Citrus Sinensis ID: 045443

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
MGYHYSCNGLLLLVSVLMVVASSAVGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRSSSSSVSDAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFLLSADNTS
cccccHHHHHHHHHHHHHHHccccccccccccccEEccccEEEEcccEEEEEEEccccccEEEEccEEEEEEEEEEEEEEcccccEEEEEEEEEccccccccccEEEEcccccccEEEEEEEEEcccccEEEEEEcccccccccEEEEEEEEccEEEEEEccEEEEEEccccccccccEEEEEEEcccccccccccEEEEccccccEEEEEEEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHccEEEccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccEEEEccccEEEEEEEccccccccccccEEEEEEEEEEEEcccccccEEEEEEEccccccccEEEEEEccccccccEEEEEEEEEcccccccEEEEEEEcccccccEEEEEEcccEEEEEEEEccccHHcccccccccccEEEEEccccccHHHccccEEcccccccEEEEEcccccccEEccccccccccccccccccHHHHHHccHHHHHHHHHHHHccEEEEcccccHcccccccHHccccc
mgyhyscnGLLLLVSVLMVVASSavgsfyqdfdltwgdkrakifnggqlLSLSLdrvsgsgfqskrdyLFGRIDMQLKLVAGDSAGTVTAYYLssqgpthdeidfeflgnvsgqpyilhtnifaqgkgnreqqfylwfdptrnfhtysviwkpqhitfplecskmlnllefpslknqpmkIYSSLwnaddwatrgglvktdwtkapftayyrnfraipcnncgskrsssssvsdaqrqwqprdeldaTSRRRLRWVQKYFMIYNYctdlkrfpqgfllsadnts
MGYHYSCNGLLLLVSVLMVVASSAVGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRaipcnncgskrsssssvsdaqrqwqprdeldatsrrrLRWVQKYFMIYNYCTDLKRFPQGFLLSADNTS
MGYHYSCNgllllvsvlmvvassavgsFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGskrsssssvsDAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFLLSADNTS
**YHYSCNGLLLLVSVLMVVASSAVGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNC****************************RRLRWVQKYFMIYNYCTDLKRFPQGFLL******
*****SCNGLLLLVSVLMVVASSAVGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRSSSSSVSDAQRQWQ**DEL*ATSRRRLRWVQKYFMIYNYCTDLKRFPQGFLLSAD***
MGYHYSCNGLLLLVSVLMVVASSAVGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNC**********************LDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFLLSADNTS
*GYHYSCNGLLLLVSVLMVVASSAVGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCG*************RQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFLLSA****
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGYHYSCNGLLLLVSVLMVVASSAVGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITFPLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRSSSSSVSDAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFLLSADNTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query284 2.2.26 [Sep-21-2011]
P35694283 Brassinosteroid-regulated yes no 0.919 0.922 0.732 1e-112
Q8LG58291 Probable xyloglucan endot yes no 0.926 0.903 0.672 1e-107
Q38911289 Probable xyloglucan endot no no 0.964 0.948 0.659 1e-106
Q38907284 Probable xyloglucan endot no no 0.915 0.915 0.603 1e-90
Q38857284 Xyloglucan endotransgluco no no 0.933 0.933 0.567 3e-88
Q38910286 Probable xyloglucan endot no no 0.933 0.926 0.573 4e-88
P24806269 Xyloglucan endotransgluco no no 0.880 0.929 0.560 2e-85
Q9FKL9285 Probable xyloglucan endot no no 0.876 0.873 0.596 3e-85
Q9FKL8284 Putative xyloglucan endot no no 0.873 0.873 0.586 1e-84
Q9ZV40305 Probable xyloglucan endot no no 0.922 0.859 0.540 2e-83
>sp|P35694|BRU1_SOYBN Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1 Back     alignment and function desciption
 Score =  406 bits (1043), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/277 (73%), Positives = 226/277 (81%), Gaps = 16/277 (5%)

Query: 8   NGLLLLVSVLMVVAS---SAVGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQS 64
           NG  +L+ V +VV++   +  GSFYQDFDLTWG  RAKIFNGGQLLSLSLD+VSGSGF+S
Sbjct: 9   NGFYVLMLVGIVVSTMVATCAGSFYQDFDLTWGGDRAKIFNGGQLLSLSLDKVSGSGFKS 68

Query: 65  KRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFA 124
           K++YLFGRIDMQLKLVAG+SAGTVTAYYLSSQGPTHDEIDFEFLGN+SG PYILHTNIF 
Sbjct: 69  KKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNLSGDPYILHTNIFT 128

Query: 125 QGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITF-----PLECSKMLNLLEFPSLKNQPM 179
           QGKGNREQQFYLWFDPTRNFHTYS+IWKPQHI F     P+   K    L  P  KNQPM
Sbjct: 129 QGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNTPIRVFKNAEPLGVPFPKNQPM 188

Query: 180 KIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRSSSSSVSDAQRQW 239
           +IYSSLWNADDWATRGGLVKTDW+KAPFTAYYRNF+AI  ++  S  +S +         
Sbjct: 189 RIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKAIEFSSKSSISNSGAEYE------ 242

Query: 240 QPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGF 276
              +ELDA SRRRLRWVQKYFMIYNYC+DLKRFPQG 
Sbjct: 243 --ANELDAYSRRRLRWVQKYFMIYNYCSDLKRFPQGL 277
Possible role in brassinosteroid-stimulated elongation.
Glycine max (taxid: 3847)
>sp|Q8LG58|XTH16_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2 Back     alignment and function description
>sp|Q38911|XTH15_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1 Back     alignment and function description
>sp|Q38907|XTH25_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2 Back     alignment and function description
>sp|Q38857|XTH22_ARATH Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1 Back     alignment and function description
>sp|Q38910|XTH23_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1 Back     alignment and function description
>sp|P24806|XTH24_ARATH Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2 Back     alignment and function description
>sp|Q9FKL9|XTH12_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKL8|XTH13_ARATH Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZV40|XTH21_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
116871386272 xyloglucan endotransglycosylase 3 [Litch 0.901 0.941 0.779 1e-115
224131448284 predicted protein [Populus trichocarpa] 0.926 0.926 0.746 1e-114
124109191284 xyloglucan endotransglycosylase/hydrolas 0.919 0.919 0.741 1e-113
356512423283 PREDICTED: brassinosteroid-regulated pro 0.911 0.915 0.735 1e-112
351726490283 brassinosteroid-regulated protein BRU1 p 0.919 0.922 0.732 1e-111
255646693283 unknown [Glycine max] 0.911 0.915 0.727 1e-111
217072616283 unknown [Medicago truncatula] 0.908 0.911 0.767 1e-110
255627559290 unknown [Glycine max] 0.922 0.903 0.738 1e-110
388503904283 unknown [Medicago truncatula] 0.933 0.936 0.736 1e-110
357462863282 Xyloglucan endotransglycosylase/hydrolas 0.940 0.946 0.7 1e-109
>gi|116871386|gb|ABK30789.1| xyloglucan endotransglycosylase 3 [Litchi chinensis] Back     alignment and taxonomy information
 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/263 (77%), Positives = 224/263 (85%), Gaps = 7/263 (2%)

Query: 18  MVVASSAVGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQL 77
           M+V SS  G+FYQDFDLTWGD RAKIFN GQLLSLSLD+VSGSGF+SK++Y+FGRIDMQL
Sbjct: 1   MLVGSS-TGNFYQDFDLTWGDHRAKIFNRGQLLSLSLDKVSGSGFRSKKEYMFGRIDMQL 59

Query: 78  KLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLW 137
           KLVAG+SAGTVTAYYLSSQGPTHDEIDFEFLGN+SG PYILHTN+F QGKG+REQQFYLW
Sbjct: 60  KLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNLSGDPYILHTNVFTQGKGDREQQFYLW 119

Query: 138 FDPTRNFHTYSVIWKPQHITF-----PLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWA 192
           FDPTRNFHTYS+IWKPQHI F     P+   K    +  P  KNQPM+IYSSLWNADDWA
Sbjct: 120 FDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNAESVGVPFPKNQPMRIYSSLWNADDWA 179

Query: 193 TRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRSSSSSVSDAQRQWQPRDELDATSRRR 252
           TRGGLVKTDWTKAPFTAYYRNF A+PC +C  K SSSS    A++Q    DELDA SRRR
Sbjct: 180 TRGGLVKTDWTKAPFTAYYRNFNAVPCTSCWPK-SSSSCADGARQQANMNDELDANSRRR 238

Query: 253 LRWVQKYFMIYNYCTDLKRFPQG 275
           LRWVQKYFMIYNYC DLKRFPQG
Sbjct: 239 LRWVQKYFMIYNYCADLKRFPQG 261

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224131448|ref|XP_002321087.1| predicted protein [Populus trichocarpa] gi|222861860|gb|EEE99402.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|124109191|gb|ABM91071.1| xyloglucan endotransglycosylase/hydrolase precursor XTH-14 [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|356512423|ref|XP_003524918.1| PREDICTED: brassinosteroid-regulated protein BRU1-like [Glycine max] Back     alignment and taxonomy information
>gi|351726490|ref|NP_001238152.1| brassinosteroid-regulated protein BRU1 precursor [Glycine max] gi|543905|sp|P35694.1|BRU1_SOYBN RecName: Full=Brassinosteroid-regulated protein BRU1; Flags: Precursor gi|347459|gb|AAA81350.1| brassinosteroid-regulated protein [Glycine max] gi|255641725|gb|ACU21133.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255646693|gb|ACU23820.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|217072616|gb|ACJ84668.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255627559|gb|ACU14124.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388503904|gb|AFK40018.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357462863|ref|XP_003601713.1| Xyloglucan endotransglycosylase/hydrolase XTH-21 [Medicago truncatula] gi|355490761|gb|AES71964.1| Xyloglucan endotransglycosylase/hydrolase XTH-21 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query284
TAIR|locus:2095168291 XTH16 "xyloglucan endotransglu 0.876 0.855 0.703 1.2e-97
TAIR|locus:2129445289 XTH15 "xyloglucan endotransglu 0.869 0.854 0.701 4.1e-97
TAIR|locus:2174597284 XTH25 "xyloglucan endotransglu 0.852 0.852 0.613 5e-83
TAIR|locus:2117567286 XTR6 "xyloglucan endotransglyc 0.869 0.863 0.602 2e-81
TAIR|locus:2174497284 TCH4 "Touch 4" [Arabidopsis th 0.869 0.869 0.584 2.2e-80
TAIR|locus:2174572285 XTH12 "xyloglucan endotransglu 0.855 0.852 0.597 3.7e-80
TAIR|locus:2174582284 XTH13 "xyloglucan endotransglu 0.855 0.855 0.589 7.6e-80
TAIR|locus:2128936269 XTH24 "xyloglucan endotransglu 0.816 0.862 0.584 6.2e-78
TAIR|locus:2053967305 XTH21 "xyloglucan endotransglu 0.866 0.806 0.545 5e-76
TAIR|locus:2117492287 XTH14 "xyloglucan endotransglu 0.855 0.846 0.574 5.7e-75
TAIR|locus:2095168 XTH16 "xyloglucan endotransglucosylase/hydrolase 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
 Identities = 180/256 (70%), Positives = 207/256 (80%)

Query:    28 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGT 87
             F ++FDLTWG+ R KIF+GG++LSLSLDRVSGSGF+SK++YLFGRIDMQLKLVAG+SAGT
Sbjct:    27 FNEEFDLTWGEHRGKIFSGGKMLSLSLDRVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGT 86

Query:    88 VTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTY 147
             VTAYYLSS+GPTHDEIDFEFLGN +G+PY+LHTN+FAQGKGNREQQFYLWFDPT+NFHTY
Sbjct:    87 VTAYYLSSEGPTHDEIDFEFLGNETGKPYVLHTNVFAQGKGNREQQFYLWFDPTKNFHTY 146

Query:   148 SVIWKPQHITF-----PLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGLVKTDW 202
             S++W+PQHI F     P+        L  P  KNQPMKIYSSLWNADDWATRGGLVKTDW
Sbjct:   147 SLVWRPQHIIFMVDNVPIRVFNNAEQLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDW 206

Query:   203 TKAPFTAYYRNFRAIPCN-NCGXXXXXXXXXXD-AQRQWQPRDELDATSRRRLRWVQKYF 260
             +KAPFTAYYR F A  C  + G               + Q  +EL+A  RRRLRWVQKYF
Sbjct:   207 SKAPFTAYYRGFNAAACTVSSGSSFCDPKFKSSFTNGESQVANELNAYGRRRLRWVQKYF 266

Query:   261 MIYNYCTDLKRFPQGF 276
             MIY+YC+DLKRFPQGF
Sbjct:   267 MIYDYCSDLKRFPQGF 282
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006073 "cellular glucan metabolic process" evidence=IEA
GO:0016762 "xyloglucan:xyloglucosyl transferase activity" evidence=IEA
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS
GO:0048046 "apoplast" evidence=IEA
TAIR|locus:2129445 XTH15 "xyloglucan endotransglucosylase/hydrolase 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174597 XTH25 "xyloglucan endotransglucosylase/hydrolase 25" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117567 XTR6 "xyloglucan endotransglycosylase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174497 TCH4 "Touch 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174572 XTH12 "xyloglucan endotransglucosylase/hydrolase 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174582 XTH13 "xyloglucan endotransglucosylase/hydrolase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128936 XTH24 "xyloglucan endotransglucosylase/hydrolase 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053967 XTH21 "xyloglucan endotransglucosylase/hydrolase 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117492 XTH14 "xyloglucan endotransglucosylase/hydrolase 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q40144XTH1_SOLLC2, ., 4, ., 1, ., 2, 0, 70.50980.86260.8277N/Ano
P93349XTH_TOBAC2, ., 4, ., 1, ., 2, 0, 70.52560.86260.8305N/Ano
Q41542XTH_WHEAT2, ., 4, ., 1, ., 2, 0, 70.52380.85210.8259N/Ano
P35694BRU1_SOYBNNo assigned EC number0.73280.91900.9222yesno
Q8LG58XTH16_ARATH2, ., 4, ., 1, ., 2, 0, 70.67260.92600.9037yesno
Q8LNZ5XTHB_PHAAN2, ., 4, ., 1, ., 2, 0, 70.50530.92250.8941N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
cd02176263 cd02176, GH16_XET, Xyloglucan endotransglycosylase 1e-131
PLN03161291 PLN03161, PLN03161, Probable xyloglucan endotransg 2e-92
pfam00722174 pfam00722, Glyco_hydro_16, Glycosyl hydrolases fam 5e-71
cd02183203 cd02183, GH16_fungal_CRH1_transglycosylase, glycos 2e-22
cd02175212 cd02175, GH16_lichenase, lichenase, member of glyc 1e-20
cd00413210 cd00413, Glyco_hydrolase_16, glycosyl hydrolase fa 9e-19
pfam0695551 pfam06955, XET_C, Xyloglucan endo-transglycosylase 7e-16
COG2273355 COG2273, SKN1, Beta-glucanase/Beta-glucan syntheta 6e-07
cd08023235 cd08023, GH16_laminarinase_like, Laminarinase, mem 0.001
>gnl|CDD|185685 cd02176, GH16_XET, Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information 
 Score =  373 bits (959), Expect = e-131
 Identities = 126/259 (48%), Positives = 164/259 (63%), Gaps = 12/259 (4%)

Query: 24  AVGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGD 83
              SF ++F +TWG    ++ N G  + L+LD+ SGSGF+SK  YLFG   M++KL  GD
Sbjct: 2   VAASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGD 61

Query: 84  SAGTVTAYYLSSQG-PTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTR 142
           SAGTVTA+YLSSQG   HDEIDFEFLGNV+GQPY L TN+FA G G REQ+ YLWFDPT 
Sbjct: 62  SAGTVTAFYLSSQGPDNHDEIDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTA 121

Query: 143 NFHTYSVIWKPQHITF-----PLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGL 197
           +FHTYS++W P  I F     P+   K    L  P   +QPM +Y+S+W+  DWAT+GG 
Sbjct: 122 DFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGVYASIWDGSDWATQGGR 181

Query: 198 VKTDWTKAPFTAYYRNFRAIPCNNCGSKRSSSSSVSDAQRQW---QPRDELDATSRRRLR 254
           VK DW+ APF A YR+F+    + C      S S       W       +L A  +R + 
Sbjct: 182 VKIDWSYAPFVASYRDFKL---DGCVVDPGDSFSSCSCTEDWWNGSTYQQLSANQQRAME 238

Query: 255 WVQKYFMIYNYCTDLKRFP 273
           WV++ +M+Y+YC D KR+P
Sbjct: 239 WVRRNYMVYDYCDDRKRYP 257

Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. Length = 263
>gnl|CDD|178706 PLN03161, PLN03161, Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information
>gnl|CDD|216081 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16 Back     alignment and domain information
>gnl|CDD|185692 cd02183, GH16_fungal_CRH1_transglycosylase, glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>gnl|CDD|185684 cd02175, GH16_lichenase, lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185683 cd00413, Glyco_hydrolase_16, glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|219239 pfam06955, XET_C, Xyloglucan endo-transglycosylase (XET) C-terminus Back     alignment and domain information
>gnl|CDD|225182 COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185693 cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 284
PLN03161291 Probable xyloglucan endotransglucosylase/hydrolase 100.0
cd02176263 GH16_XET Xyloglucan endotransglycosylase, member o 100.0
cd02183203 GH16_fungal_CRH1_transglycosylase glycosylphosphat 100.0
cd02175212 GH16_lichenase lichenase, member of glycosyl hydro 100.0
PF00722185 Glyco_hydro_16: Glycosyl hydrolases family 16; Int 100.0
cd00413210 Glyco_hydrolase_16 glycosyl hydrolase family 16. T 99.97
cd08023235 GH16_laminarinase_like Laminarinase, member of the 99.96
cd02178258 GH16_beta_agarase Beta-agarase, member of glycosyl 99.96
cd02177269 GH16_kappa_carrageenase Kappa-carrageenase, member 99.94
cd02182259 GH16_Strep_laminarinase_like Streptomyces laminari 99.93
cd02180295 GH16_fungal_KRE6_glucanase Saccharomyces cerevisia 99.92
cd08024330 GH16_CCF Coelomic cytolytic factor, member of glyc 99.91
cd02179321 GH16_beta_GRP beta-1,3-glucan recognition protein, 99.9
COG2273355 SKN1 Beta-glucanase/Beta-glucan synthetase [Carboh 99.9
PF0695551 XET_C: Xyloglucan endo-transglycosylase (XET) C-te 99.79
cd02181293 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D- 99.36
PF03935504 SKN1: Beta-glucan synthesis-associated protein (SK 99.24
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.3e-82  Score=584.61  Aligned_cols=271  Identities=46%  Similarity=0.821  Sum_probs=242.5

Q ss_pred             hHHHHHHHHHHHh----hccccccccCceeeecCCCeEEecCCcEEEEEEeCCCCCeEEEcceeEEEEEEEEEEeeCCCC
Q 045443            9 GLLLLVSVLMVVA----SSAVGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDS   84 (284)
Q Consensus         9 ~~~~~~~~~~~~~----~~~~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~~g~~i~Sk~~~~YG~~e~riKlp~g~s   84 (284)
                      +|.||+.|+++.+    .-...+|.++|.+.|+.+|+.+.++|.+|+|+||+.+|++|+||++|+||+||||||||+|++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~s   83 (291)
T PLN03161          4 LKTLLVALFAALAAFDRSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNS   83 (291)
T ss_pred             HHHHHHHHHHHHHhcCCCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCC
Confidence            4556665554433    224678999999999999999988888899999999999999999999999999999999888


Q ss_pred             CceEeeeeeeecCCCCCeEEEEEcCCCCCCCeEEEeeEEeCCCCCeeeeEeccCCCCCCcEEEEEEEeCCeEEE-----E
Q 045443           85 AGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITF-----P  159 (284)
Q Consensus        85 ~G~v~Af~l~s~~~~~dEIDiE~lG~~~g~p~~vqtN~~~~G~~~~e~~~~l~fdp~~dFHtY~i~Wtp~~I~f-----~  159 (284)
                      +|+||||||++.++.+|||||||||+++++++++|||+|.+|.++++++++++|||+++||+|+|+|+|++|+|     +
T Consensus        84 aG~v~AFwl~s~~~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~  163 (291)
T PLN03161         84 AGTVTAYYLSSTGSRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTP  163 (291)
T ss_pred             CCeEEEEEecCCCCCCCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEE
Confidence            99999999999777899999999999989999999999999999999999999999999999999999999999     8


Q ss_pred             cEEEEeccccCCCCCCCCCcEEEEeeecCCCccCCCCcccccCCCCCEEEEEeEEEEeeccCCCCCCC--CCcccCCCCC
Q 045443          160 LECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRS--SSSSVSDAQR  237 (284)
Q Consensus       160 ir~~~~~~~~g~~~P~~~Pm~l~lnlW~ggdWat~GG~~k~d~~~~Pf~a~~~~~~v~~c~~~~~~~~--~~~c~~~~~~  237 (284)
                      ||++++.+..+.+||+++||+|++|||+|++|||+||++||||+++||+|.|++|++++|   .+..+  ...|..+++.
T Consensus       164 iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C---~~~~~~~~~~c~~~~~~  240 (291)
T PLN03161        164 IRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARAC---KWNGPVSIKQCADPTPS  240 (291)
T ss_pred             EEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEee---ccCCCCCccccCCCCcc
Confidence            899998777788999878999999999999999999999999999999999999999999   54432  2468754234


Q ss_pred             CCCCC---ccCCHHHHHHHHHHhhcCeEEccccCCCCCCCCCCCCccC
Q 045443          238 QWQPR---DELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFLLSADN  282 (284)
Q Consensus       238 ~w~~~---~~l~~~~~~~~~~vr~~~m~YdYC~D~~R~p~~~p~EC~~  282 (284)
                      .||..   ++|+.+|+++|+|||+||||||||+|++|||.++||||..
T Consensus       241 ~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~  288 (291)
T PLN03161        241 NWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFK  288 (291)
T ss_pred             ccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCC
Confidence            56653   4799999999999999999999999999999878999975

>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16 Back     alignment and domain information
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16 Back     alignment and domain information
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET) Back     alignment and domain information
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A Back     alignment and domain information
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
1umz_A278 Xyloglucan Endotransglycosylase In Complex With The 1e-71
2vh9_A290 Crystal Structure Of Nxg1-Deltayniig In Complex Wit 4e-40
2uwb_A267 Crystal Structure Of The Nasturtium Seedling Mutant 4e-40
2uwc_A271 Crystal Structure Of Nasturtium Xyloglucan Hydrolas 2e-38
2uwa_A274 Crystal Structure Of The Nasturtium Seedling Xylogl 3e-38
3d6e_A201 Crystal Structure Of The Engineered 1,3-1,4-Beta-Gl 1e-12
1byh_A214 Molecular And Active-Site Structure Of A Bacillus ( 2e-11
1mac_A212 Crystal Structure And Site-Directed Mutagenesis Of 2e-11
1u0a_A214 Crystal Structure Of The Engineered Beta-1,3-1,4-En 2e-10
1cpm_A214 Native-Like In Vivo Folding Of A Circularly Permute 4e-10
1axk_A 394 Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Le 4e-10
1cpn_A208 Native-Like In Vivo Folding Of A Circularly Permute 5e-10
1ajk_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 3e-09
1gbg_A214 Bacillus Licheniformis Beta-Glucanase Length = 214 9e-09
3i4i_A234 Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glu 1e-08
3o5s_A238 Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanas 4e-08
1ajo_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 5e-04
3axd_A249 The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta 6e-04
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. Length = 278 Back     alignment and structure 
Iteration: 1

 Score =  266 bits (679), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 138/253 (54%), Positives = 164/253 (64%), Gaps = 10/253 (3%)
Query: 28  FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGT 87
           F +++  TW     K FNGG  + L LD+ +G+GFQSK  YLFG   MQ+KLV GDSAGT
Sbjct: 17  FGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGT 76
Query: 88  VTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTY 147
           VTA+YLSSQ   HDEIDFEFLGN +GQPYIL TN+F  GKG+REQ+ YLWFDPT+ FH Y
Sbjct: 77  VTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYY 136
Query: 148 SVIWKPQHITF-----PLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGLVKTDW 202
           SV+W    I F     P+   K    L      NQPMKIYSSLWNADDWATRGGL KTDW
Sbjct: 137 SVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDW 196
Query: 203 TKAPFTAYYRNFRAIPCNNCGXXXXXXXXXXDAQRQWQPRD--ELDATSRRRLRWVQKYF 260
           +KAPF A YR+F     + C              R W  ++  +LDA   RRL WV++ +
Sbjct: 197 SKAPFIASYRSFH---IDGCEASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKY 253
Query: 261 MIYNYCTDLKRFP 273
            IYNYCTD  R+P
Sbjct: 254 TIYNYCTDRSRYP 266
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide Length = 290 Back     alignment and structure
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig Length = 267 Back     alignment and structure
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 Length = 271 Back     alignment and structure
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 Length = 274 Back     alignment and structure
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase Protein From Bacillus Licheniformis Length = 201 Back     alignment and structure
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus (1-3,1-4)- Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase Length = 212 Back     alignment and structure
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With Beta-Glucan Tetrasaccharide Length = 214 Back     alignment and structure
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 214 Back     alignment and structure
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Length = 394 Back     alignment and structure
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 208 Back     alignment and structure
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-84 Length = 214 Back     alignment and structure
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase (Lichenase) Derived From A Mouse Hindgut Metagenome Length = 234 Back     alignment and structure
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From Bacillus Subtilis (Strain 168) Length = 238 Back     alignment and structure
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-127 Length = 214 Back     alignment and structure
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form Length = 249 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query284
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 1e-101
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 6e-91
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 4e-60
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 4e-60
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 2e-59
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 2e-57
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 1e-52
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 3e-46
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 2e-44
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 3e-17
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 1e-15
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 6e-07
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 4e-06
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 4e-06
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 5e-06
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 1e-05
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 3e-05
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 5e-05
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 9e-05
3rq0_A269 Glycosyl hydrolases family protein 16; structural 7e-04
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Length = 278 Back     alignment and structure
 Score =  296 bits (758), Expect = e-101
 Identities = 137/265 (51%), Positives = 169/265 (63%), Gaps = 6/265 (2%)

Query: 15  SVLMVVASSAVGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRID 74
           +    +      +F +++  TW     K FNGG  + L LD+ +G+GFQSK  YLFG   
Sbjct: 4   AAFAALRKPVDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFS 63

Query: 75  MQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQF 134
           MQ+KLV GDSAGTVTA+YLSSQ   HDEIDFEFLGN +GQPYIL TN+F  GKG+REQ+ 
Sbjct: 64  MQMKLVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRI 123

Query: 135 YLWFDPTRNFHTYSVIWKPQHITF-----PLECSKMLNLLEFPSLKNQPMKIYSSLWNAD 189
           YLWFDPT+ FH YSV+W    I F     P+   K    L      NQPMKIYSSLWNAD
Sbjct: 124 YLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNAD 183

Query: 190 DWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRSSSSSVSDAQRQWQPRDELDATS 249
           DWATRGGL KTDW+KAPF A YR+F    C      +  ++  +    Q + + +LDA  
Sbjct: 184 DWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCATQGARWWDQKEFQ-DLDAFQ 242

Query: 250 RRRLRWVQKYFMIYNYCTDLKRFPQ 274
            RRL WV++ + IYNYCTD  R+P 
Sbjct: 243 YRRLSWVRQKYTIYNYCTDRSRYPS 267
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Length = 274 Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Length = 214 Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Length = 208 Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Length = 238 Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Length = 234 Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Length = 394 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Length = 240 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Length = 271 Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Length = 251 Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Length = 272 Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Length = 420 Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Length = 280 Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Length = 245 Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Length = 264 Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Length = 266 Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Length = 269 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 100.0
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 100.0
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 100.0
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 100.0
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 100.0
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 100.0
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 100.0
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 100.0
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 100.0
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 100.0
3rq0_A269 Glycosyl hydrolases family protein 16; structural 100.0
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 99.98
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 99.98
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 99.97
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 99.97
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 99.97
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 99.97
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 99.97
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 99.96
1o4z_A346 Beta-agarase B; glycoside hydrolase family 16, aga 99.96
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 99.96
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 99.96
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 99.95
2w39_A298 Putative laminarinase; hydrolase, white ROT fungus 99.9
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.89
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 99.88
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.62
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 97.32
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-74  Score=534.59  Aligned_cols=257  Identities=53%  Similarity=0.940  Sum_probs=233.5

Q ss_pred             hhccccccccCceeeecCCCeEEecCCcEEEEEEeCCCCCeEEEcceeEEEEEEEEEEeeCCCCCceEeeeeeeecCCCC
Q 045443           21 ASSAVGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTH  100 (284)
Q Consensus        21 ~~~~~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~~g~~i~Sk~~~~YG~~e~riKlp~g~s~G~v~Af~l~s~~~~~  100 (284)
                      ....+.+|.++|+++|+++||++.++|+.|+|+|++.+|++|+||++|+||+||||||+|+|+++|+||||||++++|.+
T Consensus        10 ~~~~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~l~~~tsa~i~Sk~~f~YGr~Ear~Klp~g~s~G~wpAfwll~~~p~~   89 (278)
T 1umz_A           10 RKPVDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQNSEH   89 (278)
T ss_dssp             --CCCCCHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECSSSSC
T ss_pred             ccccCCcccCCceeeECCCCEEEeCCCCEEEEEECCCccCEEEECcEEECEEEEEEEEeCCCCCCceEEEEEEecCCCCC
Confidence            34567899999999999999999888888999999999999999999999999999999999889999999999988899


Q ss_pred             CeEEEEEcCCCCCCCeEEEeeEEeCCCCCeeeeEeccCCCCCCcEEEEEEEeCCeEEE-----EcEEEEeccccCCCCCC
Q 045443          101 DEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITF-----PLECSKMLNLLEFPSLK  175 (284)
Q Consensus       101 dEIDiE~lG~~~g~p~~vqtN~~~~G~~~~e~~~~l~fdp~~dFHtY~i~Wtp~~I~f-----~ir~~~~~~~~g~~~P~  175 (284)
                      +|||||++|+.+++++++|+|+|.+|.+++++++.+++||+++||+|+|+|+|++|+|     ++|++.+.+..+.+||+
T Consensus        90 gEIDmE~lG~~~g~~~tvhtn~~~~g~~~~~~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~v~t~~~~~~~g~~~Pf  169 (278)
T 1umz_A           90 DEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPF  169 (278)
T ss_dssp             CEEEEEEECCSTTSCCEEEEEEEBTTBCCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCSC
T ss_pred             CeEEEEEeCCCCCCceEEEEEEecCCCCCCcceEecCCCCccCcEEEEEEEecCeEEEEECCeEEEEEecCcCcCccCcC
Confidence            9999999999988899999999999999999899999999999999999999999999     77888877766788997


Q ss_pred             CCCcEEEEeeecCCCccCCCCcccccCCCCCEEEEEeEEEEeeccCCCCCCCCCcccCCCCCCCCCC---ccCCHHHHHH
Q 045443          176 NQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRSSSSSVSDAQRQWQPR---DELDATSRRR  252 (284)
Q Consensus       176 ~~Pm~l~lnlW~ggdWat~GG~~k~d~~~~Pf~a~~~~~~v~~c~~~~~~~~~~~c~~~~~~~w~~~---~~l~~~~~~~  252 (284)
                      ++||+|++|||+||+|+++||.+++||.++||+|+|+.+++++|   .++.+.+.|.+. +..||+.   ++|+.+|+++
T Consensus       170 ~~P~~lilnlw~GG~Wa~~gG~~~~d~~~~p~v~~vr~~~~~~c---~~~~~~~~c~~~-~~~~~~~~~~~~l~~~~~~~  245 (278)
T 1umz_A          170 NQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGC---EASVEAKFCATQ-GARWWDQKEFQDLDAFQYRR  245 (278)
T ss_dssp             SSCBEEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEE---ECCSSSCCCTTT-TCSGGGSGGGSSCCHHHHHH
T ss_pred             CCceEEEEEEEECCcccCCCCccccCCCCCCEEEEEEEEEEecc---cCCCCCCccCCC-cccccccCccccCCHHHHHH
Confidence            79999999999999999999988899999999999999999999   443344469754 3457663   3799999999


Q ss_pred             HHHHhhcCeEEccccCCCCCCCCCCCCccC
Q 045443          253 LRWVQKYFMIYNYCTDLKRFPQGFLLSADN  282 (284)
Q Consensus       253 ~~~vr~~~m~YdYC~D~~R~p~~~p~EC~~  282 (284)
                      |+|||+||||||||+|++|||+ +||||..
T Consensus       246 ~~~~~~~~~~y~yc~d~~r~~~-~~~ec~~  274 (278)
T 1umz_A          246 LSWVRQKYTIYNYCTDRSRYPS-MPPECKR  274 (278)
T ss_dssp             HHHHHHHTEEEEGGGCTTTCSS-CCTHHHH
T ss_pred             HHHHHHCCeEEecCCCCCcCCC-CCcccCC
Confidence            9999999999999999999998 8999963
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} SCOP: b.29.1.2 PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Back     alignment and structure
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2 Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Back     alignment and structure
>2w39_A Putative laminarinase; hydrolase, white ROT fungus, glycosyl hydrolase, GH7, GH16, LAM16A, family 16, beta-glucan, basidiomycete; HET: NAG BGC LGC; 1.10A {Phanerochaete chrysosporium} PDB: 2cl2_A* 2w52_A* 2wlq_A* 2wne_A* Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 284
d1umza_267 b.29.1.2 (A:) Xyloglucan endotransglycosylase {Eur 4e-95
d1ajka_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bac 9e-39
d1mvea_243 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fib 3e-20
d2ayha_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {syn 2e-17
d1dypa_271 b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseud 8e-09
d1o4ya_270 b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivo 7e-04
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Length = 267 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

 Score =  279 bits (714), Expect = 4e-95
 Identities = 137/252 (54%), Positives = 167/252 (66%), Gaps = 6/252 (2%)

Query: 27  SFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAG 86
           +F +++  TW     K FNGG  + L LD+ +G+GFQSK  YLFG   MQ+KLV GDSAG
Sbjct: 5   AFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAG 64

Query: 87  TVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHT 146
           TVTA+YLSSQ   HDEIDFEFLGN +GQPYIL TN+F  GKG+REQ+ YLWFDPT+ FH 
Sbjct: 65  TVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHY 124

Query: 147 YSVIWKPQHITF-----PLECSKMLNLLEFPSLKNQPMKIYSSLWNADDWATRGGLVKTD 201
           YSV+W    I F     P+   K    L      NQPMKIYSSLWNADDWATRGGL KTD
Sbjct: 125 YSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTD 184

Query: 202 WTKAPFTAYYRNFRAIPCNNCGSKRSSSSSVSDAQRQWQPRDELDATSRRRLRWVQKYFM 261
           W+KAPF A YR+F    C      +  ++  +    Q + + +LDA   RRL WV++ + 
Sbjct: 185 WSKAPFIASYRSFHIDGCEASVEAKFCATQGARWWDQKEFQ-DLDAFQYRRLSWVRQKYT 243

Query: 262 IYNYCTDLKRFP 273
           IYNYCTD  R+P
Sbjct: 244 IYNYCTDRSRYP 255
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Length = 214 Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Length = 243 Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Length = 214 Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Length = 271 Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Length = 270 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query284
d1umza_267 Xyloglucan endotransglycosylase {European aspen (P 100.0
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 100.0
d1mvea_243 Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succi 100.0
d2ayha_214 Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid 99.97
d1o4ya_270 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.93
d1dypa_271 kappa-Carrageenase, catalytic {Pseudoalteromonas c 99.93
d1upsa1266 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 99.92
d1o4za_295 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.91
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 91.23
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

Probab=100.00  E-value=3.5e-76  Score=539.65  Aligned_cols=253  Identities=54%  Similarity=0.957  Sum_probs=234.9

Q ss_pred             ccccccCceeeecCCCeEEecCCcEEEEEEeCCCCCeEEEcceeEEEEEEEEEEeeCCCCCceEeeeeeeecCCCCCeEE
Q 045443           25 VGSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEID  104 (284)
Q Consensus        25 ~~~f~~~f~~~w~~~nv~~~~~G~~l~L~ld~~~g~~i~Sk~~~~YG~~e~riKlp~g~s~G~v~Af~l~s~~~~~dEID  104 (284)
                      ..+|+++|.++|+++||++.++|..|+|+||+.+|++|+||++|+||+||||||||+|+++|++++||++++++.++|||
T Consensus         3 ~~~f~~~~~~~w~~~~v~~~~~g~~l~l~ld~~sga~i~Sk~~f~YG~~EariKlp~G~g~g~~~~f~~~s~~~~~dEID   82 (267)
T d1umza_           3 DVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQNSEHDEID   82 (267)
T ss_dssp             CCCHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECSSSSCCEEE
T ss_pred             cccCCCCceecCCCCCEEEeCCCeEEEEEECCcccCceEecceEEeeEEEEEEEcCCCCccEEEEEeeecCCCCCCCeEE
Confidence            46899999999999999999999999999999999999999999999999999999998889999999999888999999


Q ss_pred             EEEcCCCCCCCeEEEeeEEeCCCCCeeeeEeccCCCCCCcEEEEEEEeCCeEEE-----EcEEEEeccccCCCCCCCCCc
Q 045443          105 FEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHITF-----PLECSKMLNLLEFPSLKNQPM  179 (284)
Q Consensus       105 iE~lG~~~g~p~~vqtN~~~~G~~~~e~~~~l~fdp~~dFHtY~i~Wtp~~I~f-----~ir~~~~~~~~g~~~P~~~Pm  179 (284)
                      ||++|+..++++++|||+|.+|.+++++++++++||+++||+|+|+|+|++|+|     +||++++.+..+.+||.++||
T Consensus        83 iE~lG~~~~~~~~v~tn~~~~g~g~~~~~~~~~~d~s~dFHtY~i~Wtp~~I~fyVDG~~vr~~~n~~~~g~~~p~~~pm  162 (267)
T d1umza_          83 FEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPM  162 (267)
T ss_dssp             EEEECCSTTSCCEEEEEEEBTTBCCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCSCSSCB
T ss_pred             EEEecccCCcccEEEeeEeCCCCCCcceeEecCCCCccCcEEEEEEECcceEEEEECCEEEEEEeccccCCCCCCcceEE
Confidence            999999999999999999999999999999999999999999999999999999     889999988888999988999


Q ss_pred             EEEEeeecCCCccCCCCcccccCCCCCEEEEEeEEEEeeccCCCCCCCCCcccCCCCCCCCCC---ccCCHHHHHHHHHH
Q 045443          180 KIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRSSSSSVSDAQRQWQPR---DELDATSRRRLRWV  256 (284)
Q Consensus       180 ~l~lnlW~ggdWat~GG~~k~d~~~~Pf~a~~~~~~v~~c~~~~~~~~~~~c~~~~~~~w~~~---~~l~~~~~~~~~~v  256 (284)
                      +|++|||+||+|||+||++||||+++||+|+|++|+|++|   .+....++|.... ..|++.   +.|+.+|+++|+||
T Consensus       163 ~i~~niW~g~~Wat~gG~~~~d~~~aPf~a~~~~~~v~~c---~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~  238 (267)
T d1umza_         163 KIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGC---EASVEAKFCATQG-ARWWDQKEFQDLDAFQYRRLSWV  238 (267)
T ss_dssp             EEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEE---ECCSSSCCCTTTT-CSGGGSGGGSSCCHHHHHHHHHH
T ss_pred             EEEEeeeeCCCccccCCeeeecCCCCCEEEEEEEEEEEec---ccCCCCcccCCCC-CccccccccccCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999   5555556665543 345553   57999999999999


Q ss_pred             hhcCeEEccccCCCCCCCCCCCCccC
Q 045443          257 QKYFMIYNYCTDLKRFPQGFLLSADN  282 (284)
Q Consensus       257 r~~~m~YdYC~D~~R~p~~~p~EC~~  282 (284)
                      |+||||||||.|++|||. +||||..
T Consensus       239 ~~~~~~y~yC~d~~r~~~-~p~EC~~  263 (267)
T d1umza_         239 RQKYTIYNYCTDRSRYPS-MPPECKR  263 (267)
T ss_dssp             HHHTEEEEGGGCTTTCSS-CCTHHHH
T ss_pred             HHCCcEEccCCCCCcCCC-CCcccCC
Confidence            999999999999999996 7999964
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1o4za_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure