Citrus Sinensis ID: 045469
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 938 | 2.2.26 [Sep-21-2011] | |||||||
| P57740 | 925 | Nuclear pore complex prot | yes | no | 0.5 | 0.507 | 0.261 | 2e-20 | |
| P52590 | 926 | Nuclear pore complex prot | yes | no | 0.414 | 0.420 | 0.260 | 1e-18 | |
| Q8BH74 | 926 | Nuclear pore complex prot | yes | no | 0.353 | 0.358 | 0.264 | 6e-17 | |
| Q10331 | 813 | Nucleoporin nup107 OS=Sch | yes | no | 0.300 | 0.346 | 0.235 | 1e-11 |
| >sp|P57740|NU107_HUMAN Nuclear pore complex protein Nup107 OS=Homo sapiens GN=NUP107 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 148/567 (26%), Positives = 232/567 (40%), Gaps = 98/567 (17%)
Query: 51 TFALFASLLDSALQGT-EEPPVELILSPSTSHIEACQFVVN-DHTAQLCLRIVQWLEGLA 108
T+ L ASL +Q EE V + + + S + + D + +V WLE +A
Sbjct: 218 TWRLLASLYRDRIQSALEEESVFAVTAVNASEKTVVEALFQRDSLVRQSQLVVDWLESIA 277
Query: 109 SKSL-DLESKVRGSHVGTYLPNSGVWHHT--QRYLKKGVADANT-VHHLDFDAPTREHAH 164
+ + + Y N+ HT QR L V V LD DAP R+
Sbjct: 278 KDEIGEFSDNIEFYAKSVYWENT---LHTLKQRQLTSYVGSVRPLVTELDPDAPIRQKM- 333
Query: 165 QLPDDKKQDE-SLLEDVWTLLRAGRQEEACDLCRSAGQPWRAATLCPFGVIDFSPSVEAL 223
L D ++DE LL+ ++TL+RAG EEA LC+ GQ WRAATL + + P+V
Sbjct: 334 PLDDLDREDEVRLLKYLFTLIRAGMTEEAQRLCKRCGQAWRAATLEGWKLY-HDPNV--- 389
Query: 224 IKNGRSRTLQAIELESGIGHQW-RLWKWASYCTSEKIFEQRGSKFEAAIYAAQCSNLKHV 282
NG ELE G+ + R+WK + + +E ++ +++E AIYAA NLK +
Sbjct: 390 --NG------GTELEPVEGNPYRRIWKISCWRMAE---DELFNRYERAIYAALSGNLKQL 438
Query: 283 LPICTNWETACWAMAKSWLGVQLDLELARSQPGRMEQVKSFGDEIEGSPGQMNGISQPSV 342
LP+C WE WA + + ++ E+ S V + DE E P + G
Sbjct: 439 LPVCDTWEDTVWAYFRVMVDSLVEQEIQTS-------VATL-DETEELPREYLGA----- 485
Query: 343 GPESWPVQVLNQQPRDLSALLQKLHSGEMVHEVVTQVCKEQQRQIEMKLMLGNIPHVLQL 402
+W ++ + ++ LQ ++ E +E ++ L+LG+I ++
Sbjct: 486 ---NWTLEKVFEE-------LQATDKKRVLEE-----NQEHYHIVQKFLILGDIDGLMDE 530
Query: 403 IWSWIAPSEDDQNVFRPHGDPQMIRFGAHLVLVLRY--LLTDELKDPFRKDLMDAGDLII 460
W++ S R + ++RF HL+L R L T E + ++
Sbjct: 531 FSKWLSKS-------RNNLPGHLLRFMTHLILFFRTLGLQTKE----------EVSIEVL 573
Query: 461 HMYAMFLFSEHHEELVGVYASQLARHRCIDLFVHMMELRLNSSVHVKYKIFLSAMEYLPF 520
Y L E H L+ Y L + DL V L L S F L
Sbjct: 574 KTYIQLLIREKHTNLIAFYTCHLPQ----DLAVAQYALFLESVTE-----FEQRHHCLEL 624
Query: 521 SSGDDLKGSFEEIIERVLSRSREIKLGKYDK-------STDVAEQHRLQSLQKAMVIQWL 573
+ DL + I + V+ R+ G++ T E+ RL K VI WL
Sbjct: 625 AKEADLDVA--TITKTVVENIRKKDNGEFSHHDLAPALDTGTTEEDRL----KIDVIDWL 678
Query: 574 CFTPPSTIADVKDVSAKLLLRALIHSN 600
F P +K +A ++R + S
Sbjct: 679 VFDPAQRAEALKQGNA--IMRKFLASK 703
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Essential component of nuclear pore complex. Required for the assembly of peripheral proteins into the nuclear pore complex. Homo sapiens (taxid: 9606) |
| >sp|P52590|NU107_RAT Nuclear pore complex protein Nup107 OS=Rattus norvegicus GN=Nup107 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8BH74|NU107_MOUSE Nuclear pore complex protein Nup107 OS=Mus musculus GN=Nup107 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q10331|NU107_SCHPO Nucleoporin nup107 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup107 PE=1 SV=4 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 938 | ||||||
| 255576613 | 1088 | conserved hypothetical protein [Ricinus | 0.996 | 0.859 | 0.743 | 0.0 | |
| 297742971 | 895 | unnamed protein product [Vitis vinifera] | 0.928 | 0.973 | 0.792 | 0.0 | |
| 224119536 | 1096 | predicted protein [Populus trichocarpa] | 0.915 | 0.783 | 0.795 | 0.0 | |
| 356519905 | 1080 | PREDICTED: nuclear pore complex protein | 0.927 | 0.805 | 0.756 | 0.0 | |
| 30683000 | 1077 | uncharacterized protein [Arabidopsis tha | 0.963 | 0.839 | 0.728 | 0.0 | |
| 30102514 | 1077 | AT3g14120/MAG2_7 [Arabidopsis thaliana] | 0.963 | 0.839 | 0.727 | 0.0 | |
| 334185338 | 1098 | uncharacterized protein [Arabidopsis tha | 0.926 | 0.791 | 0.734 | 0.0 | |
| 297829974 | 1107 | hypothetical protein ARALYDRAFT_478826 [ | 0.926 | 0.785 | 0.731 | 0.0 | |
| 30682993 | 1101 | uncharacterized protein [Arabidopsis tha | 0.963 | 0.821 | 0.709 | 0.0 | |
| 449447928 | 1082 | PREDICTED: nuclear pore complex protein | 0.930 | 0.806 | 0.730 | 0.0 |
| >gi|255576613|ref|XP_002529197.1| conserved hypothetical protein [Ricinus communis] gi|223531375|gb|EEF33211.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1502 bits (3888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 740/995 (74%), Positives = 824/995 (82%), Gaps = 60/995 (6%)
Query: 2 QSASKRRSSIDGPGILDSDVGV-------------------------------------- 23
+SASKRR SID GI D D G+
Sbjct: 94 KSASKRRPSIDIRGISDGDFGIDSIGRLGSESLKACKIEDESLTDSGETVFGLFASLLDS 153
Query: 24 ---------DSIHRFGSQSLKACKIEDDSLTDSGETTFALFASLLDSALQG--------- 65
D I RF + SL + + AS+L L
Sbjct: 154 AIQGLMPIPDLILRFEKSCRNVAESIRSSLMHNASSAITCCASVLPDVLTKSCLMLDNLF 213
Query: 66 ---TEEPPVELILSPSTSHIEACQFVVNDHTAQLCLRIVQWLEGLASKSLDLESKVRGSH 122
TEEPP ELILSPSTSH+EACQFVVNDHTAQLCLRIVQWLEGLASK+LDLESKVRGSH
Sbjct: 214 QVMTEEPPEELILSPSTSHLEACQFVVNDHTAQLCLRIVQWLEGLASKALDLESKVRGSH 273
Query: 123 VGTYLPNSGVWHHTQRYLKKGVADANTVHHLDFDAPTREHAHQLPDDKKQDESLLEDVWT 182
VGTYLPNSG+WHHTQR+L+KG + N VHHLDFDAPTREHAHQLPDDKKQDESLLEDVW
Sbjct: 274 VGTYLPNSGIWHHTQRFLRKGASSTNIVHHLDFDAPTREHAHQLPDDKKQDESLLEDVWI 333
Query: 183 LLRAGRQEEACDLCRSAGQPWRAATLCPFGVIDFSPSVEALIKNGRSRTLQAIELESGIG 242
LLRAGR +EACDLCRSAGQPWRAATLCPFG +D +PSVEAL+KNG++RTLQAIELES IG
Sbjct: 334 LLRAGRLDEACDLCRSAGQPWRAATLCPFGGLDLTPSVEALVKNGKNRTLQAIELESVIG 393
Query: 243 HQWRLWKWASYCTSEKIFEQRGSKFEAAIYAAQCSNLKHVLPICTNWETACWAMAKSWLG 302
HQWRLWKWASYC SEKI EQ G K+E A+YAAQCS+LK +L ICT+WE+ACWAMAKSWL
Sbjct: 394 HQWRLWKWASYCASEKIAEQNGGKYEVAVYAAQCSDLKRMLQICTDWESACWAMAKSWLD 453
Query: 303 VQLDLELARSQPGRMEQVKSFGDEIEGSPGQMNGISQPSVGPESWPVQVLNQQPRDLSAL 362
VQ+DLELA S+PGRM+Q+KS+GD EGSPGQ++ + S+GPE+WP+QVLNQQPR+LSAL
Sbjct: 454 VQVDLELAHSEPGRMDQLKSYGDVSEGSPGQIDYAANNSLGPENWPLQVLNQQPRNLSAL 513
Query: 363 LQKLHSGEMVHEVVTQVCKEQQRQIEMKLMLGNIPHVLQLIWSWIAPSEDDQNVFRPHGD 422
LQKLHSGEMV+E V++ CKEQQRQIEM LMLGNIP +L LIWSWI+PS+DDQNVFRPHGD
Sbjct: 514 LQKLHSGEMVNEAVSRGCKEQQRQIEMDLMLGNIPDLLDLIWSWISPSDDDQNVFRPHGD 573
Query: 423 PQMIRFGAHLVLVLRYLLTDELKDPFRKDLMDAGDLIIHMYAMFLFSEHHEELVGVYASQ 482
PQMIRFGAHLVLVLRYLL +E+KD FR+ LM+ GDLI+HMY MFLFS+ HEELVG+YASQ
Sbjct: 574 PQMIRFGAHLVLVLRYLLAEEMKDSFREKLMNVGDLILHMYVMFLFSKQHEELVGIYASQ 633
Query: 483 LARHRCIDLFVHMMELRLNSSVHVKYKIFLSAMEYLPFSSGDDLKGSFEEIIERVLSRSR 542
LARHRC+DLFVHMMELRLNSSVHVKYKIFLS MEYLPFSS DD KGSFEEIIER+LSRSR
Sbjct: 634 LARHRCVDLFVHMMELRLNSSVHVKYKIFLSVMEYLPFSSEDDSKGSFEEIIERILSRSR 693
Query: 543 EIKLGKYDKSTDVAEQHRLQSLQKAMVIQWLCFTPPSTIADVKDVSAKLLLRALIHSNIL 602
EI++GKYDKS++VAEQHRLQSLQKAM IQWLCFTPPSTI +VKDVS KLLLRAL+HSNIL
Sbjct: 694 EIRVGKYDKSSEVAEQHRLQSLQKAMAIQWLCFTPPSTIENVKDVSFKLLLRALMHSNIL 753
Query: 603 FREFALISMWRVPAMPIGAHELLSFLAEPLKQLSENPDTLEDNVSENLKEFQDWSEYYSC 662
FREFALISMWRVPAMPIGAH LL+ LAEPLKQLSE PDTLED VSENLKEFQDWSEYYSC
Sbjct: 754 FREFALISMWRVPAMPIGAHALLTLLAEPLKQLSEVPDTLEDYVSENLKEFQDWSEYYSC 813
Query: 663 DATYRKWLKIELENANVPALELSLEEKQRAIAAAQETLNMSLILLQRKENPWLVSLEDPI 722
DATYR WLKIELENA VP ELSLEEKQR+I AAQETLN SL+LL RKENPWL S+ED
Sbjct: 814 DATYRSWLKIELENA-VPPPELSLEEKQRSITAAQETLNSSLLLLLRKENPWLASVEDHA 872
Query: 723 YESVEALYLELHATAILCLPSGECLSPDATMCTALMSALYSTLSEEVVLNRELMVNVSIS 782
YES L+LELHATA+LC PSGEC+ PDAT+CTALMSALYS++SEE VL+R+LMVNV+IS
Sbjct: 873 YESAAPLFLELHATAMLCHPSGECMCPDATICTALMSALYSSVSEETVLHRQLMVNVAIS 932
Query: 783 SSNNYCIEVVLRCLAVEGDGLGIHDMSDGGVLGTVMAAGFKGELTRFQAGVTMEICRLDA 842
S +NYCIEVVLRCLAVEGDGLG H +DGG+L TVMAAGFKGEL RFQAGVTMEI RLDA
Sbjct: 933 SRDNYCIEVVLRCLAVEGDGLGCHQANDGGILATVMAAGFKGELARFQAGVTMEISRLDA 992
Query: 843 WYSSKEGSLEGPATFIVRGLCRRCCLPELILRCMQVSISLVELGNQIENHDELIELVACS 902
WYSS EGSLE PATF+++GLCR+CCLPE+ILRCMQVS+SL+E GN ENHD+LIELVAC
Sbjct: 993 WYSSAEGSLEEPATFVIQGLCRKCCLPEVILRCMQVSVSLMESGNPPENHDDLIELVACP 1052
Query: 903 ESGFLHLFSQQQLQEFLLFEREYAICKMEPEEESS 937
E+GFLHLFSQQQLQEFLLFEREY++ KME EEE S
Sbjct: 1053 ETGFLHLFSQQQLQEFLLFEREYSVVKMELEEELS 1087
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742971|emb|CBI35838.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224119536|ref|XP_002331185.1| predicted protein [Populus trichocarpa] gi|222873306|gb|EEF10437.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356519905|ref|XP_003528609.1| PREDICTED: nuclear pore complex protein Nup107-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|30683000|ref|NP_850581.1| uncharacterized protein [Arabidopsis thaliana] gi|332641952|gb|AEE75473.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|30102514|gb|AAP21175.1| AT3g14120/MAG2_7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|334185338|ref|NP_001189889.1| uncharacterized protein [Arabidopsis thaliana] gi|332641953|gb|AEE75474.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297829974|ref|XP_002882869.1| hypothetical protein ARALYDRAFT_478826 [Arabidopsis lyrata subsp. lyrata] gi|297328709|gb|EFH59128.1| hypothetical protein ARALYDRAFT_478826 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|30682993|ref|NP_188028.2| uncharacterized protein [Arabidopsis thaliana] gi|22654979|gb|AAM98082.1| AT3g14120/MAG2_7 [Arabidopsis thaliana] gi|332641951|gb|AEE75472.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449447928|ref|XP_004141718.1| PREDICTED: nuclear pore complex protein Nup107-like [Cucumis sativus] gi|449480479|ref|XP_004155905.1| PREDICTED: nuclear pore complex protein Nup107-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 938 | ||||||
| TAIR|locus:2087477 | 1101 | AT3G14120 [Arabidopsis thalian | 0.804 | 0.685 | 0.750 | 0.0 | |
| ZFIN|ZDB-GENE-041210-245 | 919 | nup107 "nucleoporin 107" [Dani | 0.253 | 0.258 | 0.317 | 7.2e-19 | |
| UNIPROTKB|F1NH49 | 920 | F1NH49 "Uncharacterized protei | 0.222 | 0.227 | 0.307 | 3e-18 | |
| UNIPROTKB|F1P0A8 | 924 | F1P0A8 "Uncharacterized protei | 0.222 | 0.226 | 0.307 | 3.1e-18 | |
| DICTYBASE|DDB_G0285579 | 985 | nup107 "nucleoporin 107" [Dict | 0.123 | 0.117 | 0.294 | 2e-17 | |
| UNIPROTKB|F1SH64 | 922 | F1SH64 "Uncharacterized protei | 0.216 | 0.220 | 0.333 | 8.2e-17 | |
| UNIPROTKB|Q6PJE1 | 686 | NUP107 "NUP107 protein" [Homo | 0.206 | 0.282 | 0.337 | 2.1e-16 | |
| RGD|621160 | 926 | Nup107 "nucleoporin 107" [Ratt | 0.208 | 0.211 | 0.336 | 6e-16 | |
| UNIPROTKB|F6V153 | 925 | NUP107 "Uncharacterized protei | 0.206 | 0.209 | 0.337 | 9.9e-16 | |
| UNIPROTKB|B4DZ67 | 896 | NUP107 "Nuclear pore complex p | 0.206 | 0.216 | 0.337 | 2e-15 |
| TAIR|locus:2087477 AT3G14120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3026 (1070.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 572/762 (75%), Positives = 654/762 (85%)
Query: 64 QGTEEPPVELILSPSTSHIEACQFVVNDHTAQLCLRIVQWLEGLASKSLDLESKVRGSHV 123
+GT+E P LIL PSTSH+EACQFV+NDHTAQLCLRIV WLE LASKSLDLE KV+GSHV
Sbjct: 207 KGTDEVPENLILIPSTSHLEACQFVLNDHTAQLCLRIVMWLEELASKSLDLERKVQGSHV 266
Query: 124 GTYLPNSGVWHHTQRYLKKGVADANTVHHLDFDAPTREHAHQLPDDKKQDESLLEDVWTL 183
GTYLPN+GVWHHTQRYLKK ++A+T+HHLDFDAPTREHA LPDD KQDES+LEDVWTL
Sbjct: 267 GTYLPNAGVWHHTQRYLKKNGSNADTLHHLDFDAPTREHARLLPDDYKQDESVLEDVWTL 326
Query: 184 LRAGRQEEACDLCRSAGQPWRAATLCPFGVIDFSPSVEALIKNGRSRTLQAIELESGIGH 243
+RAGR EEACDLCRSAGQ WRAATLCPF +D PS+EAL+KNG +RTLQAIE ESG G+
Sbjct: 327 IRAGRIEEACDLCRSAGQSWRAATLCPFSGMDMFPSIEALVKNGENRTLQAIEQESGFGN 386
Query: 244 QWRLWKWASYCTSEKIFEQRGSKFEAAIYAAQCSNLKHVLPICTNWETACWAMAKSWLGV 303
Q RLWKWASYC SEKI EQ G K E A++A QCSNL +LPICT+WE+ACWAMAKSWL V
Sbjct: 387 QLRLWKWASYCASEKIAEQDGGKHEVAVFATQCSNLNRMLPICTDWESACWAMAKSWLDV 446
Query: 304 QLDLELARSQPGRMEQVKSFGDEIEGSP-GQMNGISQPSVGPESWPVQVLNQQPRDLSAL 362
Q+DLELA+S+PG E+ KS DE SP NG Q S GPE WP+ VLNQQPRDL AL
Sbjct: 447 QVDLELAQSKPGLTERFKSCIDE---SPEATQNGC-QASFGPEDWPLHVLNQQPRDLPAL 502
Query: 363 LQKLHSGEMVHEVVTQVCKEQQRQIEMKLMLGNIPHVLQLIWSWIAPSEDDQNVFRPHGD 422
LQKLHSGEMVHE V + CKEQ RQI+M LMLG+I H+L +IWSWIAP EDDQ+ FRPHGD
Sbjct: 503 LQKLHSGEMVHEAVVRGCKEQHRQIQMNLMLGDISHLLDIIWSWIAPLEDDQSNFRPHGD 562
Query: 423 PQMIRFGAHLVLVLRYLLTDELKDPFRKDLMDAGDLIIHMYAMFLFSEHHEELVGVYASQ 482
P MI+FGAH+VLVLR L TDE+ D F++ L + GDLI+HMYAMFLFS+ HEELVG+YASQ
Sbjct: 563 PHMIKFGAHMVLVLRLLFTDEINDSFKEKLNNVGDLILHMYAMFLFSKQHEELVGIYASQ 622
Query: 483 LARHRCIDLFVHMMELRLNSSVHVKYKIFLSAMEYLPFSSGDDLKGSFEEIIERVLSRSR 542
LARHRCI+LFVHMMELR++SSVHVKYKIFLSAMEYL FS DDL G+FEEI++RVLSRSR
Sbjct: 623 LARHRCIELFVHMMELRMHSSVHVKYKIFLSAMEYLSFSPVDDLHGNFEEIVDRVLSRSR 682
Query: 543 EIKLGKYDKSTDVAEQHRLQSLQKAMVIQWLCFTPPSTIADVKDVSAKLLLRALIHSNIL 602
EIKL KYD S DVAEQHR QSLQKA+ IQWLCFTPPSTI DVKDV++KLLLR+L+HSNIL
Sbjct: 683 EIKLAKYDPSIDVAEQHRQQSLQKAIAIQWLCFTPPSTIKDVKDVTSKLLLRSLMHSNIL 742
Query: 603 FREFALISMWRVPAMPIGAHELLSFLAEPLKQLSENPDTLEDNVSENLKEFQDWSEYYSC 662
FREFALI+MWRVPA P+GAH LLS+LAEPLKQLSENPDTLED VSENL+EFQDW+EYYSC
Sbjct: 743 FREFALIAMWRVPATPVGAHTLLSYLAEPLKQLSENPDTLEDYVSENLQEFQDWNEYYSC 802
Query: 663 DATYRKWLKIELENANVPALELSLEEKQRAIAAAQETLNMSLILLQRKENPWLVSLEDPI 722
DA YR WLK +LENA V ELS EE Q+A+ AA+ETL+ SL LL R++NPW+ LED +
Sbjct: 803 DAKYRNWLKFQLENAEVT--ELSEEENQKAVVAAKETLDSSLSLLLRQDNPWMTFLEDHV 860
Query: 723 YESVEALYLELHATAILCLPSGECLSPDATMCTALMSALYSTLSEEVVLNRELMVNVSIS 782
+ES E L+LELHATA+LCLPSGECL PDAT+C ALMSALYS++SEEVVL+R+LMVNVSIS
Sbjct: 861 FESEEYLFLELHATAMLCLPSGECLRPDATVCAALMSALYSSVSEEVVLDRQLMVNVSIS 920
Query: 783 SSNNYCIEVVLRCLAVEGDGLGIHDMSDGGVLGTVMAAGFKG 824
S ++YCIEVVLRCLA++GDGLG H+ +DGG+L V AAGFKG
Sbjct: 921 SRDSYCIEVVLRCLAIKGDGLGPHNANDGGILSAVAAAGFKG 962
|
|
| ZFIN|ZDB-GENE-041210-245 nup107 "nucleoporin 107" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NH49 F1NH49 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P0A8 F1P0A8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0285579 nup107 "nucleoporin 107" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SH64 F1SH64 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q6PJE1 NUP107 "NUP107 protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| RGD|621160 Nup107 "nucleoporin 107" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F6V153 NUP107 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B4DZ67 NUP107 "Nuclear pore complex protein Nup107" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 938 | |||
| pfam04121 | 685 | pfam04121, Nup84_Nup100, Nuclear pore protein 84 / | 2e-23 |
| >gnl|CDD|217909 pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107 | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-23
Identities = 95/393 (24%), Positives = 149/393 (37%), Gaps = 69/393 (17%)
Query: 100 IVQWLEGLASKSLDLESKVRGSHVGTYLPNSGVWHHT--QRYLKKGVADANT-VHHLDFD 156
IV WLE S + ++ + + W +T K + T V LD D
Sbjct: 62 IVDWLE---SNAKSVDRPDNLHYETSK------WENTLHALANKDLGSLGGTLVKSLDPD 112
Query: 157 APTREHAHQLPDDKKQDESLLEDVWTLLRAGRQEEACDLCRSAGQPWRAATLCPFGVIDF 216
AP RE D++ D L + ++ L+RAGR +EA +LC G W AA L G +
Sbjct: 113 APLREKRPLHDLDREDDSRLFKYIFELIRAGRIDEALELCELTGNLWLAAILE--GWQLY 170
Query: 217 SPSVEALIKNGRSRTLQAIELESGIGHQWRLWKWASYCTSEKIFEQRG-SKFEAAIYAAQ 275
V+ I S + E G + LWK Y K+ + K+E AIY
Sbjct: 171 ---VDPNIDKELSNEFEKQE---GNKRR-DLWKRTVY----KLSQNSNLDKYERAIYGYL 219
Query: 276 CSNLKHVLPIC-TNWETACWAMAKSWLGVQLDLELARSQPGRMEQVKSFGDEIEGSPGQM 334
+L +L + +WE WA + ++++ E+ S E E+ +
Sbjct: 220 SGDLPSLLEVSGDSWEDTLWAYLNQIIDIRVENEIRSSGRVSYE-------ELPIPSPYL 272
Query: 335 NGISQPSVGPESWPVQVLNQQPRDLSALLQKLHSGEMVHEVVTQVCKEQQRQIEMKLMLG 394
NG Q+LN L + V + + R I+ ++L
Sbjct: 273 NGKMTLE--------QILN--------ELNSSSAR------VPEESEHPLRVIQGSVILN 310
Query: 395 NIPHVLQLIWSW----IAPSEDDQNVFRPHGDPQMIRFGAHLVLVLRYLLTDELKDPFRK 450
IP ++ W I+ +E + V P ++R HLVL LR + P K
Sbjct: 311 TIPELIHSSVDWLENVISGTEQENEVLLE---PYLLRVLTHLVLFLRII------GPQGK 361
Query: 451 DLMDAGDLIIHMYAMFLFSEHHEELVGVYASQL 483
+ +I Y L + EL+ +Y S L
Sbjct: 362 EEESDKTKLITAYVSLLSAYGLAELIPIYVSFL 394
|
Nup84p forms a complex with five proteins, of which Nup120p, Nup85p, Sec13p, and a Sec13p homologues. This Nup84p complex in conjunction with Sec13-type proteins is required for correct nuclear pore biogenesis. Length = 685 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 938 | |||
| PF04121 | 697 | Nup84_Nup100: Nuclear pore protein 84 / 107 ; Inte | 100.0 | |
| KOG1964 | 800 | consensus Nuclear pore complex, rNup107 component | 100.0 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 96.77 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 96.47 | |
| PF12110 | 290 | Nup96: Nuclear protein 96; InterPro: IPR021967 Nup | 94.88 | |
| KOG2168 | 835 | consensus Cullins [Cell cycle control, cell divisi | 93.31 |
| >PF04121 Nup84_Nup100: Nuclear pore protein 84 / 107 ; InterPro: IPR007252 Nup84p forms a complex with five proteins, including Nup120p, Nup85p, Sec13p, and a Sec13p homolog | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-106 Score=969.20 Aligned_cols=540 Identities=29% Similarity=0.461 Sum_probs=348.1
Q ss_pred cchhhhhHHHHHHHHHHhhccCCCCCCccccCCCCCcHHHH-HHHhhcchhHHHHHHHHHHHHHhhccCcchhhhhcCCC
Q 045469 44 LTDSGETTFALFASLLDSALQGTEEPPVELILSPSTSHIEA-CQFVVNDHTAQLCLRIVQWLEGLASKSLDLESKVRGSH 122 (938)
Q Consensus 44 ~~e~Ea~TW~Ll~~L~~~R~~~~~e~~~~~~~~~ysS~~~~-~~fL~~D~~~rE~~iVl~WLE~~A~~~~d~e~~vrg~~ 122 (938)
.||+|++||+||.+||++|++..++........+|+|++++ ++|+.+|+.++|+++|++|||+||+.. +..+
T Consensus 5 ~~~lE~~tW~Ll~~L~~~R~~~~~~~~~~~~~~~~~S~~~~~~~~~~~d~~~~e~~~v~~WLe~~a~~~-~~~~------ 77 (697)
T PF04121_consen 5 NWELEANTWDLLERLYSDRYSEEEEDQEEEQIEPYSSEREIWEQLLESDPELRELQIVLDWLESNAAEE-ERPD------ 77 (697)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS-TTT---SS--TTS-HHHHHHHHHHH-HHHHHHHHHHHHHHHT--------S------
T ss_pred HHHHHHHHHHHHHHHHHhcccCcccchhhhccCCCCCHHHHHHHHHHhCHHHHHHHHHHHHHHhhCcCC-CCCc------
Confidence 69999999999999999999876555443223399999999 999999999999999999999999874 2221
Q ss_pred ccccCCCCCCchhhHHHHHcCC-----CCCCCccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 045469 123 VGTYLPNSGVWHHTQRYLKKGV-----ADANTVHHLDFDAPTREHAHQLPDDKKQDESLLEDVWTLLRAGRQEEACDLCR 197 (938)
Q Consensus 123 ~g~~~~~~~~W~nT~~aLK~~~-----~~~~lVtqLDPDAP~Rq~~~L~~~D~~~E~~l~k~if~LLRaGrleeA~elC~ 197 (938)
...+..++++|.||+++||+++ .+.++||+||||||+||+++|||+|+++|+++|++||+|||+|++++|++||+
T Consensus 78 ~~~~~~~~~~W~~T~~~ik~~~~~~~~~~~~lV~~LDpDAp~R~~~~L~~~D~~~e~~~~~~i~~llR~G~~~eA~~lc~ 157 (697)
T PF04121_consen 78 NEPYEDRTHGWENTLHAIKQKRLRALPSPNPLVTQLDPDAPLRQGRRLHPKDEEDERALLKYIFELLRAGRIEEAQELCR 157 (697)
T ss_dssp S------SSTTHHHHHT-------------SSHSHHSTTHHHHSGGGS-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccccccccCcchhhhHHhhccchhccccccCcCcccCCCCCcccCCCCChhhHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2344467899999999999642 23589999999999999999999999999999999999999999999999999
Q ss_pred HcCCcchhhhcCcCCccCCC--CchHHHhhccCcchhhhhhhcccCCchhH-HHHHHHHhhhHHHhhhcCChHHHHHHHH
Q 045469 198 SAGQPWRAATLCPFGVIDFS--PSVEALIKNGRSRTLQAIELESGIGHQWR-LWKWASYCTSEKIFEQRGSKFEAAIYAA 274 (938)
Q Consensus 198 ~~Gq~WRAASL~g~GG~~~~--P~~d~~~~n~~~~~l~~~e~e~~~Gn~r~-LWK~~~~C~s~kla~~~~~~YERAIYga 274 (938)
++||+||||||+ |+++| |++++... .+.+...||+++ |||++||++|+ ++++++|||||||+
T Consensus 158 ~~gq~wrAasL~---G~~~~~dp~~~~~~~---------~~~~~~~G~~~r~LWk~~c~~ls~---~~~~~~yEraiY~~ 222 (697)
T PF04121_consen 158 ERGQPWRAASLC---GWQLYHDPNLDPELS---------DEDERMEGNRSRALWKRACYKLSQ---NPNLDPYERAIYGA 222 (697)
T ss_dssp HTT-HHHHHHHH---TTSB-B-TTTSGGGT---------TT-SS-BSBTTHHHHHHHHHHHHH---TSSS-HHHHHHHHH
T ss_pred HCCCHHHHHHHc---CccccCCcccccccc---------cccccccCChhHHHHHHHHHHHHh---CCCCCHHHHHHHHH
Confidence 999999999999 57776 66542111 112344799965 99987775543 78999999999999
Q ss_pred HcCCCccccccc-CCHHHHHHHHHHHHHHHHHHHHHHhhCCCccccccccCcccCCCCCCCCCCCCCCCCCCCCchhccc
Q 045469 275 QCSNLKHVLPIC-TNWETACWAMAKSWLGVQLDLELARSQPGRMEQVKSFGDEIEGSPGQMNGISQPSVGPESWPVQVLN 353 (938)
Q Consensus 275 LsGdl~~vL~vC-~SWED~LWAy~nall~~rvd~~L~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~w~~~~l~ 353 (938)
||||+++++|+| .||||+||||+|++++++||+||.+.++..... . .+.|..+|+
T Consensus 223 L~G~~~~~l~~~~~sWeD~lwa~~n~~l~~~~d~~l~~~~~~~~~~------------------~-~~lP~~~~~----- 278 (697)
T PF04121_consen 223 LSGDLSSVLPVCSSSWEDYLWAYLNALLESRVDQELRSHCPKSSEE------------------L-LPLPSPQWN----- 278 (697)
T ss_dssp HHTS---HHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTSS-GGG--------------------S-------------
T ss_pred HhcccHhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCchh------------------h-ccCCchhhh-----
Confidence 999999999999 999999999999999999999999887543210 0 234444553
Q ss_pred CChhhHHHHHHHHhcCcCcchhhhhhhhhHHHHHHHHHHhCChhHHHHHHHHhhcCCCC---CcCCCCCCCCCChHHHHH
Q 045469 354 QQPRDLSALLQKLHSGEMVHEVVTQVCKEQQRQIEMKLMLGNIPHVLQLIWSWIAPSED---DQNVFRPHGDPQMIRFGA 430 (938)
Q Consensus 354 ~~p~sl~~iL~~L~s~~~~~~~v~~Ea~~P~rvIQ~~IIl~~i~~Ll~~~~~~l~~~~~---~~~~l~~~~~p~lLRfla 430 (938)
++.++++||+.|+++ .+++++.|+++|||+||++||+|+++.|++++..|+.+... +++. ...+||+|||+|
T Consensus 279 -~~~~~~~il~~L~~~--~~~~~~~ea~~p~r~iq~~ii~~~i~~ll~~~~~~L~~~~~~~~~~~~--~~~~~~~LRf~a 353 (697)
T PF04121_consen 279 -QERSLESILNELSSS--SNERVREEARNPYRVIQAAIILNDIDSLLESFAEWLSDAAKGSEDSND--LLEDPHLLRFLA 353 (697)
T ss_dssp -----HHHHHHHH------HHHSHHHHHSTTHHHHHHHHCS-HHHHHHHHHHCTHH-------------TTSHHHHHHHH
T ss_pred -hcccHHHHHHHHHhc--cchhHHHHhhChHHHHHHHHHHccHHHHHHHHHHHHHhhccccccccc--ccccHhHHHHHH
Confidence 356899999999654 47899999999999999999999999999999999965421 1122 246899999999
Q ss_pred HHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHHHHhCCCcchHhhhhccCCchhhHHHHHHHhhhhcCchhhHHHHH
Q 045469 431 HLVLVLRYLLTDELKDPFRKDLMDAGDLIIHMYAMFLFSEHHEELVGVYASQLARHRCIDLFVHMMELRLNSSVHVKYKI 510 (938)
Q Consensus 431 HLvLfLr~l~~~~~~~~~~e~~~~~~~~II~aYI~~L~~~g~~eLIplYaS~Lp~~~~ie~ys~~Ls~i~d~s~~~k~~~ 510 (938)
||+||++.+|+....+ ....++||++||++|+.+|+++|||+|||+||+++++++||+||.+++|+++|.++
T Consensus 354 Hl~L~lr~l~~~~~~~------~~~~~~II~~Yi~~L~~~~~~~LIplY~S~L~~~~~~e~ys~~L~~i~d~~~R~~~-- 425 (697)
T PF04121_consen 354 HLILFLRSLGPSDQED------DSDKENIITAYISYLRSAGLYELIPLYASFLPEERAIEVYSRFLISITDPEEREKQ-- 425 (697)
T ss_dssp HHHHHHHHHST-TSS-------HHHHHHHHHHHHHHHHHTT-GGGHHHHHTTGGGGGG----------------------
T ss_pred HHHHHHHHhcCcCccc------hhHHHHHHHHHHHHHHHCCCcccHHHHHccCCHHHHHHHHHHHHHhcCChHHHHHH--
Confidence 9999999999743222 12446699999999999999999999999999999999999999999999998765
Q ss_pred HHHHhhhCCCCCCCCccchHHHHHHHHHhhhhhhccCCcCCCc-------chhhhhchhhhhhhhhhccccccCCCccch
Q 045469 511 FLSAMEYLPFSSGDDLKGSFEEIIERVLSRSREIKLGKYDKST-------DVAEQHRLQSLQKAMVIQWLCFTPPSTIAD 583 (938)
Q Consensus 511 fle~~~~l~~~~~~~~~~~l~~I~kr~ve~~r~~~~~~~d~~~-------dVse~~r~~D~~li~aieWL~f~p~~~~~~ 583 (938)
|+.++. .+..+.+|+|+||++++.++...|.+.. .|++ .|.++|+||+|| |+|.
T Consensus 426 -L~la~~--------~gld~~~i~k~~v~~v~~~~~~~~~~~~~~~~~~~~vs~----~D~~lI~sleWL-~~~~----- 486 (697)
T PF04121_consen 426 -LELAKK--------LGLDVSAILKRTVERVFEDTESKYPPENDISVDDDEVSE----EDERLIRSLEWL-FDPE----- 486 (697)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHH-HSGG-----
T ss_pred -HHHHHH--------cCCCHHHHHHHHHHHHHhccccccccCccccccCCCCCH----HHHHHHHHHHHH-cCcc-----
Confidence 466766 4555899999999999988888776542 3444 599999999999 8885
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhcCcCCCCccchhHHhhhhhhh--hhh--ccCCCCCCC--cchHhhHHHHHhHH
Q 045469 584 VKDVSAKLLLRALIHSNILFREFALISMWRVPAMPIGAHELLSFLAEP--LKQ--LSENPDTLE--DNVSENLKEFQDWS 657 (938)
Q Consensus 584 ~~~~~~kl~~dAL~~sN~LiR~FLl~~~~kv~al~~~~~~ll~lL~e~--~~~--l~~~~~~~e--~~~~~~i~E~~~y~ 657 (938)
+|.||+.++|+|+|+||++ ||+.|.+. +.+.++-. ++. .....+... ++++++++||+||+
T Consensus 487 -------~~~eAl~~~n~l~R~FL~~--gkl~AAr~----l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~E~~~y~ 553 (697)
T PF04121_consen 487 -------QYPEALKQANALYRRFLLN--GKLAAARE----LFERLPFDSLIKNYSLQLQEDDLSSEEESENAIREYLCYR 553 (697)
T ss_dssp -------GHHHHHHHHHHHHHHHHHT--T-HHHHHH----HHHHS-TTHHHHHHHT--------HHHH--HHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHHHHHc--CCHHHHHH----HHHhCCHHHHHHHHhhcccccCCCCcchHHHHHHHHHHHH
Confidence 5779999999999999988 66764433 33322211 011 111112222 33678999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045469 658 EYYSCDATYRKWLKIEL 674 (938)
Q Consensus 658 ~yl~~~~~~~~W~k~~~ 674 (938)
.|++++++|++|+++++
T Consensus 554 ~ll~a~~~~~~W~~~~~ 570 (697)
T PF04121_consen 554 ALLEALDAFEEWFKLFS 570 (697)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999999976
|
This Nup84p complex in conjunction with Sec13-type proteins is required for correct nuclear pore biogenesis [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 3CQC_A 3CQG_A 3I4R_A 3IKO_I 3JRO_C. |
| >KOG1964 consensus Nuclear pore complex, rNup107 component (sc Nup84) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
| >PF12110 Nup96: Nuclear protein 96; InterPro: IPR021967 Nup96 (often known by the name of its yeast homologue Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex | Back alignment and domain information |
|---|
| >KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C Length = 460 | Back alignment and structure |
|---|
Score = 223 bits (568), Expect = 4e-64
Identities = 66/453 (14%), Positives = 150/453 (33%), Gaps = 82/453 (18%)
Query: 51 TFALFASLLDSALQGTEEPPVELILSPSTSHIEACQ-FVVNDHTAQLCLRIVQWLEGLAS 109
+ L LL + + E+ L P S + + ++ ++ WL+
Sbjct: 74 FWHLVELLLV--FRNADLDLDEMELHPYNSRGLFEKKLMQDNKQLYQIWIVMVWLKENT- 130
Query: 110 KSLDLESKVRGSHVGTYLPNSGVWHHTQRYLKKGVADANTVHHLDFDAPTREHAHQL-PD 168
++ V S W ++ + + D D P RE+ + L
Sbjct: 131 YVMERPKNVPTSK----------WLNSIT--------SGGLKSCDLDFPLRENTNVLDVK 172
Query: 169 DKKQDESLLEDVWTLLRAGRQEEACDLCRSAGQPWRAATLCPFGVIDFS-PSVEALIKNG 227
DK++D + ++ L+ AG +EA + + + LC G+ ++ P ++ I N
Sbjct: 173 DKEEDHIFFKYIYELILAGAIDEALEEAKLSDNISICMILC--GIQEYLNPVIDTQIAN- 229
Query: 228 RSRTLQAIELESGIGHQWR-LWKWASYCTSEKIFEQRGSKFEAAIYAAQCSNLKHVLPIC 286
E + G + LW+ Y S+ + +E AIY+ + + +
Sbjct: 230 --------EFNTQQGIKKHSLWRRTVYSLSQ---QAGLDPYERAIYSYLSGAIPNQEVLQ 278
Query: 287 -TNWETACWAMAKSWLGVQLDLELARSQPGRMEQVKSFGDEIEGSPGQMNGISQPSVGPE 345
++WE+ L +++ L + +++
Sbjct: 279 YSDWESDLHIHLNQILQTEIENYLLENNQVGTDEL-----------------------IL 315
Query: 346 SWPVQVLNQQPRDLSALLQKLHSGEMVHEVVTQVCKEQQRQIEMKLMLGNIPHVLQLIWS 405
P + +L ++ S + R + ++L ++P V+
Sbjct: 316 PLP-----SHALTVQEVLNRVASR------HPSESEHPIRVLMASVILDSLPSVIHSSVE 364
Query: 406 WIA-PSEDDQNVFRPHGDPQMIRFGAHLVLVLRYLLTDELKDPFRKDLMDAGDLIIHMYA 464
+ + + P ++R HL + L + +++ +I Y
Sbjct: 365 MLLDVVKGTEASNDIIDKPYLLRIVTHLAICLDIINPGSVEE-------VDKSKLITTYI 417
Query: 465 MFLFSEHHEELVGVYASQLARHRCIDLFVHMME 497
L + E + +YA+ L C++ ++
Sbjct: 418 SLLKLQGLYENIPIYATFLNESDCLEACSFILS 450
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A Length = 270 | Back alignment and structure |
|---|
| >3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A Length = 270 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 938 | |||
| 3iko_C | 460 | Nucleoporin NUP84; NPC, transport, WD repeat, auto | 100.0 | |
| 3cqc_A | 270 | Nuclear pore complex protein NUP107; nucleoporin, | 99.71 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 95.15 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 92.11 | |
| 3f3f_C | 570 | Nucleoporin NUP85; structural protein, protein com | 91.91 | |
| 3bg1_B | 442 | Nucleoporin NUP145; NPC, transport, WD repeat, aut | 91.22 | |
| 2pm7_A | 399 | Protein WEB1, protein transport protein SEC31; bet | 83.46 | |
| 3cqc_A | 270 | Nuclear pore complex protein NUP107; nucleoporin, | 82.5 |
| >3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-89 Score=786.22 Aligned_cols=410 Identities=17% Similarity=0.240 Sum_probs=322.0
Q ss_pred CCCcchhHHHH----Hhhhhhhhccccc-----Cc-cchhhhhHHHHHHHHHHhhccCCCCCCccccCCCCCcHHHH-HH
Q 045469 18 DSDVGVDSIHR----FGSQSLKACKIED-----DS-LTDSGETTFALFASLLDSALQGTEEPPVELILSPSTSHIEA-CQ 86 (938)
Q Consensus 18 ~~~~~~~~~r~----~~~~alk~~~~~~-----~~-~~e~Ea~TW~Ll~~L~~~R~~~~~e~~~~~~~~~ysS~~~~-~~ 86 (938)
.+-|||+++++ ++.++++..+..+ +. .|++|++||+||..||++|.+..+++ ...++||+|++++ ++
T Consensus 31 ~~~d~~~lv~~~~~i~~~~~~~~~~~~~~~~~~~~~~w~lE~~tW~Ll~~Ly~~R~~~~~~~--~~~~~~y~S~~~~~~~ 108 (460)
T 3iko_C 31 NPIDPFNIIREFRSAAGQLALDLANSGDESNVISSKDWELEARFWHLVELLLVFRNADLDLD--EMELHPYNSRGLFEKK 108 (460)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCTTSCHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhccccccc--ccccCCCCCHHHHHHH
Confidence 47899999998 6777766655321 23 79999999999999999999765543 3467999999999 99
Q ss_pred HhhcchhHHHHHHHHHHHHHhhccCcchhhhhcCCCccccCCCCCCchhhHHHHHcCCCCCCCccccCCCCCCCCC-CCC
Q 045469 87 FVVNDHTAQLCLRIVQWLEGLASKSLDLESKVRGSHVGTYLPNSGVWHHTQRYLKKGVADANTVHHLDFDAPTREH-AHQ 165 (938)
Q Consensus 87 fL~~D~~~rE~~iVl~WLE~~A~~~~d~e~~vrg~~~g~~~~~~~~W~nT~~aLK~~~~~~~lVtqLDPDAP~Rq~-~~L 165 (938)
|+.+|+.++|+++|++|||+||+.+ +.. .+++ +++|+||+++ +.||+||||||+||+ ++|
T Consensus 109 l~~~d~~lre~~lI~~WLE~~a~~~-~~~---------~~l~-~~~W~~T~~~--------g~v~~LDPDAp~R~~~~~L 169 (460)
T 3iko_C 109 LMQDNKQLYQIWIVMVWLKENTYVM-ERP---------KNVP-TSKWLNSITS--------GGLKSCDLDFPLRENTNVL 169 (460)
T ss_dssp HHHHCHHHHHHHHHHHHHHHTCCCC-CCC---------SSCC-SSTTHHHHHT--------SCCSCCSTTHHHHSCGGGS
T ss_pred HHHhCHHHHHHHHHHHHHHHhCccc-ccc---------cccc-ccchhhhhhc--------CCCcccCCCcccccCCCCC
Confidence 9999999999999999999999875 322 1222 5899999996 569999999999998 999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHcCCcchhhhcCcCCccCCC--CchHHHhhccCcchhhhhhhcccCCc
Q 045469 166 LPDDKKQDESLLEDVWTLLRAGRQEEACDLCRSAGQPWRAATLCPFGVIDFS--PSVEALIKNGRSRTLQAIELESGIGH 243 (938)
Q Consensus 166 ~~~D~~~E~~l~k~if~LLRaGrleeA~elC~~~Gq~WRAASL~g~GG~~~~--P~~d~~~~n~~~~~l~~~e~e~~~Gn 243 (938)
||+|+++|++||++||+|||+|++++|++||+++||+||||||| |+++| |++++...+ +.+..+||
T Consensus 170 ~~~D~~~e~~l~~~i~~liR~G~~~eA~~lc~~~gq~WRAasL~---G~~~~~dP~~~~~~~~---------e~~~~~Gn 237 (460)
T 3iko_C 170 DVKDKEEDHIFFKYIYELILAGAIDEALEEAKLSDNISICMILC---GIQEYLNPVIDTQIAN---------EFNTQQGI 237 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHH---TTSBCBCTTTSGGGTT---------TCSSCBSB
T ss_pred CcccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHc---ccccccCccccccccc---------ccccccCc
Confidence 99999999999999999999999999999999999999999998 56676 777542111 23445799
Q ss_pred hhH-HHHHHHHhhhHHHhhhcCChHHHHHHHHHcCCCccccc--ccCCHHHHHHHHHHHHHHHHHHHHHHhhCCCccccc
Q 045469 244 QWR-LWKWASYCTSEKIFEQRGSKFEAAIYAAQCSNLKHVLP--ICTNWETACWAMAKSWLGVQLDLELARSQPGRMEQV 320 (938)
Q Consensus 244 ~r~-LWK~~~~C~s~kla~~~~~~YERAIYgaLsGdl~~vL~--vC~SWED~LWAy~nall~~rvd~~L~~~~~~~~~~~ 320 (938)
+++ |||++||++|+ ++++++|||||||+||||++++++ +| ||||+||||||++++++||+||.+.++....
T Consensus 238 ~~r~LWkr~c~~lA~---~~~~~~yERAvY~~LsG~l~s~~~~~~~-sWeD~Lway~n~ll~~~vd~~l~~~~~~~~~-- 311 (460)
T 3iko_C 238 KKHSLWRRTVYSLSQ---QAGLDPYERAIYSYLSGAIPNQEVLQYS-DWESDLHIHLNQILQTEIENYLLENNQVGTD-- 311 (460)
T ss_dssp TTHHHHHHHHHHHHH---CSSSCHHHHHHHHHHHTSCCCHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHTTCSCGG--
T ss_pred hhHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCchhhcccCCC-CHHHHHHHHHHHHHHHHHHHHHHHhCCcccc--
Confidence 965 99987776654 889999999999999999999997 78 9999999999999999999999986531110
Q ss_pred cccCcccCCCCCCCCCCCCCCCCCCCCchhcccCChhhHHHHHHHHhcCcCcchhhhhhhhhHHHHHHHHHHhCChhHHH
Q 045469 321 KSFGDEIEGSPGQMNGISQPSVGPESWPVQVLNQQPRDLSALLQKLHSGEMVHEVVTQVCKEQQRQIEMKLMLGNIPHVL 400 (938)
Q Consensus 321 ~s~~~~~~~~~~~~~~~~~~~~p~~~w~~~~l~~~p~sl~~iL~~L~s~~~~~~~v~~Ea~~P~rvIQ~~IIl~~i~~Ll 400 (938)
....+.|+ ++.+++++|++|+++ ++.|+++|||+||++||+|+++.||
T Consensus 312 ----------------~~~~~~P~----------~~~tl~~il~~L~~~------~~~ea~~p~r~iQ~~iIl~~~~~ll 359 (460)
T 3iko_C 312 ----------------ELILPLPS----------HALTVQEVLNRVASR------HPSESEHPIRVLMASVILDSLPSVI 359 (460)
T ss_dssp ----------------GCCSCCCC----------CCCCHHHHHHHHHHH------SHHHHHSTTHHHHHHHHSSCCHHHH
T ss_pred ----------------ccccCCCC----------CccCHHHHHHHHHhc------ChHhhhChHHHHHHHHHHcCHHHHH
Confidence 11223332 356899999999842 3468999999999999999999999
Q ss_pred HHHHHhhcCC---CCCcCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHHHHhCCCcchHh
Q 045469 401 QLIWSWIAPS---EDDQNVFRPHGDPQMIRFGAHLVLVLRYLLTDELKDPFRKDLMDAGDLIIHMYAMFLFSEHHEELVG 477 (938)
Q Consensus 401 ~~~~~~l~~~---~~~~~~l~~~~~p~lLRflaHLvLfLr~l~~~~~~~~~~e~~~~~~~~II~aYI~~L~~~g~~eLIp 477 (938)
+++..|+.+. .++++. ...+||+|||+|||+||++.+|+... .+ .++++||++||++|+.+|+++|||
T Consensus 360 ~~~~~~L~~~~~~~~~~~~--~~~~~~~LRf~aHl~Lflr~l~~~~~----~~---~~~~~II~~YI~~L~~~~~~eLIp 430 (460)
T 3iko_C 360 HSSVEMLLDVVKGTEASND--IIDKPYLLRIVTHLAICLDIINPGSV----EE---VDKSKLITTYISLLKLQGLYENIP 430 (460)
T ss_dssp HHHHHTCCC------------CTTSHHHHHHHHHHHHHHHHHSTTSS----CH---HHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHhhccCccccc--cccCcchHHHHHHHHHHHHHhCcccc----Ch---HHHHHHHHHHHHHHHHCCCcccHH
Confidence 9999999763 222222 24689999999999999999997311 12 578999999999999999999999
Q ss_pred hhhccCCchhhHHHHHHHhhhhcCchhhHH
Q 045469 478 VYASQLARHRCIDLFVHMMELRLNSSVHVK 507 (938)
Q Consensus 478 lYaS~Lp~~~~ie~ys~~Ls~i~d~s~~~k 507 (938)
+|||+||+++++++||+||.+|+|+++|.|
T Consensus 431 lY~S~L~~~~~~e~Ys~fL~~i~d~~~R~k 460 (460)
T 3iko_C 431 IYATFLNESDCLEACSFILSSLEDPQVRKK 460 (460)
T ss_dssp HHHTTCGGGGGC------------------
T ss_pred HHHccCCHhHHHHHHHHHHhcCCChhhccC
Confidence 999999999999999999999999988864
|
| >3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A | Back alignment and structure |
|---|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B | Back alignment and structure |
|---|
| >3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B | Back alignment and structure |
|---|
| >2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B | Back alignment and structure |
|---|
| >3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00