPGDLQWM   91 (288)
T ss_dssp             TBTEEEEECTT--STTCCCCTTEEEEEEEEECTTCBEEEEEEBSEEEEEEECSSSCE-EEEETTSC--EEEECTTCEEEE
T ss_pred             cCCEEEEEeCC--CCCccccCceEEeEcCcCCCCCCCCCCCcCCeEEEEEEEeCCeE-EEecCCCC--eeEecCCCEEEE
Confidence            44555555432  23333333  3344667778777899999664555588998532 23355465  579999999887


Q ss_pred             CC--CCeEEEEecCCCCEEEE
Q 045405          155 PR--ALVHFQLNVGNEPATFI  173 (240)
Q Consensus       155 P~--G~~H~~~N~G~~~a~~i  173 (240)
                      -+  |+.|.-.|..++++..+
T Consensus        92 tAG~Gi~HsE~~~~~~~~~~l  112 (288)
T d1j1la_          92 TAGRGILHAEMPCSEEPAHGL  112 (288)
T ss_dssp             ECTTCEEEEEEECSSSCEEEE
T ss_pred             ecccceEecccccccccceee
Confidence            65  56999999888886654

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=93.07  E-value=0.15  Score=45.12  Aligned_cols=77  Identities=14%  Similarity=0.125  Sum_probs=51.7

Q ss_pred             ceEEEEEEEcCCcccC--CccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCC---CCEE
Q 045405           97 GVALFRIDLDVGGINP--PHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGN---EPAT  171 (240)
Q Consensus        97 gls~~~v~l~pGg~~~--pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~---~~a~  171 (240)
                      .+.+.++++.++....  .+.. +..++++|++|++++.....++.  ...+++||++++|+|..-.+...+.   +.++
T Consensus       356 ~F~v~~~~l~~~~~~~~~~~~~-~~~~Illv~~G~~~i~~~~~~~~--~~~l~~G~~~fIpa~~~~~i~~~~~~~~~~~~  432 (440)
T d1pmia_         356 EFSVLQTIFDKSKGGKQVIEGL-NGPSIVIATNGKGTIQITGDDST--KQKIDTGYVFFVAPGSSIELTADSANQDQDFT  432 (440)
T ss_dssp             SCEEEEEECCTTTCCEEEECCC-SSCEEEEEEESEEEEEETTCGGG--CEEEETTCEEEECTTCCEEEEECSSCCSSCCE
T ss_pred             ceEEEEEEECCCCCceeeecCC-CCcEEEEEEcCEEEEEecCCCcc--EEEeCCceEEEEcCCceEEEEeecCCCCCceE
Confidence            3677888888765322  2222 35799999999999876332222  4689999999999998666666553   3455


Q ss_pred             EEEEE
Q 045405          172 FIPIF  176 (240)
Q Consensus       172 ~i~~~  176 (240)
                      ++-+|
T Consensus       433 ~~rA~  437 (440)
T d1pmia_         433 TYRAF  437 (440)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            54433

>d1znpa1 b.82.1.16 (A:4-143) Hypothetical protein Atu3615 {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein Atu3615
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.25  E-value=1  Score=33.50  Aligned_cols=88  Identities=11%  Similarity=-0.007  Sum_probs=60.3

Q ss_pred             CcCCceEEEecccCCCCCCccceEEEEEEEcCCcccCCccC--CCCCeEEEEeeCE-EEEEEEccCCeEEEEE----ECC
Q 045405           76 DVFKRAVTFGDVFGFPAVNTQGVALFRIDLDVGGINPPHTH--PRGTEAGIVTRGT-VLVGLVTTNNTFFSKV----LTP  148 (240)
Q Consensus        76 ~~~G~~v~~~~~~~~P~l~~~gls~~~v~l~pGg~~~pH~H--p~a~Ei~yVl~G~-~~v~~v~~~g~~~~~~----l~~  148 (240)
                      .+.||..++.......+-+. -++....-|.++...  |||  .+++|+.+-..|. +++.+..++++.....    +.+
T Consensus        16 HPEGG~f~et~rs~~~~~R~-~~T~IYyLL~~~~~s--~~Hrv~~sDEiw~~~~G~pL~l~~~~~~g~~~~~~lG~~~~~   92 (140)
T d1znpa1          16 HPEGGFYHQTFRDKAGGERG-HSTAIYYLLEKGVRS--HWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILE   92 (140)
T ss_dssp             CTTSSEEEEEEECSSSTTTC-SCEEEEEEEESSCCE--EEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTT
T ss_pred             CCCCceEEEEEECCCCCCCc-ceEEEEEEcCCCCCC--ccccccCCCeEEEEcCCceEEEEEecCCCCEEEEEecCCccc
Confidence            46777777766554444333 355555667787765  666  3568999999997 7788888877544444    456


Q ss_pred             CC--EEEeCCCCeEEEEecC
Q 045405          149 GK--VFLIPRALVHFQLNVG  166 (240)
Q Consensus       149 GD--v~v~P~G~~H~~~N~G  166 (240)
                      |+  .++||+|..+..+..|
T Consensus        93 ge~~q~vVp~g~W~aa~~~g  112 (140)
T d1znpa1          93 GERPQVIVPANCWQSAESLG  112 (140)
T ss_dssp             TEESEEEECTTCEEEEEESS
T ss_pred             CCceeEEECCCeEEeeeECC
Confidence            76  6789999988777655

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Uncharacterized protein YeaR
species: Escherichia coli [TaxId: 562]

Probab=90.60  E-value=1.2  Score=31.78  Aligned_cols=70  Identities=19%  Similarity=0.140  Sum_probs=46.8

Q ss_pred             CCcccCCc----cCCCCCeEEEEeeCEEEEE-EEccCC-e-EEEEEECCCCEEEeCCCCeEEEEecCCCCEEEEEEE
Q 045405          107 VGGINPPH----THPRGTEAGIVTRGTVLVG-LVTTNN-T-FFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIF  176 (240)
Q Consensus       107 pGg~~~pH----~Hp~a~Ei~yVl~G~~~v~-~v~~~g-~-~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i~~~  176 (240)
                      |-++...|    +-.+--..+-|++|+++.. +.++.+ . .....+++|+.-++|+...|.+.-.++..-..+.++
T Consensus        23 P~~ll~~H~~~nTK~Gvwg~l~Vl~G~L~y~~~~d~~~~~~e~~~~~~ag~~~~~~Pq~wH~Ve~lsdD~~f~v~Fy   99 (109)
T d3bb6a1          23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFF   99 (109)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEEEEEEE
T ss_pred             hHHHHhhccCCCcCCcEEEEEEEEEEEEEEEEeccCCCCCcceEEEecCCCceeeCCCccEEeEECCCCEEEEEEEE
Confidence            34555667    4444455678999999865 444322 1 124678999999999999999998765433334444

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=90.43  E-value=0.4  Score=40.16  Aligned_cols=58  Identities=16%  Similarity=0.313  Sum_probs=42.1

Q ss_pred             eEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEE
Q 045405           98 VALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQL  163 (240)
Q Consensus        98 ls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~  163 (240)
                      +++.++++.......   ......+++|++|++++..   ++.  +..|++||.+++|++...+..
T Consensus       247 F~~~~~~~~~~~~~~---~~~~~~il~vi~G~~~i~~---~~~--~~~l~~G~~~~ipa~~~~~~i  304 (315)
T d1qwra_         247 FSVYKWDINGEAEMA---QDESFLICSVIEGSGLLKY---EDK--TCPLKKGDHFILPAQMPDFTI  304 (315)
T ss_dssp             CEEEEEEEEEEEEEC---CCSSCEEEEEEEEEEEEEE---TTE--EEEEETTCEEEECTTCCCEEE
T ss_pred             EEEEEEEecCcEEec---cCCCcEEEEEEeCeEEEEE---CCE--EEEEecCcEEEEECCCCCEEE
Confidence            667777776332221   2345799999999998864   344  568999999999999876654

>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Escherichia coli [TaxId: 562]

Probab=90.12  E-value=2.2  Score=35.13  Aligned_cols=81  Identities=21%  Similarity=0.238  Sum_probs=55.3

Q ss_pred             ceEEEEEEEcCCcc---cCCccCCCCCeEEEEee----CEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCC
Q 045405           97 GVALFRIDLDVGGI---NPPHTHPRGTEAGIVTR----GTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEP  169 (240)
Q Consensus        97 gls~~~v~l~pGg~---~~pH~Hp~a~Ei~yVl~----G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~  169 (240)
                      .+-+..-.+.||+.   .|||.|.+..|.+|-.+    |.+. .+..+.+......++-+|.++.|.=.+|.-.  |...
T Consensus       176 qLlmG~tvl~PGg~WSSyPpHkHDRrmEeyyYF~l~~~~~Vf-h~mGep~etrhivv~neqaVisP~wsih~g~--gt~~  252 (277)
T d1xrua1         176 QLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACVF-HMMGQPQETRHIVMHNEQAVISPSWSIHSGV--GTKA  252 (277)
T ss_dssp             SCEEEEEEECTTCCEESCSEEECTTEEEEEEEESCCTTCCEE-EEEEETTEEEEEEECSSEEEEECTTCEEEEE--ESSC
T ss_pred             eEEEEEEEEcCCCccCCCCCccCCCCcceEEEEEcCCCceEE-EecCCCCceeEEEEECCcEEECCCCcccCCC--CCcc
Confidence            46677778899983   69999987767666543    4443 3333334555678999999999988899854  5555


Q ss_pred             EEEEEEEeCCC
Q 045405          170 ATFIPIFNTQN  180 (240)
Q Consensus       170 a~~i~~~~s~~  180 (240)
                      -.||...--+|
T Consensus       253 y~fiW~maGen  263 (277)
T d1xrua1         253 YTFIWGMVGEN  263 (277)
T ss_dssp             CEEEEEEEESC
T ss_pred             eEEEEEEcccc
Confidence            56665554333

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.90  E-value=0.5  Score=38.88  Aligned_cols=81  Identities=14%  Similarity=0.116  Sum_probs=58.2

Q ss_pred             CCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCE
Q 045405           91 PAVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPA  170 (240)
Q Consensus        91 P~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a  170 (240)
                      |......+.++.+.+++|+....-......-++||++|++.+.-  . ..  ...+++++++++..|..-.+.+.+++++
T Consensus       160 pi~~~s~~~~~~i~l~~g~~~~~~l~~~~~~~lyvi~G~~~v~g--~-~~--~~~l~~~~~~~l~~gd~~~i~~~~~~~a  234 (288)
T d1j1la_         160 KVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGP--D-DA--QQKIEPHHTAVLGEGDSVQVENKDPKRS  234 (288)
T ss_dssp             CCCCSSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEESC--T-TS--CEEECTTEEEEECSCSEEEEECCSSSCE
T ss_pred             ccccCCchhhhhhhcccCceEEEecCCCCeEEEEEEEeeEEecC--c-cc--ceeecCceEEEEcCCCeEEEEeCCCCCC
Confidence            55455578899999999997543333344678999999998752  1 11  3468889988888887666777788888


Q ss_pred             EEEEEE
Q 045405          171 TFIPIF  176 (240)
Q Consensus       171 ~~i~~~  176 (240)
                      .++.+-
T Consensus       235 ~~LLl~  240 (288)
T d1j1la_         235 HFVLIA  240 (288)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            876543

>d1yuda1 b.82.1.16 (A:1-158) Hypothetical protein SO0799 {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein SO0799
species: Shewanella oneidensis [TaxId: 70863]

Probab=88.60  E-value=3.8  Score=30.78  Aligned_cols=131  Identities=14%  Similarity=0.163  Sum_probs=77.9

Q ss_pred             CcCCceEEEecccCCC-CCCccceEEEEEEEcCCcccCCccCCCCCeEEEEeeCE-EEEEEEccCCeEEEEE----ECCC
Q 045405           76 DVFKRAVTFGDVFGFP-AVNTQGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGT-VLVGLVTTNNTFFSKV----LTPG  149 (240)
Q Consensus        76 ~~~G~~v~~~~~~~~P-~l~~~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~-~~v~~v~~~g~~~~~~----l~~G  149 (240)
                      .+.||..++....... .-...-.+....-|.+|....+|-- .++|+.+-..|. +++.+++++|+.....    +..|
T Consensus        16 HPEGG~fret~rs~~~~~~~R~~~T~IY~LL~~~~~S~~Hrv-~sdEiw~~~~G~pL~l~~~~~~g~~~~~~lG~d~~~g   94 (158)
T d1yuda1          16 HVEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRL-TADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAG   94 (158)
T ss_dssp             CTTSSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCEEEEEC-SSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTT
T ss_pred             CCCCceEEEEEeCCCCCCCCCcceEEEEEEecCCCCCceEEe-cCCeEEEEecCCCEEEEEecCCCCeEEeeeccCcCcC
Confidence            4567776665443221 1122235666667788876655544 579999999997 6788888888765555    4467


Q ss_pred             CE--EEeCCCCeEEEEecCCCCEEEEEEEeCCCCCceeccchhhcCCCCCCHHHHHhhcCCCHHHHHHH
Q 045405          150 KV--FLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTLFDTTPPVPNEVLTKSFRVGDDVINTI  216 (240)
Q Consensus       150 Dv--~v~P~G~~H~~~N~G~~~a~~i~~~~s~~Pg~~~~~~~lf~s~~~~p~~vla~af~v~~~~v~~l  216 (240)
                      +.  ++||+|...... .......+++.  .-.||+..-.   |.   -.+.+-|.+.|---.+.|++|
T Consensus        95 e~~q~vVp~g~w~~a~-~~~g~~sLvsc--tVaPGFdf~D---fe---l~~~~~L~~~~P~~~~~I~~l  154 (158)
T d1yuda1          95 ERPQFLVPKGCIFGSA-MNQDGFSLVGC--MVSPGFTFDD---FE---LFSQEALLAMYPQHKAVVQKL  154 (158)
T ss_dssp             EESCEEECTTCEEEEE-ESSSSEEEEEE--EESSCCCGGG---CC---BCBHHHHHHSCCTTHHHHTTS
T ss_pred             ceeEEEEcCCCEEEEE-EcCCCcEEEEE--EEcCCccchh---cc---ccCHHHHHHHCchhHHHHHHH
Confidence            65  899999654332 23334444432  2356664422   22   134556666676556666655

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=88.07  E-value=0.99  Score=35.69  Aligned_cols=67  Identities=13%  Similarity=0.055  Sum_probs=45.0

Q ss_pred             cceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405           96 QGVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus        96 ~gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      ..+.+..+.+.+|+....-..+...-++||++|++.+     +|+    .+++||.+++-.+-.-.+..  +++++++
T Consensus       158 ~~~~l~~~~l~~g~~~~~~l~~~~~~~lyvi~G~l~i-----~g~----~l~~gd~~~l~~~~~l~i~A--~~~a~~L  224 (231)
T d1tq5a1         158 QDMELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTI-----NGV----KASTSDGLAIWDEQAISIHA--DSDSEVL  224 (231)
T ss_dssp             SSCEEEEEEECTTCEEEECCCTTCEEEEEEEESEEEE-----TTE----EEETTCEEEEESCSCEEEEE--SSSEEEE
T ss_pred             cccEEEEEEecCCceEEEcccCCccEEEEEEeeEEEE-----CCE----EccCCCeEEECCCCeEEEEE--CCCCEEE
Confidence            4678899999998854332333335689999999876     254    68899988776655444444  2455554

>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Type II Proline 3-hydroxylase (proline oxidase)
domain: Type II Proline 3-hydroxylase (proline oxidase)
species: Streptomyces sp. [TaxId: 1931]

Probab=87.26  E-value=0.52  Score=39.35  Aligned_cols=71  Identities=18%  Similarity=0.192  Sum_probs=45.3

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEE--cc-------CCeEEEEEECCCCEEEeCCCCeEEEEecCC
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLV--TT-------NNTFFSKVLTPGKVFLIPRALVHFQLNVGN  167 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v--~~-------~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~  167 (240)
                      ...+.++.+.||+.+.||.=.  .+...-..+..++.+-  ++       +++  ...+++|+++++.-+..|+..|.|+
T Consensus        90 ~~r~~rirL~pGg~I~pH~D~--~~~~~~~~~~~RiHIPL~Tn~~~~f~v~~~--~~~m~~Ge~w~~D~~~~H~v~N~sd  165 (290)
T d1e5ra_          90 HLQMARSRNLKNAIVIPHRDF--VELDREVDRYFRTFMVLEDSPLAFHSNEDT--VIHMRPGEIWFLDAATVHSAVNFSE  165 (290)
T ss_dssp             SEEEEEEEEEESEEEEEECCC----------CBCCEEEECSCCTTEEEEETTE--EECCCTTEEEECCTTSCEEEEESSS
T ss_pred             eeeeeeeeecCCcEecCCcCC--ccccccCCceEEEEEEeecCCceEEEECCE--EEECCCCeEEEEcCCCeEEEECCCC
Confidence            467888899999999998521  2222111222222221  11       133  5789999999999999999999998


Q ss_pred             CCEE
Q 045405          168 EPAT  171 (240)
Q Consensus       168 ~~a~  171 (240)
                      ++-+
T Consensus       166 ~dRI  169 (290)
T d1e5ra_         166 ISRQ  169 (290)
T ss_dssp             SCCC
T ss_pred             CceE
Confidence            7643

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Tellurite resistance protein B, TehB
species: Vibrio fischeri [TaxId: 668]

Probab=87.18  E-value=2  Score=29.76  Aligned_cols=51  Identities=18%  Similarity=0.125  Sum_probs=36.9

Q ss_pred             eEEEEeeCEEEEE-EEccCC--eEEEEEECCCCEEEeCCCCeEEEEecCCCCEEEE
Q 045405          121 EAGIVTRGTVLVG-LVTTNN--TFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFI  173 (240)
Q Consensus       121 Ei~yVl~G~~~v~-~v~~~g--~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a~~i  173 (240)
                      ..+-|++|+++.. +.+.++  ......+++|+.-++|+...|.+.-  .+++.+.
T Consensus        36 g~i~Vl~G~L~y~~~~d~~~~e~~~~~~~~~g~~~~~~Pq~wH~Ve~--sdD~~f~   89 (96)
T d3dl3a1          36 GQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIEL--SDDAQFN   89 (96)
T ss_dssp             EEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEE--CTTCEEE
T ss_pred             EEEEEEEEEEEEEEeccCCCCcccEEEEecCCCcceeCCCccEEEEe--CCCeEEE
Confidence            4568999999874 545443  1125788999999999999999984  3444543

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=86.77  E-value=0.89  Score=32.33  Aligned_cols=53  Identities=19%  Similarity=0.118  Sum_probs=37.1

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeC
Q 045405          102 RIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIP  155 (240)
Q Consensus       102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P  155 (240)
                      .-.+++|..+. +--.....+++|++|.+++...+++++..-..+.+||++-.+
T Consensus        24 ~~~~~kG~~i~-~~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~   76 (132)
T d1ft9a2          24 SKIHAKGSLVC-TGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMH   76 (132)
T ss_dssp             EEEECTTCEEE-CTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESC
T ss_pred             EEEecCCcEEE-CCCCCCCEEEEEEeCeEeeeccccccceeecccccccccccc
Confidence            34566766542 223345799999999999988766445556788999987544

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.47  E-value=1.7  Score=30.15  Aligned_cols=50  Identities=12%  Similarity=0.122  Sum_probs=36.1

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe-EEEEEECCCCEE
Q 045405          102 RIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT-FFSKVLTPGKVF  152 (240)
Q Consensus       102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~-~~~~~l~~GDv~  152 (240)
                      ...+++|..+- +--.....+.+|++|.+++...+++|+ ..-..+++||++
T Consensus        15 ~~~~~~g~~i~-~~g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~   65 (132)
T d1i5za2          15 IHKYPSKSTLI-HQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFI   65 (132)
T ss_dssp             EEEECTTCEEE-CTTSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEE
T ss_pred             EEEECcCCEEE-cCCCCCCEEEEEEEccceeeeccccchhhhhhhhCccccc
Confidence            34667776542 223345799999999999999888775 334677999987

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=84.33  E-value=1.6  Score=30.15  Aligned_cols=55  Identities=15%  Similarity=0.034  Sum_probs=41.9

Q ss_pred             EEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEe
Q 045405          104 DLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLN  164 (240)
Q Consensus       104 ~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N  164 (240)
                      .+.||-   -+.-..+.|+.-|++|++.+.+-   |...++.+++|+.|-+|++...-++-
T Consensus        28 Vm~pGe---Y~F~T~~~E~MeivsG~l~V~lp---g~~ew~~~~~G~sF~Vpans~F~ikv   82 (93)
T d2oyza1          28 VMLPGE---YTFGTQAPERMTVVKGALVVKRV---GEADWTTYSSGESFDVEGNSSFELQV   82 (93)
T ss_dssp             EECSEE---EEEEESSCEEEEEEESEEEEEET---TCSSCEEEETTCEEEECSSEEEEEEE
T ss_pred             EEeccE---EEEcCCCCEEEEEEeeEEEEECC---CCcccEEeCCCCeEEECCCCEEEEEE
Confidence            445653   34556689999999999999884   32237899999999999998766655

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=81.91  E-value=4.8  Score=28.26  Aligned_cols=50  Identities=8%  Similarity=0.035  Sum_probs=35.4

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe-EEEEEECCCCEE
Q 045405          102 RIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT-FFSKVLTPGKVF  152 (240)
Q Consensus       102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~-~~~~~l~~GDv~  152 (240)
                      +.++++|..+- |--.....+.+|++|++++...+++|+ ..-..+++||++
T Consensus        26 ~~~y~kg~~i~-~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~   76 (139)
T d3e5ua2          26 IRDFAKGSAVI-MPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLI   76 (139)
T ss_dssp             EEEECTTCEEE-CTTCCCCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             EEEECCCCEEE-eCCCCCCEEEEEEeccceEEEeeccccccceeecccccee
Confidence            34556666542 222345799999999999998888775 334678999976

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.86  E-value=1.8  Score=35.81  Aligned_cols=59  Identities=14%  Similarity=0.128  Sum_probs=42.6

Q ss_pred             ceEEEEEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEe
Q 045405           97 GVALFRIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLN  164 (240)
Q Consensus        97 gls~~~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N  164 (240)
                      -+++.++++........  . ...++++|++|++.+.    +++  +..+++||.+++|+..-.+...
T Consensus       228 ~F~~~~~~~~~~~~~~~--~-~~~~il~~~~G~~~i~----~~~--~~~l~~G~s~~iPA~~~~~~i~  286 (299)
T d1zx5a1         228 NFGLEVVDVTGTAEIKT--G-GVMNILYAAEGYFILR----GKE--TADLHRGYSCLVPASTDSFTVE  286 (299)
T ss_dssp             SEEEEEEEEEEEEEEEC--C-SBCEEEEEEESCEEEE----SSS--EEEECTTCEEEECTTCCEEEEE
T ss_pred             ceEEEEEEecCcEEecc--C-CceEEEEEeccEEEEe----CCC--EEEEcCCcEEEEecCCccEEEE
Confidence            46777777765433322  2 4579999999998763    244  4689999999999998877654

>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Enterococcus faecalis [TaxId: 1351]

Probab=81.52  E-value=6.9  Score=31.67  Aligned_cols=76  Identities=22%  Similarity=0.227  Sum_probs=42.6

Q ss_pred             ceEEEEEEEcCCcc---cCCccCCCCCeEEEEee---CEEEEEEEccCCeEEEEEECCCCEEEeCCCCeEEEEecCCCCE
Q 045405           97 GVALFRIDLDVGGI---NPPHTHPRGTEAGIVTR---GTVLVGLVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPA  170 (240)
Q Consensus        97 gls~~~v~l~pGg~---~~pH~Hp~a~Ei~yVl~---G~~~v~~v~~~g~~~~~~l~~GDv~v~P~G~~H~~~N~G~~~a  170 (240)
                      .+-+..-.+.||+.   .|||.|.+..|.+|-.+   +...+.+..+.++.....++-+|.++.|.=.+|.-  .|...-
T Consensus       174 qLlmG~tvl~pGg~WsS~PpH~HDRrmE~YyYFdl~e~~~V~H~mGep~eTrhivv~n~qaVisP~wsiHsg--~gt~~Y  251 (260)
T d1ywka1         174 QLQMGYTILEPGSAWNTMPCHTHERRMEAYVYFDMEEDTRIFHMMGKPDETKHLVMSNEQAAISPSWSIHSG--VGTSNY  251 (260)
T ss_dssp             SCEEEEEEECTTCCCCC--------CEEEEEEESCCTTCCEEEEESSTTSCEEEEECTTEEEEECTTSCCCE--EESSCC
T ss_pred             ceEEEEEEEcCCCccCCcCCcccCCCCceEEEEEcCCCceEEEeeCCCCceEEEEEECCcEEEcCCccccCC--CCccCc
Confidence            46676778999983   69999998877776543   22233333222333467889999999999888964  344444


Q ss_pred             EEEE
Q 045405          171 TFIP  174 (240)
Q Consensus       171 ~~i~  174 (240)
                      .||.
T Consensus       252 ~FiW  255 (260)
T d1ywka1         252 SFIW  255 (260)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.00  E-value=1.6  Score=30.66  Aligned_cols=50  Identities=14%  Similarity=0.146  Sum_probs=35.9

Q ss_pred             EEEEcCCcccCCccCCCCCeEEEEeeCEEEEEEEccCCe-EEEEEECCCCEE
Q 045405          102 RIDLDVGGINPPHTHPRGTEAGIVTRGTVLVGLVTTNNT-FFSKVLTPGKVF  152 (240)
Q Consensus       102 ~v~l~pGg~~~pH~Hp~a~Ei~yVl~G~~~v~~v~~~g~-~~~~~l~~GDv~  152 (240)
                      ..++++|..+--- -.-+..+.++++|++++...+.+|+ .....+.+||++
T Consensus        14 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~   64 (134)
T d2oz6a2          14 RRRYTAKSTIIYA-GDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF   64 (134)
T ss_dssp             EEEECTTCEEECT-TSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             EEEECCCCEEEeC-CCcCCEEEEEEEcccceeeeecccccceeeeccCCCcc
Confidence            4567777653221 2234799999999999999888775 344578899997