Citrus Sinensis ID: 045440

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKERRSSLPTTRPQKHGNLGESNEHDGKV
Secondary Structure (PSIPRED)
cccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHEcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHccccccccccccc
Coil and Loop (DISEMBL)
VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIwysnastkpggkerrsslpttrpqkhgnlgesnehdgkv
Flexible Loop (DISEMBL)
vgtnlsqfiCIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAStkpggkerrsslpttrpqkhgnlgesnehdgkv
Low Complexity Region (SEG)
VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKERRSSLPTTRPQKHGNLGESNEHDGKV
Disordered region (IsUnstruct)
****LSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS************************************
Disordered Region (DISOPRED)
VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWY*************************************
Disordered Region (DISEMBL)
VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAS*********************************
Disordered Region (DISPRO)
VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTK*******************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKERRSSLPTTRPQKHGNLGESNEHDGKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q9SRE4	347	UDP-galactose transporter	no	no	0.714	0.201	0.487	2e-13
Q8RXL8	357	Uncharacterized membrane	no	no	0.969	0.266	0.313	5e-09

>sp|Q9SRE4|UGAL2_ARATH UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 10/80 (12%)

Query: 1   VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
           V  N+SQ++CIGRF+A SFQVLGHMKT+ VL +G+L F  E +    + GM IA+ GM+ 
Sbjct: 239 VFCNISQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSE-MTFKNIAGMAIAIVGMVI 297

Query: 61  YS---------NASTKPGGK 71
           YS         NA + P GK
Sbjct: 298 YSWAVDIEKQRNAKSTPHGK 317

UDP-galactose transporter that transports UDP-galactose, UDP-glucose and GDP-fucose.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXL8|Y1689_ARATH Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 4/99 (4%)

Query: 1   VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMI- 59
           V  N S F+ IG+ + V++QVLGH+KT LVL  G++   ++  +   +LG+++AV GM+ 
Sbjct: 234 VSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL-RDPFDWRNILGILVAVIGMVV 292

Query: 60  --WYSNASTKPGGKERRSSLPTTRPQKHGNLGESNEHDG 96
             +Y +  T+    E  + LP  +  +   L  +    G
Sbjct: 293 YSYYCSIETQQKASETSTQLPQMKESEKDPLIAAENGSG 331

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
224062856	336	predicted protein [Populus trichocarpa]	1.0	0.291	0.868	1e-43
224085186	335	predicted protein [Populus trichocarpa]	1.0	0.292	0.878	2e-43
449446393	335	PREDICTED: UDP-galactose transporter 2-l	1.0	0.292	0.858	5e-42
359493159	335	PREDICTED: UDP-galactose transporter 2-l	1.0	0.292	0.848	2e-41
296082532	335	unnamed protein product [Vitis vinifera]	1.0	0.292	0.828	1e-39
225438501	337	PREDICTED: UDP-galactose transporter 2-l	1.0	0.290	0.828	1e-39
21595054	335	unknown [Arabidopsis thaliana]	0.989	0.289	0.795	1e-38
18399097	335	nucleotide-sugar transporter-like protei	0.989	0.289	0.795	1e-38
297846380	335	hypothetical protein ARALYDRAFT_473556 [	0.989	0.289	0.795	1e-38
15234794	335	Nucleotide-sugar transporter family prot	0.989	0.289	0.765	9e-38

>gi|224062856|ref|XP_002300904.1| predicted protein [Populus trichocarpa] gi|222842630|gb|EEE80177.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/99 (86%), Positives = 91/99 (91%), Gaps = 1/99 (1%)

Query: 1   VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
           VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGF FFGK+GLNLHVVLGMIIAV GM+W
Sbjct: 238 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGKDGLNLHVVLGMIIAVVGMVW 297

Query: 61  YSNASTKPGGKERRS-SLPTTRPQKHGNLGESNEHDGKV 98
           Y NAS+KPGGKER S SLPT+RPQK  NL ES+EHDGKV
Sbjct: 298 YGNASSKPGGKERWSLSLPTSRPQKQSNLSESDEHDGKV 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085186|ref|XP_002307514.1| predicted protein [Populus trichocarpa] gi|222856963|gb|EEE94510.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/99 (87%), Positives = 91/99 (91%), Gaps = 1/99 (1%)

Query: 1   VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
           VGTNLSQFICIGRFTAVSFQVLGHMKT+LVLIMGF FFGK+GLNLHVVLGM IAV GMIW
Sbjct: 237 VGTNLSQFICIGRFTAVSFQVLGHMKTVLVLIMGFFFFGKDGLNLHVVLGMTIAVVGMIW 296

Query: 61  YSNASTKPGGKERRS-SLPTTRPQKHGNLGESNEHDGKV 98
           YSNAS+KPGGKERRS SLPT+R QK  NL ESNEHDGKV
Sbjct: 297 YSNASSKPGGKERRSLSLPTSRQQKPSNLSESNEHDGKV 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446393|ref|XP_004140956.1| PREDICTED: UDP-galactose transporter 2-like [Cucumis sativus]

 Score =  174 bits (441), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 85/99 (85%), Positives = 89/99 (89%), Gaps = 1/99 (1%)

Query: 1   VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
           VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGF FFGKEGLN+ VVLGMIIAV GMIW
Sbjct: 237 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGKEGLNMQVVLGMIIAVIGMIW 296

Query: 61  YSNASTKPGGKERRS-SLPTTRPQKHGNLGESNEHDGKV 98
           Y NAS+KPGGKERRS +LPT R QKHG L +S EHDGKV
Sbjct: 297 YGNASSKPGGKERRSHTLPTARQQKHGGLTDSAEHDGKV 335

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493159|ref|XP_003634527.1| PREDICTED: UDP-galactose transporter 2-like [Vitis vinifera] gi|296081216|emb|CBI18242.3| unnamed protein product [Vitis vinifera]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/99 (84%), Positives = 90/99 (90%), Gaps = 1/99 (1%)

Query: 1   VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
           VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGF FFGKEGLNL VVLGMIIAV GM+W
Sbjct: 237 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGKEGLNLQVVLGMIIAVVGMMW 296

Query: 61  YSNASTKPGGKERRS-SLPTTRPQKHGNLGESNEHDGKV 98
           Y NAS+KPGGKER S SLPT++ QKHG L ES+EHDGK+
Sbjct: 297 YGNASSKPGGKERWSHSLPTSKQQKHGGLSESSEHDGKI 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082532|emb|CBI21537.3| unnamed protein product [Vitis vinifera]

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/99 (82%), Positives = 87/99 (87%), Gaps = 1/99 (1%)

Query: 1   VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
           VGTNLSQFICIGRFTAVSFQV+GHMKTILVLI+GFLFFGKEGLNLHVVLGMIIAV GMIW
Sbjct: 237 VGTNLSQFICIGRFTAVSFQVIGHMKTILVLILGFLFFGKEGLNLHVVLGMIIAVVGMIW 296

Query: 61  YSNASTKPGGKERRS-SLPTTRPQKHGNLGESNEHDGKV 98
           Y NAS+KPGGKERRS +LP  + QK   L ES E DGKV
Sbjct: 297 YGNASSKPGGKERRSPALPINKSQKTDGLSESTEIDGKV 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438501|ref|XP_002278813.1| PREDICTED: UDP-galactose transporter 2-like [Vitis vinifera]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/99 (82%), Positives = 87/99 (87%), Gaps = 1/99 (1%)

Query: 1   VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
           VGTNLSQFICIGRFTAVSFQV+GHMKTILVLI+GFLFFGKEGLNLHVVLGMIIAV GMIW
Sbjct: 239 VGTNLSQFICIGRFTAVSFQVIGHMKTILVLILGFLFFGKEGLNLHVVLGMIIAVVGMIW 298

Query: 61  YSNASTKPGGKERRS-SLPTTRPQKHGNLGESNEHDGKV 98
           Y NAS+KPGGKERRS +LP  + QK   L ES E DGKV
Sbjct: 299 YGNASSKPGGKERRSPALPINKSQKTDGLSESTEIDGKV 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21595054|gb|AAM66068.1| unknown [Arabidopsis thaliana]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/98 (79%), Positives = 88/98 (89%), Gaps = 1/98 (1%)

Query: 1   VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
           +GTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGF FFG+EGLNLHVV+GMIIAV GMIW
Sbjct: 237 IGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGREGLNLHVVVGMIIAVLGMIW 296

Query: 61  YSNASTKPGGKERRS-SLPTTRPQKHGNLGESNEHDGK 97
           Y NAS+KPGGKERR+ SLPTTR QK G   +S++++ K
Sbjct: 297 YGNASSKPGGKERRNYSLPTTRQQKLGAASDSDDNEDK 334

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399097|ref|NP_564433.1| nucleotide-sugar transporter-like protein [Arabidopsis thaliana] gi|10086480|gb|AAG12540.1|AC015446_21 Unknown protein [Arabidopsis thaliana] gi|10092449|gb|AAG12852.1|AC079286_9 unknown protein; 21747-23353 [Arabidopsis thaliana] gi|193788740|gb|ACF20469.1| At1g34020 [Arabidopsis thaliana] gi|332193537|gb|AEE31658.1| nucleotide-sugar transporter-like protein [Arabidopsis thaliana]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/98 (79%), Positives = 88/98 (89%), Gaps = 1/98 (1%)

Query: 1   VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
           +GTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGF FFG+EGLNLHVV+GMIIAV GMIW
Sbjct: 237 IGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGREGLNLHVVVGMIIAVLGMIW 296

Query: 61  YSNASTKPGGKERRS-SLPTTRPQKHGNLGESNEHDGK 97
           Y NAS+KPGGKERR+ SLPTTR QK G   +S++++ K
Sbjct: 297 YGNASSKPGGKERRNYSLPTTRQQKLGAASDSDDNEDK 334

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846380|ref|XP_002891071.1| hypothetical protein ARALYDRAFT_473556 [Arabidopsis lyrata subsp. lyrata] gi|297336913|gb|EFH67330.1| hypothetical protein ARALYDRAFT_473556 [Arabidopsis lyrata subsp. lyrata]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/98 (79%), Positives = 88/98 (89%), Gaps = 1/98 (1%)

Query: 1   VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
           +GTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGF FFG+EGLNLHVV+GMIIAV GMIW
Sbjct: 237 IGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGREGLNLHVVVGMIIAVLGMIW 296

Query: 61  YSNASTKPGGKERRS-SLPTTRPQKHGNLGESNEHDGK 97
           Y NAS+KPGGKERR+ SLPTTR QK G   +S++++ K
Sbjct: 297 YGNASSKPGGKERRNYSLPTTRQQKLGAASDSDDNEDK 334

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234794|ref|NP_192719.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana] gi|4538911|emb|CAB39648.1| hypothetical protein [Arabidopsis thaliana] gi|7267676|emb|CAB78104.1| hypothetical protein [Arabidopsis thaliana] gi|38603966|gb|AAR24728.1| At4g09810 [Arabidopsis thaliana] gi|332657401|gb|AEE82801.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 75/98 (76%), Positives = 86/98 (87%), Gaps = 1/98 (1%)

Query: 1   VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
           +GTNLSQFICIGRFTAVSFQVLGHMKTILVL+MGF FF ++GLNLHV+LGMIIAV GMIW
Sbjct: 237 IGTNLSQFICIGRFTAVSFQVLGHMKTILVLVMGFFFFDRDGLNLHVILGMIIAVLGMIW 296

Query: 61  YSNASTKPGGKERRS-SLPTTRPQKHGNLGESNEHDGK 97
           Y NAS+KPGGKE+++ SLPTTR QK G   +S+EH  K
Sbjct: 297 YGNASSKPGGKEKKNYSLPTTRQQKLGATSDSDEHRDK 334

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
TAIR|locus:2009076	335	AT1G34020 [Arabidopsis thalian	0.989	0.289	0.795	1.5e-37
TAIR|locus:2118514	335	AT4G09810 [Arabidopsis thalian	0.989	0.289	0.765	1.3e-36
TAIR|locus:2122467	337	NST-K1 "nucleotide sugar trans	0.969	0.281	0.787	3.5e-36
TAIR|locus:2199557	348	AT1G21070 [Arabidopsis thalian	0.724	0.204	0.5	2.5e-13
TAIR|locus:2030076	347	AT1G76670 [Arabidopsis thalian	0.683	0.193	0.493	6.9e-13
TAIR|locus:2162271	350	AT5G42420 [Arabidopsis thalian	0.591	0.165	0.542	7.1e-13
TAIR|locus:2064316	353	AT2G30460 "AT2G30460" [Arabido	0.867	0.240	0.379	5.4e-10
TAIR|locus:2033097	357	AT1G06890 [Arabidopsis thalian	0.785	0.215	0.370	5.4e-09
TAIR|locus:504955965	342	AT2G28315 [Arabidopsis thalian	0.969	0.277	0.349	3.7e-08
UNIPROTKB|F1PX77	158	SLC35E3 "Uncharacterized prote	0.755	0.468	0.298	2.4e-05

TAIR|locus:2009076 AT1G34020 [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 78/98 (79%), Positives = 88/98 (89%)

Query:     1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
             +GTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGF FFG+EGLNLHVV+GMIIAV GMIW
Sbjct:   237 IGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGREGLNLHVVVGMIIAVLGMIW 296

Query:    61 YSNASTKPGGKERRS-SLPTTRPQKHGNLGESNEHDGK 97
             Y NAS+KPGGKERR+ SLPTTR QK G   +S++++ K
Sbjct:   297 YGNASSKPGGKERRNYSLPTTRQQKLGAASDSDDNEDK 334

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2118514 AT4G09810 [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 75/98 (76%), Positives = 86/98 (87%)

Query:     1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
             +GTNLSQFICIGRFTAVSFQVLGHMKTILVL+MGF FF ++GLNLHV+LGMIIAV GMIW
Sbjct:   237 IGTNLSQFICIGRFTAVSFQVLGHMKTILVLVMGFFFFDRDGLNLHVILGMIIAVLGMIW 296

Query:    61 YSNASTKPGGKERRS-SLPTTRPQKHGNLGESNEHDGK 97
             Y NAS+KPGGKE+++ SLPTTR QK G   +S+EH  K
Sbjct:   297 YGNASSKPGGKEKKNYSLPTTRQQKLGATSDSDEHRDK 334

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2122467 NST-K1 "nucleotide sugar transporter-KT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 78/99 (78%), Positives = 86/99 (86%)

Query:     1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
             VGTNLSQFICIGRFTAVSFQVLGHMKTILVL++GF FFGKEGLNL VVLGM+IA+ GMIW
Sbjct:   242 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLVLGFTFFGKEGLNLQVVLGMLIAILGMIW 301

Query:    61 YSNASTKPGGKERRS-SLPTTRPQKHGNLGESNEHDGKV 98
             Y NAS+KPGGKERRS S+P T+ QK   L E+NE D KV
Sbjct:   302 YGNASSKPGGKERRSLSIPITKSQK---LSETNESDEKV 337

GO:0005886 "plasma membrane" evidence=ISM

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IDA

GO:0015780 "nucleotide-sugar transport" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2199557 AT1G21070 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 37/74 (50%), Positives = 52/74 (70%)

Query:     4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSN 63
             N+SQ++CIGRF+A SFQVLGHMKT+ VL +G+L F  E +    + GM++AV GM+ YS 
Sbjct:   243 NISQYLCIGRFSATSFQVLGHMKTVCVLTLGWLIFDSE-MTFKNIAGMVLAVVGMVIYSW 301

Query:    64 ASTKPGGKERRSSL 77
             A      K+R+S +
Sbjct:   302 AVELE--KQRKSKV 313

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2030076 AT1G76670 [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 6.9e-13, P = 6.9e-13
 Identities = 38/77 (49%), Positives = 50/77 (64%)

Query:     4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS- 62
             N+SQ++CIGRF+A SFQVLGHMKT+ VL +G+L F  E +    + GM IA+ GM+ YS 
Sbjct:   242 NISQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSE-MTFKNIAGMAIAIVGMVIYSW 300

Query:    63 --------NASTKPGGK 71
                     NA + P GK
Sbjct:   301 AVDIEKQRNAKSTPHGK 317

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005457 "GDP-fucose transmembrane transporter activity" evidence=IDA

GO:0005459 "UDP-galactose transmembrane transporter activity" evidence=IDA

GO:0005460 "UDP-glucose transmembrane transporter activity" evidence=IDA

GO:0015783 "GDP-fucose transport" evidence=IDA

GO:0015786 "UDP-glucose transport" evidence=IDA

GO:0072334 "UDP-galactose transmembrane transport" evidence=IDA

GO:0009624 "response to nematode" evidence=IEP

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2162271 AT5G42420 [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query:     4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62
             N+SQ++CIGRF+AVSFQV+GHMKT+ +L +G+L F    +    V GMI+A+ GM+ YS
Sbjct:   243 NISQYLCIGRFSAVSFQVIGHMKTVCILTLGWLLFDS-AMTFKNVAGMIVAIVGMVIYS 300

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2064316 AT2G30460 "AT2G30460" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 5.4e-10, P = 5.4e-10
 Identities = 33/87 (37%), Positives = 51/87 (58%)

Query:     1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
             V  N S F+ IG+ + V++QVLGH+KT LVL  G+L   K+  +   +LG+++AV GM+ 
Sbjct:   234 VSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYLLL-KDAFSWRNILGILVAVIGMVL 292

Query:    61 YSNASTKPGGKERRSSLPTTRPQKHGN 87
             YS   T    +++ +   T  PQ   N
Sbjct:   293 YSYYCTLET-QQKATETSTQLPQMDEN 318

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2033097 AT1G06890 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 5.4e-09, P = 5.4e-09
 Identities = 30/81 (37%), Positives = 49/81 (60%)

Query:     1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
             V  N S F+ IG+ + V++QVLGH+KT LVL  G++   ++  +   +LG+++AV GM+ 
Sbjct:   234 VSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL-RDPFDWRNILGILVAVIGMVV 292

Query:    61 YS---NASTKPGGKERRSSLP 78
             YS   +  T+    E  + LP
Sbjct:   293 YSYYCSIETQQKASETSTQLP 313

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:504955965 AT2G28315 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 36/103 (34%), Positives = 56/103 (54%)

Query:     1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
             V  N S F+ IG+ + V++QVLGH+KT LVL  G+     +      + G++IAV GM+ 
Sbjct:   234 VSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYTLL-HDPFTPRNIAGILIAVLGMLL 292

Query:    61 YSNASTKPGGKERRSSLPTTRPQKHGN----LGESNE--HDGK 97
             YS   +    K +++S  +T   K  +    LG+ NE  H+ K
Sbjct:   293 YSYFCSV-ASKSKQASSDSTFLGKDRDTTPLLGQENENHHEAK 334

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|F1PX77 SLC35E3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 23/77 (29%), Positives = 44/77 (57%)

Query:     4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSN 63
             NLS +  IG  + V++ + GH K  + L  G++ F K+ L+++  LG++  +FG++ Y++
Sbjct:    83 NLSIYWIIGNTSPVTYNMFGHFKFCITLFGGYVLF-KDPLSVNQGLGILCTLFGILAYTH 141

Query:    64 --ASTKPGGKERRSSLP 78
                S + G K +    P
Sbjct:   142 FKLSEQEGSKSKLVQRP 158

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	98
pfam03151	149	pfam03151, TPT, Triose-phosphate Transporter famil	5e-15
PTZ00343	350	PTZ00343, PTZ00343, triose or hexose phosphate/pho	1e-04

>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family

 Score = 65.3 bits (160), Expect = 5e-15
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 1   VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW 60
              NLS F  +GR + ++  V G +K ++V+++  + FG   +    +LG+ IA+ G++ 
Sbjct: 88  FLYNLSAFGLLGRTSPLTSSVAGTVKRVVVIVLSVIIFGDP-VTFLNILGLAIAILGVVL 146

Query: 61  YSN 63
           YS 
Sbjct: 147 YSY 149

This family includes transporters with a specificity for triose phosphate. Length = 149

>gnl|CDD|240371 PTZ00343, PTZ00343, triose or hexose phosphate/phosphate translocator; Provisional

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 4   NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS 62
           N   F C+G+   V+  V   +K +++++   + F  + + L   LGM +A+ G + YS
Sbjct: 290 NEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQ-VTLLGYLGMAVAILGALLYS 347

Length = 350

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.76
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.67
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.36
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.33
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.23
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.13
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.93
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.86
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.64
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.4
PLN00411	358	nodulin MtN21 family protein; Provisional	97.95
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	97.83
KOG1580	337	consensus UDP-galactose transporter related protei	97.62
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.39
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.33
KOG1581	327	consensus UDP-galactose transporter related protei	97.33
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.27
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.15
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.49
COG2076	106	EmrE Membrane transporters of cations and cationic	96.43
PRK11431	105	multidrug efflux system protein; Provisional	96.42
PRK15430	296	putative chloramphenical resistance permease RarD;	96.4
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.34
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.33
PRK11689	295	aromatic amino acid exporter; Provisional	96.32
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	96.27
PRK15430	296	putative chloramphenical resistance permease RarD;	96.24
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.22
PF13536	113	EmrE: Multidrug resistance efflux transporter	96.19
PRK11272	292	putative DMT superfamily transporter inner membran	96.17
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	96.14
KOG3912	372	consensus Predicted integral membrane protein [Gen	96.12
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.03
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	95.94
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	95.94
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	95.92
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	95.83
PLN00411	358	nodulin MtN21 family protein; Provisional	95.5
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	95.4
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	94.62
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	94.56
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	94.46
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	94.43
COG0697	292	RhaT Permeases of the drug/metabolite transporter	94.43
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	93.89
COG2510	140	Predicted membrane protein [Function unknown]	93.07
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	92.91
KOG1582	367	consensus UDP-galactose transporter related protei	92.74
PRK11689	295	aromatic amino acid exporter; Provisional	92.66
COG0697	292	RhaT Permeases of the drug/metabolite transporter	92.44
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	92.13
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	92.11
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	91.01
KOG2765	416	consensus Predicted membrane protein [Function unk	90.33
PRK11272	292	putative DMT superfamily transporter inner membran	90.32
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	90.15
COG2962	293	RarD Predicted permeases [General function predict	88.04
PF06679	163	DUF1180: Protein of unknown function (DUF1180); In	83.57
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	82.78
KOG2766	336	consensus Predicted membrane protein [Function unk	80.91

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.76  E-value=1.4e-19  Score=140.12  Aligned_cols=71  Identities=38%  Similarity=0.668  Sum_probs=67.9

Q ss_pred             CeehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcC
Q 045440            1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKE   72 (98)
Q Consensus         1 f~lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~   72 (98)
                      |++|+++|+++++|||+||+|+|++|++++++.|+++|+ +|+|+.|++|++++++|+++|+++|.++++++
T Consensus       246 f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~-~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~~  316 (316)
T KOG1441|consen  246 FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFG-NPVTFLNALGYAIAILGVFLYSRAKLKEKKGK  316 (316)
T ss_pred             HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeec-CCCchhhHHHHHHHHHHHHHHHHHhhhhhccC
Confidence            578999999999999999999999999999999999999 89999999999999999999999999888653

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.67  E-value=2.5e-17  Score=111.99  Aligned_cols=62  Identities=34%  Similarity=0.690  Sum_probs=60.3

Q ss_pred             CeehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHh
Q 045440            1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSN   63 (98)
Q Consensus         1 f~lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~   63 (98)
                      |++|+++|+++++|||+|++|+|++|+++++++|+++|| |++|..+++|++++++|.++|+|
T Consensus        92 ~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~-~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   92 FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFG-EPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcC-CcCCHHHHHHHHHHHHHHheeeC
Confidence            468999999999999999999999999999999999999 99999999999999999999986

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.36  E-value=5.2e-13  Score=103.51  Aligned_cols=64  Identities=25%  Similarity=0.498  Sum_probs=61.6

Q ss_pred             CeehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhh
Q 045440            1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAS   65 (98)
Q Consensus         1 f~lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k   65 (98)
                      |++|.++|++++++||+|++|.|++|.++++++|+++|| |++|+.+++|.+++++|.++|++.|
T Consensus       287 ~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~g-e~lt~~~~iG~~lii~Gv~lYs~~k  350 (350)
T PTZ00343        287 YLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQ-TQVTLLGYLGMAVAILGALLYSLFK  350 (350)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhC-CCCchHhHHHHHHHHHHHHHHhhcC
Confidence            467999999999999999999999999999999999999 9999999999999999999999875

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=6.4e-13  Score=102.84  Aligned_cols=72  Identities=25%  Similarity=0.519  Sum_probs=66.2

Q ss_pred             CeehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcCC
Q 045440            1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKER   73 (98)
Q Consensus         1 f~lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~~   73 (98)
                      |.+|+++|||...+||+|++++| +|+.+.+.+|++.++|.++++.+++|+.+.++|..+|++++.++++.+.
T Consensus       239 f~isy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~~  310 (314)
T KOG1444|consen  239 FGISYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQPP  310 (314)
T ss_pred             HHHHHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCCC
Confidence            46899999999999999999999 9999999999998887899999999999999999999999988776543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.23  E-value=7.6e-12  Score=94.03  Aligned_cols=69  Identities=26%  Similarity=0.498  Sum_probs=63.7

Q ss_pred             ehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcC
Q 045440            3 TNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKE   72 (98)
Q Consensus         3 lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~   72 (98)
                      .|.+.|.+++++||+|+++.+.+|.+..+++|++++| |++|..+++|.+++++|..+|++.|.++++.|
T Consensus       234 ~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lg-e~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~~  302 (302)
T TIGR00817       234 YQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFG-TKISPQQVFGTGIAIAGVFLYSRVKAQKPKPK  302 (302)
T ss_pred             HHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcC-CCCchhHHHHHHHHHHHHHHHHHHhccCcCCC
Confidence            4677788999999999999999999999999999999 99999999999999999999999887766543

specificities overlap.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=1.3e-12  Score=100.56  Aligned_cols=77  Identities=12%  Similarity=0.115  Sum_probs=70.7

Q ss_pred             CeehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcCCCCCCC
Q 045440            1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKERRSSLP   78 (98)
Q Consensus         1 f~lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~~~~~~~   78 (98)
                      |.+|+.++|.|+.||||||+|.|.+|.+.+.++++.+++ |..+...|-|..+.+.|+.+|+++|-++.+++.+.++|
T Consensus       266 F~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~-E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~s~  342 (347)
T KOG1442|consen  266 FAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYS-ETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQRSP  342 (347)
T ss_pred             HHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHH-HHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCCCc
Confidence            678999999999999999999999999999999999999 99999999999999999999999998877766654444

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.93  E-value=1.8e-09  Score=81.80  Aligned_cols=65  Identities=22%  Similarity=0.485  Sum_probs=61.0

Q ss_pred             hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCC
Q 045440            4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPG   69 (98)
Q Consensus         4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~   69 (98)
                      +...|.+++++||+|.++++++|+++.+++|+++|| +++++.+++|+++.++|..+|++.|.|++
T Consensus       239 ~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~-~~~~~~~~~G~~lv~~g~~~~~~~~~k~~  303 (303)
T PF08449_consen  239 QFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFG-HPLSPLQWIGIVLVFAGIFLYSYAKKKKN  303 (303)
T ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcC-CcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence            455688899999999999999999999999999999 99999999999999999999999988764

; GO: 0055085 transmembrane transport

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.86  E-value=1.7e-09  Score=84.17  Aligned_cols=62  Identities=21%  Similarity=0.457  Sum_probs=58.6

Q ss_pred             CeehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHh
Q 045440            1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSN   63 (98)
Q Consensus         1 f~lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~   63 (98)
                      |++-.++|.+..+||.+|.+++|++|++++++++.++.+ +.++..||.|..+++.|...|.+
T Consensus       254 F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~-d~ls~lN~~Gl~i~~agi~~~~~  315 (349)
T KOG1443|consen  254 FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILK-DQLSLLNWLGLAICLAGILLHRN  315 (349)
T ss_pred             HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHHHHhcc
Confidence            456789999999999999999999999999999999999 99999999999999999999944

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.64  E-value=1.6e-08  Score=76.63  Aligned_cols=72  Identities=15%  Similarity=0.451  Sum_probs=65.8

Q ss_pred             CeehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcCC
Q 045440            1 VGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKER   73 (98)
Q Consensus         1 f~lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~~   73 (98)
                      |+..+|+-||+..||+.|++++|.+++.++.+.|.++|+ +|.+.+.+..+++.......|+++|.+++|.++
T Consensus       235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffd-ap~nf~si~sillGflsg~iYavaks~k~q~q~  306 (309)
T COG5070         235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFD-APVNFLSIFSILLGFLSGAIYAVAKSKKQQNQK  306 (309)
T ss_pred             hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            345678899999999999999999999999999999999 999999999999999999999999987665443

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.40  E-value=4.1e-07  Score=70.41  Aligned_cols=68  Identities=18%  Similarity=0.489  Sum_probs=61.2

Q ss_pred             hhhHHhh-------cccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcCC
Q 045440            5 LSQFICI-------GRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKER   73 (98)
Q Consensus         5 ~s~f~~i-------~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~~   73 (98)
                      +.+|.|+       .+||+||.+++=++|+.+.+++|++.|. ||+|+..|+|.++...|+++|+....+.++.|.
T Consensus       250 L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~-Npft~~h~lGa~lVF~Gt~~fa~~~~~~~~~k~  324 (330)
T KOG1583|consen  250 LTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFE-NPFTPWHWLGAALVFFGTLLFANVWNHPKATKG  324 (330)
T ss_pred             HHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEec-CCCCHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence            4566666       7899999999999999999999999999 999999999999999999999999888774443

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.95  E-value=2.3e-05  Score=61.58  Aligned_cols=85  Identities=11%  Similarity=0.214  Sum_probs=65.7

Q ss_pred             hHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcCCCCCCCCCCCcccC
Q 045440            7 QFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKERRSSLPTTRPQKHG   86 (98)
Q Consensus         7 ~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~~~~~~~~~~~~~~~   86 (98)
                      .++++++.+|...++...+--+..+++|++++| |++++.+++|.++.++|..+-++.|.+|.+++..   .-+   |.+
T Consensus       273 w~~~v~~~ga~~as~~~~L~PV~a~llg~l~Lg-E~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~---~~~---~~~  345 (358)
T PLN00411        273 HSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLN-DSLYLGCLIGGILITLGFYAVMWGKANEEKDQLL---SFS---GKE  345 (358)
T ss_pred             HHHHHhccCchHHHHHHhHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhccc---Ccc---ccc
Confidence            456899999999999999999999999999999 9999999999999999999987655444333222   111   333


Q ss_pred             CCCC-CCcCCCCC
Q 045440           87 NLGE-SNEHDGKV   98 (98)
Q Consensus        87 ~~~~-~~~~~~~~   98 (98)
                      .+|. .+++||.|
T Consensus       346 ~~~~~~~~~~~~~  358 (358)
T PLN00411        346 KTPLLLNGKNDQI  358 (358)
T ss_pred             cchhhhhcccccC
Confidence            3454 66666654

>TIGR00803 nst UDP-galactose transporter

Probab=97.83  E-value=3.8e-06  Score=60.75  Aligned_cols=56  Identities=14%  Similarity=0.193  Sum_probs=52.9

Q ss_pred             hhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHH
Q 045440            5 LSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWY   61 (98)
Q Consensus         5 ~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Y   61 (98)
                      ++.++++++.++++.+++..++.++..++|+++|| ++++...++|..+.+.|.++|
T Consensus       167 ~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~-~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       167 LCIGGVVRYADNTTKSFVTALSIILSTLASVRLFD-AKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             ceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHeeeEeC
Confidence            45678899999999999999999999999999999 999999999999999998877

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.62  E-value=6.9e-05  Score=57.52  Aligned_cols=56  Identities=13%  Similarity=0.282  Sum_probs=51.8

Q ss_pred             hhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHH
Q 045440            5 LSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWY   61 (98)
Q Consensus         5 ~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Y   61 (98)
                      .+.|..+..-+|||.+|+-+.++...+++|+++|+ +|++.++|+|..+...|...-
T Consensus       256 ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~-npls~rQwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  256 WFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFN-NPLSGRQWLGTVLVFSALTAD  311 (337)
T ss_pred             HHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHhhhH
Confidence            46788889999999999999999999999999999 999999999999999887654

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.39  E-value=0.00046  Score=51.96  Aligned_cols=60  Identities=22%  Similarity=0.340  Sum_probs=54.7

Q ss_pred             hHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcC
Q 045440            7 QFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTK   67 (98)
Q Consensus         7 ~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~   67 (98)
                      .++.+++.+|...++...+--+..+++|++++| |++++.+++|.++.++|.+.++....+
T Consensus       226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lg-E~~~~~~~iG~~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLG-ETLTLIQWLALGAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence            356789999999999999999999999999999 999999999999999999999865433

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.33  E-value=0.00025  Score=53.07  Aligned_cols=65  Identities=22%  Similarity=0.383  Sum_probs=59.8

Q ss_pred             ehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCC
Q 045440            3 TNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKP   68 (98)
Q Consensus         3 lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~   68 (98)
                      -|...|......+|.|++|....|.+.+-++++++++ .+++..+|+++.+.++|..+........
T Consensus        30 qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~-r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   30 QNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLK-RRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHH-cccchhhHHHHHHHHHHHheeecCCccc
Confidence            3778899999999999999999999999999999999 9999999999999999999977765544

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.33  E-value=0.00014  Score=56.92  Aligned_cols=64  Identities=22%  Similarity=0.391  Sum_probs=58.7

Q ss_pred             hhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCC
Q 045440            5 LSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPG   69 (98)
Q Consensus         5 ~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~   69 (98)
                      +..|..|.+-.|+|++++-..|++..+.+|+++|| ++++..+++|+.+.+.|..+=.+.|.+++
T Consensus       256 ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~-h~~s~~q~~g~~iVFg~i~l~~~~k~~~~  319 (327)
T KOG1581|consen  256 LFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFG-HPLSSEQWLGVLIVFGGIFLEILLKKKKN  319 (327)
T ss_pred             heehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhC-CccchhhccCeeeehHHHHHHHHHHHhcc
Confidence            35688899999999999999999999999999999 99999999999999999998888887733

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.27  E-value=0.00069  Score=43.19  Aligned_cols=58  Identities=24%  Similarity=0.531  Sum_probs=52.8

Q ss_pred             hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440            4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS   62 (98)
Q Consensus         4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys   62 (98)
                      +.+.+..++++++-..++...+--+...++++++++ +++++.+++|+.+.+.|..+-+
T Consensus        68 ~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~-e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   68 YLLYFYALKYISASIVSILQYLSPVFAAILGWLFLG-ERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            445677789999999999999999999999999999 9999999999999999998754

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.15  E-value=0.00036  Score=54.76  Aligned_cols=62  Identities=19%  Similarity=0.343  Sum_probs=53.8

Q ss_pred             HhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCc
Q 045440            9 ICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGK   71 (98)
Q Consensus         9 ~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~   71 (98)
                      .++..+||+.+++.-..-....+++++++|| .++++.-++|.++.++|.++|+....++.++
T Consensus       252 ~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~-~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~  313 (334)
T PF06027_consen  252 IVLRMSSATFFNLSLLTSDFYALIIDIFFFG-YKFSWLYILAFALIIIGFVVYNLAESPEEEA  313 (334)
T ss_pred             HHHHhCccceeehHHHHhhHHHHHHHHHhcC-ccccHHHHHHHHHHHHHhheEEccCCccccc
Confidence            3578999999999777778888999999999 9999999999999999999999876544433

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.49  E-value=0.0045  Score=41.46  Aligned_cols=46  Identities=20%  Similarity=0.597  Sum_probs=41.4

Q ss_pred             cchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440           16 AVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS   62 (98)
Q Consensus        16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys   62 (98)
                      .+.|++..-+-.+.+.++|+++|+ |++++.+++|+.+.++|...-+
T Consensus        57 ~iAYavw~GlG~v~~~l~g~~~f~-e~~~~~~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         57 GIAYAIWSGVGIVLISLLSWGFFG-QRLDLPAIIGMMLICAGVLVIN  102 (110)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHh
Confidence            457888777888899999999999 9999999999999999999854

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.43  E-value=0.0057  Score=41.06  Aligned_cols=47  Identities=26%  Similarity=0.490  Sum_probs=42.7

Q ss_pred             cchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHh
Q 045440           16 AVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSN   63 (98)
Q Consensus        16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~   63 (98)
                      .+.|+|..-+=.+.+.+.|+++|+ |++++.+++|+.+.++|...-+.
T Consensus        57 gvAYAiW~GiG~v~~~l~g~~~f~-E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          57 GVAYAIWTGIGIVGTALVGVLLFG-ESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-CcCCHHHHHHHHHHHHHHHHhhh
Confidence            467889999999999999999999 99999999999999999987543

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.42  E-value=0.0051  Score=40.92  Aligned_cols=45  Identities=20%  Similarity=0.362  Sum_probs=42.0

Q ss_pred             cchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHH
Q 045440           16 AVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWY   61 (98)
Q Consensus        16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Y   61 (98)
                      .++|++..-+-.+.+.++|+++|+ |++++.+++|+.+.++|...-
T Consensus        56 gvaYAvW~GiG~v~~~lig~~~f~-e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         56 GTAYAVWTGIGAVGAAITGIVLLG-ESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHhh
Confidence            578899999999999999999999 999999999999999999874

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.40  E-value=0.0056  Score=46.12  Aligned_cols=60  Identities=8%  Similarity=0.183  Sum_probs=52.1

Q ss_pred             hhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhc
Q 045440            6 SQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAST   66 (98)
Q Consensus         6 s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~   66 (98)
                      +-+..+++.+|-+.++...+.-+..+++|++++| |++++.+++|+++.++|..+....-.
T Consensus       229 ~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~-E~~~~~~~~G~~lI~~~~~v~~~~~~  288 (296)
T PRK15430        229 CFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYG-EKPGADKMVTFAFIWVALAIFVMDAI  288 (296)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455668999999999999999999999999999 99999999999999888776665543

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.34  E-value=0.0063  Score=40.82  Aligned_cols=45  Identities=24%  Similarity=0.560  Sum_probs=41.3

Q ss_pred             cchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHH
Q 045440           16 AVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWY   61 (98)
Q Consensus        16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Y   61 (98)
                      .++|+|..-+-.+.+.++|+++|+ |++++.+++|+.+.+.|...-
T Consensus        62 gvAYAvW~GiG~v~~~~ig~~~f~-e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         62 SVAYALWGGFGIAATLAAGWILFG-QRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHh
Confidence            467889888999999999999999 999999999999999999863

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=96.33  E-value=0.0056  Score=40.69  Aligned_cols=43  Identities=12%  Similarity=0.305  Sum_probs=37.1

Q ss_pred             cchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHH
Q 045440           16 AVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW   60 (98)
Q Consensus        16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~   60 (98)
                      ...|.+.. +--+.+.++|+++|| |++|+.+++|+++.++|..+
T Consensus        64 g~Ay~~~~-l~~v~~~~~~~l~f~-E~ls~~~~~Gi~lii~Gv~~  106 (111)
T PRK15051         64 GIAYPMLS-LNFVWVTLAAVKLWH-EPVSPRHWCGVAFIIGGIVI  106 (111)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHH
Confidence            34555655 777889999999999 99999999999999999876

>PRK11689 aromatic amino acid exporter; Provisional

Probab=96.32  E-value=0.0076  Score=45.38  Aligned_cols=56  Identities=11%  Similarity=0.093  Sum_probs=51.2

Q ss_pred             hhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440            6 SQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS   62 (98)
Q Consensus         6 s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys   62 (98)
                      .-++.+++.+|...++...+.-+..+++|++++| |++++.+++|.++.+.|..+-.
T Consensus       231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lg-E~~~~~~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLS-TPLSFSFWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhHHHHh
Confidence            3457789999999999999999999999999999 9999999999999999986654

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=96.27  E-value=0.0068  Score=43.92  Aligned_cols=52  Identities=17%  Similarity=0.317  Sum_probs=48.6

Q ss_pred             hhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHH
Q 045440            6 SQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGM   58 (98)
Q Consensus         6 s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~   58 (98)
                      .-+..+++.++.+.++...+.-+...++|++++| |++++.+++|..+.+.|.
T Consensus       208 ~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~-E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       208 LWNKGLTLVDPSAASILALAEPLVALLLGLLILG-ETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhc
Confidence            3566789999999999999999999999999999 999999999999999885

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.24  E-value=0.009  Score=45.02  Aligned_cols=59  Identities=15%  Similarity=0.297  Sum_probs=53.4

Q ss_pred             ehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440            3 TNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS   62 (98)
Q Consensus         3 lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys   62 (98)
                      .+.+-|+.++++++..-++....--+.+.++++++++ |+++..+++|++++++|..+-.
T Consensus        86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~-E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         86 NWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLG-ERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHH
Confidence            3567788889999999999999999999999999999 9999999999999999987643

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.22  E-value=0.01  Score=40.45  Aligned_cols=45  Identities=20%  Similarity=0.482  Sum_probs=40.7

Q ss_pred             cchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHH
Q 045440           16 AVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWY   61 (98)
Q Consensus        16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Y   61 (98)
                      .+.|++..-+-.+.+.++|+++|+ |++++.+++|+.+.++|.+.-
T Consensus        57 siAYavw~GiG~v~~~~ig~~~f~-E~~s~~~~~gi~lIi~GVi~l  101 (120)
T PRK10452         57 GVAYALWEGIGILFITLFSVLLFD-ESLSLMKIAGLTTLVAGIVLI  101 (120)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHh
Confidence            467888777788899999999999 999999999999999999884

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=96.19  E-value=0.018  Score=37.68  Aligned_cols=60  Identities=18%  Similarity=0.322  Sum_probs=48.1

Q ss_pred             hhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcC
Q 045440            6 SQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTK   67 (98)
Q Consensus         6 s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~   67 (98)
                      .-++..+.+++ ...+.-.+--+...++|+++|+ |+++..+++|++++++|.++=.+...+
T Consensus        51 ~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~-er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   51 LFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFK-ERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            33455566665 5557777888899999999999 999999999999999999886665443

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=96.17  E-value=0.014  Score=43.85  Aligned_cols=60  Identities=12%  Similarity=0.151  Sum_probs=53.7

Q ss_pred             hhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhc
Q 045440            6 SQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAST   66 (98)
Q Consensus         6 s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~   66 (98)
                      .-+..+++.++-+.++...+.-+...++|++++| |++|+.+++|.++.+.|.++-+..+.
T Consensus       229 l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~-E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        229 AYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGG-ETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456679999999999999999999999999999 99999999999999999998766433

>TIGR00688 rarD rarD protein

Probab=96.14  E-value=0.0093  Score=43.66  Aligned_cols=56  Identities=14%  Similarity=0.246  Sum_probs=50.5

Q ss_pred             hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHH
Q 045440            4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW   60 (98)
Q Consensus         4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~   60 (98)
                      +.+-|+.++++++-+-++....--+.+.++++++++ |+++..+++|++++++|..+
T Consensus        84 ~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~-Ek~~~~~~l~~~~~~~Gv~l  139 (256)
T TIGR00688        84 WWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLK-ERISRFQFIAVIIATLGVIS  139 (256)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence            455677789999999999999999999999999999 99999999999999999874

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=96.12  E-value=0.0043  Score=48.73  Aligned_cols=64  Identities=19%  Similarity=0.312  Sum_probs=60.2

Q ss_pred             eehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhc
Q 045440            2 GTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAST   66 (98)
Q Consensus         2 ~lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~   66 (98)
                      +.|++...+.+.-||.|-.+.-.++...+-++++..+. |.+...+++|.++.+.|+++|+-.-.
T Consensus       274 ffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~-E~f~llqilGFliLi~Gi~lY~~il~  337 (372)
T KOG3912|consen  274 FFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGW-EYFHLLQILGFLILIMGIILYNQILF  337 (372)
T ss_pred             eeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999999999 99999999999999999999987643

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.03  E-value=0.0061  Score=47.92  Aligned_cols=61  Identities=20%  Similarity=0.369  Sum_probs=55.4

Q ss_pred             hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhh
Q 045440            4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAS   65 (98)
Q Consensus         4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k   65 (98)
                      |+......++||..+.++....-...+.++|+++++ +++++.+++|++++++|..+=...-
T Consensus        93 N~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~-~ry~~~~~~gv~i~i~Gv~lv~~sD  153 (334)
T PF06027_consen   93 NYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLK-RRYSWFHILGVLICIAGVVLVVVSD  153 (334)
T ss_pred             HHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhhhheeeec
Confidence            677777889999999999999999999999999999 9999999999999999998754443

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=95.94  E-value=0.0087  Score=44.92  Aligned_cols=57  Identities=11%  Similarity=0.275  Sum_probs=52.3

Q ss_pred             hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHH
Q 045440            4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWY   61 (98)
Q Consensus         4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Y   61 (98)
                      +...++.++++|+-..+++-..--+.+.++++++++ ++++..+++|++++++|..+-
T Consensus        79 ~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~-e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        79 HVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLG-QEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             HHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHhhh
Confidence            456778889999999999999999999999999999 999999999999999999764

specificities overlap.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=95.94  E-value=0.017  Score=43.57  Aligned_cols=56  Identities=18%  Similarity=0.239  Sum_probs=49.2

Q ss_pred             HhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhh
Q 045440            9 ICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAS   65 (98)
Q Consensus         9 ~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k   65 (98)
                      ..+++..|.+.++...+-=+..+++|++++| |+++..+++|.++.++|..+=.+.+
T Consensus       234 ~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lg-E~~~~~~~iG~~lI~~gv~l~~~~~  289 (299)
T PRK11453        234 TLLGRYETWRVAPLSLLVPVVGLASAALLLD-ERLTGLQFLGAVLIMAGLYINVFGL  289 (299)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHhcch
Confidence            4468889999999999999999999999999 9999999999999999997755443

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=95.92  E-value=0.014  Score=42.27  Aligned_cols=58  Identities=16%  Similarity=0.206  Sum_probs=52.1

Q ss_pred             hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440            4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS   62 (98)
Q Consensus         4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys   62 (98)
                      +.+.|..++++++-.-++.-...-+.+.++++++++ |++++.+++|++++++|..+..
T Consensus        61 ~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~-e~~~~~~~~gi~i~~~Gv~li~  118 (260)
T TIGR00950        61 YVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGK-ERPRKLVLLAAVLGLAGAVLLL  118 (260)
T ss_pred             HHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHcc-CCCcHHHHHHHHHHHHhHHhhc
Confidence            456677889999888889988999999999999999 9999999999999999998865

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=95.83  E-value=0.015  Score=44.02  Aligned_cols=68  Identities=15%  Similarity=0.278  Sum_probs=59.2

Q ss_pred             hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcC
Q 045440            4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKE   72 (98)
Q Consensus         4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~   72 (98)
                      +.++.....+.|-=|+.+.=..|-+.+.++|+++++ .+.++.+++++++..+|.++++..+.++++..
T Consensus        78 ~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~-k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~  145 (303)
T PF08449_consen   78 SVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILG-KRYSRRQYLSVLLITIGVAIFTLSDSSSSSSS  145 (303)
T ss_pred             HHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcC-ccccHHHHHHHHHHHhhHheeeeccccccccc
Confidence            345667778889999999999999999999999999 99999999999999999999998776555433

; GO: 0055085 transmembrane transport

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=95.50  E-value=0.015  Score=45.71  Aligned_cols=59  Identities=19%  Similarity=0.367  Sum_probs=52.6

Q ss_pred             ehhhhHHhhcccCcchhhhhhhHhHHHHhhhhhee------eCCCccchhhHHhHHHHHHHHHHHH
Q 045440            3 TNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLF------FGKEGLNLHVVLGMIIAVFGMIWYS   62 (98)
Q Consensus         3 lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~------fg~~~~t~~~~~G~~i~l~G~~~Ys   62 (98)
                      ++...|+-++.|||..-++....-=+.+.++++++      ++ ++++..+++|++++++|..+=.
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~-er~~~~~~~G~~l~~~Gv~ll~  155 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFK-ERSSVAKVMGTILSLIGALVVI  155 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhc-ccccHHHHHHHHHHHHHHHHHH
Confidence            34466777899999999999999999999999999      68 9999999999999999997644

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=95.40  E-value=0.023  Score=42.31  Aligned_cols=57  Identities=23%  Similarity=0.253  Sum_probs=47.3

Q ss_pred             hhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440            5 LSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS   62 (98)
Q Consensus         5 ~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys   62 (98)
                      .+.+...+++++-.-++.....-+...++|+++++ |+++..+++|+.+++.|..+=.
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~-e~~~~~~~~g~~~~~~Gv~ll~  134 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLG-ETLSPLAWLGILIITLGLLVLG  134 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHh
Confidence            34455567777777777777788899999999999 9999999999999999997644

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=94.62  E-value=0.03  Score=41.72  Aligned_cols=53  Identities=19%  Similarity=0.430  Sum_probs=44.6

Q ss_pred             hHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHH
Q 045440            7 QFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW   60 (98)
Q Consensus         7 ~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~   60 (98)
                      -+..+++..+-..+....+--+..+++|++++| |+++..+++|.++.++|..+
T Consensus       228 ~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lg-E~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       228 VLWAMTRLPVATVVALRNTSIVFAVVLGIWFLN-ERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHhhCCceEEEeecccHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHhHHh
Confidence            345567777777777777777899999999999 99999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=94.56  E-value=0.12  Score=39.35  Aligned_cols=30  Identities=10%  Similarity=0.109  Sum_probs=25.7

Q ss_pred             cchhhHHhHHHHHHHHHHHHhhhcCCCCcC
Q 045440           43 LNLHVVLGMIIAVFGMIWYSNASTKPGGKE   72 (98)
Q Consensus        43 ~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~   72 (98)
                      -.+.|++|+++.++|..+|...|..+++.+
T Consensus       114 ~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~  143 (254)
T PF07857_consen  114 SPWLNYIGVALVLVSGIIFSFIKSEEKEPK  143 (254)
T ss_pred             hhHHHHHHHHHHHHHHHheeeecCCCCCcc
Confidence            457999999999999999999998875543

The region concerned is approximately 280 residues long.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=94.46  E-value=0.073  Score=42.27  Aligned_cols=58  Identities=17%  Similarity=0.317  Sum_probs=54.3

Q ss_pred             hhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440            4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS   62 (98)
Q Consensus         4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys   62 (98)
                      |-..|.....-+|.|++|..++|...+-++++++.+ .+++..+|.-+++.++|..+=+
T Consensus       106 Nnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~-rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen  106 NNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILR-RKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             hhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHh
Confidence            446788889999999999999999999999999999 9999999999999999999866

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=94.43  E-value=0.045  Score=42.56  Aligned_cols=57  Identities=23%  Similarity=0.285  Sum_probs=49.4

Q ss_pred             hhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440            5 LSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS   62 (98)
Q Consensus         5 ~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys   62 (98)
                      ...++.++.+|+-..+++-..--+.+.++++++++ ++++...++|+++.++|.++=.
T Consensus       129 ~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~-ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        129 FGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLK-QFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHhee
Confidence            34557778888888888888888899999999999 9999999999999999998743

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=94.43  E-value=0.1  Score=37.49  Aligned_cols=57  Identities=21%  Similarity=0.407  Sum_probs=49.7

Q ss_pred             hHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhh
Q 045440            7 QFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNA   64 (98)
Q Consensus         7 ~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~   64 (98)
                      -+...++.++...+......-+..+++++++++ |+++..+++|.++.+.|..+....
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~-e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLG-EPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHhcc
Confidence            345668888888888888888888889999999 999999999999999999998765

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=93.89  E-value=0.075  Score=36.36  Aligned_cols=34  Identities=24%  Similarity=0.438  Sum_probs=27.9

Q ss_pred             HHhhhhh--eeeCCCccchhhHHhHHHHHHHHHHHHh
Q 045440           29 LVLIMGF--LFFGKEGLNLHVVLGMIIAVFGMIWYSN   63 (98)
Q Consensus        29 ~~i~~s~--~~fg~~~~t~~~~~G~~i~l~G~~~Ys~   63 (98)
                      .+.++++  ++|| |++|+.+++|+++.++|.++-+.
T Consensus        87 ~v~~~~~~~~~~~-E~ls~~~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         87 LVYLAAMLLPWFN-ETFSLKKTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHhcc
Confidence            3444555  4899 99999999999999999999653

>COG2510 Predicted membrane protein [Function unknown]

Probab=93.07  E-value=0.041  Score=38.52  Aligned_cols=32  Identities=34%  Similarity=0.771  Sum_probs=29.4

Q ss_pred             HHHhhhhheeeCCCccchhhHHhHHHHHHHHHH
Q 045440           28 ILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW   60 (98)
Q Consensus        28 i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~   60 (98)
                      ++.+++|++++| |++|..+++|+.+.++|..+
T Consensus       105 vl~~lls~lfL~-E~ls~~~~iG~~LI~~Gail  136 (140)
T COG2510         105 VLAVLLSILFLG-ERLSLPTWIGIVLIVIGAIL  136 (140)
T ss_pred             HHHHHHHHHHhc-CCCCHHHHHHHHHHHhCeee
Confidence            577899999999 99999999999999999765

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=92.91  E-value=0.31  Score=38.81  Aligned_cols=60  Identities=15%  Similarity=0.248  Sum_probs=50.0

Q ss_pred             HHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCC
Q 045440            8 FICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKP   68 (98)
Q Consensus         8 f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~   68 (98)
                      -+++++.+-+...-+-.+-.++..++|+++|| -++|..=.+|..+.+..+.+|+....++
T Consensus       268 s~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~-~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  268 SLVMKYADNILKGFSTSVAIILTTVASIALFD-FQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            34556666666666667778889999999999 9999999999999999999999666666

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.74  E-value=0.18  Score=39.68  Aligned_cols=56  Identities=16%  Similarity=0.309  Sum_probs=49.6

Q ss_pred             HhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhh
Q 045440            9 ICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNAS   65 (98)
Q Consensus         9 ~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k   65 (98)
                      -+|+.-.|++...+-+.++.+++++|+++|. .|+|.+-.-|-++.+.|..+=-+.|
T Consensus       279 alI~~fGA~~aatvTTaRKavTi~lSfllFs-KPfT~qy~~~gllv~lgI~Ln~ysk  334 (367)
T KOG1582|consen  279 ALIKLFGALIAATVTTARKAVTILLSFLLFS-KPFTEQYVWSGLLVVLGIYLNMYSK  334 (367)
T ss_pred             HHHHHhchhHHHHHHHhHhHHHHHHHHHHHc-CchHHHHhhhhHHHHHHHHhhcccC
Confidence            4567788999999999999999999999999 9999999999999999998755555

>PRK11689 aromatic amino acid exporter; Provisional

Probab=92.66  E-value=0.15  Score=38.29  Aligned_cols=49  Identities=22%  Similarity=0.479  Sum_probs=41.2

Q ss_pred             ccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440           13 RFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS   62 (98)
Q Consensus        13 ~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys   62 (98)
                      .+++..-++....--+.+.++++++++ |+++..+++|++++++|..+-.
T Consensus        88 ~~~a~~a~~l~~~~Pi~~~ll~~~~~~-e~~~~~~~~g~~l~~~Gv~li~  136 (295)
T PRK11689         88 RRQAIEVGMVNYLWPSLTILFAVLFNG-QKANWLLIPGLLLALAGVAWVL  136 (295)
T ss_pred             cccchHHHHHHHHhHHHHHHHHHHHhc-CCccHHHHHHHHHHHHhHhhee
Confidence            456666677777778888899999999 9999999999999999997643

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=92.44  E-value=0.29  Score=35.16  Aligned_cols=62  Identities=19%  Similarity=0.351  Sum_probs=51.6

Q ss_pred             hhhhHHhhcccCcchhhhhhhHhHHHHhhhhh-eeeCCCccchhhHHhHHHHHHHHHHHHhhhc
Q 045440            4 NLSQFICIGRFTAVSFQVLGHMKTILVLIMGF-LFFGKEGLNLHVVLGMIIAVFGMIWYSNAST   66 (98)
Q Consensus         4 N~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~-~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~   66 (98)
                      +.+-|..++++++-..++....--+.+.++++ ++++ ++++..++.|+.+.+.|.++-.....
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~Gv~lv~~~~~  146 (292)
T COG0697          84 FLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLG-ERLSLLQILGILLALAGVLLILLGGG  146 (292)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHcc-CCCcHHHHHHHHHHHHhHHheecCCC
Confidence            34556668889998888989888999999997 6668 99999999999999999988665443

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=92.13  E-value=0.2  Score=37.67  Aligned_cols=54  Identities=22%  Similarity=0.380  Sum_probs=40.8

Q ss_pred             HHhhccc-CcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440            8 FICIGRF-TAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS   62 (98)
Q Consensus         8 f~~i~~T-SalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys   62 (98)
                      |....++ ++-.-++.-..--+.+.++++++++ |+++..+++|++++++|..+-.
T Consensus        77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~-e~~~~~~~~~~~l~~~Gv~ll~  131 (299)
T PRK11453         77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFG-ERLQGKQLAGIALAIFGVLVLI  131 (299)
T ss_pred             HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHhHHHhc
Confidence            3344554 3333454555667888999999999 9999999999999999987654

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=92.11  E-value=0.11  Score=33.22  Aligned_cols=37  Identities=32%  Similarity=0.596  Sum_probs=23.1

Q ss_pred             cchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHH
Q 045440           16 AVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMII   53 (98)
Q Consensus        16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i   53 (98)
                      .+.|.+..-+-.+.+.++|+++|| |++|+.+++|+.+
T Consensus        56 ~vaYavw~g~g~v~~~~~~~~~f~-E~~s~~~~~gi~l   92 (93)
T PF00893_consen   56 SVAYAVWTGLGIVGVTLVGVFFFG-ESLSLSKWLGIGL   92 (93)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH---------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHhheee
Confidence            466777766778899999999999 9999999999976

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=91.01  E-value=0.37  Score=36.49  Aligned_cols=54  Identities=15%  Similarity=0.258  Sum_probs=47.7

Q ss_pred             Hhhc-ccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhH----HhHHHHHHHHHHHHh
Q 045440            9 ICIG-RFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVV----LGMIIAVFGMIWYSN   63 (98)
Q Consensus         9 ~~i~-~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~----~G~~i~l~G~~~Ys~   63 (98)
                      .-.+ +..+-+.++...+--+..++.|+++++ |+.+++++    +|+++.+.|..+=..
T Consensus       230 ~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~-E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       230 FSAQPKVGVATSFSLSQLGVIISTLGGILILG-EKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHcccccchhhHHHHHHHHHHHHHHHHHHHhc-cCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            3335 788899999999999999999999999 99999999    999999999987544

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=90.33  E-value=0.077  Score=42.89  Aligned_cols=65  Identities=18%  Similarity=0.317  Sum_probs=56.6

Q ss_pred             ehhhhHHhhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCC
Q 045440            3 TNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKP   68 (98)
Q Consensus         3 lN~s~f~~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~   68 (98)
                      -|++.=..+..||.-..+|+...-...++++|.++-+ |++|+.++++.++.++|+++-++.+.++
T Consensus       172 anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~-e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  172 ANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPV-ERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCc-chhhHHHHHHHHHhhccEEEEEeccccc
Confidence            4555556678999999999999999999999999998 9999999999999999999977765544

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=90.32  E-value=0.71  Score=34.59  Aligned_cols=54  Identities=17%  Similarity=0.179  Sum_probs=40.9

Q ss_pred             hHHhh-cccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440            7 QFICI-GRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS   62 (98)
Q Consensus         7 ~f~~i-~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys   62 (98)
                      .++.. ..+++-..++.-..--+.+.+++++ ++ |+++..+++|+.++++|.++-.
T Consensus        86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~-e~~~~~~~~~~~la~~Gv~ll~  140 (292)
T PRK11272         86 VTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FG-IRTRKLEWLGIAIGLAGIVLLN  140 (292)
T ss_pred             HHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hc-ccCchhHHHHHHHHHHhHHHHh
Confidence            34444 5566555666666677777788875 78 9999999999999999987753

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=90.15  E-value=0.25  Score=37.44  Aligned_cols=61  Identities=16%  Similarity=0.281  Sum_probs=42.6

Q ss_pred             hhhhHHhhcccCcchh-hhhhhHhHHHHhhhhheeeCCCccchhh----HHhHHHHHHHHHHHHhhh
Q 045440            4 NLSQFICIGRFTAVSF-QVLGHMKTILVLIMGFLFFGKEGLNLHV----VLGMIIAVFGMIWYSNAS   65 (98)
Q Consensus         4 N~s~f~~i~~TSalT~-sV~G~~K~i~~i~~s~~~fg~~~~t~~~----~~G~~i~l~G~~~Ys~~k   65 (98)
                      |++.|..+++++.-+- .+...+--+...+.|+++|+ |+.+.++    ++|++++++|.++....+
T Consensus        73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~-e~~t~~~~~~~~~g~~l~l~G~~l~~~~~  138 (290)
T TIGR00776        73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFG-EWSTSIQTLLGLLALILIIIGVYLTSRSK  138 (290)
T ss_pred             hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhHheEEecc
Confidence            4555666665443222 12222444567789999999 9999999    999999999999976554

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=88.04  E-value=0.74  Score=35.92  Aligned_cols=54  Identities=15%  Similarity=0.322  Sum_probs=44.0

Q ss_pred             hhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhhhcCCCCcC
Q 045440           18 SFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNASTKPGGKE   72 (98)
Q Consensus        18 T~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~k~~~~~~~   72 (98)
                      |..+...+--.++.++++++|| |+++..+++..+..-.|.++|+....++++++
T Consensus       239 ~~G~lqYi~Ptl~fllav~i~~-E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~~  292 (293)
T COG2962         239 TLGFLQYIEPTLMFLLAVLIFG-EPFDSDQLVTFAFIWLALALFSIDGLYTARKK  292 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3344444555688899999999 99999999999999999999999887665544

>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins

Probab=83.57  E-value=2.5  Score=30.28  Aligned_cols=41  Identities=10%  Similarity=0.129  Sum_probs=22.9

Q ss_pred             HHhHHHHHHHHHHHHhhhcCCCCcCC-C-CCCCC-CCCcccCCC
Q 045440           48 VLGMIIAVFGMIWYSNASTKPGGKER-R-SSLPT-TRPQKHGNL   88 (98)
Q Consensus        48 ~~G~~i~l~G~~~Ys~~k~~~~~~~~-~-~~~~~-~~~~~~~~~   88 (98)
                      ++|+...++..++.-.+|.+++++|. + ..+.+ .++.++.+|
T Consensus       101 l~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~~~~~~~Em~pL  144 (163)
T PF06679_consen  101 LVGLSALAILYFVIRTFRLRRRNRKTRKYGVLTTRAENVEMAPL  144 (163)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccceeecccCCCcccceeccc
Confidence            45555555666666777777755553 3 54443 244444444

Their function is unknown.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=82.78  E-value=0.74  Score=31.12  Aligned_cols=44  Identities=16%  Similarity=0.339  Sum_probs=36.1

Q ss_pred             cchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHH
Q 045440           16 AVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIW   60 (98)
Q Consensus        16 alT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~   60 (98)
                      +++.-+++.+--+.+.+.|+++.. +..+...++|+.+.++|+.+
T Consensus        68 SlavPi~Nsl~fvfT~l~g~~lge-~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   68 SLAVPIANSLAFVFTALTGWLLGE-EVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             eeeehHHhHHHHHHHHHHHHHhcC-cccchhHHHHHHHHHcCeee
Confidence            344556677888899999988888 88899999999999999753

Many members are annotated as potential transmembrane proteins.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=80.91  E-value=1.2  Score=34.92  Aligned_cols=50  Identities=22%  Similarity=0.270  Sum_probs=40.2

Q ss_pred             hhcccCcchhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHH
Q 045440           10 CIGRFTAVSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYS   62 (98)
Q Consensus        10 ~i~~TSalT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys   62 (98)
                      +++.+||..+++.-..-+.-.+++  ..|| .++.+.-++..+.+..|.++|+
T Consensus       249 l~k~~~aT~~nlslLTsDmwsl~i--~~Fg-Yhv~wLY~laF~~i~~GliiYs  298 (336)
T KOG2766|consen  249 LIKTNSATMFNLSLLTSDMWSLLI--RTFG-YHVDWLYFLAFATIATGLIIYS  298 (336)
T ss_pred             heecCCceEEEhhHhHHHHHHHHH--HHHh-cchhhhhHHHHHHHHHhhEEee
Confidence            457888888887666555555554  7789 9999999999999999999993

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	96.64
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	96.47

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=96.64  E-value=0.0015  Score=44.22  Aligned_cols=46  Identities=20%  Similarity=0.546  Sum_probs=34.2

Q ss_pred             hhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhh
Q 045440           18 SFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNA   64 (98)
Q Consensus        18 T~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~   64 (98)
                      .+.+...+--+..+++|+++|| |++|+.+++|+++.++|..+.+..
T Consensus        59 ay~iw~~l~pv~~~l~g~l~lg-E~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           59 AYAIWSGVGIVLISLLSWGFFG-QRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4555467778899999999999 999999999999999999998754

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=96.47  E-value=0.004  Score=40.21  Aligned_cols=47  Identities=19%  Similarity=0.557  Sum_probs=39.6

Q ss_pred             chhhhhhhHhHHHHhhhhheeeCCCccchhhHHhHHHHHHHHHHHHhh
Q 045440           17 VSFQVLGHMKTILVLIMGFLFFGKEGLNLHVVLGMIIAVFGMIWYSNA   64 (98)
Q Consensus        17 lT~sV~G~~K~i~~i~~s~~~fg~~~~t~~~~~G~~i~l~G~~~Ys~~   64 (98)
                      ..+.+...+--+.+.++|+++|| |++|+.+++|+.+.++|....+..
T Consensus        58 ~ay~i~~g~~~v~~~l~~~~~~~-E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           58 IAYAIWSGVGIVLISLLSWGFFG-QRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             hHHHHHhhHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34455456678889999999999 999999999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00