Citrus Sinensis ID: 045478
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 852 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C5Y0 | 868 | Phospholipase D delta OS= | yes | no | 0.970 | 0.952 | 0.584 | 0.0 | |
| P93733 | 1083 | Phospholipase D beta 1 OS | no | no | 0.951 | 0.748 | 0.568 | 0.0 | |
| Q9T053 | 858 | Phospholipase D gamma 1 O | no | no | 0.961 | 0.954 | 0.543 | 0.0 | |
| Q9T052 | 866 | Phospholipase D gamma 3 O | no | no | 0.962 | 0.946 | 0.541 | 0.0 | |
| O23078 | 927 | Phospholipase D beta 2 OS | no | no | 0.956 | 0.879 | 0.546 | 0.0 | |
| Q9T051 | 856 | Phospholipase D gamma 2 O | no | no | 0.964 | 0.960 | 0.530 | 0.0 | |
| P93400 | 808 | Phospholipase D alpha 1 O | N/A | no | 0.924 | 0.975 | 0.448 | 0.0 | |
| Q43270 | 812 | Phospholipase D alpha 1 O | N/A | no | 0.928 | 0.974 | 0.458 | 0.0 | |
| O04865 | 809 | Phospholipase D alpha 1 O | N/A | no | 0.874 | 0.920 | 0.470 | 0.0 | |
| Q43007 | 812 | Phospholipase D alpha 1 O | no | no | 0.930 | 0.976 | 0.453 | 0.0 |
| >sp|Q9C5Y0|PLDD1_ARATH Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1063 bits (2749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/872 (58%), Positives = 638/872 (73%), Gaps = 45/872 (5%)
Query: 18 ASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKT----------- 66
S++ + LHGDLDL I++A+ LPNMD+ +E +R+ C C P
Sbjct: 5 VSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFG 64
Query: 67 -RGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVK 125
+ + +ITS+PYV+V + AT+A+TRV+ N + P WDE F + +AH LEF VK
Sbjct: 65 DKNIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVK 124
Query: 126 DNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPL 185
D+D+ GA++IG +IPV I G + WFP+ G+ GK K + + M++ P QI
Sbjct: 125 DDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHS 184
Query: 186 YKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEI 245
Y+ G+ P+ +GV +TYFP+RK + LYQDAHV G LP I LD GK + HG+CWE+I
Sbjct: 185 YRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDI 244
Query: 246 CHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWD 305
C+A+ EA H+IYI+GWS+FH +KLVRE TK +P +++ GELLK+KSQEGVRVLLL+WD
Sbjct: 245 CYAISEAHHMIYIVGWSIFHKIKLVRE-TK-VPRDKDMTLGELLKYKSQEGVRVLLLVWD 302
Query: 306 DKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQ--------- 356
DKTSHD IKT GVM THDEETRKFFKHSSV CVL+PRYAS+KL +FKQQ
Sbjct: 303 DKTSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPSSSIYI 362
Query: 357 --VVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFAND 414
VVGTLFTHHQKCV+VDT A GNNRK++AFIGGLDLCDGRYDTPEHR+ DL+TVF +D
Sbjct: 363 MTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDD 422
Query: 415 FHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREF--RLKKVTHWY 472
FHNP+ P+ K PR+PWHD+HC+++GPAAYD+LINFEQRWR++T+W+EF RLK THW
Sbjct: 423 FHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQ 482
Query: 473 DDSLINLDRIG--ITP---------STGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVK 521
DD+LI + RI ++P S P E + ENWH+Q+FRSIDSGSVK
Sbjct: 483 DDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVK 542
Query: 522 GFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKN 581
GFPK +EA AQ+L CAK L VDKSI +AY++ IRSAQHFIYIENQYF+GSSY WPSY++
Sbjct: 543 GFPKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRD 602
Query: 582 AGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYK 641
AGADNLIPMELALKIVSKI A ERF+VYVVIP+WPEG+P S VQEILYWQ QTM MMY
Sbjct: 603 AGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPKSGPVQEILYWQSQTMQMMYD 662
Query: 642 IVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIY 701
++A+ L+ + + HP DYL+FYCLGKRE P D N ++ + F+RFMIY
Sbjct: 663 VIAKELK--AVQSDAHPLDYLNFYCLGKREQLPDDMPATN----GSVVSDSYNFQRFMIY 716
Query: 702 VHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRT 761
VHAKGMIVDDEYV+MGSANINQRS+ G++DTEIAMGAYQP++TWA K HPRGQVYGYR
Sbjct: 717 VHAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRM 776
Query: 762 SLWAEHLGTLEDTFREPQSLECMQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREG 821
SLWAEHLG D F EP LEC+++VN I+ ENWK F+ E++GHL++YP+Q+ +G
Sbjct: 777 SLWAEHLGKTGDEFVEPSDLECLKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDG 836
Query: 822 KVSTLPGYDTFPDVGGKILGAPT-SLPDALTT 852
KVS LP Y+TFPDVGGKI+GA + +LPD LTT
Sbjct: 837 KVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868
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Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. May be involved in phosphatidic acid accumulation in the dehydration stress response and in the transduction of hormonal and environmental signals to the microtubules cytoskeleton. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4 |
| >sp|P93733|PLDB1_ARATH Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 967 bits (2499), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/832 (56%), Positives = 608/832 (73%), Gaps = 21/832 (2%)
Query: 23 VFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYV 82
+ LHG+LD+ I AK+LPNMD+ +++ +M G R P K L+ S ITS+PYV
Sbjct: 269 LLLHGNLDIWIYHAKNLPNMDMFHKTL---GDMFG--RLPGKIEGQLT---SKITSDPYV 320
Query: 83 SVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPV 142
SV ++GA + +T V+SN ENP W +HF VPVAH + F VKD+D++G++LIG+V IPV
Sbjct: 321 SVSVAGAVIGRTYVMSNSENPVWMQHFYVPVAHHAAEVHFVVKDSDVVGSQLIGLVTIPV 380
Query: 143 EKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDYQGVPKT 202
E+I G +++ +PI S GK KP L +S+QY P+ ++ +Y GVGAGPDYQGVP T
Sbjct: 381 EQIYSGAKIEGTYPILNSNGKPCKPGANLSLSIQYTPMDKLSVYHHGVGAGPDYQGVPGT 440
Query: 203 YFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGWS 262
YFPLRK G + LYQDAHVP GMLP I LD G ++ HG+CW ++ A+ +AR LIYI GWS
Sbjct: 441 YFPLRKGGTVRLYQDAHVPEGMLPGIRLDNGMSYEHGKCWHDMFDAIRQARRLIYITGWS 500
Query: 263 VFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQ 322
V+H VKL+R+ P E + GELL+ KSQEGVRVLLLIWDD TS L KT+GVM
Sbjct: 501 VWHKVKLIRDKLGPA---SECTLGELLRSKSQEGVRVLLLIWDDPTSRSILGYKTDGVMA 557
Query: 323 THDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKI 382
THDEETR+FFKHSSV +L PR A + S KQ+ VGT++THHQK VIVD A GN RKI
Sbjct: 558 THDEETRRFFKHSSVQVLLCPRNAGKRHSWVKQREVGTIYTHHQKNVIVDADAGGNRRKI 617
Query: 383 SAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKG-PREPWHDMHCKVEGP 441
AF+GGLDLCDGRYDTP+H LF L T+ +DFHNP+ + G PREPWHD+H K++GP
Sbjct: 618 IAFVGGLDLCDGRYDTPQHPLFRTLQTIHKDDFHNPTFTGNLSGCPREPWHDLHSKIDGP 677
Query: 442 AAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYKPTRAGSE 501
AAYD+L NFE+RW ++ K +KK YDD+L+ +DRI P S PT SE
Sbjct: 678 AAYDVLTNFEERWLKAAK--PSGIKKFKTSYDDALLRIDRI---PDILGVSDTPTV--SE 730
Query: 502 KETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHF 561
+ E WH+Q+FRSIDS SVKGFPKD ++A +NLVC K++ +D SIH+AYVKAIR+AQHF
Sbjct: 731 NDPEAWHVQIFRSIDSNSVKGFPKDPKDATCKNLVCGKNVLIDMSIHTAYVKAIRAAQHF 790
Query: 562 IYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPN 621
IYIENQYFIGSSY+W ++K+ GA+NLIPME+ALKI KI ANERF+ Y+VIPMWPEG P
Sbjct: 791 IYIENQYFIGSSYNWNAHKDIGANNLIPMEIALKIAEKIRANERFAAYIVIPMWPEGVPT 850
Query: 622 SAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKRE-APPLDRSQM 680
AA Q ILYWQ +T+ MMY+ + +AL + GL + PQDYL+F+CLG RE +D S
Sbjct: 851 GAATQRILYWQHKTIQMMYETIYKALVETGLEGAFSPQDYLNFFCLGNREMVDGIDNSGT 910
Query: 681 NQQTE-NRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAY 739
+ N A ++K RRFM+YVH+KGM+VDDEYV++GSANINQRS+EG+RDTEIAMGAY
Sbjct: 911 GSPSNANTPQALSRKSRRFMVYVHSKGMVVDDEYVVIGSANINQRSMEGTRDTEIAMGAY 970
Query: 740 QPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVNRIAGENWKAFV 799
QP +TWA K S PRGQ+YGYR SLWAEH+ TL+D F +P+S+EC+++V + NWK F
Sbjct: 971 QPQHTWARKHSGPRGQIYGYRMSLWAEHMATLDDCFTQPESIECVRKVRTMGERNWKQFA 1030
Query: 800 CDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTSLPDALT 851
+ +MRGHL++YPV++ R+GKV LPG +TFPDVGG I+G+ ++ + LT
Sbjct: 1031 AEEVSDMRGHLLKYPVEVDRKGKVRPLPGSETFPDVGGNIVGSFIAIQENLT 1082
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Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine or N-acylphosphatidylethanolamine as substrates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q9T053|PLDG1_ARATH Phospholipase D gamma 1 OS=Arabidopsis thaliana GN=PLDGAMMA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/857 (54%), Positives = 605/857 (70%), Gaps = 38/857 (4%)
Query: 8 TPKSTSSGSAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTR 67
P +TSSGS + LHG+LD+ + EAK LPNMD + + G KK
Sbjct: 26 VPFATSSGSLRVE---LLHGNLDIWVKEAKHLPNMDGFHNRLGGMLSGLGR-----KKVE 77
Query: 68 GLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDN 127
G + S ITS+PYV+V +SGA + +T VISN ENP W +HF VPVAHS + F VKD+
Sbjct: 78 G--EKSSKITSDPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAEVHFVVKDS 135
Query: 128 DILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYK 187
DI+G++++G V IP E++ GN ++ FPI S GK K L +S+QY P+ ++ LY+
Sbjct: 136 DIIGSQIMGAVGIPTEQLCSGNRIEGLFPILNSSGKPCKQGAVLGLSIQYTPMERMRLYQ 195
Query: 188 DGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICH 247
GVG+G + GVP TYFPLRK G +TLYQDAHV G LP + LDGG +RHG+CWE++
Sbjct: 196 MGVGSGNECVGVPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWEDMAD 255
Query: 248 AVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDK 307
A+ +AR LIYI GWSVFHPV+LVR P E + GELLK KSQEGVRVL+L+WDD
Sbjct: 256 AIRQARRLIYITGWSVFHPVRLVRRTNDPT----EGTLGELLKVKSQEGVRVLVLVWDDP 311
Query: 308 TSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQK 367
TS L KT+GVM T DEETR+FFKHSSV +L PR S K+ VGT++THHQK
Sbjct: 312 TSRSLLGFKTQGVMNTSDEETRRFFKHSSVQVLLCPRSGGKGHSFIKKSEVGTIYTHHQK 371
Query: 368 CVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAK-G 426
VIVD A+ N RKI AF+GGLDLC+GR+DTP+H LF L T+ +DFHNP+ + A G
Sbjct: 372 TVIVDAEAAQNRRKIVAFVGGLDLCNGRFDTPKHPLFRTLKTLHKDDFHNPNFVTTADDG 431
Query: 427 PREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRI---- 482
PREPWHD+H K++GPAAYD+L NFE+RW +++K R + K+ DDSL+ +DRI
Sbjct: 432 PREPWHDLHSKIDGPAAYDVLANFEERWMKASKPRG--IGKLKSSSDDSLLRIDRIPDIV 489
Query: 483 GITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLK 542
G++ ++ + P E+WH+QVFRSIDS SVKGFPKD +EA +NL+C K++
Sbjct: 490 GLSEASSANDNDP---------ESWHVQVFRSIDSSSVKGFPKDPKEATGRNLLCGKNIL 540
Query: 543 VDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINA 602
+D SIH+AYVKAIRSAQHFIYIENQYF+GSS++W S K+ GA+NLIPME+ALKI +KI A
Sbjct: 541 IDMSIHAAYVKAIRSAQHFIYIENQYFLGSSFNWDSNKDLGANNLIPMEIALKIANKIRA 600
Query: 603 NERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYL 662
E+F+ Y+VIPMWPEG P S +Q ILYWQ +TM MMY+ + +AL + GL +++ PQD+L
Sbjct: 601 REKFAAYIVIPMWPEGAPTSNPIQRILYWQHKTMQMMYQTIYKALVEVGLDSQFEPQDFL 660
Query: 663 SFYCLGKREAPPLDRSQMNQQTENRALAAAQ--------KFRRFMIYVHAKGMIVDDEYV 714
+F+CLG RE P S N + A K RRFMIYVH+KGM+VDDE+V
Sbjct: 661 NFFCLGTREVPVGTVSVYNSPRKPPQPNANANAAQVQALKSRRFMIYVHSKGMVVDDEFV 720
Query: 715 IMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDT 774
++GSANINQRSLEG+RDTEIAMG YQPHY+WA K S P GQ++GYR SLWAEHLG LE
Sbjct: 721 LIGSANINQRSLEGTRDTEIAMGGYQPHYSWAMKGSRPHGQIFGYRMSLWAEHLGFLEQG 780
Query: 775 FREPQSLECMQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPD 834
F EP+++EC++RV +++ NW+ + + EM GHL++YPVQ+ R GKVS+LPG +TFPD
Sbjct: 781 FEEPENMECVRRVRQLSELNWRQYAAEEVTEMSGHLLKYPVQVDRTGKVSSLPGCETFPD 840
Query: 835 VGGKILGAPTSLPDALT 851
+GGKI+G+ +L + LT
Sbjct: 841 LGGKIIGSFLALQENLT 857
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Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine but prefers ethanolamine-containing lipids as substrates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q9T052|PLDG3_ARATH Phospholipase D gamma 3 OS=Arabidopsis thaliana GN=PLDGAMMA3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/862 (54%), Positives = 610/862 (70%), Gaps = 42/862 (4%)
Query: 7 VTPKSTSSGSAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPF-KK 65
+ P TSSGS + LHG+LD+ + EAK LPNMD ++ G F ++
Sbjct: 29 LVPFDTSSGSLRVE---LLHGNLDIWVKEAKHLPNMDGFHNTL------VGGMFFGLGRR 79
Query: 66 TRGLSGRHS-MITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHV 124
+ G +S ITS+PYV+V +SGA + +T VISN ENP W +HF VPVAHS + F V
Sbjct: 80 NHKVDGENSSKITSDPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAKVHFVV 139
Query: 125 KDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIP 184
KD+DI+G+++IG V+IP E++ GN ++ FPI S GK K L +S+QY P+ ++
Sbjct: 140 KDSDIIGSQIIGAVEIPTEQLCSGNRIEGLFPILNSRGKPCKQGAVLSLSIQYIPMERMR 199
Query: 185 LYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEE 244
LY+ GVG G + GVP TYFPLRK G +TLYQDAHV G LP + LDGG +RHG+CWE+
Sbjct: 200 LYQKGVGFGVECVGVPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWED 259
Query: 245 ICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIW 304
+ A+ AR LIYI GWSVFHPV+LVR P + + GELLK KSQEGVRVL+L+W
Sbjct: 260 MADAIRRARRLIYITGWSVFHPVRLVRRNNDPT----QGTLGELLKVKSQEGVRVLVLVW 315
Query: 305 DDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTH 364
DD TS L T+G+M T DEETR+FFKHSSV +L PRY S K+ V T++TH
Sbjct: 316 DDPTSRSLLGFSTKGLMNTSDEETRRFFKHSSVQVLLCPRYGGKGHSFIKKSEVETIYTH 375
Query: 365 HQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHA 424
HQK +IVD A+ N RKI AF+GGLDLC+GR+DTP+H LF L T+ +DFHNP+ + A
Sbjct: 376 HQKTMIVDAEAAQNRRKIVAFVGGLDLCNGRFDTPKHPLFRTLKTIHKDDFHNPNFVTTA 435
Query: 425 K-GPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREF-RLKKVTHWYDDSLINLDRI 482
GPREPWHD+H K++GPAAYD+L NFE+RW +++K R RL+ + DDSL+ LDRI
Sbjct: 436 DDGPREPWHDLHSKIDGPAAYDVLANFEERWMKASKPRGIGRLRTSS---DDSLLRLDRI 492
Query: 483 ----GITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCA 538
G++ ++ + ++ + E+WH+QVFRSIDS SVKGFPKD +EA +NL+C
Sbjct: 493 PDIMGLSEAS---------SANDNDPESWHVQVFRSIDSSSVKGFPKDPKEATGRNLLCG 543
Query: 539 KDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVS 598
K++ +D SIH+AYVKAIRSAQHFIYIENQYF+GSS++W S KN GA+NLIPME+ALKI +
Sbjct: 544 KNILIDMSIHAAYVKAIRSAQHFIYIENQYFLGSSFNWDSNKNLGANNLIPMEIALKIAN 603
Query: 599 KINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHP 658
KI A E+F+ Y+VIPMWPEG P S +Q ILYWQ +TM MMY+ + +AL + GL + P
Sbjct: 604 KIRAREKFAAYIVIPMWPEGAPTSNPIQRILYWQHKTMQMMYQTIYKALVEVGLDGQLEP 663
Query: 659 QDYLSFYCL-----GKREAPPLDRSQMNQQTENRALAAAQ----KFRRFMIYVHAKGMIV 709
QD+L+F+CL G RE P S N + L AAQ K RRFMIYVH+KGM+V
Sbjct: 664 QDFLNFFCLGTREVGTREVPDGTVSVYNSPRKPPQLNAAQVQALKSRRFMIYVHSKGMVV 723
Query: 710 DDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLG 769
DDE+V++GSANINQRSLEG+RDTEIAMG YQPH++WA K S PRGQ++GYR SLWAEHLG
Sbjct: 724 DDEFVLIGSANINQRSLEGTRDTEIAMGGYQPHHSWAKKGSRPRGQIFGYRMSLWAEHLG 783
Query: 770 TLEDTFREPQSLECMQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGY 829
LE F EP+++EC++RV +++ NW+ + + EM GHL++YPVQ+ R GKVS+LPGY
Sbjct: 784 FLEQEFEEPENMECVRRVRQLSELNWRQYAAEEVTEMPGHLLKYPVQVDRTGKVSSLPGY 843
Query: 830 DTFPDVGGKILGAPTSLPDALT 851
+TFPD+GGKI+G+ + + LT
Sbjct: 844 ETFPDLGGKIIGSFLVVEENLT 865
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Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine but prefers ethanolamine-containing lipids as substrates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|O23078|PLDB2_ARATH Phospholipase D beta 2 OS=Arabidopsis thaliana GN=PLDBETA2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 931 bits (2406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/838 (54%), Positives = 593/838 (70%), Gaps = 23/838 (2%)
Query: 18 ASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSM-I 76
AS + + LHG+LD+ + A +LPN+DL +++ T + G+ S I
Sbjct: 108 ASLKVLLLHGNLDIWVSCANNLPNLDLFHKTLGVVFG---------GMTNMIEGQLSKKI 158
Query: 77 TSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIG 136
TS+PYVS+ ++GA + +T VISN ENP W +HF VPVAH + F VKD+D +G++LIG
Sbjct: 159 TSDPYVSISVAGAVIGRTYVISNSENPVWQQHFYVPVAHHAAEVHFVVKDSDAVGSQLIG 218
Query: 137 VVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDY 196
+V IPVE+I G ++ + I S GK KP L +S+QY + ++ +Y GVGAGP Y
Sbjct: 219 IVTIPVEQIYSGARIEGTYSIRDSNGKPCKPGATLSLSIQYTSMNKLSVYHSGVGAGPYY 278
Query: 197 QGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLI 256
QGVP TYFPLR+ G++TLYQDAHVP GMLP I L G + HG+CW ++ HA+ +AR LI
Sbjct: 279 QGVPGTYFPLREGGSVTLYQDAHVPEGMLPGIKLGNGMCYEHGKCWHDMFHAICQARRLI 338
Query: 257 YIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIK 316
YI GWSV+H V+LVR+ P E GELL+ KSQEGVRVLLL+WDD TS + L
Sbjct: 339 YITGWSVWHNVRLVRDKEDP---SSECRLGELLRSKSQEGVRVLLLVWDDPTSQNILGYM 395
Query: 317 TEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPAS 376
T+GVM THDEETR+FFK SSV +L PR A + S KQ+ VGT++THHQK +IVD A
Sbjct: 396 TDGVMGTHDEETRRFFKDSSVQVLLCPRNAGKRHSWVKQREVGTIYTHHQKNLIVDADAG 455
Query: 377 GNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKG-PREPWHDMH 435
GN RKI AF+GGLDLCDGRYDTP+H LF L T D+HNP+ + G PREPWHD+H
Sbjct: 456 GNRRKIVAFVGGLDLCDGRYDTPQHPLFRTLQTDHNGDYHNPTFTGNVSGCPREPWHDLH 515
Query: 436 CKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYKP 495
K++GPAAYD+L NFE+RW ++ K R+ K+ YDD+L+ +DRI P P
Sbjct: 516 SKIDGPAAYDVLTNFEERWLKAAK--PHRINKLKTSYDDALLRIDRI---PDILRVLDAP 570
Query: 496 TRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAI 555
T + ++ E WH+Q+FRSIDS SVKGFPKD + A ++NLVC K++ +D SIH+AYVKAI
Sbjct: 571 TVSANDPEA--WHVQIFRSIDSNSVKGFPKDPKYATSKNLVCGKNVLIDMSIHTAYVKAI 628
Query: 556 RSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMW 615
R+AQHFIYIENQYFIGSSY W ++K+ GA+NLIPME+ALKI KI A ERF+ Y+VIPMW
Sbjct: 629 RAAQHFIYIENQYFIGSSYDWNAHKDIGANNLIPMEIALKIADKIRAKERFAAYIVIPMW 688
Query: 616 PEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPL 675
PEG P AA Q ILYWQ +TM MMY + AL + GL ++Y PQDYL+F+CLG RE
Sbjct: 689 PEGVPTGAATQRILYWQHKTMQMMYGTIYNALVEAGLEDEYSPQDYLNFFCLGNREMVNG 748
Query: 676 DRSQ--MNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTE 733
+ + EN +K RRFMIYVH+KGM+VDDEYV++GSANINQRS+EG+RDTE
Sbjct: 749 NNESGTGSASNENTPQGLCRKSRRFMIYVHSKGMVVDDEYVVIGSANINQRSMEGTRDTE 808
Query: 734 IAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVNRIAGE 793
IAMGAYQP +TWA ++S PRGQ+YGYR SLWAEH+ L+D F EP+SL C+++V +A E
Sbjct: 809 IAMGAYQPQHTWARRQSGPRGQIYGYRMSLWAEHMALLDDCFVEPESLGCVRKVRTVAEE 868
Query: 794 NWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTSLPDALT 851
NW+ F + EMRGHLM+YPV++ R+GKV LPG + FPDVGG ++G+ ++ + LT
Sbjct: 869 NWEQFRSEEVSEMRGHLMKYPVEVDRKGKVRPLPGSEEFPDVGGNVVGSFLAIQENLT 926
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine or N-acylphosphatidylethanolamine as substrates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q9T051|PLDG2_ARATH Phospholipase D gamma 2 OS=Arabidopsis thaliana GN=PLDGAMMA2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/860 (53%), Positives = 596/860 (69%), Gaps = 38/860 (4%)
Query: 7 VTPKSTSSGSAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKT 66
+ P +TSSGS + LHG+LD+ + EAK LPNM + + R +
Sbjct: 19 LVPLATSSGSLMVE---LLHGNLDIWVKEAKHLPNMICYRNKLVGGISFSELGR----RI 71
Query: 67 RGLSG-RHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVK 125
R + G + S TS+PYV+V +SGA + +T VISN ENP W +HF VPVAHS + F VK
Sbjct: 72 RKVDGEKSSKFTSDPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAEVHFVVK 131
Query: 126 DNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPL 185
DND +G+++IGVV IP +++ GN ++ FPI S GK + L +S+QY P+ ++ L
Sbjct: 132 DNDPIGSKIIGVVGIPTKQLCSGNRIEGLFPILNSSGKPCRKGAMLSLSIQYTPMERMRL 191
Query: 186 YKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEI 245
Y+ GVG+G + GVP TYFPLRK G +TLYQDAHV G LP + LDGG +RHG+CWE++
Sbjct: 192 YQKGVGSGVECVGVPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWEDM 251
Query: 246 CHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWD 305
A+ AR LIYI GWSVFHPV+LVR P E + GELLK KSQEGVRVL+L+WD
Sbjct: 252 ADAIRRARRLIYITGWSVFHPVRLVRRNNDPT----EGTLGELLKVKSQEGVRVLVLVWD 307
Query: 306 DKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHH 365
D TS T+G+M T DEETR+FFKHSSV +L PRY S K+ V T++THH
Sbjct: 308 DPTSMSFPGFSTKGLMNTSDEETRRFFKHSSVQVLLCPRYGGKGHSFIKKSEVETIYTHH 367
Query: 366 QKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPS-LPSHA 424
QK +IVD A+ N RKI AF+GGLDLC+GR+DTP+H LFG L T+ +DFHNP+ + +
Sbjct: 368 QKTMIVDAEAAQNRRKIVAFVGGLDLCNGRFDTPKHSLFGTLKTLHKDDFHNPNFVTTED 427
Query: 425 KGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRI-- 482
GPREPWHD+H K++GPAAYD+L NFE+RW S + + K +DDSL+ ++RI
Sbjct: 428 VGPREPWHDLHSKIDGPAAYDVLANFEERWMAS---KPRGIGKGRTSFDDSLLRINRIPD 484
Query: 483 --GITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKD 540
G++ ++ + P E+WH+QVFRSIDS SVKGFPKD EEA +NL+C K+
Sbjct: 485 IMGLSEASSANDNDP---------ESWHVQVFRSIDSTSVKGFPKDPEEATGRNLLCGKN 535
Query: 541 LKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKI 600
+ +D SIH+AYVKAIRSAQHFIYIENQYF+GSS++W S K+ GA+NLIPME+ALKI +KI
Sbjct: 536 ILIDMSIHAAYVKAIRSAQHFIYIENQYFLGSSFNWDSNKDLGANNLIPMEIALKIANKI 595
Query: 601 NANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQD 660
A E F+ Y+VIPMWPEG P S +Q ILYWQ +TM MMY+ + +AL + GL + PQD
Sbjct: 596 RARENFAAYIVIPMWPEGAPTSKPIQRILYWQHKTMQMMYQTIYKALLEVGLDGQLEPQD 655
Query: 661 YLSFYCLGKREAPPLDRSQMNQQT---------ENRALAAAQKFRRFMIYVHAKGMIVDD 711
+L+F+CLG RE + N A A K RRFMIYVH+KGM+VDD
Sbjct: 656 FLNFFCLGNREVGTREVPDGTVNVYNCPRKPPQPNAAQVQALKSRRFMIYVHSKGMVVDD 715
Query: 712 EYVIMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTL 771
E+V++GSANINQRSLEG+RDTEIAMG YQPH++WA K S PRGQ++GYR SLWAEHLG L
Sbjct: 716 EFVLIGSANINQRSLEGTRDTEIAMGGYQPHHSWAKKGSRPRGQIFGYRMSLWAEHLGFL 775
Query: 772 EDTFREPQSLECMQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDT 831
E F EP+++EC++RV +++ NW + + EM GHL++YPVQ+ + GKVS+LPG +T
Sbjct: 776 EQEFEEPENMECVRRVRQLSELNWGQYAAEEVTEMSGHLLKYPVQVDKTGKVSSLPGCET 835
Query: 832 FPDVGGKILGAPTSLPDALT 851
FPD+GGKI+G+ +L + LT
Sbjct: 836 FPDLGGKIIGSFLTLQENLT 855
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine but prefers ethanolamine-containing lipids as substrates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|P93400|PLDA1_TOBAC Phospholipase D alpha 1 OS=Nicotiana tabacum GN=PLD1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/847 (44%), Positives = 528/847 (62%), Gaps = 59/847 (6%)
Query: 23 VFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYV 82
+ LHG L ++I E +L GH K+ + T Y
Sbjct: 4 ILLHGTLHVTIYEVDNLQK------------EGGGHFFSKIKEHVEETIGFGKGTPAIYA 51
Query: 83 SVCLSGATVAQTRVISN-CENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIP 141
+V L A V +TR I N NP W E F + AH N+ F VKD++ +GA LIG +P
Sbjct: 52 TVDLEKARVGRTRKIKNEPNNPRWYESFHIYCAHMASNVIFTVKDDNPIGATLIGRAYVP 111
Query: 142 VEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDYQGVPK 201
VE++L G E+D W I + ++HV +Q+ + + P ++ G+ + Y GVP
Sbjct: 112 VEELLEGEEIDKWVEILDREMNPIAEGSKIHVKLQFFDVSRDPNWERGIRSS-KYPGVPY 170
Query: 202 TYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGW 261
T+F R ++LYQDAHVP +P+I L GGK + +CWE+I A++ A+HLIYI GW
Sbjct: 171 TFFAQRTGCRVSLYQDAHVPDNFIPKIPLSGGKYYEPHRCWEDIFDAIINAKHLIYITGW 230
Query: 262 SVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVM 321
SV+ + LVR+ + P G+++ GELLK K+ EGV+VL+L+WDD+TS +K +G+M
Sbjct: 231 SVYTEITLVRDSRRQKPG-GDITLGELLKKKASEGVKVLMLVWDDRTSVG--LLKKDGLM 287
Query: 322 QTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDT---PASGN 378
THD+ET +FF+ + VNCVL PR + SI + +GT+FTHHQK V+VD+
Sbjct: 288 ATHDQETEQFFQGTEVNCVLCPRNPDDGGSIVQSLQIGTMFTHHQKIVVVDSELPSGESE 347
Query: 379 NRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHA---KGPREPWHDMH 435
R+I +F+GG+DLCDGRYDTP H LF L+T +DFH P+ P A GPREPWHD+H
Sbjct: 348 KRRILSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPDGAITKGGPREPWHDIH 407
Query: 436 CKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLIN---LDRIGITPSTGPHS 492
++EGP A+D+L NFEQRWR+ D L+N LD I I PS H
Sbjct: 408 SRLEGPIAWDVLFNFEQRWRKQGG-------------KDVLVNFRELDDIIIPPSPVMHL 454
Query: 493 YKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYV 552
++E W++Q+FRSID G+ GFP+ E+A LV D +D+SI AY+
Sbjct: 455 ---------DDSETWNVQLFRSIDEGAAFGFPETPEDAAKAGLVSGXDNIIDRSIQDAYI 505
Query: 553 KAIRSAQHFIYIENQYFIGSSYHWPS----YKNAGADNLIPMELALKIVSKINANERFSV 608
AIR A++FIYIENQYF+GSSY W S ++ GA ++IP ELALKIVSKI A ERF+V
Sbjct: 506 HAIRRAKNFIYIENQYFLGSSYDWQSDDIKVEDIGALHVIPKELALKIVSKIEAGERFTV 565
Query: 609 YVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLG 668
YVV+PMWPEG P SA+VQ IL WQ +TM MMYK + QAL G+ P++YL+F+C+G
Sbjct: 566 YVVVPMWPEGIPESASVQAILDWQRRTMEMMYKHIVQALNAKGIEED--PRNYLTFFCIG 623
Query: 669 KREAPPLDRSQMNQQTE-NRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLE 727
RE + ++ E + AQ+ RRFMIYVH+K MIVDDEY+I+GSANINQRS++
Sbjct: 624 NREVKKSGAYEPSETPEPDSDYIRAQEARRFMIYVHSKMMIVDDEYIIVGSANINQRSMD 683
Query: 728 GSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRV 787
G+RD+EIAMGAYQPH+ A + RGQ++G+R +LW EHLG L++TF P+S EC+ +V
Sbjct: 684 GARDSEIAMGAYQPHHL--ATREPARGQIHGFRMALWYEHLGMLDETFLHPESEECVSKV 741
Query: 788 NRIAGENWKAFVCDA-HKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTS- 845
NR+A + W + ++ +++ GHL++YP+ ++ EG V+ LPG + FPD ++LG +
Sbjct: 742 NRMADKYWDLYSSESLERDLPGHLLRYPIGVASEGDVTELPGAEHFPDTKARVLGTKSDY 801
Query: 846 LPDALTT 852
LP LTT
Sbjct: 802 LPPILTT 808
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes. Nicotiana tabacum (taxid: 4097) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q43270|PLDA1_MAIZE Phospholipase D alpha 1 OS=Zea mays GN=PLD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/848 (45%), Positives = 532/848 (62%), Gaps = 57/848 (6%)
Query: 23 VFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMI--TSNP 80
+ LHG L +I EA+SL N T G +F K G+ + +
Sbjct: 4 ILLHGTLHATIFEAESLSNPHRAT---------GGAPKFIRKLVEGIEDTVGVGKGATKI 54
Query: 81 YVSVCLSGATVAQTRVISNCE-NPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQ 139
Y +V L A V +TR+ISN NP W E F + AH ++ F VK ++ +GA LIG
Sbjct: 55 YATVDLEKARVGRTRMISNEPVNPRWYESFHIYCAHMAADVIFTVKIDNSIGASLIGRAY 114
Query: 140 IPVEKILCGNEVDDWFPIAGSYGKNLKPF--PQLHVSMQYKPIGQIPLYKDGVGAGPDYQ 197
+ V+ +L G E+D W I+ +N +P ++HV +QY +G+ + GV + Y
Sbjct: 115 LAVQDLLGGEEIDKWLEISD---ENREPVGDSKIHVKLQYFDVGKDRNWARGVRS-TKYP 170
Query: 198 GVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIY 257
GVP T+F R+ +TLYQDAHVP +P I L GK + +CWE+I A+ +A+HLIY
Sbjct: 171 GVPYTFFSQRQGCKVTLYQDAHVPDNFVPRIQLADGKNYEPHRCWEDIFDAISKAQHLIY 230
Query: 258 IIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKT 317
I GWSV+ + LVR+ +P P G+++ GELLK K+ EGVRVL+L+WDD+TS +K
Sbjct: 231 ITGWSVYTEITLVRDTNRPKPG-GDVTLGELLKRKASEGVRVLMLVWDDRTSVG--LLKK 287
Query: 318 EGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVD--TPA 375
+G+M THDEET +F + VNCVL PR + S + + T+FTHHQK V+VD P
Sbjct: 288 DGLMATHDEETANYFHGTDVNCVLCPRNPDDSGSFVQDLQISTMFTHHQKIVVVDHEMPN 347
Query: 376 SGNN-RKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHA---KGPREPW 431
G+ R+I +FIGG+DLCDGRYDT H LF L+TV +DFH P+ + GPREPW
Sbjct: 348 QGSQQRRIVSFIGGIDLCDGRYDTQYHSLFRTLDTVHHDDFHQPNFEGGSIKKGGPREPW 407
Query: 432 HDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPH 491
HD+H ++EGP A+D+L NFEQRWR+ ++ ++ L +L I I PS
Sbjct: 408 HDIHSRLEGPIAWDVLYNFEQRWRKQGG-KDLLVR---------LRDLPDIIIPPS---- 453
Query: 492 SYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAY 551
P ++ET W++Q+FRSID G+ GFP+ EEA LV KD +D+SI AY
Sbjct: 454 ---PVMFPEDRET--WNVQLFRSIDGGAAFGFPETPEEAARAGLVSGKDQIIDRSIQDAY 508
Query: 552 VKAIRSAQHFIYIENQYFIGSSYHWPSY----KNAGADNLIPMELALKIVSKINANERFS 607
V AIR A++FIYIENQYF+GSSY W + GA +LIP EL+LKIVSKI A ERF+
Sbjct: 509 VNAIRRAKNFIYIENQYFLGSSYGWKPEGIKPEEIGALHLIPKELSLKIVSKIEAGERFT 568
Query: 608 VYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCL 667
VYVV+PMWPEG P SA+VQ IL WQ +TM MMY +AQAL+ NG+ + +P+DYL+F+CL
Sbjct: 569 VYVVVPMWPEGVPESASVQAILDWQRRTMEMMYTDIAQALEANGI--EANPKDYLTFFCL 626
Query: 668 GKREAPP-LDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSL 726
G RE + + AQ+ RRFMIYVH K MIVDDEY+I+GSANINQRS+
Sbjct: 627 GNREVKQEGEYEPEEHPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSM 686
Query: 727 EGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQR 786
+G+RD+EIAMGAYQP++ A + RGQ++G+R SLW EHLG LED F+ P+S+EC+Q+
Sbjct: 687 DGARDSEIAMGAYQPYHL--ATRQPARGQIHGFRMSLWYEHLGMLEDVFQRPESVECVQK 744
Query: 787 VNRIAGENWKAFVC-DAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTS 845
VN +A + W + D +++ GHL+ YP+ ++ +G V+ LPG + FPD ++LG +
Sbjct: 745 VNEVAEKYWDLYSSDDLEQDLPGHLLSYPIGVTADGSVTELPGMENFPDTRARVLGNKSD 804
Query: 846 -LPDALTT 852
LP LTT
Sbjct: 805 YLPPILTT 812
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes. Zea mays (taxid: 4577) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|O04865|PLDA1_VIGUN Phospholipase D alpha 1 OS=Vigna unguiculata GN=PLD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/787 (47%), Positives = 510/787 (64%), Gaps = 42/787 (5%)
Query: 81 YVSVCLSGATVAQTRVISN-CENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQ 139
Y ++ L A V +TR+I N NP W+E F + H N+ F VKD++ +GA LIG
Sbjct: 50 YATIDLEKARVGRTRIIENETTNPKWNESFHIYCGHLASNIIFTVKDDNPIGATLIGRAY 109
Query: 140 IPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDYQGV 199
+PV ++L G+E+D W I + ++ ++HV +QY + + + G+ + P Y GV
Sbjct: 110 VPVSEVLDGHEIDKWVEILDTEKNPIEGGSKIHVRLQYFDVLKDRNWARGIRS-PKYPGV 168
Query: 200 PKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYII 259
P T+F R+ + LYQDAHVP +P+I L GGK + +CWE+I A+ A+HLIYI
Sbjct: 169 PYTFFSQRQGCKVFLYQDAHVPDNFVPKIPLAGGKNYEAHRCWEDIFDAITNAKHLIYIT 228
Query: 260 GWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEG 319
GWSV+ + L+R+ +P + G+ + GELLK K+ EGVRVL+L+WDD+TS +K +G
Sbjct: 229 GWSVYTEISLIRDSRRP-KAGGDQTIGELLKKKASEGVRVLMLVWDDRTSVG--LLKKDG 285
Query: 320 VMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASG-- 377
+M THDEET +FF+ + V+CVL PR + SI + + T+FTHHQK V+VD+ G
Sbjct: 286 LMATHDEETEQFFRDTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSALPGGG 345
Query: 378 --NNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHA---KGPREPWH 432
+ R+I +F+GGLDLCDGRYDT H LF L+T +DFH P+ P A GPREPWH
Sbjct: 346 GSDKRRIVSFVGGLDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWH 405
Query: 433 DMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHS 492
D+H +VEGP A+D+L NFEQRWR+ K + L L+ + I PS
Sbjct: 406 DIHSRVEGPIAWDVLFNFEQRWRKQGG------KDILA----PLRELEDVIIPPS----- 450
Query: 493 YKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYV 552
P + ET W++Q+FRSID G+ GFP E+A LV KD +D+SI AY+
Sbjct: 451 --PVTFPDDHET--WNVQLFRSIDGGAAFGFPDTPEDAAKAGLVSGKDNIIDRSIQDAYI 506
Query: 553 KAIRSAQHFIYIENQYFIGSSYHWPS----YKNAGADNLIPMELALKIVSKINANERFSV 608
AIR A++FIYIENQYF+GSS+ W + + GA +LIP EL+LKIVSKI A ERF+V
Sbjct: 507 HAIRRAKNFIYIENQYFLGSSFSWNNDDIKREEIGALHLIPKELSLKIVSKIEAGERFAV 566
Query: 609 YVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLG 668
YVV+PMWPEG P S++VQ IL WQ +T+ MMYK V QAL+ G + P++YL+F+CLG
Sbjct: 567 YVVVPMWPEGIPESSSVQAILDWQKRTIEMMYKDVVQALRAKG--SDEDPRNYLTFFCLG 624
Query: 669 KREAPPLDRSQMNQQTE-NRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLE 727
RE + +Q E + AQ+ RRFMIYVH K MIVDDEY+I+GSANINQRS++
Sbjct: 625 NREVKKSGEYEPAEQPEPDSDYQRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMD 684
Query: 728 GSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRV 787
G+RD+EIAMG YQP++ A RGQVYG+R SLW EHLG L DTF+ P+S EC+ +V
Sbjct: 685 GARDSEIAMGGYQPYHL--ANTQPARGQVYGFRMSLWYEHLGMLHDTFQRPESEECINKV 742
Query: 788 NRIAGENWKAFVCDA-HKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTS- 845
N+IA + W + ++ +++ GHL++YP+ ++ EG+V+ LPG++ FPD +ILGA
Sbjct: 743 NQIADKYWDLYSSESLERDLPGHLLRYPIGVASEGEVTELPGFEFFPDTKARILGAKADY 802
Query: 846 LPDALTT 852
LP LTT
Sbjct: 803 LPPILTT 809
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes. Vigna unguiculata (taxid: 3917) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q43007|PLDA1_ORYSJ Phospholipase D alpha 1 OS=Oryza sativa subsp. japonica GN=PLD1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/846 (45%), Positives = 532/846 (62%), Gaps = 53/846 (6%)
Query: 23 VFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYV 82
+ LHG L +I EA SL N + S K + T G+ + + Y
Sbjct: 4 MLLHGTLHATIFEAASLSNPHRASGSAPKFIRKFVEG---IEDTVGVGKGATKV----YS 56
Query: 83 SVCLSGATVAQTRVISNCE-NPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIP 141
++ L A V +TR+I+N NP W E F + AH N+ F VK ++ +GA IG +P
Sbjct: 57 TIDLEKARVGRTRMITNEPINPRWYESFHIYCAHMASNVIFTVKIDNPIGATNIGRAYLP 116
Query: 142 VEKILCGNEVDDWFPIAGSYGKNLKPF--PQLHVSMQYKPIGQIPLYKDGVGAGPDYQGV 199
V+++L G E+D W I + N +P ++HV +QY + + + GV + Y GV
Sbjct: 117 VQELLNGEEIDRWLDICDN---NREPVGESKIHVKLQYFDVSKDRNWARGVRS-TKYPGV 172
Query: 200 PKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYII 259
P T+F R+ +TLYQDAHVP +P+I L GK + +CWE+I A+ A+HLIYI
Sbjct: 173 PYTFFSQRQGCKVTLYQDAHVPDNFIPKIPLADGKNYEPHRCWEDIFDAISNAQHLIYIT 232
Query: 260 GWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEG 319
GWSV+ + LVR+ +P P G+++ GELLK K+ EGVRVL+L+WDD+TS +K +G
Sbjct: 233 GWSVYTEITLVRDSNRPKPG-GDVTLGELLKKKASEGVRVLMLVWDDRTSVG--LLKRDG 289
Query: 320 VMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVD--TPASG 377
+M THDEET +F S VNCVL PR + SI + + T+FTHHQK V+VD P G
Sbjct: 290 LMATHDEETENYFHGSDVNCVLCPRNPDDSGSIVQDLSISTMFTHHQKIVVVDHELPNQG 349
Query: 378 NN-RKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHA---KGPREPWHD 433
+ R+I +F+GGLDLCDGRYDT H LF L++ +DFH P+ + + GPREPWHD
Sbjct: 350 SQQRRIVSFVGGLDLCDGRYDTQYHSLFRTLDSTHHDDFHQPNFATASIKKGGPREPWHD 409
Query: 434 MHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSY 493
+H ++EGP A+D+L NFEQRWR+ ++ L+ L +L I PS
Sbjct: 410 IHSRLEGPIAWDVLYNFEQRWRKQGG-KDLLLQ---------LRDLSDTIIPPS------ 453
Query: 494 KPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVK 553
P ++ET W++Q+FRSID G+ GFP EEA LV KD +D+SI AY+
Sbjct: 454 -PVMFPEDRET--WNVQLFRSIDGGAAFGFPDTPEEAAKAGLVSGKDQIIDRSIQDAYIH 510
Query: 554 AIRSAQHFIYIENQYFIGSSYHWPSY----KNAGADNLIPMELALKIVSKINANERFSVY 609
AIR A++FIYIENQYF+GSSY W ++ GA +LIP ELALK+VSKI A ERF+VY
Sbjct: 511 AIRRAKNFIYIENQYFLGSSYAWKPEGIKPEDIGALHLIPKELALKVVSKIEAGERFTVY 570
Query: 610 VVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGK 669
VV+PMWPEG P S +VQ IL WQ +TM MMY + +ALQ G+ + +P+DYL+F+CLG
Sbjct: 571 VVVPMWPEGVPESGSVQAILDWQRRTMEMMYTDITEALQAKGI--EANPKDYLTFFCLGN 628
Query: 670 REAPPLDRSQMNQQTE-NRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEG 728
RE Q +Q E + + AQ+ RRFMIYVH K MIVDDEY+I+GSANINQRS++G
Sbjct: 629 REVKQAGEYQPEEQPEADTDYSRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDG 688
Query: 729 SRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVN 788
+RD+EIAMG YQP++ A + RGQ++G+R +LW EHLG L+D F+ P+SLEC+Q+VN
Sbjct: 689 ARDSEIAMGGYQPYHL--ATRQPARGQIHGFRMALWYEHLGMLDDVFQRPESLECVQKVN 746
Query: 789 RIAGENWKAFVC-DAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTS-L 846
RIA + W + D +++ GHL+ YP+ ++ +G V+ LPG + FPD ++LGA + +
Sbjct: 747 RIAEKYWDMYSSDDLQQDLPGHLLSYPIGVASDGVVTELPGMEYFPDTRARVLGAKSDYM 806
Query: 847 PDALTT 852
P LT+
Sbjct: 807 PPILTS 812
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 852 | ||||||
| 255579661 | 856 | phospholipase d beta, putative [Ricinus | 0.989 | 0.984 | 0.769 | 0.0 | |
| 359486287 | 856 | PREDICTED: phospholipase D delta-like [V | 1.0 | 0.995 | 0.735 | 0.0 | |
| 224073262 | 853 | predicted protein [Populus trichocarpa] | 0.997 | 0.996 | 0.734 | 0.0 | |
| 297739589 | 842 | unnamed protein product [Vitis vinifera] | 0.982 | 0.994 | 0.724 | 0.0 | |
| 356511029 | 857 | PREDICTED: phospholipase D delta-like [G | 0.998 | 0.992 | 0.699 | 0.0 | |
| 357519333 | 842 | Phospholipase D2 [Medicago truncatula] g | 0.971 | 0.983 | 0.712 | 0.0 | |
| 356528406 | 857 | PREDICTED: phospholipase D delta-like [G | 0.998 | 0.992 | 0.689 | 0.0 | |
| 225459766 | 840 | PREDICTED: phospholipase D delta-like [V | 0.975 | 0.989 | 0.655 | 0.0 | |
| 218199398 | 838 | hypothetical protein OsI_25571 [Oryza sa | 0.975 | 0.991 | 0.657 | 0.0 | |
| 115471451 | 838 | Os07g0260400 [Oryza sativa Japonica Grou | 0.975 | 0.991 | 0.655 | 0.0 |
| >gi|255579661|ref|XP_002530670.1| phospholipase d beta, putative [Ricinus communis] gi|223529763|gb|EEF31701.1| phospholipase d beta, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1394 bits (3609), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 652/847 (76%), Positives = 745/847 (87%), Gaps = 4/847 (0%)
Query: 10 KSTSSGSAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPF-KKTRG 68
KS S+G AAS+EP LHG+LD+ I+EAKSLPNMDL E MR+C + G C P K+
Sbjct: 10 KSQSNGVAASNEPTTLHGELDVWIIEAKSLPNMDLPAEHMRRCFTVFGSCTNPCGKRHIK 69
Query: 69 LSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDND 128
SGR+ MITS+PYVSVCL+GATVAQTRVI+NCENP WDEHFCVPVAH VV +EFHVKDND
Sbjct: 70 HSGRNKMITSDPYVSVCLAGATVAQTRVITNCENPLWDEHFCVPVAHPVVKVEFHVKDND 129
Query: 129 ILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKD 188
+LGAELIGVV I VEKI+ GN V+DWFPI G +G LKP+P+LH+S+Q+K +G+ LYKD
Sbjct: 130 VLGAELIGVVDIAVEKIISGNIVNDWFPIIGHFGNCLKPYPELHISIQFKSVGENSLYKD 189
Query: 189 GVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHA 248
GVGAGPDY GVP T+FPLRK GNLT YQDAHVP MLPEI LDGG F+H +CWE++CHA
Sbjct: 190 GVGAGPDYAGVPNTHFPLRKGGNLTFYQDAHVPDAMLPEILLDGGNVFQHSRCWEDMCHA 249
Query: 249 VLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKT 308
+LEA HLIYIIGWS+FHPVKLVREPTKPLPS GEL+ GELLK+KSQEGVRV++LIWDDKT
Sbjct: 250 ILEAHHLIYIIGWSIFHPVKLVREPTKPLPSGGELTLGELLKYKSQEGVRVVMLIWDDKT 309
Query: 309 SHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKC 368
SHD ++KTEGVMQTHDE+TRKFFKHSSV+CVLAPRYASNKLSIFKQQVVGTLFTHHQKC
Sbjct: 310 SHDKFYLKTEGVMQTHDEKTRKFFKHSSVHCVLAPRYASNKLSIFKQQVVGTLFTHHQKC 369
Query: 369 VIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPR 428
V++DT ASGNNRKI+AFIGGLDLCDGRYDTPEHRLF DL+TVF NDFHNPS S+AK PR
Sbjct: 370 VLLDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFTDLDTVFKNDFHNPSFSSNAKSPR 429
Query: 429 EPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIG--ITP 486
+PWHD+HCK+EGPAAYD+L NFEQRWR++TKWR+FRLKKVTHW DDSLI LDRI +TP
Sbjct: 430 QPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWRDFRLKKVTHWNDDSLIRLDRISWILTP 489
Query: 487 STGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKS 546
S G + + R EK+ ENWH+Q+FRSIDSGSVKGFPK +EEAVAQNLVC K+LKVDKS
Sbjct: 490 SPGVNGDQVVRVTDEKDPENWHVQIFRSIDSGSVKGFPKVIEEAVAQNLVCGKNLKVDKS 549
Query: 547 IHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERF 606
IH+AY+KAIRSAQHFIYIENQYF+GSSY+WPSYKNAGADNLIPME+ALKI SKINANE F
Sbjct: 550 IHTAYIKAIRSAQHFIYIENQYFLGSSYYWPSYKNAGADNLIPMEIALKIASKINANEHF 609
Query: 607 SVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYC 666
SVY+VIPMWPEG P S++VQEIL+WQGQTM+MMYKI+ +AL++ GLS+ YHPQDYL+FYC
Sbjct: 610 SVYIVIPMWPEGVPTSSSVQEILFWQGQTMAMMYKIIGKALEEAGLSDMYHPQDYLNFYC 669
Query: 667 LGKREAP-PLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRS 725
LGKREA PL+ S MNQQTENR+LAAAQK RRFMIYVH+KGMIVDDEYVI+GSANINQRS
Sbjct: 670 LGKREASCPLNPSHMNQQTENRSLAAAQKNRRFMIYVHSKGMIVDDEYVIIGSANINQRS 729
Query: 726 LEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQ 785
L+GSRDTEIAMG+YQP YTW K SHPRGQVYGYR SLWAEHLG LE FREP+SL CM+
Sbjct: 730 LDGSRDTEIAMGSYQPTYTWKEKNSHPRGQVYGYRMSLWAEHLGVLEGEFREPESLTCMK 789
Query: 786 RVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTS 845
RVN+ A NWKA+V + +KEMRGHLMQYPV +SR+GKVS LPG++TFPDVGGK+LGAPT+
Sbjct: 790 RVNKTARRNWKAYVAEENKEMRGHLMQYPVHVSRDGKVSALPGHETFPDVGGKVLGAPTT 849
Query: 846 LPDALTT 852
LPDALTT
Sbjct: 850 LPDALTT 856
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486287|ref|XP_002266693.2| PREDICTED: phospholipase D delta-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1355 bits (3506), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/856 (73%), Positives = 734/856 (85%), Gaps = 4/856 (0%)
Query: 1 MGSEGNVTPKSTSSGSAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCR 60
M + V ++ + S E VFLHG+LDL ILEAKSLPNMDL TE +R+C NM G C
Sbjct: 1 MAGDSTVHGETLVNVVEVSGEAVFLHGELDLWILEAKSLPNMDLATERVRRCFNMFGSCT 60
Query: 61 FPFK-KTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVN 119
PFK + + S HS+ITS+PYVSVCL+GAT+AQTRVI N ENP W EHFCVPVAH V+
Sbjct: 61 SPFKIRHKHSSKHHSIITSDPYVSVCLAGATIAQTRVIPNSENPSWGEHFCVPVAHPVMK 120
Query: 120 LEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179
+EFHVKDNDILGA+LIGVV I VEK++ GN V WFPI GS G LKP+P+LHVS+Q++P
Sbjct: 121 VEFHVKDNDILGAQLIGVVGISVEKLISGNAVSGWFPIVGSQGNPLKPYPELHVSIQFRP 180
Query: 180 IGQIPLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHG 239
+G+ PLYKDGVGAG Y GVP TYFPL K G++TLYQDAHVP GMLPEI LDGGK F+ G
Sbjct: 181 VGENPLYKDGVGAGSGYLGVPNTYFPLHKGGSITLYQDAHVPKGMLPEILLDGGKIFQQG 240
Query: 240 QCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRV 299
QCWEEICHA+LEA HLIYIIGWS+FHPVKL+REPTKP+P+ GELS GELLK+KS+EGVRV
Sbjct: 241 QCWEEICHAMLEAHHLIYIIGWSIFHPVKLLREPTKPVPAGGELSLGELLKYKSEEGVRV 300
Query: 300 LLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVG 359
L+LIWDDKTSHD L KTEGVMQTHDEETRKFFKHS V+CVL+PRYASNKLSIFKQQVVG
Sbjct: 301 LMLIWDDKTSHDRLLFKTEGVMQTHDEETRKFFKHSGVHCVLSPRYASNKLSIFKQQVVG 360
Query: 360 TLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPS 419
TLFTHHQKCV++DT A GNNRKI+AFIGGLDLCDGRYDTPEHRLF DL+TVF+NDFHNP+
Sbjct: 361 TLFTHHQKCVLLDTQAPGNNRKITAFIGGLDLCDGRYDTPEHRLFSDLDTVFSNDFHNPT 420
Query: 420 LPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINL 479
PS A+GPR+PWHD+HCKVEGPAAYDI+ NFEQRWR++ KWR+FRLKKVTHW++D+LI L
Sbjct: 421 FPSRARGPRQPWHDLHCKVEGPAAYDIMTNFEQRWRKAAKWRDFRLKKVTHWHEDALIRL 480
Query: 480 DRIG--ITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVC 537
DRI ITPS+GP R +E++ E WH+QVFRSIDSGSV+GFPK V++A AQNLVC
Sbjct: 481 DRISWIITPSSGPTGDHAVRVTTEEDPETWHVQVFRSIDSGSVRGFPKLVQDAEAQNLVC 540
Query: 538 AKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIV 597
K+LK+D+SIH+AYVKAIRSAQHFIYIENQYF+GS+YHWPSYKNAGADNLIPMELALKI
Sbjct: 541 GKNLKIDRSIHAAYVKAIRSAQHFIYIENQYFLGSAYHWPSYKNAGADNLIPMELALKIS 600
Query: 598 SKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYH 657
SKI+ANE F VY+V+PMWPEG P SA+VQEIL+WQGQTMSMMY+I+ QA+ GLS+ +H
Sbjct: 601 SKISANEHFRVYIVVPMWPEGVPTSASVQEILFWQGQTMSMMYQIIGQAIHKAGLSDTHH 660
Query: 658 PQDYLSFYCLGKREAPPLDRS-QMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIM 716
PQDYL+FYCLGKREA + S Q + +ENRAL AQKFRRFMIYVHAKGMIVDDEYV++
Sbjct: 661 PQDYLNFYCLGKREASSTESSAQTSNSSENRALGLAQKFRRFMIYVHAKGMIVDDEYVLI 720
Query: 717 GSANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFR 776
GSANINQRSL+GSRDTEIAMGAYQP YTW+ KK+HP GQVYGYR SLWAEHLGTLED+F
Sbjct: 721 GSANINQRSLDGSRDTEIAMGAYQPSYTWSGKKTHPHGQVYGYRMSLWAEHLGTLEDSFC 780
Query: 777 EPQSLECMQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVG 836
+P+SLEC+++VN IA NW+ + D +KEM GHLMQYP+Q+S+ G VSTLPG++ FPDVG
Sbjct: 781 QPESLECIRQVNSIAKNNWQIYAADENKEMTGHLMQYPIQVSKNGNVSTLPGHECFPDVG 840
Query: 837 GKILGAPTSLPDALTT 852
GK+LG+PT+LPDALTT
Sbjct: 841 GKVLGSPTNLPDALTT 856
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224073262|ref|XP_002304050.1| predicted protein [Populus trichocarpa] gi|222841482|gb|EEE79029.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1348 bits (3490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 628/855 (73%), Positives = 731/855 (85%), Gaps = 5/855 (0%)
Query: 1 MGSEGNVTPKSTSSGSAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCG-HC 59
M +E NV + S+ +S E VFLHG+LD+ ILEAKSLPNMDL +E+MRKC MCG +
Sbjct: 1 MSTETNVPRTAQSTAIQSSKESVFLHGELDIWILEAKSLPNMDLASENMRKCFTMCGSYS 60
Query: 60 RFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVN 119
K SG+HS+ITS+PYVSVCL+GATVAQTRVI+NCENP WDEHFCVPVAH VV
Sbjct: 61 PLCGHKPMTHSGKHSIITSDPYVSVCLAGATVAQTRVIANCENPLWDEHFCVPVAHPVVK 120
Query: 120 LEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179
+EFHVKDND LGA+LIGVV+IP EKI+ GN ++DWFPI + G LKP+P+LH S+Q+KP
Sbjct: 121 VEFHVKDNDFLGAQLIGVVEIPAEKIISGNTINDWFPIICTSGTCLKPYPELHFSIQFKP 180
Query: 180 IGQIPLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHG 239
+ PLYKDGVG GP+Y+GVP TYFPLRK G++TLYQDAHVP +LP+I LD GK F+H
Sbjct: 181 VEDNPLYKDGVGDGPEYKGVPNTYFPLRKGGSVTLYQDAHVPDAVLPKITLDDGKVFQHS 240
Query: 240 QCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRV 299
CWE+ICHA+LEA +LIYI+GWSV+H VKLVREPTKPLP+ GEL+ GELLK+KS+EGVRV
Sbjct: 241 SCWEDICHAILEAHNLIYIVGWSVYHRVKLVREPTKPLPAGGELTLGELLKYKSEEGVRV 300
Query: 300 LLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVG 359
++L+WDDKTSHD +KT+GVMQTHDEET+KFFKHSSV+CVLAPRY SNKLS+FKQQVVG
Sbjct: 301 VMLLWDDKTSHDTFCLKTDGVMQTHDEETKKFFKHSSVHCVLAPRYGSNKLSVFKQQVVG 360
Query: 360 TLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPS 419
TLF+HHQKCVI+DT +SGNNRKI++FIGGLDLCDGRYDTPEHRLF DL+TVF NDFHNPS
Sbjct: 361 TLFSHHQKCVILDTQSSGNNRKITSFIGGLDLCDGRYDTPEHRLFRDLHTVFENDFHNPS 420
Query: 420 LPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINL 479
PS+ K PR+PWHD+HCK+EGPAAYDIL NFEQRW+++TKWR R+KKVT W+DD+LI L
Sbjct: 421 FPSNTKSPRQPWHDLHCKIEGPAAYDILTNFEQRWKKATKWR--RIKKVTRWHDDALIKL 478
Query: 480 DRIG--ITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVC 537
+RI +TPS+ P K E + ENWH+QVFRSIDSGSVKGFPK +EAV QNLVC
Sbjct: 479 ERISWILTPSSSPDGDKIVHVTDEGDPENWHVQVFRSIDSGSVKGFPKSTQEAVDQNLVC 538
Query: 538 AKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIV 597
K+LKVDKSIH+AYVKAIRSAQHFIYIENQYF+GSSY+WPSYKNAGADNL+PMELALKI
Sbjct: 539 GKNLKVDKSIHTAYVKAIRSAQHFIYIENQYFLGSSYYWPSYKNAGADNLVPMELALKIA 598
Query: 598 SKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYH 657
SKI ANERFSVY+VIPMWPEG P SA+VQEILYWQGQTM+MMYKI+A+ L+ GLS +YH
Sbjct: 599 SKIRANERFSVYIVIPMWPEGVPTSASVQEILYWQGQTMAMMYKIIAKELEKAGLSYQYH 658
Query: 658 PQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMG 717
PQ YL+FYCLGKRE P D S++NQQTENR+LAAAQKFRRFMIYVHAKGM+VDDEYVIMG
Sbjct: 659 PQYYLNFYCLGKRENSPHDSSEINQQTENRSLAAAQKFRRFMIYVHAKGMVVDDEYVIMG 718
Query: 718 SANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFRE 777
SANINQRSL+GSRDTEIAMGAYQP YTWA K SHP GQVYGYR SLWAEHLG LE F E
Sbjct: 719 SANINQRSLDGSRDTEIAMGAYQPTYTWARKNSHPHGQVYGYRMSLWAEHLGILEKAFDE 778
Query: 778 PQSLECMQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGG 837
PQSLECM+ VN+ + NWKA+V + KEMRGHLMQYP+Q+S+ G+VS L G++TFPDVGG
Sbjct: 779 PQSLECMKLVNKTSRHNWKAYVSEESKEMRGHLMQYPIQVSKSGEVSALQGHETFPDVGG 838
Query: 838 KILGAPTSLPDALTT 852
K+LGA T+LPD LTT
Sbjct: 839 KVLGASTNLPDVLTT 853
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739589|emb|CBI29771.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1318 bits (3410), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/857 (72%), Positives = 720/857 (84%), Gaps = 20/857 (2%)
Query: 1 MGSEGNVTPKSTSSGSAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCR 60
M + V ++ + S E VFLHG+LDL ILEAKSLPNMDL TE +R+C NM G C
Sbjct: 1 MAGDSTVHGETLVNVVEVSGEAVFLHGELDLWILEAKSLPNMDLATERVRRCFNMFGSCT 60
Query: 61 FPFK-KTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVN 119
PFK + + S HS+ITS+PYVSVCL+GAT+AQTRVI N ENP W EHFCVPVAH V+
Sbjct: 61 SPFKIRHKHSSKHHSIITSDPYVSVCLAGATIAQTRVIPNSENPSWGEHFCVPVAHPVMK 120
Query: 120 LEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179
+EFHVKDNDILGA+LIGVV I VEK++ GN V WFPI GS G LKP+P+LH
Sbjct: 121 VEFHVKDNDILGAQLIGVVGISVEKLISGNAVSGWFPIVGSQGNPLKPYPELH------- 173
Query: 180 IGQIPLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHG 239
DGVGAG Y GVP TYFPL K G++TLYQDAHVP GMLPEI LDGGK F+ G
Sbjct: 174 --------DGVGAGSGYLGVPNTYFPLHKGGSITLYQDAHVPKGMLPEILLDGGKIFQQG 225
Query: 240 QCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRV 299
QCWEEICHA+LEA HLIYIIGWS+FHPVKL+REPTKP+P+ GELS GELLK+KS+EGVRV
Sbjct: 226 QCWEEICHAMLEAHHLIYIIGWSIFHPVKLLREPTKPVPAGGELSLGELLKYKSEEGVRV 285
Query: 300 LLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVG 359
L+LIWDDKTSHD L KTEGVMQTHDEETRKFFKHS V+CVL+PRYASNKLSIFKQQVVG
Sbjct: 286 LMLIWDDKTSHDRLLFKTEGVMQTHDEETRKFFKHSGVHCVLSPRYASNKLSIFKQQVVG 345
Query: 360 TLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPS 419
TLFTHHQKCV++DT A GNNRKI+AFIGGLDLCDGRYDTPEHRLF DL+TVF+NDFHNP+
Sbjct: 346 TLFTHHQKCVLLDTQAPGNNRKITAFIGGLDLCDGRYDTPEHRLFSDLDTVFSNDFHNPT 405
Query: 420 LPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINL 479
PS A+GPR+PWHD+HCKVEGPAAYDI+ NFEQRWR++ KWR+FRLKKVTHW++D+LI L
Sbjct: 406 FPSRARGPRQPWHDLHCKVEGPAAYDIMTNFEQRWRKAAKWRDFRLKKVTHWHEDALIRL 465
Query: 480 DRIG--ITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVC 537
DRI ITPS+GP R +E++ E WH+QVFRSIDSGSV+GFPK V++A AQNLVC
Sbjct: 466 DRISWIITPSSGPTGDHAVRVTTEEDPETWHVQVFRSIDSGSVRGFPKLVQDAEAQNLVC 525
Query: 538 AKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKN-AGADNLIPMELALKI 596
K+LK+D+SIH+AYVKAIRSAQHFIYIENQYF+GS+YHWPSYKN AGADNLIPMELALKI
Sbjct: 526 GKNLKIDRSIHAAYVKAIRSAQHFIYIENQYFLGSAYHWPSYKNAAGADNLIPMELALKI 585
Query: 597 VSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKY 656
SKI+ANE F VY+V+PMWPEG P SA+VQEIL+WQGQTMSMMY+I+ QA+ GLS+ +
Sbjct: 586 SSKISANEHFRVYIVVPMWPEGVPTSASVQEILFWQGQTMSMMYQIIGQAIHKAGLSDTH 645
Query: 657 HPQDYLSFYCLGKREAPPLDRS-QMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVI 715
HPQDYL+FYCLGKREA + S Q + +ENRAL AQKFRRFMIYVHAKGMIVDDEYV+
Sbjct: 646 HPQDYLNFYCLGKREASSTESSAQTSNSSENRALGLAQKFRRFMIYVHAKGMIVDDEYVL 705
Query: 716 MGSANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTF 775
+GSANINQRSL+GSRDTEIAMGAYQP YTW+ KK+HP GQVYGYR SLWAEHLGTLED+F
Sbjct: 706 IGSANINQRSLDGSRDTEIAMGAYQPSYTWSGKKTHPHGQVYGYRMSLWAEHLGTLEDSF 765
Query: 776 REPQSLECMQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDV 835
+P+SLEC+++VN IA NW+ + D +KEM GHLMQYP+Q+S+ G VSTLPG++ FPDV
Sbjct: 766 CQPESLECIRQVNSIAKNNWQIYAADENKEMTGHLMQYPIQVSKNGNVSTLPGHECFPDV 825
Query: 836 GGKILGAPTSLPDALTT 852
GGK+LG+PT+LPDALTT
Sbjct: 826 GGKVLGSPTNLPDALTT 842
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511029|ref|XP_003524234.1| PREDICTED: phospholipase D delta-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1270 bits (3287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/858 (69%), Positives = 707/858 (82%), Gaps = 7/858 (0%)
Query: 1 MGSEGNVTPKSTSSGSAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCR 60
M G ++ S + + PVFLHGDLDL I+EAKSLPN+DL +E++RKC M C
Sbjct: 1 MDCHGGISQSSPNREYEGLNGPVFLHGDLDLLIIEAKSLPNLDLSSETIRKCITMGNMCH 60
Query: 61 FPF-KKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVN 119
PF K + SG+ MITS+PYVSVC++GAT+AQTRVI+NCENP WDE F VPVAH
Sbjct: 61 PPFIKGLKTHSGKDKMITSDPYVSVCIAGATIAQTRVIANCENPLWDEQFIVPVAHPAQK 120
Query: 120 LEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179
LEF VKDNDILGAELIGVV+IPV+KI+ GN V+DWFPI G YG LKP+P+LH+S+QY+
Sbjct: 121 LEFLVKDNDILGAELIGVVEIPVQKIIAGNTVNDWFPIIGQYGNCLKPYPELHISVQYRQ 180
Query: 180 IGQIPLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHG 239
IG G G GVPKTYFPLRK G++TLYQDAH+P GMLPEI L+GGK F+H
Sbjct: 181 IGVNRSESISSGDGKAL-GVPKTYFPLRKGGSVTLYQDAHLPDGMLPEITLEGGKVFQHN 239
Query: 240 QCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRV 299
+CWE+ICHA+LEA HLIYIIGWSV+HPV+LVRE TKPLPS GELS GELLK+KSQEG+RV
Sbjct: 240 KCWEDICHAILEAHHLIYIIGWSVYHPVRLVREATKPLPSGGELSLGELLKYKSQEGLRV 299
Query: 300 LLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVG 359
++LIWDD+TSHD +KT+GVMQTHDEET+KFFKHS+V+CVL+PRYASNKLSIFKQQVVG
Sbjct: 300 VMLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQVVG 359
Query: 360 TLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPS 419
TLFTHHQKCV+VD+ SGNNRKI+AFIGGLDLCDGRYDTPEHRLF DL+TVF NDFHNP+
Sbjct: 360 TLFTHHQKCVLVDSLGSGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFHNDFHNPT 419
Query: 420 LPSHAK--GPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLI 477
H+ PR+PWHD+HCK+EGPAAYDIL NFEQRWR++ KWR+FRLKKVT+W+DD+L+
Sbjct: 420 FQLHSNSCAPRQPWHDLHCKIEGPAAYDILTNFEQRWRKAKKWRDFRLKKVTNWHDDALL 479
Query: 478 NLDRIG--ITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNL 535
LDRI + PS + K E + E+W++Q+FRSIDSGSVKGFPKDV++A AQNL
Sbjct: 480 RLDRISWIVKPSPSSNGDKSVHVTDENDPESWNVQIFRSIDSGSVKGFPKDVDKAKAQNL 539
Query: 536 VCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKN-AGADNLIPMELAL 594
C K+LKVD+SIH+AYV+AIRSA+HF+YIENQYF+GSSYHWPSYKN AGA++L+PMELAL
Sbjct: 540 FCGKNLKVDQSIHTAYVRAIRSAEHFVYIENQYFLGSSYHWPSYKNNAGANHLVPMELAL 599
Query: 595 KIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSN 654
KI KI ANERF VY+VIPMWPEG P SAAVQEIL+WQGQTMSMMYKIVA AL+ GLS
Sbjct: 600 KIAGKIGANERFCVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYKIVADALEKAGLSY 659
Query: 655 KYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYV 714
+YHPQDYL+FYCLGKRE + S +ENRAL + +KFRRFMIYVHAKGM+VDDEYV
Sbjct: 660 QYHPQDYLNFYCLGKREPQSTNISPTPNPSENRALVSVKKFRRFMIYVHAKGMVVDDEYV 719
Query: 715 IMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDT 774
I+GSANINQRSL+GSRDTEIAMGAYQP YTW K +HPRGQVYGYR SLWAEHLG+L+
Sbjct: 720 IIGSANINQRSLDGSRDTEIAMGAYQPKYTWTEKNAHPRGQVYGYRMSLWAEHLGSLDHC 779
Query: 775 FREPQSLECMQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPD 834
F EP +LEC++ VN+IA NW +V + MRGHLMQYPV+ISR+GKVS L Y++FPD
Sbjct: 780 FAEPHNLECVRHVNKIAKRNWDIYVSEEENRMRGHLMQYPVKISRDGKVSALDDYESFPD 839
Query: 835 VGGKILGAPTSLPDALTT 852
VGGKILG+P SLPDALTT
Sbjct: 840 VGGKILGSPNSLPDALTT 857
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357519333|ref|XP_003629955.1| Phospholipase D2 [Medicago truncatula] gi|355523977|gb|AET04431.1| Phospholipase D2 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1262 bits (3266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/844 (71%), Positives = 705/844 (83%), Gaps = 16/844 (1%)
Query: 17 AASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPF-KKTRGLSGRHSM 75
++ PVFLHGDLDL I+EAKSLPN+DL TE++RKC M C PF K + SG+ +
Sbjct: 7 GGNEYPVFLHGDLDLFIIEAKSLPNLDLSTEAIRKCLTMGNSCTPPFVKGLKTHSGKDKI 66
Query: 76 ITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELI 135
ITS+PYVS+CL+GAT+AQTRVI NCENP WDEHF VPVAH +EF VKDNDILGAELI
Sbjct: 67 ITSDPYVSICLAGATIAQTRVIPNCENPLWDEHFLVPVAHPAHKIEFLVKDNDILGAELI 126
Query: 136 GVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPD 195
GVV+IPV+KIL GN ++DWFPI G YG LKP+P+LH+S+QY I + +D G
Sbjct: 127 GVVEIPVQKILSGNILNDWFPIIGQYGNCLKPYPELHISIQYM---SIDVNEDN---GSV 180
Query: 196 YQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHL 255
GVP TYFPLR+ GN+TLYQDAHVP GMLPEI L+GGK F+H +CWE+ICHA+LEA H+
Sbjct: 181 NYGVPGTYFPLRRGGNVTLYQDAHVPDGMLPEIELEGGKMFQHSKCWEDICHAILEAHHM 240
Query: 256 IYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFI 315
IYIIGWS+FHPVKLVREPTKPLPS GELS GELLK+KSQEG+RV++LIWDD+TSHD +
Sbjct: 241 IYIIGWSIFHPVKLVREPTKPLPSGGELSLGELLKYKSQEGLRVVMLIWDDRTSHDKFLL 300
Query: 316 KTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPA 375
KTEGVMQTHDEET+KFFKHS+V+C+L+PRYASNKLSIFKQQVVGTLFTHHQKCV+VDT
Sbjct: 301 KTEGVMQTHDEETKKFFKHSTVHCILSPRYASNKLSIFKQQVVGTLFTHHQKCVLVDTQG 360
Query: 376 SGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPS--LPSHAKGPREPWHD 433
SGNNRKI+AFIGGLDLCDGRYDTPEHRLF DL+TVF NDFHNP+ L S++ PR+PWHD
Sbjct: 361 SGNNRKITAFIGGLDLCDGRYDTPEHRLFSDLDTVFQNDFHNPTFQLNSNSSAPRQPWHD 420
Query: 434 MHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIG--ITPSTGPH 491
+HCK+EGPAAYDIL NFEQR R++ KWR+FRL+KVT+W+DD+L+ LDRI + PS+GP
Sbjct: 421 LHCKIEGPAAYDILTNFEQRSRKAKKWRDFRLRKVTNWHDDALLRLDRISWIVKPSSGPD 480
Query: 492 SYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAY 551
K R E + ENWH+QVFRSIDSGSVKGFPKDV++A AQNL+C K+LKVD+SIH+AY
Sbjct: 481 GDKSVRVTEETDPENWHVQVFRSIDSGSVKGFPKDVDKAKAQNLLCGKNLKVDQSIHAAY 540
Query: 552 VKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVV 611
VKAIRSAQ F+YIENQYF+GSSYHWP+Y+NAGA++LIPMELALKI SKI A+ERFSVY+V
Sbjct: 541 VKAIRSAQRFVYIENQYFLGSSYHWPTYRNAGANHLIPMELALKIASKIIAHERFSVYIV 600
Query: 612 IPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKRE 671
IPMWPEG P SAAVQEIL+WQGQTMSMMYKIVA AL GLS YHPQDYL+FYCLGKRE
Sbjct: 601 IPMWPEGVPTSAAVQEILFWQGQTMSMMYKIVADALAKAGLSECYHPQDYLNFYCLGKRE 660
Query: 672 APPLDR---SQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEG 728
P R S +Q +ENRAL + +KFRRFMIYVHAKGMIVDD YVI+GSANINQRS++G
Sbjct: 661 --PHSRESLSTQSQSSENRALVSVKKFRRFMIYVHAKGMIVDDGYVIIGSANINQRSMDG 718
Query: 729 SRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVN 788
SRDTEIAMGAYQP +T A K S PRGQVYGYR SLWAEHLG ++ +F EP +LEC++RVN
Sbjct: 719 SRDTEIAMGAYQPKHTLAEKNSLPRGQVYGYRMSLWAEHLGGIDGSFTEPHTLECVRRVN 778
Query: 789 RIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTSLPD 848
RIA +NW +V + +M+G+LM YPV +SR GKVST G + FPDVGGKILG+ SLPD
Sbjct: 779 RIARKNWSIYVSEESLQMKGNLMHYPVHVSRNGKVSTQEGQEYFPDVGGKILGSQNSLPD 838
Query: 849 ALTT 852
ALTT
Sbjct: 839 ALTT 842
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528406|ref|XP_003532794.1| PREDICTED: phospholipase D delta-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1256 bits (3249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/858 (68%), Positives = 707/858 (82%), Gaps = 7/858 (0%)
Query: 1 MGSEGNVTPKSTSSGSAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCR 60
M G + S + +E VFLHGDLDL I+EAKSLPN+DL TE++RKC M C
Sbjct: 1 MDCHGGICQSSPNREHEGLNEHVFLHGDLDLLIVEAKSLPNLDLSTEAVRKCITMGNMCH 60
Query: 61 FPF-KKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVN 119
PF K + SG+ MITS+PYVSVC++GAT+AQTRVI+NCENP WDE F VPVAH
Sbjct: 61 PPFIKGLKTHSGKDKMITSDPYVSVCIAGATIAQTRVIANCENPLWDEQFIVPVAHPAQK 120
Query: 120 LEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179
LEF VKDND+LGAELIGVV+IPV+KI+ GN ++DWFPI G YG LKP+P+LH+S+QY+
Sbjct: 121 LEFLVKDNDLLGAELIGVVEIPVQKIIAGNTINDWFPIIGQYGNCLKPYPELHISVQYRQ 180
Query: 180 IGQIPLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHG 239
IG G G GVPKTYFPLRK G++TLYQDAH+P GMLPEI L+GGK F+
Sbjct: 181 IGVNRSESISSGDGKAL-GVPKTYFPLRKGGSVTLYQDAHLPDGMLPEIPLEGGKVFQQN 239
Query: 240 QCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRV 299
+CWE+ICHA+LEA HLIYIIGWSV+HPV+LVRE TKPLPS GELS GELLK+KSQEG+RV
Sbjct: 240 KCWEDICHAILEAHHLIYIIGWSVYHPVRLVREATKPLPSGGELSLGELLKYKSQEGLRV 299
Query: 300 LLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVG 359
++LIWDD+TSHD +KT+GVMQTHDEET+KFFKHS+V+CVL+PRYASNKLSIFKQQVVG
Sbjct: 300 VMLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQVVG 359
Query: 360 TLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPS 419
TLFTHHQKCV+VD+ SGNNRKI+AF+GGLDLCDGRYDTPEHRLF DL+TVF NDFHNP+
Sbjct: 360 TLFTHHQKCVLVDSLGSGNNRKITAFMGGLDLCDGRYDTPEHRLFRDLDTVFHNDFHNPT 419
Query: 420 --LPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLI 477
L S++ PR+PWHD+HCK+EGPAAYDIL NFEQRWR++ KWR+FRLKKVT+W+DD+L+
Sbjct: 420 FQLNSNSCAPRQPWHDLHCKIEGPAAYDILTNFEQRWRKAKKWRDFRLKKVTNWHDDALL 479
Query: 478 NLDRIG--ITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNL 535
LDRI + PS K EK+ E+W++Q+FRSIDSGSVKGFPKDV++A +QNL
Sbjct: 480 RLDRISWIVKPSPCSKGDKSVHVTDEKDPESWNVQIFRSIDSGSVKGFPKDVDKAKSQNL 539
Query: 536 VCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKN-AGADNLIPMELAL 594
+C K+LKVD+SIH+AYV+AIRSA+ F+YIENQYF+GSSYHWPSYKN AGA++L+PMELAL
Sbjct: 540 LCGKNLKVDQSIHTAYVRAIRSAERFVYIENQYFLGSSYHWPSYKNNAGANHLVPMELAL 599
Query: 595 KIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSN 654
KI KI ANERF VY+VIPMWPEG P SAAVQEIL+WQGQTMSMMYKI+A AL+ GLS+
Sbjct: 600 KIAGKIGANERFCVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYKIIADALEKAGLSD 659
Query: 655 KYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYV 714
KYHPQDYL+FYCLGKRE + S +ENRAL + +KFRRFMIYVHAKGM++DDEYV
Sbjct: 660 KYHPQDYLNFYCLGKREPQSTNISPTPNPSENRALVSVKKFRRFMIYVHAKGMVIDDEYV 719
Query: 715 IMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDT 774
I+GSANINQRSL+GSRDTEIAMGAYQP+YTW K +HPRGQVYGYR SLWAEHL L+
Sbjct: 720 IIGSANINQRSLDGSRDTEIAMGAYQPNYTWTEKNAHPRGQVYGYRMSLWAEHLADLDHC 779
Query: 775 FREPQSLECMQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPD 834
F EP +LEC++ VN+IA +NW +V + MRGHLMQYPV+IS++GKVS L Y++FPD
Sbjct: 780 FTEPHNLECVRHVNKIAKQNWDIYVSEEGNRMRGHLMQYPVKISKDGKVSALDDYESFPD 839
Query: 835 VGGKILGAPTSLPDALTT 852
VGGK+LG+P SLPDALT
Sbjct: 840 VGGKVLGSPNSLPDALTA 857
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459766|ref|XP_002284764.1| PREDICTED: phospholipase D delta-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1181 bits (3056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/839 (65%), Positives = 676/839 (80%), Gaps = 8/839 (0%)
Query: 19 SDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITS 78
S+ V+LHGDLDL+I+EA+ LPNMDL++E +R+C CR PF R H +ITS
Sbjct: 5 SETIVYLHGDLDLNIIEARYLPNMDLMSERIRRCFTAFDSCRAPFSGGRKKGRHHKIITS 64
Query: 79 NPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVV 138
+PYV+VCL+GATVA+TRVISN ++P W+EH +P+AH V +EF VKDND+ GA++IG
Sbjct: 65 DPYVTVCLAGATVARTRVISNSQHPVWNEHLKIPLAHPVSCVEFQVKDNDVFGADMIGTA 124
Query: 139 QIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDYQG 198
+ E+I G+ + DWFPI G GK KP +++ M++ PLY G+ PD+ G
Sbjct: 125 TVSAERIRTGDSISDWFPILGFNGKPPKPDSAIYLKMRFISSEINPLYTRGI-TDPDHFG 183
Query: 199 VPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYI 258
V ++YFP+R G++TLYQDAHVP GMLPE+ LD G ++HG+CWE+ICH++LEA HL+YI
Sbjct: 184 VKQSYFPVRLGGSVTLYQDAHVPNGMLPELELDDGVVYQHGKCWEDICHSILEAHHLVYI 243
Query: 259 IGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318
+GWSV+H VKLVREPT+PLPS G L+ GELLK+KSQEGVRVLLL+WDDKTSH + T
Sbjct: 244 VGWSVYHKVKLVREPTRPLPSGGNLNLGELLKYKSQEGVRVLLLVWDDKTSHSRFLVNTV 303
Query: 319 GVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGN 378
GVMQTHDEETRKFFKHSSV CVL+PRYAS+KLSIFKQQVVGTLFTHHQKCVIVDT ASGN
Sbjct: 304 GVMQTHDEETRKFFKHSSVLCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGN 363
Query: 379 NRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKV 438
NRKI+AF+GGLDLCDGRYDTPEHRL DL+TVF ND+HNP+ + +KGPR+PWHD+HCK+
Sbjct: 364 NRKITAFLGGLDLCDGRYDTPEHRLCHDLDTVFQNDYHNPTFSAVSKGPRQPWHDLHCKI 423
Query: 439 EGPAAYDILINFEQRWRRSTKWREF--RLKKVTHWYDDSLINLDRIG--ITPS-TGPHSY 493
EGPAAYD+L NFEQRWR++TKW EF R K++THW++D+LI L+RI ++PS + P+
Sbjct: 424 EGPAAYDVLTNFEQRWRKATKWSEFGRRFKRITHWHEDALIKLERISWILSPSPSVPYDD 483
Query: 494 KPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVK 553
E + ENWH+QVFRSIDSGS++GFPKDV A AQNLVCAK+L +DKSI +AY++
Sbjct: 484 PSLWVSEENDPENWHVQVFRSIDSGSLRGFPKDVPSAEAQNLVCAKNLVIDKSIQTAYIQ 543
Query: 554 AIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIP 613
AIRSAQHFIYIENQYFIGSSY WPSYKNAGADNLIPMELALKI SKI A ERFSVYVVIP
Sbjct: 544 AIRSAQHFIYIENQYFIGSSYAWPSYKNAGADNLIPMELALKIASKIRAKERFSVYVVIP 603
Query: 614 MWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAP 673
MWPEGNP+ A+VQEIL+WQGQTM MMY I+AQ LQ L + HPQDYL+FYCLG RE P
Sbjct: 604 MWPEGNPSCASVQEILFWQGQTMQMMYDIIAQELQSMQLEDA-HPQDYLNFYCLGNREEP 662
Query: 674 PLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTE 733
P + S N Q + ++ ++KF RFMIYVHAKGMIVDDEYVI+GSANINQRS+ GSRDTE
Sbjct: 663 PKEVSSSNTQASD-GVSTSKKFHRFMIYVHAKGMIVDDEYVILGSANINQRSMAGSRDTE 721
Query: 734 IAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVNRIAGE 793
IAMGAYQP +TWA KK HP GQ+YGYR SLWAEHLG + ++F+EPQ+L+C++ VN++A E
Sbjct: 722 IAMGAYQPRHTWAKKKKHPHGQIYGYRMSLWAEHLGMINNSFKEPQTLDCVKNVNKMAEE 781
Query: 794 NWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTSLPDALTT 852
NWK F DA+ ++GHL++YP+Q+ +GKV LPG++TFPD GGK+LG +LPDALTT
Sbjct: 782 NWKRFTSDAYTPLQGHLLKYPIQVDVDGKVRPLPGHETFPDFGGKVLGTRCNLPDALTT 840
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218199398|gb|EEC81825.1| hypothetical protein OsI_25571 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 1170 bits (3028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/840 (65%), Positives = 666/840 (79%), Gaps = 9/840 (1%)
Query: 16 SAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSM 75
SA S + LHGDLD+ I+EAK LPNMDL+TE MRKC G C K+ + +
Sbjct: 5 SAESGTSMLLHGDLDIQIVEAKCLPNMDLMTERMRKCFTGYGACSTECGKSDPHTDVRKI 64
Query: 76 ITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELI 135
ITS+PYVSVCLSGATVAQTRVI+N ENP WDEHF V VAHSV +EFHVKDND+ GAELI
Sbjct: 65 ITSDPYVSVCLSGATVAQTRVIANSENPKWDEHFYVQVAHSVSRVEFHVKDNDVFGAELI 124
Query: 136 GVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGA-GP 194
GV +PVE I G+ V WFPI+G Y +K P+LH+S+QYKPI Q PLYKDGVG+ G
Sbjct: 125 GVASVPVENITPGDTVSGWFPISGQYSNPMKASPELHLSIQYKPIEQNPLYKDGVGSDGC 184
Query: 195 DYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARH 254
GVP YFPLRK G +TLYQDAH+P P+I +DGG+ + +CWE+ICHA+ EA H
Sbjct: 185 QSIGVPNAYFPLRKGGMVTLYQDAHIPDDFCPKIEIDGGRVYEQNKCWEDICHAIAEAHH 244
Query: 255 LIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLF 314
LIYIIGWSV+HPVKLVRE TKP+P+ + G LLK K QEGVRV++L+WDDKTSHD
Sbjct: 245 LIYIIGWSVYHPVKLVRESTKPVPNGSPPTLGGLLKTKVQEGVRVIVLLWDDKTSHDKFL 304
Query: 315 IKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTP 374
+KT+G+M THDEE RKFF+HS V+CVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDT
Sbjct: 305 LKTDGLMHTHDEEARKFFRHSGVHCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTQ 364
Query: 375 ASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDM 434
GNNRKI+AFIGGLDLCDGRYDTPEHRLF DL+TVF +DFHNP+ + GPR+PWHD+
Sbjct: 365 VIGNNRKITAFIGGLDLCDGRYDTPEHRLFKDLDTVFKDDFHNPTFQVNKSGPRQPWHDL 424
Query: 435 HCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIG--ITPSTGPHS 492
HCK+EGPAAYDIL NFEQRWR+S KW+ +++ W+ D+L+ ++R+ ++PS +
Sbjct: 425 HCKIEGPAAYDILTNFEQRWRKSAKWK-VSVRRAVSWHHDTLVKINRMSWIVSPSADELN 483
Query: 493 YKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYV 552
R + + ENWH+Q+FRSIDSGSVKGFPK V+EA +QNLVCAK+L++DKSIH+AYV
Sbjct: 484 ---ARVCEQDDPENWHVQIFRSIDSGSVKGFPKLVQEAESQNLVCAKNLQIDKSIHNAYV 540
Query: 553 KAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVI 612
KAIRSAQH+IYIENQYFIGSSY+W S ++AGA+NLIP+ELA+KI KI A ERF+ Y+VI
Sbjct: 541 KAIRSAQHYIYIENQYFIGSSYYWSSNRSAGAENLIPIELAIKIARKIKARERFAAYIVI 600
Query: 613 PMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREA 672
PMWPEGNP +AA+QEIL+WQGQTMSMMYKIVA+ALQ GL + HPQDYL+FYCLGKRE
Sbjct: 601 PMWPEGNPTTAAMQEILFWQGQTMSMMYKIVAEALQKEGLDDT-HPQDYLNFYCLGKREV 659
Query: 673 PPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDT 732
D S +Q EN QKF+RFMIYVH+KGMIVDDEYV++GSANINQRS++GSRDT
Sbjct: 660 SN-DVSTTSQSNENSPQRLVQKFKRFMIYVHSKGMIVDDEYVLIGSANINQRSMDGSRDT 718
Query: 733 EIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVNRIAG 792
EIAMGAYQPHY+WA +K PRGQVYGYR SLWAEHLGT+E+ FR P S+EC+++VN +A
Sbjct: 719 EIAMGAYQPHYSWAGRKKAPRGQVYGYRMSLWAEHLGTVEECFRWPHSVECVRQVNEMAE 778
Query: 793 ENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTSLPDALTT 852
ENW +V MRGHLM+YP+ + R+G+V + GY+ FPDVGGK+LG +SLP+ALTT
Sbjct: 779 ENWARYVSPEMVNMRGHLMRYPINVERDGRVGPVHGYECFPDVGGKVLGTHSSLPNALTT 838
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115471451|ref|NP_001059324.1| Os07g0260400 [Oryza sativa Japonica Group] gi|34394829|dbj|BAC84242.1| putative phospholipase D [Oryza sativa Japonica Group] gi|113610860|dbj|BAF21238.1| Os07g0260400 [Oryza sativa Japonica Group] gi|222636783|gb|EEE66915.1| hypothetical protein OsJ_23763 [Oryza sativa Japonica Group] gi|354805203|gb|AER41621.1| phospholipase+D [Oryza glumipatula] | Back alignment and taxonomy information |
|---|
Score = 1170 bits (3026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/840 (65%), Positives = 666/840 (79%), Gaps = 9/840 (1%)
Query: 16 SAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSM 75
SA S + LHGDLD+ I+EAK LPNMDL+TE MRKC G C K+ + +
Sbjct: 5 SAESGTSMLLHGDLDIQIVEAKCLPNMDLMTERMRKCFTGYGACSTECGKSDPHTDVRKI 64
Query: 76 ITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELI 135
ITS+PYVSVCLSGATVAQTRVI+N ENP WDEHF V VAHSV +EFHVKDND+ GAELI
Sbjct: 65 ITSDPYVSVCLSGATVAQTRVIANSENPKWDEHFYVQVAHSVSRVEFHVKDNDVFGAELI 124
Query: 136 GVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGA-GP 194
GV +PVE I G+ V WFPI+G Y +K P+LH+S+QYKPI Q PLYKDGVG+ G
Sbjct: 125 GVASVPVENITPGDTVSGWFPISGQYSNPMKASPELHLSIQYKPIEQNPLYKDGVGSDGC 184
Query: 195 DYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARH 254
GVP YFPLRK G +TLYQDAH+P P+I +DGG+ + +CWE+ICHA+ EA H
Sbjct: 185 QSIGVPNAYFPLRKGGMVTLYQDAHIPDDFCPKIEIDGGRVYEQNKCWEDICHAIAEAHH 244
Query: 255 LIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLF 314
LIYIIGWS++HPVKLVRE TKP+P+ + G LLK K QEGVRV++L+WDDKTSHD
Sbjct: 245 LIYIIGWSLYHPVKLVRESTKPVPNGSPPTLGGLLKTKVQEGVRVIVLLWDDKTSHDKFL 304
Query: 315 IKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTP 374
+KT+G+M THDEE RKFF+HS V+CVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDT
Sbjct: 305 LKTDGLMHTHDEEARKFFRHSGVHCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTQ 364
Query: 375 ASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDM 434
GNNRKI+AFIGGLDLCDGRYDTPEHRLF DL+TVF +DFHNP+ + GPR+PWHD+
Sbjct: 365 VIGNNRKITAFIGGLDLCDGRYDTPEHRLFKDLDTVFKDDFHNPTFQVNKSGPRQPWHDL 424
Query: 435 HCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIG--ITPSTGPHS 492
HCK+EGPAAYDIL NFEQRWR+S KW+ +++ W+ D+L+ ++R+ ++PS +
Sbjct: 425 HCKIEGPAAYDILTNFEQRWRKSAKWK-VSVRRAVSWHHDTLVKINRMSWIVSPSADELN 483
Query: 493 YKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYV 552
R + + ENWH+Q+FRSIDSGSVKGFPK V+EA +QNLVCAK+L++DKSIH+AYV
Sbjct: 484 ---ARVCEQDDPENWHVQIFRSIDSGSVKGFPKLVQEAESQNLVCAKNLQIDKSIHNAYV 540
Query: 553 KAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVI 612
KAIRSAQH+IYIENQYFIGSSY+W S ++AGA+NLIP+ELA+KI KI A ERF+ Y+VI
Sbjct: 541 KAIRSAQHYIYIENQYFIGSSYYWSSNRSAGAENLIPIELAIKIARKIKARERFAAYIVI 600
Query: 613 PMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREA 672
PMWPEGNP +AA+QEIL+WQGQTMSMMYKIVA+ALQ GL + HPQDYL+FYCLGKRE
Sbjct: 601 PMWPEGNPTTAAMQEILFWQGQTMSMMYKIVAEALQKEGLDDT-HPQDYLNFYCLGKREV 659
Query: 673 PPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDT 732
D S +Q EN QKF+RFMIYVH+KGMIVDDEYV++GSANINQRS++GSRDT
Sbjct: 660 SN-DVSTTSQSNENSPQRLVQKFKRFMIYVHSKGMIVDDEYVLIGSANINQRSMDGSRDT 718
Query: 733 EIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVNRIAG 792
EIAMGAYQPHY+WA +K PRGQVYGYR SLWAEHLGT+E+ FR P S+EC+++VN +A
Sbjct: 719 EIAMGAYQPHYSWAGRKKAPRGQVYGYRMSLWAEHLGTVEECFRWPHSVECVRQVNEMAE 778
Query: 793 ENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTSLPDALTT 852
ENW +V MRGHLM+YP+ + R+G+V + GY+ FPDVGGK+LG +SLP+ALTT
Sbjct: 779 ENWARYVSPEMVNMRGHLMRYPINVERDGRVGPVHGYECFPDVGGKVLGTHSSLPNALTT 838
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 852 | ||||||
| TAIR|locus:2064607 | 1083 | PLDBETA1 "phospholipase D beta | 0.901 | 0.709 | 0.581 | 2e-253 | |
| TAIR|locus:2137035 | 866 | PLDGAMMA3 "phospholipase D gam | 0.960 | 0.944 | 0.547 | 1.7e-247 | |
| TAIR|locus:2126001 | 927 | PLDBETA2 "phospholipase D beta | 0.910 | 0.837 | 0.565 | 9.9e-245 | |
| TAIR|locus:2137045 | 858 | PLDGAMMA1 "phospholipase D gam | 0.907 | 0.900 | 0.563 | 2.1e-244 | |
| TAIR|locus:2137025 | 856 | PLDGAMMA2 "phospholipase D gam | 0.949 | 0.945 | 0.539 | 5.6e-242 | |
| UNIPROTKB|P86387 | 808 | PLD1 "Phospholipase D alpha 1" | 0.874 | 0.922 | 0.468 | 8.2e-186 | |
| TAIR|locus:2125314 | 868 | PLDDELTA "phospholipase D delt | 0.603 | 0.592 | 0.629 | 2.5e-184 | |
| TAIR|locus:2093227 | 810 | PLDALPHA1 "phospholipase D alp | 0.874 | 0.919 | 0.462 | 2.2e-183 | |
| TAIR|locus:2035211 | 810 | PLDALPHA2 "phospholipase D alp | 0.875 | 0.920 | 0.463 | 4.7e-183 | |
| TAIR|locus:2145452 | 820 | PLDALPHA3 "phospholipase D alp | 0.852 | 0.885 | 0.468 | 5e-179 |
| TAIR|locus:2064607 PLDBETA1 "phospholipase D beta 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2440 (864.0 bits), Expect = 2.0e-253, P = 2.0e-253
Identities = 454/781 (58%), Positives = 579/781 (74%)
Query: 74 SMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAE 133
S ITS+PYVSV ++GA + +T V+SN ENP W +HF VPVAH + F VKD+D++G++
Sbjct: 312 SKITSDPYVSVSVAGAVIGRTYVMSNSENPVWMQHFYVPVAHHAAEVHFVVKDSDVVGSQ 371
Query: 134 LIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAG 193
LIG+V IPVE+I G +++ +PI S GK KP L +S+QY P+ ++ +Y GVGAG
Sbjct: 372 LIGLVTIPVEQIYSGAKIEGTYPILNSNGKPCKPGANLSLSIQYTPMDKLSVYHHGVGAG 431
Query: 194 PDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEAR 253
PDYQGVP TYFPLRK G + LYQDAHVP GMLP I LD G ++ HG+CW ++ A+ +AR
Sbjct: 432 PDYQGVPGTYFPLRKGGTVRLYQDAHVPEGMLPGIRLDNGMSYEHGKCWHDMFDAIRQAR 491
Query: 254 HLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNL 313
LIYI GWSV+H VKL+R+ P E + GELL+ KSQEGVRVLLLIWDD TS L
Sbjct: 492 RLIYITGWSVWHKVKLIRDKLGPA---SECTLGELLRSKSQEGVRVLLLIWDDPTSRSIL 548
Query: 314 FIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDT 373
KT+GVM THDEETR+FFKHSSV +L PR A + S KQ+ VGT++THHQK VIVD
Sbjct: 549 GYKTDGVMATHDEETRRFFKHSSVQVLLCPRNAGKRHSWVKQREVGTIYTHHQKNVIVDA 608
Query: 374 PASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKG-PREPWH 432
A GN RKI AF+GGLDLCDGRYDTP+H LF L T+ +DFHNP+ + G PREPWH
Sbjct: 609 DAGGNRRKIIAFVGGLDLCDGRYDTPQHPLFRTLQTIHKDDFHNPTFTGNLSGCPREPWH 668
Query: 433 DMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHS 492
D+H K++GPAAYD+L NFE+RW ++ K +KK YDD+L+ +DRI P S
Sbjct: 669 DLHSKIDGPAAYDVLTNFEERWLKAAK--PSGIKKFKTSYDDALLRIDRI---PDILGVS 723
Query: 493 YKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYV 552
PT SE + E WH+Q+FRSIDS SVKGFPKD ++A +NLVC K++ +D SIH+AYV
Sbjct: 724 DTPTV--SENDPEAWHVQIFRSIDSNSVKGFPKDPKDATCKNLVCGKNVLIDMSIHTAYV 781
Query: 553 KAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVI 612
KAIR+AQHFIYIENQYFIGSSY+W ++K+ GA+NLIPME+ALKI KI ANERF+ Y+VI
Sbjct: 782 KAIRAAQHFIYIENQYFIGSSYNWNAHKDIGANNLIPMEIALKIAEKIRANERFAAYIVI 841
Query: 613 PMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKRE- 671
PMWPEG P AA Q ILYWQ +T+ MMY+ + +AL + GL + PQDYL+F+CLG RE
Sbjct: 842 PMWPEGVPTGAATQRILYWQHKTIQMMYETIYKALVETGLEGAFSPQDYLNFFCLGNREM 901
Query: 672 APPLDRSQMNQQTE-NRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSR 730
+D S + N A ++K RRFM+YVH+KGM+VDDEYV++GSANINQRS+EG+R
Sbjct: 902 VDGIDNSGTGSPSNANTPQALSRKSRRFMVYVHSKGMVVDDEYVVIGSANINQRSMEGTR 961
Query: 731 DTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVNRI 790
DTEIAMGAYQP +TWA K S PRGQ+YGYR SLWAEH+ TL+D F +P+S+EC+++V +
Sbjct: 962 DTEIAMGAYQPQHTWARKHSGPRGQIYGYRMSLWAEHMATLDDCFTQPESIECVRKVRTM 1021
Query: 791 AGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTSLPDAL 850
NWK F + +MRGHL++YPV++ R+GKV LPG +TFPDVGG I+G+ ++ + L
Sbjct: 1022 GERNWKQFAAEEVSDMRGHLLKYPVEVDRKGKVRPLPGSETFPDVGGNIVGSFIAIQENL 1081
Query: 851 T 851
T
Sbjct: 1082 T 1082
|
|
| TAIR|locus:2137035 PLDGAMMA3 "phospholipase D gamma 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2384 (844.3 bits), Expect = 1.7e-247, P = 1.7e-247
Identities = 465/849 (54%), Positives = 601/849 (70%)
Query: 16 SAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPF-KKTRGLSGRHS 74
S+ S LHG+LD+ + EAK LPNMD ++ G F ++ + G +S
Sbjct: 35 SSGSLRVELLHGNLDIWVKEAKHLPNMDGFHNTL------VGGMFFGLGRRNHKVDGENS 88
Query: 75 M-ITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAE 133
ITS+PYV+V +SGA + +T VISN ENP W +HF VPVAHS + F VKD+DI+G++
Sbjct: 89 SKITSDPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAKVHFVVKDSDIIGSQ 148
Query: 134 LIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAG 193
+IG V+IP E++ GN ++ FPI S GK K L +S+QY P+ ++ LY+ GVG G
Sbjct: 149 IIGAVEIPTEQLCSGNRIEGLFPILNSRGKPCKQGAVLSLSIQYIPMERMRLYQKGVGFG 208
Query: 194 PDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEAR 253
+ GVP TYFPLRK G +TLYQDAHV G LP + LDGG +RHG+CWE++ A+ AR
Sbjct: 209 VECVGVPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWEDMADAIRRAR 268
Query: 254 HLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNL 313
LIYI GWSVFHPV+LVR P G L GELLK KSQEGVRVL+L+WDD TS L
Sbjct: 269 RLIYITGWSVFHPVRLVRRNNDPTQ--GTL--GELLKVKSQEGVRVLVLVWDDPTSRSLL 324
Query: 314 FIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDT 373
T+G+M T DEETR+FFKHSSV +L PRY S K+ V T++THHQK +IVD
Sbjct: 325 GFSTKGLMNTSDEETRRFFKHSSVQVLLCPRYGGKGHSFIKKSEVETIYTHHQKTMIVDA 384
Query: 374 PASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAK-GPREPWH 432
A+ N RKI AF+GGLDLC+GR+DTP+H LF L T+ +DFHNP+ + A GPREPWH
Sbjct: 385 EAAQNRRKIVAFVGGLDLCNGRFDTPKHPLFRTLKTIHKDDFHNPNFVTTADDGPREPWH 444
Query: 433 DMHCKVEGPAAYDILINFEQRWRRSTKWREF-RLKKVTHWYDDSLINLDRIGITPSTGPH 491
D+H K++GPAAYD+L NFE+RW +++K R RL+ + DDSL+ LDRI P
Sbjct: 445 DLHSKIDGPAAYDVLANFEERWMKASKPRGIGRLRTSS---DDSLLRLDRI---PDI--M 496
Query: 492 SYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAY 551
+ ++ + E+WH+QVFRSIDS SVKGFPKD +EA +NL+C K++ +D SIH+AY
Sbjct: 497 GLSEASSANDNDPESWHVQVFRSIDSSSVKGFPKDPKEATGRNLLCGKNILIDMSIHAAY 556
Query: 552 VKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVV 611
VKAIRSAQHFIYIENQYF+GSS++W S KN GA+NLIPME+ALKI +KI A E+F+ Y+V
Sbjct: 557 VKAIRSAQHFIYIENQYFLGSSFNWDSNKNLGANNLIPMEIALKIANKIRAREKFAAYIV 616
Query: 612 IPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKRE 671
IPMWPEG P S +Q ILYWQ +TM MMY+ + +AL + GL + PQD+L+F+CLG RE
Sbjct: 617 IPMWPEGAPTSNPIQRILYWQHKTMQMMYQTIYKALVEVGLDGQLEPQDFLNFFCLGTRE 676
Query: 672 A-----PPLDRSQMNQQTENRALAAAQ----KFRRFMIYVHAKGMIVDDEYVIMGSANIN 722
P S N + L AAQ K RRFMIYVH+KGM+VDDE+V++GSANIN
Sbjct: 677 VGTREVPDGTVSVYNSPRKPPQLNAAQVQALKSRRFMIYVHSKGMVVDDEFVLIGSANIN 736
Query: 723 QRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLE 782
QRSLEG+RDTEIAMG YQPH++WA K S PRGQ++GYR SLWAEHLG LE F EP+++E
Sbjct: 737 QRSLEGTRDTEIAMGGYQPHHSWAKKGSRPRGQIFGYRMSLWAEHLGFLEQEFEEPENME 796
Query: 783 CMQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGA 842
C++RV +++ NW+ + + EM GHL++YPVQ+ R GKVS+LPGY+TFPD+GGKI+G+
Sbjct: 797 CVRRVRQLSELNWRQYAAEEVTEMPGHLLKYPVQVDRTGKVSSLPGYETFPDLGGKIIGS 856
Query: 843 PTSLPDALT 851
+ + LT
Sbjct: 857 FLVVEENLT 865
|
|
| TAIR|locus:2126001 PLDBETA2 "phospholipase D beta 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2358 (835.1 bits), Expect = 9.9e-245, P = 9.9e-245
Identities = 447/790 (56%), Positives = 572/790 (72%)
Query: 66 TRGLSGRHSM-ITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHV 124
T + G+ S ITS+PYVS+ ++GA + +T VISN ENP W +HF VPVAH + F V
Sbjct: 147 TNMIEGQLSKKITSDPYVSISVAGAVIGRTYVISNSENPVWQQHFYVPVAHHAAEVHFVV 206
Query: 125 KDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIP 184
KD+D +G++LIG+V IPVE+I G ++ + I S GK KP L +S+QY + ++
Sbjct: 207 KDSDAVGSQLIGIVTIPVEQIYSGARIEGTYSIRDSNGKPCKPGATLSLSIQYTSMNKLS 266
Query: 185 LYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEE 244
+Y GVGAGP YQGVP TYFPLR+ G++TLYQDAHVP GMLP I L G + HG+CW +
Sbjct: 267 VYHSGVGAGPYYQGVPGTYFPLREGGSVTLYQDAHVPEGMLPGIKLGNGMCYEHGKCWHD 326
Query: 245 ICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIW 304
+ HA+ +AR LIYI GWSV+H V+LVR+ K PS E GELL+ KSQEGVRVLLL+W
Sbjct: 327 MFHAICQARRLIYITGWSVWHNVRLVRD--KEDPS-SECRLGELLRSKSQEGVRVLLLVW 383
Query: 305 DDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTH 364
DD TS + L T+GVM THDEETR+FFK SSV +L PR A + S KQ+ VGT++TH
Sbjct: 384 DDPTSQNILGYMTDGVMGTHDEETRRFFKDSSVQVLLCPRNAGKRHSWVKQREVGTIYTH 443
Query: 365 HQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHA 424
HQK +IVD A GN RKI AF+GGLDLCDGRYDTP+H LF L T D+HNP+ +
Sbjct: 444 HQKNLIVDADAGGNRRKIVAFVGGLDLCDGRYDTPQHPLFRTLQTDHNGDYHNPTFTGNV 503
Query: 425 KG-PREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIG 483
G PREPWHD+H K++GPAAYD+L NFE+RW ++ K R+ K+ YDD+L+ +DRI
Sbjct: 504 SGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKAAK--PHRINKLKTSYDDALLRIDRI- 560
Query: 484 ITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKV 543
P PT + ++ E WH+Q+FRSIDS SVKGFPKD + A ++NLVC K++ +
Sbjct: 561 --PDILRVLDAPTVSANDPEA--WHVQIFRSIDSNSVKGFPKDPKYATSKNLVCGKNVLI 616
Query: 544 DKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINAN 603
D SIH+AYVKAIR+AQHFIYIENQYFIGSSY W ++K+ GA+NLIPME+ALKI KI A
Sbjct: 617 DMSIHTAYVKAIRAAQHFIYIENQYFIGSSYDWNAHKDIGANNLIPMEIALKIADKIRAK 676
Query: 604 ERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLS 663
ERF+ Y+VIPMWPEG P AA Q ILYWQ +TM MMY + AL + GL ++Y PQDYL+
Sbjct: 677 ERFAAYIVIPMWPEGVPTGAATQRILYWQHKTMQMMYGTIYNALVEAGLEDEYSPQDYLN 736
Query: 664 FYCLGKREAPPLDRSQM--NQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANI 721
F+CLG RE + + EN +K RRFMIYVH+KGM+VDDEYV++GSANI
Sbjct: 737 FFCLGNREMVNGNNESGTGSASNENTPQGLCRKSRRFMIYVHSKGMVVDDEYVVIGSANI 796
Query: 722 NQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSL 781
NQRS+EG+RDTEIAMGAYQP +TWA ++S PRGQ+YGYR SLWAEH+ L+D F EP+SL
Sbjct: 797 NQRSMEGTRDTEIAMGAYQPQHTWARRQSGPRGQIYGYRMSLWAEHMALLDDCFVEPESL 856
Query: 782 ECMQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILG 841
C+++V +A ENW+ F + EMRGHLM+YPV++ R+GKV LPG + FPDVGG ++G
Sbjct: 857 GCVRKVRTVAEENWEQFRSEEVSEMRGHLMKYPVEVDRKGKVRPLPGSEEFPDVGGNVVG 916
Query: 842 APTSLPDALT 851
+ ++ + LT
Sbjct: 917 SFLAIQENLT 926
|
|
| TAIR|locus:2137045 PLDGAMMA1 "phospholipase D gamma 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2355 (834.1 bits), Expect = 2.1e-244, P = 2.1e-244
Identities = 450/799 (56%), Positives = 580/799 (72%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFH 123
KK G + S ITS+PYV+V +SGA + +T VISN ENP W +HF VPVAHS + F
Sbjct: 74 KKVEG--EKSSKITSDPYVTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAEVHFV 131
Query: 124 VKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQI 183
VKD+DI+G++++G V IP E++ GN ++ FPI S GK K L +S+QY P+ ++
Sbjct: 132 VKDSDIIGSQIMGAVGIPTEQLCSGNRIEGLFPILNSSGKPCKQGAVLGLSIQYTPMERM 191
Query: 184 PLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWE 243
LY+ GVG+G + GVP TYFPLRK G +TLYQDAHV G LP + LDGG +RHG+CWE
Sbjct: 192 RLYQMGVGSGNECVGVPGTYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWE 251
Query: 244 EICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLI 303
++ A+ +AR LIYI GWSVFHPV+LVR P E + GELLK KSQEGVRVL+L+
Sbjct: 252 DMADAIRQARRLIYITGWSVFHPVRLVRRTNDPT----EGTLGELLKVKSQEGVRVLVLV 307
Query: 304 WDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFT 363
WDD TS L KT+GVM T DEETR+FFKHSSV +L PR S K+ VGT++T
Sbjct: 308 WDDPTSRSLLGFKTQGVMNTSDEETRRFFKHSSVQVLLCPRSGGKGHSFIKKSEVGTIYT 367
Query: 364 HHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSH 423
HHQK VIVD A+ N RKI AF+GGLDLC+GR+DTP+H LF L T+ +DFHNP+ +
Sbjct: 368 HHQKTVIVDAEAAQNRRKIVAFVGGLDLCNGRFDTPKHPLFRTLKTLHKDDFHNPNFVTT 427
Query: 424 AK-GPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREF-RLKKVTHWYDDSLINLDR 481
A GPREPWHD+H K++GPAAYD+L NFE+RW +++K R +LK + DDSL+ +DR
Sbjct: 428 ADDGPREPWHDLHSKIDGPAAYDVLANFEERWMKASKPRGIGKLKSSS---DDSLLRIDR 484
Query: 482 IGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDL 541
I P S + ++ + E+WH+QVFRSIDS SVKGFPKD +EA +NL+C K++
Sbjct: 485 I---PDIVGLS--EASSANDNDPESWHVQVFRSIDSSSVKGFPKDPKEATGRNLLCGKNI 539
Query: 542 KVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKIN 601
+D SIH+AYVKAIRSAQHFIYIENQYF+GSS++W S K+ GA+NLIPME+ALKI +KI
Sbjct: 540 LIDMSIHAAYVKAIRSAQHFIYIENQYFLGSSFNWDSNKDLGANNLIPMEIALKIANKIR 599
Query: 602 ANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDY 661
A E+F+ Y+VIPMWPEG P S +Q ILYWQ +TM MMY+ + +AL + GL +++ PQD+
Sbjct: 600 AREKFAAYIVIPMWPEGAPTSNPIQRILYWQHKTMQMMYQTIYKALVEVGLDSQFEPQDF 659
Query: 662 LSFYCLGKREAP---------PLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDE 712
L+F+CLG RE P P Q N N A A K RRFMIYVH+KGM+VDDE
Sbjct: 660 LNFFCLGTREVPVGTVSVYNSPRKPPQPNANA-NAAQVQALKSRRFMIYVHSKGMVVDDE 718
Query: 713 YVIMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLE 772
+V++GSANINQRSLEG+RDTEIAMG YQPHY+WA K S P GQ++GYR SLWAEHLG LE
Sbjct: 719 FVLIGSANINQRSLEGTRDTEIAMGGYQPHYSWAMKGSRPHGQIFGYRMSLWAEHLGFLE 778
Query: 773 DTFREPQSLECMQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTF 832
F EP+++EC++RV +++ NW+ + + EM GHL++YPVQ+ R GKVS+LPG +TF
Sbjct: 779 QGFEEPENMECVRRVRQLSELNWRQYAAEEVTEMSGHLLKYPVQVDRTGKVSSLPGCETF 838
Query: 833 PDVGGKILGAPTSLPDALT 851
PD+GGKI+G+ +L + LT
Sbjct: 839 PDLGGKIIGSFLALQENLT 857
|
|
| TAIR|locus:2137025 PLDGAMMA2 "phospholipase D gamma 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2332 (826.0 bits), Expect = 5.6e-242, P = 5.6e-242
Identities = 453/840 (53%), Positives = 590/840 (70%)
Query: 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPF--KKTRGLSG-RHSMITSNPY 81
LHG+LD+ + EAK LPNM + G F ++ R + G + S TS+PY
Sbjct: 34 LHGNLDIWVKEAKHLPNMICYRNKL------VGGISFSELGRRIRKVDGEKSSKFTSDPY 87
Query: 82 VSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIP 141
V+V +SGA + +T VISN ENP W +HF VPVAHS + F VKDND +G+++IGVV IP
Sbjct: 88 VTVSISGAVIGRTFVISNSENPVWMQHFDVPVAHSAAEVHFVVKDNDPIGSKIIGVVGIP 147
Query: 142 VEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDYQGVPK 201
+++ GN ++ FPI S GK + L +S+QY P+ ++ LY+ GVG+G + GVP
Sbjct: 148 TKQLCSGNRIEGLFPILNSSGKPCRKGAMLSLSIQYTPMERMRLYQKGVGSGVECVGVPG 207
Query: 202 TYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGW 261
TYFPLRK G +TLYQDAHV G LP + LDGG +RHG+CWE++ A+ AR LIYI GW
Sbjct: 208 TYFPLRKGGRVTLYQDAHVDDGTLPSVHLDGGIQYRHGKCWEDMADAIRRARRLIYITGW 267
Query: 262 SVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVM 321
SVFHPV+LVR P E + GELLK KSQEGVRVL+L+WDD TS T+G+M
Sbjct: 268 SVFHPVRLVRRNNDPT----EGTLGELLKVKSQEGVRVLVLVWDDPTSMSFPGFSTKGLM 323
Query: 322 QTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRK 381
T DEETR+FFKHSSV +L PRY S K+ V T++THHQK +IVD A+ N RK
Sbjct: 324 NTSDEETRRFFKHSSVQVLLCPRYGGKGHSFIKKSEVETIYTHHQKTMIVDAEAAQNRRK 383
Query: 382 ISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPS-LPSHAKGPREPWHDMHCKVEG 440
I AF+GGLDLC+GR+DTP+H LFG L T+ +DFHNP+ + + GPREPWHD+H K++G
Sbjct: 384 IVAFVGGLDLCNGRFDTPKHSLFGTLKTLHKDDFHNPNFVTTEDVGPREPWHDLHSKIDG 443
Query: 441 PAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYKPTRAGS 500
PAAYD+L NFE+RW S K R + + +DDSL+ ++RI P + +
Sbjct: 444 PAAYDVLANFEERWMAS-KPRGIGKGRTS--FDDSLLRINRI---PDI--MGLSEASSAN 495
Query: 501 EKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQH 560
+ + E+WH+QVFRSIDS SVKGFPKD EEA +NL+C K++ +D SIH+AYVKAIRSAQH
Sbjct: 496 DNDPESWHVQVFRSIDSTSVKGFPKDPEEATGRNLLCGKNILIDMSIHAAYVKAIRSAQH 555
Query: 561 FIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNP 620
FIYIENQYF+GSS++W S K+ GA+NLIPME+ALKI +KI A E F+ Y+VIPMWPEG P
Sbjct: 556 FIYIENQYFLGSSFNWDSNKDLGANNLIPMEIALKIANKIRARENFAAYIVIPMWPEGAP 615
Query: 621 NSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREA-----PPL 675
S +Q ILYWQ +TM MMY+ + +AL + GL + PQD+L+F+CLG RE P
Sbjct: 616 TSKPIQRILYWQHKTMQMMYQTIYKALLEVGLDGQLEPQDFLNFFCLGNREVGTREVPDG 675
Query: 676 DRSQMNQQTE----NRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRD 731
+ N + N A A K RRFMIYVH+KGM+VDDE+V++GSANINQRSLEG+RD
Sbjct: 676 TVNVYNCPRKPPQPNAAQVQALKSRRFMIYVHSKGMVVDDEFVLIGSANINQRSLEGTRD 735
Query: 732 TEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVNRIA 791
TEIAMG YQPH++WA K S PRGQ++GYR SLWAEHLG LE F EP+++EC++RV +++
Sbjct: 736 TEIAMGGYQPHHSWAKKGSRPRGQIFGYRMSLWAEHLGFLEQEFEEPENMECVRRVRQLS 795
Query: 792 GENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTSLPDALT 851
NW + + EM GHL++YPVQ+ + GKVS+LPG +TFPD+GGKI+G+ +L + LT
Sbjct: 796 ELNWGQYAAEEVTEMSGHLLKYPVQVDKTGKVSSLPGCETFPDLGGKIIGSFLTLQENLT 855
|
|
| UNIPROTKB|P86387 PLD1 "Phospholipase D alpha 1" [Carica papaya (taxid:3649)] | Back alignment and assigned GO terms |
|---|
Score = 1802 (639.4 bits), Expect = 8.2e-186, P = 8.2e-186
Identities = 368/786 (46%), Positives = 517/786 (65%)
Query: 81 YVSVCLSGATVAQTRVISN-CENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQ 139
Y ++ L A V +TR+I + NP W E F + AH N+ F VKD++ +GA LIG
Sbjct: 50 YATIDLERARVGRTRIIKDEPNNPKWYESFHIYCAHMASNVVFTVKDDNPIGATLIGRAY 109
Query: 140 IPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDYQGV 199
+PVE+++ G++VD W I ++ ++HV +Q+ + + + G+ G Y GV
Sbjct: 110 VPVEELIRGDQVDRWVEILDEDKNPIEGDSKIHVKLQFFDVKKDSNWNMGI-KGARYLGV 168
Query: 200 PKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYII 259
P T++ R+ ++LYQDAHVP G +P+I L GGK + +CWE++ A+ ARHLIYI
Sbjct: 169 PYTFYSQRRGCRVSLYQDAHVPDGFIPKIPLAGGKYYEPHRCWEDVFDAITNARHLIYIT 228
Query: 260 GWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEG 319
GWSV+ + L+R+ +P P G+++ GELLK K+ EGV+VL+L+WDD+TS +K +G
Sbjct: 229 GWSVYTEITLIRDSRRPKPG-GDVTLGELLKQKASEGVKVLMLVWDDRTSVG--LLKKDG 285
Query: 320 VMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPA-SGN 378
+M THDEET +F+++ V+CVL PR + S + + T+FTHHQK V+VD SG
Sbjct: 286 LMATHDEETANYFQNTDVHCVLCPRNPDDGGSFVQGLQISTMFTHHQKIVVVDGEMPSGE 345
Query: 379 N--RKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLP--SHAKG-PREPWHD 433
+ R+I +F+GG+DLCDGRYDTP H LF L+T +DFH P+ S KG PREPWHD
Sbjct: 346 SQMRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFAGSSITKGGPREPWHD 405
Query: 434 MHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSY 493
+H ++EGP A+D+L NFEQRWR+ K V +L LD I I PS
Sbjct: 406 IHSRLEGPVAWDVLFNFEQRWRQQGG------KDVLV----NLRELDNIIIPPS------ 449
Query: 494 KPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVK 553
P + ET W++Q+FRSID G+ GFP+ EEA LV KD +D+SI AY+
Sbjct: 450 -PVMFPDDHET--WNVQLFRSIDGGAAFGFPETPEEAARAGLVSGKDNIIDRSIQDAYIN 506
Query: 554 AIRSAQHFIYIENQYFIGSSYHWPS----YKNAGADNLIPMELALKIVSKINANERFSVY 609
AIR A++FIYIENQYF+GSS+ W S ++ A +LIP EL+LKIVSKI ERF+VY
Sbjct: 507 AIRRAKNFIYIENQYFLGSSFDWSSDDIKREDINALHLIPKELSLKIVSKIERGERFTVY 566
Query: 610 VVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGK 669
VV+PMWPEG P SA+VQ IL WQ +TM MMYK + QAL+ + P++YL+F+CLG
Sbjct: 567 VVVPMWPEGVPESASVQAILDWQRRTMEMMYKDIIQALRAK--DREEDPRNYLTFFCLGN 624
Query: 670 REAPPLDRSQMNQQTENRA-LAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEG 728
RE + +++ E+ + AQ+ RRFMIYVH K MIVDDEY+I+GSANINQRS++G
Sbjct: 625 REVKKSGEYEPSERPEDDSDYIRAQEARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDG 684
Query: 729 SRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVN 788
+RD+EIAMGAYQP++ + + RGQ++G+R +LW EHLG L+DTF EP+++EC+Q+VN
Sbjct: 685 ARDSEIAMGAYQPYHLTINQPA--RGQIHGFRMALWYEHLGMLDDTFLEPENIECVQKVN 742
Query: 789 RIAGENWKAFVCDA-HKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTS-L 846
R+AG+ W + + ++ GHL++YP+ +S EG V+ LPG + FPD ++LGA + L
Sbjct: 743 RVAGKYWDLYASELLEHDLPGHLLRYPIGVSSEGDVTELPGTEFFPDTKARVLGAKSDYL 802
Query: 847 PDALTT 852
P LTT
Sbjct: 803 PPILTT 808
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| TAIR|locus:2125314 PLDDELTA "phospholipase D delta" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1788 (634.5 bits), Expect = 2.5e-184, P = 2.5e-184
Identities = 336/534 (62%), Positives = 410/534 (76%)
Query: 333 KHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLC 392
+++S L + AS SI+ VVGTLFTHHQKCV+VDT A GNNRK++AFIGGLDLC
Sbjct: 341 RYASSKLGLFKQQASPSSSIYIMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLC 400
Query: 393 DGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQ 452
DGRYDTPEHR+ DL+TVF +DFHNP+ P+ K PR+PWHD+HC+++GPAAYD+LINFEQ
Sbjct: 401 DGRYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQ 460
Query: 453 RWRRSTKWREF--RLKKVTHWYDDSLINLDRIG--ITP---------STGPHSYKPTRAG 499
RWR++T+W+EF RLK THW DD+LI + RI ++P S P
Sbjct: 461 RWRKATRWKEFSLRLKGKTHWQDDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVS 520
Query: 500 SEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQ 559
E + ENWH+Q+FRSIDSGSVKGFPK +EA AQ+L CAK L VDKSI +AY++ IRSAQ
Sbjct: 521 KEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQ 580
Query: 560 HFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGN 619
HFIYIENQYF+GSSY WPSY++AGADNLIPMELALKIVSKI A ERF+VYVVIP+WPEG+
Sbjct: 581 HFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGD 640
Query: 620 PNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQ 679
P S VQEILYWQ QTM MMY ++A+ L+ + + HP DYL+FYCLGKRE P D
Sbjct: 641 PKSGPVQEILYWQSQTMQMMYDVIAKELK--AVQSDAHPLDYLNFYCLGKREQLPDDMPA 698
Query: 680 MNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAY 739
N ++ + F+RFMIYVHAKGMIVDDEYV+MGSANINQRS+ G++DTEIAMGAY
Sbjct: 699 TN----GSVVSDSYNFQRFMIYVHAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAY 754
Query: 740 QPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVNRIAGENWKAFV 799
QP++TWA K HPRGQVYGYR SLWAEHLG D F EP LEC+++VN I+ ENWK F+
Sbjct: 755 QPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSDLECLKKVNTISEENWKRFI 814
Query: 800 CDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPT-SLPDALTT 852
E++GHL++YP+Q+ +GKVS LP Y+TFPDVGGKI+GA + +LPD LTT
Sbjct: 815 DPKFSELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868
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| TAIR|locus:2093227 PLDALPHA1 "phospholipase D alpha 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1779 (631.3 bits), Expect = 2.2e-183, P = 2.2e-183
Identities = 364/787 (46%), Positives = 515/787 (65%)
Query: 81 YVSVCLSGATVAQTRVISN-CENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQ 139
Y ++ L A V +TR I N +NP W E F + AH ++ F VKD++ +GA LIG
Sbjct: 51 YATIDLQKARVGRTRKIKNEPKNPKWYESFHIYCAHLASDIIFTVKDDNPIGATLIGRAY 110
Query: 140 IPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDYQGV 199
IPV++++ G EVD W I + ++ ++HV +QY + + + G+ + + GV
Sbjct: 111 IPVDQVINGEEVDQWVEILDNDRNPIQGGSKIHVKLQYFHVEEDRNWNMGIKSAK-FPGV 169
Query: 200 PKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYII 259
P T+F R+ ++LYQDAH+P +P I L GGK + +CWE+I A+ A+HLIYI
Sbjct: 170 PYTFFSQRQGCKVSLYQDAHIPDNFVPRIPLAGGKNYEPQRCWEDIFDAISNAKHLIYIT 229
Query: 260 GWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEG 319
GWSV+ + LVR+ +P P G+++ GELLK K+ EGVRVLLL+WDD+TS D L K +G
Sbjct: 230 GWSVYAEIALVRDSRRPKPG-GDVTIGELLKKKASEGVRVLLLVWDDRTSVDVL--KKDG 286
Query: 320 VMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDT--PASG 377
+M THDEET FF+ S V+C+L PR + SI + + T+FTHHQK V+VD+ P+ G
Sbjct: 287 LMATHDEETENFFRGSDVHCILCPRNPDDGGSIVQSLQISTMFTHHQKIVVVDSEMPSRG 346
Query: 378 NN--RKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHA--KG-PREPWH 432
+ R+I +F+GG+DLCDGRYDTP H LF L+TV +DFH P+ A KG PREPWH
Sbjct: 347 GSEMRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTVHHDDFHQPNFTGAAITKGGPREPWH 406
Query: 433 DMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHS 492
D+H ++EGP A+D++ NFEQRW + ++ +K L +L I ITPS P
Sbjct: 407 DIHSRLEGPIAWDVMYNFEQRWSKQGG-KDILVK---------LRDLSDIIITPS--PVM 454
Query: 493 YKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYV 552
+ +++ + W++Q+FRSID G+ GFP+ E A LV KD +D+SI AY+
Sbjct: 455 F-------QEDHDVWNVQLFRSIDGGAAAGFPESPEAAAEAGLVSGKDNIIDRSIQDAYI 507
Query: 553 KAIRSAQHFIYIENQYFIGSSYHWPSY----KNAGADNLIPMELALKIVSKINANERFSV 608
AIR A+ FIY+ENQYF+GSS+ W + ++ A +LIP EL+LKIVSKI E+F V
Sbjct: 508 HAIRRAKDFIYVENQYFLGSSFAWAADGITPEDINALHLIPKELSLKIVSKIEKGEKFRV 567
Query: 609 YVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLG 668
YVV+PMWPEG P S +VQ IL WQ +TM MMYK V QAL+ GL P++YL+F+CLG
Sbjct: 568 YVVVPMWPEGLPESGSVQAILDWQRRTMEMMYKDVIQALRAQGLEED--PRNYLTFFCLG 625
Query: 669 KREAPPLDRSQMNQQTE-NRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLE 727
RE + ++ + + AQ+ RRFMIYVH K MIVDDEY+I+GSANINQRS++
Sbjct: 626 NREVKKDGEYEPAEKPDPDTDYMRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMD 685
Query: 728 GSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRV 787
G+RD+EIAMG YQPH+ + + RGQ++G+R SLW EHLG L++TF +P SLEC+++V
Sbjct: 686 GARDSEIAMGGYQPHHL--SHRQPARGQIHGFRMSLWYEHLGMLDETFLDPSSLECIEKV 743
Query: 788 NRIAGENWKAFVCDA-HKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTS- 845
NRI+ + W + ++ ++ GHL++YP+ ++ EG ++ LPG++ FPD +ILG +
Sbjct: 744 NRISDKYWDFYSSESLEHDLPGHLLRYPIGVASEGDITELPGFEFFPDTKARILGTKSDY 803
Query: 846 LPDALTT 852
LP LTT
Sbjct: 804 LPPILTT 810
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| TAIR|locus:2035211 PLDALPHA2 "phospholipase D alpha 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1776 (630.2 bits), Expect = 4.7e-183, P = 4.7e-183
Identities = 364/786 (46%), Positives = 507/786 (64%)
Query: 81 YVSVCLSGATVAQTRVISN-CENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQ 139
Y ++ L A V +TR I+ +NP W E F + H ++ F VKD + +GA LIG
Sbjct: 51 YATIDLEKARVGRTRKITKEPKNPKWFESFHIYCGHMAKHVIFTVKDANPIGATLIGRGY 110
Query: 140 IPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDYQGV 199
IPVE IL G EVD W I + + ++HV +QY + + + G+ + + GV
Sbjct: 111 IPVEDILHGEEVDRWVDILDNEKNPIAGGSKIHVKLQYFGVEKDKNWNRGIKSAK-FPGV 169
Query: 200 PKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYII 259
P T+F R+ ++LYQDAH+P +P+I L GGK + +CWE+I A+ A+HLIYI
Sbjct: 170 PYTFFSQRRGCKVSLYQDAHIPGNFVPKIPLAGGKNYEPHRCWEDIFDAITNAKHLIYIT 229
Query: 260 GWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEG 319
GWSV+ + LVR+ +P G+++ GELLK K+ EGV+V+LL+WDD+TS D +K +G
Sbjct: 230 GWSVYTEISLVRDSRRPKQG-GDVTVGELLKKKASEGVKVILLVWDDRTSVD--LLKKDG 286
Query: 320 VMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDT--PASG 377
+M THDEET FF+ + VNC+L PR + SI + + T+FTHHQK V+VD+ P+ G
Sbjct: 287 LMATHDEETENFFRGTDVNCILCPRNPDDGGSIVQNLQISTMFTHHQKIVVVDSEMPSGG 346
Query: 378 N-NRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHA---KGPREPWHD 433
+ +R+I +F+GGLDLCDGRYDTP H LF L+T +DFH P+ A GPREPWHD
Sbjct: 347 SRSRRIVSFVGGLDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGAAITKGGPREPWHD 406
Query: 434 MHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSY 493
+HC++EGP A+D+L NFEQRW R ++ +K + L I I PS
Sbjct: 407 IHCRLEGPIAWDVLYNFEQRWSRQGG-KDILVK---------MRELGDIIIPPS------ 450
Query: 494 KPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVK 553
P + + W++Q+FRSID G+ GFP E A LV KD +D+SI AY+
Sbjct: 451 -PVLFSEDHDV--WNVQLFRSIDGGAAAGFPDSPEAAAEAGLVSGKDNIIDRSIQDAYIH 507
Query: 554 AIRSAQHFIYIENQYFIGSSYHWPSY----KNAGADNLIPMELALKIVSKINANERFSVY 609
AIR A+ FIYIENQYF+GSS+ W + + A +LIP EL+LKIVSKI A E+F VY
Sbjct: 508 AIRRAKDFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIKAGEKFKVY 567
Query: 610 VVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGK 669
VV+PMWPEG P S +VQ IL WQ +TM MMYK V +AL++NGL + P+DYL+F+CLG
Sbjct: 568 VVVPMWPEGIPESGSVQAILDWQKRTMEMMYKDVIKALRENGLEGE-DPRDYLTFFCLGN 626
Query: 670 REAPPLDRSQMNQQTE-NRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEG 728
RE + +++ E + AQ+ RRFMIYVH K MIVDDEY+I+GSANINQRS++G
Sbjct: 627 REVKKDGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDG 686
Query: 729 SRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVN 788
+RD+EIAMG YQP++ + + RGQ++G+R SLW EHLG L++TF +P S EC+Q+VN
Sbjct: 687 ARDSEIAMGGYQPYHL--STRQPARGQIHGFRMSLWYEHLGMLDETFLDPSSQECIQKVN 744
Query: 789 RIAGENWKAFVCDA-HKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTS-L 846
R+A + W + ++ ++ GHL++YP+ I+ EG ++ LPG + FPD +ILG + +
Sbjct: 745 RVADKYWDLYSSESLEHDLPGHLLRYPIGIASEGNITELPGCEFFPDTKARILGVKSDYM 804
Query: 847 PDALTT 852
P LTT
Sbjct: 805 PPILTT 810
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| TAIR|locus:2145452 PLDALPHA3 "phospholipase D alpha 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1738 (616.9 bits), Expect = 5.0e-179, P = 5.0e-179
Identities = 359/766 (46%), Positives = 491/766 (64%)
Query: 102 NPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSY 161
+P W + F V AHS+ + F VK+++ + A LIG +PV +++ G +D W I
Sbjct: 80 HPKWLQSFHVYTAHSISKIIFTVKEDEPVSASLIGRAYLPVTEVITGQPIDRWLDILDEN 139
Query: 162 GKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVP 221
+ ++ +LHV +++ + Q + G+ P + GVP YF R+ +TLYQDAHV
Sbjct: 140 RRPIQGGSKLHVRVKFTHVTQDVNWNKGIIL-PSFNGVPNAYFNQREGCKVTLYQDAHVL 198
Query: 222 PGMLPEIALDGGKT-FRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSF 280
P++ L GG+ ++H +CWEEI A+ EA+HLIYI GWSV V LVR+P + P
Sbjct: 199 -NEYPDVTLTGGQVIYKHHRCWEEIFDAIWEAKHLIYIAGWSVNTDVTLVRDPKRTRPG- 256
Query: 281 GELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCV 340
G+L GELLK K++E V VL+L+WDD+TSH+ +F K +G+M THD+ET +FK++ V CV
Sbjct: 257 GDLKLGELLKKKAEENVTVLMLVWDDRTSHE-VF-KRDGLMMTHDQETYDYFKNTKVRCV 314
Query: 341 LAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGN--NRKISAFIGGLDLCDGRYDT 398
L PR N SI + V T+FTHHQK ++VD+ G+ R+I +F+GG+DLCDGRYDT
Sbjct: 315 LCPRNPDNGDSIVQGFEVATMFTHHQKTIVVDSEVDGSLTKRRIVSFLGGIDLCDGRYDT 374
Query: 399 PEHRLFGDLNTVFANDFHNPSLP--SHAKG-PREPWHDMHCKVEGPAAYDILINFEQRWR 455
EH LFG LN+V ANDFH P+ S KG PREPWHD+HCK++GPAA+D+L NFEQRW
Sbjct: 375 VEHPLFGTLNSVHANDFHQPNFDGASIKKGGPREPWHDIHCKLDGPAAWDVLYNFEQRWM 434
Query: 456 RSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSI 515
+ R + + S+ L I + P P +P + E E W +QVFRSI
Sbjct: 435 KQGSGRRYLI---------SMAQLAEITVPPL--P-IVQP-----DNE-EGWTVQVFRSI 476
Query: 516 DSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYH 575
D G+V+GFP+D EA + L+ KD +++SI AYV AIR A++FIYIENQYF+GSS+
Sbjct: 477 DDGAVEGFPEDPREAASIGLISGKDNVIERSIQDAYVNAIRRAKNFIYIENQYFLGSSFG 536
Query: 576 WPS----YKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYW 631
W S A LIP E++LKIVSKI A ERFSVY+VIP+WPEG P SA+VQ IL W
Sbjct: 537 WNSRDINLNEINALQLIPKEISLKIVSKIEAGERFSVYIVIPLWPEGKPGSASVQAILDW 596
Query: 632 QGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTE-NRALA 690
Q +TM MMY + AL+ GL +P+DYL+F+CLG RE + ++ E N A
Sbjct: 597 QRRTMEMMYTDIIIALRKKGLDA--NPRDYLTFFCLGNREKGKVGEYLPPEKPEANSDYA 654
Query: 691 AAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAKKS 750
AQ+ RRFMIYVH+K MIVDDEY+I+GSANINQRS++G RDTEIAMGAYQP + +
Sbjct: 655 RAQESRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAYQPSHLLSTNNM 714
Query: 751 HPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVNRIAGENWKAFVCDAHK---EMR 807
P GQ++ +R SLW EHL + F+ P+S EC++ VN A E W + + ++
Sbjct: 715 RPVGQIFSFRISLWLEHLRVTTNAFQCPESEECIRMVNATADELWGLYSAQEYPRNDDLP 774
Query: 808 GHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPTS-LPDALTT 852
GHL+ YP+ I G+V+ L G + FPD K++G ++ LP LT+
Sbjct: 775 GHLLSYPISIGSNGEVTNLAGTEFFPDTNAKVVGEKSNYLPPILTS 820
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C5Y0 | PLDD1_ARATH | 3, ., 1, ., 4, ., 4 | 0.5848 | 0.9706 | 0.9527 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.4.4 | 0.946 |
| 3rd Layer | 3.1.4 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00035483001 | SubName- Full=Chromosome chr12 scaffold_78, whole genome shotgun sequence; (856 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 852 | |||
| PLN03008 | 868 | PLN03008, PLN03008, Phospholipase D delta | 0.0 | |
| PLN02270 | 808 | PLN02270, PLN02270, phospholipase D alpha | 0.0 | |
| PLN02352 | 758 | PLN02352, PLN02352, phospholipase D epsilon | 0.0 | |
| cd09200 | 211 | cd09200, PLDc_pPLDbeta_2, Catalytic domain, repeat | 1e-122 | |
| cd09142 | 208 | cd09142, PLDc_pPLD_like_2, Catalytic domain, repea | 1e-109 | |
| cd09198 | 180 | cd09198, PLDc_pPLDbeta_1, Catalytic domain, repeat | 1e-105 | |
| cd09199 | 211 | cd09199, PLDc_pPLDalpha_2, Catalytic domain, repea | 5e-85 | |
| cd09139 | 176 | cd09139, PLDc_pPLD_like_1, Catalytic domain, repea | 7e-75 | |
| cd09197 | 178 | cd09197, PLDc_pPLDalpha_1, Catalytic domain, repea | 9e-66 | |
| cd04015 | 158 | cd04015, C2_plant_PLD, C2 domain present in plant | 7e-62 | |
| cd09141 | 183 | cd09141, PLDc_vPLD1_2_yPLD_like_2, Catalytic domai | 4e-50 | |
| pfam12357 | 74 | pfam12357, PLD_C, Phospholipase D C terminal | 1e-35 | |
| cd09105 | 146 | cd09105, PLDc_vPLD1_2_like_2, Catalytic domain, re | 2e-32 | |
| PLN02866 | 1068 | PLN02866, PLN02866, phospholipase D | 7e-32 | |
| cd09844 | 182 | cd09844, PLDc_vPLD1_2, Catalytic domain, repeat 2, | 2e-27 | |
| cd09104 | 147 | cd09104, PLDc_vPLD1_2_like_1, Catalytic domain, re | 5e-26 | |
| cd09845 | 182 | cd09845, PLDc_vPLD2_2, Catalytic domain, repeat 2, | 6e-23 | |
| PLN02866 | 1068 | PLN02866, PLN02866, phospholipase D | 3e-20 | |
| cd09138 | 146 | cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domai | 3e-18 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-17 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 2e-16 | |
| cd09140 | 146 | cd09140, PLDc_vPLD1_2_like_bac_1, Catalytic domain | 2e-13 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 1e-12 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 3e-10 | |
| cd09143 | 142 | cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain | 3e-10 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 4e-10 | |
| cd09842 | 151 | cd09842, PLDc_vPLD1_1, Catalytic domain, repeat 1, | 1e-09 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 5e-09 | |
| COG1502 | 438 | COG1502, Cls, Phosphatidylserine/phosphatidylglyce | 6e-09 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 9e-08 | |
| COG1502 | 438 | COG1502, Cls, Phosphatidylserine/phosphatidylglyce | 6e-07 | |
| cd09843 | 145 | cd09843, PLDc_vPLD2_1, Catalytic domain, repeat 1, | 6e-07 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 1e-06 | |
| cd09128 | 142 | cd09128, PLDc_unchar1_2, Putative catalytic domain | 1e-06 | |
| smart00155 | 28 | smart00155, PLDc, Phospholipase D | 2e-06 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 3e-06 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 3e-06 | |
| cd09110 | 154 | cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, o | 4e-06 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 4e-06 | |
| pfam13091 | 129 | pfam13091, PLDc_2, PLD-like domain | 8e-06 | |
| cd09143 | 142 | cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain | 1e-05 | |
| cd00138 | 119 | cd00138, PLDc_SF, Catalytic domain of phospholipas | 2e-05 | |
| cd09112 | 174 | cd09112, PLDc_CLS_2, catalytic domain repeat 2 of | 2e-05 | |
| pfam00614 | 28 | pfam00614, PLDc, Phospholipase D Active site motif | 3e-05 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 3e-05 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 4e-05 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 4e-05 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 7e-05 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 7e-05 | |
| cd09162 | 172 | cd09162, PLDc_CLS_unchar1_2, Putative catalytic do | 7e-05 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 1e-04 | |
| cd08401 | 121 | cd08401, C2A_RasA2_RasA3, C2 domain first repeat p | 2e-04 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 2e-04 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 3e-04 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 4e-04 | |
| cd09159 | 170 | cd09159, PLDc_ybhO_like_2, Catalytic domain, repea | 5e-04 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 5e-04 | |
| cd04021 | 125 | cd04021, C2_E3_ubiquitin_ligase, C2 domain present | 5e-04 | |
| PRK01642 | 483 | PRK01642, cls, cardiolipin synthetase; Reviewed | 5e-04 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 7e-04 | |
| cd09112 | 174 | cd09112, PLDc_CLS_2, catalytic domain repeat 2 of | 0.001 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 0.001 | |
| cd09163 | 176 | cd09163, PLDc_CLS_unchar2_2, Putative catalytic do | 0.001 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 0.001 | |
| cd04014 | 132 | cd04014, C2_PKC_epsilon, C2 domain in Protein Kina | 0.001 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.002 | |
| cd08678 | 126 | cd08678, C2_C21orf25-like, C2 domain found in the | 0.002 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 0.002 | |
| cd09113 | 218 | cd09113, PLDc_ymdC_like_2, Putative catalytic doma | 0.002 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 0.002 | |
| cd04016 | 121 | cd04016, C2_Tollip, C2 domain present in Toll-inte | 0.003 |
| >gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta | Back alignment and domain information |
|---|
Score = 1077 bits (2787), Expect = 0.0
Identities = 510/871 (58%), Positives = 638/871 (73%), Gaps = 45/871 (5%)
Query: 19 SDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKT------------ 66
S++ + LHGDLDL I++A+ LPNMD+ +E +R+ C C P
Sbjct: 6 SEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGD 65
Query: 67 RGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKD 126
+ + +ITS+PYV+V + AT+A+TRV+ N + P WDE F + +AH LEF VKD
Sbjct: 66 KNIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKD 125
Query: 127 NDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLY 186
+D+ GA++IG +IPV I G + WFP+ G+ GK K + + M++ P QI Y
Sbjct: 126 DDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSY 185
Query: 187 KDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEIC 246
+ G+ P+ +GV +TYFP+RK + LYQDAHV G LP I LD GK + HG+CWE+IC
Sbjct: 186 RCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDIC 245
Query: 247 HAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDD 306
+A+ EA H+IYI+GWS+FH +KLVRE TK +P +++ GELLK+KSQEGVRVLLL+WDD
Sbjct: 246 YAISEAHHMIYIVGWSIFHKIKLVRE-TK-VPRDKDMTLGELLKYKSQEGVRVLLLVWDD 303
Query: 307 KTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQ---------- 356
KTSHD IKT GVM THDEETRKFFKHSSV CVL+PRYAS+KL +FKQQ
Sbjct: 304 KTSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVM 363
Query: 357 -VVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDF 415
VVGTLFTHHQKCV+VDT A GNNRK++AFIGGLDLCDGRYDTPEHR+ DL+TVF +DF
Sbjct: 364 TVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDDF 423
Query: 416 HNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREF--RLKKVTHWYD 473
HNP+ P+ K PR+PWHD+HC+++GPAAYD+LINFEQRWR++T+W+EF RLK THW D
Sbjct: 424 HNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQD 483
Query: 474 DSLINLDRIG--ITP---------STGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKG 522
D+LI + RI ++P S P E + ENWH+Q+FRSIDSGSVKG
Sbjct: 484 DALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKG 543
Query: 523 FPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNA 582
FPK +EA AQ+L CAK L VDKSI +AY++ IRSAQHFIYIENQYF+GSSY WPSY++A
Sbjct: 544 FPKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDA 603
Query: 583 GADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKI 642
GADNLIPMELALKIVSKI A ERF+VYVVIP+WPEG+P S VQEILYWQ QTM MMY +
Sbjct: 604 GADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPKSGPVQEILYWQSQTMQMMYDV 663
Query: 643 VAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYV 702
+A+ L+ + + HP DYL+FYCLGKRE P D N ++ + F+RFMIYV
Sbjct: 664 IAKELK--AVQSDAHPLDYLNFYCLGKREQLPDDMPATN----GSVVSDSYNFQRFMIYV 717
Query: 703 HAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTS 762
HAKGMIVDDEYV+MGSANINQRS+ G++DTEIAMGAYQP++TWA K HPRGQVYGYR S
Sbjct: 718 HAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMS 777
Query: 763 LWAEHLGTLEDTFREPQSLECMQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGK 822
LWAEHLG D F EP LEC+++VN I+ ENWK F+ E++GHL++YP+Q+ +GK
Sbjct: 778 LWAEHLGKTGDEFVEPSDLECLKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDGK 837
Query: 823 VSTLPGYDTFPDVGGKILGAPT-SLPDALTT 852
VS LP Y+TFPDVGGKI+GA + +LPD LTT
Sbjct: 838 VSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868
|
Length = 868 |
| >gnl|CDD|165912 PLN02270, PLN02270, phospholipase D alpha | Back alignment and domain information |
|---|
Score = 757 bits (1956), Expect = 0.0
Identities = 364/790 (46%), Positives = 511/790 (64%), Gaps = 41/790 (5%)
Query: 77 TSNPYVSVCLSGATVAQTRVISN-CENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELI 135
S Y ++ L A V +TR I N +NP W E F + AH N+ F VKD++ +GA LI
Sbjct: 46 ESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLI 105
Query: 136 GVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPD 195
G IPVE+IL G EVD W I + + ++HV +QY + + + G+
Sbjct: 106 GRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNWGRGI-RSAK 164
Query: 196 YQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHL 255
+ GVP T+F R+ ++LYQDAH+P +P+I L GGK + +CWE++ A+ A+HL
Sbjct: 165 FPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHL 224
Query: 256 IYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFI 315
IYI GWSV+ + LVR+ +P P G+++ GELLK K+ EGVRVLLL+WDD+TS D +
Sbjct: 225 IYITGWSVYTEISLVRDSRRPKPG-GDVTIGELLKKKASEGVRVLLLVWDDRTSVD--LL 281
Query: 316 KTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDT-- 373
K +G+M THDEET FF+ + V+C+L PR + SI + + T+FTHHQK V+VD+
Sbjct: 282 KKDGLMATHDEETENFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEM 341
Query: 374 PASGNN-RKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHA---KGPRE 429
P G+ R+I +F+GG+DLCDGRYDTP H LF L+T +DFH P+ + GPRE
Sbjct: 342 PNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGASITKGGPRE 401
Query: 430 PWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTG 489
PWHD+H ++EGP A+D+L NFEQRW + ++ ++ L L+ + I PS
Sbjct: 402 PWHDIHSRLEGPIAWDVLFNFEQRWSKQGG-KDILVQ---------LRELEDVIIPPS-- 449
Query: 490 PHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHS 549
P + + E W++Q+FRSID G+ GFP+ E A LV KD +D+SI
Sbjct: 450 PVMF-------PDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQD 502
Query: 550 AYVKAIRSAQHFIYIENQYFIGSSYHWPS----YKNAGADNLIPMELALKIVSKINANER 605
AY+ AIR A+ FIYIENQYF+GSS+ W + ++ A +LIP EL+LKIVSKI A E+
Sbjct: 503 AYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEK 562
Query: 606 FSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFY 665
F+VYVV+PMWPEG P S +VQ IL WQ +TM MMYK V QAL+ GL P++YL+F+
Sbjct: 563 FTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEED--PRNYLTFF 620
Query: 666 CLGKREAPPLDRSQMNQQTE-NRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQR 724
CLG RE + +++ E + AQ+ RRFMIYVH K MIVDDEY+I+GSANINQR
Sbjct: 621 CLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQR 680
Query: 725 SLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECM 784
S++G+RD+EIAMG YQP++ + + RGQ++G+R SLW EHLG L++TF +P+S EC+
Sbjct: 681 SMDGARDSEIAMGGYQPYHL--STRQPARGQIHGFRMSLWYEHLGMLDETFLDPESEECI 738
Query: 785 QRVNRIAGENWKAFVCDA-HKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAP 843
Q+VN+IA + W + + ++ GHL++YP+ ++ EG ++ LPG + FPD ++LGA
Sbjct: 739 QKVNQIADKYWDLYSSETLEHDLPGHLLRYPIGVASEGDITELPGTEFFPDTKARVLGAK 798
Query: 844 TS-LPDALTT 852
+ LP LTT
Sbjct: 799 SDYLPPILTT 808
|
Length = 808 |
| >gnl|CDD|215202 PLN02352, PLN02352, phospholipase D epsilon | Back alignment and domain information |
|---|
Score = 591 bits (1524), Expect = 0.0
Identities = 311/792 (39%), Positives = 436/792 (55%), Gaps = 92/792 (11%)
Query: 81 YVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAH---SVVNLEFHVKDNDILGAELIGV 137
YV++ + VA+T S+ + W++ F + AH S + + K ++G
Sbjct: 39 YVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK------CSILGR 89
Query: 138 VQIPVEKILCGNE-VDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDY 196
I +I+ ++ +FP+ GK P +L + ++P P + + G +
Sbjct: 90 FHIQAHQIVTEASFINGFFPLIMENGKP-NPELKLRFMLWFRPAELEPTWCKILENG-SF 147
Query: 197 QGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLI 256
QG+ FP R ++ LYQDAH P + L G + WE++ A+ A+HLI
Sbjct: 148 QGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDLCGSPR----KLWEDVYKAIEGAKHLI 203
Query: 257 YIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIK 316
YI GWS + LVR+P +P + GELLK K++EGV V +++WDD+TS IK
Sbjct: 204 YIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLP--IIK 261
Query: 317 TEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPA- 375
+GVM THDE+ +FKH+ V C L PR K TLF HHQK + VDT A
Sbjct: 262 NKGVMGTHDEDAFAYFKHTKVVCKLCPRL-HKKFP--------TLFAHHQKTITVDTRAN 312
Query: 376 -SGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNT-VFANDFHNPSLPS---HAKGPREP 430
S + R+I +F+GGLDLCDGRYDT EH LF LNT DF+ S+ GPREP
Sbjct: 313 DSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQTSIAGAKLQKGGPREP 372
Query: 431 WHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGP 490
WHD H + G AA+D+L NFEQRW + + S++ P++
Sbjct: 373 WHDAHACIVGEAAWDVLTNFEQRWTKQC--------------NPSVL-------VPTSSI 411
Query: 491 HSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSA 550
+ SE NW +QV+RSID S P++ L V++SIH A
Sbjct: 412 RNLVHQPGSSESNNRNWKVQVYRSIDHVSASHMPRN--------------LPVERSIHEA 457
Query: 551 YVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYV 610
YV+AIR A+ FIYIENQYFIG + W + G NLIP+E+ALKI SKI A ERF+VY+
Sbjct: 458 YVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYI 517
Query: 611 VIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKR 670
+IPMWPEG P S VQ+IL+W +TM+MMYK++ +A+Q++G HP+DYL+F+CL R
Sbjct: 518 LIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQESG--EPGHPRDYLNFFCLANR 575
Query: 671 E-------APPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQ 723
E PP Q Q AQK RRFM+YVH+K MIVDD Y+++GSAN+NQ
Sbjct: 576 EEKRKGEFVPPYSPHQKTQYWN------AQKNRRFMVYVHSKLMIVDDTYILIGSANVNQ 629
Query: 724 RSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLEC 783
RS++G RDTEIA+G YQ ++ + YR SLW EH G E++F EP+SLEC
Sbjct: 630 RSMDGCRDTEIAIGCYQSK---NGTNTNNPRDIQAYRMSLWYEHTGLDEESFLEPESLEC 686
Query: 784 MQRVNRIAGENWKAFVCDAHKEMRG-HLMQYPVQISREGKVSTL-PGYDTFPDVGGKILG 841
++R+ I + W+ + + +M G HL+ YP+ ++++G V L G FPD + G
Sbjct: 687 VRRLRTIGEQMWEIYSGEEVVDMEGVHLVNYPISVTKDGAVEDLADGDGNFPDTKTPVKG 746
Query: 842 APTS-LPDALTT 852
+ LP TT
Sbjct: 747 RRSKMLPPVFTT 758
|
Length = 758 |
| >gnl|CDD|197296 cd09200, PLDc_pPLDbeta_2, Catalytic domain, repeat 2, of plant beta-type phospholipase D | Back alignment and domain information |
|---|
Score = 367 bits (944), Expect = e-122
Identities = 151/211 (71%), Positives = 175/211 (82%), Gaps = 1/211 (0%)
Query: 539 KDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVS 598
K++ +D SIH+AYVKAIRSAQHFIYIENQYFIGSSY+WP+YK+AGADNLIPME+ALKI
Sbjct: 1 KNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWPAYKDAGADNLIPMEIALKIAE 60
Query: 599 KINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHP 658
KI A ERF+VY+VIPMWPEG P AAVQEILYWQ QTM MMY+ +A+AL D GL + P
Sbjct: 61 KIRAGERFAVYIVIPMWPEGVPTGAAVQEILYWQHQTMQMMYETIAKALVDTGLEGAFSP 120
Query: 659 QDYLSFYCLGKREAPP-LDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMG 717
QDYL+FYCLG RE ++ S N +N +QK RRFMIYVH+KGMIVDDEYVI+G
Sbjct: 121 QDYLNFYCLGNREMKDGIEPSPTNSPRQNSTQGRSQKSRRFMIYVHSKGMIVDDEYVIIG 180
Query: 718 SANINQRSLEGSRDTEIAMGAYQPHYTWAAK 748
SANINQRS++GSRDTEIAMGAYQPH+TWA K
Sbjct: 181 SANINQRSMDGSRDTEIAMGAYQPHHTWARK 211
|
Catalytic domain, repeat 2, of plant beta-type phospholipase D (PLDbeta, EC 3.1.4.4). Plant PLDbeta is a phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and requires nanomolar calcium and cytosolic factors for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Sequence analysis shows that plant PLDbeta is evolutionarily divergent from alpha-type plant PLD, and plant PLDbeta is more closely related to mammalian and yeast PLDs than to plant PLDalpha. Like other PLD enzymes, the monomer of plant PLDbeta consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDbeta may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 211 |
| >gnl|CDD|197240 cd09142, PLDc_pPLD_like_2, Catalytic domain, repeat 2, of plant phospholipase D and similar proteins | Back alignment and domain information |
|---|
Score = 332 bits (852), Expect = e-109
Identities = 123/209 (58%), Positives = 148/209 (70%), Gaps = 3/209 (1%)
Query: 539 KDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHW-PSYKNAGADNLIPMELALKIV 597
K +D+SI AYV AIR A+ FIYIENQYF+GSS+ W ++ G NLIP ELALKI
Sbjct: 1 KGRTIDRSIQDAYVHAIRRAKRFIYIENQYFLGSSFMWSNRDRDIGCANLIPAELALKIA 60
Query: 598 SKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYH 657
KI A ERF+VY+VIPMWPEG P S +VQEILYWQ T+ MMYKI+ +A+Q GL H
Sbjct: 61 EKIRARERFAVYIVIPMWPEGIPESESVQEILYWQRLTIEMMYKIIGKAIQATGLF-SEH 119
Query: 658 PQDYLSFYCLGKREAP-PLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIM 716
P DYL+F+CLG RE + T+ QK RRFMIYVH+K MIVDDEY+I+
Sbjct: 120 PTDYLNFFCLGNREEVEGGEYEATETPTQGTDYYRLQKNRRFMIYVHSKMMIVDDEYIII 179
Query: 717 GSANINQRSLEGSRDTEIAMGAYQPHYTW 745
GSANINQRS++G RD+EIAMGAYQP +
Sbjct: 180 GSANINQRSMDGCRDSEIAMGAYQPDHLA 208
|
Catalytic domain, repeat 2, of plant phospholipase D (PLD, EC 3.1.4.4) and similar proteins. Plant PLDs have broad substrate specificity and can hydrolyze the terminal phosphodiester bond of several common membrane phospholipids such as phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), and phosphatidylserine (PS), with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Most plant PLDs possess a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require calcium for activity, which is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDs may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. This subfamily includes two types of plant PLDs, alpha-type and beta-type PLDs, which are derived from different gene products and distinctly regulated. The zeta-type PLD from Arabidopsis is not included in this subfamily. Length = 208 |
| >gnl|CDD|197294 cd09198, PLDc_pPLDbeta_1, Catalytic domain, repeat 1, of plant beta-type phospholipase D | Back alignment and domain information |
|---|
Score = 322 bits (826), Expect = e-105
Identities = 128/180 (71%), Positives = 147/180 (81%)
Query: 232 GGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKH 291
GGK + HG+CWE++C A+ EAR LIYI GWSV+H VKL+R+ +P+P GEL+ GELLK
Sbjct: 1 GGKVYEHGKCWEDMCDAIREARRLIYITGWSVYHKVKLIRDKLRPVPPGGELTLGELLKS 60
Query: 292 KSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLS 351
KSQEGVRVLLL+WDDKTSH L KT+GVM THDEET++FFKHSSV CVLAPRYA K S
Sbjct: 61 KSQEGVRVLLLVWDDKTSHSILGYKTDGVMATHDEETKRFFKHSSVQCVLAPRYAGKKHS 120
Query: 352 IFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVF 411
FKQQVVGTL+THHQK VIVD A GN RKI+AFIGGLDLCDGRYDTP+H LF L T+
Sbjct: 121 WFKQQVVGTLYTHHQKNVIVDADAGGNRRKITAFIGGLDLCDGRYDTPQHPLFRTLETIH 180
|
Catalytic domain, repeat 1, of plant beta-type phospholipase D (PLDbeta, EC 3.1.4.4). Plant PLDbeta is a phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and requires nanomolar calcium and cytosolic factors for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Sequence analysis shows that plant PLDbeta is evolutionarily divergent from alpha-type plant PLD, and plant PLDbeta is more closely related to mammalian and yeast PLDs than to plant PLDalpha. Like other PLD enzymes, the monomer of plant PLDbeta consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDbeta may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 180 |
| >gnl|CDD|197295 cd09199, PLDc_pPLDalpha_2, Catalytic domain, repeat 2, of plant alpha-type phospholipase D | Back alignment and domain information |
|---|
Score = 269 bits (690), Expect = 5e-85
Identities = 123/210 (58%), Positives = 155/210 (73%), Gaps = 6/210 (2%)
Query: 539 KDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSY----KNAGADNLIPMELAL 594
KD +D+SI AY+ AIR A+ FIYIENQYF+GSSY W ++ GA +LIP EL+L
Sbjct: 1 KDNIIDRSIQDAYINAIRRAKDFIYIENQYFLGSSYAWSPDGIKPQDIGALHLIPKELSL 60
Query: 595 KIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSN 654
KIVSKI A ERF VYVV+PMWPEG P S +VQ IL WQ +TM MMY +AQAL+ G+ +
Sbjct: 61 KIVSKIEAGERFRVYVVVPMWPEGIPESGSVQAILDWQKRTMEMMYTDIAQALRAQGIDD 120
Query: 655 KYHPQDYLSFYCLGKREAPPLDRSQMNQQTE-NRALAAAQKFRRFMIYVHAKGMIVDDEY 713
+ P+DYL+F+CL RE + ++ E + A AQ+ RRFMIYVH K MIVDDEY
Sbjct: 121 E-DPRDYLTFFCLANREVKKEGEYEPAEKPEEDSDYARAQEARRFMIYVHTKMMIVDDEY 179
Query: 714 VIMGSANINQRSLEGSRDTEIAMGAYQPHY 743
+I+GSANINQRS++G+RD+EIAMGAYQPH+
Sbjct: 180 IIIGSANINQRSMDGARDSEIAMGAYQPHH 209
|
Catalytic domain, repeat 2, of plant alpha-type phospholipase D (PLDalpha, EC 3.1.4.4). Plant PLDalpha is a phosphatidylinositol 4,5-bisphosphate (PIP2)-independent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require millimolar calcium for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDalpha consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDalpha may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 211 |
| >gnl|CDD|197237 cd09139, PLDc_pPLD_like_1, Catalytic domain, repeat 1, of plant phospholipase D and similar proteins | Back alignment and domain information |
|---|
Score = 241 bits (617), Expect = 7e-75
Identities = 91/179 (50%), Positives = 117/179 (65%), Gaps = 4/179 (2%)
Query: 232 GGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKH 291
G+ + + WE++ A+ A+HLIYI GWSV + L+R+ + P + GELLK
Sbjct: 1 NGQVYNPRRLWEDMYDAICNAKHLIYIAGWSVNPEISLIRDSEREDPPKYSPTLGELLKR 60
Query: 292 KSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLS 351
K++EGV VLLL+WDDKT K +GVM THDEETR FF+++ VNC+L PR +
Sbjct: 61 KAEEGVAVLLLLWDDKT---VNGFKNDGVMATHDEETRNFFRNTKVNCLLCPRNGDAGNT 117
Query: 352 IFKQQVVGTLFTHHQKCVIVDTPAS-GNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNT 409
+Q V T FTHHQK VIVD PA G R+I AF+GG+DLCDGRYD PEH LF L+T
Sbjct: 118 YVEQIEVSTAFTHHQKTVIVDAPAPNGERREIVAFVGGIDLCDGRYDNPEHSLFRTLDT 176
|
Catalytic domain, repeat 1, of plant phospholipase D (PLD, EC 3.1.4.4) and similar proteins. Plant PLDs have broad substrate specificity and can hydrolyze the terminal phosphodiester bond of several common membrane phospholipids such as phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), and phosphatidylserine (PS), with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Most plant PLDs possess a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require calcium for activity, which is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDs may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. This subfamily includes two types of plant PLDs, alpha-type and beta-type PLDs, which are derived from different gene products and distinctly regulated. The zeta-type PLD from Arabidopsis is not included in this subfamily. Length = 176 |
| >gnl|CDD|197293 cd09197, PLDc_pPLDalpha_1, Catalytic domain, repeat 1, of plant alpha-type phospholipase D | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 9e-66
Identities = 90/181 (49%), Positives = 127/181 (70%), Gaps = 6/181 (3%)
Query: 232 GGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKH 291
GG+ + +CWE++ A++ A+HLIYI GWSV+ + LVR+ +P P G+L+ GELLK
Sbjct: 1 GGQKYEPTRCWEDVFDAIMNAKHLIYITGWSVYCEIVLVRDSRRPKPG-GDLTLGELLKK 59
Query: 292 KSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLS 351
K+ EGVRVL+L+WDD+TS + F+K +G+M THDEET FF+ S V+C L PR + S
Sbjct: 60 KASEGVRVLMLVWDDRTSVE--FLKKDGLMATHDEETEAFFQDSDVHCFLCPRNPDDGGS 117
Query: 352 IFKQQVVGTLFTHHQKCVIVDTPASGNN---RKISAFIGGLDLCDGRYDTPEHRLFGDLN 408
+ + T+FTHHQK V+VD+P G++ R+I +F+GG+DLCDGRYD P H LF L+
Sbjct: 118 KVQGLQISTMFTHHQKIVVVDSPMPGSDSGRRRIVSFVGGIDLCDGRYDNPFHSLFRTLD 177
Query: 409 T 409
Sbjct: 178 D 178
|
Catalytic domain, repeat 1, of plant alpha-type phospholipase D (PLDalpha, EC 3.1.4.4). Plant PLDalpha is a phosphatidylinositol 4,5-bisphosphate (PIP2)-independent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require millimolar calcium for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDalpha consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDalpha may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 178 |
| >gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 7e-62
Identities = 73/156 (46%), Positives = 98/156 (62%)
Query: 22 PVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPY 81
V LHG LD++I EA +LPNMD+ +E +R+ + C P K ITS+PY
Sbjct: 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPY 61
Query: 82 VSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIP 141
+V L+GA VA+TRVI N ENP W+E F + AH ++EF VKDND++GA+LIG IP
Sbjct: 62 ATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIP 121
Query: 142 VEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177
VE +L G V+ W PI S GK KP ++ VS+Q+
Sbjct: 122 VEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158 |
| >gnl|CDD|197239 cd09141, PLDc_vPLD1_2_yPLD_like_2, Catalytic domain, repeat 2, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 4e-50
Identities = 70/208 (33%), Positives = 107/208 (51%), Gaps = 47/208 (22%)
Query: 542 KVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKIN 601
+ + SI +AY+ I +A+HFIYIENQ+FI SS N I L +I+
Sbjct: 4 QTEDSIQNAYLDLIENAEHFIYIENQFFI-SSTGGEDPVK----NRIGEALVDRIIRAHK 58
Query: 602 ANERFSVYVVIPMWP--EGN---PNSAAVQEILYWQGQTMS----MMYKIVAQALQDNGL 652
E+F VY+V+P+ P EG+ P ++++ I++WQ Q++ + + + + +
Sbjct: 59 EGEKFRVYIVLPLLPGFEGDLDDPGGSSIRAIMHWQYQSICRGEHSLLERLKKEEGVD-- 116
Query: 653 SNKYHPQDYLSFYCLGKREAPPLDR--SQMNQQ--TENRALAAAQKFRRFMIYVHAKGMI 708
P+ Y+SF L R ++ + TE IYVH+K MI
Sbjct: 117 -----PEQYISFLSL---------RTHGKLGGRPVTE-------------QIYVHSKLMI 149
Query: 709 VDDEYVIMGSANINQRSLEGSRDTEIAM 736
VDD VI+GSANIN RS+ G RD+EIA+
Sbjct: 150 VDDRIVIIGSANINDRSMLGDRDSEIAV 177
|
Catalytic domain, repeat 2, of vertebrate phospholipases D (PLD1 and PLD2), yeast phospholipase D (PLD SPO14/PLD1), and other similar eukaryotic proteins. These PLD enzymes play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. The vertebrate PLD1 and PLD2 are membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzymes that selectively hydrolyze phosphatidylcholine (PC). Protein cofactors and calcium may be required for their activation. Yeast SPO14/PLD1 is a calcium-independent PLD, which needs PIP2 for its activity. Instead of the regulatory calcium-dependent phospholipid-binding C2 domain in plants, most mammalian and yeast PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at the N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. The PX and PH domains are also present in zeta-type PLD from Arabidopsis, which is more closely related to vertebrate PLDs than to other plant PLD types. In addition, this subfamily also includes some related proteins which have either PX-like or PH domains in their N-termini. Like other members of the PLD superfamily, the monomer of mammalian and yeast PLDs consists of two catalytic domains, each containing one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from the two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 183 |
| >gnl|CDD|193000 pfam12357, PLD_C, Phospholipase D C terminal | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 1e-35
Identities = 39/74 (52%), Positives = 55/74 (74%)
Query: 771 LEDTFREPQSLECMQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYD 830
LED F EP+SLEC++RVN IA +NWK + + ++ GHL++YPV + R+GKV+ LPG +
Sbjct: 1 LEDCFLEPESLECVRRVNEIAEKNWKLYASEEVTDLPGHLLRYPVGVDRDGKVTELPGCE 60
Query: 831 TFPDVGGKILGAPT 844
FPD G K+LGA +
Sbjct: 61 FFPDTGAKVLGAKS 74
|
This domain family is found in eukaryotes, and is approximately 70 amino acids in length. The family is found in association with pfam00168, pfam00614. There is a conserved FPD sequence motif. This family is the C terminal of phospholipase D. PLD is a major plant lipid-degrading enzyme which is involved in signal transduction. Length = 74 |
| >gnl|CDD|197204 cd09105, PLDc_vPLD1_2_like_2, Catalytic domain, repeat 2, of vertebrate phospholipases, PLD1 and PLD2, and similar proteins | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-32
Identities = 47/199 (23%), Positives = 71/199 (35%), Gaps = 56/199 (28%)
Query: 542 KVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKIN 601
+ I AY+KAIR+A+ +IYIE+QY EL + +
Sbjct: 4 SGEFEIADAYLKAIRNARRYIYIEDQYLW------------------SPELLDALAEALK 45
Query: 602 ANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDY 661
AN V +V+P P+ G + + L + P
Sbjct: 46 ANPGLRVVLVLPALPD-----------AVAFGADDGLDALALLALLLLADAA----PDRV 90
Query: 662 LSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANI 721
F R IYVH+K +IVDDE+ +GSAN+
Sbjct: 91 AVFSLATHRRGLL---------------------GGPPIYVHSKVVIVDDEWATVGSANL 129
Query: 722 NQRSLEGSRDTEIAMGAYQ 740
N+RS+ + DTE+ +
Sbjct: 130 NRRSM--TWDTELNLAVVD 146
|
Catalytic domain, repeat 2, of phospholipase D (PLD, EC 3.1.4.4) found in yeast, plants, and vertebrates, and their bacterial homologs. PLDs are involved in signal transduction, vesicle formation, protein transport, and mitosis by participating in phospholipid metabolism. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Both prokaryotic and eukaryotic PLDs have two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. PLDs are active as bi-lobed monomers. Each monomer contains two domains, each of which carries one copy of the HKD motif. Two HKD motifs from two domains form a single active site. PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 146 |
| >gnl|CDD|215467 PLN02866, PLN02866, phospholipase D | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 7e-32
Identities = 90/249 (36%), Positives = 121/249 (48%), Gaps = 58/249 (23%)
Query: 542 KVDKSIHSAYVKAIRSAQHFIYIENQYFI-GSSYHWPSYKNAGAD---NLIPMELALKIV 597
+V++SIH+AY I A+HFIYIENQ+FI G S G D N + L +I+
Sbjct: 727 QVEESIHAAYCSLIEKAEHFIYIENQFFISGLS---------GDDTIQNRVLEALYRRIL 777
Query: 598 SKINANERFSVYVVIPMWP--EG---NPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGL 652
+ F V +VIP+ P +G + +A+V+ I++WQ +T+ + L D L
Sbjct: 778 RAHKEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGKNSILHNLYDL-L 836
Query: 653 SNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDE 712
K H DY+SFY L + E LA +Q IYVH+K MIVDD
Sbjct: 837 GPKTH--DYISFYGL----------RAYGRLFEGGPLATSQ------IYVHSKIMIVDDR 878
Query: 713 YVIMGSANINQRSLEGSRDTEIA------------MGAYQPHYTWAAKKSHPRGQVYGYR 760
++GSANIN RSL GSRD+EI M W A K + R
Sbjct: 879 AALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMNGKP----WKAGK-----FAHSLR 929
Query: 761 TSLWAEHLG 769
SLW+EHLG
Sbjct: 930 LSLWSEHLG 938
|
Length = 1068 |
| >gnl|CDD|197302 cd09844, PLDc_vPLD1_2, Catalytic domain, repeat 2, of vertebrate phospholipase D1 | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-27
Identities = 70/198 (35%), Positives = 111/198 (56%), Gaps = 32/198 (16%)
Query: 544 DKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINAN 603
++SIH+AYV I +++H+IYIENQ+FI + + N I +A +I+ N
Sbjct: 6 EESIHAAYVSVIENSKHYIYIENQFFISCA------DDKVVFNKIGDAIAQRILKAHREN 59
Query: 604 ERFSVYVVIPMWP--EGNPNSA---AVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHP 658
+R+ VYVVIP+ P EG+ ++ A+Q I+++ +TM + L+ + +++
Sbjct: 60 KRYRVYVVIPLLPGFEGDISTGGGNALQAIMHFNYRTMCRGEHSIIGQLKAE-MGDQW-- 116
Query: 659 QDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGS 718
+Y+SF C G R L+ N TE +IYVH+K +I DD VI+GS
Sbjct: 117 INYISF-C-GLRTHAELEG---NLVTE-------------LIYVHSKLLIADDNTVIIGS 158
Query: 719 ANINQRSLEGSRDTEIAM 736
ANIN RS+ G RD+E+A+
Sbjct: 159 ANINDRSMLGKRDSEMAV 176
|
Catalytic domain, repeat 2, of vertebrate phospholipase D1 (PLD1). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD1 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 182 |
| >gnl|CDD|197203 cd09104, PLDc_vPLD1_2_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, and similar proteins | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 5e-26
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 28/167 (16%)
Query: 240 QCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRV 299
+ ++++ A+ ARH +YI GW V PL + + L ++ GV V
Sbjct: 9 EYFDDLAEALDGARHSVYITGWQVS-----ADIILAPLLAGPDRLGDTLRTLAARRGVDV 63
Query: 300 LLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVG 359
+L+WD + + F + ++ VL R
Sbjct: 64 RVLLWDSPLLV-----LLGPDDKDLNLGFPTFLRLTTALLVLDLRLRR-----------H 107
Query: 360 TLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGD 406
TLF+HHQK V++D + ++ AF+GG+DL GRYD P+H L
Sbjct: 108 TLFSHHQKLVVID------SAEV-AFVGGIDLAYGRYDDPDHALAAP 147
|
Catalytic domain, repeat 1, of phospholipase D (PLD, EC 3.1.4.4) found in yeast, plants, and vertebrates, and their bacterial homologs. PLDs are involved in signal transduction, vesicle formation, protein transport, and mitosis by participating in phospholipid metabolism. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Both prokaryotic and eukaryotic PLDs have two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. PLDs are active as bi-lobed monomers. Each monomer contains two domains, each of which carries one copy of the HKD motif. Two HKD motifs from two domains form a single active site. PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 147 |
| >gnl|CDD|197303 cd09845, PLDc_vPLD2_2, Catalytic domain, repeat 2, of vertebrate phospholipase D2 | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 6e-23
Identities = 60/203 (29%), Positives = 103/203 (50%), Gaps = 42/203 (20%)
Query: 544 DKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINAN 603
+ SI +AY+ I ++QH++Y+ENQ+FI + N I + +I+ +
Sbjct: 6 ENSILNAYLHTIENSQHYLYLENQFFISCA------DGRTVLNKIGDAIVKRILKAHSQG 59
Query: 604 ERFSVYVVIPMWP--EGNPNSA---AVQEILYWQGQTM-----SMMYKIVAQALQDNGLS 653
F V+VVIP+ P EG+ ++ ++Q IL++ +T+ S++ ++ +
Sbjct: 60 WCFRVFVVIPLLPGFEGDISTGGGNSIQAILHFTYRTICRGEYSILSRLKEA------MG 113
Query: 654 NKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEY 713
+ DY+S C G R L S + + +IY+H+K +I DD
Sbjct: 114 TAW--TDYISI-C-GLRTHGELGGSPVTE----------------LIYIHSKVLIADDRT 153
Query: 714 VIMGSANINQRSLEGSRDTEIAM 736
VI+GSANIN RS+ G RD+E+A+
Sbjct: 154 VIIGSANINDRSMLGKRDSELAV 176
|
Catalytic domain, repeat 2, of vertebrate phospholipase D2 (PLD2). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. They also catalyze a transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD2 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 182 |
| >gnl|CDD|215467 PLN02866, PLN02866, phospholipase D | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 3e-20
Identities = 77/240 (32%), Positives = 111/240 (46%), Gaps = 51/240 (21%)
Query: 230 LDGGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELL 289
+DG F E I A+ A+ I+I GW + + L R P LL
Sbjct: 340 IDGHAAF------EAIASAIENAKSEIFITGWWLCPELYLRR----PFHDHESSRLDSLL 389
Query: 290 KHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNK 349
+ K+++GV++ +L++ + L +K V + R H +V + P + S+
Sbjct: 390 EAKAKQGVQIYILLYKEVA----LALKINSVYS----KRRLLGIHENVKVLRYPDHFSSG 441
Query: 350 LSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNT 409
+ L++HH+K VIVD FIGGLDLC GRYDTPEHR+ GD
Sbjct: 442 V---------YLWSHHEKLVIVDYQI--------CFIGGLDLCFGRYDTPEHRV-GDCPP 483
Query: 410 VF--ANDFHNP--SLPS-----------HAKGPREPWHDMHCKVEGPAAYDILINFEQRW 454
V D++NP S P+ K PR PWHD+HC + GP D+ +F QRW
Sbjct: 484 VIWPGKDYYNPRESEPNSWEDTMKDELDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRW 543
|
Length = 1068 |
| >gnl|CDD|197236 cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-18
Identities = 42/173 (24%), Positives = 65/173 (37%), Gaps = 51/173 (29%)
Query: 243 EEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLL 302
+ A+ A+ I+I W + + L R P LLK K++EGV++ +L
Sbjct: 12 WAVADAIENAKEEIFITDWWLSPELYLRR----PPAGNERWRLDRLLKRKAEEGVKIYIL 67
Query: 303 IWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIF--------- 353
++ E +S +Y L
Sbjct: 68 LYK---------------------EVELALTINS-------KYTKRTLENLHPNIKVLRH 99
Query: 354 -KQQVVGTLF-THHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLF 404
G L +HH+K V++D + I AF+GGLDLC GR+DT +H L
Sbjct: 100 PDHLPQGPLLWSHHEKIVVID-------QSI-AFVGGLDLCYGRWDTHQHPLT 144
|
Catalytic domain, repeat 1, of vertebrate phospholipases D (PLD1 and PLD2), yeast phospholipase D (PLD SPO14/PLD1), and other similar eukaryotic proteins. These PLD enzymes play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. The vertebrate PLD1 and PLD2 are membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzymes that selectively hydrolyze phosphatidylcholine (PC). Protein cofactors and calcium may be required for their activation. Yeast SPO14/PLD1 is a calcium-independent PLD, which needs PIP2 for its activity. Instead of the regulatory calcium-dependent phospholipid-binding C2 domain in plants, most mammalian and yeast PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at the N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. The PX and PH domains are also present in zeta-type PLD from Arabidopsis, which is more closely related to vertebrate PLDs than to other plant PLD types. In addition, this subfamily also includes some related proteins which have either PX-like or PH domains in their N-termini. Like other members of the PLD superfamily, the monomer of mammalian and yeast PLDs consists of two catalytic domains, each containing one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from the two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 146 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 2e-17
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCLSGA--TVAQTRVISNCENPFWDEHFCVPVAHSVVN-L 120
R L + S+PYV V L G +T+V+ N NP W+E F V + L
Sbjct: 7 ISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAEL 66
Query: 121 EFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDW 154
E V D D G + IG V IP+ +L G +
Sbjct: 67 EIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-16
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 67 RGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAH-SVVNLEFHVK 125
R L + S+PYV V L G +T+V+ N NP W+E F PV L V
Sbjct: 9 RNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVW 68
Query: 126 DNDILGA-ELIGVVQIPVEKIL-CGNEVDDWFPI 157
D D + +G V+IP+ ++L G E + W P+
Sbjct: 69 DKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|197238 cd09140, PLDc_vPLD1_2_like_bac_1, Catalytic domain, repeat 1, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2 | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-13
Identities = 42/168 (25%), Positives = 62/168 (36%), Gaps = 53/168 (31%)
Query: 247 HAVLEARHLIYIIGWSVFHP-VKLVREPTKP-LPSFGELSFGELLKH--KSQEGVRVLLL 302
A+L AR I I+GW F ++L R P G+ L + + + + +L
Sbjct: 16 EALLRARRSILIVGWD-FDSRIRLRRGGDDDGGPE----RLGDFLNWLAERRPDLDIRIL 70
Query: 303 IWDDKTSHDNLFIKTEGVMQTHDEETRKFFK-----HSSVNCVLA---PRYASNKLSIFK 354
WD F ++ + E F H ++ L P AS
Sbjct: 71 KWD--------F----AMLYALERELLPLFLLRWKTHPRIHFRLDGHHPLGAS------- 111
Query: 355 QQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHR 402
HHQK V++D + AF GG+DL R+DT EH
Sbjct: 112 ---------HHQKIVVID-------DAL-AFCGGIDLTVDRWDTREHL 142
|
Catalytic domain, repeat 1, of uncharacterized bacterial counterparts of vertebrate, yeast and plant phospholipase D (PLD, EC 3.1.4.4). PLDs hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. They also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Instead of the regulatory C2 (calcium-activated lipid binding) domain in plants and the adjacent Phox (PX) and the Pleckstrin homology (PH) N-terminal domains in most mammalian and yeast PLDs, many members in this subfamily contain a SNARE associated C-terminal domain, whose functional role is unclear. Like other PLD enzymes, members in this subfamily contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), that may play an important role in the catalysis. Length = 146 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-12
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 67 RGLSGRHSMITSNPYVSVCLSGATVA--QTRVISNCENPFWDEHFCVPVA-HSVVNLEFH 123
+ L + S+PYV V L G +T+V+ N NP W+E F V + L
Sbjct: 9 KNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLPELAELRIE 68
Query: 124 VKDNDILGA-ELIGVVQ 139
V D D G + IG V
Sbjct: 69 VYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-10
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 67 RGLSGRHSMITS-NPYVSVCLSGATVAQTRVISNCENPFWD---EHFCVPVAHSVVNLEF 122
+GL S +PY + L+G V TRV NP W+ E S V
Sbjct: 1 KGLDTSESKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRV--TV 58
Query: 123 HVKDNDILGAELIGVVQIPVEKILCGNEVD-DWFPIAGSYGKNLKPFPQLHVSMQYKPI 180
VKD+ ++G V I + ++ V WFP++G+ ++ +S +KP+
Sbjct: 59 VVKDDRDRHDPVLGSVSISLNDLIDATSVGQQWFPLSGN------GQGRIRISALWKPV 111
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|197241 cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain, repeat 2, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2 | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 3e-10
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 15/60 (25%)
Query: 687 RALAAAQKFRRF-------------MIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTE 733
R L A + R IYVH+K MIVDD + +GSAN+N RS+ DTE
Sbjct: 78 RRLREADRHGRLRVYYPVTAGGGGRPIYVHSKLMIVDDRLLRVGSANLNNRSM--GLDTE 135
|
Catalytic domain, repeat 2, of uncharacterized bacterial counterparts of vertebrate, yeast and plant phospholipase D (PLD, EC 3.1.4.4). PLDs hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. They also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Instead of the regulatory C2 (calcium-activated lipid binding) domain in plants and the adjacent Phox (PX) and the Pleckstrin homology (PH) N-terminal domains in most mammalian and yeast PLDs, many members in this subfamily contain a SNARE associated C-terminal domain, whose functional role is unclear. Like other PLD enzymes, members in this subfamily contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), that may play an important role in the catalysis. Length = 142 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-10
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 67 RGLSGRHSMITSNPYVSVCLSGAT--VAQTRVISNCENPFWDEHFCVPVAHSVVN-LEFH 123
++ + T + YV + L A+ +T+ I N NP W+E F + V N LE
Sbjct: 10 TNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELT 69
Query: 124 VKDNDILGAELIGVVQIPVEKILCGNEVDDWFPI 157
V D D + + +G V V K+ G +V F +
Sbjct: 70 VMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSL 103
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|197300 cd09842, PLDc_vPLD1_1, Catalytic domain, repeat 1, of vertebrate phospholipase D1 | Back alignment and domain information |
|---|
Score = 57.0 bits (137), Expect = 1e-09
Identities = 45/173 (26%), Positives = 85/173 (49%), Gaps = 34/173 (19%)
Query: 234 KTFRHGQCW-EEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHK 292
K + + +C+ E++ +A+ EA+ I+I W + + L R P+ +LK K
Sbjct: 2 KWYVNAKCYFEDVANAMEEAKEEIFITDWWLSPEIFLKR----PVVEGNRWRLDCILKRK 57
Query: 293 SQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFK--HSSVNCVLAPRYASNKL 350
+Q+GVR+ ++ L+ + E + + E +++ H ++ + P + S+
Sbjct: 58 AQQGVRIFVM----------LYKEVELALGINSEYSKRTLMRLHPNIKVMRHPDHVSS-- 105
Query: 351 SIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRL 403
S++ L+ HH+K V++D AF+GG+DL GR+D EHRL
Sbjct: 106 SVY-------LWAHHEKIVVIDQSV--------AFVGGIDLAYGRWDDDEHRL 143
|
Catalytic domain, repeat 1, of vertebrate phospholipase D1 (PLD1). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD1 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 151 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 5e-09
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 60 RFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVA--HSV 117
R +K L + +PYV V ++G +T ISN NP WDE VPV +
Sbjct: 4 RLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQK 63
Query: 118 VNLEFHVKDNDILGAE-LIGVVQIPVEKIL 146
+ LE + +G + +G V+I V ++
Sbjct: 64 ITLEVMDYEK--VGKDRSLGSVEINVSDLI 91
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|224419 COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 6e-09
Identities = 65/360 (18%), Positives = 103/360 (28%), Gaps = 122/360 (33%)
Query: 216 QDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTK 275
Q G ++ DG F + + A+ IY+ + ++ +L RE
Sbjct: 52 QGVLPISGNGVDLLKDGADAFAA------LIELIEAAKKSIYL-QYYIWQDDELGRE--- 101
Query: 276 PLPSFGELSFGELLKHKSQEGVRVLLLIWD----DKTSHDNL-FIKTEGVMQTHDEETRK 330
+ L ++ GV V LL+ D L +K G+ EE R
Sbjct: 102 ---------ILDALIEAAKRGVEVRLLLDDIGSTRGLLKSLLALLKRAGI-----EEVRL 147
Query: 331 FFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLD 390
F S R N+ H+K V++D AF+GG +
Sbjct: 148 FNPASPRPLRF-RRL--NRR-------------LHRKIVVIDGKV--------AFVGGAN 183
Query: 391 LCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINF 450
+ D + H W D+H ++ GPA D+ F
Sbjct: 184 IGDEYF--------------------------HKDKGLGYWRDLHVRITGPAVADLARLF 217
Query: 451 EQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQ 510
Q W + S KP A
Sbjct: 218 IQDWNLESG--------------------------------SSKPLLAL----------- 234
Query: 511 VFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFI 570
V + S S+ + V + ++ +KAI SA+ I I YF+
Sbjct: 235 VRPPLQSLSLLPVGRGSTVQVLSSGPDKGLGSELIELNRLLLKAINSARESILIATPYFV 294
|
Length = 438 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 9e-08
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 77 TSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVN---LEFHVKDNDILGAE 133
T +PY +V L VA+T+ + NPFW E F V L F+ KD +
Sbjct: 17 TRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75
Query: 134 -LIGVVQIPVEKILCGNEVDDWFPIAG 159
+IG V + + G D+WFP+
Sbjct: 76 IVIGKVALSKLDL--GQGKDEWFPLTP 100
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|224419 COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 697 RFMIYVHAKGMIVDDEYVIMGSANINQRSLEGS-------RDTEIAMGAYQPHYTWAAKK 749
++H+K MI+DD V++GSAN++ RSL + D E+A + + +
Sbjct: 350 PGGAFLHSKVMIIDDRTVLVGSANLDPRSLRLNFEVGLVIEDPELA-LKLRREFEADLAR 408
Query: 750 SHP 752
S
Sbjct: 409 SKR 411
|
Length = 438 |
| >gnl|CDD|197301 cd09843, PLDc_vPLD2_1, Catalytic domain, repeat 1, of vertebrate phospholipase D2 | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-07
Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 36/162 (22%)
Query: 245 ICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGE-LSFGELLKHKSQEGVRVLLLI 303
+ A+ +A+ I+I W + V L R P+ G+ +LK K+++GVRV +L
Sbjct: 14 VADALEQAQEEIFITDWWLSPEVFLKR------PAHGDDWRLDIILKRKAEQGVRVCVL- 66
Query: 304 WDDKTSHDNLFIKTEGVMQTHDEETRK--FFKHSSVNCVLAPRYASNKLSIFKQQVVGTL 361
LF + E + + +++ H ++ + P + ++ V L
Sbjct: 67 ---------LFKEVELALGINSGYSKRKLMLLHPNIKVMRHPDHVAS---------VVVL 108
Query: 362 FTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRL 403
+ HH+K V +D + AF+GGLDL GR+D ++RL
Sbjct: 109 WAHHEKMVAID--------QSVAFLGGLDLAYGRWDDSDYRL 142
|
Catalytic domain, repeat 1, of vertebrate phospholipase D2 (PLD2). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. They also catalyze a transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD2 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 145 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 77 TSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPV-AHSVVNLEFHVKDNDILGAELI 135
S+PYV V + GA +++VI NP W+E + V LE + D D + +
Sbjct: 27 KSDPYVIVRV-GAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFL 85
Query: 136 GVVQIPVEKILCGNEVDDWFP 156
G + I + + +D+W P
Sbjct: 86 GRLSIDLGSVEKKGFIDEWLP 106
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|197226 cd09128, PLDc_unchar1_2, Putative catalytic domain, repeat 2, of uncharacterized phospholipase D-like proteins | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 676 DRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIA 735
D Q + A + + + +HAKG++VD + ++GS N + SL+ +R+ +
Sbjct: 65 DERQARLRALEGAGVPVRLLKDKFLKIHAKGIVVDGKTALVGSENWSANSLDRNREVGLI 124
Query: 736 M 736
Sbjct: 125 F 125
|
Putative catalytic domain, repeat 2, of uncharacterized phospholipase D (PLD, EC 3.1.4.4)-like proteins. PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze transphosphatidylation of phospholipids to acceptor alcohols. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the PLD superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer. Length = 142 |
| >gnl|CDD|197546 smart00155, PLDc, Phospholipase D | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 698 FMIYVHAKGMIVDDEYVIMGSANINQRS 725
+ +H K MIVDDE +GSAN++ RS
Sbjct: 1 YDGVLHTKLMIVDDEIAYIGSANLDGRS 28
|
Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not been achieved. Length = 28 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 24/66 (36%), Positives = 32/66 (48%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFH 123
K+ R L+ R TS+PYV G TV +++ I NP WDE F +P+ L
Sbjct: 7 KEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIK 66
Query: 124 VKDNDI 129
V D D
Sbjct: 67 VFDYDR 72
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 64 KKTRGLSGRHSMI--TSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLE 121
K GL S I T +PY++V S + +TRV N NP W+E F + + L
Sbjct: 443 KSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLN 502
Query: 122 FHVKD-NDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYG--KNLKPFPQLHVSMQYK 178
+ D N +++G Q+ + + + Y +N K +L +++
Sbjct: 503 LSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNEL-----YEFLRNTKNVGRLTYDLRFF 557
Query: 179 P 179
P
Sbjct: 558 P 558
|
Length = 1227 |
| >gnl|CDD|197209 cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, of bacterial cardiolipin synthase and similar proteins | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 4e-06
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 34/91 (37%)
Query: 365 HQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHA 424
H+K +++D KI AF+GG ++ D Y
Sbjct: 98 HRKILVID-------GKI-AFVGGFNIGD-EY-------------------------LGK 123
Query: 425 KGPREPWHDMHCKVEGPAAYDILINFEQRWR 455
PW D H ++EGPA D+ F + W
Sbjct: 124 DPGFGPWRDTHVRIEGPAVADLQAAFLEDWY 154
|
Catalytic domain, repeat 1, of bacterial cardiolipin (CL) synthase and a few homologs found in eukaryotes and archaea. Bacterial CL synthases catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. The monomer of bacterial CL synthase consists of two catalytic domains. Each catalytic domain contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. Two HKD motifs from two domains form a single active site involved in phosphatidyl group transfer. Bacterial CL synthases can be stimulated by phosphate and inhibited by CL, the product of the reaction, and by phosphatidate. Phosphate stimulation may be unique to enzymes with CL synthase activity belonging to the PLD superfamily. Like other PLD enzymes, bacterial CL synthases utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 154 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 4e-06
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 64 KKTRGLSGRHSM-ITSNPYVSVCLSGATV-AQTRVISNCENPFWDEHFCVPVAHSVVNLE 121
K RGL G + T +PYV+ +S A+T+V + NP W+E + V L
Sbjct: 9 KSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLN 68
Query: 122 FHVKD-NDILGAELIGVVQIPVEKIL 146
V D ND +LIG + + +L
Sbjct: 69 LTVYDFNDKRKDKLIGTAEFDLSSLL 94
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|221916 pfam13091, PLDc_2, PLD-like domain | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 8e-06
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 703 HAKGMIVDDEYVIMGSANINQRSLEGSRDT 732
HAK I+D + I+GS+N+ +R+L + +
Sbjct: 79 HAKFYIIDGKTAIIGSSNLTRRALSLNLEN 108
|
Length = 129 |
| >gnl|CDD|197241 cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain, repeat 2, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2 | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 551 YVKAIRSAQHFIYIENQYF 569
Y+ AI +A+ FIYIENQYF
Sbjct: 13 YLDAIAAARRFIYIENQYF 31
|
Catalytic domain, repeat 2, of uncharacterized bacterial counterparts of vertebrate, yeast and plant phospholipase D (PLD, EC 3.1.4.4). PLDs hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. They also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Instead of the regulatory C2 (calcium-activated lipid binding) domain in plants and the adjacent Phox (PX) and the Pleckstrin homology (PH) N-terminal domains in most mammalian and yeast PLDs, many members in this subfamily contain a SNARE associated C-terminal domain, whose functional role is unclear. Like other PLD enzymes, members in this subfamily contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), that may play an important role in the catalysis. Length = 142 |
| >gnl|CDD|197200 cd00138, PLDc_SF, Catalytic domain of phospholipase D superfamily proteins | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 696 RRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDT 732
F +HAK +++D E +GSAN++ S +R+
Sbjct: 79 PHFFERLHAKVVVIDGEVAYVGSANLSTASAAQNREA 115
|
Catalytic domain of phospholipase D (PLD) superfamily proteins. The PLD superfamily is composed of a large and diverse group of proteins including plant, mammalian and bacterial PLDs, bacterial cardiolipin (CL) synthases, bacterial phosphatidylserine synthases (PSS), eukaryotic phosphatidylglycerophosphate (PGP) synthase, eukaryotic tyrosyl-DNA phosphodiesterase 1 (Tdp1), and some bacterial endonucleases (Nuc and BfiI), among others. PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze the transphosphatidylation of phospholipids to acceptor alcohols. The majority of members in this superfamily contain a short conserved sequence motif (H-x-K-x(4)-D, where x represents any amino acid residue), called the HKD signature motif. There are varying expanded forms of this motif in different family members. Some members contain variant HKD motifs. Most PLD enzymes are monomeric proteins with two HKD motif-containing domains. Two HKD motifs from two domains form a single active site. Some PLD enzymes have only one copy of the HKD motif per subunit but form a functionally active dimer, which has a single active site at the dimer interface containing the two HKD motifs from both subunits. Different PLD enzymes may have evolved through domain fusion of a common catalytic core with separate substrate recognition domains. Despite their various catalytic functions and a very broad range of substrate specificities, the diverse group of PLD enzymes can bind to a phosphodiester moiety. Most of them are active as bi-lobed monomers or dimers, and may possess similar core structures for catalytic activity. They are generally thought to utilize a common two-step ping-pong catalytic mechanism, involving an enzyme-substrate intermediate, to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 119 |
| >gnl|CDD|197211 cd09112, PLDc_CLS_2, catalytic domain repeat 2 of bacterial cardiolipin synthase and similar proteins | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 2e-05
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 701 YVHAKGMIVDDEYVIMGSANINQRSLE 727
++H+K +IVDDE +G+AN++ RS E
Sbjct: 92 FLHSKTLIVDDEIASVGTANLDIRSFE 118
|
This CD corresponds to the catalytic domain repeat 2 of bacterial cardiolipin synthase (CL synthase, EC 2.7.8.-) and a few homologs found in eukaryotes and archea. Bacterial CL synthases catalyze reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form cardiolipin (CL) and glycerol. The monomer of bacterial CL synthase consists of two catalytic domains. Each catalytic domain contains one copy of conserved HKD motifs (H-X-K-X(4)-D, X represents any amino acid residue) that are the characteristic of the phospholipase D (PLD) superfamily. Two HKD motifs from two domains together form a single active site involving in phosphatidyl group transfer. Bacterial CL synthases can be stimulated by phosphate and inhibited by CL, the product of the reaction, and by phosphatidate. Phosphate stimulation may be unique to enzymes with CL synthase activity in PLD superfamily. Like other PLD enzymes, bacterial CL synthase utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid stabilizing the leaving group. Length = 174 |
| >gnl|CDD|216022 pfam00614, PLDc, Phospholipase D Active site motif | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 699 MIYVHAKGMIVDDEYVIMGSANINQRS 725
+H K ++VDDE +G AN++ S
Sbjct: 2 DGRLHTKIVVVDDEVAYIGGANLDGGS 28
|
Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site. aspartic acid. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not been achieved. Length = 28 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 78 SNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVN---LEFHVKD-NDILGAE 133
+ V G +TRV+ N NP W+E F P+A S LE VKD +
Sbjct: 15 GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNR 73
Query: 134 LIGVVQIPVEKIL 146
LIG + ++ ++
Sbjct: 74 LIGSATVSLQDLV 86
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 75 MITSNPYVSVCLSGATVAQTRVISNCENPFWDEH--FCVPVAHSVVNLEFHVKDNDILGA 132
+S+PYV + L G +TRVI NP W+E VP + + LE V D D
Sbjct: 19 FTSSDPYVVLTL-GNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLE--VFDKDTFSK 75
Query: 133 E 133
+
Sbjct: 76 D 76
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-05
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 78 SNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVN-LEFHVKDNDILGA-ELI 135
S+P+V L+G V +T+ I NP W+E F VPV V L+ V D D G +L+
Sbjct: 20 SDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL 79
Query: 136 GVVQIPVEKI 145
G I + +
Sbjct: 80 GSAYIDLSDL 89
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 7e-05
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 77 TSNPYVSVCLSGA-----TVAQTRVIS-NCENPFWDEHFCVPVAH-SVVNLEFHVKDNDI 129
+PYV V + G +T+V+ N NP W+E F V + L F V D D
Sbjct: 24 IVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDS 83
Query: 130 LGAELIGVVQIPVEKILCG 148
+ +G +P++ + G
Sbjct: 84 GDDDFLGQACLPLDSLRQG 102
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-05
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Query: 78 SNPYVSVCL------SGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLE-----FHVKD 126
S+P+V V L +T+V P +DE F V ++E F VKD
Sbjct: 37 SDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKD 96
Query: 127 NDILGA-ELIG 136
D+LG+ + G
Sbjct: 97 YDLLGSNDFEG 107
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|197259 cd09162, PLDc_CLS_unchar1_2, Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin synthase | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 702 VHAKGMIVDDEYVIMGSANINQRSL 726
+HAK ++VDD+ ++GSAN++ RSL
Sbjct: 93 LHAKAVVVDDKLALVGSANLDMRSL 117
|
Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin (CL) synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer. Length = 172 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 65 KTRGLSGRHSMITSNPYVSVCLSGATVAQTRVI-SNCENPFWDEHFCVPVAHSVVN-LEF 122
K R L + + +PY + + G +T+ ++P WDE + L+
Sbjct: 9 KARNLPNKRKLDKQDPYCVLRIGG-VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKV 67
Query: 123 HVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPI 157
V D+D +LIG ++ + L E DDW+ +
Sbjct: 68 AVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYEL 102
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 69 LSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDND 128
+ Y +V L V +T+ + PF+ E F + + +L F++ D D
Sbjct: 13 PPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRD 72
Query: 129 ILGAEL-IGVVQIPVEKILCGNEVDDWFPI 157
+L + IG V I E + D WFP+
Sbjct: 73 VLRRDSVIGKVAIKKEDLHKYYGKDTWFPL 102
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 65 KTRGLSGRHSMITSNPYVSVCL--SGATVAQTRVISNCENPFWDEHFCVPVAHSVV---N 119
+ R SG T++PY V L + Q+++ NP +DE F V +
Sbjct: 29 QPRDFSG-----TADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRT 83
Query: 120 LEFHVKDNDILGA-ELIGVVQIPVEKILCGNEVDDWFPI 157
LE + D D E IGVV++P+ ++ ++D W I
Sbjct: 84 LEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 65 KTRGLSGRH-SMITSNPYVSVCL--SGATVAQTRVISNCENPFWDEHFCVPVAHSVVN-- 119
K R L R + +P+V VCL Q++V +NP +DE F V+ +
Sbjct: 22 KARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRR 81
Query: 120 -LEFHVKDNDILGAE-LIGVVQIPVEKILCGNEVD 152
L V D D +IG V P L ++
Sbjct: 82 TLRLSVYDVDRFSRHCIIGHVLFP----LKDLDLV 112
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 36/137 (26%)
Query: 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVS 83
F L + I++A LP MD M G TS+PYV
Sbjct: 13 FQSNQLTVGIIQAADLPAMD-----------MGG-------------------TSDPYVK 42
Query: 84 VCLSGATVA--QTRVISNCENPFWDEHFCVPVAHSVVN---LEFHVKDND-ILGAELIGV 137
V L +T+V NP ++E F V +S + L F V D D +LIG
Sbjct: 43 VYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGE 102
Query: 138 VQIPVEKILCGNEVDDW 154
V++P+ + G+ ++W
Sbjct: 103 VRVPLLTVDLGHVTEEW 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|197256 cd09159, PLDc_ybhO_like_2, Catalytic domain, repeat 2, of Escherichia coli cardiolipin synthase ybhO and similar proteins | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 703 HAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQP 741
HAK ++D ++ +GS+N++ RSL + E + P
Sbjct: 94 HAKTAVIDGDWATVGSSNLDPRSL--RLNLEANLVVEDP 130
|
Catalytic domain, repeat 2, of Escherichia coli cardiolipin (CL) synthase ybhO and similar proteins. In Escherichia coli, there are two genes, f413 (ybhO) and o493 (ymdC), which are homologous to gene cls that encodes the Escherichia coli CL synthase. The prototype of this subfamily is Escherichia coli CL synthase ybhO specified by the f413 (ybhO) gene. ybhO is a membrane-bound protein that catalyzes the formation of cardiolipin (CL) by transferring phosphatidyl group between two phosphatidylglycerol molecules. It can also catalyze phosphatidyl group transfer to water to form phosphatidate. In contrast to the Escherichia coli CL synthase encoded by the cls gene (EcCLS), ybhO does not hydrolyze CL. Moreover, ybhO lacks an N-terminal segment encoded by Escherichia coli cls, which makes ybhO easy to denature. The monomer of ybhO consists of two catalytic domains. Each catalytic domain contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. Two HKD motifs from two domains form a single active site involved in phosphatidyl group transfer. ybhO can be stimulated by phosphate and inhibited by CL, the product of the reaction, and by phosphatidate. Phosphate stimulation may be unique to enzymes with CL synthase activity belonging to the PLD superfamily. Length = 170 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 78 SNPYVSVCLSGA--TVAQTRVISNCENPFWDEHFCVPVAH-SVVNLEFHVKDNDILGA-E 133
S+PYV++ + +A+TR I + NP WDE F + V + + V D +G +
Sbjct: 22 SDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81
Query: 134 LIG 136
L G
Sbjct: 82 LCG 84
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 79 NPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPV-AHSVVNLEFHVKDNDILGA-ELIG 136
+PYV V + G +T V NP W+EHF V V S LEF V + L A L+G
Sbjct: 23 DPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQST--LEFKVWSHHTLKADVLLG 80
Query: 137 VVQIPVEKIL 146
+ + IL
Sbjct: 81 EASLDLSDIL 90
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|234967 PRK01642, cls, cardiolipin synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 5e-04
Identities = 65/344 (18%), Positives = 103/344 (29%), Gaps = 142/344 (41%)
Query: 243 EEICHAVLE----ARHLI----YIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQ 294
+E A++ ARH I YI P L + E L ++
Sbjct: 125 DETFQAIIRDIELARHYILMEFYIW-----RPDGLGDQ------------VAEALIAAAK 167
Query: 295 EGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCV------LAPRYASN 348
GVRV LL D S FF+ + + N
Sbjct: 168 RGVRVRLLY-DSIGSF-------------------AFFRSPYPEELRNAGVEVVEFLKVN 207
Query: 349 KLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLN 408
+F++++ +H+K V++D A+ G +++ D Y F
Sbjct: 208 LGRVFRRRLD---LRNHRKIVVID-----GYI---AYTGSMNVVDPEY-------FK--- 246
Query: 409 TVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKV 468
+P + W D H ++EGP + + F + W
Sbjct: 247 -------QDPGVG--------QWRDTHVRIEGPVVTALQLIFAEDW-------------- 277
Query: 469 THW--YDDSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKD 526
W + L + I P +E +QV I SG P D
Sbjct: 278 -EWETGERILPPPPDVLIMP--------------FEEASGHTVQV---IASG-----PGD 314
Query: 527 VEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFI 570
EE IH + AI SA+ ++I YF+
Sbjct: 315 PEET----------------IHQFLLTAIYSARERLWITTPYFV 342
|
Length = 483 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 7e-04
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 77 TSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGA-ELI 135
+S+PY V + + +T + NPFW E + V + + F+V D D L ++I
Sbjct: 20 SSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVI 79
Query: 136 GVVQIPVEKI 145
G V + E I
Sbjct: 80 GKVSLTREVI 89
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|197211 cd09112, PLDc_CLS_2, catalytic domain repeat 2 of bacterial cardiolipin synthase and similar proteins | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.001
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 544 DKSIHSAYVKAIRSAQHFIYIENQYFI 570
SI AY+KAI SA+ IYI+ YFI
Sbjct: 9 WSSIEQAYLKAINSAKKSIYIQTPYFI 35
|
This CD corresponds to the catalytic domain repeat 2 of bacterial cardiolipin synthase (CL synthase, EC 2.7.8.-) and a few homologs found in eukaryotes and archea. Bacterial CL synthases catalyze reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form cardiolipin (CL) and glycerol. The monomer of bacterial CL synthase consists of two catalytic domains. Each catalytic domain contains one copy of conserved HKD motifs (H-X-K-X(4)-D, X represents any amino acid residue) that are the characteristic of the phospholipase D (PLD) superfamily. Two HKD motifs from two domains together form a single active site involving in phosphatidyl group transfer. Bacterial CL synthases can be stimulated by phosphate and inhibited by CL, the product of the reaction, and by phosphatidate. Phosphate stimulation may be unique to enzymes with CL synthase activity in PLD superfamily. Like other PLD enzymes, bacterial CL synthase utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid stabilizing the leaving group. Length = 174 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPV-AHSVVNLEF 122
K R G S+PY + + GA +T+ I N NP W+ P+ + L+
Sbjct: 15 AKDRSGKG-----KSDPYAILSV-GAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKL 68
Query: 123 HVKDND-ILGAELIGVVQIPVEKILCGNEV---DDWFPI 157
+ D D G + +G I +E++ + D W +
Sbjct: 69 ILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITL 107
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|197260 cd09163, PLDc_CLS_unchar2_2, Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin synthase | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.001
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 703 HAKGMIVDDEYVIMGSANINQRSL 726
H+K M+VD + ++GSAN + RSL
Sbjct: 94 HSKLMVVDGAWALIGSANWDPRSL 117
|
Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin (CL) synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer. Length = 176 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 60 RFPFKKTRGLS-GRHSMITSNPYVSVCLS--GATVAQTRVISNCENPFWDEHFCVPVAHS 116
+ L +S+PYV+ + G + TR+I NP W+E + V V
Sbjct: 4 VVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPD 63
Query: 117 VVN----LEFHVKDNDILGA-ELIGVVQIPVEKIL 146
V L + D+D A + +G V+I +++++
Sbjct: 64 EVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI 98
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 18/118 (15%)
Query: 64 KKTRGLSGRHSM-----ITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVV 118
K T S RH++ +PYVS+ + + +T +P W+E F V H+
Sbjct: 17 KPTD-WSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEV-HNGR 74
Query: 119 NLEFHVKDNDILGA-ELIGVVQIPVEKIL--CGNEVDDWFPIAGSYGKNLKPFPQLHV 173
NLE V + +G + + I E ++ D W +L+P +LHV
Sbjct: 75 NLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWV--------DLEPQGKLHV 124
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 17/151 (11%)
Query: 5 GNVTPKSTSSGSAASDEPVFLH----GDLDLSILE---AKSLPNMDLITESMRKCCNMCG 57
VT + S A ++P L+ + + + LP ++++ S G
Sbjct: 989 CEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENS--------G 1040
Query: 58 HCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSV 117
+ + L S+P+V + L+ +V +T+V+ NP W+E F + V + V
Sbjct: 1041 YLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRV 1100
Query: 118 VN-LEFHVKDNDILGA-ELIGVVQIPVEKIL 146
+ L +V D D +L+G +I + K+
Sbjct: 1101 KDVLTINVNDWDSGEKNDLLGTAEIDLSKLE 1131
|
Length = 1227 |
| >gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 78 SNPYVSVCLSG-ATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAE-LI 135
SNPY + + Q+ N NPFWDEHF ++ + L F V DN +
Sbjct: 18 SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFL 77
Query: 136 GVVQIPVE 143
G+ +P +
Sbjct: 78 GLAIVPFD 85
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 65 KTRGLSGRHSMITSNPYVSVCL--SGATVA--QTRVISNCENPFWDEHFCVPVAH---SV 117
K R L S+PYV V L G + +T V NP ++E F V
Sbjct: 22 KARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEE 81
Query: 118 VNLEFHVKDNDILG-AELIGVV 138
V+L V D D +G E+IG V
Sbjct: 82 VSLVITVVDKDSVGRNEVIGQV 103
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|197212 cd09113, PLDc_ymdC_like_2, Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 703 HAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAM 736
HAK ++DD V +GS N++ RS +TE+ +
Sbjct: 118 HAKSFVIDDRLVFVGSFNLDPRSA--YLNTEMGL 149
|
Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins. In Escherichia coli, there are two genes, f413 (ybhO) and o493 (ymdC), which are homologous to gene cls that encodes the Escherichia coli cardiolipin (CL) synthase. The prototype of this subfamily is an uncharacterized protein ymdC specified by the o493 (ymdC) gene. Although the functional characterization of ymdC and similar proteins remains unknown, members of this subfamily show high sequence homology to bacterial CL synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Moreover, ymdC and its similar proteins contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characteriszes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer. Length = 218 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 79 NPYVSVCLSGATVAQTRVISNC-ENPFWDEHFCVPV-------AHSVVNLEFHVKDNDIL 130
Y V + + T V + NP W+E P+ + +E + + L
Sbjct: 22 KVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-SL 80
Query: 131 GAELIGVVQIPV 142
G +LIG V++P+
Sbjct: 81 GDKLIGEVRVPL 92
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175983 cd04016, C2_Tollip, C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 79 NPYVSVCLSGATVAQTRVISN-CENPFWDEHFCVPVAHSVVNLEFHVKDNDILGA-ELI- 135
+PY + + G V +T N +NP W++ + V ++ + D E I
Sbjct: 23 DPYCRIRV-GHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIA 81
Query: 136 -GVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVS 174
+ IP E + G +DDW+ ++G G++ + L S
Sbjct: 82 WTHITIP-ESVFNGETLDDWYSLSGKQGEDKEGMINLVFS 120
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 121 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 852 | |||
| PLN03008 | 868 | Phospholipase D delta | 100.0 | |
| PLN02270 | 808 | phospholipase D alpha | 100.0 | |
| PLN02352 | 758 | phospholipase D epsilon | 100.0 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 100.0 | |
| PLN02866 | 1068 | phospholipase D | 100.0 | |
| PRK12452 | 509 | cardiolipin synthetase; Reviewed | 100.0 | |
| PRK01642 | 483 | cls cardiolipin synthetase; Reviewed | 100.0 | |
| PRK11263 | 411 | cardiolipin synthase 2; Provisional | 100.0 | |
| COG1502 | 438 | Cls Phosphatidylserine/phosphatidylglycerophosphat | 100.0 | |
| PHA02820 | 424 | phospholipase-D-like protein; Provisional | 100.0 | |
| PRK09428 | 451 | pssA phosphatidylserine synthase; Provisional | 100.0 | |
| PHA03003 | 369 | palmytilated EEV membrane glycoprotein; Provisiona | 100.0 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.94 | |
| PF12357 | 74 | PLD_C: Phospholipase D C terminal ; InterPro: IPR0 | 99.9 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.85 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.85 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.81 | |
| PRK05443 | 691 | polyphosphate kinase; Provisional | 99.8 | |
| TIGR03705 | 672 | poly_P_kin polyphosphate kinase 1. Members of this | 99.78 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.78 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.77 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.75 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.75 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.75 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.73 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.73 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.71 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.71 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.71 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.7 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.69 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.69 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.67 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.67 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.67 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.67 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.66 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.65 | |
| KOG3603 | 456 | consensus Predicted phospholipase D [General funct | 99.64 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.64 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.64 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.63 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.63 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.63 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.63 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.63 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.62 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.61 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.61 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.61 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.61 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.61 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.6 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.6 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.6 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.58 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.58 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.58 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.58 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.57 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.57 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.56 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.56 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.56 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.56 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.56 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.55 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.55 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.55 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.54 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.54 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.53 | |
| cd00138 | 176 | PLDc Phospholipase D. Active site motifs; The PLD | 99.53 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.53 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.53 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.53 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.52 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.52 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.51 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.51 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.5 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.5 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.5 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.49 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.49 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.49 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.48 | |
| PHA02820 | 424 | phospholipase-D-like protein; Provisional | 99.48 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.48 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.47 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.47 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.47 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.47 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.47 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.46 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.46 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.46 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.46 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.45 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.45 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.43 | |
| PHA03003 | 369 | palmytilated EEV membrane glycoprotein; Provisiona | 99.42 | |
| PRK12452 | 509 | cardiolipin synthetase; Reviewed | 99.41 | |
| PRK13912 | 177 | nuclease NucT; Provisional | 99.4 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.39 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.39 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.38 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.38 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.38 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.37 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.35 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.35 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.35 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.33 | |
| PRK13912 | 177 | nuclease NucT; Provisional | 99.32 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.31 | |
| cd00138 | 176 | PLDc Phospholipase D. Active site motifs; The PLD | 99.27 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.2 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.17 | |
| PF13091 | 126 | PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A | 99.17 | |
| PF13091 | 126 | PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A | 99.15 | |
| PRK01642 | 483 | cls cardiolipin synthetase; Reviewed | 99.14 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.14 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.06 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.05 | |
| PRK11263 | 411 | cardiolipin synthase 2; Provisional | 99.01 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.96 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 98.94 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 98.88 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.87 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 98.86 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.85 | |
| PF00614 | 28 | PLDc: Phospholipase D Active site motif; InterPro: | 98.84 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 98.8 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.76 | |
| PRK05443 | 691 | polyphosphate kinase; Provisional | 98.76 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.75 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.7 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.68 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.64 | |
| KOG3603 | 456 | consensus Predicted phospholipase D [General funct | 98.62 | |
| smart00155 | 28 | PLDc Phospholipase D. Active site motifs. Phosphat | 98.59 | |
| PRK09428 | 451 | pssA phosphatidylserine synthase; Provisional | 98.55 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.41 | |
| COG1502 | 438 | Cls Phosphatidylserine/phosphatidylglycerophosphat | 98.39 | |
| PF00614 | 28 | PLDc: Phospholipase D Active site motif; InterPro: | 98.26 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.18 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.13 | |
| KOG3964 | 469 | consensus Phosphatidylglycerolphosphate synthase [ | 97.92 | |
| PF13918 | 177 | PLDc_3: PLD-like domain | 97.91 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.85 | |
| PF07894 | 284 | DUF1669: Protein of unknown function (DUF1669); In | 97.71 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 97.63 | |
| smart00155 | 28 | PLDc Phospholipase D. Active site motifs. Phosphat | 97.6 | |
| TIGR03705 | 672 | poly_P_kin polyphosphate kinase 1. Members of this | 97.38 | |
| PF13918 | 177 | PLDc_3: PLD-like domain | 97.37 | |
| PLN02866 | 1068 | phospholipase D | 97.18 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.16 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 97.09 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 96.81 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 96.69 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 96.68 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 96.62 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.61 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 96.15 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 96.12 | |
| PF11495 | 233 | Regulator_TrmB: Archaeal transcriptional regulator | 96.07 | |
| PF07894 | 284 | DUF1669: Protein of unknown function (DUF1669); In | 95.98 | |
| PLN02352 | 758 | phospholipase D epsilon | 95.9 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 95.55 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 95.16 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.15 | |
| PLN03008 | 868 | Phospholipase D delta | 95.15 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 95.08 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 94.97 | |
| PLN02270 | 808 | phospholipase D alpha | 94.83 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 94.38 | |
| COG0855 | 696 | Ppk Polyphosphate kinase [Inorganic ion transport | 94.34 | |
| COG3886 | 198 | Predicted HKD family nuclease [DNA replication, re | 93.69 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 90.95 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 90.71 | |
| PF13090 | 352 | PP_kinase_C: Polyphosphate kinase C-terminal domai | 87.87 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 87.7 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 87.47 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 86.06 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 84.23 | |
| PF09565 | 296 | RE_NgoFVII: NgoFVII restriction endonuclease; Inte | 83.95 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 82.66 | |
| PF13090 | 352 | PP_kinase_C: Polyphosphate kinase C-terminal domai | 82.53 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 81.59 |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-185 Score=1576.15 Aligned_cols=821 Identities=62% Similarity=1.105 Sum_probs=751.0
Q ss_pred ceeeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCC------cc------ccCCCCCCCCcCCCcEEEEEECCe
Q 045478 22 PVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPF------KK------TRGLSGRHSMITSNPYVSVCLSGA 89 (852)
Q Consensus 22 ~~~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~------~~------~~~~~~~~~~~~sdpYv~v~l~~~ 89 (852)
.+||||+|+++|++|++|++||+++++++++|..+..|.... ++ .|..++++..++|||||+|.++++
T Consensus 9 ~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~ 88 (868)
T PLN03008 9 VMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQA 88 (868)
T ss_pred eEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCc
Confidence 468999999999999999999999998998887544333221 11 122345567888999999999999
Q ss_pred eEEEeeeecCCCCCeeeeEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCC
Q 045478 90 TVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFP 169 (852)
Q Consensus 90 ~~~rT~vi~~s~nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g 169 (852)
+++||+++.++.||+|||+|+|+|+|+.+.|+|+|||+|.+++++||++.||++++..|+.++.|++|++..++|+|+++
T Consensus 89 rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~ 168 (868)
T PLN03008 89 TLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAET 168 (868)
T ss_pred ceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeecCCcccccCCCCCCCCCCCCCccCccccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHH
Q 045478 170 QLHVSMQYKPIGQIPLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAV 249 (852)
Q Consensus 170 ~l~l~l~f~~~~~~~~~~~gv~~~~~~~g~~~~~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI 249 (852)
+|+|+|+|+|+++++.|..||++++++.|+|.+|||+|+||+|+||||||++++|+|.|.|.||+.|+|..||++|++||
T Consensus 169 kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwedi~~AI 248 (868)
T PLN03008 169 AIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICYAI 248 (868)
T ss_pred EEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHHHHHHH
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHH
Q 045478 250 LEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETR 329 (852)
Q Consensus 250 ~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~ 329 (852)
++||++|||++||++|+++|+|++.. +.+.+.+|+++|++||+|||+|+|||||+.+|+..++++..|+|.+|+++++
T Consensus 249 ~~Ak~~IyI~gWsl~~ei~L~R~~~~--~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thdeet~ 326 (868)
T PLN03008 249 SEAHHMIYIVGWSIFHKIKLVRETKV--PRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDEETR 326 (868)
T ss_pred HhhhheEEEeceeecceeEEecCCCC--CCCCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccHHHH
Confidence 99999999999999999999998742 3334689999999999999999999999999987777889999999999999
Q ss_pred hhhcCCCCEEEecCCCCCCcchhhhhc-----------cccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCC
Q 045478 330 KFFKHSSVNCVLAPRYASNKLSIFKQQ-----------VVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDT 398 (852)
Q Consensus 330 ~~l~~~gv~v~~~~~~~~~~~~~~~~~-----------~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt 398 (852)
++|++++|.|.++|++++.+.+++++. ..+++|+||||+||||+++++++|+++|||||+|||+|||||
T Consensus 327 ~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gRwDT 406 (868)
T PLN03008 327 KFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDT 406 (868)
T ss_pred HhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccCCccCC
Confidence 999999999999999988888887763 345789999999999998788899999999999999999999
Q ss_pred CCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhhhhhh--hhhccccccccccc
Q 045478 399 PEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWRE--FRLKKVTHWYDDSL 476 (852)
Q Consensus 399 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~--~~~~~~~~~~~~~~ 476 (852)
+.|++++++++.|++||+||++.++.+.|++||||+|++|+||||++|+.+|.+||+.+++... .+.++...|.++.|
T Consensus 407 ~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~~~d~l 486 (868)
T PLN03008 407 PEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDDAL 486 (868)
T ss_pred cCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccccccchh
Confidence 9999999999999999999998877788999999999999999999999999999999988542 12334456778889
Q ss_pred ccccccCCCCCCCCCC-------------CCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccc
Q 045478 477 INLDRIGITPSTGPHS-------------YKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKV 543 (852)
Q Consensus 477 ~~~~~~~~~~~~~P~~-------------~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 543 (852)
+.+.++++++. |.. .+.......+++++|.+|+|||++.|++.+||..++++..++|+||++..+
T Consensus 487 ~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~~i 564 (868)
T PLN03008 487 IRIGRISWILS--PVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLVV 564 (868)
T ss_pred cchhhcccccC--CCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhccccccccch
Confidence 99988887653 210 011111113567899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCch
Q 045478 544 DKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSA 623 (852)
Q Consensus 544 e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~ 623 (852)
|+||++||++||++||||||||||||++++++|+.+++.++.|+|+++++++|+++++++++|+|+||+|+||||++.++
T Consensus 565 e~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~~sg 644 (868)
T PLN03008 565 DKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPKSG 644 (868)
T ss_pred hhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEE
Q 045478 624 AVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVH 703 (852)
Q Consensus 624 ~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 703 (852)
++|+|++||++||+++|.+|+++|+++|... +|.+|++|||||+++...... ++.+++.+..+|++|+++||||
T Consensus 645 ~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~--~p~dyl~fy~L~~~e~~~~~~----~~~~~~~~~~a~~~rr~~IYvH 718 (868)
T PLN03008 645 PVQEILYWQSQTMQMMYDVIAKELKAVQSDA--HPLDYLNFYCLGKREQLPDDM----PATNGSVVSDSYNFQRFMIYVH 718 (868)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CccCEEEEecccccccccCCC----CCCCCchhhhhhhccceeEEEe
Confidence 9999999999999999999999999988754 799999999999998763322 2344566778899999999999
Q ss_pred eeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCcccccccCCCCCcchHHHHHHHHHHhcCCCccccCCCCchHH
Q 045478 704 AKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLEC 783 (852)
Q Consensus 704 SKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~~~~~~~~~~g~~~~lR~~Lw~ehlG~~~~~~~~p~~~~~ 783 (852)
||+|||||++++|||||||+|||.++||||+++.++++.++|++..+.++|+|++||++||+||||+.++.|.+|++++|
T Consensus 719 sK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sLwaEHLG~~~~~~~~p~s~ec 798 (868)
T PLN03008 719 AKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSDLEC 798 (868)
T ss_pred eeEEEECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHHHHHHhCCCHHHccCCCCHHH
Confidence 99999999999999999999999999999999999999999876677899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhhccccccceeccceeeCCCCCcccCCCCCCCCCCCCcccccCC-CCCCCCCC
Q 045478 784 MQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPT-SLPDALTT 852 (852)
Q Consensus 784 ~~~~~~~a~~n~~~~~~~~~~~~~g~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 852 (852)
++++|++|++||++|+++++++|+|||++||+.|+.||+++++||+++||||+|+|||+++ +||++|||
T Consensus 799 v~~vn~~a~~~w~~y~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~lp~~ltt 868 (868)
T PLN03008 799 LKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868 (868)
T ss_pred HHHHHHHHHHHHHHhhccccccCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999997
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-176 Score=1504.67 Aligned_cols=793 Identities=46% Similarity=0.835 Sum_probs=714.8
Q ss_pred CCceeeeeEEEEEEEEecCCCCCCCcchhhhcccccCCc-ccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeec
Q 045478 20 DEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGH-CRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVIS 98 (852)
Q Consensus 20 ~~~~~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~ 98 (852)
|+.+||||+|+|+|++|++|+|++. .+.+++++..+.. |. ...+++||||+|.+++++++||+++.
T Consensus 1 ~~~~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~y~tv~~~~a~v~rtr~~~ 67 (808)
T PLN02270 1 MAQILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVG------------VGKGESQLYATIDLEKARVGRTRKIE 67 (808)
T ss_pred CcceeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhcc------------CCCCCCCceEEEEeCCcEEEEEeecC
Confidence 5567999999999999999999755 3334443332210 00 11235999999999999999999999
Q ss_pred CC-CCCeeeeEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 99 NC-ENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 99 ~s-~nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
|. .||+|+|+|+++|+|++++|+|+|||+|.+|+++||+++||+++|.+|+.+++||++++..|+|++++.+|+++++|
T Consensus 68 ~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f 147 (808)
T PLN02270 68 NEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQY 147 (808)
T ss_pred CCCCCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEE
Confidence 84 69999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcccccCCCCCCCCCCCCCccCccccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEE
Q 045478 178 KPIGQIPLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIY 257 (852)
Q Consensus 178 ~~~~~~~~~~~gv~~~~~~~g~~~~~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~ 257 (852)
+|++.++.|.+|+.+ +++.|++.+|||+|+||+||||||||++++|+|.|+|.+|+.|++..||+++++||.+||++||
T Consensus 148 ~~~~~~~~~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~Iy 226 (808)
T PLN02270 148 FEVTKDRNWGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIY 226 (808)
T ss_pred EEcccCcchhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcEEE
Confidence 999999999999976 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHHhhhcCCCC
Q 045478 258 IIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSV 337 (852)
Q Consensus 258 I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv 337 (852)
|++|+|+++++|+|++.++.+. ...+|+++|++||++||+|+||+||+.++... ++..|+|.||+++++++|++.+|
T Consensus 227 I~GW~~d~~i~LvRd~~~p~~~-~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~--~k~~g~m~thd~~t~~~f~~~~V 303 (808)
T PLN02270 227 ITGWSVYTEISLVRDSRRPKPG-GDVTIGELLKKKASEGVRVLLLVWDDRTSVDL--LKKDGLMATHDEETENFFRGTDV 303 (808)
T ss_pred EEEeecCCCceEecCCCCCCCC-CcchHHHHHHHHhcCCCEEEEEEEcCcccchh--hccccccccCHHHHHHHhccCCc
Confidence 9999999999999987555543 35799999999999999999999999877542 45678999999999999999999
Q ss_pred EEEecCCCCCCcchhhhhccccccccCccceEEecCCCCC---CCCceEEEEcccCCCCCccCCCCcCCCCCCcccccCC
Q 045478 338 NCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASG---NNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFAND 414 (852)
Q Consensus 338 ~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~---~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~~~d 414 (852)
+|++++++|+.+.+++.+...++.++||||+||||+++++ ++|+++|||||+|||+|||||++|++|++|++.|++|
T Consensus 304 ~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~D 383 (808)
T PLN02270 304 HCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDD 383 (808)
T ss_pred eEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCcccccccccccccccc
Confidence 9999999998777676666677889999999999997443 5899999999999999999999999999999999999
Q ss_pred CCCCCCCC---CCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhhhhhhhhhcccccccccccccccccCCCCCCCCC
Q 045478 415 FHNPSLPS---HAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPH 491 (852)
Q Consensus 415 ~~n~~~~~---~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 491 (852)
|+||.|.+ +.++||+||||+|++|+||+|++|+.+|++||+.+++... ++.+.+++++.. |+
T Consensus 384 f~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~l-------------l~~~~~~~~~~~--P~ 448 (808)
T PLN02270 384 FHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDI-------------LVQLRELEDVII--PP 448 (808)
T ss_pred ccCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccc-------------hhhhcccccccC--CC
Confidence 99998863 6778999999999999999999999999999999877531 122222222211 22
Q ss_pred CCCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeeccccc
Q 045478 492 SYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIG 571 (852)
Q Consensus 492 ~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~ 571 (852)
. ....+++.++|+||+|||++.+++.+||..+++++.+|+++|++...++||+.+|++||++||||||||||||++
T Consensus 449 ~----~~~~p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~s 524 (808)
T PLN02270 449 S----PVMFPDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLG 524 (808)
T ss_pred C----cccCCCcCCccccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhh
Confidence 1 011135567899999999999999999999999999999999988889999999999999999999999999999
Q ss_pred CCCCCCcc----ccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 045478 572 SSYHWPSY----KNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQAL 647 (852)
Q Consensus 572 ~~~~wp~~----~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L 647 (852)
++++|+.+ ++.++.|+||++|+++|+++++++++|+|+||+|+||||.+++.++|+||+||++||+++|.+|+++|
T Consensus 525 ss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~vq~il~wq~~TM~~~~~~I~~~L 604 (808)
T PLN02270 525 SSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQAL 604 (808)
T ss_pred hhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999755 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCCCCCCceEEeeCCCCCCCC-CCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCC
Q 045478 648 QDNGLSNKYHPQDYLSFYCLGKREAPP-LDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSL 726 (852)
Q Consensus 648 ~~~Gv~~~~~p~~y~~f~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm 726 (852)
+++|+.. +|.+||+||||+|||... ++|.|...+.+++.+..+|++++++||||||+|||||++++|||||||+|||
T Consensus 605 k~~g~~~--dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd~~~~iGSaN~n~rS~ 682 (808)
T PLN02270 605 RAKGLEE--DPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSM 682 (808)
T ss_pred HHcCccC--CccceEEEEeccccccccCcccCCccCCcccchhhhhhhccceeEEEeeeEEEEcCCEEEEeccccccccc
Confidence 9999864 899999999999999754 6787765666677788899999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEecCcccccccCCCCCcchHHHHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHHhHHHHhhhhc-cc
Q 045478 727 EGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVNRIAGENWKAFVCDAH-KE 805 (852)
Q Consensus 727 ~~n~DsEi~v~i~d~~~~~~~~~~~~~g~~~~lR~~Lw~ehlG~~~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~-~~ 805 (852)
.|+|||||+|..++|.++.+ ...++|+|++||++||+||||+.++.|.+|+|++|++++|++|++||++|+++++ .+
T Consensus 683 ~G~rDSEIam~a~qp~~~~~--~~~~r~~i~~~R~~Lw~EHLG~~~~~f~~p~s~~cv~~v~~~a~~~w~~y~~~~~~~~ 760 (808)
T PLN02270 683 DGARDSEIAMGGYQPYHLST--RQPARGQIHGFRMSLWYEHLGMLDETFLDPESEECIQKVNQIADKYWDLYSSETLEHD 760 (808)
T ss_pred cCCccchhhhcccCcccccc--ccchHHHHHHHHHHHHHHHhCCChhHhhCCCcHHHHHHHHHHHHHHHHHhcccccCCC
Confidence 99999999999999987743 2467899999999999999999999999999999999999999999999999999 58
Q ss_pred cccceeccceeeCCCCCcccCCCCCCCCCCCCcccccCC-CCCCCCCC
Q 045478 806 MRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPT-SLPDALTT 852 (852)
Q Consensus 806 ~~g~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 852 (852)
|+|||++||+.|+.||++++|||+++||||+|+|||+++ +||++|||
T Consensus 761 ~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~~p~~ltt 808 (808)
T PLN02270 761 LPGHLLRYPIGVASEGDITELPGTEFFPDTKARVLGAKSDYLPPILTT 808 (808)
T ss_pred CCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 999999999999999999999999999999999999999 99999997
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-167 Score=1434.25 Aligned_cols=741 Identities=42% Similarity=0.745 Sum_probs=654.2
Q ss_pred eeeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCC
Q 045478 23 VFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCEN 102 (852)
Q Consensus 23 ~~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~n 102 (852)
-+|||+|++||++|+-+ ..++..+..|.. ..+|||+|.+++++|+|| .++.|
T Consensus 6 ~~lhg~l~~~i~~~~~~----------~~~~~~~~~~~~---------------~~~~y~tv~~~~~~v~rt---~~~~~ 57 (758)
T PLN02352 6 KFFHGTLEATIFDATPY----------TPPFPFNCIFLN---------------GKATYVTIKIGNKKVAKT---SHEYD 57 (758)
T ss_pred cccccceEEEEEEeeeh----------hhcccccccccC---------------CCCceEEEEeCCcEEecC---CCCCC
Confidence 47999999999999821 122221111111 149999999999999999 67779
Q ss_pred CeeeeEEEEeecCCC-ceEEEEEEecCCCCCceeeeEeeeceeccCCCc-eeeeeeeccCCCCCCCCCCEEEEEEEeeec
Q 045478 103 PFWDEHFCVPVAHSV-VNLEFHVKDNDILGAELIGVVQIPVEKILCGNE-VDDWFPIAGSYGKNLKPFPQLHVSMQYKPI 180 (852)
Q Consensus 103 P~WnE~f~~~~~~~~-~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~-~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~ 180 (852)
|+|+|+|+++|+|.+ ++|+|+||| ++++||+++||+++|..|+. +++||++++..|+|+++ .+|+++++|+|+
T Consensus 58 p~w~e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~ 132 (758)
T PLN02352 58 RVWNQTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPA 132 (758)
T ss_pred CccccceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEh
Confidence 999999999999999 899999999 68899999999999999976 99999999999999865 999999999999
Q ss_pred CCcccccCCCCCCCCCCCCCccCccccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEEEEE
Q 045478 181 GQIPLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIG 260 (852)
Q Consensus 181 ~~~~~~~~gv~~~~~~~g~~~~~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~ 260 (852)
++++.|..|+.+ +++.|++.+|||+|+||+|+||||||++++|+|.|.| .|.+++||++|++||++||++|||++
T Consensus 133 ~~~~~~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI~~Ar~sI~I~g 207 (758)
T PLN02352 133 ELEPTWCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAIEGAKHLIYIAG 207 (758)
T ss_pred hhCcchhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHHHhhccEEEEEE
Confidence 999999999977 7999999999999999999999999999999999998 56778999999999999999999999
Q ss_pred eecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHHhhhcCCCCEEE
Q 045478 261 WSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCV 340 (852)
Q Consensus 261 w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~ 340 (852)
|+|+++++|+|++.++.+.+.+.+|+++|++||++||+|+||+||+.+|... ++..|+|.++++++.+++++.+|+|.
T Consensus 208 W~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~~~~g~m~th~~~~~~~f~h~~V~~~ 285 (758)
T PLN02352 208 WSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNKGVMGTHDEDAFAYFKHTKVVCK 285 (758)
T ss_pred EEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--cccccccccchHHHHhhccCCceEEe
Confidence 9999999999987554444456899999999999999999999999987643 45678899999999999999999999
Q ss_pred ecCCCCCCcchhhhhccccccccCccceEEecCCCCC--CCCceEEEEcccCCCCCccCCCCcCCCCCCccc-ccCCCCC
Q 045478 341 LAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASG--NNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTV-FANDFHN 417 (852)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~--~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~-~~~d~~n 417 (852)
++|+.+. ..++.|+||||+||||+++++ ++|+++|||||+|||+|||||++|++++++++. |++||+|
T Consensus 286 l~pr~~~---------~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~Df~~ 356 (758)
T PLN02352 286 LCPRLHK---------KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQ 356 (758)
T ss_pred ecccccc---------ccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCcccccccccccccccc
Confidence 9987643 235679999999999997544 578899999999999999999999999999886 5699999
Q ss_pred CCCC---CCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhhhhhhhhhcccccccccccccccccCCCCCCCCCCCC
Q 045478 418 PSLP---SHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYK 494 (852)
Q Consensus 418 ~~~~---~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 494 (852)
+.|. .+.++||+||||+||+|+||||+||.+||+||||++++.. .+++..+++++.. +|.
T Consensus 357 ~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~-------------~l~p~~~~~~~~~-~p~--- 419 (758)
T PLN02352 357 TSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS-------------VLVPTSSIRNLVH-QPG--- 419 (758)
T ss_pred cccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc-------------ccCCccccccccc-CCC---
Confidence 9886 3668899999999999999999999999999999987642 1111111221110 011
Q ss_pred CCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeecccccCCC
Q 045478 495 PTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSY 574 (852)
Q Consensus 495 ~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~ 574 (852)
.+....++|+||++||++.|++.+||.. ...|+||++||++||++||||||||||||+++++
T Consensus 420 ----~~~~~~~~w~VQv~RSid~~sa~~~P~~--------------~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~ 481 (758)
T PLN02352 420 ----SSESNNRNWKVQVYRSIDHVSASHMPRN--------------LPVERSIHEAYVEAIRRAERFIYIENQYFIGGCH 481 (758)
T ss_pred ----CCcccCCcccceEEEecCccccccCCCC--------------CchhhHHHHHHHHHHHhhhhEEEEehhhhhcccc
Confidence 1123567899999999999999888752 2358999999999999999999999999999999
Q ss_pred CCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q 045478 575 HWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSN 654 (852)
Q Consensus 575 ~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~ 654 (852)
.|+++++.++.|+|+++|+++|+++++++++|+|+||+|+||+|.+++.++|+||+||++||+++|..|.++|+++|...
T Consensus 482 ~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IViP~~PeG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~ 561 (758)
T PLN02352 482 LWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPG 561 (758)
T ss_pred ccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCCCCCceEEeeCCCCCCCC-CCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCCCCCCCce
Q 045478 655 KYHPQDYLSFYCLGKREAPP-LDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTE 733 (852)
Q Consensus 655 ~~~p~~y~~f~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~~n~DsE 733 (852)
+|.+||+||||+||+... ++|.+...|...+.+..+++.++++||||||+|||||++++|||||||+|||.|+||||
T Consensus 562 --~P~dYl~F~cL~n~e~~~~g~~~~~~~p~~~~~~~~~~~~rr~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSE 639 (758)
T PLN02352 562 --HPRDYLNFFCLANREEKRKGEFVPPYSPHQKTQYWNAQKNRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTE 639 (758)
T ss_pred --ChhHheeeecccccccccCCccccccCCCCCchhhhcccccceeEEEeeeEEEEcCcEEEEcccccccccccCcccch
Confidence 899999999999998763 45544444455555667778888999999999999999999999999999999999999
Q ss_pred eEEEEecCcccccccCCCCCcchHHHHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHHhHHHHhhhhcccccc-ceec
Q 045478 734 IAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVNRIAGENWKAFVCDAHKEMRG-HLMQ 812 (852)
Q Consensus 734 i~v~i~d~~~~~~~~~~~~~g~~~~lR~~Lw~ehlG~~~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~~~~~g-~l~~ 812 (852)
|+|++++++++. .....+++++||++||+||||+.++.|.+|+|+||++++|++|++||++|+++++++|+| ||++
T Consensus 640 ia~~~~~~~~~~---~~~~~~~i~~~R~~L~~EHLG~~~~~f~~p~s~ec~~~v~~~~~~~w~~y~~~~~~~~~g~hl~~ 716 (758)
T PLN02352 640 IAIGCYQSKNGT---NTNNPRDIQAYRMSLWYEHTGLDEESFLEPESLECVRRLRTIGEQMWEIYSGEEVVDMEGVHLVN 716 (758)
T ss_pred hhhcccccccCC---CcccchHHHHHHHHHHHHHhCCCHHHhcCCCCHHHHHHHHHHHHHHHHhhccchhccCCCccccc
Confidence 999999997652 234468999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cceeeCCCCCcccC-CCCCCCCCCCCcccccCC-CCCCCCCC
Q 045478 813 YPVQISREGKVSTL-PGYDTFPDVGGKILGAPT-SLPDALTT 852 (852)
Q Consensus 813 ~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~ 852 (852)
||+.|+.||++++| ||+++||||+|+|||+++ +||++|||
T Consensus 717 yp~~v~~~g~v~~l~~g~~~fpd~~~~v~g~~~~~~p~~lt~ 758 (758)
T PLN02352 717 YPISVTKDGAVEDLADGDGNFPDTKTPVKGRRSKMLPPVFTT 758 (758)
T ss_pred CCeEecCCcceeecCCCCcCCCCCCCceeccccccCCccccC
Confidence 99999999999999 699999999999999999 99999997
|
|
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-147 Score=1253.24 Aligned_cols=760 Identities=45% Similarity=0.745 Sum_probs=672.8
Q ss_pred CceeeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCC-Cc-----cccC-----CCCCCCCcCCCcEEEEEECCe
Q 045478 21 EPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFP-FK-----KTRG-----LSGRHSMITSNPYVSVCLSGA 89 (852)
Q Consensus 21 ~~~~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~-~~-----~~~~-----~~~~~~~~~sdpYv~v~l~~~ 89 (852)
...|+||+|+++|+.+..++++..+..+.+..+..+..++.. .. +..+ ...+++..++++|+++.+...
T Consensus 70 ~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~Ylt~~l~~~ 149 (887)
T KOG1329|consen 70 TVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLENYLTVVLHKA 149 (887)
T ss_pred eeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcccchhhhhhccchheeeechh
Confidence 335899999999999999999988777555444443311111 10 1111 111234455799999999999
Q ss_pred eEEEeeeecCC-CCCeeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCC
Q 045478 90 TVAQTRVISNC-ENPFWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKP 167 (852)
Q Consensus 90 ~~~rT~vi~~s-~nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~ 167 (852)
++++|+.+.+. .+|.|.+.|++.++|....++++|++.+..| +.++|.+++|+..+.+|..+.+|+++++.++++.++
T Consensus 150 ~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~~~~~~ 229 (887)
T KOG1329|consen 150 RYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDGKPHQK 229 (887)
T ss_pred hhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCCccccC
Confidence 99999999987 9999999999999999999999999999999 999999999999999999999999999999999888
Q ss_pred CCEEEEEEEeeecCCcccccCCCCCCCCCCCCCccCccccccceeEEeecccCCCCCCCcEEecCCc-ccchhhhHHHHH
Q 045478 168 FPQLHVSMQYKPIGQIPLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGK-TFRHGQCWEEIC 246 (852)
Q Consensus 168 ~g~l~l~l~f~~~~~~~~~~~gv~~~~~~~g~~~~~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~-~y~~~~~~~~l~ 246 (852)
+..+.++++|++.+....|..++..++.+.|++.++++++.||.|++|+|+|+.++|.|.+.+++|+ .|.+..||++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~~edi~ 309 (887)
T KOG1329|consen 230 GSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKYWEDVA 309 (887)
T ss_pred CcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 677789999999
Q ss_pred HHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcH
Q 045478 247 HAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDE 326 (852)
Q Consensus 247 ~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~ 326 (852)
+||++||+.|||++||++|++||+|+... ..+.+|+++|++||++||+|+|||||++++.... +++++
T Consensus 310 dAI~~Ar~~IyItgWwl~pel~L~Rp~~~----~~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~i--------~S~~~ 377 (887)
T KOG1329|consen 310 DAIENARREIYITGWWLSPELYLVRPPKG----PNDWRLDELLKRKAEEGVRVLILVWKDVTSALGI--------NSHYE 377 (887)
T ss_pred HHHHhhhhEEEEeccccCceEEEEccCCC----CCceEHHHHHHHHHhCCcEEEEEEeccchhcccc--------CchhH
Confidence 99999999999999999999999998632 2368999999999999999999999999875422 35678
Q ss_pred HHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCC
Q 045478 327 ETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGD 406 (852)
Q Consensus 327 ~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~ 406 (852)
++..+++|++|+|.+||+++.+.. .++|+||||+||||++ +|||||+|||+|||||++|+|+|+
T Consensus 378 k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~eH~L~d~ 441 (887)
T KOG1329|consen 378 KTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPEHPLFDT 441 (887)
T ss_pred HHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCCcccccccc
Confidence 899999999999999999876431 3679999999999998 999999999999999999999999
Q ss_pred CcccccCCCCCCCCC-----CCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhhhhhhhhhcccccccccccccccc
Q 045478 407 LNTVFANDFHNPSLP-----SHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDR 481 (852)
Q Consensus 407 ~~~~~~~d~~n~~~~-----~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (852)
+.++|++||+||+|. ++.++||||||||||+|.||+|+||++||+||||++...+. + .++.+..+..
T Consensus 442 ~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~-~-------~~~~~p~L~p 513 (887)
T KOG1329|consen 442 LQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKK-P-------YDDSLPLLLP 513 (887)
T ss_pred ccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccC-C-------CCccceeecC
Confidence 999999999999987 68899999999999999999999999999999999876541 0 0112222212
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhccce
Q 045478 482 IGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHF 561 (852)
Q Consensus 482 ~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~ 561 (852)
.+++.. |+ ...+.+++.|++|++||++.+++.+ +.....+|+.|++...+|+||++||+++|++||||
T Consensus 514 ~~~~~~--~~------~~~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~e~SIq~AYv~~Ir~a~hF 581 (887)
T KOG1329|consen 514 ISDITG--PS------EPNEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEIEDSIQNAYVKAIRNAEHF 581 (887)
T ss_pred hhhhcC--CC------CccccccccccccceeeccCCcccc----hHHhhhhcccccCCCchHHHHHHHHHHHHHhccce
Confidence 222111 11 1125577889999999999887655 56777889999999889999999999999999999
Q ss_pred EEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC--CC--CCCchhHHHHHHHHHHHHH
Q 045478 562 IYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWP--EG--NPNSAAVQEILYWQGQTMS 637 (852)
Q Consensus 562 IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~p--eg--~~~~~~~~~~~~~~~~t~~ 637 (852)
||||||||++++..|.. ..|.++++||++|++|+++++.|+||||||+|| || .+.+.++|+||+||++||+
T Consensus 582 IYIENQfFi~ss~~~~~-----~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p~~~svqaIl~wQyrTms 656 (887)
T KOG1329|consen 582 IYIENQFFIGSSFNWDS-----VLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTPGSGSVQAILHWQYRTMS 656 (887)
T ss_pred EEEeeeeEEeeccCCCc-----ccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCCCcchHHHHHHHHHHHHh
Confidence 99999999999987754 478889999999999999999999999999999 99 7888899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEec
Q 045478 638 MMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMG 717 (852)
Q Consensus 638 ~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIG 717 (852)
+||++|+++|++.|++- .+|.+|++|+|+++++.. +++.++|+||||||+|||||+++|||
T Consensus 657 ~g~~sI~~~Lka~g~d~-~~yi~f~~lr~~g~~e~~------------------~~~~~~emIYVHsK~mIvDD~~vIIG 717 (887)
T KOG1329|consen 657 MGYKSIYKALKAVGLDP-ADYIDFLGLRCLGNREEQ------------------AQRLRREMIYVHSKLMIVDDEYVIIG 717 (887)
T ss_pred hhHHHHHHHHHHhcCCc-cccceeeeeeeeeccccc------------------cccceEEEEEEeeeeEEecCCEEEEe
Confidence 99999999999999984 278899999999888641 23567899999999999999999999
Q ss_pred CcCcccCCCCCCCCceeEEEEecCcccccccCCCCCcchHHHHHHHHHHhcCCCccccCCCCchHHHHHHHHHHHHhHHH
Q 045478 718 SANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFREPQSLECMQRVNRIAGENWKA 797 (852)
Q Consensus 718 SANln~RSm~~n~DsEi~v~i~d~~~~~~~~~~~~~g~~~~lR~~Lw~ehlG~~~~~~~~p~~~~~~~~~~~~a~~n~~~ 797 (852)
|||||+|||.|+|||||||+++|+.++++.....+.||+++|||+||+||||..++.|++|++.+|.+.++...+++|..
T Consensus 718 SANINqRSm~G~RDSEIA~~~~d~~~~~s~m~g~p~~f~~~lR~slw~EHLG~~~d~~~~Pe~~ec~dpv~d~~~~~W~~ 797 (887)
T KOG1329|consen 718 SANINQRSMLGNRDSEIAMGIYDTNHVWSKMNGRPYGFIYGLRMSLWREHLGLLDDAFEEPESLECEDPVRDLFEDLWQR 797 (887)
T ss_pred ecccchhhccCCccceeEEEEecccchhhccCCcchhHHHHHHHHHHHHHhCCCcccccCcchhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999988888888899999999999999999999999999999999999999999999
Q ss_pred HhhhhccccccceeccceeeCCCCCcccCCCCCCCCCCCCcccccCC-CCCCCCCC
Q 045478 798 FVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPT-SLPDALTT 852 (852)
Q Consensus 798 ~~~~~~~~~~g~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 852 (852)
|+++..+.++|||+.||+++..+|++.++||.+.|||+++++.|.++ ++|++||+
T Consensus 798 ~a~~n~~~y~~~f~~yP~~~~~~g~~~~~~~~~~~pd~~~~~~~~~~~~~~~~lt~ 853 (887)
T KOG1329|consen 798 YAARNTTIYEGHFRCYPIDVVRTGKVTELPGDETFPDTLGKIIGSKSDALPENLTT 853 (887)
T ss_pred HHhhhhhhhhceEEEcccccccCcceeecCCccccccccccccccccccCCccccc
Confidence 99999999999999999999999999999999999999999999999 99999986
|
|
| >PLN02866 phospholipase D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-97 Score=864.39 Aligned_cols=534 Identities=30% Similarity=0.462 Sum_probs=409.4
Q ss_pred ccCcccc----ccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCC
Q 045478 201 KTYFPLR----KEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKP 276 (852)
Q Consensus 201 ~~~~p~~----~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~ 276 (852)
.+|+|++ .||.+++|.|| +++|++|++||++||++|+|++|||+|++||+|++
T Consensus 321 ~SFAP~r~~~~~gN~vk~LvDG--------------------~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~--- 377 (1068)
T PLN02866 321 GSFAPPRGLTEDGSQAQWFIDG--------------------HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPF--- 377 (1068)
T ss_pred CCcCCCccccCCCCEEEEEeCH--------------------HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecC---
Confidence 5799998 69999999998 78899999999999999999999999999999852
Q ss_pred CCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHHhhh--cCCCCEEEecCCCCCCcchhhh
Q 045478 277 LPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFF--KHSSVNCVLAPRYASNKLSIFK 354 (852)
Q Consensus 277 ~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l--~~~gv~v~~~~~~~~~~~~~~~ 354 (852)
.+..+.+|+++|++||++||+||||+||++++.... . +..+.+.| .++||+|..+|... .
T Consensus 378 -~D~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~--~--------S~~~k~~L~~lh~gI~V~r~P~~~----~--- 439 (1068)
T PLN02866 378 -HDHESSRLDSLLEAKAKQGVQIYILLYKEVALALKI--N--------SVYSKRRLLGIHENVKVLRYPDHF----S--- 439 (1068)
T ss_pred -CCchHHHHHHHHHHHHHCCCEEEEEEECcccccccc--C--------chhhHHHHHHhCCCeEEEecCccc----c---
Confidence 124578999999999999999999999998642210 0 11222222 37899987554321 0
Q ss_pred hccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCCCcccc-cCCCCCCCCC------------
Q 045478 355 QQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVF-ANDFHNPSLP------------ 421 (852)
Q Consensus 355 ~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~-~~d~~n~~~~------------ 421 (852)
....+||||||+||||++ +||+||+|||.|||||++|++.|....+| ++||.|++..
T Consensus 440 --~~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ 509 (1068)
T PLN02866 440 --SGVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDE 509 (1068)
T ss_pred --cCcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCcccccccccccccccccccccc
Confidence 123678999999999998 99999999999999999999988655544 5799888642
Q ss_pred -CCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhhhhhhhhhcccccc------------cc---------------
Q 045478 422 -SHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHW------------YD--------------- 473 (852)
Q Consensus 422 -~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~------------~~--------------- 473 (852)
++...|||||||+||+|+||+|+||+++|++|||++++.+.. .....+| ..
T Consensus 510 ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~-~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~ 588 (1068)
T PLN02866 510 LDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAP-NEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDN 588 (1068)
T ss_pred cccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCc-cccccccccccccccccccccccccccccccccccc
Confidence 456778999999999999999999999999999998875410 0000000 00
Q ss_pred -------ccc---ccccccCCCCCCCCCC-------------------------C-------CC-CC-------------
Q 045478 474 -------DSL---INLDRIGITPSTGPHS-------------------------Y-------KP-TR------------- 497 (852)
Q Consensus 474 -------~~~---~~~~~~~~~~~~~P~~-------------------------~-------~~-~~------------- 497 (852)
++. .....++.+++..+.. . +. +.
T Consensus 589 ~~~~~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 668 (1068)
T PLN02866 589 QKGIARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLS 668 (1068)
T ss_pred cccccccccccccccccccccCCCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 0000111111100000 0 00 00
Q ss_pred --------------------------------CCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchh
Q 045478 498 --------------------------------AGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDK 545 (852)
Q Consensus 498 --------------------------------~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~ 545 (852)
.......+++.+||+||+..||+..- .+|+
T Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~G~~------------------~~E~ 730 (1068)
T PLN02866 669 VKMSSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSAGTS------------------QVEE 730 (1068)
T ss_pred ccccccccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccCCCC------------------chHH
Confidence 00012245689999999988865321 2489
Q ss_pred HHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC--CCC---
Q 045478 546 SIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPE--GNP--- 620 (852)
Q Consensus 546 sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~pe--g~~--- 620 (852)
||++||+++|++|+||||||||||++++.. +..+.|+|+.+|+.+|++|+++++.|+|+||+|++|+ |..
T Consensus 731 SI~~AYi~~I~~A~hfIYIENQFFis~~~~-----~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~ 805 (1068)
T PLN02866 731 SIHAAYCSLIEKAEHFIYIENQFFISGLSG-----DDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDG 805 (1068)
T ss_pred HHHHHHHHHHHhcccEEEEecccccccccc-----cccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCc
Confidence 999999999999999999999999987532 3467999999999999999999999999999999996 433
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeE
Q 045478 621 NSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMI 700 (852)
Q Consensus 621 ~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 700 (852)
.+.+++++|+||++||++++.+|++.|++++.. +|.+|++||+|++++.... ++ ...+++|
T Consensus 806 ~~~svr~Im~~Q~~tI~rG~~Si~~~L~~~~g~---~p~dYisf~~LRn~~~l~~----------~~------~~vteqI 866 (1068)
T PLN02866 806 GAASVRAIMHWQYRTICRGKNSILHNLYDLLGP---KTHDYISFYGLRAYGRLFE----------GG------PLATSQI 866 (1068)
T ss_pred cchhHHHHHHHHHHHHHhhHHHHHHHHHHHhCC---CHHHeEeeecccccccccC----------CC------cccceee
Confidence 345799999999999999999999999985321 7889999999999876410 00 1235689
Q ss_pred EEEeeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCccccccc---CCCCCcchHHHHHHHHHHhcCCCcc---c
Q 045478 701 YVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAK---KSHPRGQVYGYRTSLWAEHLGTLED---T 774 (852)
Q Consensus 701 yvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~~~~~---~~~~~g~~~~lR~~Lw~ehlG~~~~---~ 774 (852)
|||||+|||||++++|||||||+|||.|+|||||+++++|++.+.... .-..++++++||++||+||||+..+ .
T Consensus 867 YVHsK~~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~~s~m~G~~~~ag~fa~~lR~~L~~EHLG~~~~~~~~ 946 (1068)
T PLN02866 867 YVHSKIMIVDDRAALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAGEIDK 946 (1068)
T ss_pred EEEeeEEEEcCcEEEEccccccccccccCcCcceeeeeecccccccccCCccccccchhHHHHHHHHHHHhCCCchhhhc
Confidence 999999999999999999999999999999999999999998763221 1234467999999999999999753 4
Q ss_pred cCCCCchHHHH-HHHHHHHHhHHHHh------------------------------------------------------
Q 045478 775 FREPQSLECMQ-RVNRIAGENWKAFV------------------------------------------------------ 799 (852)
Q Consensus 775 ~~~p~~~~~~~-~~~~~a~~n~~~~~------------------------------------------------------ 799 (852)
+.||.+.++++ .|+..|..|...|.
T Consensus 947 ~~DP~~d~~~k~~W~~~A~~Nt~Iy~~vF~c~P~d~Vr~~~~~~~~~~~~~~~~gh~~i~lg~~~~~~~~~~~~~~~~~~ 1026 (1068)
T PLN02866 947 IIDPVCDTTYKDLWMATAKTNTDIYQDVFSCIPNDLIHSRAALRQSMASRKEKLGHTTIDLGIAPEKLESYENGDIKSSD 1026 (1068)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHhhhcccccCccccccccccccccccccccchhhh
Confidence 67999998996 58999998864431
Q ss_pred -hhhccccccceeccceeeCCCCCcccCCC
Q 045478 800 -CDAHKEMRGHLMQYPVQISREGKVSTLPG 828 (852)
Q Consensus 800 -~~~~~~~~g~l~~~p~~~~~~~~~~~~~~ 828 (852)
.++++.++||||.||+.|++++.++|.-+
T Consensus 1027 ~~~~l~~I~G~lV~fPL~Fl~~E~L~p~~~ 1056 (1068)
T PLN02866 1027 PMERLKSVRGHLVSFPLDFMCQEDLRPVFN 1056 (1068)
T ss_pred HHHHHhhceEEEEechhhhhhhccCCCCcC
Confidence 13467899999999999999997765444
|
|
| >PRK12452 cardiolipin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=455.58 Aligned_cols=336 Identities=26% Similarity=0.310 Sum_probs=249.4
Q ss_pred ccCccccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCC
Q 045478 201 KTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSF 280 (852)
Q Consensus 201 ~~~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~ 280 (852)
.+.+|...||.+++|.|| +++|++++++|++||++|+|++|++.++ .
T Consensus 131 ~~~~p~~~~n~~~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~i~~yi~~~d-------------~ 177 (509)
T PRK12452 131 FGGGPAADRTTTKLLTNG--------------------DQTFSEILQAIEQAKHHIHIQYYIYKSD-------------E 177 (509)
T ss_pred ccCCcccCCCEEEEeCCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEeCC-------------c
Confidence 356888999999999998 7999999999999999999999987552 3
Q ss_pred CcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccc
Q 045478 281 GELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGT 360 (852)
Q Consensus 281 ~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~ 360 (852)
.+..+.++|++||+|||+||||+ |+.||... .....+.|+++||+|..+.+... .++ ....
T Consensus 178 ~g~~i~~aL~~aa~rGV~VRiL~-D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~~---~~~---~~~~ 238 (509)
T PRK12452 178 IGTKVRDALIKKAKDGVIVRFLY-DGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIFS---AWL---LETV 238 (509)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHhCCeEEEEecCccc---ccc---cccc
Confidence 46899999999999999999996 99988531 24567788999999986543211 111 2346
Q ss_pred cccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeC
Q 045478 361 LFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEG 440 (852)
Q Consensus 361 ~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~G 440 (852)
++|||||++|||++ +||+||+|+++ +|.+.. ....+|||+|++++|
T Consensus 239 n~RnHRKi~VIDg~--------ia~~GG~Ni~d-~y~~~~-------------------------~~~~~WrD~~~~i~G 284 (509)
T PRK12452 239 NYRNHRKIVIVDGE--------IGFTGGLNVGD-EYLGRS-------------------------KKFPVWRDSHLKVEG 284 (509)
T ss_pred cCCCCCeEEEEcCC--------EEEeCCcccch-hhcCCC-------------------------CCCCCceEEEEEEEC
Confidence 78999999999999 99999999999 554321 124689999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCC
Q 045478 441 PAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSV 520 (852)
Q Consensus 441 paa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~ 520 (852)
|+|.+++..|.++|+.+++... . ..|.. .. ..++. |. .....+...+|++.+-
T Consensus 285 p~V~~l~~~F~~dW~~~~~~~~---~--~~~~~--~~---~~~~~----~~--------~~~~~~~~~~q~~~sg----- 337 (509)
T PRK12452 285 KALYKLQAIFLEDWLYASSGLN---T--YSWDP--FM---NRQYF----PG--------KEISNAEGAVQIVASG----- 337 (509)
T ss_pred HHHHHHHHHHHHHHHHhhCccc---c--ccccc--cc---chhcC----CC--------ccccCCCeEEEEEeCC-----
Confidence 9999999999999998765310 0 00000 00 00000 10 0011234578988763
Q ss_pred CCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHH
Q 045478 521 KGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKI 600 (852)
Q Consensus 521 ~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~ 600 (852)
|.. .+.+|+++|+++|.+||++|||++|||++ +. .+..++..|
T Consensus 338 ---p~~----------------~~~~i~~~~l~~I~~A~~~I~I~tpYf~p------d~-----------~l~~aL~~A- 380 (509)
T PRK12452 338 ---PSS----------------DDKSIRNTLLAVMGSAKKSIWIATPYFIP------DQ-----------ETLTLLRLS- 380 (509)
T ss_pred ---CCc----------------hhHHHHHHHHHHHHHhhhEEEEECCccCC------CH-----------HHHHHHHHH-
Confidence 111 14689999999999999999999999994 32 233334333
Q ss_pred HcCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCcccc
Q 045478 601 NANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQM 680 (852)
Q Consensus 601 ~~~~~v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~ 680 (852)
+.+||+|+|++|. .+|+. +.+++.+++ ++.|.++|+++ | +|.+
T Consensus 381 -a~rGV~Vrii~p~----~~D~~----~~~~a~~~~-------~~~L~~aGv~I-~-------------------~y~~- 423 (509)
T PRK12452 381 -AISGIDVRILYPG----KSDSI----ISDQASQSY-------FTPLLKAGASI-Y-------------------SYKD- 423 (509)
T ss_pred -HHcCCEEEEEcCC----CCChH----HHHHHHHHH-------HHHHHHcCCEE-E-------------------EecC-
Confidence 2388999999995 33432 334555543 78999999986 2 1332
Q ss_pred chhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCccc
Q 045478 681 NQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYT 744 (852)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~ 744 (852)
.++|+|+|||||++++|||+|||.||+..| .|+++.++|++.+
T Consensus 424 -------------------~~lHaK~~ivD~~~a~vGS~Nld~RS~~~n--~E~~~~i~~~~~~ 466 (509)
T PRK12452 424 -------------------GFMHAKIVLVDDKIATIGTANMDVRSFELN--YEIISVLYESETV 466 (509)
T ss_pred -------------------CCeeeeEEEECCCEEEEeCcccCHhHhhhh--hhccEEEECHHHH
Confidence 589999999999999999999999999855 9999999998543
|
|
| >PRK01642 cls cardiolipin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-48 Score=444.90 Aligned_cols=334 Identities=24% Similarity=0.324 Sum_probs=247.5
Q ss_pred ccCccccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCC
Q 045478 201 KTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSF 280 (852)
Q Consensus 201 ~~~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~ 280 (852)
.+.+|...||+|++|.|| +++|++|+++|++||++|+|++|++.+ + .
T Consensus 107 ~~~~~~~~~n~v~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~l~~yi~~~-------d------~ 153 (483)
T PRK01642 107 LQGIPGLKGNQLRLLTNG--------------------DETFQAIIRDIELARHYILMEFYIWRP-------D------G 153 (483)
T ss_pred ccCCCccCCCEEEEEcCH--------------------HHHHHHHHHHHHHhhcEEEEEEEEEcc-------C------C
Confidence 456788999999999997 789999999999999999999998754 2 3
Q ss_pred CcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccc
Q 045478 281 GELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGT 360 (852)
Q Consensus 281 ~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~ 360 (852)
.+.++.++|.+||+|||+||||+ |+.|+.... .+...+.|++.||++..+.+.. ..++. ....
T Consensus 154 ~g~~i~~aL~~aa~rGV~VriL~-D~~Gs~~~~-----------~~~~~~~L~~~Gi~v~~~~p~~--~~~~~---~~~~ 216 (483)
T PRK01642 154 LGDQVAEALIAAAKRGVRVRLLY-DSIGSFAFF-----------RSPYPEELRNAGVEVVEFLKVN--LGRVF---RRRL 216 (483)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCCC-----------cHHHHHHHHHCCCEEEEecCCC--ccccc---cccc
Confidence 46899999999999999999995 999875421 2336677889999998652211 11111 2346
Q ss_pred cccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeC
Q 045478 361 LFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEG 440 (852)
Q Consensus 361 ~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~G 440 (852)
++|+|+|++|||++ +||+||+|+++.+|.+. .....+|||+|++++|
T Consensus 217 n~RnHrKi~VIDg~--------ia~~Gg~Ni~d~~y~~~-------------------------~~~~~~w~D~~~~i~G 263 (483)
T PRK01642 217 DLRNHRKIVVIDGY--------IAYTGSMNVVDPEYFKQ-------------------------DPGVGQWRDTHVRIEG 263 (483)
T ss_pred ccccCceEEEEcCC--------EEEeCCcccCCHHHhCC-------------------------CCCCCCcEEEEEEEEc
Confidence 78999999999998 99999999999444321 1123689999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCC
Q 045478 441 PAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSV 520 (852)
Q Consensus 441 paa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~ 520 (852)
|+|.+++..|.++|+.+++... ........ .++ ....+...+|++.+-
T Consensus 264 p~v~~l~~~F~~dW~~~~~~~~-------------~~~~~~~~-----~~~---------~~~~~~~~~qi~~sg----- 311 (483)
T PRK01642 264 PVVTALQLIFAEDWEWETGERI-------------LPPPPDVL-----IMP---------FEEASGHTVQVIASG----- 311 (483)
T ss_pred HHHHHHHHHHHHHHHHHhCccc-------------CCCCcccc-----cCC---------ccCCCCceEEEEeCC-----
Confidence 9999999999999998765410 00000000 000 111234578888652
Q ss_pred CCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHH
Q 045478 521 KGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKI 600 (852)
Q Consensus 521 ~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~ 600 (852)
|.. .+..++++|+++|.+||++|||++|||++ +. +...|++.|+
T Consensus 312 ---P~~----------------~~~~~~~~~~~~I~~A~~~I~I~tpYfip------~~---------~i~~aL~~Aa-- 355 (483)
T PRK01642 312 ---PGD----------------PEETIHQFLLTAIYSARERLWITTPYFVP------DE---------DLLAALKTAA-- 355 (483)
T ss_pred ---CCC----------------hhhHHHHHHHHHHHHhccEEEEEcCCcCC------CH---------HHHHHHHHHH--
Confidence 221 14679999999999999999999999994 22 2333444443
Q ss_pred HcCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCcccc
Q 045478 601 NANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQM 680 (852)
Q Consensus 601 ~~~~~v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~ 680 (852)
.+||+|+||+|..+ +.. +.++..+++ ++.|.++|+++ | +|.+
T Consensus 356 --~rGV~Vril~p~~~----d~~----~~~~~~~~~-------~~~L~~~Gv~I-~-------------------~y~~- 397 (483)
T PRK01642 356 --LRGVDVRIIIPSKN----DSL----LVFWASRAF-------FTELLEAGVKI-Y-------------------RYEG- 397 (483)
T ss_pred --HcCCEEEEEeCCCC----CcH----HHHHHHHHH-------HHHHHHcCCEE-E-------------------EeCC-
Confidence 38899999999643 332 344555554 68888999876 2 1322
Q ss_pred chhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCccc
Q 045478 681 NQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYT 744 (852)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~ 744 (852)
.++|||+|||||++++|||+|||.||+..| .|+++.++|++++
T Consensus 398 -------------------~~~HaK~~ivD~~~~~vGS~N~d~rS~~~N--~E~~~~i~d~~~~ 440 (483)
T PRK01642 398 -------------------GLLHTKSVLVDDELALVGTVNLDMRSFWLN--FEITLVIDDTGFA 440 (483)
T ss_pred -------------------CceEeEEEEECCCEEEeeCCcCCHhHHhhh--hcceEEEECHHHH
Confidence 489999999999999999999999999855 9999999998644
|
|
| >PRK11263 cardiolipin synthase 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=421.11 Aligned_cols=342 Identities=20% Similarity=0.263 Sum_probs=245.8
Q ss_pred cccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcch
Q 045478 205 PLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELS 284 (852)
Q Consensus 205 p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~ 284 (852)
+.+.||+|+++.|| +++|++++++|++||++|+|++|+|.++ ..+..
T Consensus 3 ~~~~gN~v~ll~~G--------------------~e~~~~l~~~I~~Ak~~I~i~~yi~~~d-------------~~g~~ 49 (411)
T PRK11263 3 SWREGNRIQLLENG--------------------EQYYPRVFEAIAAAQEEILLETFILFED-------------KVGKQ 49 (411)
T ss_pred cccCCCeEEEEeCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEecC-------------chHHH
Confidence 56799999999998 7999999999999999999999987542 34589
Q ss_pred HHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccC
Q 045478 285 FGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTH 364 (852)
Q Consensus 285 l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~h 364 (852)
|.++|++||+|||+||||+ |..||... ++...+.|.++||++..+.+.+ .++. .....+.++
T Consensus 50 l~~aL~~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~----~~~~-~~~~~~~R~ 111 (411)
T PRK11263 50 LHAALLAAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRP----RLLG-MRTNLFRRM 111 (411)
T ss_pred HHHHHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCcc----cccc-cccccccCC
Confidence 9999999999999999996 99887532 2456778899999998654321 1110 012233599
Q ss_pred ccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHHH
Q 045478 365 HQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAY 444 (852)
Q Consensus 365 HqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~ 444 (852)
|+|++|||++ +||+||+|+++.++.. ....+|+|++++|+||+|.
T Consensus 112 HrKiiVIDg~--------~a~vGg~N~~~~~~~~---------------------------~g~~~w~D~~v~i~Gp~V~ 156 (411)
T PRK11263 112 HRKIVVIDGR--------IAFVGGINYSADHLSD---------------------------YGPEAKQDYAVEVEGPVVA 156 (411)
T ss_pred cceEEEEcCC--------EEEEcCeEchHhhccc---------------------------cCCCCceEEEEEEECHHHH
Confidence 9999999998 9999999999833210 1124799999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCC
Q 045478 445 DILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFP 524 (852)
Q Consensus 445 dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p 524 (852)
+++..|.+.|....... ..|.. ... +. .....+...+|++.+- |
T Consensus 157 ~l~~~f~~~w~~~~~~~-------~~~~~--------~~~-----~~--------~~~~~g~~~~~~v~~~--------p 200 (411)
T PRK11263 157 DIHQFELEALPGQSAAR-------RWWRR--------HHR-----AE--------ENRQPGEAQALLVWRD--------N 200 (411)
T ss_pred HHHHHHHHHHhhcccch-------hhhcc--------ccc-----Cc--------ccCCCCCeEEEEEECC--------C
Confidence 99999999997432110 00000 000 00 0112344467776431 1
Q ss_pred CChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCC
Q 045478 525 KDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANE 604 (852)
Q Consensus 525 ~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~ 604 (852)
. .....|+++|+.+|.+||+.|||+||||++ +. .+..+|..| +.+
T Consensus 201 ~----------------~~~~~i~~~~~~~i~~A~~~I~I~tpYf~p------~~-----------~l~~aL~~A--a~R 245 (411)
T PRK11263 201 E----------------EHRDDIERHYLKALRQARREVIIANAYFFP------GY-----------RLLRALRNA--ARR 245 (411)
T ss_pred c----------------chHHHHHHHHHHHHHHhceEEEEEecCcCC------CH-----------HHHHHHHHH--HHC
Confidence 1 113679999999999999999999999994 22 233334343 238
Q ss_pred CcEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhh
Q 045478 605 RFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQT 684 (852)
Q Consensus 605 ~v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~ 684 (852)
||+|+||+|. .++.. ++.+..+. +++.|+++|+++ | +|.+
T Consensus 246 GV~V~ii~~~----~~d~~----~~~~a~~~-------~~~~Ll~~Gv~I-~-------------------~y~~----- 285 (411)
T PRK11263 246 GVRVRLILQG----EPDMP----IVRVGARL-------LYNYLLKGGVQI-Y-------------------EYCR----- 285 (411)
T ss_pred CCEEEEEeCC----CCCcH----HHHHHHHH-------HHHHHHHCCCEE-E-------------------EecC-----
Confidence 8999999994 34443 33344443 378899999986 2 1321
Q ss_pred hhHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCcccccccCCCCCcchHHHHHHHH
Q 045478 685 ENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAKKSHPRGQVYGYRTSLW 764 (852)
Q Consensus 685 ~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~~~~~~~~~~g~~~~lR~~Lw 764 (852)
.++|+|+|||||++++|||+|||.|||..| .|+++.|+|++++ .++.....+++
T Consensus 286 ---------------~~lHaK~~viD~~~~~vGS~Nld~rS~~lN--~E~~~~i~d~~~a---------~~l~~~~~~~~ 339 (411)
T PRK11263 286 ---------------RPLHGKVALMDDHWATVGSSNLDPLSLSLN--LEANLIIRDRAFN---------QTLRDNLNGLI 339 (411)
T ss_pred ---------------CCceeEEEEECCCEEEEeCCcCCHHHhhhh--hhcCEEEeCHHHH---------HHHHHHHHHHH
Confidence 489999999999999999999999999865 9999999998654 13344455566
Q ss_pred HHhcC
Q 045478 765 AEHLG 769 (852)
Q Consensus 765 ~ehlG 769 (852)
+||.-
T Consensus 340 ~~~s~ 344 (411)
T PRK11263 340 AADCQ 344 (411)
T ss_pred HhhCE
Confidence 65543
|
|
| >COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=339.05 Aligned_cols=337 Identities=24% Similarity=0.323 Sum_probs=234.1
Q ss_pred cccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHH
Q 045478 207 RKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFG 286 (852)
Q Consensus 207 ~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~ 286 (852)
..++.++++.++ .+.|.+++++|++|+++|+++.|.+.+ + ..+..+.
T Consensus 57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~~~-------d------~~~~~i~ 103 (438)
T COG1502 57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIWQD-------D------ELGREIL 103 (438)
T ss_pred CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEEeC-------C------hhHHHHH
Confidence 588889999886 788999999999999999999887644 2 3468999
Q ss_pred HHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHHhhhcCCCC-EEEecCCCCCCcchhhhhccccccccCc
Q 045478 287 ELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSV-NCVLAPRYASNKLSIFKQQVVGTLFTHH 365 (852)
Q Consensus 287 ~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~gv-~v~~~~~~~~~~~~~~~~~~~~~~~~hH 365 (852)
++|.++|++||+||+|+ |+.++.... .......++++++ ++....+... ... .....+.++|
T Consensus 104 ~~l~~~a~~gv~vr~l~-D~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~--~~~---~~~~~~~r~H 166 (438)
T COG1502 104 DALIEAAKRGVEVRLLL-DDIGSTRGL-----------LKSLLALLKRAGIEEVRLFNPASP--RPL---RFRRLNRRLH 166 (438)
T ss_pred HHHHHHHHcCCEEEEEE-ecCCCcccc-----------cHHHHHHHhcCCceEEEecCCccc--ccc---hhhhhhcccc
Confidence 99999999999999997 998763211 2356777888999 6554432211 010 1234567999
Q ss_pred cceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHHHH
Q 045478 366 QKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYD 445 (852)
Q Consensus 366 qK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~d 445 (852)
+|++|||+. ++|+||.|+.+.++... ....+|+|++++++||+|.+
T Consensus 167 ~K~~viD~~--------i~~vGg~N~~d~y~~~~--------------------------~~~~~~~D~~~~~~g~~v~~ 212 (438)
T COG1502 167 RKIVVIDGK--------VAFVGGANIGDEYFHKD--------------------------KGLGYWRDLHVRITGPAVAD 212 (438)
T ss_pred ceEEEEcCC--------EEEecCcccchhhhccC--------------------------cCcccceeeeEEEECHHHHH
Confidence 999999998 99999999999554321 02248999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCCC
Q 045478 446 ILINFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPK 525 (852)
Q Consensus 446 l~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~ 525 (852)
+..+|.++|+....... .+.. .. .+.. +. ...........+|++.+.+.. ..+.
T Consensus 213 l~~~f~~~w~~~~~~~~-~~~~--------~~----~~~~----~~------~~~~~~~~~~~~~~~~~~P~~---~~~~ 266 (438)
T COG1502 213 LARLFIQDWNLESGSSK-PLLA--------LV----RPPL----QS------LSLLPVGRGSTVQVLSSGPDK---GLGS 266 (438)
T ss_pred HHHHHHHHhhhccCcCc-cccc--------cc----cccc----cc------ccccccccCcceEEEecCCcc---ccch
Confidence 99999999998743320 0000 00 0000 00 000011122236777653211 1000
Q ss_pred ChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCC
Q 045478 526 DVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANER 605 (852)
Q Consensus 526 ~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~ 605 (852)
....+...|+.+|.+|+++|+|++|||++. . ++..++..+ +.+|
T Consensus 267 -----------------~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~------~-----------~~~~al~~a--~~~G 310 (438)
T COG1502 267 -----------------ELIELNRLLLKAINSARESILIATPYFVPD------R-----------ELLAALKAA--ARRG 310 (438)
T ss_pred -----------------hhhhHHHHHHHHHHhhceEEEEEcCCcCCC------H-----------HHHHHHHHH--HhcC
Confidence 011245899999999999999999999953 2 344445544 3478
Q ss_pred cEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhh
Q 045478 606 FSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTE 685 (852)
Q Consensus 606 v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~ 685 (852)
|+|+|++|.. +.++.. ++++..+. .+..|.+.|+++ | +|.+
T Consensus 311 v~V~ii~~~~--~~~d~~----~~~~~~~~-------~~~~l~~~gv~i-~-------------------~~~~------ 351 (438)
T COG1502 311 VDVRIIIPSL--GANDSA----IVHAAYRA-------YLKELLEAGVKV-Y-------------------EYPG------ 351 (438)
T ss_pred CEEEEEeCCC--CCCChH----HHHHHHHH-------HHHHHHHhCCEE-E-------------------EecC------
Confidence 9999999953 223332 33344443 378888999875 2 1221
Q ss_pred hHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCcc
Q 045478 686 NRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHY 743 (852)
Q Consensus 686 ~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~ 743 (852)
..++|+|+|||||++++|||+|||.||+.+| +|++++|+|+.+
T Consensus 352 -------------g~~lH~K~~iiD~~~~~vGS~N~~~rS~~lN--~E~~~~i~d~~~ 394 (438)
T COG1502 352 -------------GAFLHSKVMIIDDRTVLVGSANLDPRSLRLN--FEVGLVIEDPEL 394 (438)
T ss_pred -------------CCcceeeEEEEcCCEEEEeCCcCCHhHHHHh--hhheeEEeCHHH
Confidence 0399999999999999999999999999966 999999999844
|
|
| >PHA02820 phospholipase-D-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=329.84 Aligned_cols=327 Identities=15% Similarity=0.178 Sum_probs=210.9
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
...|+.+.++|.+||++|+|+.+.|.++ +.. ....+.+|.++|++||+|||+||||+ |..+.
T Consensus 25 ~~t~~~~~~lI~~Ak~~I~I~s~yf~~~-----d~~---~~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~--------- 86 (424)
T PHA02820 25 LSTFNFWREILSNTTKTLDISSFYWSLS-----DEV---GTNFGTMILNEIIQLPKRGVRVRIAV-NKSNK--------- 86 (424)
T ss_pred CCHHHHHHHHHHhhCcEEEEEeEEEecC-----ccc---cchhHHHHHHHHHHHHHCCCEEEEEE-CCCCC---------
Confidence 3568889999999999999999877531 110 00125789999999999999999996 86431
Q ss_pred ccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCC
Q 045478 319 GVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDT 398 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt 398 (852)
.....+.|+++||+++.++... ....++|+|++|||++ ++|+||+|+++ |+.+
T Consensus 87 ------~~~~~~~L~~aGv~v~~~~~~~------------~~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~ 139 (424)
T PHA02820 87 ------PLKDVELLQMAGVEVRYIDITN------------ILGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT 139 (424)
T ss_pred ------chhhHHHHHhCCCEEEEEecCC------------CCcccceeeEEEECCC--------EEEEeCCcCCh-hhhh
Confidence 1133466888999998654211 1235899999999998 99999999977 6643
Q ss_pred CCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeee--eChHHHHHHHHHHHHHhhhhhhhhhhhccccccccccc
Q 045478 399 PEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKV--EGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSL 476 (852)
Q Consensus 399 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v--~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~ 476 (852)
..+|+++.+ +||+|.+|++.|.++|+.+++.. . ..|..
T Consensus 140 -------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~----~--~~~~~--- 179 (424)
T PHA02820 140 -------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNL----P--YNWKN--- 179 (424)
T ss_pred -------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCC----C--Ccccc---
Confidence 123667776 79999999999999999865321 0 00100
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHH
Q 045478 477 INLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIR 556 (852)
Q Consensus 477 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~ 556 (852)
.++ ...+...+. . ....+....|++.+. |... ++. ......++|+.+|.
T Consensus 180 ----~~~---~~~~~~~p~--~--~~~~~~~~~~~~sss--------P~~~---------~~~---~r~~~~~~~l~~I~ 228 (424)
T PHA02820 180 ----FYP---LYYNTDHPL--S--LNVSGVPHSVFIASA--------PQQL---------CTM---ERTNDLTALLSCIR 228 (424)
T ss_pred ----ccc---cccccCCCc--c--cccCCccceEEEeCC--------Chhh---------cCC---CCCchHHHHHHHHH
Confidence 000 000100000 0 001111123343331 1100 000 01235789999999
Q ss_pred hccceEEEeecccccCCC-------CCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhHHHHH
Q 045478 557 SAQHFIYIENQYFIGSSY-------HWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEIL 629 (852)
Q Consensus 557 ~Ak~~IyIEnqYFi~~~~-------~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~~~~~~ 629 (852)
+||++|||+++||++... .|| .+..|++-|+ +.|||+|+|++|.|+. +..+.
T Consensus 229 ~Ak~~I~I~tpyfvP~~~~~~~~~~yw~-----------~i~~AL~~AA---~~RGV~VriLvp~~~d----~~~~~--- 287 (424)
T PHA02820 229 NASKFVYVSVMNFIPIIYSKAGKILFWP-----------YIEDELRRAA---IDRKVSVKLLISCWQR----SSFIM--- 287 (424)
T ss_pred HHhhEEEEEEccccceeeccCCcccchH-----------HHHHHHHHHH---HhCCCEEEEEEeccCC----CCccH---
Confidence 999999999999997621 343 1223333222 2488999999997653 22221
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEeeEEEE
Q 045478 630 YWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIV 709 (852)
Q Consensus 630 ~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV 709 (852)
++... .++.|.++|+++ ++++|....+.. ..| ...++|||+|||
T Consensus 288 -~a~~~-------~l~~L~~~gv~I------~Vk~y~~p~~~~----~~~------------------~~~f~HaK~~vv 331 (424)
T PHA02820 288 -RNFLR-------SIAMLKSKNINI------EVKLFIVPDADP----PIP------------------YSRVNHAKYMVT 331 (424)
T ss_pred -HHHHH-------HHHHHhccCceE------EEEEEEcCcccc----cCC------------------cceeeeeeEEEE
Confidence 22222 257788889876 366774321110 000 125999999999
Q ss_pred cceeEEecCcCcccCCCCCCCCceeEEEEecC
Q 045478 710 DDEYVIMGSANINQRSLEGSRDTEIAMGAYQP 741 (852)
Q Consensus 710 DD~~~iIGSANln~RSm~~n~DsEi~v~i~d~ 741 (852)
|| ++.|||||||.|||..| .|+++.++|+
T Consensus 332 D~-~a~IGTsN~D~rsf~~n--~ev~~~i~~~ 360 (424)
T PHA02820 332 DK-TAYIGTSNWTGNYFTDT--CGVSINITPD 360 (424)
T ss_pred cc-cEEEECCcCCHHHHhcc--CcEEEEEecC
Confidence 97 69999999999999977 9999999886
|
|
| >PRK09428 pssA phosphatidylserine synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=320.95 Aligned_cols=349 Identities=17% Similarity=0.170 Sum_probs=217.3
Q ss_pred CccccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCc
Q 045478 203 YFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGE 282 (852)
Q Consensus 203 ~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~ 282 (852)
.+|. .++.++++.+| +++|++|+++|++|+++|+|++|+|..+ ..+
T Consensus 19 ~~~~-~~~~v~~l~~~--------------------~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D-------------~~g 64 (451)
T PRK09428 19 KIPQ-SPDDVETLYSP--------------------ADFRETLLEKIASAKKRIYIVALYLEDD-------------EAG 64 (451)
T ss_pred Cccc-CcccEEEEcCH--------------------HHHHHHHHHHHHhcCCeEEEEEEEecCC-------------chH
Confidence 4555 77889999987 7899999999999999999999987542 456
Q ss_pred chHHHHHHHhh--hcCCeEEEEEeCCC-------cccccccccccccccCCcHHHHhhhcCC--CCEEEecCCCCCCcch
Q 045478 283 LSFGELLKHKS--QEGVRVLLLIWDDK-------TSHDNLFIKTEGVMQTHDEETRKFFKHS--SVNCVLAPRYASNKLS 351 (852)
Q Consensus 283 ~~l~~~L~~~a--~~GV~VriLvwD~~-------~s~~~~~~~~~~~~~~~~~~~~~~l~~~--gv~v~~~~~~~~~~~~ 351 (852)
..|.++|.+|+ ++||+|+||+ |.. |+... .........|+++ ||++.++.. |..
T Consensus 65 ~~il~AL~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG~~~~----------~~~~~~~~~l~~~~~gv~v~~f~~-p~~--- 129 (451)
T PRK09428 65 REILDALYQAKQQNPELDIKVLV-DWHRAQRGLIGAAAS----------NTNADWYCEMAQEYPGVDIPVYGV-PVN--- 129 (451)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEE-EcccccccccccCCC----------CcCHHHHHHHHHhCCCceEEEcCC-ccc---
Confidence 89999999885 4899999997 974 32210 0123455556543 689887631 211
Q ss_pred hhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCce
Q 045478 352 IFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPW 431 (852)
Q Consensus 352 ~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pW 431 (852)
....+.++|+|++|||++ |+|+| .||.+ .|.+. + .. ..
T Consensus 130 -----~~e~~gr~HrKi~IiD~~--------v~ysG-aNi~d-~Yl~~-~------------------------~~--~r 167 (451)
T PRK09428 130 -----TREALGVLHLKGFIIDDT--------VLYSG-ASLNN-VYLHQ-H------------------------DK--YR 167 (451)
T ss_pred -----cchhhhhceeeEEEECCC--------EEEec-ccccH-HHhcC-C------------------------cc--cC
Confidence 112456899999999998 99997 79999 55321 0 01 12
Q ss_pred eeceeeeeChHHHHHHHHHHHHHhhhhhhhhhhhccccccccc--cc---cc-c-cccCCCCCCCCCCCCCCCCCCCCCC
Q 045478 432 HDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDD--SL---IN-L-DRIGITPSTGPHSYKPTRAGSEKET 504 (852)
Q Consensus 432 hDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~--~~---~~-~-~~~~~~~~~~P~~~~~~~~~~~~~~ 504 (852)
.|..++|+||++.++...|.+.|..++.... .+.. .|... .. .. + ..+. ... .......
T Consensus 168 ~Dry~~i~g~~la~~~~~fi~~~~~~~~~v~-~l~~--~~~~~~~~~~~~~~~~~~~l~------~~~-----~~~~~~~ 233 (451)
T PRK09428 168 YDRYHLIRNAELADSMVNFIQQNLLNSPAVN-RLDQ--PNRPKTKEIKNDIRQFRQRLR------DAA-----YQFQGQA 233 (451)
T ss_pred cceEEEEeCchHHHHHHHHHHHHhhccCccc-cccc--cccccchhhHHHHHHHHHHHh------hhc-----cCccccc
Confidence 3778889999999999999999987543210 0000 00000 00 00 0 0000 000 0000001
Q ss_pred CCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCC
Q 045478 505 ENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGA 584 (852)
Q Consensus 505 ~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~ 584 (852)
+.-.+++.... |.+. ...+.+.+..+|.+|++.|+|.||||+++
T Consensus 234 ~~~~~~v~p~~----------------------g~g~--~~~l~~~~~~li~~A~~~i~I~TPYF~p~------------ 277 (451)
T PRK09428 234 NNDELSVTPLV----------------------GLGK--KNLLNKTIFHLMASAEQKLTICTPYFNLP------------ 277 (451)
T ss_pred CCCCeEEeeee----------------------ccCC--chHHHHHHHHHHhccCcEEEEEeCCcCCC------------
Confidence 11123333221 1111 25678899999999999999999999952
Q ss_pred CCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHH-------HHHHHHHCC---CCC
Q 045478 585 DNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKI-------VAQALQDNG---LSN 654 (852)
Q Consensus 585 ~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~-------i~~~L~~~G---v~~ 654 (852)
..+...+..++ .+|++|.||+|..-..+--.+..+.++.+....+ .|.. ..+.|.++| +++
T Consensus 278 -----~~l~~~L~~a~--~rGv~V~Ii~~~~~andfy~~~d~~~~~~~~~py--~ye~~lr~f~~~~~~li~~G~l~v~i 348 (451)
T PRK09428 278 -----AILVRNIIRLL--RRGKKVEIIVGDKTANDFYIPPDEPFKIIGALPY--LYEINLRRFAKRLQYYIDNGQLNVRL 348 (451)
T ss_pred -----HHHHHHHHHHH--hcCCcEEEEcCCcccccCcCCCccHHHHhhhhHH--HHHHhhhhhHHHhhhhhhcCcceEEE
Confidence 23444555553 3779999999964211100001112222333221 1111 122445555 432
Q ss_pred CCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCCCCCCCcee
Q 045478 655 KYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEI 734 (852)
Q Consensus 655 ~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi 734 (852)
|. |. .-.+|+|.|+|||++++|||+|||.||+. .|.|+
T Consensus 349 ----------~~----------~~--------------------~~~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~ 386 (451)
T PRK09428 349 ----------WK----------DG--------------------DNSYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLEN 386 (451)
T ss_pred ----------Ee----------cC--------------------CCcceEEEEEEeCCEEEEcCCCCChhHhh--hcccc
Confidence 21 21 24899999999999999999999999998 56999
Q ss_pred EEEEecCcc
Q 045478 735 AMGAYQPHY 743 (852)
Q Consensus 735 ~v~i~d~~~ 743 (852)
++.|+|++.
T Consensus 387 ~l~i~d~~~ 395 (451)
T PRK09428 387 ALLIHDPKQ 395 (451)
T ss_pred eEEEECChH
Confidence 999999853
|
|
| >PHA03003 palmytilated EEV membrane glycoprotein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=314.70 Aligned_cols=319 Identities=16% Similarity=0.159 Sum_probs=202.0
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
-.+|++++++|++||++|+|+.|++.- +++ ..+.+|.++|++||+|||+||||+ |..++
T Consensus 30 ~~~~~~l~~~I~~Ak~~I~i~~yi~~~-----~~d------~~g~~i~~aL~~aa~rGV~Vril~-D~~~~--------- 88 (369)
T PHA03003 30 MSTYECFDEIISQAKKYIYIASFCCNL-----RST------PEGRLILDKLKEAAESGVKVTILV-DEQSG--------- 88 (369)
T ss_pred CCHHHHHHHHHHhhhhEEEEEEEEecc-----cCC------chHHHHHHHHHHhccCCCeEEEEe-cCCCC---------
Confidence 368999999999999999999997311 112 456899999999999999999996 97643
Q ss_pred ccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCC
Q 045478 319 GVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDT 398 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt 398 (852)
....+.|+.+||++....... ....+.+|.|++|||++ +||+||+||++ +|-+
T Consensus 89 -------~~~~~~L~~~Gv~v~~~~~~~-----------~~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~-~~~~ 141 (369)
T PHA03003 89 -------DKDEEELQSSNINYIKVDIGK-----------LNNVGVLLGSFWVSDDR--------RCYIGNASLTG-GSIS 141 (369)
T ss_pred -------CccHHHHHHcCCEEEEEeccc-----------cCCCCceeeeEEEEcCc--------EEEEecCccCC-cccC
Confidence 134567888999987543110 00012458899999999 99999999999 6644
Q ss_pred CCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhhhhhhhhhccccccccccccc
Q 045478 399 PEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDSLIN 478 (852)
Q Consensus 399 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~~~~ 478 (852)
..|. ...|+|. ||+|.+|++.|.+.|+.+++... .. .
T Consensus 142 ~~~~-------------------------~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~--~~-----------~ 178 (369)
T PHA03003 142 TIKT-------------------------LGVYSTY-----PPLATDLRRRFDTFKAFNKNKSV--FN-----------R 178 (369)
T ss_pred cccc-------------------------ceeEecC-----cHHHHHHHHHHHHHHHhcCCCCc--cc-----------c
Confidence 3221 2479993 99999999999999997654320 00 0
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhc
Q 045478 479 LDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSA 558 (852)
Q Consensus 479 ~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~A 558 (852)
.. ..+. .|...+ .. ...+ ...+++.+ + |... +.. ....++++|+++|.+|
T Consensus 179 ~~-~~~~---~~~~~~---~~-~~~~--~~~~~~~s---~-----P~~~---------~~~---~~~~~~~~ll~~I~~A 228 (369)
T PHA03003 179 LC-CACC---LPVSTK---YH-INNP--IGGVFFSD---S-----PEHL---------LGY---SRTLDADVVLHKIKSA 228 (369)
T ss_pred cc-cccC---Cccccc---cc-ccCC--CcceEEec---C-----ChHH---------cCC---CCCcCHHHHHHHHHHH
Confidence 00 0000 000000 00 0000 11123322 1 1100 000 0124688999999999
Q ss_pred cceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHHH
Q 045478 559 QHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSM 638 (852)
Q Consensus 559 k~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~ 638 (852)
|++|+|+++||++.... +. . . .....+..+|.++. +.+||+|+|++|.+.. .+. . ..
T Consensus 229 k~~I~I~t~yf~P~~~~--d~-~--~--~~~~~i~~AL~~AA-a~RGV~VRILv~~~~~--~~~-~--------~~---- 285 (369)
T PHA03003 229 KKSIDLELLSLVPVIRE--DD-K--T--TYWPDIYNALIRAA-INRGVKVRLLVGSWKK--NDV-Y--------SM---- 285 (369)
T ss_pred hhEEEEEEeccccEEee--CC-C--C--ccHHHHHHHHHHHH-HcCCCEEEEEEecCCc--CCc-h--------hh----
Confidence 99999999999853210 00 0 0 00124445544431 2588999999996421 111 0 11
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEecC
Q 045478 639 MYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGS 718 (852)
Q Consensus 639 ~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGS 718 (852)
...+.|+++|++. .-.+++|. ...|+|+|||||++++|||
T Consensus 286 ---~~~~~L~~~G~~~----~i~vri~~---------------------------------~~~H~K~~VVD~~~a~iGS 325 (369)
T PHA03003 286 ---ASVKSLQALCVGN----DLSVKVFR---------------------------------IPNNTKLLIVDDEFAHITS 325 (369)
T ss_pred ---hHHHHHHHcCCCC----CceEeeec---------------------------------CCCCceEEEEcCCEEEEec
Confidence 1267888999642 01122221 0179999999999999999
Q ss_pred cCcccCCCCCCCCceeEEEEecCcc
Q 045478 719 ANINQRSLEGSRDTEIAMGAYQPHY 743 (852)
Q Consensus 719 ANln~RSm~~n~DsEi~v~i~d~~~ 743 (852)
+||+.||+..| .|+++.++++..
T Consensus 326 ~N~d~~s~~~~--~e~~~~~~~~~~ 348 (369)
T PHA03003 326 ANFDGTHYLHH--AFVSFNTIDKEL 348 (369)
T ss_pred cccCchhhccC--CCeEEecCChhH
Confidence 99999999865 999887776643
|
|
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-26 Score=224.85 Aligned_cols=157 Identities=46% Similarity=0.770 Sum_probs=134.5
Q ss_pred ceeeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCC
Q 045478 22 PVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCE 101 (852)
Q Consensus 22 ~~~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~ 101 (852)
.+||||+|+|+|++|++|++||.+++.+++|++++..|............+....++||||+|++++.+++||+++.++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~ 81 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSE 81 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCC
Confidence 47899999999999999999999888888888875433222110000122234566999999999998889999999999
Q ss_pred CCeeeeEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 102 NPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 102 nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
||+|||+|.|++++....+.|+|+|++.+++++||++.||+.++..|...+.|++|.+..++++++.++|+|+++|+
T Consensus 82 nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 82 NPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999999999999888999999999999999999999999999999999999999988899989999999999995
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-24 Score=177.19 Aligned_cols=73 Identities=53% Similarity=1.090 Sum_probs=71.2
Q ss_pred ccccCCCCchHHHHHHHHHHHHhHHHHhhhhccccccceeccceeeCCCCCcccCCCCCCCCCCCCcccccCC
Q 045478 772 EDTFREPQSLECMQRVNRIAGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDTFPDVGGKILGAPT 844 (852)
Q Consensus 772 ~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~~~~~g~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (852)
++.|.+|+|++|++++|++|++||++|+++++++|+|||+.||+.++.||++++|||++.||||+|+|||++|
T Consensus 2 e~~F~~PesleCVr~Vn~iae~nW~~y~~ee~~dl~GHLl~YPv~V~~dG~V~~LpG~e~FPDt~~~VlG~~S 74 (74)
T PF12357_consen 2 EECFLEPESLECVRRVNEIAEENWKQYASEEVTDLPGHLLKYPVQVDRDGKVTPLPGCEFFPDTGGKVLGSKS 74 (74)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhhccccccCCCccccCCeEEcCCCCEeeCCCCCcCCCCCCcccCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999986
|
Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif. |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=181.11 Aligned_cols=127 Identities=27% Similarity=0.488 Sum_probs=114.2
Q ss_pred eeeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCC
Q 045478 23 VFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCEN 102 (852)
Q Consensus 23 ~~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~n 102 (852)
..+...|.|.|+||++|+.+ .+|||+|.+++++++||+++.++.|
T Consensus 7 ~R~~~sL~v~V~EAk~Lp~~-----------------------------------~~~Y~~i~Ld~~~vaRT~v~~~~~n 51 (146)
T cd04013 7 RRTENSLKLWIIEAKGLPPK-----------------------------------KRYYCELCLDKTLYARTTSKLKTDT 51 (146)
T ss_pred eEEEEEEEEEEEEccCCCCc-----------------------------------CCceEEEEECCEEEEEEEEEcCCCC
Confidence 45688899999999999864 4899999999999999999999999
Q ss_pred CeeeeEEEEeecCCCceEEEEEEe-cCCC----CCceeeeEeeeceeccCCCceeeeeeeccCCCCC-------CCCCCE
Q 045478 103 PFWDEHFCVPVAHSVVNLEFHVKD-NDIL----GAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN-------LKPFPQ 170 (852)
Q Consensus 103 P~WnE~f~~~~~~~~~~l~~~V~d-~d~~----~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~-------~k~~g~ 170 (852)
|.|+|+|+|++.|+...++|.|++ .+.. ++++||++.||++++..|..+++||+|++..+.+ ++..++
T Consensus 52 P~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~ 131 (146)
T cd04013 52 LFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPS 131 (146)
T ss_pred CcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCE
Confidence 999999999999999999999954 4443 4789999999999999999999999999888877 677899
Q ss_pred EEEEEEeeecCCcc
Q 045478 171 LHVSMQYKPIGQIP 184 (852)
Q Consensus 171 l~l~l~f~~~~~~~ 184 (852)
||++++|.++...|
T Consensus 132 lrik~rf~~~~~lP 145 (146)
T cd04013 132 IRIKARYQSTRVLP 145 (146)
T ss_pred EEEEEEEEEeeeCC
Confidence 99999999987765
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=176.14 Aligned_cols=117 Identities=22% Similarity=0.491 Sum_probs=104.5
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecC-CCCCee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISN-CENPFW 105 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~-s~nP~W 105 (852)
|+|+|+|++|++|++.+ +++ +||||+|.+++.+ .||+++.+ +.||+|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~------------------------------sDPYv~i~lg~~~-~kT~v~~~~~~nP~W 49 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTR------------------------------MDPYCRIRVGHAV-YETPTAYNGAKNPRW 49 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCC------------------------------CCceEEEEECCEE-EEeEEccCCCCCCcc
Confidence 89999999999998877 666 9999999999887 59999876 799999
Q ss_pred eeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeece-eccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 106 DEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVE-KILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 106 nE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~-~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
||+|+|.+++....+.|+|+|+|.++ |++||.+.|++. .+..|+..+.||+|....++ +..|+|+|+|+|
T Consensus 50 Ne~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~--~~~g~i~l~l~y 121 (121)
T cd04016 50 NKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE--DKEGMINLVFSY 121 (121)
T ss_pred CeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCC--CCceEEEEEEeC
Confidence 99999999987788999999999998 899999999995 68889889999999765554 356999999987
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-19 Score=167.87 Aligned_cols=114 Identities=24% Similarity=0.334 Sum_probs=103.8
Q ss_pred EEEEEEEecC---CCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 29 LDLSILEAKS---LPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 29 L~v~I~~A~~---L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
|+|+|++|++ |+.+|..+. +||||+|.+++.+ .||+++.++.||+|
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~------------------------------sDPYv~i~~g~~~-~rTk~~~~~~nP~W 50 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGS------------------------------TDAYCVAKYGPKW-VRTRTVEDSSNPRW 50 (126)
T ss_pred eEEEEEEeECCccccccccCCC------------------------------CCeeEEEEECCEE-eEcCcccCCCCCcc
Confidence 8999999999 888887766 9999999998887 79999999999999
Q ss_pred eeEEEEeecCCCceEEEEEEecCCC-------CCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEE
Q 045478 106 DEHFCVPVAHSVVNLEFHVKDNDIL-------GAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHV 173 (852)
Q Consensus 106 nE~f~~~~~~~~~~l~~~V~d~d~~-------~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l 173 (852)
||+|.|++.++...++|+|||++.+ ++++||++.|++..+..+...+.||+|.+..+++.+..|+|+.
T Consensus 51 nE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 51 NEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred eeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 9999999998888899999999886 6999999999999999999999999998777667788899875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >PRK05443 polyphosphate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-18 Score=202.28 Aligned_cols=266 Identities=14% Similarity=0.183 Sum_probs=182.6
Q ss_pred hhHHHHHHHHHhccc-----eEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccc
Q 045478 240 QCWEEICHAVLEARH-----LIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLF 314 (852)
Q Consensus 240 ~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~ 314 (852)
+.|+.+++.|++|.+ +|.|+-|.+.. ..+|.++|+.||++||+|+||| +....
T Consensus 348 ~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~----------------~s~iv~aL~~Aa~~Gk~V~vlv-e~kar----- 405 (691)
T PRK05443 348 ESFDPVVEFLRQAAADPDVLAIKQTLYRTSK----------------DSPIVDALIEAAENGKQVTVLV-ELKAR----- 405 (691)
T ss_pred cCchHHHHHHHHhccCCCeeEEEEEEEEecC----------------CHHHHHHHHHHHHcCCEEEEEE-ccCcc-----
Confidence 568899999999998 89999997642 2699999999999999999998 64321
Q ss_pred ccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCC
Q 045478 315 IKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDG 394 (852)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~ 394 (852)
+....+..+.+.|+++||+|.+- ++ .+..|.|+++||++. ++.-+..+++|+.|+..
T Consensus 406 -----fde~~n~~~~~~L~~aGv~V~y~--~~--------------~~k~HaK~~lid~~e-~~~~~~~~~iGTgN~n~- 462 (691)
T PRK05443 406 -----FDEEANIRWARRLEEAGVHVVYG--VV--------------GLKTHAKLALVVRRE-GGGLRRYVHLGTGNYNP- 462 (691)
T ss_pred -----ccHHHHHHHHHHHHHcCCEEEEc--cC--------------CccceeEEEEEEeec-CCceeEEEEEcCCCCCc-
Confidence 11111245677889999999642 11 136799999999863 22334489999999988
Q ss_pred ccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeC-hHHHHHHHHHHHHHhhhhhhhhhhhcccccccc
Q 045478 395 RYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEG-PAAYDILINFEQRWRRSTKWREFRLKKVTHWYD 473 (852)
Q Consensus 395 r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~G-paa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~ 473 (852)
++- ..|.|+.+.... ..+.|+...|...|.......
T Consensus 463 ~s~-------------------------------~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~------------ 499 (691)
T PRK05443 463 KTA-------------------------------RLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK------------ 499 (691)
T ss_pred chh-------------------------------hhccceeEEEeChHHHHHHHHHHHHHhCcCcccc------------
Confidence 321 357899998555 589999999998876421100
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHH
Q 045478 474 DSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVK 553 (852)
Q Consensus 474 ~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~ 553 (852)
.. .++-+ |.. ....+.+.+..
T Consensus 500 --------~~--------------------------~l~~s---------P~~----------------~~~~l~~~i~~ 520 (691)
T PRK05443 500 --------LR--------------------------KLLVS---------PFT----------------LRERLLELIDR 520 (691)
T ss_pred --------cc--------------------------EEeec---------Ccc----------------HHHHHHHHHHH
Confidence 00 00100 111 14678889999
Q ss_pred HHHhccc----eEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEe-------cCCCCCCCCc
Q 045478 554 AIRSAQH----FIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVI-------PMWPEGNPNS 622 (852)
Q Consensus 554 aI~~Ak~----~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~Ivl-------P~~peg~~~~ 622 (852)
.|.+||+ +|+|.++||. + ..+..++..| +.+||+|.+++ |..| |.++.
T Consensus 521 ei~~Ak~G~~a~I~ik~n~l~-------d-----------~~ii~aL~~A--s~~GV~V~liVRGiC~l~pgip-g~sd~ 579 (691)
T PRK05443 521 EIANARAGKPARIIAKMNSLV-------D-----------PQIIDALYEA--SQAGVKIDLIVRGICCLRPGVP-GLSEN 579 (691)
T ss_pred HHHHHhcCCCCEEEEEcCCCC-------C-----------HHHHHHHHHH--HHCCCeEEEEEecccccCCCCC-CCCCC
Confidence 9999999 9999999964 2 1344444444 33779999999 2111 23333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEE
Q 045478 623 AAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYV 702 (852)
Q Consensus 623 ~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 702 (852)
..+ + ++...+.+ ++++
T Consensus 580 i~v--------~-------s~v~r~Le-h~rI------------------------------------------------ 595 (691)
T PRK05443 580 IRV--------R-------SIVGRFLE-HSRI------------------------------------------------ 595 (691)
T ss_pred EEE--------H-------HHHHHHHh-cCEE------------------------------------------------
Confidence 222 1 22455544 2332
Q ss_pred EeeEEEE---cceeEEecCcCcccCCCCCCCCceeEEEEecCcc
Q 045478 703 HAKGMIV---DDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHY 743 (852)
Q Consensus 703 HSKlmIV---DD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~ 743 (852)
++. ||.+++||||||+.|||. ++.|+++.|+|+..
T Consensus 596 ----y~f~~gd~~~~~iGSAn~d~Rsl~--~r~Ev~~~i~d~~~ 633 (691)
T PRK05443 596 ----YYFGNGGDEEVYISSADWMPRNLD--RRVEVLFPILDPRL 633 (691)
T ss_pred ----EEEeCCCCcEEEEECCCCCccccc--ceEEEeEEEeCHHH
Confidence 222 899999999999999998 45999999999854
|
|
| >TIGR03705 poly_P_kin polyphosphate kinase 1 | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-18 Score=198.61 Aligned_cols=266 Identities=14% Similarity=0.192 Sum_probs=178.6
Q ss_pred hhHHHHHHHHHhccc-----eEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccc
Q 045478 240 QCWEEICHAVLEARH-----LIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLF 314 (852)
Q Consensus 240 ~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~ 314 (852)
+.|+.+++.|++|.+ +|.|+-|.+.. +.+|.++|.+||++|++|++|| +-.....
T Consensus 339 ~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~----------------~s~ii~aL~~Aa~~Gk~V~v~v-eLkArfd--- 398 (672)
T TIGR03705 339 ESFDPVVEFLRQAAEDPDVLAIKQTLYRTSK----------------DSPIIDALIEAAENGKEVTVVV-ELKARFD--- 398 (672)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEEEEecC----------------CcHHHHHHHHHHHcCCEEEEEE-Eehhhcc---
Confidence 568899999999998 89999997643 2699999999999999999998 7221000
Q ss_pred ccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCC
Q 045478 315 IKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDG 394 (852)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~ 394 (852)
...+-++.+.|+.+|++|..-- ..+..|+|+++||.+..| .-+..+++|.-|....
T Consensus 399 -------e~~ni~wa~~le~aG~~viyg~----------------~~~k~H~K~~li~r~~~~-~~~~y~~igTgN~n~~ 454 (672)
T TIGR03705 399 -------EEANIRWARRLEEAGVHVVYGV----------------VGLKTHAKLALVVRREGG-ELRRYVHLGTGNYHPK 454 (672)
T ss_pred -------chhhHHHHHHHHHcCCEEEEcC----------------CCeeeeeEEEEEEEeeCC-ceEEEEEecCCCCCCc
Confidence 0112356678999999998521 124789999999976222 2223677777665551
Q ss_pred ccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceee-eeChHHHHHHHHHHHHHhhhhhhhhhhhcccccccc
Q 045478 395 RYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCK-VEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYD 473 (852)
Q Consensus 395 r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~-v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~ 473 (852)
. -..|.|+++. ..+..+.|+...|...|....... +
T Consensus 455 t--------------------------------a~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~---~-------- 491 (672)
T TIGR03705 455 T--------------------------------ARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK---F-------- 491 (672)
T ss_pred c--------------------------------cccccceeEEEeChHHHHHHHHHHHHhhCCCcchh---h--------
Confidence 0 1368999998 888899999999998776321110 0
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHH
Q 045478 474 DSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVK 553 (852)
Q Consensus 474 ~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~ 553 (852)
. . +-+ + |.. .+..+.+.+.+
T Consensus 492 ---------~--------------------------~-l~~---~-----P~~----------------~~~~~~~~i~~ 511 (672)
T TIGR03705 492 ---------K--------------------------H-LLV---S-----PFT----------------LRKRLLELIDR 511 (672)
T ss_pred ---------H--------------------------H-HHh---C-----cch----------------HHHHHHHHHHH
Confidence 0 0 000 0 111 14568888999
Q ss_pred HHHhccc----eEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEe-------cCCCCCCCCc
Q 045478 554 AIRSAQH----FIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVI-------PMWPEGNPNS 622 (852)
Q Consensus 554 aI~~Ak~----~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~Ivl-------P~~peg~~~~ 622 (852)
.|.+||+ +|+|.++||.. ..+..++..| +.+||+|++++ |..| |.++.
T Consensus 512 ei~~Ak~g~~~~I~ik~n~l~D------------------~~ii~aL~~A--s~aGV~V~LivRGiCcL~pgip-g~sd~ 570 (672)
T TIGR03705 512 EIENARAGKPARIIAKMNSLVD------------------PDLIDALYEA--SQAGVKIDLIVRGICCLRPGVP-GLSEN 570 (672)
T ss_pred HHHHHHcCCCCEEEEEcCCCCC------------------HHHHHHHHHH--HHCCCeEEEEEecccccCCCCC-CCCCC
Confidence 9999999 99999999642 1344444444 33779999999 1111 22222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEE
Q 045478 623 AAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYV 702 (852)
Q Consensus 623 ~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 702 (852)
..+. +++..+++
T Consensus 571 i~v~---------------siv~r~Le----------------------------------------------------- 582 (672)
T TIGR03705 571 IRVR---------------SIVGRFLE----------------------------------------------------- 582 (672)
T ss_pred EEEE---------------EEhhHhhC-----------------------------------------------------
Confidence 1110 11333333
Q ss_pred EeeEEEE---cceeEEecCcCcccCCCCCCCCceeEEEEecCcc
Q 045478 703 HAKGMIV---DDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHY 743 (852)
Q Consensus 703 HSKlmIV---DD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~ 743 (852)
|+|+++. ||.+++||||||+.|||. +..|+++.|+|+..
T Consensus 583 h~rIy~f~~~~d~~~~igSAn~m~Rnl~--~r~E~~~~i~d~~~ 624 (672)
T TIGR03705 583 HSRIYYFGNGGEEKVYISSADWMTRNLD--RRVEVLFPIEDPTL 624 (672)
T ss_pred cCEEEEEeCCCCcEEEEECCCCCCCccc--ceEEEEEEEcCHHH
Confidence 4444444 688999999999999998 55999999999853
|
Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2. |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=164.53 Aligned_cols=117 Identities=23% Similarity=0.445 Sum_probs=102.5
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
++|+|++|++|++++..+. +||||+|.+++.+ .||+++.++.||+|||+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~------------------------------~dpYv~v~l~~~~-~kT~v~~~t~nP~Wne~ 49 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT------------------------------NDAYVIIQLGKEK-YSTSVKEKTTSPVWKEE 49 (126)
T ss_pred CEEEEEECcCCcCCCCCcC------------------------------CCceEEEEECCee-eeeeeecCCCCCEeCce
Confidence 5799999999999887665 8999999998776 79999999999999999
Q ss_pred EEEeecC------CCceEEEEEEecCCCC-CceeeeEeeeceecc--CCCceeeeeeeccCCCCCCCCCCEEEEEEE
Q 045478 109 FCVPVAH------SVVNLEFHVKDNDILG-AELIGVVQIPVEKIL--CGNEVDDWFPIAGSYGKNLKPFPQLHVSMQ 176 (852)
Q Consensus 109 f~~~~~~------~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~--~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~ 176 (852)
|.|.+.. ....+.|+|+|++.++ +++||++.|++.++. .+...+.||+|....+++.+..|+|+|+|+
T Consensus 50 f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 50 CSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred EEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 9999876 3567899999999888 999999999999988 577788999997666655567899999875
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-18 Score=160.11 Aligned_cols=119 Identities=22% Similarity=0.353 Sum_probs=107.8
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|.|+|++|++|+.++..+. +||||++.+++..++||+++.++.||.|||+
T Consensus 2 L~v~v~~a~~L~~~d~~g~------------------------------~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~ 51 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGT------------------------------SDPYVKFKYGGKTVYKSKTIYKNLNPVWDEK 51 (121)
T ss_pred eEEEEEEeeCCCCcCCCCC------------------------------CCCeEEEEECCEEEEEeeeccCCCCCcccee
Confidence 7899999999999887765 8999999999877799999999999999999
Q ss_pred EEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 109 FCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 109 f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
|.|.+.+....+.|+|+|++..+ +++||.+.+++.++..+...+.|++|.+..+ .+..|+|+|.+.|+|
T Consensus 52 f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~G~l~l~~~~~~ 121 (121)
T cd04042 52 FTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS--DEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC--ccCceEEEEEEEECC
Confidence 99999877788999999999986 9999999999999998988999999976554 256899999999986
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=157.01 Aligned_cols=118 Identities=26% Similarity=0.433 Sum_probs=101.9
Q ss_pred EEEEEEEecCCCCCCC-cchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeee
Q 045478 29 LDLSILEAKSLPNMDL-ITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE 107 (852)
|.|+|++|++|+.++. .+. +||||.|++++..++||+++.++.||.|||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~------------------------------sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE 51 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKM------------------------------RDCYCTVNLDQEEVFRTKTVEKSLCPFFGE 51 (121)
T ss_pred eEEEEEEccCCCCCCCCCCC------------------------------cCcEEEEEECCccEEEeeEEECCCCCccCC
Confidence 7899999999998753 232 899999999887779999999999999999
Q ss_pred EEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 108 HFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 108 ~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
+|.|.+.+....+.|.|+|++.++ +++||++.++++++..+...+.||+|. +.+...+..|+|+|+++|
T Consensus 52 ~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~-~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 52 DFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQ-PVDADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEE-ccCCCCcccEEEEEEEEC
Confidence 999999876678899999999887 899999999999999888889999994 333333568999999875
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=156.40 Aligned_cols=120 Identities=24% Similarity=0.450 Sum_probs=101.9
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
+..|+|+|++|++|+..+ . +||||+|.+++..++||++. ++.||.|
T Consensus 3 ~~~L~V~Vi~A~~L~~~~---~------------------------------~DPYv~v~l~~~~~~kT~v~-~~~nP~W 48 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKH---V------------------------------PHPYCVISLNEVKVARTKVR-EGPNPVW 48 (126)
T ss_pred eeEEEEEEEEeeCCCCCC---C------------------------------CCeeEEEEECCEeEEEeecC-CCCCCcc
Confidence 457999999999998642 2 89999999998877899985 5899999
Q ss_pred eeEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 106 DEHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 106 nE~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
||+|.|.+..+. ..++|.|+|.+..+ +++||.+.||+.++..|...+.||+|....+.+.+..|+|+|+++|.+
T Consensus 49 nE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 49 SEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 999999865543 56789999998887 999999999999999999899999996554334466799999999986
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=162.03 Aligned_cols=122 Identities=23% Similarity=0.300 Sum_probs=105.6
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecC-CCCCeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISN-CENPFWD 106 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~-s~nP~Wn 106 (852)
.|.|+|++|++|++++.++. +||||+|.+++.. .||+++.+ +.||.||
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~------------------------------sDPYV~v~l~~~~-~kTk~~~~~t~nP~WN 49 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRV------------------------------PEVFVKAQLGNQV-LRTRPSQTRNGNPSWN 49 (150)
T ss_pred CEEEEEEEeECCCCCCCCCC------------------------------CCeEEEEEECCEE-eeeEeccCCCCCCccc
Confidence 38999999999999998776 9999999999865 79999977 6999999
Q ss_pred eEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCC----CceeeeeeeccCCC-----CCCCCCCEEEEEE
Q 045478 107 EHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCG----NEVDDWFPIAGSYG-----KNLKPFPQLHVSM 175 (852)
Q Consensus 107 E~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g----~~~~~w~~L~~~~g-----~~~k~~g~l~l~l 175 (852)
|+|.|.+.++. ..+.|+|+|.+..+ +++||++.||+.++..+ ...+.||+|.+..+ ++.+..|+|+|++
T Consensus 50 E~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i 129 (150)
T cd04019 50 EELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRL 129 (150)
T ss_pred CcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEE
Confidence 99999997654 57899999998876 99999999999998753 45789999987755 5667889999999
Q ss_pred Eeeec
Q 045478 176 QYKPI 180 (852)
Q Consensus 176 ~f~~~ 180 (852)
.|.+.
T Consensus 130 ~~~~~ 134 (150)
T cd04019 130 CLDGG 134 (150)
T ss_pred EecCc
Confidence 99954
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=155.58 Aligned_cols=116 Identities=25% Similarity=0.477 Sum_probs=101.1
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecC-CCCCee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISN-CENPFW 105 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~-s~nP~W 105 (852)
|+|+|+|++|++|++.+.++. +||||+|++++.. .||+++.+ +.||.|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~------------------------------~dpyv~v~~~~~~-~kT~~~~~~~~nP~W 49 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK------------------------------QDPYCVLRIGGVT-KKTKTDFRGGQHPEW 49 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC------------------------------CCceEEEEECCCc-cccccccCCCCCCcc
Confidence 789999999999999887766 8999999998755 89998865 789999
Q ss_pred eeEEEEeecCC-CceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 106 DEHFCVPVAHS-VVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 106 nE~f~~~~~~~-~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
||+|.|.+.++ ...+.|+|+|++..++++||++.+++.++..+...+.|++|.. .+ +..|+|+|+|+|
T Consensus 50 ne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~---~~~G~i~l~l~f 118 (118)
T cd08681 50 DEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KG---RYAGEVYLELTF 118 (118)
T ss_pred CceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CC---cEeeEEEEEEEC
Confidence 99999999874 4678999999988789999999999999987777899999953 33 467999999987
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-17 Score=155.57 Aligned_cols=120 Identities=20% Similarity=0.297 Sum_probs=102.8
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE 107 (852)
.|.|+|++|++|++.+..+. +||||+|.+++.+ .||+++.++.||.|||
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~------------------------------~dpyv~v~~~~~~-~rT~v~~~t~nP~Wne 49 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS------------------------------SSAYVELDFDGQK-KRTRTKPKDLNPVWNE 49 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC------------------------------cCcEEEEEECCEE-ecceeEcCCCCCccce
Confidence 48999999999998887665 8999999999876 7999999999999999
Q ss_pred EEEEeecCCC----ceEEEEEEecCCC--CCceeeeEeeeceecc-CCCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 108 HFCVPVAHSV----VNLEFHVKDNDIL--GAELIGVVQIPVEKIL-CGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 108 ~f~~~~~~~~----~~l~~~V~d~d~~--~~~~iG~~~i~l~~l~-~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
.|.|.+.++. ..+.|+|+|.+.+ ++++||++.|++.++. .+.....||+|.. .+...+..|+|+|+++|++
T Consensus 50 ~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~-~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 50 KLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEK-RGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred EEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeee-CCCCCCccEEEEEEEEEcC
Confidence 9999998643 4689999998877 4899999999999998 5777889999954 3433357899999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=151.73 Aligned_cols=122 Identities=23% Similarity=0.381 Sum_probs=104.6
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC-eeEEEeeeecCCCCCeeee
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG-ATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~-~~~~rT~vi~~s~nP~WnE 107 (852)
|.|+|++|++|+. ..+. +||||+++++. ....||+++.++.||.|||
T Consensus 1 l~v~v~~A~~L~~--~~g~------------------------------~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne 48 (126)
T cd08678 1 LLVKNIKANGLSE--AAGS------------------------------SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDE 48 (126)
T ss_pred CEEEEEEecCCCC--CCCC------------------------------cCCEEEEEECCCCcEEEeEEEecCCCCccCc
Confidence 6799999999986 3343 89999999974 3448999999999999999
Q ss_pred EEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeeecCC
Q 045478 108 HFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQ 182 (852)
Q Consensus 108 ~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~~~ 182 (852)
.|.|.+......+.|+|+|.+..+ +++||++.+++.++..+...+.|++|....+...+..|+|+++++|.+.++
T Consensus 49 ~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 49 HFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred eEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 999999766778999999999887 999999999999999888888999996544433467899999999998664
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=149.88 Aligned_cols=118 Identities=26% Similarity=0.419 Sum_probs=102.8
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
|+|+|+|++|++|++++.++. +||||+|.+.+.. +||+++.++.||.||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~------------------------------~dPyv~v~~~~~~-~~T~~~~~t~nP~W~ 49 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK------------------------------SDPFCVLELVNAR-LQTHTIYKTLNPEWN 49 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC------------------------------CCcEEEEEECCEe-eecceecCCcCCccC
Confidence 789999999999999887665 8999999998776 799999999999999
Q ss_pred eEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 107 EHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 107 E~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
|+|.|++.+....+.|+|+|++..+ +++||++.+++.++..|. ..|++|..+.++ .+..|+|.++|+|.
T Consensus 50 e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~-~~~~G~i~l~~~~~ 119 (119)
T cd08377 50 KIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLR-TRAKGSILLEMDVI 119 (119)
T ss_pred cEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCC-CceeeEEEEEEEeC
Confidence 9999999876778899999998876 899999999999998664 579999655433 35789999999873
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.9e-17 Score=151.60 Aligned_cols=113 Identities=21% Similarity=0.365 Sum_probs=97.8
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|.|+|++|++|+.+ . +||||+|.+++.. +||++++++.||+|||+
T Consensus 2 L~V~Vi~a~~L~~~----~------------------------------~Dpyv~v~l~~~~-~kT~v~~~t~nP~Wne~ 46 (121)
T cd08378 2 LYVRVVKARGLPAN----S------------------------------NDPVVEVKLGNYK-GSTKAIERTSNPEWNQV 46 (121)
T ss_pred EEEEEEEecCCCcc----c------------------------------CCCEEEEEECCcc-ccccccCCCCCCccceE
Confidence 89999999999875 3 8999999998754 89999999999999999
Q ss_pred EEEeecCC-CceEEEEEEecCCCCCceeeeEeeeceeccCCC-----ceeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 109 FCVPVAHS-VVNLEFHVKDNDILGAELIGVVQIPVEKILCGN-----EVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 109 f~~~~~~~-~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~-----~~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
|.|.+.+. ...+.|+|+|++..++++||++.+++.++..+. ..+.||+|....+ .+..|+|+|+++|-
T Consensus 47 F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~--~~~~G~i~l~~~~~ 120 (121)
T cd08378 47 FAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG--GRVGGELMLAVWFG 120 (121)
T ss_pred EEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC--CccceEEEEEEEec
Confidence 99998874 567899999999888999999999999987532 3568999976554 36789999999984
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-16 Score=150.31 Aligned_cols=121 Identities=27% Similarity=0.435 Sum_probs=101.8
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC-eeEEEeeeecCCCCCee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG-ATVAQTRVISNCENPFW 105 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~-~~~~rT~vi~~s~nP~W 105 (852)
|.|+|+|++|++|++.+..++ .+||||++++++ ..++||+++.++.||.|
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~-----------------------------~~dpyv~v~~~~~~~~~kT~~~~~~~~P~W 52 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG-----------------------------TVDPYVTFSISNRRELARTKVKKDTSNPVW 52 (124)
T ss_pred eEEEEEEEcccCCCcccccCC-----------------------------CCCCeEEEEECCCCcceEeeeecCCCCCcc
Confidence 789999999999997654322 179999999998 56699999999999999
Q ss_pred eeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 106 DEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 106 nE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
||.|.|.+......+.|+|+|.+..+ +++||.+.+++.++..+...+.|...+...+ +..|+|+++++|.|
T Consensus 53 ne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~---k~~G~i~~~l~~~p 124 (124)
T cd04044 53 NETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNG---KPVGELNYDLRFFP 124 (124)
T ss_pred eEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCC---ccceEEEEEEEeCC
Confidence 99999999866788999999998886 8999999999999997766654443334445 46799999999987
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-16 Score=149.63 Aligned_cols=125 Identities=26% Similarity=0.467 Sum_probs=102.6
Q ss_pred eeeEEEEEEEEecCCCCCCCcchh-hhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITES-MRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENP 103 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP 103 (852)
+.|.|+|+|++|++|++.+..+.. .+++ ....+||||++.+++..+.+|+++.++.||
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~---------------------~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P 60 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKK---------------------GSQLLDPYVSIDVDDTHIGKTSTKPKTNSP 60 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhccccc---------------------CccCcCcEEEEEECCEEEeEEeEcCCCCCC
Confidence 579999999999999988753210 0000 001289999999999888999999999999
Q ss_pred eeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccC--CCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 104 FWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILC--GNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 104 ~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~--g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
.|||+|.|++. ....+.|.|+|++.++ +++||++.+++.++.. +...+.|++|. +.|+|+++++|..
T Consensus 61 ~Wne~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 61 VWNEEFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred CcceeEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 99999999996 5578899999988877 8999999999999987 57789999993 4589999999875
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-16 Score=147.51 Aligned_cols=117 Identities=26% Similarity=0.491 Sum_probs=100.3
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|.|+|++|++|++++..+. +||||+|.+++..++||+++.++.||.|||.
T Consensus 2 l~v~vi~a~~L~~~d~~g~------------------------------~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~ 51 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGS------------------------------SDPYCIVKVDNEVIIRTATVWKTLNPFWGEE 51 (121)
T ss_pred EEEEEEEeeCCcCCCCCCC------------------------------CCceEEEEECCEeeeeeeeEcCCCCCcccce
Confidence 8999999999999988776 8999999999887799999999999999999
Q ss_pred EEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCC-CceeeeeeeccCCCCCCCCCCEEEEEEE
Q 045478 109 FCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCG-NEVDDWFPIAGSYGKNLKPFPQLHVSMQ 176 (852)
Q Consensus 109 f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g-~~~~~w~~L~~~~g~~~k~~g~l~l~l~ 176 (852)
|.|++.+....+.|+|+|++.++ +++||++.++++++..+ ...+.|++|...... .+..|+|++.++
T Consensus 52 f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~-~~~~G~i~l~~~ 120 (121)
T cd04054 52 YTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPD-EEVQGEIHLELS 120 (121)
T ss_pred EEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCC-CccccEEEEEEE
Confidence 99999877778899999999988 89999999999988754 347899999542221 235689988764
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.5e-16 Score=143.91 Aligned_cols=113 Identities=25% Similarity=0.301 Sum_probs=99.8
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE 107 (852)
.|+|+|++|++|+.++..+. +||||++++++.. .||+++.++.||.|||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~------------------------------~dPyv~v~~~~~~-~kT~v~~~t~nP~Wne 49 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGL------------------------------SDPYVKFRLGNEK-YKSKVCSKTLNPQWLE 49 (116)
T ss_pred CEEEEEEEEECCCCCCCCCC------------------------------CCcEEEEEECCEe-EecccccCCCCCceeE
Confidence 37899999999999887665 8999999998765 8999999999999999
Q ss_pred EEEEeecCC-CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 108 HFCVPVAHS-VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 108 ~f~~~~~~~-~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
+|.|.+... ...+.|+|+|.+..+ +++||++.+++.++..+...+.|++|.. ..|+|++.+.|+
T Consensus 50 ~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~~ 115 (116)
T cd08376 50 QFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTLT 115 (116)
T ss_pred EEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEec
Confidence 999998775 567899999999887 9999999999999998888999999942 248999988875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-16 Score=147.42 Aligned_cols=120 Identities=23% Similarity=0.442 Sum_probs=101.3
Q ss_pred eEEEEEEEEecCCCCCCC--cchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCe
Q 045478 27 GDLDLSILEAKSLPNMDL--ITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPF 104 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~ 104 (852)
|.|.|+|++|++|++.+. .+. +||||.|.+++.. .||+++.++.||.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~------------------------------~dPyv~v~~~~~~-~kT~~~~~t~~P~ 49 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK------------------------------SDPYAILSVGAQR-FKTQTIPNTLNPK 49 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC------------------------------cCCeEEEEECCEE-EecceecCCcCCc
Confidence 789999999999998876 555 8999999997765 8999999999999
Q ss_pred eeeEEEEeecC-CCceEEEEEEecCCCC-CceeeeEeeeceeccC---CCceeeeeeeccCC-CCCCCCCCEEEEEEEe
Q 045478 105 WDEHFCVPVAH-SVVNLEFHVKDNDILG-AELIGVVQIPVEKILC---GNEVDDWFPIAGSY-GKNLKPFPQLHVSMQY 177 (852)
Q Consensus 105 WnE~f~~~~~~-~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~L~~~~-g~~~k~~g~l~l~l~f 177 (852)
|||+|.|++.. ....+.|+|+|++..+ +++||++.|++.++.. ....+.|++|.+.. ++..+..|+|+|++.|
T Consensus 50 Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 50 WNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999987 4678899999999886 8999999999999873 34467999996552 2234568999998864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.5e-16 Score=145.80 Aligned_cols=120 Identities=24% Similarity=0.423 Sum_probs=99.0
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
|.|.|+|++|++|++++.... ..+ ...+||||+|++++. ++||+++.++.||.||
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~---~~~---------------------~g~~dPyv~v~~~~~-~~kT~~~~~t~~P~W~ 55 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVG---GLV---------------------KGKSDPYVIVRVGAQ-TFKSKVIKENLNPKWN 55 (121)
T ss_pred CeEEEEEEEccCCcccccccc---cCC---------------------CCCcCCEEEEEECCE-eEEccccCCCCCCccc
Confidence 789999999999998875310 000 001899999999884 5999999999999999
Q ss_pred eEEEEeecC-CCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 107 EHFCVPVAH-SVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 107 E~f~~~~~~-~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
|+|.|.+.. ....+.|+|+|++..++++||.+.+++.++..+...+.||+|.+. ..|+|+++++|
T Consensus 56 e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 56 EVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred ceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 999999875 456789999999887889999999999999987778999999432 45899998876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.8e-16 Score=148.32 Aligned_cols=120 Identities=24% Similarity=0.393 Sum_probs=101.4
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe------eEEEeeeecCCC
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA------TVAQTRVISNCE 101 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~------~~~rT~vi~~s~ 101 (852)
+|+|+|++|++|+.++..+. +||||+|++.+. ...+|+++.++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~------------------------------~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~ 50 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA------------------------------SDPYVKISLYDPDGNGEIDSVQTKTIKKTL 50 (133)
T ss_pred CEEEEEEEeECCCcccCCCC------------------------------cCcEEEEEEECCCCCCcccceeeeEEcCCC
Confidence 48999999999999887665 899999999754 247999999999
Q ss_pred CCeeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCc------eeeeeeeccCCCCCCCCCCEEEEE
Q 045478 102 NPFWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNE------VDDWFPIAGSYGKNLKPFPQLHVS 174 (852)
Q Consensus 102 nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~------~~~w~~L~~~~g~~~k~~g~l~l~ 174 (852)
||.|||+|.|.+......+.|+|+|++..+ +++||++.+++.++..+.. .+.||+|... ....+..|+|+++
T Consensus 51 nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-~~~~~~~G~l~~~ 129 (133)
T cd04033 51 NPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-SSKSRVKGHLRLY 129 (133)
T ss_pred CCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-CCCCcceeEEEEE
Confidence 999999999998776677899999999987 8999999999999986543 4589999643 2233678999999
Q ss_pred EEee
Q 045478 175 MQYK 178 (852)
Q Consensus 175 l~f~ 178 (852)
++|.
T Consensus 130 ~~~~ 133 (133)
T cd04033 130 MAYL 133 (133)
T ss_pred EeeC
Confidence 9983
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.2e-16 Score=145.26 Aligned_cols=117 Identities=23% Similarity=0.395 Sum_probs=99.3
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE 107 (852)
.|+|+|++|++|+.++..+. +||||+|++++.. .+|+++.++.||.|||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~------------------------------~DPyv~v~~~~~~-~kT~v~~~t~nP~Wne 49 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGT------------------------------SDPFVRVFYNGQT-LETSVVKKSCYPRWNE 49 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCC------------------------------cCceEEEEECCEE-EeceeecCCCCCccCc
Confidence 48999999999998887665 8999999998766 7999999999999999
Q ss_pred EEEEeecCC-CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCC---CCCCCCEEEEEE
Q 045478 108 HFCVPVAHS-VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGK---NLKPFPQLHVSM 175 (852)
Q Consensus 108 ~f~~~~~~~-~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~---~~k~~g~l~l~l 175 (852)
+|.|.+.+. ...+.|+|+|++..+ +++||.+.+++.++..+...+.|+.|.....+ ..+..|.|+|.|
T Consensus 50 ~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 50 VFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999998875 467899999999888 89999999999999877778999999653322 235567888876
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-16 Score=148.70 Aligned_cols=99 Identities=28% Similarity=0.485 Sum_probs=91.5
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCC
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENP 103 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP 103 (852)
.+.|.|+|+|.+|.+|...|..++ |||||++.+++.+ .||+++.++.||
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~s------------------------------SDPyVVl~lg~q~-lkT~~v~~n~NP 51 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGS------------------------------SDPYVVLELGNQK-LKTRVVYKNLNP 51 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccC------------------------------CCCeEEEEECCee-eeeeeecCCCCC
Confidence 468999999999999998887565 9999999999999 899999999999
Q ss_pred eeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceee
Q 045478 104 FWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDD 153 (852)
Q Consensus 104 ~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~ 153 (852)
+|||.|+|.+.++...+.++|+|+|.++ |++||.|.||+..+........
T Consensus 52 eWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 52 EWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred cccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhhhc
Confidence 9999999999999999999999999999 9999999999999997665544
|
|
| >KOG3603 consensus Predicted phospholipase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-14 Score=153.07 Aligned_cols=337 Identities=15% Similarity=0.179 Sum_probs=187.4
Q ss_pred hHHHHHHHHHhccceEEEEEe--ecc-cceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccc
Q 045478 241 CWEEICHAVLEARHLIYIIGW--SVF-HPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKT 317 (852)
Q Consensus 241 ~~~~l~~aI~~Ak~~I~I~~w--~~~-~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~ 317 (852)
.+++.++.|.+|+++++|..| .+. .++++. +. ....|..+...|.+++.+||.|||.. ....... +
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~-ds----St~~G~~vy~~L~~~~~~gIsiriA~-~~p~~~~-~---- 141 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGVV-DS----STQYGEQVYNTLLALAKSGVKIRIAQ-SYPSGGP-P---- 141 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceeccC-CC----cchHHHHHHHHHHHhccCCeEEEEEe-ecCCCCC-C----
Confidence 457889999999999999854 332 112111 11 01236789999999999999999997 4331111 1
Q ss_pred cccccCCcHHHHhhhcCCC-CEEEec--CCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCC
Q 045478 318 EGVMQTHDEETRKFFKHSS-VNCVLA--PRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDG 394 (852)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~g-v~v~~~--~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~ 394 (852)
......|...| ++++-- ++++. -.-.|-|++|||++ .-|+||.|+.+
T Consensus 142 --------~~d~~~Le~~Gaa~vr~id~~~l~g-------------~GvlHtKf~vvD~k--------hfylGSaNfDW- 191 (456)
T KOG3603|consen 142 --------NADLQVLESLGLAQVRSIDMNRLTG-------------GGVLHTKFWVVDIK--------HFYLGSANFDW- 191 (456)
T ss_pred --------cccHHHHHhCCCceEEeeccccccc-------------CceEEEEEEEEecc--------eEEEeccccch-
Confidence 12234455566 665522 11211 13569999999998 99999999999
Q ss_pred ccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeC--hHHHHHHHHHHHHHhhhhhhhhhhhccccccc
Q 045478 395 RYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEG--PAAYDILINFEQRWRRSTKWREFRLKKVTHWY 472 (852)
Q Consensus 395 r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~G--paa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~ 472 (852)
|-.|+- ..+++.++. ..+.||.+.|+++|........ ++ +.|+
T Consensus 192 rSlTqv-------------------------------kElGv~v~NCpclakDL~kiFe~yW~lg~~~s~--~p--~~wp 236 (456)
T KOG3603|consen 192 RSLTQV-------------------------------KELGVVVRNCPCLAKDLKKIFERYWYLGNAKSL--IP--KKWP 236 (456)
T ss_pred hhccce-------------------------------eEeeeEEecChhHHHHHHHHHHHHhcCCCCCcc--CC--CCCc
Confidence 644421 234555544 4799999999999997544320 00 1121
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHH
Q 045478 473 DDSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYV 552 (852)
Q Consensus 473 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl 552 (852)
...-. ++.. ..|.. . .-+......++..|- ..|. .+|+.. =.+|++
T Consensus 237 ~~~st-----~~N~-~~p~~-----~--~~dg~~~~~y~saSP-----~~~~-----------~~grt~-----DL~ail 282 (456)
T KOG3603|consen 237 NCYST-----HYNK-PLPMK-----I--AVDGTPATPYISASP-----PPLN-----------PSGRTW-----DLEAIL 282 (456)
T ss_pred ccccc-----cccc-cCcce-----e--ecCCCCcceEEccCC-----CCCC-----------CCCCch-----hHHHHH
Confidence 11000 0000 00110 0 001112233333221 1111 123221 145999
Q ss_pred HHHHhccceEEEe-ecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhHHHHHHH
Q 045478 553 KAIRSAQHFIYIE-NQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYW 631 (852)
Q Consensus 553 ~aI~~Ak~~IyIE-nqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~~~~~~~~ 631 (852)
+.|..|++||||. .+||=+..+.-| .+--....|+|.|+- |||+|++++..|++..+.- ..++
T Consensus 283 ~~i~~A~~fv~isVMdY~Ps~~y~k~-------~~fw~iDdaiR~aa~----RgV~vR~lvs~~~~~~~~m---~~~L-- 346 (456)
T KOG3603|consen 283 NTIDEAQKFVYISVMDYFPSTIYSKN-------HRFWEIDDAIRRAAV----RGVKVRLLVSCWKHSEPSM---FRFL-- 346 (456)
T ss_pred HHHHHHhhheeeeehhccchheeecC-------cchhhhhHHHHHHhh----cceEEEEEEeccCCCCchH---HHHH--
Confidence 9999999999997 456643322101 111122334444433 8899999999987644321 1111
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEcc
Q 045478 632 QGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDD 711 (852)
Q Consensus 632 ~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD 711 (852)
+++ +.|...+....|+ ++||-.........+|. -..|+|.||-++
T Consensus 347 --~SL----q~l~~~~~~~~iq--------vk~f~VP~~~~~~ip~~---------------------Rv~HnKymVTe~ 391 (456)
T KOG3603|consen 347 --RSL----QDLSDPLENGSIQ--------VKFFIVPQTNIEKIPFA---------------------RVNHNKYMVTES 391 (456)
T ss_pred --HHH----HHhcCccccCceE--------EEEEEeCCCccccCchh---------------------hhccceeEEeec
Confidence 111 0111122111222 56776543322111222 278999999988
Q ss_pred eeEEecCcCcccCCCCCCCCceeEEEEecC
Q 045478 712 EYVIMGSANINQRSLEGSRDTEIAMGAYQP 741 (852)
Q Consensus 712 ~~~iIGSANln~RSm~~n~DsEi~v~i~d~ 741 (852)
.++||++||-.-=|..+ .-++++|.++
T Consensus 392 -aayIGTSNws~dYf~~T--aG~~ivv~q~ 418 (456)
T KOG3603|consen 392 -AAYIGTSNWSGDYFTST--AGTAIVVRQT 418 (456)
T ss_pred -ceeeeccCCCccceecc--CceEEEEecC
Confidence 79999999987777655 6788888665
|
|
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-15 Score=141.02 Aligned_cols=122 Identities=13% Similarity=0.147 Sum_probs=103.3
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
+..|+|+|++|++|++.+.++. +||||++.+++.. .||+++.++.||+|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~------------------------------~dPyv~v~~~~~~-~kT~v~~~t~nP~W 50 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG------------------------------ADPYVIIKCEGES-VRSPVQKDTLSPEF 50 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC------------------------------cCccEEEEECCEE-EEeCccCCCCCCcc
Confidence 5789999999999999887776 8999999998876 79999999999999
Q ss_pred eeEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCC-CCCCCCCEEEEEEEeeec
Q 045478 106 DEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYG-KNLKPFPQLHVSMQYKPI 180 (852)
Q Consensus 106 nE~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g-~~~k~~g~l~l~l~f~~~ 180 (852)
||.|.|.+......+.|+|||++.+++++||.+.+++..+. .....|++|..... ...+..|.|.+++.+.+.
T Consensus 51 ne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 51 DTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred cceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 99999998888888999999999888999999999998764 33457888853221 234678999999987763
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=142.24 Aligned_cols=113 Identities=27% Similarity=0.431 Sum_probs=96.1
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCCCCeee
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCENPFWD 106 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~nP~Wn 106 (852)
|.|+|++|++|++.+..+. +||||++.+.+ ....||+++.++.||.||
T Consensus 2 L~V~vi~a~~L~~~~~~~~------------------------------~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wn 51 (119)
T cd04036 2 LTVRVLRATNITKGDLLST------------------------------PDCYVELWLPTASDEKKRTKTIKNSINPVWN 51 (119)
T ss_pred eEEEEEEeeCCCccCCCCC------------------------------CCcEEEEEEcCCCCccCccceecCCCCCccc
Confidence 7899999999998876665 89999999964 345899999999999999
Q ss_pred eEEEEeecCCC-ceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 107 EHFCVPVAHSV-VNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 107 E~f~~~~~~~~-~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
|+|.|.+.... ..+.|+|+|.+.+++++||++.+++.++..|...+.|++|. ++ +.|+|++++.+
T Consensus 52 e~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~-~~-----~~g~l~~~~~~ 117 (119)
T cd04036 52 ETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLN-PQ-----GKEELEVEFLL 117 (119)
T ss_pred eEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECC-CC-----CCceEEEEEEe
Confidence 99999987653 45799999998888899999999999999999999999993 22 35777776654
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-15 Score=143.59 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=96.9
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
|.|.|+|++|++|++++.++. +||||++.+++.. .||+++.++.||.||
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~------------------------------~DPYv~v~~~~~~-~kT~vi~~t~nP~Wn 63 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGK------------------------------SDPYCEVSMGSQE-HKTKVVSDTLNPKWN 63 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCC------------------------------cCcEEEEEECCEe-eeccccCCCCCCccC
Confidence 899999999999999887665 8999999998766 899999999999999
Q ss_pred eEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccC-----CCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 107 EHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILC-----GNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 107 E~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~-----g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
|+|.|.+.+.. ..+.|+|||++.++ +++||++.+++.++.. ......|+.+ .+ +..|+|+|++.|
T Consensus 64 e~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~---~~~g~i~l~~~~ 135 (136)
T cd08375 64 SSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL---HE---VPTGEVVVKLDL 135 (136)
T ss_pred ceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc---cc---ccceeEEEEEEe
Confidence 99999997644 56899999999887 8999999999999885 2334566666 22 456899998876
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.8e-16 Score=143.93 Aligned_cols=102 Identities=25% Similarity=0.415 Sum_probs=88.3
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s 100 (852)
-+|.|.|+|++|++|++++ .+. +||||+|++.. ....||+++.++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~------------------------------~dpYVkv~l~p~~~~~~~~kT~v~~~t 58 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGT------------------------------CNSYVKISLSPDKEVRFRQKTSTVPDS 58 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCC------------------------------CCeeEEEEEEeCCCCcceEeCccccCC
Confidence 4789999999999999887 554 89999999964 235799999999
Q ss_pred CCCeeeeEEEEeecCCC--ceEEEEEEecCCCC--CceeeeEeeeceeccCCCceeeeeee
Q 045478 101 ENPFWDEHFCVPVAHSV--VNLEFHVKDNDILG--AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~~--~~l~~~V~d~d~~~--~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
.||.|||+|.|.+.+.. ..+.|+|||.+..+ +++||.+.||+.++..|+.+++||.|
T Consensus 59 ~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 59 ANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 99999999999987632 45789999988764 68999999999999988889999976
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=141.14 Aligned_cols=100 Identities=22% Similarity=0.343 Sum_probs=85.9
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC------eeEEEeeeecCCC
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG------ATVAQTRVISNCE 101 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~------~~~~rT~vi~~s~ 101 (852)
.|+|+|++|++|+.++. +. +||||+|++-+ ....||+++.++.
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~------------------------------~DPYVkV~l~g~~~~~k~~k~kTkv~~~tl 49 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GM------------------------------FRPFVEVNLIGPHLSDKKRKFATKSKNNNW 49 (120)
T ss_pred CEEEEEEECcCCCcccC-CC------------------------------CCCEEEEEEecCCCcccccEeeeEEecCCC
Confidence 48999999999998763 54 89999999832 2347999999999
Q ss_pred CCeeeeEEEEeecCC----CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 102 NPFWDEHFCVPVAHS----VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 102 nP~WnE~f~~~~~~~----~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
||+|||+|.|.+... ...|.|+|+|++..+ +++||++.||+.++..++..+.|++|.
T Consensus 50 nPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 50 SPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred CCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 999999999998743 245799999998877 899999999999999988899999993
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-15 Score=141.41 Aligned_cols=103 Identities=27% Similarity=0.460 Sum_probs=91.5
Q ss_pred CCcEEEEEECCeeEEEeeeecCCCCCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceee
Q 045478 78 SNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDD 153 (852)
Q Consensus 78 sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~ 153 (852)
+||||+|.+.+.. .||+++.++.||+|||+|.|++.+. ...+.|+|+|.+..+ +++||++.+++.++..+.....
T Consensus 15 ~Dpyv~v~~~~~~-~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~ 93 (127)
T cd08373 15 GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEV 93 (127)
T ss_pred CCCEEEEEECCEe-eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEE
Confidence 8999999998776 7999999999999999999999764 567899999999887 8999999999999998888899
Q ss_pred eeeeccCCCCCCCCCCEEEEEEEeeecCCc
Q 045478 154 WFPIAGSYGKNLKPFPQLHVSMQYKPIGQI 183 (852)
Q Consensus 154 w~~L~~~~g~~~k~~g~l~l~l~f~~~~~~ 183 (852)
|++|.+..+++ ..++|+++++|.|...+
T Consensus 94 ~~~L~~~~~~~--~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 94 TEPLLDSNGRP--TGATISLEVSYQPPDGA 121 (127)
T ss_pred EEeCcCCCCCc--ccEEEEEEEEEeCCCCc
Confidence 99998766654 36899999999998654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=140.84 Aligned_cols=100 Identities=30% Similarity=0.535 Sum_probs=88.1
Q ss_pred EEEEEEEecCCCCCCC-cchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee-e
Q 045478 29 LDLSILEAKSLPNMDL-ITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW-D 106 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W-n 106 (852)
|.|+|++|++|++++. .+. +||||+|.+++ ..+||+++.++.||.| |
T Consensus 1 l~V~v~~a~~L~~~d~~~~~------------------------------~Dpyv~v~~~~-~~~kT~v~~~~~nP~W~n 49 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDL------------------------------TDAFVEVKFGS-TTYKTDVVKKSLNPVWNS 49 (110)
T ss_pred CEEEEEEEECCCccccCCCC------------------------------CCceEEEEECC-eeEecceecCCCCCcccC
Confidence 6899999999998874 344 89999999988 4589999999999999 9
Q ss_pred eEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccC---CCceeeeeeecc
Q 045478 107 EHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILC---GNEVDDWFPIAG 159 (852)
Q Consensus 107 E~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~L~~ 159 (852)
|+|.|.+.+. ...+.|+|+|.+.++ +++||++.+++.++.. +..+++||+|++
T Consensus 50 e~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 50 EWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred cEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 9999999874 367899999999987 8999999999999986 456899999975
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-15 Score=142.65 Aligned_cols=101 Identities=30% Similarity=0.512 Sum_probs=88.9
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~ 101 (852)
.|+|.|+|++|++|+.++ .+. +||||+|++.. ....||+++.++.
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~------------------------------~DpyVkv~l~~~~~~~~~~kT~v~~~~~ 60 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSD------------------------------PDPYVKTYLLPDPQKTTKRKTKVVRKTR 60 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCC------------------------------CCCEEEEEEeeCCccCCceeCCccCCCC
Confidence 689999999999999988 555 89999999963 2347999999999
Q ss_pred CCeeeeEEEEee-cC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 102 NPFWDEHFCVPV-AH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 102 nP~WnE~f~~~~-~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
||.|||+|.|++ .. ....+.|+|||++..+ +++||++.|++.++..++..+.||+|
T Consensus 61 nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 61 NPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 999999999987 32 3467899999999888 99999999999999988888999987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-15 Score=139.35 Aligned_cols=104 Identities=31% Similarity=0.477 Sum_probs=94.6
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
|.|+|+|++|++|++.+.++. +||||+|.+++..+++|+++.++.||.||
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~------------------------------~DPYv~v~~~~~~~~kT~~~~~t~~P~Wn 50 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK------------------------------IDPYVRVLVNGIVKGRTVTISNTLNPVWD 50 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC------------------------------cCCEEEEEECCEEeeceeEECCCcCCccC
Confidence 789999999999999887665 89999999988777999999999999999
Q ss_pred eEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCC
Q 045478 107 EHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSY 161 (852)
Q Consensus 107 E~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~ 161 (852)
|.|.|++.+....+.|+|+|.+..+ +++||.+.+++.++..+ ..++||.|++..
T Consensus 51 e~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 51 EVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred ceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 9999999888788999999999988 88999999999999876 678999998654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=4e-15 Score=136.48 Aligned_cols=97 Identities=29% Similarity=0.522 Sum_probs=85.7
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|.|+|++|++|++.+..+. +||||+|.+++.. .||+++.++.||+|||.
T Consensus 2 L~V~v~~A~~L~~~~~~~~------------------------------~dpyv~v~~~~~~-~kT~v~~~t~nP~Wne~ 50 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE------------------------------PSPYVELTVGKTT-QKSKVKERTNNPVWEEG 50 (105)
T ss_pred EEEEEeeecCCCCcccCCC------------------------------CCcEEEEEECCEE-EeCccccCCCCCcccce
Confidence 7899999999998876554 8999999999854 89999999999999999
Q ss_pred EEEeecCC-CceEEEEEEecCCCCCceeeeEeeeceeccCCC--ceeeeeeec
Q 045478 109 FCVPVAHS-VVNLEFHVKDNDILGAELIGVVQIPVEKILCGN--EVDDWFPIA 158 (852)
Q Consensus 109 f~~~~~~~-~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~--~~~~w~~L~ 158 (852)
|.|.+.++ ...+.|+|+|.+. +++||++.|++.++..+. ..+.||+|.
T Consensus 51 f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 51 FTFLVRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred EEEEeCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecC
Confidence 99999875 5678999999876 889999999999998643 578999994
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=6e-15 Score=137.38 Aligned_cols=97 Identities=22% Similarity=0.394 Sum_probs=86.1
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
|.|.|+|++|++|+.++ . .||||.|.+++.+ .+|+++.++ ||.||
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~------------------------------~dPYV~Ik~g~~k-~kT~v~~~~-nP~Wn 46 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---K------------------------------FNTYVTLKVQNVK-STTIAVRGS-QPCWE 46 (127)
T ss_pred ceEEEEEEEeeCCCCCC---C------------------------------CCCeEEEEECCEE-eEeeECCCC-CCcee
Confidence 57999999999997654 2 6899999998876 899999884 99999
Q ss_pred eEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceeccCCCce--eeeeeec
Q 045478 107 EHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEV--DDWFPIA 158 (852)
Q Consensus 107 E~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~--~~w~~L~ 158 (852)
|.|.|.+......++|+|||++.++|++||++.|||.++..+... ..||+|.
T Consensus 47 E~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 47 QDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred eEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 999999988888899999999988899999999999999976655 7899995
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-15 Score=142.04 Aligned_cols=113 Identities=25% Similarity=0.380 Sum_probs=96.8
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeec-CCCCCeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVIS-NCENPFWD 106 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~-~s~nP~Wn 106 (852)
+|+|+|++|++|++.+.++. +||||+|++++....+|+++. ++.||.||
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~------------------------------~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wn 50 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK------------------------------MKVYAVVWIDPSHKQSTPVDRDGGTNPTWN 50 (125)
T ss_pred CEEEEEEEcccCCCCCcccC------------------------------CceEEEEEECCCcccccccccCCCCCCCCC
Confidence 58999999999998876665 899999999884448999985 58999999
Q ss_pred eEEEEeecCC-----CceEEEEEEecCCCC-CceeeeEeeeceeccCCCce-----eeeeeeccCCCCCCCCCCEEEE
Q 045478 107 EHFCVPVAHS-----VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEV-----DDWFPIAGSYGKNLKPFPQLHV 173 (852)
Q Consensus 107 E~f~~~~~~~-----~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~-----~~w~~L~~~~g~~~k~~g~l~l 173 (852)
|.|.|.+.+. ...+.|+|+|++.++ +++||.+.|++.++..+... ..||+|..+.| ++.|.|+|
T Consensus 51 e~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g---~~~G~~~~ 125 (125)
T cd04051 51 ETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG---KPQGVLNF 125 (125)
T ss_pred CEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC---CcCeEEeC
Confidence 9999999877 578899999998866 89999999999999976553 68999987776 56788874
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-15 Score=142.76 Aligned_cols=106 Identities=21% Similarity=0.365 Sum_probs=90.0
Q ss_pred eeeEEEEEEEEecCCCCCC-CcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--e--eEEEeeeecC
Q 045478 25 LHGDLDLSILEAKSLPNMD-LITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--A--TVAQTRVISN 99 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~--~~~rT~vi~~ 99 (852)
-.|.|.|+|++|++|+.++ ..+. +||||++++.. . ...||+++++
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~------------------------------sDPYVKv~Llp~~~~~~k~KT~v~kk 76 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVL------------------------------PAPYVKVYLLEGKKCIAKKKTKIARK 76 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCC------------------------------cCCeEEEEEECCCccccceeceecCC
Confidence 4689999999999998764 3344 89999999943 2 2579999999
Q ss_pred CCCCeeeeEEEEeecCCCceEEEEEE-ecCCCC-CceeeeEeeeceeccCCCceeeeeeeccC
Q 045478 100 CENPFWDEHFCVPVAHSVVNLEFHVK-DNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGS 160 (852)
Q Consensus 100 s~nP~WnE~f~~~~~~~~~~l~~~V~-d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~ 160 (852)
+.||.|||+|.|.+......+.|+|| |.+.++ +++||.+.|++.++..+.....||+|..+
T Consensus 77 tlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 77 TLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 99999999999999866677899999 566666 89999999999999878888999999643
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-15 Score=137.44 Aligned_cols=100 Identities=19% Similarity=0.351 Sum_probs=85.1
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC---eeEEEeeeecCCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG---ATVAQTRVISNCE 101 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~---~~~~rT~vi~~s~ 101 (852)
-.|.|.|+|++|++|+ + .+. +||||+|++.. ....+|++.+++.
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~------------------------------sDPYVKv~L~~~~k~~k~kT~v~rktl 58 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAG------------------------------CECYISGCVSVSEGQKEAQTALKKLAL 58 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCC------------------------------CCeEEEEEEcCCcCccEEEcceecCCC
Confidence 3689999999999998 2 243 89999999963 2357999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
||+|||+|.|.++.. ...+.|+|+|.|.++ +++||++.+++.++..+...+.|-.|
T Consensus 59 nPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 59 HTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 999999999998763 456899999999998 99999999999998767777788754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-15 Score=140.71 Aligned_cols=103 Identities=28% Similarity=0.467 Sum_probs=91.5
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--CeeEEEeeeecCCCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GATVAQTRVISNCENP 103 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~~~~rT~vi~~s~nP 103 (852)
.|.|.|+|++|++|++++..+. +||||+|.+. +..++||+++.++.||
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~------------------------------~dpyv~v~l~~~~~~~~kT~v~~~t~~P 64 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGT------------------------------ADPYCKVRLLPDRSNTKQSKIHKKTLNP 64 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------CCCeEEEEEecCCCCcEeCceEcCCCCC
Confidence 4889999999999999887665 8999999993 3556899999999999
Q ss_pred eeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 104 FWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 104 ~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
.|||+|.|.+... ...+.|+|+|.+.++ +++||++.|++.++..++..+.|++|.
T Consensus 65 ~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 65 EFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9999999998764 357899999999887 999999999999999888899999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-15 Score=139.37 Aligned_cols=104 Identities=32% Similarity=0.502 Sum_probs=91.4
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCEN 102 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~n 102 (852)
-.|.|.|+|++|++|+.++..+. +||||+|.+.+ ..+.||+++.++.|
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~------------------------------~dpyv~v~l~~~~~~~~kT~v~~~t~n 63 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGT------------------------------SDPYVKVYLLPDKKKKFETKVHRKTLN 63 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------CCCEEEEEEEcCCCCceecccCcCCCC
Confidence 35899999999999998887665 89999999853 35689999999999
Q ss_pred CeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 103 PFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 103 P~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
|.|||+|.|.+... ...+.|+|+|.+.++ +++||++.+++.++..|...+.|++|.
T Consensus 64 P~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 64 PVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99999999998752 457899999999887 899999999999998888899999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=137.29 Aligned_cols=116 Identities=22% Similarity=0.347 Sum_probs=94.4
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|+|+|++|++|+.++.++. +||||++++++..++||+++.++.||.|||+
T Consensus 2 l~v~v~~A~~L~~~~~~~~------------------------------~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~ 51 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRL------------------------------PDPFAVITVDGGQTHSTDVAKKTLDPKWNEH 51 (123)
T ss_pred eEEEEEEecCCCccCCCCC------------------------------CCcEEEEEECCccceEccEEcCCCCCcccce
Confidence 7899999999999887766 8999999998666699999999999999999
Q ss_pred EEEeecCCCceEEEEEEecCCCC---CceeeeEeeeceeccCCC-ceeeeeeeccCCCC-CCCCCCEEEEEE
Q 045478 109 FCVPVAHSVVNLEFHVKDNDILG---AELIGVVQIPVEKILCGN-EVDDWFPIAGSYGK-NLKPFPQLHVSM 175 (852)
Q Consensus 109 f~~~~~~~~~~l~~~V~d~d~~~---~~~iG~~~i~l~~l~~g~-~~~~w~~L~~~~g~-~~k~~g~l~l~l 175 (852)
|.|++.. ...+.|+|+|.+..+ +++||++.+++.++.... ....|++|...... .....|+|.+++
T Consensus 52 f~~~~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 52 FDLTVGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EEEEeCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999965 678999999998876 479999999999987433 34679999543321 123356776654
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=135.82 Aligned_cols=114 Identities=23% Similarity=0.364 Sum_probs=96.0
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCCCCee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCENPFW 105 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~nP~W 105 (852)
.|.|+|++|++|+.++..+. +||||+|.+.+ ...+||+++.++.||.|
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~------------------------------~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~W 51 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL------------------------------SDPYVTLVDTNGKRRIAKTRTIYDTLNPRW 51 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC------------------------------CCceEEEEECCCCeeeecccEecCCCCCcc
Confidence 48999999999999887665 89999999864 35689999999999999
Q ss_pred eeEEEEeecCC-CceEEEEEEecCCCC-CceeeeEeeeceeccC---CCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 106 DEHFCVPVAHS-VVNLEFHVKDNDILG-AELIGVVQIPVEKILC---GNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 106 nE~f~~~~~~~-~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
||+|.|++.+. ...+.|+|+|.+..+ +++||++.+++.++.. |...+.|++|. +.|+|++++.+.-
T Consensus 52 ne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~--------~~g~i~l~~~~~~ 122 (126)
T cd04043 52 DEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD--------TQGRLLLRVSMEG 122 (126)
T ss_pred cceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC--------CCCeEEEEEEEee
Confidence 99999999874 567899999999886 8999999999987653 44678899993 2478888887754
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=137.32 Aligned_cols=118 Identities=23% Similarity=0.342 Sum_probs=97.2
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE 107 (852)
.|+|+|++|++|++++..+. +||||+|.+.+.. .||+++.++.||.|||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~-~kT~v~~~t~nP~Wne 50 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL------------------------------SDPFARVSFLNQS-QETEVIKETLSPTWDQ 50 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC------------------------------CCCEEEEEECCee-eEeeeEcCCCCCccCc
Confidence 48999999999999987776 8999999998765 8999999999999999
Q ss_pred EEEEeecCC----------CceEEEEEEecCCCC-CceeeeEee-eceeccC---CCceeeeeeeccCCCCCCCCCCEEE
Q 045478 108 HFCVPVAHS----------VVNLEFHVKDNDILG-AELIGVVQI-PVEKILC---GNEVDDWFPIAGSYGKNLKPFPQLH 172 (852)
Q Consensus 108 ~f~~~~~~~----------~~~l~~~V~d~d~~~-~~~iG~~~i-~l~~l~~---g~~~~~w~~L~~~~g~~~k~~g~l~ 172 (852)
.|.|.+... ...+.|+|+|.+..+ +++||++.+ |+..+.. +.....|++|. ..+ +..|+|.
T Consensus 51 ~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~~~---~~~Geil 126 (135)
T cd04017 51 TLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-KGG---QSAGELL 126 (135)
T ss_pred EEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-cCC---Cchhhee
Confidence 999975321 246799999999888 899999987 5555542 45678999994 333 4679999
Q ss_pred EEEEeeec
Q 045478 173 VSMQYKPI 180 (852)
Q Consensus 173 l~l~f~~~ 180 (852)
|++++.++
T Consensus 127 ~~~~~~~~ 134 (135)
T cd04017 127 AAFELIEV 134 (135)
T ss_pred EEeEEEEe
Confidence 99999876
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=136.55 Aligned_cols=114 Identities=22% Similarity=0.404 Sum_probs=95.4
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE 107 (852)
.|+|+|++|++|+.+|..+. +||||+|.+++.. +||+++.++.||.|||
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~------------------------------~DPyv~v~~~~~~-~kT~~v~~t~~P~Wne 50 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT------------------------------SDPYVTVQVGKTK-KRTKTIPQNLNPVWNE 50 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC------------------------------cCcEEEEEECCEe-eecceecCCCCCccce
Confidence 58999999999999887666 8999999997655 8999999999999999
Q ss_pred EEEEeecCCCceEEEEEEecCCC------------CCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEE
Q 045478 108 HFCVPVAHSVVNLEFHVKDNDIL------------GAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSM 175 (852)
Q Consensus 108 ~f~~~~~~~~~~l~~~V~d~d~~------------~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l 175 (852)
+|.|.+..+...+.|+|+|.+.. ++++||.+.+++.++. ...+.|++|... +...+..|+|.++|
T Consensus 51 ~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~-~~~~~~~G~i~~~~ 127 (127)
T cd04027 51 KFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKR-TDKSAVSGAIRLHI 127 (127)
T ss_pred EEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccC-CCCCcEeEEEEEEC
Confidence 99999987767889999998752 3889999999999875 335789999544 34445688888864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.8e-15 Score=135.29 Aligned_cols=98 Identities=28% Similarity=0.479 Sum_probs=85.4
Q ss_pred eEEEEEEEEecCCCCCCCc-chhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCCCC
Q 045478 27 GDLDLSILEAKSLPNMDLI-TESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCENP 103 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~nP 103 (852)
|+|+|+|++|++|++++.. +. +||||+|.+.. ..+.+|+++.++.||
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~------------------------------~Dpyv~v~~~~~~~~~~kT~v~~~t~nP 50 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS------------------------------SDPYVTASFAKFGKPLYSTRIIRKDLNP 50 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC------------------------------CCccEEEEEccCCCccEeeeeECCCCCC
Confidence 7899999999999998876 55 89999999853 345899999999999
Q ss_pred eeeeEEEEeecCC----CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 104 FWDEHFCVPVAHS----VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 104 ~WnE~f~~~~~~~----~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
.|||+|.|.+... ...+.|+|+|++.++ +++||.+.+++.++.. ..+|+++
T Consensus 51 ~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~---~~~~~~~ 106 (111)
T cd04041 51 VWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIE---DRNWMGR 106 (111)
T ss_pred ccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc---CCCCCcc
Confidence 9999999987653 457899999999987 8999999999999983 4579887
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=136.75 Aligned_cols=103 Identities=25% Similarity=0.442 Sum_probs=88.6
Q ss_pred eeeEEEEEEEEecCCCCCCCc-chhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecC
Q 045478 25 LHGDLDLSILEAKSLPNMDLI-TESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISN 99 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~ 99 (852)
..|+|.|+|++|++|+..+.. +. +||||+|++.. ....||+++.+
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~------------------------------~DpyVkv~l~p~~~~~~~~kT~v~~~ 62 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKR------------------------------SNPYVKTYLLPDKSRQSKRKTSIKRN 62 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCC------------------------------CCcEEEEEEEcCCccccceEeeeeeC
Confidence 358899999999999987642 33 89999999842 23479999999
Q ss_pred CCCCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 100 CENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 100 s~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
+.||.|||+|.|.+... ...+.|+|+|.+.++ +++||.+.|++.++...+..+.|++|
T Consensus 63 t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 63 TTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred CCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999999998652 456899999999887 89999999999999988889999998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-14 Score=132.15 Aligned_cols=112 Identities=31% Similarity=0.550 Sum_probs=89.5
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|.|+|++|++|+.+ +. +||||.|++++..++||+++.+ .||.|||+
T Consensus 2 L~v~vi~a~~l~~~---~~------------------------------~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~ 47 (117)
T cd08383 2 LRLRILEAKNLPSK---GT------------------------------RDPYCTVSLDQVEVARTKTVEK-LNPFWGEE 47 (117)
T ss_pred eEEEEEEecCCCcC---CC------------------------------CCceEEEEECCEEeEecceEEC-CCCcccce
Confidence 78999999999865 33 8999999999877799999999 99999999
Q ss_pred EEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 109 FCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 109 f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
|.|.+.+. ...+.|.++|.+..+ +..+|+ +++..+..+...+.||+|....+. .+..|+|+|+++|
T Consensus 48 f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~--v~l~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~ 117 (117)
T cd08383 48 FVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGK--VALSKLDLGQGKDEWFPLTPVDPD-SEVQGSVRLRARY 117 (117)
T ss_pred EEEecCCccccEEEEEEEEEecccCCCeeEEEE--EEecCcCCCCcceeEEECccCCCC-CCcCceEEEEEEC
Confidence 99999873 456788888877654 455555 555556667888999999654432 2567899999987
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=137.25 Aligned_cols=102 Identities=24% Similarity=0.407 Sum_probs=87.9
Q ss_pred eeEEEEEEEEecCCCCCCCc-chhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCC
Q 045478 26 HGDLDLSILEAKSLPNMDLI-TESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNC 100 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s 100 (852)
.+.|.|+|++|++|+.++.. +. +||||+|++.. ....||+++.++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~------------------------------~dpyVkv~l~p~~~~~~~~kT~v~~~t 63 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQR------------------------------SDPYVKTYLLPDKSNRGKRKTSVKKKT 63 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCC------------------------------CCcEEEEEEEcCCCccccccCccCcCC
Confidence 36899999999999998864 44 89999999942 234799999999
Q ss_pred CCCeeeeEEEEeecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 101 ENPFWDEHFCVPVAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
.||.|||+|.|.+.. ....+.|+|+|.+..+ +++||.+.|++.++..++....||+|
T Consensus 64 ~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 64 LNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred CCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 999999999999864 2457899999999887 89999999999999877778899997
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=141.20 Aligned_cols=102 Identities=26% Similarity=0.413 Sum_probs=80.6
Q ss_pred EEEEEEEEecCCCCCCCcch--hhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 28 DLDLSILEAKSLPNMDLITE--SMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
+|.|+|++|++|+++|..+. .+.+.+ ......+||||+|.+++.+ .||+++.++.||+|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~------------------~~~~~~~DPYV~V~~~g~~-~kT~v~~~t~nPvW 61 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFL------------------GEKKELVDPYVEVSFAGQK-VKTSVKKNSYNPEW 61 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccc------------------cCCCCCcCcEEEEEECCEe-eecceEcCCCCCCc
Confidence 47999999999999985441 000000 0111127999999999887 69999999999999
Q ss_pred eeEEEEeecC--CCceEEEEEEecCCCC-CceeeeEeeeceeccCC
Q 045478 106 DEHFCVPVAH--SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCG 148 (852)
Q Consensus 106 nE~f~~~~~~--~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g 148 (852)
||+|.|++.. ....+.|+|+|.+..+ +++||++.|++.++...
T Consensus 62 NE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 62 NEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred ceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccC
Confidence 9999998653 3567899999999886 99999999999998754
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=132.58 Aligned_cols=97 Identities=19% Similarity=0.343 Sum_probs=80.9
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
|.|.|+|++|++|+..+..+. ...++||||+|++++.. .||+++.++.||+||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~--------------------------~~~~~DPYv~v~~~~~~-~kT~v~~~t~nPvWn 53 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR--------------------------TGFDMDPFVIISFGRRV-FRTSWRRHTLNPVFN 53 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC--------------------------CCCccCceEEEEECCEe-EeeeeecCCCCCccc
Confidence 789999999999998764321 00027999999997654 799999999999999
Q ss_pred eEEEEeecCCC--ceEEEEEEecCCCC-CceeeeEeeeceeccCCCc
Q 045478 107 EHFCVPVAHSV--VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNE 150 (852)
Q Consensus 107 E~f~~~~~~~~--~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~ 150 (852)
|.|.|++.+.. ..+.|+|||++..+ +++||++.+++.++..+..
T Consensus 54 e~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 54 ERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred ceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhCC
Confidence 99999986533 46799999999888 9999999999999997654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-14 Score=132.32 Aligned_cols=98 Identities=26% Similarity=0.476 Sum_probs=85.8
Q ss_pred CCCcEEEEEECCeeEEEeeeecCCCCCeeeeEEEEeecCC-CceEEEEEEecCCCCCceeeeEeeeceeccC-CCceeee
Q 045478 77 TSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHS-VVNLEFHVKDNDILGAELIGVVQIPVEKILC-GNEVDDW 154 (852)
Q Consensus 77 ~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~f~~~~~~~-~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~-g~~~~~w 154 (852)
.+||||.|.+++...++|+++.++.||+|||+|.|.+.+. ...+.|+|+|.+.+++++||++.++|.++.. +...+.|
T Consensus 12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w 91 (111)
T cd04052 12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQW 91 (111)
T ss_pred CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcccee
Confidence 3899999999987779999999999999999999999875 4668999999998889999999999999864 4556899
Q ss_pred eeeccCCCCCCCCCCEEEEEEEeeec
Q 045478 155 FPIAGSYGKNLKPFPQLHVSMQYKPI 180 (852)
Q Consensus 155 ~~L~~~~g~~~k~~g~l~l~l~f~~~ 180 (852)
|+|.+ ++.|+|+++++|+|+
T Consensus 92 ~~L~~------~~~G~i~~~~~~~p~ 111 (111)
T cd04052 92 FPLSG------NGQGRIRISALWKPV 111 (111)
T ss_pred EECCC------CCCCEEEEEEEEecC
Confidence 99953 356999999999986
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-14 Score=138.51 Aligned_cols=102 Identities=23% Similarity=0.376 Sum_probs=84.6
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEeeeecCCCCC
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISNCENP 103 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~vi~~s~nP 103 (852)
.|.|+|++|++|+. ..+. +||||+|.+.+. ...||+++.++.||
T Consensus 1 kL~V~Vi~ArnL~~--~~g~------------------------------sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP 48 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGT------------------------------CDPYASVTLIYSNKKQDTKRTKVKKKTNNP 48 (148)
T ss_pred CEEEEEEeCcCCCC--CCCC------------------------------CCceEEEEEeCCcccCcccCCccEeCCCCC
Confidence 38999999999986 3343 899999999752 34799999999999
Q ss_pred eeeeEEEEeecC----------------CCceEEEEEEecCCCC-CceeeeEeeeceeccCC-CceeeeeeeccCC
Q 045478 104 FWDEHFCVPVAH----------------SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCG-NEVDDWFPIAGSY 161 (852)
Q Consensus 104 ~WnE~f~~~~~~----------------~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g-~~~~~w~~L~~~~ 161 (852)
+|||+|.|.+.. ....+.|+|||.+..+ +++||++.||+..+..+ ...+.||+|....
T Consensus 49 ~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 49 QFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred ccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 999999999841 1245799999999876 99999999999999976 6678999995443
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-14 Score=135.87 Aligned_cols=101 Identities=26% Similarity=0.443 Sum_probs=88.5
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCCC
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCEN 102 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~n 102 (852)
+.|.|+|++|++|++++..+. +||||+|.+.. ....||++++++.|
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~~~n 65 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDI------------------------------PDPYVRLYLLPDKSKSTRRKTSVKKDNLN 65 (127)
T ss_pred CEEEEEEEEEECCCCccCCCC------------------------------CCceEEEEEEcCCCCCceEecccccCCCC
Confidence 789999999999999887665 89999999853 34589999999999
Q ss_pred CeeeeEEEEeecCC---CceEEEEEEecCCC--C-CceeeeEeeeceeccCCCceeeeeee
Q 045478 103 PFWDEHFCVPVAHS---VVNLEFHVKDNDIL--G-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 103 P~WnE~f~~~~~~~---~~~l~~~V~d~d~~--~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
|+|||+|.|.+... ...+.|+|+|.+.+ + +++||.+.|++.++..+...++||+|
T Consensus 66 P~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 66 PVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred CEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 99999999998643 35789999999875 4 89999999999999888888999997
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-14 Score=134.72 Aligned_cols=100 Identities=22% Similarity=0.402 Sum_probs=90.0
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecC-CCCCee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISN-CENPFW 105 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~-s~nP~W 105 (852)
|.|+|+|++|++|++++.++. +||||+|++++.. .+|+++.+ +.||.|
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~------------------------------~dpyv~v~~~~~~-~~T~~~~~~t~nP~W 49 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK------------------------------IDPYVIIQCRTQE-RKSKVAKGDGRNPEW 49 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC------------------------------cCceEEEEECCEe-eeeeEcCCCCCCCcc
Confidence 789999999999999887665 8999999998765 78998875 899999
Q ss_pred eeEEEEeecCC----CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 106 DEHFCVPVAHS----VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 106 nE~f~~~~~~~----~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
||+|.|.+..+ ...+.|+|+|.+.++ +++||.+.+++.++..++..+.|++|
T Consensus 50 ne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l 106 (124)
T cd04049 50 NEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAEL 106 (124)
T ss_pred cceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence 99999999876 467899999999886 89999999999999988888999998
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.2e-14 Score=131.20 Aligned_cols=111 Identities=29% Similarity=0.481 Sum_probs=94.8
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|+|+|++|++|++.+..+. +||||+|.+.+..+++|+++.++.+|.|||+
T Consensus 1 l~v~vi~a~~L~~~~~~~~------------------------------~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~ 50 (115)
T cd04040 1 LTVDVISAENLPSADRNGK------------------------------SDPFVKFYLNGEKVFKTKTIKKTLNPVWNES 50 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC------------------------------CCCeEEEEECCCcceeeceecCCCCCccccc
Confidence 5899999999998876655 8999999998777789999999999999999
Q ss_pred EEEeecC-CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEE
Q 045478 109 FCVPVAH-SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLH 172 (852)
Q Consensus 109 f~~~~~~-~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~ 172 (852)
|.|.+.. ....+.|+|+|.+..+ +++||++.+++.++..+...+.|++|....+ ...|.|.
T Consensus 51 f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~---~~~~~~~ 113 (115)
T cd04040 51 FEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGG---GKLGAVF 113 (115)
T ss_pred EEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCC---ccCceEE
Confidence 9999876 3567899999999887 8999999999999998888899999954433 3445553
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-14 Score=135.36 Aligned_cols=102 Identities=25% Similarity=0.380 Sum_probs=86.8
Q ss_pred eeEEEEEEEEecCCCCCCCc-chhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEeeeecCC
Q 045478 26 HGDLDLSILEAKSLPNMDLI-TESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISNC 100 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~vi~~s 100 (852)
.+.|.|+|++|++|+.++.. +. +||||++++... ...||+++.++
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~------------------------------~dpYVkv~llp~~~~~~k~kT~v~~~t 63 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKK------------------------------CHPYVKVCLLPDKSHNSKRKTAVKKGT 63 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCC------------------------------CCeEEEEEEEeCCcccceeecccccCC
Confidence 47899999999999988764 44 899999998532 34699999999
Q ss_pred CCCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccC---CCceeeeeee
Q 045478 101 ENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILC---GNEVDDWFPI 157 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~L 157 (852)
.||+|||+|.|.+... ...+.|+|+|.+.++ +++||++.|++.++.. +.....||+|
T Consensus 64 ~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 64 VNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred CCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9999999999998653 467899999999877 8999999999999864 3467899997
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-14 Score=134.20 Aligned_cols=101 Identities=29% Similarity=0.478 Sum_probs=85.6
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|+.++..+. +||||+|.+.+ ..+.||+++.++.
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~ 64 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSL------------------------------RNPYVKVYLLPDRSEKSKRRTKTVKKTL 64 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCC------------------------------CCCEEEEEEccCCCccccccccccCCCC
Confidence 4789999999999998887665 89999999964 2457999999999
Q ss_pred CCeeeeEEEEeecC----CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 102 NPFWDEHFCVPVAH----SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 102 nP~WnE~f~~~~~~----~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
||.|||+|.|.+.. ....+.|+|+|.+..+ +++||++.+++.+.. ......||+|
T Consensus 65 nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 65 NPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred CCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 99999999998654 2467899999999887 899999999999843 3335689998
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd00138 PLDc Phospholipase D | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.5e-14 Score=140.25 Aligned_cols=145 Identities=19% Similarity=0.209 Sum_probs=108.8
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
.++++.++++|.+|+++|+|+.|.+.+.. . .....|.++|.+++++||+|+||+++.. ....
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~---~--------~~~~~l~~~L~~a~~rGv~V~il~~~~~-~~~~------ 81 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI---T--------EYGPVILDALLAAARRGVKVRILVDEWS-NTDL------ 81 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc---c--------ccchHHHHHHHHHHHCCCEEEEEEcccc-cCCc------
Confidence 67899999999999999999999876532 0 1136999999999999999999984433 2110
Q ss_pred ccccCCcHHHHhhhcCC---CCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCc
Q 045478 319 GVMQTHDEETRKFFKHS---SVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGR 395 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~~~---gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r 395 (852)
.........|... ++++...+.... ...++|+|++|||++ ++++||.|+.+..
T Consensus 82 ----~~~~~~~~~l~~~~~~~i~~~~~~~~~~------------~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~ 137 (176)
T cd00138 82 ----KISSAYLDSLRALLDIGVRVFLIRTDKT------------YGGVLHTKLVIVDDE--------TAYIGSANLDGRS 137 (176)
T ss_pred ----hHHHHHHHHHHHhhcCceEEEEEcCCcc------------cccceeeeEEEEcCC--------EEEEECCcCChhh
Confidence 0012334445543 788775432110 135899999999998 9999999999944
Q ss_pred cCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh--HHHHHHHHHHHHHhhh
Q 045478 396 YDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP--AAYDILINFEQRWRRS 457 (852)
Q Consensus 396 ~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp--aa~dl~~~F~~rW~~~ 457 (852)
+ ..++|+.+.+++| +|.++.+.|.+.|+..
T Consensus 138 ~--------------------------------~~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 138 L--------------------------------TLNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred h--------------------------------hhhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 3 1466899999999 7999999999999963
|
Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers. |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-14 Score=133.88 Aligned_cols=102 Identities=29% Similarity=0.540 Sum_probs=88.0
Q ss_pred eeEEEEEEEEecCCCCCC-CcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--e--eEEEeeeecCC
Q 045478 26 HGDLDLSILEAKSLPNMD-LITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--A--TVAQTRVISNC 100 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~--~~~rT~vi~~s 100 (852)
.|.|.|+|++|++|+.++ ..+. +||||+|.+.. . ..+||+++.++
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t 62 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKR------------------------------SNPYVKVYLLPDKSKQSKRKTSVKKNT 62 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCC------------------------------CCcEEEEEEecCCCcCceeeccccCCC
Confidence 588999999999999887 4443 89999999842 1 45899999999
Q ss_pred CCCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 101 ENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
.||.|||+|.|.+... ...+.|+|+|.+..+ +++||++.+++.++..+...+.||+|
T Consensus 63 ~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 63 TNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 9999999999997653 457899999999887 89999999999999888888999986
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.5e-14 Score=132.64 Aligned_cols=103 Identities=29% Similarity=0.426 Sum_probs=88.7
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--CeeEEEeeeecCCCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GATVAQTRVISNCENP 103 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~~~~rT~vi~~s~nP 103 (852)
.+.|.|+|++|++|+.++..+. +||||+|.+. +....||+++.++.||
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~------------------------------~dpyv~v~~~~~~~~~~kT~v~~~t~~P 64 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGT------------------------------SDPFVKIYLLPDKKHKLETKVKRKNLNP 64 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCC------------------------------CCceEEEEECCCCCcceeeeeecCCCCC
Confidence 4679999999999998887665 8999999993 3445899999999999
Q ss_pred eeeeEEEEeecC----CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 104 FWDEHFCVPVAH----SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 104 ~WnE~f~~~~~~----~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
.|||+|.|.+.. ....+.|+|+|.+..+ +++||++.|++.++..+...+.|++|.
T Consensus 65 ~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 65 HWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred ccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999999997532 2346899999999887 899999999999999888899999983
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-14 Score=133.33 Aligned_cols=102 Identities=21% Similarity=0.369 Sum_probs=86.7
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC-----eeEEEeeeecCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG-----ATVAQTRVISNC 100 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~-----~~~~rT~vi~~s 100 (852)
.+.|.|+|++|+||++++..+. +||||++++-. ....||+++.++
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~------------------------------~dpyVKv~Llp~~~~~~~~~kT~v~~~t 62 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPEN------------------------------SKVYVRVALLPCSSSTSCLFRTKALEDQ 62 (124)
T ss_pred CCEEEEEEeEecCCcccccCCC------------------------------CCeEEEEEEccCCCCCCceEEcCccCCC
Confidence 5789999999999998865444 89999999842 135899999999
Q ss_pred CCCeeeeEEEEeecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccC-CCceeeeeee
Q 045478 101 ENPFWDEHFCVPVAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILC-GNEVDDWFPI 157 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~-g~~~~~w~~L 157 (852)
.||+|||+|.|++.+ ....+.|+||+.+..+ +++||.+.|++.++.. +.....||+|
T Consensus 63 ~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 63 DKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999999999999876 3567899999999887 8999999999999954 4457889975
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-14 Score=137.16 Aligned_cols=108 Identities=20% Similarity=0.317 Sum_probs=92.0
Q ss_pred eeEEEEEEEEecCCCCCCCc--chhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEeeeecC
Q 045478 26 HGDLDLSILEAKSLPNMDLI--TESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISN 99 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~vi~~ 99 (852)
-|.|.|+|++|+||+.++.. +. +||||+|++... ...||+++++
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~------------------------------~DpYVKv~l~~~~~k~~kkkT~v~k~ 63 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLG------------------------------IDVSVKVTLKHQNAKLKKKQTKRAKH 63 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCC------------------------------CCeEEEEEEEcCCcccceeccceeeC
Confidence 58899999999999988742 32 899999998642 2469999999
Q ss_pred CCCCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCC
Q 045478 100 CENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNL 165 (852)
Q Consensus 100 s~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~ 165 (852)
+.||+|||+|.|.+++. ...+.|+|+|.+.++ +++||++.+++.. .|+..++|..++...+++.
T Consensus 64 t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~v 131 (138)
T cd08407 64 KINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQI 131 (138)
T ss_pred CCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCch
Confidence 99999999999998863 456899999999988 9999999999974 6888899999988777653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-14 Score=136.71 Aligned_cols=107 Identities=27% Similarity=0.401 Sum_probs=91.9
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|++++..+. +||||+|.+.. ....||+++.++.
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~------------------------------~DpyV~v~l~~~~~~~~~~kT~v~~~t~ 61 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGY------------------------------SDPFVKLYLKPDAGKKSKHKTQVKKKTL 61 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCC------------------------------CCcEEEEEEEcCCCccCCceeeeEeccC
Confidence 4889999999999999887665 89999999853 2457999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+... ...+.|+|+|.+..+ +++||.+.|++.. .|+..+.|++++...+++
T Consensus 62 nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~ 126 (133)
T cd08384 62 NPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKK 126 (133)
T ss_pred CCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCC
Confidence 999999999998753 356899999999877 8999999999974 567788999998776655
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.2e-14 Score=136.50 Aligned_cols=99 Identities=28% Similarity=0.498 Sum_probs=86.7
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe---------------
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA--------------- 89 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~--------------- 89 (852)
..+.|.|+|++|++|+++|..+. +||||+|.+...
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~------------------------------~DPyv~v~l~~~~~~~~~~~~~~~~~~ 75 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGF------------------------------SDPYCMLGIVPASRERNSEKSKKRKSH 75 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCC------------------------------CCceEEEEEcccccccccccccccccc
Confidence 46899999999999999987776 899999998532
Q ss_pred -------------eEEEeeeecCCCCCeeeeEEEEeecCC-CceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeee
Q 045478 90 -------------TVAQTRVISNCENPFWDEHFCVPVAHS-VVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWF 155 (852)
Q Consensus 90 -------------~~~rT~vi~~s~nP~WnE~f~~~~~~~-~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~ 155 (852)
.+++|+++.++.||.|||+|.|.+.+. ...+.|+|+|.+ +++||++.+++.++. +..+++||
T Consensus 76 ~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~-~~~~d~W~ 151 (153)
T cd08676 76 RKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLP-SCGLDSWF 151 (153)
T ss_pred cccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhC-CCCCCCeE
Confidence 357999999999999999999999764 467899999987 889999999999998 45589999
Q ss_pred ee
Q 045478 156 PI 157 (852)
Q Consensus 156 ~L 157 (852)
+|
T Consensus 152 ~L 153 (153)
T cd08676 152 KL 153 (153)
T ss_pred eC
Confidence 86
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=132.94 Aligned_cols=98 Identities=17% Similarity=0.294 Sum_probs=81.8
Q ss_pred CCcEEEEEE----CCeeEEEeeeecCCCCCeeeeEEEEeecCC---------CceEEEEEEecCCC-C-CceeeeEeeec
Q 045478 78 SNPYVSVCL----SGATVAQTRVISNCENPFWDEHFCVPVAHS---------VVNLEFHVKDNDIL-G-AELIGVVQIPV 142 (852)
Q Consensus 78 sdpYv~v~l----~~~~~~rT~vi~~s~nP~WnE~f~~~~~~~---------~~~l~~~V~d~d~~-~-~~~iG~~~i~l 142 (852)
+||||++++ ......||+++++|.||+|||+|.|.+... ...+.|+|||.+.+ + |++||++.+++
T Consensus 25 ~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L 104 (155)
T cd08690 25 LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKL 104 (155)
T ss_pred CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEc
Confidence 899999997 333568999999999999999999998654 24589999999886 3 99999999999
Q ss_pred eeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 143 EKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 143 ~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
..+.....+..|++|++... +.+|+|+++++.-
T Consensus 105 ~~l~~~~~~~~~~~L~~~~k---~~Gg~l~v~ir~r 137 (155)
T cd08690 105 EPLETKCEIHESVDLMDGRK---ATGGKLEVKVRLR 137 (155)
T ss_pred ccccccCcceEEEEhhhCCC---CcCCEEEEEEEec
Confidence 99987777888999975332 4688999988854
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-14 Score=135.68 Aligned_cols=108 Identities=33% Similarity=0.482 Sum_probs=91.7
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--Ce--eEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GA--TVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~--~~~rT~vi~~s 100 (852)
.+|.|+|+|++|++|++++.++. +||||+|.+. +. ...||+++.++
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~------------------------------~dpyvkv~l~~~~~~~~~~kT~v~~~t 61 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGF------------------------------SDPYVKVSLMCEGRRLKKKKTSVKKNT 61 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCC------------------------------CCceEEEEEEeCCcccceecCCcccCC
Confidence 46899999999999999988776 8999999984 22 35799999999
Q ss_pred CCCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 101 ENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
.||.|||+|.|.+... ...+.|+|+|.+.++ +++||++.|++. ..++..++|++++..++++
T Consensus 62 ~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~ 127 (134)
T cd08403 62 LNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKP 127 (134)
T ss_pred CCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCe
Confidence 9999999999997643 235899999999988 999999999987 4466678999998877765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=130.23 Aligned_cols=102 Identities=29% Similarity=0.375 Sum_probs=84.9
Q ss_pred eeEEEEEEEEecCCCCCCCc-chhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLI-TESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCEN 102 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~n 102 (852)
.++|.|+|++|++|+.++.. +. +||||+|.+.. ....||+++.++.|
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~------------------------------~DpyV~v~l~~~~~~~~kT~v~~~t~n 64 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGT------------------------------SDPYVKLQLLPEKEHKVKTRVLRKTRN 64 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCC------------------------------cCCEEEEEEeCCcCceeeccEEcCCCC
Confidence 46899999999999988765 43 89999999853 34579999999999
Q ss_pred CeeeeEEEEe-ecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCC--Cceeeeeee
Q 045478 103 PFWDEHFCVP-VAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCG--NEVDDWFPI 157 (852)
Q Consensus 103 P~WnE~f~~~-~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g--~~~~~w~~L 157 (852)
|.|||+|.|. +.. ....+.|+|+|.+.++ +++||++.|++.++..+ +....|++|
T Consensus 65 P~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 65 PVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred CceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 9999999994 332 2346899999998887 99999999999999644 667889987
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=127.65 Aligned_cols=97 Identities=23% Similarity=0.366 Sum_probs=83.7
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE 107 (852)
.|+|+|++|++|+ .+. +||||+|++++.+ .||+++.++.||.|||
T Consensus 5 ~l~V~v~~a~~L~----~~~------------------------------~dpyv~v~~~~~~-~kT~~~~~t~nP~wne 49 (111)
T cd04011 5 QVRVRVIEARQLV----GGN------------------------------IDPVVKVEVGGQK-KYTSVKKGTNCPFYNE 49 (111)
T ss_pred EEEEEEEEcccCC----CCC------------------------------CCCEEEEEECCEe-eeeeEEeccCCCcccc
Confidence 4899999999998 222 8999999999876 7999999999999999
Q ss_pred EEEEeecCCC-----ceEEEEEEecCCCC-CceeeeEeeeceeccCC---Cceeeeeeecc
Q 045478 108 HFCVPVAHSV-----VNLEFHVKDNDILG-AELIGVVQIPVEKILCG---NEVDDWFPIAG 159 (852)
Q Consensus 108 ~f~~~~~~~~-----~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g---~~~~~w~~L~~ 159 (852)
+|.|.+..+. ..+.|+|+|.+.++ +++||++.+++.++..+ .....|++|.+
T Consensus 50 ~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 50 YFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred EEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 9999976543 56899999999887 89999999999999865 34688999965
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.9e-14 Score=135.03 Aligned_cols=107 Identities=26% Similarity=0.442 Sum_probs=91.0
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--e--eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--A--TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~--~~~rT~vi~~s~ 101 (852)
.+.|.|+|++|++|+.++.++. +||||+|.+.. . ...||+++.++.
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~------------------------------~Dpyv~v~l~~~~~~~~~~kT~v~k~t~ 63 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGL------------------------------ADPYVKVNLYYGKKRISKKKTHVKKCTL 63 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC------------------------------CCeEEEEEEEcCCceeeeEcCccccCCC
Confidence 5789999999999999887765 89999999843 2 246899999999
Q ss_pred CCeeeeEEEEeecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+.. ....+.|+|+|.+.++ +++||++.+++.. .+...+.|++|.+..|++
T Consensus 64 nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~ 128 (136)
T cd08404 64 NPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQ 128 (136)
T ss_pred CCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCe
Confidence 99999999999865 2356799999999887 9999999999988 467788999998776754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-14 Score=134.95 Aligned_cols=107 Identities=25% Similarity=0.401 Sum_probs=91.3
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--Ce--eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GA--TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~--~~~rT~vi~~s~ 101 (852)
.|+|.|+|++|++|+.++..+. +||||+|.+. +. ...||+++.++.
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~------------------------------~dpyV~v~l~~~~~~~~~~kT~v~~~t~ 63 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGT------------------------------SDPYVKVWLMYKDKRVEKKKTVIKKRTL 63 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC------------------------------CCceEEEEEEeCCCccccccCcceeCCC
Confidence 4889999999999998887665 8999999983 22 347999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+... ...+.|+|+|.+.++ +++||++.|++.+. |...++|++|+...+++
T Consensus 64 ~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~ 128 (136)
T cd08405 64 NPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQP 128 (136)
T ss_pred CCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCc
Confidence 999999999987532 356899999999887 89999999999876 67788999998877765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-14 Score=135.90 Aligned_cols=108 Identities=31% Similarity=0.477 Sum_probs=91.7
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--e--eEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--A--TVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~--~~~rT~vi~~s 100 (852)
.+|.|.|+|++|++|++++..+. +||||+|.+.. . ...+|+++.++
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t 62 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGL------------------------------SDPYVKIHLMQNGKRLKKKKTTIKKRT 62 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCC------------------------------CCCeEEEEEEECCcccceeeccceeCC
Confidence 46899999999999999887665 89999999842 2 34789999999
Q ss_pred CCCeeeeEEEEeecCCC---ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 101 ENPFWDEHFCVPVAHSV---VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~~---~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
.||.|||+|.|++.... ..+.|+|+|.+.++ +++||.+.|++.. .|...++|++|+...+++
T Consensus 63 ~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~ 128 (136)
T cd08402 63 LNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRP 128 (136)
T ss_pred CCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCe
Confidence 99999999999986532 46899999999888 8999999999975 477789999998776655
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.3e-14 Score=133.84 Aligned_cols=107 Identities=22% Similarity=0.304 Sum_probs=90.1
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--ee--EEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--AT--VAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~--~~rT~vi~~s~ 101 (852)
.+.|.|+|++|++|+.++..+. +||||+|++.. .+ ..||++++++.
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~------------------------------~DpyVkv~l~~~~~~~~k~kT~v~k~t~ 63 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTT------------------------------ADPFVKVYLLQDGRKISKKKTSVKRDDT 63 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------CCeEEEEEEEeCCccccccCCccccCCC
Confidence 4789999999999998886655 89999999842 22 35899999999
Q ss_pred CCeeeeEEEEeecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||+|||+|.|.+.. ....+.|+|+|.+..+ +++||++.|+.. ..|+..++|..++...+++
T Consensus 64 nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~ 128 (136)
T cd08406 64 NPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKP 128 (136)
T ss_pred CCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCe
Confidence 99999999999875 3466899999999887 999999999765 4677789999998877755
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >PHA02820 phospholipase-D-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-13 Score=152.53 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=103.5
Q ss_pred CCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCC
Q 045478 505 ENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGA 584 (852)
Q Consensus 505 ~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~ 584 (852)
.+|.+|++.|++.+- .|+. .-.+.+++|+++|.+||++|+|+++||+++. ..
T Consensus 4 ~~~~~~~vesiP~~~--~~~~-----------------~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d-----~~---- 55 (424)
T PHA02820 4 DNTIAVITETIPIGM--QFDK-----------------VYLSTFNFWREILSNTTKTLDISSFYWSLSD-----EV---- 55 (424)
T ss_pred cccEEEEEEecCCCC--CCCC-----------------CCCCHHHHHHHHHHhhCcEEEEEeEEEecCc-----cc----
Confidence 457889999997653 2321 1257899999999999999999999999421 00
Q ss_pred CCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEE
Q 045478 585 DNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSF 664 (852)
Q Consensus 585 ~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f 664 (852)
....+..+..+|.++ +.+||+|+|+++.. + ... . ..+.|+++|+++. .
T Consensus 56 ~~~~G~~i~~aL~~a--A~rGV~VRIL~d~~--~---~~~----------~-------~~~~L~~aGv~v~--------~ 103 (424)
T PHA02820 56 GTNFGTMILNEIIQL--PKRGVRVRIAVNKS--N---KPL----------K-------DVELLQMAGVEVR--------Y 103 (424)
T ss_pred cchhHHHHHHHHHHH--HHCCCEEEEEECCC--C---Cch----------h-------hHHHHHhCCCEEE--------E
Confidence 011245566677666 45889999999842 1 110 0 1467889998752 2
Q ss_pred eeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEec
Q 045478 665 YCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQ 740 (852)
Q Consensus 665 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d 740 (852)
|.... +. ...+|+|+||||+++++|||+||+.||+..| .|+++.+.+
T Consensus 104 ~~~~~-------~~--------------------~~~~HrK~~VIDg~~~~iGS~Nid~rsl~~n--~E~gv~i~~ 150 (424)
T PHA02820 104 IDITN-------IL--------------------GGVLHTKFWISDNTHIYLGSANMDWRSLTQV--KELGIAIFN 150 (424)
T ss_pred EecCC-------CC--------------------cccceeeEEEECCCEEEEeCCcCChhhhhhC--CceEEEEec
Confidence 22110 11 1379999999999999999999999999855 899988865
|
|
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=128.45 Aligned_cols=102 Identities=26% Similarity=0.439 Sum_probs=88.3
Q ss_pred eeEEEEEEEEecCCCCCC-CcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--CeeEEEeeeecCCCC
Q 045478 26 HGDLDLSILEAKSLPNMD-LITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GATVAQTRVISNCEN 102 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~~~~rT~vi~~s~n 102 (852)
.+.|.|+|++|++|++++ .++. +||||+|++. +...+||+++.++.|
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~------------------------------~dpyV~v~l~~~~~~~~~T~v~~~~~~ 62 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAH------------------------------CDPFVKVCLLPDERRSLQSKVKRKTQN 62 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCC------------------------------CCcEEEEEEeeCCCCceEeeeEcCCCC
Confidence 578999999999999887 4444 8999999984 344589999999999
Q ss_pred CeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 103 PFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 103 P~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
|.|||.|.|.+... ...+.|+|+|.+..+ +++||++.+++.++........|++|
T Consensus 63 P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L 121 (123)
T cd08390 63 PNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDL 121 (123)
T ss_pred CccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeC
Confidence 99999999997653 356899999998887 89999999999999987778899998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-13 Score=131.38 Aligned_cols=93 Identities=28% Similarity=0.537 Sum_probs=83.8
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
|.|.|+|++|++|+..+. +. +||||+|.+++.. .||+++.++.||+||
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~------------------------------sDPYV~v~~g~~~-~kT~vvk~t~nP~Wn 49 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS------------------------------SDPYVVLTLGNQK-VKTRVIKKNLNPVWN 49 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC------------------------------cCcEEEEEECCEE-EEeeeEcCCCCCeec
Confidence 899999999999998775 43 8999999998766 899999999999999
Q ss_pred eEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCce
Q 045478 107 EHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEV 151 (852)
Q Consensus 107 E~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~ 151 (852)
|+|.|.+.++...+.|+|+|++.++ +++||.+.+++.++......
T Consensus 50 E~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 50 EELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKL 95 (145)
T ss_pred ccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhhh
Confidence 9999999988888999999999888 89999999999998865433
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-13 Score=131.07 Aligned_cols=99 Identities=20% Similarity=0.414 Sum_probs=86.4
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC---eeEEEeeeecCCCCCee
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG---ATVAQTRVISNCENPFW 105 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~---~~~~rT~vi~~s~nP~W 105 (852)
|.|+|++|++|+.+ ..+. +||||+|.+.. ..+.||+++.++.||.|
T Consensus 1 L~V~Vi~A~~L~~~-~~g~------------------------------~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~W 49 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT------------------------------CDPFARVTLNYSSKTDTKRTKVKKKTNNPRF 49 (137)
T ss_pred CEEEEEEccCCCcc-cCCC------------------------------CCcEEEEEEecCCcCCeeccceeeCCCCCCc
Confidence 67999999999987 5554 89999999984 45589999999999999
Q ss_pred eeEEEEeecCC----------------CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 106 DEHFCVPVAHS----------------VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 106 nE~f~~~~~~~----------------~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
||+|.|++... ...+.|+|+|.+..+ +++||++.|++.++..+.....|++|.
T Consensus 50 ne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~ 119 (137)
T cd08675 50 DEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQ 119 (137)
T ss_pred ceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecC
Confidence 99999998764 356899999999886 999999999999998777789999994
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-13 Score=135.45 Aligned_cols=103 Identities=25% Similarity=0.399 Sum_probs=84.6
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC----CeeEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS----GATVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~----~~~~~rT~vi~~s 100 (852)
..|.|.|+|++|++|+.++..+. +||||+|.+. +..+.||+++.++
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~------------------------------~DPYVkv~l~~~~~~~~~~kT~vi~~t 74 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT------------------------------SDSFVKCYLLPDKSKKSKQKTPVVKKS 74 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC------------------------------CCCEEEEEEEcCCCCCcceeCCccCCC
Confidence 46899999999999999887665 8999999983 2346899999999
Q ss_pred CCCeeeeEEEEeecCC----CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 101 ENPFWDEHFCVPVAHS----VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~----~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
.||.|||+|.|.+... ...+.|+|||++.++ +++||++.+++.++..-...+.|+++
T Consensus 75 ~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 75 VNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred CCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 9999999999986432 246899999999988 99999999999998643344555544
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-13 Score=126.11 Aligned_cols=116 Identities=27% Similarity=0.404 Sum_probs=92.0
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDE 107 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE 107 (852)
.|.|+|.+|+ |...+.++. +||||+|++++...+||+++.++.||.|||
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~------------------------------~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne 51 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFK------------------------------PDPYVEVTVDGQPPKKTEVSKKTSNPKWNE 51 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCC------------------------------CCeEEEEEECCcccEEeeeeCCCCCCcccc
Confidence 5899999998 544444554 899999999877569999999999999999
Q ss_pred EEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCc-----eeeeeeeccCCCCCCCCCCEEEEEE
Q 045478 108 HFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNE-----VDDWFPIAGSYGKNLKPFPQLHVSM 175 (852)
Q Consensus 108 ~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~-----~~~w~~L~~~~g~~~k~~g~l~l~l 175 (852)
+|.|.+. ....+.|+|+|++..+ +++||++.+++.++..... ...|+++..+.....+..|+|.+.+
T Consensus 52 ~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 52 HFTVLVT-PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEeC-CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999985 4568999999999987 8999999999999885322 3468998644311235678887764
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-13 Score=130.36 Aligned_cols=108 Identities=19% Similarity=0.323 Sum_probs=86.9
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--e--eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--A--TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~--~~~rT~vi~~s~ 101 (852)
.|+|.|+|++|++|++++.... .||||+|++-. . ...||++++++.
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~------------------------------~dpYVKV~L~~~~k~~~KkKT~v~k~t~ 62 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLT------------------------------LSFFVKVGMFSTGGLLYKKKTRLVKSSN 62 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCC------------------------------CCcEEEEEEEECCCcceeecCccEECCC
Confidence 5889999999999998643222 79999999842 2 347999999985
Q ss_pred -CCeeeeEEEEeecCCCce--EEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 -NPFWDEHFCVPVAHSVVN--LEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 -nP~WnE~f~~~~~~~~~~--l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.++..... +.++|+|.+..+ +++||++.++.... .+...++|..++...+++
T Consensus 63 ~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~ 128 (135)
T cd08692 63 GQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKV 128 (135)
T ss_pred CCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCe
Confidence 699999999999875444 478888888877 99999999999763 455689999998877765
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-13 Score=126.99 Aligned_cols=89 Identities=29% Similarity=0.394 Sum_probs=77.4
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
-|+|.|+|++|++|+. +.++. +||||+|.+++. ++||+++.++.||+|
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~------------------------------~DPYVkV~~~~~-~~kT~vi~~t~nPvW 74 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTS------------------------------TDGYVKVFFGGQ-EKRTEVIWNNNNPRW 74 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCC------------------------------CCeEEEEEECCc-cccCceecCCCCCcC
Confidence 4899999999999984 55554 899999999877 589999999999999
Q ss_pred eeEEEEeecC--CCceEEEEEEecCCCC-CceeeeEeeeceecc
Q 045478 106 DEHFCVPVAH--SVVNLEFHVKDNDILG-AELIGVVQIPVEKIL 146 (852)
Q Consensus 106 nE~f~~~~~~--~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~ 146 (852)
||+|.|.... ....+.|+|||.+.++ +++||++.+++....
T Consensus 75 NE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 75 NATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 9999997433 4678899999999987 999999999998665
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-13 Score=131.98 Aligned_cols=107 Identities=32% Similarity=0.461 Sum_probs=92.3
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|++.+..+. +||||++.+... ...+|+++.++.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~~T~~~~~~~ 62 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGL------------------------------SDPYVKVSLLQGGKKLKKKKTSVKKGTL 62 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCC------------------------------CCcEEEEEEEcCCeEeeeecCcceecCC
Confidence 3789999999999998876555 899999998542 357999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+... ...+.|+|+|.+..+ +++||.+.+++.+ .|...+.|++|++..+++
T Consensus 63 ~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~ 127 (134)
T cd00276 63 NPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKP 127 (134)
T ss_pred CCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCc
Confidence 999999999998764 367899999998866 8999999999998 678889999998877654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.46 E-value=9e-13 Score=125.18 Aligned_cols=116 Identities=27% Similarity=0.464 Sum_probs=95.0
Q ss_pred EEEEEEEEecCCCCCC--CcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC-----eeEEEeeeecCC
Q 045478 28 DLDLSILEAKSLPNMD--LITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG-----ATVAQTRVISNC 100 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~-----~~~~rT~vi~~s 100 (852)
.|+|+|++|++|++++ ..+. .||||++++.+ ....||+++.++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~~kT~~~~~~ 52 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSI------------------------------VDPYVEVEIHGLPADDSAKFKTKVVKNN 52 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCc------------------------------cCCEEEEEEEeCCCCCCCcEeeeeecCC
Confidence 5899999999999877 3343 89999999942 234899998877
Q ss_pred C-CCeeeeEEEEeecCCC-ceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 101 E-NPFWDEHFCVPVAHSV-VNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 101 ~-nP~WnE~f~~~~~~~~-~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
. ||.|||+|.|.+..+. ..+.|+|+|.+..++++||.+.+++.++..|. .|++|.+..|.+ ...|.|.+.+++
T Consensus 53 ~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 53 GFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCC-CcceeEEEEEEE
Confidence 6 9999999999987654 55799999988778899999999999997653 689998877764 456888888775
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-13 Score=127.38 Aligned_cols=101 Identities=23% Similarity=0.384 Sum_probs=86.7
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCENP 103 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~nP 103 (852)
.+.|.|+|++|++|++++..+. +||||++.+.. ....||+++.+ .||
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~------------------------------~d~yVk~~llp~~~~~~kTkv~~~-~nP 63 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGA------------------------------SSWQVHLVLLPSKKQRAKTKVQRG-PNP 63 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCC------------------------------CCcEEEEEEccCCcceeecccccC-CCC
Confidence 3679999999999998886554 89999988732 34579999888 999
Q ss_pred eeeeEEEEe-ecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 104 FWDEHFCVP-VAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 104 ~WnE~f~~~-~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
+|||+|.|+ +.. ....+.|+|+|++.++ +++||++.|++.++..+.....|++|
T Consensus 64 ~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 64 VFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred cccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 999999998 544 3466899999999888 99999999999999988889999998
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-13 Score=131.80 Aligned_cols=108 Identities=21% Similarity=0.345 Sum_probs=91.6
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--e--eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--A--TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~--~~~rT~vi~~s~ 101 (852)
.+.|.|+|++|++|+.++ .+. +||||+|.+.. . ...||+++.++.
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~------------------------------~d~yVkv~l~~~~~~~~~~kT~v~~~~~ 62 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAH------------------------------TSVYVKVSLMIHNKVVKTKKTEVVDGAA 62 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCC------------------------------CCeEEEEEEEECCEEeeeeecccEeCCC
Confidence 478999999999999887 554 89999999853 2 246999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+... ...+.|+|++.+..+ +++||++.|+......|+..++|..|+...+++
T Consensus 63 nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~ 129 (137)
T cd08409 63 SPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKEL 129 (137)
T ss_pred CCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCc
Confidence 999999999998642 356899999998777 899999999987777888899999998766654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-13 Score=128.58 Aligned_cols=106 Identities=27% Similarity=0.419 Sum_probs=90.9
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s 100 (852)
-.|.|.|+|++|++|+..+..+. +||||+|.+.+ ...+||+++.++
T Consensus 11 ~~~~l~v~i~~a~nL~~~~~~~~------------------------------~dpyv~v~~~~~~~~~~~~rT~v~~~~ 60 (131)
T cd04026 11 KDNKLTVEVREAKNLIPMDPNGL------------------------------SDPYVKLKLIPDPKNETKQKTKTIKKT 60 (131)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCC------------------------------CCCcEEEEEEcCCCCCceecceeecCC
Confidence 45899999999999998776554 89999999963 356899999999
Q ss_pred CCCeeeeEEEEeecCC--CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCC
Q 045478 101 ENPFWDEHFCVPVAHS--VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSY 161 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~--~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~ 161 (852)
.+|.|||+|.|++... ...+.|+|+|.+..+ +++||.+.+++.++... ..+.||+|.+++
T Consensus 61 ~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 61 LNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred CCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 9999999999998754 456899999998876 89999999999999854 688999997654
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-13 Score=129.92 Aligned_cols=108 Identities=26% Similarity=0.449 Sum_probs=87.8
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC-Ce---eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS-GA---TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~-~~---~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|+.++..+. +||||+|.+. +. ...+|++++++.
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~------------------------------~DPyV~v~l~~~~~~~~~~kT~v~~~t~ 62 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQG------------------------------SDPFVKIQLVHGLKLIKTKKTSCMRGTI 62 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCC------------------------------CCeEEEEEEEcCCcccceEcCccccCCC
Confidence 4889999999999999887766 8999999973 22 347999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+... ...+.|+|+|.+..+ +++||++.|...... +...++|+.|+.+.+++
T Consensus 63 nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~~ 128 (135)
T cd08410 63 DPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRTA 128 (135)
T ss_pred CCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCCE
Confidence 999999999998542 235799999999877 999999987653222 33568999999887765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >PHA03003 palmytilated EEV membrane glycoprotein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.9e-13 Score=147.23 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=99.5
Q ss_pred hHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhh-hcCCeEEEEEeCCCcccccccccccc
Q 045478 241 CWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKS-QEGVRVLLLIWDDKTSHDNLFIKTEG 319 (852)
Q Consensus 241 ~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a-~~GV~VriLvwD~~~s~~~~~~~~~~ 319 (852)
..++++++|.+||++|+|+++.|.|.. +++. ....+..|.++|.+|| +|||+||||+ +..+.....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~---~~d~---~~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~~------ 283 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVI---REDD---KTTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDVY------ 283 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEE---eeCC---CCccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCch------
Confidence 468899999999999999999776632 1110 0012358999999885 9999999997 775432100
Q ss_pred cccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCC
Q 045478 320 VMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTP 399 (852)
Q Consensus 320 ~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~ 399 (852)
.....+.|...|+++.+..+ + ..+.+|+|++|||++ +||+||.|+....+..
T Consensus 284 -----~~~~~~~L~~~G~~~~i~vr-------i-------~~~~~H~K~~VVD~~--------~a~iGS~N~d~~s~~~- 335 (369)
T PHA03003 284 -----SMASVKSLQALCVGNDLSVK-------V-------FRIPNNTKLLIVDDE--------FAHITSANFDGTHYLH- 335 (369)
T ss_pred -----hhhHHHHHHHcCCCCCceEe-------e-------ecCCCCceEEEEcCC--------EEEEeccccCchhhcc-
Confidence 12445667777754210000 0 011379999999998 9999999998844321
Q ss_pred CcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhh
Q 045478 400 EHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRS 457 (852)
Q Consensus 400 ~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~ 457 (852)
..|.++ ..++|++|.+++..|.++|+..
T Consensus 336 -----------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 -----------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred -----------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 122232 2467999999999999999863
|
|
| >PRK12452 cardiolipin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.5e-13 Score=152.89 Aligned_cols=139 Identities=18% Similarity=0.116 Sum_probs=106.7
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
+..++.++++|.+||++|+|++..|.|+ ..+.++|+.||+|||+||||+ +..+.....
T Consensus 343 ~~i~~~~l~~I~~A~~~I~I~tpYf~pd----------------~~l~~aL~~Aa~rGV~Vrii~-p~~~D~~~~----- 400 (509)
T PRK12452 343 KSIRNTLLAVMGSAKKSIWIATPYFIPD----------------QETLTLLRLSAISGIDVRILY-PGKSDSIIS----- 400 (509)
T ss_pred HHHHHHHHHHHHHhhhEEEEECCccCCC----------------HHHHHHHHHHHHcCCEEEEEc-CCCCChHHH-----
Confidence 5789999999999999999998544331 589999999999999999998 654221100
Q ss_pred ccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCC
Q 045478 319 GVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDT 398 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt 398 (852)
........+.|.++||+++.+.. ...|+|++|||++ +|++||.|++. |.-.
T Consensus 401 ---~~a~~~~~~~L~~aGv~I~~y~~-----------------~~lHaK~~ivD~~--------~a~vGS~Nld~-RS~~ 451 (509)
T PRK12452 401 ---DQASQSYFTPLLKAGASIYSYKD-----------------GFMHAKIVLVDDK--------IATIGTANMDV-RSFE 451 (509)
T ss_pred ---HHHHHHHHHHHHHcCCEEEEecC-----------------CCeeeeEEEECCC--------EEEEeCcccCH-hHhh
Confidence 00123445677789999986531 1479999999998 99999999988 4311
Q ss_pred CCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhh
Q 045478 399 PEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRST 458 (852)
Q Consensus 399 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~ 458 (852)
..|.+..+..+++.|.++.+.|.++|..+.
T Consensus 452 ------------------------------~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~ 481 (509)
T PRK12452 452 ------------------------------LNYEIISVLYESETVHDIKRDFEDDFKHST 481 (509)
T ss_pred ------------------------------hhhhccEEEECHHHHHHHHHHHHHHHHhCe
Confidence 245577888888999999999999998643
|
|
| >PRK13912 nuclease NucT; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-12 Score=127.65 Aligned_cols=141 Identities=16% Similarity=0.259 Sum_probs=98.6
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
.++++.++++|++|+++|+|+.|.+.. ..|.++|.+|++|||+|+||+ |..++...
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~Y~~~~-----------------~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------ 87 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAIYSFTH-----------------KDIAKALKSAAKRGVKISIIY-DYESNHNN------ 87 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEEEEEch-----------------HHHHHHHHHHHHCCCEEEEEE-eCccccCc------
Confidence 467889999999999999999886532 489999999999999999997 87643211
Q ss_pred ccccCCcHHHHhhhc-CCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccC
Q 045478 319 GVMQTHDEETRKFFK-HSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYD 397 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~-~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~D 397 (852)
......++. ..++++.......... ......+|.|++|||++ ++++||.|++...+.
T Consensus 88 ------~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~ 145 (177)
T PRK13912 88 ------DQSTIGYLDKYPNIKVCLLKGLKAKN--------GKYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFE 145 (177)
T ss_pred ------chhHHHHHHhCCCceEEEecCccccC--------cccccccceeEEEEcCC--------EEEEeCCCCChhHhc
Confidence 111222222 3466665432111000 01124689999999998 999999999984332
Q ss_pred CCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh-HHHHHHHHHHHHHhhh
Q 045478 398 TPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP-AAYDILINFEQRWRRS 457 (852)
Q Consensus 398 t~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~ 457 (852)
. -+++.+.++.| .+.++.+.|.+.|...
T Consensus 146 ~--------------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 146 N--------------------------------NYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred c--------------------------------CCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 1 12567778888 5688999999999864
|
|
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-12 Score=121.76 Aligned_cols=115 Identities=23% Similarity=0.381 Sum_probs=90.3
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe------------eEEEee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA------------TVAQTR 95 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~------------~~~rT~ 95 (852)
...|++++|++|+ ++.+++ +||||++++... ...||+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~------------------------------~DPyvki~~~~~~~~~~~~~~~~~~~~kT~ 50 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFN------------------------------PDPYVKISIQPGKRHIFPALPHHGQECRTS 50 (137)
T ss_pred EEEEEEEEeCCCC-CccCCC------------------------------CCceEEEEEECCCcccccccccccceeeee
Confidence 3578999999998 777776 999999999531 258999
Q ss_pred eecCCCCCee-eeEEEEeecCCCceEEEEEEecCCCC----CceeeeEeeeceeccCCC---ceeeeeeeccCCCCCCCC
Q 045478 96 VISNCENPFW-DEHFCVPVAHSVVNLEFHVKDNDILG----AELIGVVQIPVEKILCGN---EVDDWFPIAGSYGKNLKP 167 (852)
Q Consensus 96 vi~~s~nP~W-nE~f~~~~~~~~~~l~~~V~d~d~~~----~~~iG~~~i~l~~l~~g~---~~~~w~~L~~~~g~~~k~ 167 (852)
++.++.||.| ||+|.|.+.. ...+.|+|+|.+..+ +++||++.||+.++..+. ....|++|. +.+-....
T Consensus 51 v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~-k~~~~s~v 128 (137)
T cd08691 51 IVENTINPVWHREQFVFVGLP-TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLG-RRTPTDHV 128 (137)
T ss_pred eEcCCCCCceEceEEEEEcCC-CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECC-cCCCCCcE
Confidence 9999999999 9999999853 457899999976432 689999999999998653 356799984 44433455
Q ss_pred CCEEEEEE
Q 045478 168 FPQLHVSM 175 (852)
Q Consensus 168 ~g~l~l~l 175 (852)
.|+|.+.+
T Consensus 129 ~G~~~l~~ 136 (137)
T cd08691 129 SGQLTFRF 136 (137)
T ss_pred EEEEEEEe
Confidence 67777654
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=125.52 Aligned_cols=91 Identities=32% Similarity=0.440 Sum_probs=80.0
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC------eeEEEeeeecCC
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG------ATVAQTRVISNC 100 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~------~~~~rT~vi~~s 100 (852)
+.|.|+|++|++|+.++.++. +||||+|++.+ ....||+++.++
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~------------------------------~dPyv~v~l~~~~~~~~~~~~kT~v~~~t 65 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGS------------------------------SDPFVKVELLPRHLFPDVPTPKTQVKKKT 65 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCC------------------------------CCCEEEEEEECCCcCccccccccccCcCC
Confidence 679999999999998887665 89999999863 346899999999
Q ss_pred CCCeeeeEEEEeecCC-----CceEEEEEEecCCCC-CceeeeEeeeceeccC
Q 045478 101 ENPFWDEHFCVPVAHS-----VVNLEFHVKDNDILG-AELIGVVQIPVEKILC 147 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~-----~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~ 147 (852)
.||+|||+|.|++... ...+.|+|||.+..+ +++||++.+++.++..
T Consensus 66 ~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 66 LFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred CCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 9999999999998752 457899999999988 9999999999999884
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-12 Score=116.71 Aligned_cols=104 Identities=18% Similarity=0.345 Sum_probs=78.4
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCCCCe
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCENPF 104 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~nP~ 104 (852)
|.|+|++|++|+. . +||||++.++. ...+||+++.++.||+
T Consensus 1 L~V~V~~A~~L~~-----~------------------------------sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPv 45 (118)
T cd08686 1 LNVIVHSAQGFKQ-----S------------------------------ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPN 45 (118)
T ss_pred CEEEEEeCCCCCC-----C------------------------------CCCEEEEEEcCccccceeeeeeeecCCCCCc
Confidence 6899999999962 2 89999999864 3569999999999999
Q ss_pred eeeEEEEeecCCCceEEEEEEec-------CCCC-CceeeeEeeecee--ccCCCceeeeeeeccCCCCCCCCCCEEEEE
Q 045478 105 WDEHFCVPVAHSVVNLEFHVKDN-------DILG-AELIGVVQIPVEK--ILCGNEVDDWFPIAGSYGKNLKPFPQLHVS 174 (852)
Q Consensus 105 WnE~f~~~~~~~~~~l~~~V~d~-------d~~~-~~~iG~~~i~l~~--l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~ 174 (852)
|||+|.|++. ....+.+.|+|. |..+ +++||++.|.++. +........-+.| + +-+|.++
T Consensus 46 WnE~F~i~l~-~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~----~-----~~~~~~s 115 (118)
T cd08686 46 WNEEFEIELE-GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISM----N-----GITVNLS 115 (118)
T ss_pred cceEEEEEeC-CCCEEEEEEEEcccccccccccCcccEEEEEEEEECHHHhccCCeeEEEEEe----c-----CEEEEEE
Confidence 9999999997 466889999997 3445 8999988887743 3222223333444 1 1367777
Q ss_pred EEe
Q 045478 175 MQY 177 (852)
Q Consensus 175 l~f 177 (852)
|+|
T Consensus 116 ~~~ 118 (118)
T cd08686 116 IKF 118 (118)
T ss_pred EeC
Confidence 776
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.6e-13 Score=126.64 Aligned_cols=108 Identities=22% Similarity=0.395 Sum_probs=88.6
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC---e--eEEEeeeecCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG---A--TVAQTRVISNC 100 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~---~--~~~rT~vi~~s 100 (852)
.|+|.|+|++|++|+.++..+. +||||+|.+.. . ...||+++.++
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~------------------------------~dpyVkv~llp~~~~~~~~~kT~v~~~t 63 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKA------------------------------PDTYVKLTLLNSDGQEISKSKTSIRRGQ 63 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC------------------------------CCeeEEEEEEeCCCcceeeccceeecCC
Confidence 5889999999999998877665 89999999842 2 23699999999
Q ss_pred CCCeeeeEEEEeecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 101 ENPFWDEHFCVPVAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
.||+|||+|.|++.. ....+.|+|+|.+.++ +++||++.|++.... .+..++|+.++...+++
T Consensus 64 ~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~~ 130 (138)
T cd08408 64 PDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQQ 130 (138)
T ss_pred CCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCCE
Confidence 999999999999875 3357899999998877 999999999886432 23467899998776654
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.2e-13 Score=167.72 Aligned_cols=119 Identities=19% Similarity=0.383 Sum_probs=102.2
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCe
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPF 104 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~ 104 (852)
+.|.|.|+|++|++|. +.++. +||||++.+++....||++++++.||+
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~------------------------------sdPyv~l~~g~~~~~kTkvvk~~~nP~ 2025 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGN------------------------------TNAFCKLTLGNGPPRQTKVVSHSSSPE 2025 (2102)
T ss_pred CCcceEEEEeeccccc--cccCC------------------------------CCCeEEEEECCCCcccccccCCCCCCC
Confidence 4799999999999998 33444 899999999976446999999999999
Q ss_pred eeeEEEEeecCCC--ceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCE---EEEEEEeee
Q 045478 105 WDEHFCVPVAHSV--VNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQ---LHVSMQYKP 179 (852)
Q Consensus 105 WnE~f~~~~~~~~--~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~---l~l~l~f~~ 179 (852)
|||.|+|.+..+. ..++|+|||+|.++++.||.+.|++.++..++...+||+|.+ +| ++.|+ |++.++|.+
T Consensus 2026 Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~-~~---~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2026 WKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNP-ES---NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCc-cc---ccCCCcceEEEEEEecC
Confidence 9999998887765 568999999999998899999999999999999999999953 33 23455 999999875
|
|
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-12 Score=121.30 Aligned_cols=97 Identities=25% Similarity=0.404 Sum_probs=83.5
Q ss_pred EEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe------eEEEeeeecCCCCCee
Q 045478 32 SILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA------TVAQTRVISNCENPFW 105 (852)
Q Consensus 32 ~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~------~~~rT~vi~~s~nP~W 105 (852)
-.++|++|++++.++. +||||+|.+.+. .++||+++.++.||+|
T Consensus 5 ~~i~a~~L~~~d~~g~------------------------------~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~w 54 (120)
T cd04048 5 LSISCRNLLDKDVLSK------------------------------SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDF 54 (120)
T ss_pred EEEEccCCCCCCCCCC------------------------------CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCc
Confidence 4588999999988776 899999999654 3689999999999999
Q ss_pred eeEEEEeecC-CCceEEEEEEecCC----CC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 106 DEHFCVPVAH-SVVNLEFHVKDNDI----LG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 106 nE~f~~~~~~-~~~~l~~~V~d~d~----~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
||+|.|.+.. ....+.|+|+|++. .+ +++||++.+++.++..+.....|++|.
T Consensus 55 ne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 55 VTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred eEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 9999998543 45678999999986 55 899999999999999887788899983
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-12 Score=119.23 Aligned_cols=89 Identities=26% Similarity=0.388 Sum_probs=78.3
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCee-EEEeeeecCCCCCeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGAT-VAQTRVISNCENPFWD 106 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~-~~rT~vi~~s~nP~Wn 106 (852)
.|+|+|++|++|++++..+. +||||+|.+++.. ..||+++.++.||.||
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~------------------------------~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wn 50 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGK------------------------------SDPYLKIKLGKKKINDRDNYIPNTLNPVFG 50 (124)
T ss_pred CEEEEEEECcCCCCCCCCCC------------------------------CCcEEEEEECCeeccceeeEEECCCCCccc
Confidence 37899999999999987766 8999999998764 3689999999999999
Q ss_pred eEEEEeecCC-CceEEEEEEecCCCC-CceeeeEeeeceecc
Q 045478 107 EHFCVPVAHS-VVNLEFHVKDNDILG-AELIGVVQIPVEKIL 146 (852)
Q Consensus 107 E~f~~~~~~~-~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~ 146 (852)
|+|.|.+..+ ...+.|+|+|.+.++ +++||++.+++++..
T Consensus 51 e~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 51 KMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRF 92 (124)
T ss_pred eEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeecccc
Confidence 9999998654 457899999999987 999999999998765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.8e-12 Score=141.53 Aligned_cols=128 Identities=27% Similarity=0.319 Sum_probs=106.7
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe--eEEEeeeecCCC
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA--TVAQTRVISNCE 101 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~--~~~rT~vi~~s~ 101 (852)
.-+..|.|+|++|++|+.++..+. +||||++++... ...+|++.+++.
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g~------------------------------sdpyVK~~llPdk~~k~kT~v~r~tl 213 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGGT------------------------------SDPYVKVYLLPDKKGKFKTRVHRKTL 213 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCCC------------------------------CCCeeEEEEcCCCCCcceeeeeecCc
Confidence 345779999999999999984333 899999999643 457999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
||.|||+|.|.+.+. ...+.|+|+|.|.++ +++||.+.+++..+......+.|.++........+..|+|.++++|
T Consensus 214 nP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y 293 (421)
T KOG1028|consen 214 NPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCY 293 (421)
T ss_pred CCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEe
Confidence 999999999997763 567899999999999 9999999999998887776888999965433333344899999999
Q ss_pred eecC
Q 045478 178 KPIG 181 (852)
Q Consensus 178 ~~~~ 181 (852)
.|..
T Consensus 294 ~p~~ 297 (421)
T KOG1028|consen 294 LPTA 297 (421)
T ss_pred ecCC
Confidence 9984
|
|
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.9e-12 Score=118.88 Aligned_cols=101 Identities=27% Similarity=0.353 Sum_probs=82.9
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~ 101 (852)
.+.|.|+|++|++|++.+..+. +||||++.+.. ..+.||+++.++.
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~------------------------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~ 63 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGL------------------------------SDPYVKLNLLPGASKATKLRTKTVHKTR 63 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------CCceEEEEEecCCCCCCceeeeeecCCC
Confidence 3689999999999998876655 89999999842 2468999999999
Q ss_pred CCeeeeEEEEeecCC----CceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeee
Q 045478 102 NPFWDEHFCVPVAHS----VVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFP 156 (852)
Q Consensus 102 nP~WnE~f~~~~~~~----~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~ 156 (852)
||.|||+|.|..... ...+.|+|+|.+..++++||.+.+++.++..++..+-|+.
T Consensus 64 ~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 64 NPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred CCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 999999999963322 3578999999887788999999999999997765555543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.7e-13 Score=142.15 Aligned_cols=104 Identities=28% Similarity=0.430 Sum_probs=92.2
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCCC
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCEN 102 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~n 102 (852)
..|+|+|.+|+||-+||..+. |||||.+.+-. ....+|++++.++|
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGl------------------------------SDPYvk~kliPD~~~~sKqKTkTik~~LN 229 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGL------------------------------SDPYVKLKLIPDPKNESKQKTKTIKATLN 229 (683)
T ss_pred ceEEEEehhhccccccCCCCC------------------------------CCcceeEEeccCCcchhhhhhhhhhhhcC
Confidence 459999999999999999887 99999999842 34579999999999
Q ss_pred CeeeeEEEEeecCCC--ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCC
Q 045478 103 PFWDEHFCVPVAHSV--VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSY 161 (852)
Q Consensus 103 P~WnE~f~~~~~~~~--~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~ 161 (852)
|+|||+|+|.+.+.. ..+.++|||+|..+ ++|+|...+.+++|+ ..++++||.|+++.
T Consensus 230 P~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsqe 290 (683)
T KOG0696|consen 230 PVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQE 290 (683)
T ss_pred ccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhhh
Confidence 999999999998754 66899999999988 999999999999998 56789999998764
|
|
| >PRK13912 nuclease NucT; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5e-12 Score=127.07 Aligned_cols=127 Identities=20% Similarity=0.233 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchh
Q 045478 545 KSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAA 624 (852)
Q Consensus 545 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~ 624 (852)
..+...++++|++|++.|+|+. |+++ ...+..+|.++. ++||+|+|+++........ .
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~-----------------~~~i~~aL~~Aa--~RGV~VrIlld~~~~~~~~-~- 89 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFT-----------------HKDIAKALKSAA--KRGVKISIIYDYESNHNND-Q- 89 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEc-----------------hHHHHHHHHHHH--HCCCEEEEEEeCccccCcc-h-
Confidence 4567889999999999999996 5552 124666666663 4889999999964321100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEE
Q 045478 625 VQEILYWQGQTMSMMYKIVAQALQD-NGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVH 703 (852)
Q Consensus 625 ~~~~~~~~~~t~~~~~~~i~~~L~~-~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 703 (852)
.+ ...|.+ .+++.. .+..+... . . ....++|
T Consensus 90 ---------~~--------~~~l~~~~~~~~~-------~~~~~~~~--~---~-------------------~~~~~~H 121 (177)
T PRK13912 90 ---------ST--------IGYLDKYPNIKVC-------LLKGLKAK--N---G-------------------KYYGIMH 121 (177)
T ss_pred ---------hH--------HHHHHhCCCceEE-------EecCcccc--C---c-------------------ccccccc
Confidence 00 011111 122210 00000000 0 0 0013789
Q ss_pred eeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCcc
Q 045478 704 AKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHY 743 (852)
Q Consensus 704 SKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~ 743 (852)
+|+||||++++++||+||+.+|+..| .|+.+++.||..
T Consensus 122 ~K~~viD~~~~~iGS~N~t~~s~~~N--~E~~lii~d~~~ 159 (177)
T PRK13912 122 QKVAIIDDKIVVLGSANWSKNAFENN--YEVLLITDDTET 159 (177)
T ss_pred eeEEEEcCCEEEEeCCCCChhHhccC--CceEEEECCHHH
Confidence 99999999999999999999999855 999999988754
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-12 Score=143.33 Aligned_cols=131 Identities=24% Similarity=0.337 Sum_probs=114.1
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
...|.|+|.+|+||+..+..+. +||||+|.+++..+.||.++.+++.|.|
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~------------------------------~D~yC~v~lD~E~v~RT~tv~ksL~PF~ 53 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGM------------------------------RDCYCTVNLDQEEVCRTATVEKSLCPFF 53 (800)
T ss_pred ccceeEEEeecccCCCCCCCCC------------------------------cCcceEEeecchhhhhhhhhhhhcCCcc
Confidence 4568999999999999887766 8999999999999999999999999999
Q ss_pred eeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeeecCCcc
Q 045478 106 DEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIP 184 (852)
Q Consensus 106 nE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~~~~~ 184 (852)
.|.|+|+++.....+.|-|+|.| ++ |+.||++.|.-++|..-...+.||.|. +-.-....+|+|++++++++.....
T Consensus 54 gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~-~VD~dsEVQG~v~l~l~~~e~~~~~ 131 (800)
T KOG2059|consen 54 GEEFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQ-PVDPDSEVQGKVHLELALTEAIQSS 131 (800)
T ss_pred ccceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceecc-ccCCChhhceeEEEEEEeccccCCC
Confidence 99999999998899999999999 66 999999999999998777789999993 3222346789999999999987654
Q ss_pred cccC
Q 045478 185 LYKD 188 (852)
Q Consensus 185 ~~~~ 188 (852)
.-..
T Consensus 132 ~~~c 135 (800)
T KOG2059|consen 132 GLVC 135 (800)
T ss_pred cchh
Confidence 3333
|
|
| >cd00138 PLDc Phospholipase D | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-11 Score=121.42 Aligned_cols=131 Identities=23% Similarity=0.347 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCch
Q 045478 544 DKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSA 623 (852)
Q Consensus 544 e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~ 623 (852)
..++.+.++++|.+|++.|+|+++||.+.. ......+...|.++.+ +|++|+|++...+.... .
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a~~--rGv~V~il~~~~~~~~~--~ 82 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAAAR--RGVKVRILVDEWSNTDL--K 82 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHHHH--CCCEEEEEEcccccCCc--h
Confidence 467899999999999999999999998421 0002356677777754 58999999996543211 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeE
Q 045478 624 AVQEILYWQGQTMSMMYKIVAQALQDN---GLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMI 700 (852)
Q Consensus 624 ~~~~~~~~~~~t~~~~~~~i~~~L~~~---Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 700 (852)
. .. .....|.+. |++ ++.+..... ...
T Consensus 83 -------~-~~-------~~~~~l~~~~~~~i~----------~~~~~~~~~-------------------------~~~ 112 (176)
T cd00138 83 -------I-SS-------AYLDSLRALLDIGVR----------VFLIRTDKT-------------------------YGG 112 (176)
T ss_pred -------H-HH-------HHHHHHHHhhcCceE----------EEEEcCCcc-------------------------ccc
Confidence 0 01 113444443 443 222111100 124
Q ss_pred EEEeeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCc
Q 045478 701 YVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPH 742 (852)
Q Consensus 701 yvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~ 742 (852)
.+|+|+||||++.+++||+||+.+|+. .+.|+++.+.+++
T Consensus 113 ~~H~K~~iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~ 152 (176)
T cd00138 113 VLHTKLVIVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPA 152 (176)
T ss_pred ceeeeEEEEcCCEEEEECCcCChhhhh--hhcceEEEEeChH
Confidence 899999999999999999999999998 4599999998874
|
Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers. |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.7e-11 Score=108.26 Aligned_cols=87 Identities=26% Similarity=0.472 Sum_probs=73.7
Q ss_pred EEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe-----eEEEeeeecCCCCCee
Q 045478 31 LSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA-----TVAQTRVISNCENPFW 105 (852)
Q Consensus 31 v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~-----~~~rT~vi~~s~nP~W 105 (852)
+-+++|++|+.++.++. +||||+|++.+. ..+||+++.++.||.|
T Consensus 4 ~~~i~a~~L~~~d~~~~------------------------------~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~W 53 (110)
T cd04047 4 ELQFSGKKLDKKDFFGK------------------------------SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVW 53 (110)
T ss_pred EEEEEeCCCCCCCCCCC------------------------------CCeeEEEEEECCCCCEEEEEeeeEeccCCCCce
Confidence 34569999999988776 999999998542 4689999999999999
Q ss_pred eeEEEEeecC-----CCceEEEEEEecCCCC-CceeeeEeeeceeccCC
Q 045478 106 DEHFCVPVAH-----SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCG 148 (852)
Q Consensus 106 nE~f~~~~~~-----~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g 148 (852)
| .|.|++.. ....+.|+|+|++..+ +++||++.+++.++..+
T Consensus 54 n-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 54 K-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred E-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcC
Confidence 9 78888643 2567899999999987 89999999999999843
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-11 Score=133.56 Aligned_cols=123 Identities=27% Similarity=0.450 Sum_probs=98.8
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
..+.++|++|++|-..|..|+ |||||++.++..+ .||++|...+||+||
T Consensus 295 akitltvlcaqgl~akdktg~------------------------------sdpyvt~qv~ktk-rrtrti~~~lnpvw~ 343 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGK------------------------------SDPYVTAQVGKTK-RRTRTIHQELNPVWN 343 (1283)
T ss_pred eeeEEeeeecccceecccCCC------------------------------CCCcEEEeecccc-hhhHhhhhccchhhh
Confidence 347899999999999998887 9999999999887 799999999999999
Q ss_pred eEEEEeecCCCceEEEEEEecCCC------------CCceeeeEeeeceeccCCCceeeeeeeccCCCCC-CCCCCEEEE
Q 045478 107 EHFCVPVAHSVVNLEFHVKDNDIL------------GAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN-LKPFPQLHV 173 (852)
Q Consensus 107 E~f~~~~~~~~~~l~~~V~d~d~~------------~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~-~k~~g~l~l 173 (852)
|.|+|.|.++...+.+.|||+|.. +|+|+|+..|.+..+. | +.+-||.|.....+. ..+...|++
T Consensus 344 ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls-g-emdvwynlekrtdksavsgairlhi 421 (1283)
T KOG1011|consen 344 EKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-G-EMDVWYNLEKRTDKSAVSGAIRLHI 421 (1283)
T ss_pred hheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc-c-chhhhcchhhccchhhccceEEEEE
Confidence 999999999999999999997632 4899999999998875 4 478899995443333 222334555
Q ss_pred EEEeeecCC
Q 045478 174 SMQYKPIGQ 182 (852)
Q Consensus 174 ~l~f~~~~~ 182 (852)
++.....++
T Consensus 422 sveikgeek 430 (1283)
T KOG1011|consen 422 SVEIKGEEK 430 (1283)
T ss_pred EEEEcCccc
Confidence 555554443
|
|
| >PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.1e-11 Score=111.29 Aligned_cols=113 Identities=24% Similarity=0.389 Sum_probs=71.3
Q ss_pred HHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchhHHHHHH
Q 045478 551 YVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILY 630 (852)
Q Consensus 551 yl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~~~~~~~ 630 (852)
++++|.+|++.|+|..+||... .+...+..+ ..+|++|+|++...... .....
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~--~~~gv~v~ii~~~~~~~-~~~~~------ 53 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDA--AKRGVKVRIIVDSNQDD-SEAIN------ 53 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHH--HHTT-EEEEEEECGGGH-HCCCS------
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHH--HHCCCeEEEEECCCccc-cchhh------
Confidence 3679999999999999999421 234445444 34779999999852210 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEc
Q 045478 631 WQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVD 710 (852)
Q Consensus 631 ~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD 710 (852)
. .....+.+.+...|++++ .++|+|++|+|
T Consensus 54 --~----~~~~~~~~~~~~~~i~v~--------------------------------------------~~~H~K~~i~d 83 (126)
T PF13091_consen 54 --L----ASLKELRELLKNAGIEVR--------------------------------------------NRLHAKFYIID 83 (126)
T ss_dssp --H----HHHHHHHHHHHHTTHCEE--------------------------------------------S-B--EEEEET
T ss_pred --h----HHHHHHHhhhccceEEEe--------------------------------------------cCCCcceEEec
Confidence 0 001122344467776530 18999999999
Q ss_pred ceeEEecCcCcccCCCCCCCCceeEEEEecCc
Q 045478 711 DEYVIMGSANINQRSLEGSRDTEIAMGAYQPH 742 (852)
Q Consensus 711 D~~~iIGSANln~RSm~~n~DsEi~v~i~d~~ 742 (852)
|+++++||+||+.+||. ++.|+++.+.++.
T Consensus 84 ~~~~iiGS~N~t~~~~~--~n~E~~~~~~~~~ 113 (126)
T PF13091_consen 84 DKVAIIGSANLTSSSFR--RNYELGVIIDDPE 113 (126)
T ss_dssp TTEEEEES--CSCCCSC--TSEEEEEEEECHH
T ss_pred CccEEEcCCCCCcchhc--CCcceEEEEECHH
Confidence 99999999999999997 4599999998874
|
... |
| >PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.9e-10 Score=107.53 Aligned_cols=124 Identities=19% Similarity=0.367 Sum_probs=84.5
Q ss_pred HHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccccccc-C
Q 045478 245 ICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQ-T 323 (852)
Q Consensus 245 l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~-~ 323 (852)
|.++|++|+++|+|+.+.+.+ ..|.++|..++++||+|+|++ +...... +.+. .
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~-----------------~~i~~~l~~~~~~gv~v~ii~-~~~~~~~-------~~~~~~ 55 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITD-----------------PDIIKALLDAAKRGVKVRIIV-DSNQDDS-------EAINLA 55 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-S-----------------CHHHHHHHHHHHTT-EEEEEE-ECGGGHH-------CCCSHH
T ss_pred CHHHHhccCCEEEEEEEecCc-----------------HHHHHHHHHHHHCCCeEEEEE-CCCcccc-------chhhhH
Confidence 578999999999999887621 488999999999999999998 5421100 0000 0
Q ss_pred CcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCC
Q 045478 324 HDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRL 403 (852)
Q Consensus 324 ~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~ 403 (852)
......+.+...|+++. .+.|.|++|||++ ++++|+.|++...|
T Consensus 56 ~~~~~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~--------~~iiGS~N~t~~~~------- 99 (126)
T PF13091_consen 56 SLKELRELLKNAGIEVR---------------------NRLHAKFYIIDDK--------VAIIGSANLTSSSF------- 99 (126)
T ss_dssp HHHHHHHHHHHTTHCEE---------------------S-B--EEEEETTT--------EEEEES--CSCCCS-------
T ss_pred HHHHHHhhhccceEEEe---------------------cCCCcceEEecCc--------cEEEcCCCCCcchh-------
Confidence 01233444466777765 1569999999998 99999999998544
Q ss_pred CCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChH-HHHHHHHHHHHH
Q 045478 404 FGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPA-AYDILINFEQRW 454 (852)
Q Consensus 404 ~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpa-a~dl~~~F~~rW 454 (852)
...++..+.+++|. +..+.+.|.+.|
T Consensus 100 -------------------------~~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 100 -------------------------RRNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp -------------------------CTSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred -------------------------cCCcceEEEEECHHHHHHHHHHHhccC
Confidence 13458999999995 899999999989
|
... |
| >PRK01642 cls cardiolipin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-10 Score=132.05 Aligned_cols=138 Identities=18% Similarity=0.128 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
+.+.+.+.++|.+||++|+|++..|-| ...+.++|+.||+|||+|+||+ +........
T Consensus 317 ~~~~~~~~~~I~~A~~~I~I~tpYfip----------------~~~i~~aL~~Aa~rGV~Vril~-p~~~d~~~~----- 374 (483)
T PRK01642 317 ETIHQFLLTAIYSARERLWITTPYFVP----------------DEDLLAALKTAALRGVDVRIII-PSKNDSLLV----- 374 (483)
T ss_pred hHHHHHHHHHHHHhccEEEEEcCCcCC----------------CHHHHHHHHHHHHcCCEEEEEe-CCCCCcHHH-----
Confidence 567788999999999999998743322 1589999999999999999998 654221110
Q ss_pred ccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCC
Q 045478 319 GVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDT 398 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt 398 (852)
........+.|.+.||+++.+.. ...|.|++|||++ ++++|+.|++...+.
T Consensus 375 ---~~~~~~~~~~L~~~Gv~I~~y~~-----------------~~~HaK~~ivD~~--------~~~vGS~N~d~rS~~- 425 (483)
T PRK01642 375 ---FWASRAFFTELLEAGVKIYRYEG-----------------GLLHTKSVLVDDE--------LALVGTVNLDMRSFW- 425 (483)
T ss_pred ---HHHHHHHHHHHHHcCCEEEEeCC-----------------CceEeEEEEECCC--------EEEeeCCcCCHhHHh-
Confidence 00123345567788999985421 1469999999998 999999999772221
Q ss_pred CCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh-HHHHHHHHHHHHHhhhh
Q 045478 399 PEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP-AAYDILINFEQRWRRST 458 (852)
Q Consensus 399 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~~ 458 (852)
--+++.+.+.+| .+.++.+.|.++|..+.
T Consensus 426 -------------------------------~N~E~~~~i~d~~~~~~l~~~f~~d~~~s~ 455 (483)
T PRK01642 426 -------------------------------LNFEITLVIDDTGFAADLAAMQEDYFARSR 455 (483)
T ss_pred -------------------------------hhhcceEEEECHHHHHHHHHHHHHHHHhCe
Confidence 113678889998 58899999999997643
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-10 Score=101.39 Aligned_cols=81 Identities=40% Similarity=0.688 Sum_probs=70.4
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe--eEEEeeeecCCCCCeee
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA--TVAQTRVISNCENPFWD 106 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~--~~~rT~vi~~s~nP~Wn 106 (852)
|+|+|++|++|+..+..+. .+|||++.+.+. ...+|+++.++.+|.|+
T Consensus 1 L~v~I~~a~~L~~~~~~~~------------------------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~ 50 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK------------------------------PDPYVRVSVNGSESTKYKTKVKKNTSNPVWN 50 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS------------------------------BEEEEEEEEETTTCEEEEECCBSSBSSEEEE
T ss_pred CEEEEEEEECCCCcccCCc------------------------------ccccceeecceeeeeeeeeeeeeccccceee
Confidence 7899999999998775554 899999999874 34999999999999999
Q ss_pred eEEEEeecC-CCceEEEEEEecCCCC-CceeeeEe
Q 045478 107 EHFCVPVAH-SVVNLEFHVKDNDILG-AELIGVVQ 139 (852)
Q Consensus 107 E~f~~~~~~-~~~~l~~~V~d~d~~~-~~~iG~~~ 139 (852)
|+|.|++.. ....+.|+|+|.+..+ +++||+++
T Consensus 51 e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 51 EEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 999999554 4566999999999998 99999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-09 Score=98.23 Aligned_cols=93 Identities=38% Similarity=0.684 Sum_probs=80.2
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe--eEEEeeeecCCCCCee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA--TVAQTRVISNCENPFW 105 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~--~~~rT~vi~~s~nP~W 105 (852)
+|.|.|++|++|........ .+|||++.+... ..++|+++.++.||.|
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~------------------------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w 50 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGK------------------------------SDPYVKVSLDGDPKEKKKTKVVKNTLNPVW 50 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCC------------------------------CCceEEEEEeCCccceEeeeEecCCCCCcc
Confidence 37899999999986554333 799999999876 5699999999999999
Q ss_pred eeEEEEeecCC-CceEEEEEEecCCCC-CceeeeEeeeceeccCCCc
Q 045478 106 DEHFCVPVAHS-VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNE 150 (852)
Q Consensus 106 nE~f~~~~~~~-~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~ 150 (852)
||.|.|++... ...+.|+|+|.+..+ +.++|.+.+++.++..+..
T Consensus 51 ~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 51 NETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred cceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 99999999887 788899999998877 8999999999999886654
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.6e-10 Score=97.86 Aligned_cols=99 Identities=37% Similarity=0.721 Sum_probs=84.2
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|.|.|++|++|........ .+|||++.+.+...++|+++.++.||.|+|.
T Consensus 1 l~v~i~~~~~l~~~~~~~~------------------------------~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~ 50 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGK------------------------------SDPYVKVSLGGKQKFKTKVVKNTLNPVWNET 50 (102)
T ss_pred CEEEEEeeeCCCCcCCCCC------------------------------CCcEEEEEeccCceEecceeCCCCCCcccce
Confidence 5789999999986543332 8999999999855589999999999999999
Q ss_pred EEEeecC-CCceEEEEEEecCCCC-CceeeeEeeeceecc-CCCceeeeeee
Q 045478 109 FCVPVAH-SVVNLEFHVKDNDILG-AELIGVVQIPVEKIL-CGNEVDDWFPI 157 (852)
Q Consensus 109 f~~~~~~-~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~-~g~~~~~w~~L 157 (852)
|.|++.. ....+.|+|++.+..+ ..+||.+.+++.++. .+.....|++|
T Consensus 51 ~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 51 FEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 9999987 6678899999998877 899999999999998 66666778764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PRK11263 cardiolipin synthase 2; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-09 Score=120.84 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=99.3
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
..+...+.++|.+|+++|+|+.-.|.| +..|.++|+.||+|||+|+||+ +..+....
T Consensus 205 ~~i~~~~~~~i~~A~~~I~I~tpYf~p----------------~~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~~------ 261 (411)
T PRK11263 205 DDIERHYLKALRQARREVIIANAYFFP----------------GYRLLRALRNAARRGVRVRLIL-QGEPDMPI------ 261 (411)
T ss_pred HHHHHHHHHHHHHhceEEEEEecCcCC----------------CHHHHHHHHHHHHCCCEEEEEe-CCCCCcHH------
Confidence 456778899999999999998632322 1589999999999999999998 65432211
Q ss_pred ccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCC
Q 045478 319 GVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDT 398 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt 398 (852)
+....+.....|.++||+++.+.. ...|.|++|||++ +++||+.|++. |...
T Consensus 262 --~~~a~~~~~~~Ll~~Gv~I~~y~~-----------------~~lHaK~~viD~~--------~~~vGS~Nld~-rS~~ 313 (411)
T PRK11263 262 --VRVGARLLYNYLLKGGVQIYEYCR-----------------RPLHGKVALMDDH--------WATVGSSNLDP-LSLS 313 (411)
T ss_pred --HHHHHHHHHHHHHHCCCEEEEecC-----------------CCceeEEEEECCC--------EEEEeCCcCCH-HHhh
Confidence 000123456677889999875421 1469999999998 99999999987 5321
Q ss_pred CCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChH-HHHHHHHHHHHHh
Q 045478 399 PEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPA-AYDILINFEQRWR 455 (852)
Q Consensus 399 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpa-a~dl~~~F~~rW~ 455 (852)
--.++.+.|.+|. +..+.+.|.+.+.
T Consensus 314 -------------------------------lN~E~~~~i~d~~~a~~l~~~~~~~~~ 340 (411)
T PRK11263 314 -------------------------------LNLEANLIIRDRAFNQTLRDNLNGLIA 340 (411)
T ss_pred -------------------------------hhhhcCEEEeCHHHHHHHHHHHHHHHH
Confidence 1125678888885 6888899999986
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.1e-09 Score=118.26 Aligned_cols=124 Identities=20% Similarity=0.355 Sum_probs=94.3
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~vi~~s 100 (852)
...+|.|+|+++++++. +. .++.+ ..+ ..||||+|.+.+. ...+|++..|+
T Consensus 407 ~~~~L~V~Visgq~~~~-~~-~k~~~----------------------~~s-~~DpyV~VeI~Gvp~D~~~~kT~v~nNg 461 (537)
T PLN02223 407 VVKILKVKIYMGDGWIV-DF-KKRIG----------------------RLS-KPDLYVRISIAGVPHDEKIMKTTVKNNE 461 (537)
T ss_pred cceEEEEEEEEcccccC-Cc-ccccC----------------------CCC-CCCeEEEEEEeeccCCcceeEEEeCCCC
Confidence 36789999999999861 11 00000 000 1799999998652 34688888889
Q ss_pred CCCeeeeEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 101 ENPFWDEHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
.||.|||+|.|++..+. .-+.|+|+|+|..+ +++||+..+|+..|..|. ++.+|.+..|.+++. .+|-++++|
T Consensus 462 ~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~-~~Ll~~f~~ 536 (537)
T PLN02223 462 WKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSS-TMLLTRFKW 536 (537)
T ss_pred cCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCC-ceEEEEEEe
Confidence 99999999999987665 45699999999876 899999999999999886 678999999987643 566665554
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.8e-09 Score=126.14 Aligned_cols=134 Identities=20% Similarity=0.321 Sum_probs=105.2
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCe
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPF 104 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~ 104 (852)
.=|+|.|+|.+|++|...+.+-. .+.|||+++...+...+||++.+++.||+
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~----------------------------~~vDpyit~~~~~r~~gkT~v~~nt~nPv 485 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTIN----------------------------GTVDPYITVTFSDRVIGKTRVKKNTLNPV 485 (1227)
T ss_pred eeEEEEEEEeeccCccccccccc----------------------------CCCCceEEEEeccccCCccceeeccCCcc
Confidence 35899999999999987663211 12899999999888889999999999999
Q ss_pred eeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceee-eeeeccCCCCCCCCCCEEEEEEEeeecCC
Q 045478 105 WDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDD-WFPIAGSYGKNLKPFPQLHVSMQYKPIGQ 182 (852)
Q Consensus 105 WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~-w~~L~~~~g~~~k~~g~l~l~l~f~~~~~ 182 (852)
|||+|.+.+..-...+.++|+|.+... |.++|+++++|..|.......+ -+.++ ... +.-|+|...++|+|+..
T Consensus 486 wNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~---k~vGrL~yDl~ffp~~e 561 (1227)
T COG5038 486 WNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNT---KNVGRLTYDLRFFPVIE 561 (1227)
T ss_pred ccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccC---ccceEEEEeeeeecccC
Confidence 999999999888889999999966555 9999999999988875443333 33332 222 56799999999999976
Q ss_pred cccccCCC
Q 045478 183 IPLYKDGV 190 (852)
Q Consensus 183 ~~~~~~gv 190 (852)
+..-..|.
T Consensus 562 ~k~~~~~s 569 (1227)
T COG5038 562 DKKELKGS 569 (1227)
T ss_pred Cccccccc
Confidence 54433333
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-09 Score=120.63 Aligned_cols=108 Identities=33% Similarity=0.514 Sum_probs=90.2
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~ 101 (852)
+|.|+|.|++|++|+.++..+. +||||++.+-. ....||.+.+++.
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~------------------------------~d~~Vk~~l~~~~~~~~kkkT~~~~~~~ 346 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGL------------------------------SDPYVKVTLLDGDKRLSKKKTSVKKKTL 346 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCC------------------------------CCccEEEEEecCCceeeeeeeecccCCC
Confidence 5999999999999999987766 89999999842 2457999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNL 165 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~ 165 (852)
||+|||+|.|.+... ...+.++|+|.+.++ +++||.+.+.... .|....+|..++...+++.
T Consensus 347 npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv 412 (421)
T KOG1028|consen 347 NPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPV 412 (421)
T ss_pred CCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCce
Confidence 999999999987742 345799999999999 8899988877664 5666788999988777653
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.2e-09 Score=92.26 Aligned_cols=87 Identities=22% Similarity=0.326 Sum_probs=72.4
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeeeeE
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEH 108 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~ 108 (852)
|.|+|..|+++...+... +.+ .++|||+|.+++...+||++ +.||.|||.
T Consensus 1 L~I~V~~~RdvdH~~~~~-----~~~----------------------~~etyV~IKved~~kaRTr~---srnd~WnE~ 50 (109)
T cd08689 1 LTITITSARDVDHIASPR-----FSK----------------------RPETYVSIKVEDVERARTKP---SRNDRWNED 50 (109)
T ss_pred CEEEEEEEecCccccchh-----hcc----------------------CCCcEEEEEECCEEEEeccC---CCCCcccce
Confidence 689999999998766311 110 17999999999997799998 589999999
Q ss_pred EEEeecCCCceEEEEEEecCCCCCceeeeEeeeceecc
Q 045478 109 FCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKIL 146 (852)
Q Consensus 109 f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~ 146 (852)
|.|++ +-..+++++|+|......-.||...|++.+|.
T Consensus 51 F~i~V-dk~nEiel~VyDk~~~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 51 FEIPV-EKNNEEEVIVYDKGGDQPVPVGLLWLRLSDIA 87 (109)
T ss_pred EEEEe-cCCcEEEEEEEeCCCCeecceeeehhhHHHHH
Confidence 99999 46889999999986655778999999999887
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.5e-09 Score=124.73 Aligned_cols=124 Identities=25% Similarity=0.421 Sum_probs=101.8
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCe
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPF 104 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~ 104 (852)
-.|.|+|.+.+|.||++.|..+. +||||.+.+.+..+++|+++++++||+
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~------------------------------sDpfv~~~ln~k~vyktkv~KktlNPv 1087 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGY------------------------------SDPFVKLFLNEKSVYKTKVVKKTLNPV 1087 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCC------------------------------CCceEEEEecceecccccchhccCCCC
Confidence 37999999999999999999887 999999999999899999999999999
Q ss_pred eeeEEEEeecCCCce-EEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeeec
Q 045478 105 WDEHFCVPVAHSVVN-LEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPI 180 (852)
Q Consensus 105 WnE~f~~~~~~~~~~-l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~ 180 (852)
|||+|.+++.....+ +++.|+|+|.-. +++||.+.|+|..+..|.....-.+| +.+. ....+|.++....|.+.
T Consensus 1088 wNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~l-dgk~-~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1088 WNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPL-DGKT-FIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred ccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeec-cCcc-eEecccEeecceecchh
Confidence 999999999865544 599999999877 89999999999999987766555565 3222 23445666655555443
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-08 Score=116.76 Aligned_cols=123 Identities=18% Similarity=0.323 Sum_probs=92.7
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCC-cCCCcEEEEEECC----eeEEEeeeecCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSM-ITSNPYVSVCLSG----ATVAQTRVISNC 100 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sdpYv~v~l~~----~~~~rT~vi~~s 100 (852)
..+|.|+|++|.+++.. .... +.+. ...||||+|.+-+ ....||+++.++
T Consensus 469 ~~~L~V~VisGq~l~lp-~~~~------------------------~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN 523 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLD-FSHT------------------------HFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDN 523 (599)
T ss_pred cceEEEEEEECcccCCC-Cccc------------------------cCCccCCCCceEEEEEeccCCCCcceeeeeccCC
Confidence 57899999999998531 1111 0000 1159999999854 234699999999
Q ss_pred CCCeeeeEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 101 ENPFWDEHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
.||+|||+|.|++..+. .-+.|+|+|+|..+ ++++|++.||+..|..|. +|++|.+..|++.. ...|-+.++|
T Consensus 524 ~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~-~a~Llv~f~~ 598 (599)
T PLN02952 524 WYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLK-NVRLLMRFIF 598 (599)
T ss_pred CCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCC-CEEEEEEEEe
Confidence 99999999999877653 45689999998877 899999999999999987 59999988887653 3444444443
|
|
| >PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs) | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.5e-10 Score=74.55 Aligned_cols=27 Identities=59% Similarity=0.986 Sum_probs=18.5
Q ss_pred cccCccceEEecCCCCCCCCceEEEEcccCCCCCc
Q 045478 361 LFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGR 395 (852)
Q Consensus 361 ~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r 395 (852)
.++||||++|||++ +||+||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR--------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT--------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC--------EEEECceecCCCC
Confidence 36999999999998 9999999999853
|
PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.7e-08 Score=94.27 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=76.5
Q ss_pred EEEEEEEecCCCCCCC--cchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCCC--
Q 045478 29 LDLSILEAKSLPNMDL--ITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCEN-- 102 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~n-- 102 (852)
|+|.|.+|++++..+. .+. . .+||||++.+.+ ....+|.|..++.|
T Consensus 2 LRViIw~~~~v~~~~~~~~g~----~------------------------~sD~yVK~~L~~~~~~kqkTDVHyrslnG~ 53 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGE----K------------------------MSDIYVKGWLDGLEEDKQKTDVHYRSLDGE 53 (133)
T ss_pred EEEEEEECcCCcccccccCCc----c------------------------ccCeEEEEEEccCcccccccceEEecCCCC
Confidence 7899999999765543 221 0 189999999976 45689999999999
Q ss_pred CeeeeEEEEeecCC------------------------CceEEEEEEecCCCC-CceeeeEeeeceeccCCCc
Q 045478 103 PFWDEHFCVPVAHS------------------------VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNE 150 (852)
Q Consensus 103 P~WnE~f~~~~~~~------------------------~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~ 150 (852)
|.||+.|.|++..+ ...+.++|||.|.++ +++||.+.+++..+..+..
T Consensus 54 ~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 54 GNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred cEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence 99999999987651 245699999999998 9999999999998886643
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.6e-08 Score=113.38 Aligned_cols=125 Identities=18% Similarity=0.298 Sum_probs=94.0
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s 100 (852)
...+|.|+|+.+.+++....... +. .-+ ..||||+|.+-+ ....||++..|+
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~-----~~------------------~~s-~~DpyV~Vei~Gvp~D~~~~kT~v~~n~ 522 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTH-----FD------------------SYS-PPDFFVRVGIAGAPVDEVMEKTKIEYDT 522 (598)
T ss_pred cCcEEEEEEEEccCccCCCcccc-----CC------------------CCC-CCCceEEEEEEECCCCCcccceeccCCC
Confidence 35789999999998753110000 00 000 169999999854 234699999999
Q ss_pred CCCeeeeEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 101 ENPFWDEHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
.||.|||+|.|++..+. .-|.|+|+|+|..+ ++++|+..||+..|..|- +..+|.+..|.++.. ..|-++++|
T Consensus 523 ~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~-~~Ll~~f~~ 597 (598)
T PLN02230 523 WTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSS-TRLLMRFEF 597 (598)
T ss_pred CCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCC-CeeEEEEEe
Confidence 99999999999977654 56699999999866 999999999999999986 468999999987644 566666655
|
|
| >PRK05443 polyphosphate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-08 Score=117.55 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=87.1
Q ss_pred HHHHHHHHhccc-----eEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCch
Q 045478 549 SAYVKAIRSAQH-----FIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSA 623 (852)
Q Consensus 549 ~ayl~aI~~Ak~-----~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~ 623 (852)
+..++.|++|.+ .|.|+-..+.+. ..+..++..| +.+|++|+|+++..+.
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~-----------------s~iv~aL~~A--a~~Gk~V~vlve~kar------ 405 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKD-----------------SPIVDALIEA--AENGKQVTVLVELKAR------ 405 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCC-----------------HHHHHHHHHH--HHcCCEEEEEEccCcc------
Confidence 367889999999 899876444421 2355556665 3477999999996431
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEE
Q 045478 624 AVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVH 703 (852)
Q Consensus 624 ~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 703 (852)
+..++... ..+.|.++|+++.| . |. ...+|
T Consensus 406 ----fde~~n~~-------~~~~L~~aGv~V~y---------~----------~~--------------------~~k~H 435 (691)
T PRK05443 406 ----FDEEANIR-------WARRLEEAGVHVVY---------G----------VV--------------------GLKTH 435 (691)
T ss_pred ----ccHHHHHH-------HHHHHHHcCCEEEE---------c----------cC--------------------Cccce
Confidence 11122222 26899999998642 1 11 25899
Q ss_pred eeEEEEcce-------eEEecCcCcccCCCCCCCCceeEEEEecCccc
Q 045478 704 AKGMIVDDE-------YVIMGSANINQRSLEGSRDTEIAMGAYQPHYT 744 (852)
Q Consensus 704 SKlmIVDD~-------~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~ 744 (852)
||+++||++ |+.|||+|+|.||+..+ +|+++.+.|++.+
T Consensus 436 aK~~lid~~e~~~~~~~~~iGTgN~n~~s~~~y--~D~~l~t~d~~i~ 481 (691)
T PRK05443 436 AKLALVVRREGGGLRRYVHLGTGNYNPKTARLY--TDLSLLTADPEIG 481 (691)
T ss_pred eEEEEEEeecCCceeEEEEEcCCCCCcchhhhc--cceeEEEeChHHH
Confidence 999999999 99999999999999866 9999999888654
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-08 Score=109.73 Aligned_cols=135 Identities=24% Similarity=0.471 Sum_probs=108.7
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCe
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPF 104 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~ 104 (852)
+.|.|-|+|..|++||-||..+. ..|.||.|.+.+.. .||.|..+++||.
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd-----------------------------~tdafveik~~n~t-~ktdvf~kslnp~ 50 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASD-----------------------------LTDAFVEIKFANTT-FKTDVFLKSLNPQ 50 (1169)
T ss_pred CCCcceeEEEeccCCcccccccc-----------------------------cchheeEEEecccc-eehhhhhhhcCCc
Confidence 36899999999999999997654 26999999999888 8999999999999
Q ss_pred ee-eEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccC----------CCceeeeeeeccCCCCCCCCCC
Q 045478 105 WD-EHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILC----------GNEVDDWFPIAGSYGKNLKPFP 169 (852)
Q Consensus 105 Wn-E~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~----------g~~~~~w~~L~~~~g~~~k~~g 169 (852)
|| +-|.|.+.+. ...+.+++.|+|..+ ++.||+|.|.++.+.. |..+.+||++.+.-+. -.|
T Consensus 51 wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg---irg 127 (1169)
T KOG1031|consen 51 WNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG---IRG 127 (1169)
T ss_pred ccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc---ccc
Confidence 99 7799998763 456799999999988 8999999999988762 4457899999887542 356
Q ss_pred EEEEEEE---eeecCCcccccCCCCC
Q 045478 170 QLHVSMQ---YKPIGQIPLYKDGVGA 192 (852)
Q Consensus 170 ~l~l~l~---f~~~~~~~~~~~gv~~ 192 (852)
+|.+-++ |.++.+.|.-+.|+..
T Consensus 128 einvivkvdlfndlnkf~qsscgvkf 153 (1169)
T KOG1031|consen 128 EINVIVKVDLFNDLNKFPQSSCGVKF 153 (1169)
T ss_pred eeEEEEEEeehhhhhhccccccccee
Confidence 7776665 4566666666666554
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-07 Score=109.46 Aligned_cols=96 Identities=24% Similarity=0.435 Sum_probs=79.3
Q ss_pred CCcEEEEEECC----eeEEEeeeecCCCCCeeeeEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCce
Q 045478 78 SNPYVSVCLSG----ATVAQTRVISNCENPFWDEHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEV 151 (852)
Q Consensus 78 sdpYv~v~l~~----~~~~rT~vi~~s~nP~WnE~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~ 151 (852)
.||||+|.+.+ ....||+++.++.||.|||+|.|.+..+. .-+.|+|+|+|..+ +++||+..||+..|..|-
T Consensus 479 ~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy-- 556 (581)
T PLN02222 479 PDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI-- 556 (581)
T ss_pred CCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc--
Confidence 69999999854 23479999999999999999999977654 56699999998766 899999999999999886
Q ss_pred eeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 152 DDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 152 ~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
+..+|.+..|.++.. ..|-+.++|
T Consensus 557 -R~V~L~~~~g~~l~~-a~Lfv~~~~ 580 (581)
T PLN02222 557 -RAFPLHSRKGEKYKS-VKLLVKVEF 580 (581)
T ss_pred -ceEEccCCCcCCCCC-eeEEEEEEe
Confidence 468999999987644 566666655
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=108.85 Aligned_cols=99 Identities=21% Similarity=0.327 Sum_probs=82.3
Q ss_pred CCcEEEEEECCe----eEEEeeeecCCCCCee-eeEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCc
Q 045478 78 SNPYVSVCLSGA----TVAQTRVISNCENPFW-DEHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNE 150 (852)
Q Consensus 78 sdpYv~v~l~~~----~~~rT~vi~~s~nP~W-nE~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~ 150 (852)
.||||+|.+.+. ...||+++.|+.||.| ||+|.|++..+. .-|.|+|+|+|..+ +++||+..||+..|..|-
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY- 536 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV- 536 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe-
Confidence 699999998542 3369999999999999 999999987654 56699999998766 899999999999999886
Q ss_pred eeeeeeeccCCCCCCCCCCEEEEEEEeeec
Q 045478 151 VDDWFPIAGSYGKNLKPFPQLHVSMQYKPI 180 (852)
Q Consensus 151 ~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~ 180 (852)
+.++|.+..|++.. .++|-+.+.+.+.
T Consensus 537 --R~VpL~~~~G~~l~-~atLfv~~~~~~~ 563 (567)
T PLN02228 537 --RAVRLHDRAGKAYK-NTRLLVSFALDPP 563 (567)
T ss_pred --eEEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence 46899999998754 4678888887764
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-07 Score=109.70 Aligned_cols=122 Identities=27% Similarity=0.421 Sum_probs=94.8
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEee-eecCCCC
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTR-VISNCEN 102 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~-vi~~s~n 102 (852)
+|.|+|+++++++...-.+. ...+ +||||.|.+-+. ...+|+ |..|+-|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~-------------------------~~~~-~dP~v~VeI~Gvp~D~~~~~Tk~v~~Ngfn 670 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTK-------------------------FGEI-SDPDVYVEIAGVPADCAEQKTKVVKNNGFN 670 (746)
T ss_pred eeEEEEEecCcccCCCCCCc-------------------------cccc-CCCCEEEEEcccccchhhhhceeeccCCcC
Confidence 89999999997654221110 0111 799999998653 447999 5567999
Q ss_pred CeeeeEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 103 PFWDEHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 103 P~WnE~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
|.|+|+|.|++..+. .-|.|.|.|.|..+ |+|+|+..||+..|..|-. -++|.+..|+.+ ....|-+.+++.+
T Consensus 671 P~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyR---hVpL~~~~G~~~-~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 671 PIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYR---HVPLLSREGEAL-SSASLFVRIAIVE 745 (746)
T ss_pred cccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCcee---eeeecCCCCccc-cceeEEEEEEEec
Confidence 999999999998765 55699999999999 9999999999999998863 488888888774 4467777777654
|
|
| >KOG3603 consensus Predicted phospholipase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.8e-07 Score=99.23 Aligned_cols=155 Identities=17% Similarity=0.276 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccc--cccccc
Q 045478 240 QCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHD--NLFIKT 317 (852)
Q Consensus 240 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~--~~~~~~ 317 (852)
.-.++|+..|..|+++|||......|......+. . -+.|+++|++||-|||+||+||-...-+.. ...+.
T Consensus 276 ~DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~~------~-fw~iDdaiR~aa~RgV~vR~lvs~~~~~~~~m~~~L~- 347 (456)
T KOG3603|consen 276 WDLEAILNTIDEAQKFVYISVMDYFPSTIYSKNH------R-FWEIDDAIRRAAVRGVKVRLLVSCWKHSEPSMFRFLR- 347 (456)
T ss_pred hhHHHHHHHHHHHhhheeeeehhccchheeecCc------c-hhhhhHHHHHHhhcceEEEEEEeccCCCCchHHHHHH-
Confidence 3478999999999999999987777764333221 1 259999999999999999999932211110 00000
Q ss_pred cccccCCcHHHHhhhcCCCCEEEec--CCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCc
Q 045478 318 EGVMQTHDEETRKFFKHSSVNCVLA--PRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGR 395 (852)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~gv~v~~~--~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r 395 (852)
.+ +.....+++..|+|.++ |..... ..+....+|.|++|-+. .||+|.-|.+.++
T Consensus 348 -SL-----q~l~~~~~~~~iqvk~f~VP~~~~~--------~ip~~Rv~HnKymVTe~---------aayIGTSNws~dY 404 (456)
T KOG3603|consen 348 -SL-----QDLSDPLENGSIQVKFFIVPQTNIE--------KIPFARVNHNKYMVTES---------AAYIGTSNWSGDY 404 (456)
T ss_pred -HH-----HHhcCccccCceEEEEEEeCCCccc--------cCchhhhccceeEEeec---------ceeeeccCCCccc
Confidence 00 11122234566777654 322111 22334689999999987 7999999999877
Q ss_pred cCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceee-----eeChHHHHHHHHHHHHHhhh
Q 045478 396 YDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCK-----VEGPAAYDILINFEQRWRRS 457 (852)
Q Consensus 396 ~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~-----v~Gpaa~dl~~~F~~rW~~~ 457 (852)
|-... -+++. -.|+++.+|...|+.+|+..
T Consensus 405 f~~Ta--------------------------------G~~ivv~q~~~~~~~~~ql~~vFeRdW~S~ 439 (456)
T KOG3603|consen 405 FTSTA--------------------------------GTAIVVRQTPHKGTLVSQLKAVFERDWNST 439 (456)
T ss_pred eeccC--------------------------------ceEEEEecCCCCCcHHHHHHHHHhhccccc
Confidence 74210 01111 24689999999999999964
|
|
| >smart00155 PLDc Phospholipase D | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.7e-08 Score=67.13 Aligned_cols=26 Identities=54% Similarity=0.685 Sum_probs=24.7
Q ss_pred EEEEeeEEEEcceeEEecCcCcccCC
Q 045478 700 IYVHAKGMIVDDEYVIMGSANINQRS 725 (852)
Q Consensus 700 iyvHSKlmIVDD~~~iIGSANln~RS 725 (852)
.+.|+|+||||+++++|||+||+.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 48999999999999999999999987
|
Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be |
| >PRK09428 pssA phosphatidylserine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=6e-07 Score=102.58 Aligned_cols=137 Identities=19% Similarity=0.198 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC--CCCCc
Q 045478 545 KSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPE--GNPNS 622 (852)
Q Consensus 545 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~pe--g~~~~ 622 (852)
..+..+++++|++|+++||||+-||-... ++.++..++.+|.++++||+|+|++..+-. |-..+
T Consensus 34 ~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D~--------------~g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg~iG~ 99 (451)
T PRK09428 34 ADFRETLLEKIASAKKRIYIVALYLEDDE--------------AGREILDALYQAKQQNPELDIKVLVDWHRAQRGLIGA 99 (451)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEecCCc--------------hHHHHHHHHHHHHhcCCCcEEEEEEEccccccccccc
Confidence 46788999999999999999999997322 257788888888777899999999984210 00000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeE
Q 045478 623 AAVQEILYWQGQTMSMMYKIVAQALQDNG--LSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMI 700 (852)
Q Consensus 623 ~~~~~~~~~~~~t~~~~~~~i~~~L~~~G--v~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 700 (852)
.. . .....+++.|.+++ +++ .+|.+..+- +....
T Consensus 100 ~~--------~----~~~~~~~~~l~~~~~gv~v--------~~f~~p~~~------------------------~e~~g 135 (451)
T PRK09428 100 AA--------S----NTNADWYCEMAQEYPGVDI--------PVYGVPVNT------------------------REALG 135 (451)
T ss_pred CC--------C----CcCHHHHHHHHHhCCCceE--------EEcCCcccc------------------------chhhh
Confidence 00 0 00012356777654 553 345321100 00012
Q ss_pred EEEeeEEEEcceeEEecCcCcccCCCCC----CCCceeEEEEecCc
Q 045478 701 YVHAKGMIVDDEYVIMGSANINQRSLEG----SRDTEIAMGAYQPH 742 (852)
Q Consensus 701 yvHSKlmIVDD~~~iIGSANln~RSm~~----n~DsEi~v~i~d~~ 742 (852)
..|-|++||||++++.| ||+++--+.. ..|. .+.|.+|.
T Consensus 136 r~HrKi~IiD~~v~ysG-aNi~d~Yl~~~~~~r~Dr--y~~i~g~~ 178 (451)
T PRK09428 136 VLHLKGFIIDDTVLYSG-ASLNNVYLHQHDKYRYDR--YHLIRNAE 178 (451)
T ss_pred hceeeEEEECCCEEEec-ccccHHHhcCCcccCcce--EEEEeCch
Confidence 47999999999999999 8999855542 2355 44566654
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.9e-08 Score=108.86 Aligned_cols=92 Identities=20% Similarity=0.348 Sum_probs=73.9
Q ss_pred EEeeeecCCCCCeeeeEEEEeecCCC-ceEEEEEEecCCC-------------------------------------CCc
Q 045478 92 AQTRVISNCENPFWDEHFCVPVAHSV-VNLEFHVKDNDIL-------------------------------------GAE 133 (852)
Q Consensus 92 ~rT~vi~~s~nP~WnE~f~~~~~~~~-~~l~~~V~d~d~~-------------------------------------~~~ 133 (852)
.-|.|.+.|+||+|+|.|.|.+.+-. ...++-+||+|-- .|+
T Consensus 179 katsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDD 258 (1103)
T KOG1328|consen 179 KATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDD 258 (1103)
T ss_pred hhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccc
Confidence 45788888999999999999998754 4569999997620 268
Q ss_pred eeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeeecCCccc
Q 045478 134 LIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPL 185 (852)
Q Consensus 134 ~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~~~~~~ 185 (852)
|+|.+.||+.+|.. ..++.||.| .++....+..|.++++++....+....
T Consensus 259 FLGciNipl~EiP~-~Gld~WFkL-epRS~~S~VqG~~~LklwLsT~e~~~a 308 (1103)
T KOG1328|consen 259 FLGCINIPLAEIPP-DGLDQWFKL-EPRSDKSKVQGQVKLKLWLSTKEEGRA 308 (1103)
T ss_pred cccccccchhcCCc-chHHHHhcc-CcccccccccceEEEEEEEeeeccccc
Confidence 99999999999974 348899999 555555688999999999987765443
|
|
| >COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-06 Score=100.10 Aligned_cols=135 Identities=22% Similarity=0.290 Sum_probs=96.4
Q ss_pred HHHHHHHHhccceEEEEE-eecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccc
Q 045478 243 EEICHAVLEARHLIYIIG-WSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVM 321 (852)
Q Consensus 243 ~~l~~aI~~Ak~~I~I~~-w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~ 321 (852)
..++++|.+|+++|+|+. |.+ | +..+.++|+.++++||+|+|++ +..+...... +
T Consensus 273 ~~~~~~i~~A~~~i~i~~pYf~-~----------------~~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~~------~ 328 (438)
T COG1502 273 RLLLKAINSARESILIATPYFV-P----------------DRELLAALKAAARRGVDVRIII-PSLGANDSAI------V 328 (438)
T ss_pred HHHHHHHHhhceEEEEEcCCcC-C----------------CHHHHHHHHHHHhcCCEEEEEe-CCCCCCChHH------H
Confidence 678999999999999997 533 1 2588899999999999999998 7432111110 0
Q ss_pred cCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCc
Q 045478 322 QTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEH 401 (852)
Q Consensus 322 ~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H 401 (852)
........+.+...|+++..++. + ...|.|++|||++ ++++|+.|++..-+..
T Consensus 329 ~~~~~~~~~~l~~~gv~i~~~~~--------------g--~~lH~K~~iiD~~--------~~~vGS~N~~~rS~~l--- 381 (438)
T COG1502 329 HAAYRAYLKELLEAGVKVYEYPG--------------G--AFLHSKVMIIDDR--------TVLVGSANLDPRSLRL--- 381 (438)
T ss_pred HHHHHHHHHHHHHhCCEEEEecC--------------C--CcceeeEEEEcCC--------EEEEeCCcCCHhHHHH---
Confidence 00012445667788999865432 0 2579999999998 9999999999832210
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh-HHHHHHHHHHHHHhhh
Q 045478 402 RLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP-AAYDILINFEQRWRRS 457 (852)
Q Consensus 402 ~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~ 457 (852)
+ -.+.+.|+.+ .+.++...|...|...
T Consensus 382 ------------N-----------------~E~~~~i~d~~~~~~~~~~~~~~~~~s 409 (438)
T COG1502 382 ------------N-----------------FEVGLVIEDPELALKLRREFEADLARS 409 (438)
T ss_pred ------------h-----------------hhheeEEeCHHHHHHHHHHHHHHHHHH
Confidence 1 1467888888 7888999998776653
|
|
| >PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs) | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.4e-07 Score=61.79 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=18.1
Q ss_pred EEEEeeEEEEcceeEEecCcCcccCC
Q 045478 700 IYVHAKGMIVDDEYVIMGSANINQRS 725 (852)
Q Consensus 700 iyvHSKlmIVDD~~~iIGSANln~RS 725 (852)
...|+|++||||++++|||+||+.|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 47999999999999999999999874
|
PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C. |
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.8e-07 Score=102.06 Aligned_cols=92 Identities=28% Similarity=0.400 Sum_probs=80.8
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe------eEEEeeeec
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA------TVAQTRVIS 98 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~------~~~rT~vi~ 98 (852)
-+.+|.|.|+-|+++-+.|..|. |||||+|.+... .+.||+|++
T Consensus 945 n~q~L~veVlhA~diipLD~NGl------------------------------SDPFVviEl~P~~~fp~v~~q~T~V~~ 994 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGL------------------------------SDPFVVIELIPKFRFPAVPVQKTKVVS 994 (1103)
T ss_pred cccchhhhhhccccccccCCCCC------------------------------CCCeEEEEeccccccccchhhhhhhhh
Confidence 46778899999999999988887 999999999764 467999999
Q ss_pred CCCCCeeeeEEEEeecCC-----CceEEEEEEecCCCC-CceeeeEeeeceecc
Q 045478 99 NCENPFWDEHFCVPVAHS-----VVNLEFHVKDNDILG-AELIGVVQIPVEKIL 146 (852)
Q Consensus 99 ~s~nP~WnE~f~~~~~~~-----~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~ 146 (852)
.|+||+++|+|.|.+... ...+.|+|+|+|.+. ++|-|.+.+.+.++.
T Consensus 995 rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 995 RTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred ccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 999999999999998753 345799999999998 999999999998876
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1e-05 Score=93.16 Aligned_cols=124 Identities=27% Similarity=0.481 Sum_probs=92.4
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe-----eEEEeeeec
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA-----TVAQTRVIS 98 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~-----~~~rT~vi~ 98 (852)
++.=+|.|.|+.|+.|+..... + .-|+|.|.+-++ +..+|.|+.
T Consensus 1062 l~p~~lsv~vigaRHL~k~gr~----------------i---------------~cPfVevEiiGa~~Dt~~~~t~~V~d 1110 (1267)
T KOG1264|consen 1062 LLPMTLSVKVLGARHLPKLGRS----------------I---------------ACPFVEVEIIGAEYDTNKFKTTVVND 1110 (1267)
T ss_pred ccceEEEEEEeeccccccCCCC----------------c---------------cCCcEEEEEeccccCCCceEEEEecc
Confidence 3456789999999999843211 1 469999998654 445667778
Q ss_pred CCCCCeee-eEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEE
Q 045478 99 NCENPFWD-EHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSM 175 (852)
Q Consensus 99 ~s~nP~Wn-E~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l 175 (852)
|+.||.|| |.|+|.+.++. ..+.|.|.|.|.++ ..|||++..|+..|.+|- +-.+|.+.-...+ --..|-+.+
T Consensus 1111 NGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdl-ELaSLLv~i 1186 (1267)
T KOG1264|consen 1111 NGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDL-ELASLLVFI 1186 (1267)
T ss_pred CCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc---eeeecccCchhhh-hhhhheeee
Confidence 99999999 99999998875 56699999999999 679999999999999885 3466644333221 124566777
Q ss_pred EeeecCC
Q 045478 176 QYKPIGQ 182 (852)
Q Consensus 176 ~f~~~~~ 182 (852)
+..|+..
T Consensus 1187 ~m~~~~~ 1193 (1267)
T KOG1264|consen 1187 EMRPVLE 1193 (1267)
T ss_pred EeccccC
Confidence 7777654
|
|
| >KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00018 Score=77.61 Aligned_cols=130 Identities=15% Similarity=0.113 Sum_probs=75.3
Q ss_pred hhhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhh--cCCeEEEEEeCCC-ccccccc
Q 045478 238 HGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQ--EGVRVLLLIWDDK-TSHDNLF 314 (852)
Q Consensus 238 ~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~--~GV~VriLvwD~~-~s~~~~~ 314 (852)
|.++|+.+...|.+||++|+|+.- ||- .....|.+.|..+.+ .-.+|.||+ |.. |+...++
T Consensus 37 p~~fy~~lk~~I~~aq~Ri~lasL------YlG---------~~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~ 100 (469)
T KOG3964|consen 37 PPEFYQRLKKLIKKAQRRIFLASL------YLG---------KLERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPN 100 (469)
T ss_pred CHHHHHHHHHHHHHhhheeeeeee------ccc---------hhHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCcc
Confidence 468999999999999999999864 332 124788899988865 479999998 874 3322221
Q ss_pred ccccccccCCcHHHHhhhcCCCCEEEecCC--CCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCC
Q 045478 315 IKTEGVMQTHDEETRKFFKHSSVNCVLAPR--YASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLC 392 (852)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~--~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~ 392 (852)
-.+.-+. ..-.+++ ...|++.++.. .-+....+...+........|-|+.-+|++ ..+-|.|++
T Consensus 101 ~~s~llp---~~l~kkf--~e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde---------viiSGanls 166 (469)
T KOG3964|consen 101 SCSALLP---VWLGKKF--PERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE---------VIISGANLS 166 (469)
T ss_pred cchhhch---HHHhhhh--hhhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHh---------hhcccccch
Confidence 1110000 0011111 22455554421 101000111111112235789999999995 578899999
Q ss_pred CCccC
Q 045478 393 DGRYD 397 (852)
Q Consensus 393 ~~r~D 397 (852)
.+++.
T Consensus 167 ~dyfT 171 (469)
T KOG3964|consen 167 NDYFT 171 (469)
T ss_pred hhhhc
Confidence 85543
|
|
| >PF13918 PLDc_3: PLD-like domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.4e-05 Score=73.72 Aligned_cols=58 Identities=28% Similarity=0.533 Sum_probs=41.9
Q ss_pred HHHHHHHHHhccceEEEeecccccC------CCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCC
Q 045478 548 HSAYVKAIRSAQHFIYIENQYFIGS------SYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGN 619 (852)
Q Consensus 548 ~~ayl~aI~~Ak~~IyIEnqYFi~~------~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~ 619 (852)
.+|.++.|..|++||||+---|.+. ...||. ...|++-|+ + .|||+|++++..|...+
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~-----------ID~ALR~AA-~--~R~V~VRlLIS~W~ht~ 147 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPV-----------IDDALRRAA-I--ERGVKVRLLISCWKHTD 147 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchh-----------HHHHHHHHH-H--HcCCeEEEEEeecCCCC
Confidence 5599999999999999997766653 225773 334444443 2 47899999999986543
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.5e-05 Score=73.37 Aligned_cols=83 Identities=25% Similarity=0.523 Sum_probs=65.8
Q ss_pred CcCCCcEEEEEEC---CeeEEEeeeecCCCCCeeeeEEEEeec--------C--------CCceEEEEEEecCCC-----
Q 045478 75 MITSNPYVSVCLS---GATVAQTRVISNCENPFWDEHFCVPVA--------H--------SVVNLEFHVKDNDIL----- 130 (852)
Q Consensus 75 ~~~sdpYv~v~l~---~~~~~rT~vi~~s~nP~WnE~f~~~~~--------~--------~~~~l~~~V~d~d~~----- 130 (852)
.++-++||++.+. +....+|+++.++-.|+++.+|.|+|. . ...++.|+||....-
T Consensus 30 ~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~ 109 (143)
T cd08683 30 TVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDT 109 (143)
T ss_pred ecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccce
Confidence 4458999999964 455689999999999999999999986 1 135689999986532
Q ss_pred ------CCceeeeEeeeceeccC-CCceeeeeee
Q 045478 131 ------GAELIGVVQIPVEKILC-GNEVDDWFPI 157 (852)
Q Consensus 131 ------~~~~iG~~~i~l~~l~~-g~~~~~w~~L 157 (852)
+|=+||.++||+.+|.. ...+.+||++
T Consensus 110 ~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 110 IKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred eccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 35589999999999883 4458899985
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00029 Score=74.51 Aligned_cols=189 Identities=17% Similarity=0.193 Sum_probs=108.0
Q ss_pred EEEeeecCCcccccCCCCCCCCCCCCCccCccccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhcc
Q 045478 174 SMQYKPIGQIPLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEAR 253 (852)
Q Consensus 174 ~l~f~~~~~~~~~~~gv~~~~~~~g~~~~~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak 253 (852)
+..|.|...+.. ....-.|.|. -...+.-.+|++|... |....| .+=+.+-+.|++|+
T Consensus 90 S~TYwP~~SD~~------~P~LdLGWP~-~~~~~g~Tr~~vy~qP--p~~~~p-------------~IKE~vR~~I~~A~ 147 (284)
T PF07894_consen 90 SGTYWPMQSDTE------PPPLDLGWPE-TPSYKGVTRATVYFQP--PKDGQP-------------HIKEVVRRMIQQAQ 147 (284)
T ss_pred CcccCCCcCCCC------CCCCCCCCCC-CCcccCCceEEEEeCC--CCCCCC-------------CHHHHHHHHHHHhc
Confidence 667777654321 1112245554 1222344789999864 222222 34677889999999
Q ss_pred ceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccccCCcHHHHhhhc
Q 045478 254 HLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFK 333 (852)
Q Consensus 254 ~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 333 (852)
+-|-|..=.|. |. .-|.|+|.++-+|||-||||+ |..+...++.+-.. +.. ....++
T Consensus 148 kVIAIVMD~FT-------D~---------dIf~DLleAa~kR~VpVYiLL-D~~~~~~Fl~Mc~~--~~v----~~~~~~ 204 (284)
T PF07894_consen 148 KVIAIVMDVFT-------DV---------DIFCDLLEAANKRGVPVYILL-DEQNLPHFLEMCEK--LGV----NLQHLK 204 (284)
T ss_pred ceeEEEeeccc-------cH---------HHHHHHHHHHHhcCCcEEEEe-chhcChHHHHHHHH--CCC----ChhhcC
Confidence 99998864432 11 456666665559999999998 98754322111000 000 011122
Q ss_pred CCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCCCcccccC
Q 045478 334 HSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFAN 413 (852)
Q Consensus 334 ~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~~~ 413 (852)
+++|+... +..+............|+|+++||++ .+..|+--+++.- ..-|+
T Consensus 205 --nmrVRsv~-----G~~y~~rsg~k~~G~~~eKF~lvD~~--------~V~~GSYSFtWs~--~~~~r----------- 256 (284)
T PF07894_consen 205 --NMRVRSVT-----GCTYYSRSGKKFKGQLKEKFMLVDGD--------KVISGSYSFTWSS--SRVHR----------- 256 (284)
T ss_pred --CeEEEEec-----CCeeecCCCCeeeCcccceeEEEecc--------cccccccceeecc--ccccc-----------
Confidence 33333110 00111111112345789999999998 8899988777621 11111
Q ss_pred CCCCCCCCCCCCCCCCceeeceeeeeChHHHHHHHHHHHHH
Q 045478 414 DFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRW 454 (852)
Q Consensus 414 d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW 454 (852)
-+-..+.|.+|....+-|..-.
T Consensus 257 -------------------~~~~~~tGq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 257 -------------------NLVTVLTGQIVESFDEEFRELY 278 (284)
T ss_pred -------------------ceeEEEeccccchHhHHHHHHH
Confidence 2567799999999999997653
|
Some members of this family are annotated as being potential phospholipases but no literature was found to support this. |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.63 E-value=8.1e-05 Score=85.44 Aligned_cols=107 Identities=20% Similarity=0.435 Sum_probs=81.4
Q ss_pred CCcEEEEEECCe---eEEEeeeecCCCCCeeeeEEEEeecCC----------------CceEEEEEEec-CCCC-Cceee
Q 045478 78 SNPYVSVCLSGA---TVAQTRVISNCENPFWDEHFCVPVAHS----------------VVNLEFHVKDN-DILG-AELIG 136 (852)
Q Consensus 78 sdpYv~v~l~~~---~~~rT~vi~~s~nP~WnE~f~~~~~~~----------------~~~l~~~V~d~-d~~~-~~~iG 136 (852)
+|||++|...+. ...+|++++++.+|.|+|.|.|.+... ...+.+++|++ +... ++|+|
T Consensus 151 ~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlG 230 (800)
T KOG2059|consen 151 CDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLG 230 (800)
T ss_pred CCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhce
Confidence 899999998653 236999999999999999999987654 23468888884 4444 89999
Q ss_pred eEeeeceeccCCCceeeeeeeccC-CCCC---CCCCCEEEEEEEeeecCCcc
Q 045478 137 VVQIPVEKILCGNEVDDWFPIAGS-YGKN---LKPFPQLHVSMQYKPIGQIP 184 (852)
Q Consensus 137 ~~~i~l~~l~~g~~~~~w~~L~~~-~g~~---~k~~g~l~l~l~f~~~~~~~ 184 (852)
++++|+..+.....-+.||.|.-. .|+. ...-|.+++.+.|+.....|
T Consensus 231 evrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vlp 282 (800)
T KOG2059|consen 231 EVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVLP 282 (800)
T ss_pred eEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeeceecc
Confidence 999999988865667789999643 2322 22347899999999766554
|
|
| >smart00155 PLDc Phospholipase D | Back alignment and domain information |
|---|
Probab=97.60 E-value=5e-05 Score=51.70 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=22.4
Q ss_pred ccCccceEEecCCCCCCCCceEEEEcccCCCC
Q 045478 362 FTHHQKCVIVDTPASGNNRKISAFIGGLDLCD 393 (852)
Q Consensus 362 ~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~ 393 (852)
.++|+|++|||++ .+|+||.|++.
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~ 26 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDG 26 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCC
Confidence 4789999999998 99999999987
|
Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be |
| >TIGR03705 poly_P_kin polyphosphate kinase 1 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0011 Score=79.12 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=79.3
Q ss_pred HHHHHHHHhccc-----eEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCch
Q 045478 549 SAYVKAIRSAQH-----FIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSA 623 (852)
Q Consensus 549 ~ayl~aI~~Ak~-----~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~ 623 (852)
...++.|++|.+ .|.|+-.-+.+. ..++.++.+|. .+|++|.|++-...--+ ..
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~-----------------s~ii~aL~~Aa--~~Gk~V~v~veLkArfd--e~ 400 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTLYRTSKD-----------------SPIIDALIEAA--ENGKEVTVVVELKARFD--EE 400 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEecCC-----------------cHHHHHHHHHH--HcCCEEEEEEEehhhcc--ch
Confidence 467889999998 899975434321 13556666663 46799999998532111 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEE
Q 045478 624 AVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVH 703 (852)
Q Consensus 624 ~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 703 (852)
..+ ...+.|.++|+++. |++ ....+|
T Consensus 401 ----------~ni-----~wa~~le~aG~~vi---------yg~------------------------------~~~k~H 426 (672)
T TIGR03705 401 ----------ANI-----RWARRLEEAGVHVV---------YGV------------------------------VGLKTH 426 (672)
T ss_pred ----------hhH-----HHHHHHHHcCCEEE---------EcC------------------------------CCeeee
Confidence 111 12568899999863 221 025899
Q ss_pred eeEEEEcc-------eeEEecCcCcccCCCCCCCCceeEEEEecCcc
Q 045478 704 AKGMIVDD-------EYVIMGSANINQRSLEGSRDTEIAMGAYQPHY 743 (852)
Q Consensus 704 SKlmIVDD-------~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~ 743 (852)
||+|+||+ .++.||+.|+|......- +++++...+++.
T Consensus 427 ~K~~li~r~~~~~~~~y~~igTgN~n~~ta~~y--~D~~l~t~~~~i 471 (672)
T TIGR03705 427 AKLALVVRREGGELRRYVHLGTGNYHPKTARLY--TDLSLFTADPEI 471 (672)
T ss_pred eEEEEEEEeeCCceEEEEEecCCCCCCcccccc--cceeEEEeChHH
Confidence 99999997 479999999999976655 778887656543
|
Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2. |
| >PF13918 PLDc_3: PLD-like domain | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00078 Score=66.59 Aligned_cols=57 Identities=23% Similarity=0.365 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhh-hcCCeEEEEE
Q 045478 241 CWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKS-QEGVRVLLLI 303 (852)
Q Consensus 241 ~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a-~~GV~VriLv 303 (852)
-.++|+..|++|+++|||+.....|-+. ...+.+.| ..|.++|++|| +|||+||+|+
T Consensus 83 DldAIl~~I~~A~~fI~IsVMdY~P~~~-~~~~~~YW-----P~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 83 DLDAILSVIDSAKKFIYISVMDYLPTSR-YSKPNRYW-----PVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred HHHHHHHHHHhHhheEEEEEeecCCeee-cCCCCCcc-----hhHHHHHHHHHHHcCCeEEEEE
Confidence 3689999999999999999988888432 22232233 48999999887 8999999998
|
|
| >PLN02866 phospholipase D | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00068 Score=82.62 Aligned_cols=62 Identities=19% Similarity=0.303 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEec
Q 045478 545 KSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIP 613 (852)
Q Consensus 545 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP 613 (852)
.....+++++|.+||++|||+.=.|-+..+.+.+.. . .++..+...|.++ +.+||+|+||+=
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~----D-~~g~RL~~lL~rK--AkrGVkVrVLLy 404 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFH----D-HESSRLDSLLEAK--AKQGVQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCC----C-chHHHHHHHHHHH--HHCCCEEEEEEE
Confidence 567889999999999999996544332221111000 0 1245666666665 567899999853
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00044 Score=81.77 Aligned_cols=85 Identities=12% Similarity=0.262 Sum_probs=67.7
Q ss_pred CCcEEEEEECCeeEEEeeeecCCCCCeeeeEEEEeecCCCceE-EEEEEecCCCC-CceeeeEeeeceeccCCCcee--e
Q 045478 78 SNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNL-EFHVKDNDILG-AELIGVVQIPVEKILCGNEVD--D 153 (852)
Q Consensus 78 sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~f~~~~~~~~~~l-~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~--~ 153 (852)
.|+|..+-.-+.+++||.+.++|.||+|||...|.+....... .|.|+|.+.++ ++++|.+.+++.++...+..+ .
T Consensus 68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elke 147 (644)
T PLN02964 68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACE 147 (644)
T ss_pred CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHH
Confidence 5887776665666699999999999999999999887655444 99999999988 999999999988887554322 2
Q ss_pred eeeeccCCC
Q 045478 154 WFPIAGSYG 162 (852)
Q Consensus 154 w~~L~~~~g 162 (852)
-|.++++++
T Consensus 148 aF~lfD~dg 156 (644)
T PLN02964 148 SFDLLDPSS 156 (644)
T ss_pred HHHHHCCCC
Confidence 377777665
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00051 Score=82.66 Aligned_cols=104 Identities=24% Similarity=0.378 Sum_probs=82.5
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecC
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISN 99 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~ 99 (852)
+-.|+|.|-|.-||+|+-..-.. ..||||+.++-. ....||+++.+
T Consensus 1521 Y~~~~LtImV~H~K~L~~Lqdg~------------------------------~P~pyVK~YLlPdp~k~sKRKTKvvrk 1570 (1639)
T KOG0905|consen 1521 YNNGTLTIMVMHAKGLALLQDGQ------------------------------DPDPYVKTYLLPDPRKTSKRKTKVVRK 1570 (1639)
T ss_pred EcCceEEEEhhhhcccccccCCC------------------------------CCCcceeEEecCCchHhhhhhhccccc
Confidence 34799999999999995322111 179999999853 24479999999
Q ss_pred CCCCeeeeEEEEe-ec--C-CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 100 CENPFWDEHFCVP-VA--H-SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 100 s~nP~WnE~f~~~-~~--~-~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
+.||.+||..... .. . ..+++.++|+..+.+. ..++|.+.|||.++...++..+||.|
T Consensus 1571 t~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1571 TRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred cCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 9999999988765 21 1 3467899999988777 89999999999998877767799998
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0036 Score=71.04 Aligned_cols=98 Identities=20% Similarity=0.340 Sum_probs=79.4
Q ss_pred EEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC------eeEEEeeeecCCCC
Q 045478 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG------ATVAQTRVISNCEN 102 (852)
Q Consensus 29 L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~------~~~~rT~vi~~s~n 102 (852)
+.|+|+.|.+|.=.. .+. -.|||.|.+-+ .+...|+...|+-.
T Consensus 1127 vtvkvvaandlkwqt-sgm------------------------------FrPFVEV~ivGP~lsDKKRK~~TKtKsnnWa 1175 (1283)
T KOG1011|consen 1127 VTVKVVAANDLKWQT-SGM------------------------------FRPFVEVHIVGPHLSDKKRKFSTKTKSNNWA 1175 (1283)
T ss_pred EEEEEEecccccchh-ccc------------------------------cccceEEEEecCcccchhhhccccccCCCcC
Confidence 889999999886221 111 47999999743 35678999999999
Q ss_pred CeeeeEEEEeecCC----CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 103 PFWDEHFCVPVAHS----VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 103 P~WnE~f~~~~~~~----~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
|.+||+|+|.+... .-++.|.|+|..--. |.++|.+.+++.++......-.|++|
T Consensus 1176 PKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pL 1235 (1283)
T KOG1011|consen 1176 PKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPL 1235 (1283)
T ss_pred cccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeec
Confidence 99999999998753 356799999988766 88999999999999977777789999
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.00077 Score=71.51 Aligned_cols=150 Identities=21% Similarity=0.178 Sum_probs=100.9
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCCC
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCEN 102 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~n 102 (852)
..|+++|..|++|..|+..+. -|||+...+.. ....||++..|+.|
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~------------------------------~d~~~~~~llpga~kl~slr~~t~~n~lN 142 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGL------------------------------ADPYVKLHLLPGAGKLNSLRTKTTRNTLN 142 (362)
T ss_pred hhcceeechhcccchhhhhhh------------------------------cchHHhhhcccchhhhhhhhHHhhccCcC
Confidence 458899999999999998887 89999998753 23378999999999
Q ss_pred CeeeeEEEEeec--CC--CceEEEEEEecCCCC-CceeeeEeeeceeccCCC--ceeeeeeeccCCC----CCCCCCCEE
Q 045478 103 PFWDEHFCVPVA--HS--VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGN--EVDDWFPIAGSYG----KNLKPFPQL 171 (852)
Q Consensus 103 P~WnE~f~~~~~--~~--~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~--~~~~w~~L~~~~g----~~~k~~g~l 171 (852)
|.|+|......- .+ ...+.+.|.|++.+. ++++|+..+++..+.+.+ ....||.-..+.+ ......|.|
T Consensus 143 ~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i 222 (362)
T KOG1013|consen 143 PEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAI 222 (362)
T ss_pred cceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccce
Confidence 999987765532 22 233467788888877 899999999998887533 2233443322211 113567889
Q ss_pred EEEEEeeecCCcc--cccC-CCCCCCCCCCCCccCccc
Q 045478 172 HVSMQYKPIGQIP--LYKD-GVGAGPDYQGVPKTYFPL 206 (852)
Q Consensus 172 ~l~l~f~~~~~~~--~~~~-gv~~~~~~~g~~~~~~p~ 206 (852)
.+++.|....... .|.. +.....+..|..+.|...
T Consensus 223 ~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~ 260 (362)
T KOG1013|consen 223 LISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQ 260 (362)
T ss_pred eeeeccCcCCCceEEEEEEeeeeeccccCCCCCcccee
Confidence 9999988765432 2333 333334555544444443
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.00083 Score=80.10 Aligned_cols=87 Identities=26% Similarity=0.350 Sum_probs=75.8
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeE-EEeeeecCCCCCeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATV-AQTRVISNCENPFWD 106 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~-~rT~vi~~s~nP~Wn 106 (852)
.++|.|++|-+|...|..+. .|||+.+.+++... -++..+.+++||+++
T Consensus 614 LvrVyvv~A~~L~p~D~ng~------------------------------adpYv~l~lGk~~~~d~~~yip~tlnPVfg 663 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGD------------------------------ADPYVKLLLGKKRTLDRAHYIPNTLNPVFG 663 (1105)
T ss_pred eEEEEEEEeeeccccCCCCC------------------------------cCceeeeeeccchhhhhhhcCcCCCCcHHH
Confidence 36799999999999998887 89999999998753 477888999999999
Q ss_pred eEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeecee
Q 045478 107 EHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEK 144 (852)
Q Consensus 107 E~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~ 144 (852)
+.|.+.+.-+. ..+.+.|+|.|.++ |+.||...|.++.
T Consensus 664 kmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 664 KMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred HHHHhhcccchhhcceeEEEEeecccccchhhceehhhhh
Confidence 99999887664 55699999999998 9999999998863
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0022 Score=68.11 Aligned_cols=100 Identities=25% Similarity=0.254 Sum_probs=78.0
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~vi~~s~ 101 (852)
..-|.|++.++..|..+|..+. +||||.+.+... -..+|.+.+++.
T Consensus 232 ~~~l~vt~iRc~~l~ssDsng~------------------------------sDpyvS~~l~pdv~~~fkkKt~~~K~t~ 281 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDSNGY------------------------------SDPYVSQRLSPDVGKKFKKKTQQKKKTL 281 (362)
T ss_pred CCceEEEEEEeeeeeccccCCC------------------------------CCccceeecCCCcchhhcccCcchhccC
Confidence 4558999999999999998877 999999998632 246899999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeee
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
+|+++++|.+.+.+. ...+.+.|+|.+.-+ .+++|-+..-.. ..++...+|+..
T Consensus 282 ~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~--rr~~v~~h~gr~ 339 (362)
T KOG1013|consen 282 NPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY--RRGEVHKHWGRC 339 (362)
T ss_pred CccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc--ccchhhcCcccc
Confidence 999999999988764 245789999998875 888988655433 344555566543
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0021 Score=69.48 Aligned_cols=108 Identities=21% Similarity=0.342 Sum_probs=84.7
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~vi~~s~ 101 (852)
.|.|+|.|++|++|......+. .++|||+|++-.. ...+|+...++.
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~-----------------------------~~apyVkVYlL~~g~c~ak~ktk~A~kT~ 318 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKS-----------------------------LPAPYVKVYLLENGFCIAKKKTKSARKTL 318 (405)
T ss_pred cCceeEEEEecccccccCCccc-----------------------------ccCceeEEEEcCCCceecccccccccccC
Confidence 5889999999999975432211 1799999998532 336899999999
Q ss_pred CCeeeeEEEEeecCCCceEEEEEEe-cCCCC-CceeeeEeeeceeccCCC-ceeeeeeeccCCC
Q 045478 102 NPFWDEHFCVPVAHSVVNLEFHVKD-NDILG-AELIGVVQIPVEKILCGN-EVDDWFPIAGSYG 162 (852)
Q Consensus 102 nP~WnE~f~~~~~~~~~~l~~~V~d-~d~~~-~~~iG~~~i~l~~l~~g~-~~~~w~~L~~~~g 162 (852)
.|.+-+...|.-..+...+.++||- ...+. +.|+|.++|-+++|-.+. .+-+||+|+....
T Consensus 319 ~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsss 382 (405)
T KOG2060|consen 319 DPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSS 382 (405)
T ss_pred chhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCcc
Confidence 9988888888877778888888885 44555 789999999999998766 7889999976544
|
|
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.01 Score=70.95 Aligned_cols=145 Identities=17% Similarity=0.093 Sum_probs=71.8
Q ss_pred CcccchhhhHHHHHHHHHhccceEEEEE-eecccceeEecCCCCCCCCCCcchHHHHHHHhhh--cCCeEEEEEeCCCcc
Q 045478 233 GKTFRHGQCWEEICHAVLEARHLIYIIG-WSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQ--EGVRVLLLIWDDKTS 309 (852)
Q Consensus 233 g~~y~~~~~~~~l~~aI~~Ak~~I~I~~-w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~--~GV~VriLvwD~~~s 309 (852)
|-....+..-.+.+++|++|+|.|||+- |.+..... .... . ...+..|.+-+.+|-+ +--+|+|++
T Consensus 559 g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~-~~~~---~-n~v~~ela~rIv~a~ra~e~frVYIVI------ 627 (887)
T KOG1329|consen 559 GINEIEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFN-WDSV---L-NKVGDELALRIVKAIRAGEKFRVYIVI------ 627 (887)
T ss_pred CCCchHHHHHHHHHHHHHhccceEEEeeeeEEeeccC-CCcc---c-chHHHHHHHHHHHHHhcCCceEEEEEE------
Confidence 3334334567788999999999999983 22211100 0000 0 0112344444444434 457888887
Q ss_pred ccccccccccc----------------ccCCcHHHHhhhcCCCCEEEecCCC--CCCcchhh---hhccccccccCccce
Q 045478 310 HDNLFIKTEGV----------------MQTHDEETRKFFKHSSVNCVLAPRY--ASNKLSIF---KQQVVGTLFTHHQKC 368 (852)
Q Consensus 310 ~~~~~~~~~~~----------------~~~~~~~~~~~l~~~gv~v~~~~~~--~~~~~~~~---~~~~~~~~~~hHqK~ 368 (852)
...|++...+. |........+.|+..|+.= ..+.. ....+..+ .+...+.+--=|.|+
T Consensus 628 PL~PgfEG~~~p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~-~~yi~f~~lr~~g~~e~~~~~~~~emIYVHsK~ 706 (887)
T KOG1329|consen 628 PLWPGFEGDDTPGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDP-ADYIDFLGLRCLGNREEQAQRLRREMIYVHSKL 706 (887)
T ss_pred eCCccccCCCCCCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCc-cccceeeeeeeeeccccccccceEEEEEEeeee
Confidence 12233322101 1111234455666666551 00000 00000000 011111222349999
Q ss_pred EEecCCCCCCCCceEEEEcccCCCCCccC
Q 045478 369 VIVDTPASGNNRKISAFIGGLDLCDGRYD 397 (852)
Q Consensus 369 vVVD~~~~~~~~~~vAfvGG~nl~~~r~D 397 (852)
+|||++ .+.+|+.||.+.-.+
T Consensus 707 mIvDD~--------~vIIGSANINqRSm~ 727 (887)
T KOG1329|consen 707 MIVDDE--------YVIIGSANINQRSML 727 (887)
T ss_pred EEecCC--------EEEEeecccchhhcc
Confidence 999999 999999999994443
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0017 Score=77.58 Aligned_cols=100 Identities=25% Similarity=0.311 Sum_probs=76.4
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
=-|++.|++|+.|..++..+. +|||+.|..-+.. ..|-++.+++||.|+
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~------------------------------sdp~a~v~f~~qs-~~T~~v~~tl~ptwd 254 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDE------------------------------SDPDAAVEFCGQS-KETEVVPGTLNPTWD 254 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccC------------------------------CCchhhhhccccc-ceeEeecCcCCCCcc
Confidence 337777888888888777666 9999999987766 689999999999999
Q ss_pred eEEEEeec----------CCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 107 EHFCVPVA----------HSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 107 E~f~~~~~----------~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
+...|.-. .....++|+|+|.+..+ ++++|+......-... .+.-.|+++.
T Consensus 255 q~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~ 316 (1105)
T KOG1326|consen 255 QTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTM 316 (1105)
T ss_pred ceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEee
Confidence 99888621 12345699999999999 9999997664332222 3456799985
|
|
| >PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.031 Score=58.85 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeC
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWD 305 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD 305 (852)
+...+.+.+.|++|+++|+|..|. ..-..|.+.|++|.+|||+|.++++.
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~-----------------~~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPP-----------------EFLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-G-----------------GGHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCH-----------------HHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 577899999999999999999883 11258999999999999999999955
|
The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X. |
| >PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.018 Score=61.23 Aligned_cols=130 Identities=17% Similarity=0.189 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchh
Q 045478 545 KSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAA 624 (852)
Q Consensus 545 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~ 624 (852)
.+|.+..-++|++|++-|=|..=-|+. .+|..-|..|. .+|+|-|||++.. ..
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD------------------~dIf~DLleAa-~kR~VpVYiLLD~--------~~ 185 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTD------------------VDIFCDLLEAA-NKRGVPVYILLDE--------QN 185 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeecccc------------------HHHHHHHHHHH-HhcCCcEEEEech--------hc
Confidence 578999999999999999999998972 34445555552 2588999999974 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEe
Q 045478 625 VQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHA 704 (852)
Q Consensus 625 ~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHS 704 (852)
++.++. | -.+.++..... ..+++-.++ +..|.... .+.+..-+|.
T Consensus 186 ~~~Fl~-----M----------c~~~~v~~~~~--~nmrVRsv~-----G~~y~~rs-------------g~k~~G~~~e 230 (284)
T PF07894_consen 186 LPHFLE-----M----------CEKLGVNLQHL--KNMRVRSVT-----GCTYYSRS-------------GKKFKGQLKE 230 (284)
T ss_pred ChHHHH-----H----------HHHCCCChhhc--CCeEEEEec-----CCeeecCC-------------CCeeeCcccc
Confidence 332222 2 22334432111 123332221 11122100 1123468999
Q ss_pred eEEEEcceeEEecCcCcccCCCCCCCCceeEEEE
Q 045478 705 KGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGA 738 (852)
Q Consensus 705 KlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i 738 (852)
|+||||.+.++.||--+..-|-..+ .-+...+
T Consensus 231 KF~lvD~~~V~~GSYSFtWs~~~~~--r~~~~~~ 262 (284)
T PF07894_consen 231 KFMLVDGDKVISGSYSFTWSSSRVH--RNLVTVL 262 (284)
T ss_pred eeEEEecccccccccceeecccccc--cceeEEE
Confidence 9999999999999999998888755 4444444
|
Some members of this family are annotated as being potential phospholipases but no literature was found to support this. |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.022 Score=68.34 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCC-CCCCCCCcchHHHHHHHhhh--cCCeEEEEE
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPT-KPLPSFGELSFGELLKHKSQ--EGVRVLLLI 303 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~-~~~~~~~~~~l~~~L~~~a~--~GV~VriLv 303 (852)
.....+.++||++|||+|||+.=-|-...+.+..+. .....-.+..|.+.|.+|.+ ++-+|+|++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 568899999999999999998321211111111110 00000123467777777754 578888887
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.013 Score=63.89 Aligned_cols=98 Identities=17% Similarity=0.267 Sum_probs=75.6
Q ss_pred CCcEEEEEEC----CeeEEEeeeecCCCCCeeeeEEEEeecCC---C---------ceEEEEEEecCCCC--CceeeeEe
Q 045478 78 SNPYVSVCLS----GATVAQTRVISNCENPFWDEHFCVPVAHS---V---------VNLEFHVKDNDILG--AELIGVVQ 139 (852)
Q Consensus 78 sdpYv~v~l~----~~~~~rT~vi~~s~nP~WnE~f~~~~~~~---~---------~~l~~~V~d~d~~~--~~~iG~~~ 139 (852)
-|-|+.+.+. .....+|.+++++.+|.++|.|.+.+... . ..+.|+++.+..+- |.++|.+.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 4567776652 23347999999999999999999987651 1 23689999987764 89999999
Q ss_pred eeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 140 IPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 140 i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
+.++.|...-+++..++|.+.+. ..+|+|.++++.-
T Consensus 468 ikle~Len~cei~e~~~l~DGRK---~vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKDGRK---AVGGKLEVKVRIR 503 (523)
T ss_pred eeehhhhcccchhhceecccccc---ccCCeeEEEEEEe
Confidence 99999987778888999975433 4578888887753
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.025 Score=64.83 Aligned_cols=85 Identities=26% Similarity=0.445 Sum_probs=66.4
Q ss_pred EEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC---C--eeEEEeeeecCCCCCeee
Q 045478 32 SILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS---G--ATVAQTRVISNCENPFWD 106 (852)
Q Consensus 32 ~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~---~--~~~~rT~vi~~s~nP~Wn 106 (852)
-.++|++|.++|.+++ +|||..+.-- + .-+.||.++.++++|.|.
T Consensus 141 ~~~~~~~ld~kd~f~k------------------------------sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~ 190 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSK------------------------------SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA 190 (529)
T ss_pred eeeeeeecCccccccc------------------------------CCcceEEEEecCCCceeeccccceeccCCCCccc
Confidence 3456788888888877 9999987742 2 256899999999999995
Q ss_pred eEEEEeecC-----CCceEEEEEEecCCCC-CceeeeEeeeceeccC
Q 045478 107 EHFCVPVAH-----SVVNLEFHVKDNDILG-AELIGVVQIPVEKILC 147 (852)
Q Consensus 107 E~f~~~~~~-----~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~ 147 (852)
+ |.++... ....+.+.++|.+.-+ +++||++..++.++..
T Consensus 191 ~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 191 P-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred c-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 4 5555332 3466789999999988 6999999999988864
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.084 Score=62.76 Aligned_cols=101 Identities=21% Similarity=0.380 Sum_probs=76.0
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC---e---eEEEeeee
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG---A---TVAQTRVI 97 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~---~---~~~rT~vi 97 (852)
.+-++|.|+|+++.-|..++ ...||.|.+=+ . +..||+++
T Consensus 700 vIA~t~sV~VISgqFLSdrk----------------------------------vgtyVEVdmfgLP~Dt~Rk~~rtrt~ 745 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRK----------------------------------VGTYVEVDMFGLPTDTIRKEFRTRTV 745 (1189)
T ss_pred eEEeeEEEEEEeeeeccccc----------------------------------cCceEEEEecCCCchhhhhhhhhccc
Confidence 46789999999999887653 46799999743 1 34688877
Q ss_pred c-CCCCCeeee-EEEEe--ecCCCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 98 S-NCENPFWDE-HFCVP--VAHSVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 98 ~-~s~nP~WnE-~f~~~--~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
. |+.||+|+| .|.|. +-+....+.|.|++++ ..+||.-.+|+.-|..|. +...|-++.+.|
T Consensus 746 ~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg---gK~ig~RIlpvd~l~~GY---rhv~LRse~Nqp 810 (1189)
T KOG1265|consen 746 QGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG---GKFIGQRILPVDGLNAGY---RHVCLRSESNQP 810 (1189)
T ss_pred cCCCCCcccccCCcccceecccchhheeeeeeccC---CceeeeeccchhcccCcc---eeEEecCCCCCc
Confidence 6 599999995 57775 3445567789998864 569999999999999886 346665555655
|
|
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.038 Score=66.59 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=40.2
Q ss_pred ecCCcccch-hhhHHHHHHHHHhccceEEEEE-eecccceeEecCCC-CCCCCCCcchHHHHHHHhh--hcCCeEEEEE
Q 045478 230 LDGGKTFRH-GQCWEEICHAVLEARHLIYIIG-WSVFHPVKLVREPT-KPLPSFGELSFGELLKHKS--QEGVRVLLLI 303 (852)
Q Consensus 230 l~~g~~y~~-~~~~~~l~~aI~~Ak~~I~I~~-w~~~~~~~l~r~~~-~~~~~~~~~~l~~~L~~~a--~~GV~VriLv 303 (852)
|+.|+...- ..+..+.+++|++|||.|||+. |.+.. .+.+.... .......+..|...|.+|. .++-+|+|++
T Consensus 556 l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss-~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 556 LECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGS-SYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred cccccccchhhhHHHHHHHHHHhhccEEEEehhhhhcc-ccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 344444333 3457889999999999999983 22221 11110000 0000012345666666664 4688999887
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.56 Score=45.14 Aligned_cols=120 Identities=20% Similarity=0.300 Sum_probs=81.2
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCee--EEEeeeec-CCCCCe
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGAT--VAQTRVIS-NCENPF 104 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~--~~rT~vi~-~s~nP~ 104 (852)
.+.++|++..+++..+ ...||....+... .+.|.... ....-.
T Consensus 8 ~~~l~i~~l~~~p~~~----------------------------------~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~ 53 (143)
T PF10358_consen 8 QFDLTIHELENLPSSN----------------------------------GKVFVKWKRGDKSKGSGTTSRANVKNGKVQ 53 (143)
T ss_pred EEEEEEEEeECcCCCC----------------------------------CEEEEEEEECCCCccceeeeeeeccccEEE
Confidence 4678899998888511 2345555555443 34554433 355689
Q ss_pred eeeEEEEeecC---------CCceEEEEEEecCCCCC-ceeeeEeeeceeccCC--CceeeeeeeccCCCCCCCCCCEEE
Q 045478 105 WDEHFCVPVAH---------SVVNLEFHVKDNDILGA-ELIGVVQIPVEKILCG--NEVDDWFPIAGSYGKNLKPFPQLH 172 (852)
Q Consensus 105 WnE~f~~~~~~---------~~~~l~~~V~d~d~~~~-~~iG~~~i~l~~l~~g--~~~~~w~~L~~~~g~~~k~~g~l~ 172 (852)
|||.|.+.+.- ....+.|.|+.....+. ..+|.+.|.|.+...- .....-++|... .+..+.|+
T Consensus 54 w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~ 129 (143)
T PF10358_consen 54 WNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLS 129 (143)
T ss_pred EeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEE
Confidence 99999988642 12346888888754443 5999999999999863 455666776432 25678999
Q ss_pred EEEEeeecCCccc
Q 045478 173 VSMQYKPIGQIPL 185 (852)
Q Consensus 173 l~l~f~~~~~~~~ 185 (852)
++|++.++...+.
T Consensus 130 isi~~~~~~~~~~ 142 (143)
T PF10358_consen 130 ISISLSELREDPD 142 (143)
T ss_pred EEEEEEECccCCC
Confidence 9999998876654
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.02 Score=49.56 Aligned_cols=70 Identities=16% Similarity=0.297 Sum_probs=53.2
Q ss_pred EEECCeeEEEeeeecCCCCCeeeeEEEEeecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeee
Q 045478 84 VCLSGATVAQTRVISNCENPFWDEHFCVPVAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFP 156 (852)
Q Consensus 84 v~l~~~~~~rT~vi~~s~nP~WnE~f~~~~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~ 156 (852)
+.+......||.+...+.||+++|+|.|.++- +...+.|.|.. ... .+.||.+.+.+.++- .++.++|..
T Consensus 29 ~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~g-eeE~~HW~e 102 (103)
T cd08684 29 LTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTLS-TQETDHWLE 102 (103)
T ss_pred EecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccceeeEEEeecccCC-HHHhhhhhc
Confidence 44566666899999999999999999999775 23445777776 333 789999999998774 345677865
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.081 Score=63.81 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHhccceEEEEE-eecccceeEec-CCCCCCCCC----CcchHHHHHHHhh--hcCCeEEEEE
Q 045478 239 GQCWEEICHAVLEARHLIYIIG-WSVFHPVKLVR-EPTKPLPSF----GELSFGELLKHKS--QEGVRVLLLI 303 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~-w~~~~~~~l~r-~~~~~~~~~----~~~~l~~~L~~~a--~~GV~VriLv 303 (852)
.....+.++||++|+++|||+. |.+...+ -.. ++-++...+ .+..|...|.+|. .++-+|+|++
T Consensus 498 rsI~~aYi~AI~~A~~~IYIENQYF~sss~-~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi 569 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIENQYFLGSSF-AWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV 569 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeehhhhhhhhh-hhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 5688899999999999999983 3222211 110 000000001 1245556666654 4689999987
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.51 Score=52.17 Aligned_cols=104 Identities=17% Similarity=0.263 Sum_probs=77.3
Q ss_pred CCcEEEEEECCeeEEEeeeecCCCCCeeeeEEEEeecC--------CCceEEEEEEecC-CCC-CceeeeEeeeceec--
Q 045478 78 SNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAH--------SVVNLEFHVKDND-ILG-AELIGVVQIPVEKI-- 145 (852)
Q Consensus 78 sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~f~~~~~~--------~~~~l~~~V~d~d-~~~-~~~iG~~~i~l~~l-- 145 (852)
..-.+..++++.. ..|-.+..+..|.||....+.+.. ....|+++++.-+ ..+ .+.||-+.++|..+
T Consensus 18 ~~~vv~a~~ng~~-l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~ 96 (340)
T PF12416_consen 18 HPIVVEAKFNGES-LETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVV 96 (340)
T ss_pred ccEEEEEEeCCce-eeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccccc
Confidence 4557778888877 678888889999999999998753 2355788888877 334 78999999999988
Q ss_pred -cCC--CceeeeeeeccCCCCCCCCCCEEEEEEEeeecCC
Q 045478 146 -LCG--NEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQ 182 (852)
Q Consensus 146 -~~g--~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~~~ 182 (852)
..+ .....||+|++.+++-.+...+|.+.+.......
T Consensus 97 ~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 97 PQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred ccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 655 4567899999885544345566776666655443
|
|
| >COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.34 E-value=6.6 Score=46.30 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHhccc-----eEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccc
Q 045478 239 GQCWEEICHAVLEARH-----LIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNL 313 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~ 313 (852)
=+.|+.+.+.|++|-. .|-++-|.. +....|.++|.+||+.|-+|-+|| .-. .
T Consensus 351 YeSF~~Vv~fl~qAA~DP~VLAIKqTLYRt----------------~~dSpIV~ALi~AA~nGKqVtvlV-ELk-----A 408 (696)
T COG0855 351 YESFEPVVEFLRQAAADPDVLAIKQTLYRT----------------SKDSPIVRALIDAAENGKQVTVLV-ELK-----A 408 (696)
T ss_pred hhhhHHHHHHHHHhhcCCCeEEEEEEEEec----------------CCCCHHHHHHHHHHHcCCeEEEEE-EEh-----h
Confidence 4678899999999964 444454432 223699999999999999999998 321 1
Q ss_pred cccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCC
Q 045478 314 FIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTP 374 (852)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~ 374 (852)
.+. ...+-.+.+.|+.+||+|++-- + -+--|.|+++|=-+
T Consensus 409 RFD-----EE~NI~WAk~LE~AGvhVvyG~--~--------------glKtHAKm~lVvRr 448 (696)
T COG0855 409 RFD-----EEANIHWAKRLERAGVHVVYGV--V--------------GLKTHAKMLLVVRR 448 (696)
T ss_pred hcC-----hhhhhHHHHHHHhCCcEEEecc--c--------------ceeeeeeEEEEEEe
Confidence 000 0001235677899999998521 1 13569999988443
|
|
| >COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.4 Score=43.92 Aligned_cols=140 Identities=19% Similarity=0.273 Sum_probs=92.9
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
+.....+...|+.|++...+..|+-. ++-.-+.+.|..+..+||++|||- ++.-+.
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit~---------------sG~sll~~~L~d~~~Kgvkgkilt-s~Ylnf-------- 93 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFITE---------------SGLSLLFDLLLDLVNKGVKGKILT-SDYLNF-------- 93 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEeeC---------------ccHHHHHHHHHHHhcCCceEEEec-ccccCc--------
Confidence 57789999999999999888877532 123578899999999999999996 443111
Q ss_pred ccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCC
Q 045478 319 GVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDT 398 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt 398 (852)
+.....++.+.-.+|+|+++.- + ...+|-|-.+.-.. ....|++|+.||+++-...
T Consensus 94 ----TdP~al~~Ll~~~nve~r~~~~-~--------------~~~fH~KgYiFe~~-----~~~taiiGSsNlt~sALt~ 149 (198)
T COG3886 94 ----TDPVALRKLLMLKNVELRVSTI-G--------------SANFHTKGYIFEHN-----TGITAIIGSSNLTDSALTV 149 (198)
T ss_pred ----cCHHHHHHHHhhhccceEEEec-C--------------ccccccceeEEEec-----ceEEEEEccchhhhhhccc
Confidence 1122344455555688876431 1 13567777765332 1138999999999844321
Q ss_pred CCcCCCCCCcccccCCCCCCCCCCCCCCCCCcee-eceeeeeChHHHHHHHHHHHHHh
Q 045478 399 PEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWH-DMHCKVEGPAAYDILINFEQRWR 455 (852)
Q Consensus 399 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWh-Dv~~~v~Gpaa~dl~~~F~~rW~ 455 (852)
. ..|- -+...-.|-.|..+...|+..|.
T Consensus 150 -n----------------------------~Ewn~k~s~~~~g~i~~~~k~~f~r~~~ 178 (198)
T COG3886 150 -N----------------------------EEWNLKVSSSKNGDIVKEVKVTFERQFQ 178 (198)
T ss_pred -C----------------------------HHHHhhhccccccchHHHHHHHHHHHHH
Confidence 1 1221 12334467889999999999997
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.95 E-value=1.8 Score=42.64 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=57.2
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEE--CCeeE---EEeeeecC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCL--SGATV---AQTRVISN 99 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l--~~~~~---~rT~vi~~ 99 (852)
++..+.|+|+++.++.-.+ . ++.||++.+ ++... ..|+.+..
T Consensus 6 ~~~~~~v~i~~~~~~~~~~---~------------------------------~~l~V~v~l~~g~~~L~~pv~T~~v~~ 52 (158)
T cd08398 6 INSNLRIKILCATYVNVND---I------------------------------DKIYVRTGIYHGGEPLCDNVNTQRVPC 52 (158)
T ss_pred CCCCeEEEEEeeccCCCCC---c------------------------------CeEEEEEEEEECCEEccCeeEecccCC
Confidence 4677999999999886321 1 678888865 44322 24444443
Q ss_pred CCCCeeeeEEEEeecC----CCceEEEEEEecCCCC-----CceeeeEeeecee
Q 045478 100 CENPFWDEHFCVPVAH----SVVNLEFHVKDNDILG-----AELIGVVQIPVEK 144 (852)
Q Consensus 100 s~nP~WnE~f~~~~~~----~~~~l~~~V~d~d~~~-----~~~iG~~~i~l~~ 144 (852)
.++.|||-..|++.- ..+.+.|+|++....+ ...||.+.+++-+
T Consensus 53 -~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 53 -SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred -CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence 689999998887543 3467899999854311 2468888777755
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=90.71 E-value=1.7 Score=38.25 Aligned_cols=84 Identities=21% Similarity=0.225 Sum_probs=62.5
Q ss_pred CCcEEEEEECCeeEEEeeeecCCCCCeeeeEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeee
Q 045478 78 SNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 78 sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
++-.+++.+++..|+.|.-.. ..+..|++.|+|.+. ...++++.|+=.|- .++.|...+.+++...+ .-++
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~--RslCav~~lrLEd~~~~----~~~~- 79 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELE-RSRELEIAVYWRDW--RSLCAVKFLKLEDERHE----VQLD- 79 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEee-cccEEEEEEEEecc--hhhhhheeeEhhhhccc----ceec-
Confidence 688999999999999998654 357899999999986 56788888876543 45788888888884322 1222
Q ss_pred ccCCCCCCCCCCEEEEEEEe
Q 045478 158 AGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 158 ~~~~g~~~k~~g~l~l~l~f 177 (852)
..++|.+...+.|
T Consensus 80 -------lepqg~l~~ev~f 92 (98)
T cd08687 80 -------MEPQLCLVAELTF 92 (98)
T ss_pred -------cccccEEEEEEEe
Confidence 2567788888777
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B | Back alignment and domain information |
|---|
Probab=87.87 E-value=2 Score=47.11 Aligned_cols=137 Identities=16% Similarity=0.211 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHhcc-----ceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccc
Q 045478 240 QCWEEICHAVLEAR-----HLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLF 314 (852)
Q Consensus 240 ~~~~~l~~aI~~Ak-----~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~ 314 (852)
+.|+.+++.|++|- .+|-|+-|.+.. ...|.++|.+||+.|-+|.++| .-...+.
T Consensus 18 ~sf~~vv~fl~eAA~DP~V~aIk~TLYR~a~----------------~S~iv~aLi~AA~nGK~Vtv~v-ELkARFD--- 77 (352)
T PF13090_consen 18 ESFDPVVDFLREAAEDPDVLAIKITLYRVAS----------------NSPIVNALIEAAENGKQVTVLV-ELKARFD--- 77 (352)
T ss_dssp B-TCHHHHHHHHHCC-TTEEEEEEEESSS-T----------------T-HHHHHHHHHHHTT-EEEEEE-STTSSST---
T ss_pred cccHHHHHHHHHHhcCCCccEEEEEEEecCC----------------CCHHHHHHHHHHHcCCEEEEEE-EEecccc---
Confidence 45777888888884 578888886532 3699999999999999999998 4321110
Q ss_pred ccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCC
Q 045478 315 IKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDG 394 (852)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~ 394 (852)
.-. +-.+.+.|+.+||+|.+- .++ +--|.|+++|=-+..+ .-+..+++|-=|...
T Consensus 78 ----Ee~---Ni~Wa~~Le~aGv~ViyG--~~g--------------lKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe- 132 (352)
T PF13090_consen 78 ----EEN---NIHWAKRLEEAGVHVIYG--VPG--------------LKVHAKICLIVRREGG-GLRRYAHLGTGNYNE- 132 (352)
T ss_dssp ----TCC---CCCCCHHHHHCT-EEEE----TT---------------EE--EEEEEEEEETT-EEEEEEEEESS-SST-
T ss_pred ----HHH---HhHHHhhHHhcCeEEEcC--CCC--------------hhheeeEEEEEEEeCC-cEEEEEEEcCCCcCc-
Confidence 000 112456788999999852 121 2459999998544222 122367777655433
Q ss_pred ccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh-HHHHHHHHHHH
Q 045478 395 RYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP-AAYDILINFEQ 452 (852)
Q Consensus 395 r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp-aa~dl~~~F~~ 452 (852)
. +. .-+-|+++.-.-| .+.|+...|..
T Consensus 133 ------------------------~------TA-r~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 133 ------------------------K------TA-RIYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp ------------------------T------HC-CCEEEEEEEE--HHHHHHHHHHHHH
T ss_pred ------------------------c------ch-hheecceeecCCHHHHHHHHHHHHH
Confidence 0 01 2456888877776 68899999843
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=87.70 E-value=4.9 Score=39.27 Aligned_cols=103 Identities=16% Similarity=0.226 Sum_probs=66.9
Q ss_pred CCcEEEEEECCeeEEEeeeecCCCCCeeeeEEEEeecCCC--------------ceEEEEEEecCCCC-CceeeeEeeec
Q 045478 78 SNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSV--------------VNLEFHVKDNDILG-AELIGVVQIPV 142 (852)
Q Consensus 78 sdpYv~v~l~~~~~~rT~vi~~s~nP~WnE~f~~~~~~~~--------------~~l~~~V~d~d~~~-~~~iG~~~i~l 142 (852)
+-.++-+.+.+++ ++|+.+.-+.+|.++|.|-|++.... ..+++.|-.-|..+ ..++|.-.+.=
T Consensus 34 s~~~l~l~f~~QR-F~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldW 112 (156)
T PF15627_consen 34 STFTLHLHFRGQR-FRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDW 112 (156)
T ss_pred eEEEEEEEecCce-EecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehH
Confidence 4445556677888 99999999999999999999986532 23566665555555 57888877776
Q ss_pred eeccCCCce--eeeeeeccCCCCCCCCCCEEEEEEEeeecC
Q 045478 143 EKILCGNEV--DDWFPIAGSYGKNLKPFPQLHVSMQYKPIG 181 (852)
Q Consensus 143 ~~l~~g~~~--~~w~~L~~~~g~~~k~~g~l~l~l~f~~~~ 181 (852)
..+...+.. ..-..|.+.....--+.|.|.+++...|..
T Consensus 113 R~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 113 RKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred HHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 666543322 223344333222112568888888877753
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=87.47 E-value=3.9 Score=40.96 Aligned_cols=72 Identities=17% Similarity=0.337 Sum_probs=48.5
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEE--CCee---EEEeeeecC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCL--SGAT---VAQTRVISN 99 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l--~~~~---~~rT~vi~~ 99 (852)
++..+.|+|+.+.+|.-.+ . .++.||++.+ ++.. ...|+.+.-
T Consensus 6 ~~~~f~i~i~~~~~~~~~~--~------------------------------~~~l~V~~~lyhG~~~L~~p~~T~~~~~ 53 (173)
T cd08693 6 IEEKFSITLHKISNLNAAE--R------------------------------TMKVGVQAGLFHGGESLCKTVKTSEVSG 53 (173)
T ss_pred cCCCEEEEEEEeccCccCC--C------------------------------CceEEEEEEEEECCEEccCceEccccCC
Confidence 4667899999999987411 0 1567888654 4442 235655555
Q ss_pred CCCCeeeeEEEEeecC----CCceEEEEEEecC
Q 045478 100 CENPFWDEHFCVPVAH----SVVNLEFHVKDND 128 (852)
Q Consensus 100 s~nP~WnE~f~~~~~~----~~~~l~~~V~d~d 128 (852)
+.++.|||.+.|++.- ..+.+.|+|++..
T Consensus 54 ~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 54 KNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 6779999998887542 3467789998753
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.06 E-value=1.4 Score=46.99 Aligned_cols=119 Identities=18% Similarity=0.099 Sum_probs=73.7
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
.|.|.+.++++++|+-..... -.+.+.||++..+..-.+||++-+....-.|
T Consensus 50 tGiL~~H~~~GRGLr~~p~~k----------------------------glt~~~ycVle~drqh~aRt~vrs~~~~f~w 101 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQK----------------------------GLTVCFYCVLEPDRQHPARTRVRSSGPGFAW 101 (442)
T ss_pred cceEEEEEecccccccChhcc----------------------------CceeeeeeeeeecccCccccccccCCCCccc
Confidence 688999999999996332111 1236889999999876689999888888899
Q ss_pred eeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeeec
Q 045478 106 DEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPI 180 (852)
Q Consensus 106 nE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~ 180 (852)
.|+|+..+.. ...+.+-|+.++... ..++-..-|.+..+. .+.-++-+.|. ..+.|++.++|.+.+.
T Consensus 102 ~e~F~~Dvv~-~~vl~~lvySW~pq~RHKLC~~g~l~~~~v~-rqspd~~~Al~------lePrgq~~~r~~~~Dp 169 (442)
T KOG1452|consen 102 AEDFKHDVVN-IEVLHYLVYSWPPQRRHKLCHLGLLEAFVVD-RQSPDRVVALY------LEPRGQPPLRLPLADP 169 (442)
T ss_pred hhhceeeccc-ceeeeEEEeecCchhhccccccchhhhhhhh-hcCCcceeeee------cccCCCCceecccCCh
Confidence 9999988753 334566676665433 333322233333332 12222333331 1345667777776653
|
|
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=84.23 E-value=6.6 Score=38.42 Aligned_cols=68 Identities=19% Similarity=0.272 Sum_probs=46.2
Q ss_pred CCcEEEEEE--CCe---eEEEeeeecCCCCCeeeeEEEEeecC----CCceEEEEEEecCCCC---CceeeeEeeeceec
Q 045478 78 SNPYVSVCL--SGA---TVAQTRVISNCENPFWDEHFCVPVAH----SVVNLEFHVKDNDILG---AELIGVVQIPVEKI 145 (852)
Q Consensus 78 sdpYv~v~l--~~~---~~~rT~vi~~s~nP~WnE~f~~~~~~----~~~~l~~~V~d~d~~~---~~~iG~~~i~l~~l 145 (852)
++.||++.+ ++. .+..|+....+.++.|||...|++.- ..+.+.|+|++.+..+ ...||.+.+++-+-
T Consensus 28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 567777765 443 22344444444789999998887542 3467899999865433 57999999998764
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV | Back alignment and domain information |
|---|
Probab=83.95 E-value=8.8 Score=41.73 Aligned_cols=40 Identities=33% Similarity=0.332 Sum_probs=28.9
Q ss_pred EEEEeeEEEE----cceeEEecCcCccc-CCCCCCCCceeEEEEecC
Q 045478 700 IYVHAKGMIV----DDEYVIMGSANINQ-RSLEGSRDTEIAMGAYQP 741 (852)
Q Consensus 700 iyvHSKlmIV----DD~~~iIGSANln~-RSm~~n~DsEi~v~i~d~ 741 (852)
+-+|+|+.+. =+..++|||||+.. -.+. .+-.| +++..|+
T Consensus 79 ~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~ 123 (296)
T PF09565_consen 79 PPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDP 123 (296)
T ss_pred CCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecCh
Confidence 5799999999 35689999999988 2222 24479 5566565
|
All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases. |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=82.66 E-value=5.5 Score=39.28 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=50.0
Q ss_pred CCcEEEEEE--CCee---EEEeeeecCCCCCeeeeEEEEeecC----CCceEEEEEEecCCCC-CceeeeEeeeceec
Q 045478 78 SNPYVSVCL--SGAT---VAQTRVISNCENPFWDEHFCVPVAH----SVVNLEFHVKDNDILG-AELIGVVQIPVEKI 145 (852)
Q Consensus 78 sdpYv~v~l--~~~~---~~rT~vi~~s~nP~WnE~f~~~~~~----~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l 145 (852)
++.||++.+ ++.. .-.|+.+.-+..+.|||-..|++.- ..+.+.|+||+.+..+ ...||.+.+++-+-
T Consensus 30 ~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 30 SDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 788999876 3332 2366666667789999998888653 3467899999976554 67899998888654
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B | Back alignment and domain information |
|---|
Probab=82.53 E-value=2.8 Score=46.02 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=30.3
Q ss_pred EEEEeeEEEEc-------ceeEEecCcCcccCCCCCCCCceeEEEEecCccc
Q 045478 700 IYVHAKGMIVD-------DEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYT 744 (852)
Q Consensus 700 iyvHSKlmIVD-------D~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~ 744 (852)
.-+|||+++|= -+|+-+|+-|+|...-..= |.+++..-+++.+
T Consensus 102 lKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr~Y--tD~~l~Ta~~~i~ 151 (352)
T PF13090_consen 102 LKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTARIY--TDLSLFTADPEIG 151 (352)
T ss_dssp -EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCCCE--EEEEEEE--HHHH
T ss_pred hhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchhhe--ecceeecCCHHHH
Confidence 58999999985 3799999999999998755 7888887666543
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=81.59 E-value=12 Score=37.38 Aligned_cols=91 Identities=18% Similarity=0.291 Sum_probs=58.5
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEE--CCeeE---EEeeeec-
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCL--SGATV---AQTRVIS- 98 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l--~~~~~---~rT~vi~- 98 (852)
+...+.|+|.++.+++....... ++.|+++.+ ++... ..|+...
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~------------------------------~~~~v~~~l~~g~~~L~~~~~T~~~~~ 55 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSF------------------------------EDFYLSCSLYHGGRLLCSPVTTKPVKI 55 (171)
T ss_pred ccccEEEEEEEeecCChHHhhcc------------------------------ccEEEEEEEEECCEECcCceecccccc
Confidence 45678899999999885432222 678888865 44422 2443321
Q ss_pred -C--CCCCeeeeEEEEeecC----CCceEEEEEEecCCCC----------CceeeeEeeeceec
Q 045478 99 -N--CENPFWDEHFCVPVAH----SVVNLEFHVKDNDILG----------AELIGVVQIPVEKI 145 (852)
Q Consensus 99 -~--s~nP~WnE~f~~~~~~----~~~~l~~~V~d~d~~~----------~~~iG~~~i~l~~l 145 (852)
+ ...+.|||...|++.- ..+.+.|++++....+ ...||.+.+++-+-
T Consensus 56 ~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 56 TKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred ccCccccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 1 3357899998887542 3467899998854332 46888888887653
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 86.6 bits (214), Expect = 6e-20
Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 34/166 (20%)
Query: 15 GSAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHS 74
+ S + +G L + I EA L R +
Sbjct: 17 RGSMSSGTMKFNGYLRVRIGEAVGLQPTRW--------------------SLRHSLFKKG 56
Query: 75 MITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGA-E 133
+PY++V + V QT P ++E FC V +LE V LG
Sbjct: 57 HQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANV-TDGGHLELAVFHETPLGYDH 115
Query: 134 LIGVVQIPVEKILCG----NEVDDWFPIAGSYGKNLKPFPQLHVSM 175
+ + +++L + + W L+P ++ V +
Sbjct: 116 FVANCTLQFQELLRTTGASDTFEGWVD--------LEPEGKVFVVI 153
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 2e-19
Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 32/161 (19%)
Query: 22 PVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPY 81
VF +G L + I EA SL +PY
Sbjct: 2 VVF-NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTF-------------------LLDPY 41
Query: 82 VSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGA-ELIGVVQI 140
+++ + + + QT +P W + F V + +E V + +G + + I
Sbjct: 42 IALNVDDSRIGQTATKQKTNSPAWHDEFVTDV-CNGRKIELAVFHDAPIGYDDFVANCTI 100
Query: 141 PVEKIL--CGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179
E++L +DW L+P +++V +
Sbjct: 101 QFEELLQNGSRHFEDWID--------LEPEGKVYVIIDLSG 133
|
| >1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A* Length = 506 | Back alignment and structure |
|---|
Score = 90.5 bits (224), Expect = 4e-19
Identities = 75/534 (14%), Positives = 137/534 (25%), Gaps = 127/534 (23%)
Query: 210 GNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKL 269
+ L Q G G K ++ + A + I + F
Sbjct: 42 PSDWLLQTPGCW-GDDKCADRVGTKRL-----LAKMTENIGNATRTVDISTLAPFPNGAF 95
Query: 270 VREPTKPLPSFGELSFGELLKHKSQEG--VRVLLLIWDDKTSHDNLFIKTEGVMQTHDEE 327
LK + +G ++V +L+ H N + + +E
Sbjct: 96 QDA------------IVAGLKESAAKGNKLKVRILVGAAPVYHMN------VIPSKYRDE 137
Query: 328 TRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIG 387
++ N L + + F +H K ++VD + A G
Sbjct: 138 LTAKLGKAAENITLNVASMTTSKTAFSW--------NHSKILVVD-------GQS-ALTG 181
Query: 388 GLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDIL 447
G++ Y H P D+ + GPAA
Sbjct: 182 GINSWKDDYLDTTH----------------------------PVSDVDLALTGPAAGSAG 213
Query: 448 INFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYKPTRAGSEKETENW 507
+ W + + + W+ S P +K T + T N
Sbjct: 214 RYLDTLWTWTCQNKSNIAS---VWFAAS--------GNAGCMPTMHKDTNPKASPATGNV 262
Query: 508 HIQVFRSI-----DSGSVKGFPKDVEEAVAQNLVCA--------KDLKVDKSIHSAYVKA 554
+ + D F D+ A V +D SA
Sbjct: 263 PVIAVGGLGVGIKDVDPKSTFRPDLPTASDTKCVVGLHDNTNADRDYDTVNPEESALRAL 322
Query: 555 IRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANER-FSVYVVIP 613
+ SA+ I I Q ++ P + + AL V +V+
Sbjct: 323 VASAKGHIEISQQDL--NATCPPLPRYDIR-----LYDALA-----AKMAAGVKVRIVVS 370
Query: 614 MWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAP 673
A + + G + ++ L++ + Q + C + A
Sbjct: 371 --------DPANRGAVGSGGYSQIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLAT 422
Query: 674 PLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLE 727
R+ + H K + VD +GS N+ L+
Sbjct: 423 F------------RSSPNGKWADGHPYAQHHKLVSVDSSTFYIGSKNLYPSWLQ 464
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 3e-17
Identities = 33/144 (22%), Positives = 51/144 (35%), Gaps = 34/144 (23%)
Query: 15 GSAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHS 74
GS+ S V G L + +L+A L D SG
Sbjct: 1 GSSGSSGDVKDVGILQVKVLKAADLLAADF-------------------------SG--- 32
Query: 75 MITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGA-E 133
S+P+ + L G QT + NP W++ F P+ LE V D D +
Sbjct: 33 --KSDPFCLLEL-GNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD 89
Query: 134 LIGVVQIPVEKILCGNEVDDWFPI 157
+G V IP+ I + + + +
Sbjct: 90 FLGKVAIPLLSIR--DGQPNCYVL 111
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 1e-16
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 77 TSNPYVSVCLSGA--TVAQTRVISNCENPFWDEHFCVPVAHSVVN-LEFHVKDNDILGAE 133
T +PYV + +S + +TR +N NP W+E F + + N LE + D + + E
Sbjct: 26 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 85
Query: 134 LIGVVQIPVEKILCGNEVDDWFP 156
+G V + G + + F
Sbjct: 86 TLGTATFTVSSMKVGEKKEVPFI 108
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 2e-16
Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 37/166 (22%)
Query: 15 GSAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHS 74
GS+ S P G L++ ++ AK L + D +
Sbjct: 1 GSSGSSGPH---GTLEVVLVSAKGLEDADFLN---------------------------- 29
Query: 75 MITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGA-E 133
+PYV + P W+E F V+ L+ + D D+ +
Sbjct: 30 --NMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDD 87
Query: 134 LIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179
+G IP+E + + + ++ V++ +KP
Sbjct: 88 AVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKG---EIWVALSFKP 130
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 3e-15
Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 41/164 (25%)
Query: 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCL 86
+ + ++ L D+ G S+PYV V L
Sbjct: 8 RVVRVKVIAGIGLAKKDI-------------------------LG-----ASDPYVRVTL 37
Query: 87 SGA-----TVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGA-ELIGVVQI 140
T QT+ I NP W+E V + F V D + L + +G V +
Sbjct: 38 YDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDV 97
Query: 141 PVEKILCGNEVDDWFPIAGSYGKNLKPFP-----QLHVSMQYKP 179
P+ + N + + + + L + M Y P
Sbjct: 98 PLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 141
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 6e-15
Identities = 31/164 (18%), Positives = 50/164 (30%), Gaps = 41/164 (25%)
Query: 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCL 86
+ + ++ L D+ G S+PYV V L
Sbjct: 20 RIVRVRVIAGIGLAKKDI-------------------------LG-----ASDPYVRVTL 49
Query: 87 -----SGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGA-ELIGVVQI 140
T QT+ I NP W+E V L F V D + L + +G V +
Sbjct: 50 YDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDV 109
Query: 141 PVEKILCGNEVDDWFPIAGSYGKNLKPFP-----QLHVSMQYKP 179
P+ + N + + + + L + M Y P
Sbjct: 110 PLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 36/162 (22%)
Query: 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVS 83
F + L + I++A LP +D+ G TS+PYV
Sbjct: 16 FQNNQLLVGIIQAAELPALDM-------------------------GG-----TSDPYVK 45
Query: 84 VCL--SGATVAQTRVISNCENPFWDEHFCVPVAHSVVN---LEFHVKDNDILGA-ELIGV 137
V L +T+V NP ++E F V +S + L V D D ++IG
Sbjct: 46 VFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGE 105
Query: 138 VQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179
++P+ + G+ ++W + + + + + S++Y P
Sbjct: 106 FKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVP 147
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCL----SGATVAQTRVISNCENPFWDEHFCVPVAHSV-- 117
+ + L S+PYV + L +T + N NP+++E F V
Sbjct: 157 LEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQ 216
Query: 118 -VNLEFHVKDNDILGA-ELIGVVQIPVEKILCGNEVDDWF 155
V + V D D +G + IG V + G E+ W
Sbjct: 217 KVQVVVTVLDYDKIGKNDAIGKVFVGYNS--TGAELRHWS 254
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-14
Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 38/159 (23%)
Query: 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCL 86
G L + + A ++P G +P VSV
Sbjct: 7 GMLRVIVESASNIPKTK--------------------------FG-----KPDPIVSVIF 35
Query: 87 SGATVAQTRVISNCENPFWDEHFCVPVAHSVVN----LEFHVKDNDILGA-ELIGVVQIP 141
+T+ + N NP W+E + ++ L VKD + +G +LIG +
Sbjct: 36 -KDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVA 94
Query: 142 VEKILCGNEVDDWFPIAGSYGKNLKPFP-QLHVSMQYKP 179
++ + + + + + + + + Y P
Sbjct: 95 LKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP 133
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-14
Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 49/172 (28%)
Query: 8 TPKSTSSGSAASDEPV-------------FLHGDLDLSILEAKSLPNMDLITESMRKCCN 54
+P G D V F + L + I++A LP +D+
Sbjct: 2 SPGIGGGGGGILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDM---------- 51
Query: 55 MCGHCRFPFKKTRGLSGRHSMITSNPYVSVCL--SGATVAQTRVISNCENPFWDEHFCVP 112
G TS+PYV V L +T+V NP ++E F
Sbjct: 52 ---------------GG-----TSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK 91
Query: 113 VAHSVVN---LEFHVKDNDILGA-ELIGVVQIPVEKILCGNEVDDWFPIAGS 160
V +S + L V D D ++IG ++P+ + G+ ++W + +
Sbjct: 92 VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 143
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 3e-14
Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 77 TSNPYVSVCL---SGATVAQTRVISNCENPFWDEHFCVPVAHSVVN---LEFHVKDNDIL 130
+ YV + +G+ AQT + + W+E +P+A + L ++ D
Sbjct: 43 GCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRF 102
Query: 131 GA-ELIGVVQIPVEKILCGNEVDDWFPI 157
+ G +++ ++ W +
Sbjct: 103 SRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 1e-13
Identities = 28/182 (15%), Positives = 54/182 (29%), Gaps = 37/182 (20%)
Query: 9 PKSTSSGSAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRG 68
S S S + + L ++++ AK N
Sbjct: 18 GMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWF---------------------- 55
Query: 69 LSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDND 128
+PYV V + G + +T +N +P W + V V V L F V +
Sbjct: 56 --------GPSPYVEVTVDGQSK-KTEKCNNTNSPKWKQPLTVIV-TPVSKLHFRVWSHQ 105
Query: 129 ILGA-ELIGVVQIPVEKILC---GNEVDDWFPIAGSYGK-NLKPFPQLHVSMQYKPIGQI 183
L + L+G + + + L + + K + L + + +
Sbjct: 106 TLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLESE 165
Query: 184 PL 185
+
Sbjct: 166 VV 167
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-13
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 67 RGLSGRHSMITSNPYVSVCL--SGATVAQTRVISNCENPFWDEHFCVPVAHSVVN---LE 121
L TS+PYV V L +T+V NP ++E F V +S + L
Sbjct: 52 AELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLV 111
Query: 122 FHVKDNDILGA-ELIGVVQIPVEKILCGNEVDDWFPI 157
V D D ++IG ++P+ + G+ ++W +
Sbjct: 112 MAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 148
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 2e-13
Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 37/142 (26%)
Query: 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVS 83
L + + E L D + + SNPYV
Sbjct: 20 QQTQSLVVHVKECHQLAYAD---------------------EAKK--------RSNPYVK 50
Query: 84 VCL----SGATVAQTRVISNCENPFWDEHFCVPVAHSVVN---LEFHVKDNDILGA-ELI 135
L S +T + + NP +DE + S++ L+F V + G +
Sbjct: 51 TYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFL 110
Query: 136 GVVQIPVEKILCGNEVDDWFPI 157
G +I ++ ++D P+
Sbjct: 111 GEAEIQMDSWKLDKKLDHCLPL 132
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 3e-13
Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 48/167 (28%)
Query: 8 TPKSTSSGSAASDEP----------VFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCG 57
+P + G D L + + +AK+L MD
Sbjct: 2 SPGISGGGGGILDSMERRGRIYIQAHIDREVLIVVVRDAKNLVPMD-------------- 47
Query: 58 HCRFPFKKTRGLSGRHSMITSNPYVSVCL----SGATVAQTRVISNCENPFWDEHFCVPV 113
+G S+PYV + L + +T+ I NP W+E F +
Sbjct: 48 -----------PNG-----LSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91
Query: 114 AHSVVN--LEFHVKDNDILGA-ELIGVVQIPVEKILCGNEVDDWFPI 157
S + L + D D+ + +G + + ++ VD WF +
Sbjct: 92 KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQ-KAGVDGWFKL 137
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-12
Identities = 34/161 (21%), Positives = 52/161 (32%), Gaps = 39/161 (24%)
Query: 13 SSGSAASDEP----------VFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFP 62
SSGS+ S LH L + ++EA+ LP
Sbjct: 2 SSGSSGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPI------------------S 43
Query: 63 FKKTRGLSGRHSMITSNPYVSVCLS--GATVAQTRVISNCENPFWDEHFCVPVAHSVVN- 119
+R SNPYV +CL QT V + P ++E + +
Sbjct: 44 HDGSRQDMA-----HSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQR 98
Query: 120 --LEFHVKDNDILGA-ELIGVVQIPVEKILCGNEVDDWFPI 157
L V D D +IG V +P+ ++ W +
Sbjct: 99 RTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKAL 139
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 1e-12
Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 45/156 (28%)
Query: 13 SSGSAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGR 72
+ + D + ++++ A+ L D +G
Sbjct: 3 AVKQSVLDGTSKWSAKISITVVCAQGLQAKDK-------------------------TG- 36
Query: 73 HSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGA 132
+S+PYV+V + G T +T+ I NP W+E+F +S ++ V D D
Sbjct: 37 ----SSDPYVTVQV-GKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIK 91
Query: 133 ------------ELIGVVQIPVEKILCGNEVDDWFP 156
+ +G I V + E+D W+
Sbjct: 92 SRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYN 125
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 3e-12
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 78 SNPYVSVCL----SGATVAQTRVISNCENPFWDEHFCVPVAHSVVN---LEFHVKDNDIL 130
S+PYV + L + +T V NP +D+ F V+ V L+ VK++
Sbjct: 44 SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGF 103
Query: 131 GA---ELIGVVQIPVEKILCGNEVDDWFPI 157
+ L+G V + + W+ +
Sbjct: 104 LSKDKGLLGKVLVALASEELAKGWTQWYDL 133
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 3e-12
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 9/121 (7%)
Query: 67 RGLSGRHSMITSNPYVSVCL--SGATVAQTRVISNCENPFWDEHFCVPVAHSVVN---LE 121
L + S S+PYV + L QT+V NP ++E F V + + L
Sbjct: 30 LDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLH 89
Query: 122 FHVKDNDILGA-ELIGVVQIPV--EKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178
F V D D +LIG V + E + W I + +L+ S+ Y
Sbjct: 90 FSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEK-ADLGELNFSLCYL 148
Query: 179 P 179
P
Sbjct: 149 P 149
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 8e-07
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 9/100 (9%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCL----SGATVAQTRVISNCENPFWDEHFCVPVAHSV-- 117
K L S+PYV L +T + N NP ++E VA
Sbjct: 159 IKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVE 218
Query: 118 -VNLEFHVKDNDILGA-ELIGVVQIPVEKILCGNEVDDWF 155
V L V D D +G E+IGV ++ E + + W
Sbjct: 219 NVGLSIAVVDYDCIGHNEVIGVCRVGPEA-ADPHGREHWA 257
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 9e-12
Identities = 85/598 (14%), Positives = 164/598 (27%), Gaps = 198/598 (33%)
Query: 166 KPFPQLHVSMQYKPIGQI--PLYKDGVGAGPDYQGVPKTYFPLRKEGNLTLYQDAHVPPG 223
+ F + +VS + +P ++ L + LR N+ + G
Sbjct: 124 QVFAKYNVS-RLQPYLKLRQALLE------------------LRPAKNVLID-------G 157
Query: 224 MLPEIALDG-GKTFRHGQCW--EEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSF 280
+L G GKT W ++C + + + I W
Sbjct: 158 VL------GSGKT------WVALDVCLSYKVQCKMDFKIFW------------------- 186
Query: 281 GELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVMQTHD--EETRKFFKHSS-V 337
L+ ++ + LL D + ++ H E R+ K
Sbjct: 187 --LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 338 NCVLAPRYASNKLSIFKQQVVGTLFTHHQKC-VIVDTPASGNNRKISAFIGGLDLCDGRY 396
NC+L N + F C +++ T ++++ F+ +
Sbjct: 245 NCLLVLLNVQNA-KAWN------AFNL--SCKILLTT----RFKQVTDFLSAAT---TTH 288
Query: 397 DTPEHRLFG----DLNTVFANDFHNP--SLPSHAKG--PREPWHDMHCKVEGPAAYDILI 448
+ +H ++ ++ LP P + + +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP------RRLSIIA----ESIR 338
Query: 449 NFEQRWRRSTKWREFRLKKVTHWYDDSLINLDRIGITPSTGPHSYKPTRAGSEKETENWH 508
+ W W+ K+T + SL L+ P Y+
Sbjct: 339 DGLATWDN---WKHVNCDKLTTIIESSLNVLE---------PAEYR-------------- 372
Query: 509 IQVFRSIDSGSVKGFPKDV------------------EEAVAQNLV----CAKDLKVDK- 545
++F + SV FP V L K K
Sbjct: 373 -KMFDRL---SV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 546 SIHSAYVK-----AIRSAQHFIYIENQYFIGSSYHWPSYKNAGADN---------LIPME 591
SI S Y++ A H ++ Y I ++ D L +E
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 592 LALKIV--SKINANERF---SVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQA 646
++ + + RF + W +Q++ + YK
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF---------YK---PY 533
Query: 647 LQDNGLSNKYHPQDYLSFYCLGKRE-----APPLDRSQMNQQTENRALA--AAQKFRR 697
+ DN + L F L K E + D ++ E+ A+ A ++ +R
Sbjct: 534 ICDNDPKYERLVNAILDF--LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 3e-06
Identities = 56/426 (13%), Positives = 116/426 (27%), Gaps = 108/426 (25%)
Query: 491 HSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFP-KDVEE---AVAQNLVCAKDLKVDKS 546
H + G + + VF V F KDV++ ++ + +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFED---AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 547 IHSAY--VKAIRSAQHFIYIENQYFIGSS----YHW--PSYKNAGADNLIPMELALKIVS 598
+ + S Q + Q F+ Y + K + + ++
Sbjct: 61 VSGTLRLFWTLLSKQEEMV---QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 599 KI-NANERFSVYVVIPMWPEGNPNSA---AVQE-------ILYWQGQTMSMMYK--IVAQ 645
++ N N+ F+ Y V P A+ E ++ G + K +
Sbjct: 118 RLYNDNQVFAKYNV----SRLQPYLKLRQALLELRPAKNVLID--G--VLGSGKTWVALD 169
Query: 646 ALQDNGLSNKYHPQDY-LSFYCLGKREAPPLDRSQMN-----------------QQTENR 687
+ K + + L+ +P + + R
Sbjct: 170 VCLSYKVQCKMDFKIFWLNL---KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 688 ALAAAQKFRRFMIY-VHAKGMIV-DDEYV----IMGSANINQRSLEGSRDTEIAMGAYQP 741
+ + RR + + ++V + V + N++ + L +R ++
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 742 HYTWAAKKSHPRGQVYGYRTSLWAEHLGTLEDTFRE------PQSL-----ECMQRVNRI 790
T + H SL ++L P+ L +
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 791 AGENWKAFVCDAHKEMRGHLMQYPVQISREGKVSTLPGYDT---------FP-DVGGKIL 840
+NWK CD + ++ S ++ L + FP I
Sbjct: 345 --DNWKHVNCDKLTTI--------IESS----LNVLEPAEYRKMFDRLSVFPPSA--HI- 387
Query: 841 GAPTSL 846
PT L
Sbjct: 388 --PTIL 391
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-11
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 67 RGLSGRHSMITSNPYVSVCL-----SGATVAQTRVISNCENPFWDEHFCVPVAHSVVN-- 119
LS + V + S + +TR + + ++E F V +++ ++
Sbjct: 53 SNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQK 112
Query: 120 -LEFHVKDNDILGA-ELIGVVQIPVEKILCGNEV-DDWFPI 157
L V D E +G QI + ++ E W+ +
Sbjct: 113 TLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNL 153
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 1e-11
Identities = 30/142 (21%), Positives = 46/142 (32%), Gaps = 40/142 (28%)
Query: 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVS 83
L L I+E K L + G T +PYV
Sbjct: 24 AQDRVLLLHIIEGKGLISKQ--------------------------PG-----TCDPYVK 52
Query: 84 VCL----SGATVAQTRVISNCENPFWDEHFCVPVAHSVVN--LEFHVKDNDILGA--ELI 135
+ L S +T+ + +C +P + EHF PV L V + LI
Sbjct: 53 ISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLI 112
Query: 136 GVVQIPVEKIL-CGNEVDDWFP 156
G + V+ +L E+ W+
Sbjct: 113 GCMSFGVKSLLTPDKEISGWYY 134
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-11
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 77 TSNPYVSVCL----SGATVAQTRVISNCENPFWDEHFC-VPVAHSVVN---LEFHVKDND 128
NPYV L + +T++ NP ++E + + L+ V +
Sbjct: 39 DPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE 98
Query: 129 ILGA-ELIGVVQIPVEKILCGNEVDDWFPI 157
L +G + +P++ E W+ +
Sbjct: 99 SLRENFFLGGITLPLKDFNLSKETVKWYQL 128
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-11
Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 67 RGLSGRHSMITSNPYVSVCL--SGATVAQTRVISNCENPFWDEHFC-VPVAHSVVN---L 120
+ L + TS+P+V + L +T+V NP W+E F + V L
Sbjct: 36 QELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRIL 95
Query: 121 EFHVKDNDILGA-ELIGVVQIPVEKILCGNEVDDWFPI 157
V D D + IG V IP+ K+ W +
Sbjct: 96 YLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL 133
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 4e-11
Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 42/145 (28%)
Query: 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVS 83
+ L ++IL AK LP+ + NPYV
Sbjct: 18 KVGHQLIVTILGAKDLPSRED-------------------------GR-----PRNPYVK 47
Query: 84 VCL----SGATVAQTRVISNCENPFWDEHFC-VPVAHSVVN---LEFHVKDNDILGA--- 132
+ S +T+ + P W++ F PV LE + D +
Sbjct: 48 IYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEES 107
Query: 133 ELIGVVQIPVEKILCGNEVDDWFPI 157
E +G + I +E L ++ W+ +
Sbjct: 108 EFLGEILIELETAL-LDDEPHWYKL 131
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 7e-11
Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 42/144 (29%)
Query: 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVS 83
+ L ++IL AK LP+ + NPYV
Sbjct: 15 KVGHQLIVTILGAKDLPSRED-------------------------GR-----PRNPYVK 44
Query: 84 VCL----SGATVAQTRVISNCENPFWDEHFC-VPVAHSVVN---LEFHVKDNDILGA--- 132
+ S +T+ + P W++ F PV LE + D +
Sbjct: 45 IYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEES 104
Query: 133 ELIGVVQIPVEKILCGNEVDDWFP 156
E +G + I +E L ++ W+
Sbjct: 105 EFLGEILIELETAL-LDDEPHWYK 127
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-10
Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 48/149 (32%)
Query: 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVC 85
G+L + IL+A++L D +G S+P+V V
Sbjct: 17 LGNLIIHILQARNLVPRDN-------------------------NG-----YSDPFVKVY 46
Query: 86 L-------------SGATVAQTRVISNCENPFWDEHFC-VPVAHSVVN---LEFHVKDND 128
L S +T+ + NP W++ ++ + LE V D D
Sbjct: 47 LLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYD 106
Query: 129 ILGA-ELIGVVQIPVEKILCGNEVDDWFP 156
+ + +G V I + + W+P
Sbjct: 107 RFSSNDFLGEVLIDLSSTSHLDNTPRWYP 135
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-10
Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 39/142 (27%)
Query: 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVS 83
+ +L +I+ AK L MD +G ++PYV
Sbjct: 26 QDNSNLQCTIIRAKGLKPMDS-------------------------NG-----LADPYVK 55
Query: 84 VCL----SGATVAQTRVISNCENPFWDEHFC-VPVAHSVVN---LEFHVKDNDILGA-EL 134
+ L S + +T+ + N NP W+E + + L V D D G E
Sbjct: 56 LHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEF 115
Query: 135 IGVVQIPVEKILCGNEVDDWFP 156
IG + ++K+ +
Sbjct: 116 IGETRFSLKKLKANQRKNFNIC 137
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-10
Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 37/142 (26%)
Query: 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVS 83
F ++I EA+ LP MD + + TS+PY+
Sbjct: 19 FERKAFVVNIKEARGLPAMD----------------------EQSM-------TSDPYIK 49
Query: 84 VCL--SGATVAQTRVISNCENPFWDEHFCV-PVAHSVVN---LEFHVKDNDILGA-ELIG 136
+ + +TRV+ +P +DE F + ++ + L F + D ++IG
Sbjct: 50 MTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIG 109
Query: 137 VVQIPVEKI-LCGNEVDDWFPI 157
V IP+ I L ++ I
Sbjct: 110 EVLIPLSGIELSEGKMLMNREI 131
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 6e-10
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 35/136 (25%)
Query: 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCL 86
G L++ ++ A+SL S T PYV V L
Sbjct: 30 GQLEVEVIRARSLTQKPG-----------------------------SKSTPAPYVKVYL 60
Query: 87 ----SGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVK-DNDILGA-ELIGVVQI 140
+ +TR+ +P + + + L+ V D + +GV QI
Sbjct: 61 LENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQI 120
Query: 141 PVEKILCGNEVDDWFP 156
+E++ + V W+
Sbjct: 121 LLEELDLSSMVIGWYK 136
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 1e-09
Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 3/152 (1%)
Query: 77 TSNPYVSVCLSGATV--AQTRVISNCENPFWDEHFCVPVAHSVVN-LEFHVKDNDILGAE 133
T +PYV + +S +TR +N NP W+E F + + N LE + D + + E
Sbjct: 41 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 100
Query: 134 LIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAG 193
+G V + G + + F L+ ++ + + +
Sbjct: 101 TLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQ 160
Query: 194 PDYQGVPKTYFPLRKEGNLTLYQDAHVPPGML 225
L + + L+ VP +
Sbjct: 161 RKEHIRESMKKLLGPKNSEGLHSARDVPVVAI 192
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-09
Identities = 19/134 (14%), Positives = 45/134 (33%), Gaps = 37/134 (27%)
Query: 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG 88
+ L++L AK+L D +P+ + + G
Sbjct: 7 IRLTVLCAKNLAKKDF-------------------------FR-----LPDPFAKIVVDG 36
Query: 89 A-TVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILG----AELIGVVQIPVE 143
+ T + N +P W++H+ + V + + V ++ + A +G V++
Sbjct: 37 SGQCHSTDTVKNTLDPKWNQHYDLYVGKTDS-ITISVWNHKKIHKKQGAGFLGCVRLLSN 95
Query: 144 KILCGNEVDDWFPI 157
I + + +
Sbjct: 96 AIS-RLKDTGYQRL 108
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 2e-09
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 78 SNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGV 137
N YV++ + + T + P W++ F + + L V + ++ ++G
Sbjct: 23 FNTYVTLKV-QNVKSTTIAVRGS-QPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGT 80
Query: 138 VQIPVEKILCGNE--VDDWFPI 157
V IP+ I NE +W +
Sbjct: 81 VWIPLRTIRQSNEEGPGEWLTL 102
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 4e-08
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 79 NPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVV 138
N YV++ + + T + P W++ F + + L V + ++ ++G V
Sbjct: 33 NTYVTLKV-QNVESTTIAVRGS-QPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTV 90
Query: 139 QIPVEKILCGNE--VDDWFPI 157
IP+ I NE +W +
Sbjct: 91 WIPLRTIRQSNEEGPGEWLTL 111
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 4e-08
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCL----SGATVAQTRVISNCENPFWDEHFCVPVAHSV-- 117
+ L+ + S+P+V + L +T++ NP ++E F + HS
Sbjct: 44 IRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLA 103
Query: 118 -VNLEFHVKDNDILGA-ELIGVVQIPVEKILCGNEVDDWFPI 157
+L+ V D DI + + IG Q+ + G + W+
Sbjct: 104 KKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYEC 143
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 52.3 bits (124), Expect = 4e-07
Identities = 32/195 (16%), Positives = 53/195 (27%), Gaps = 43/195 (22%)
Query: 29 LDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG 88
L L I+EA+ LP Y +CL
Sbjct: 13 LKLWIIEARELPPKK-----------------------------------RYYCELCLDD 37
Query: 89 ATVAQTRVIS---NCENPFWDEHFCVPVAHSVVNLEFHV-KDNDILG----AELIGVVQI 140
A+T + + FW EHF +V L H+ +D+D A +G+V +
Sbjct: 38 MLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTV 97
Query: 141 PVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIGQIPLYKDGVGAGPDYQGVP 200
PV + + + W+P+ G +
Sbjct: 98 PVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQT 157
Query: 201 KTYFPLRKEGNLTLY 215
+ P+ Y
Sbjct: 158 MSILPMELYKEFAEY 172
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 40/137 (29%)
Query: 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCL 86
L + +L+A+ LP D+ SG S+PYV V L
Sbjct: 30 NTLTVVVLKARHLPKSDV-------------------------SG-----LSDPYVKVNL 59
Query: 87 ----SGATVAQTRVISNCENPFWDEHFCVPVAHSV---VNLEFHVKDNDILG-AELIGVV 138
+ +T V N ++E F + +++EF V D++ E+IG +
Sbjct: 60 YHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRL 119
Query: 139 QIPVEKILCGNEVDDWF 155
+ G+ W
Sbjct: 120 VLGATAE--GSGGGHWK 134
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 10/100 (10%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCL----SGATVAQTRVISNCENPFWDEHFCVPVAHSV-- 117
K R L TS+PYV V L +T NP ++E F +
Sbjct: 23 IKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLR 82
Query: 118 -VNLEFHVKDNDILGA-ELIGVVQIPVEKILCGNEVDDWF 155
+ V D D L ++IG + + + EV W
Sbjct: 83 ETTIIITVMDKDKLSRNDVIGKIYLSWKSG--PGEVKHWK 120
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCL----SGATVAQTRVISNCENPFWDEHFCVPVAHSV-- 117
+ + L S+PYV + L +T + N NP+++E F V
Sbjct: 32 LEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQ 91
Query: 118 -VNLEFHVKDNDILGA-ELIGVVQIPVEKILCGNEVDDWF 155
V + V D D +G + IG V + G E+ W
Sbjct: 92 KVQVVVTVLDYDKIGKNDAIGKVFVGYNST--GAELRHWS 129
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 5e-06
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENP-FWDEHFCVPVAHSVVN--- 119
K L GR + V G + +RV+ NCE+ +DE F PVA S+
Sbjct: 28 KTVSELRGRA-----DRIAKVTFRGQS-FYSRVLENCEDVADFDETFRWPVASSIDRNEV 81
Query: 120 LEFHVKD-NDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFP-QLHVSMQY 177
LE + + + + +LIG ++ ++K++ N V+ + N L + ++Y
Sbjct: 82 LEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDD---NNAIIKTSLSMEVRY 138
Query: 178 KP 179
+
Sbjct: 139 QA 140
|
| >3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae} Length = 458 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 9e-06
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 703 HAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYTWAAK 748
H KG+ VDD Y+++ N+N R+ D E + Y P A+
Sbjct: 364 HLKGVWVDDRYILLTGNNLNPRAWR--LDAENGLLIYDPQQQLLAQ 407
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 1e-04
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 8/85 (9%)
Query: 75 MITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVN--LEFHVKDNDILGA 132
++ Y+ V G +T V+ N NP W + L V D D
Sbjct: 411 TTATDAYLKVFF-GGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWD 469
Query: 133 -ELIGVVQIPVEKILCGNEVDDWFP 156
+L+G +
Sbjct: 470 DDLLGSCDRSPHSG----FHEVTCE 490
|
| >1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A Length = 155 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 701 YVHAKGMIVDDEYVIMGSANINQRSLEGSRDT 732
H K +IVD+ V GS N + + + +
Sbjct: 92 IQHDKVIIVDNVTVETGSFNFTKAAETKNSEN 123
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 852 | |||
| 1v0w_A | 506 | Phospholipase D; hydrolase, substrate SOAK, dibuty | 100.0 | |
| 3hsi_A | 458 | Phosphatidylserine synthase; CDP- diacylglycerol-- | 100.0 | |
| 1xdp_A | 687 | Polyphosphate kinase; PPK, PPK complex with AMPPNP | 99.87 | |
| 2o8r_A | 705 | Polyphosphate kinase; structural genomics, protein | 99.85 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.82 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.78 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.76 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.76 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.75 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.75 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.75 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.72 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.71 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.7 | |
| 4ggj_A | 196 | Mitochondrial cardiolipin hydrolase; piRNA pathway | 99.69 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.68 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.64 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.62 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.62 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.61 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.6 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.6 | |
| 1byr_A | 155 | Protein (endonuclease); phosphodiesterase,; 2.00A | 99.6 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.6 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.6 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.59 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.59 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.58 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.58 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.58 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.58 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.58 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.57 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.56 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.56 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.56 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.55 | |
| 4gel_A | 220 | Mitochondrial cardiolipin hydrolase; piRNA, phosph | 99.54 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.54 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.54 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.53 | |
| 1byr_A | 155 | Protein (endonuclease); phosphodiesterase,; 2.00A | 99.48 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.46 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.45 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.45 | |
| 4ggj_A | 196 | Mitochondrial cardiolipin hydrolase; piRNA pathway | 99.45 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.41 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.4 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.39 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.36 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.36 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.29 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.29 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.23 | |
| 4gel_A | 220 | Mitochondrial cardiolipin hydrolase; piRNA, phosph | 99.09 | |
| 1xdp_A | 687 | Polyphosphate kinase; PPK, PPK complex with AMPPNP | 99.0 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.98 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 98.98 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.96 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 98.91 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 98.9 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 98.9 | |
| 3hsi_A | 458 | Phosphatidylserine synthase; CDP- diacylglycerol-- | 98.78 | |
| 1v0w_A | 506 | Phospholipase D; hydrolase, substrate SOAK, dibuty | 98.57 | |
| 2o8r_A | 705 | Polyphosphate kinase; structural genomics, protein | 98.05 | |
| 3qph_A | 342 | TRMB, A global transcription regulator; transcript | 96.14 | |
| 3qph_A | 342 | TRMB, A global transcription regulator; transcript | 95.18 | |
| 2f5t_X | 233 | Archaeal transcriptional regulator TRMB; sugar-bin | 94.95 | |
| 2c1l_A | 358 | Restriction endonuclease; BFII, domain fusion, hyd | 81.91 |
| >1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=350.85 Aligned_cols=387 Identities=16% Similarity=0.124 Sum_probs=205.0
Q ss_pred hhhHHHHHHHHHhccceEEEEEeec-ccceeEecCCCCCCCCCCcchHHHHHHHhhhcC--CeEEEEEeCCCcccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSV-FHPVKLVREPTKPLPSFGELSFGELLKHKSQEG--VRVLLLIWDDKTSHDNLFI 315 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~-~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~G--V~VriLvwD~~~s~~~~~~ 315 (852)
+++|++|+++|++||++|+|++|++ .++ ..+.+|.++|++||+|| |+||||+ |..|+......
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~d-------------~~g~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~~~ 130 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPNG-------------AFQDAIVAGLKESAAKGNKLKVRILV-GAAPVYHMNVI 130 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCCH-------------HHHHHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCCCH
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCCC-------------hHHHHHHHHHHHHHhCCCCcEEEEEE-eCccccccccC
Confidence 6789999999999999999999984 432 23579999999999999 9999997 77544321000
Q ss_pred cccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCc
Q 045478 316 KTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGR 395 (852)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r 395 (852)
.....+.|+..|+++... .+.....+.. ....+.+||+|++|||++ +||+||+||+.++
T Consensus 131 ---------~~~~~~~L~~~g~~~~~~--~~~~~~~~~~--~~~~~~r~H~K~~ViD~~--------~a~~Gg~Nl~~d~ 189 (506)
T 1v0w_A 131 ---------PSKYRDELTAKLGKAAEN--ITLNVASMTT--SKTAFSWNHSKILVVDGQ--------SALTGGINSWKDD 189 (506)
T ss_dssp ---------HHHHHHHHHHHHGGGGGG--EEEEEEEECS--BTTTTBCBCCCEEEETTT--------EEEEESCCCCHHH
T ss_pred ---------CHHHHHHHHhcccceeec--Cccccccccc--cCCccccceeeEEEECCc--------EEEeeccccCccc
Confidence 134455555544432100 0000000000 001124999999999998 9999999998667
Q ss_pred cCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhhhhhhhhhcccccccccc
Q 045478 396 YDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWREFRLKKVTHWYDDS 475 (852)
Q Consensus 396 ~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~~ 475 (852)
|.+. ..+|||++++|+||+|.+++..|.++|+....... .+.. .|....
T Consensus 190 y~~~----------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~~~~-~~~~--~~~~~~ 238 (506)
T 1v0w_A 190 YLDT----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKS-NIAS--VWFAAS 238 (506)
T ss_dssp HTSS----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTTT-STTT--EEEEES
T ss_pred cccC----------------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhccccC-Chhh--hccccc
Confidence 7531 13799999999999999999999999997654210 0000 000000
Q ss_pred cccccccCCCC-CCCCCCCCCCCCCCCCCCCCce--------eeEEecccCCCCCCCCCChHHHHHhhhhcccC-c----
Q 045478 476 LINLDRIGITP-STGPHSYKPTRAGSEKETENWH--------IQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKD-L---- 541 (852)
Q Consensus 476 ~~~~~~~~~~~-~~~P~~~~~~~~~~~~~~~~~~--------vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~-~---- 541 (852)
- ..+..+.+. ...|.. ....+... +|++++.+......+ .+. +...-+++... .
T Consensus 239 ~-~~~~~~~~~~~~~p~~--------~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~--~w~-~~~~~~~~d~P~~~~~~ 306 (506)
T 1v0w_A 239 G-NAGCMPTMHKDTNPKA--------SPATGNVPVIAVGGLGVGIKDVDPKSTFRPD--LPT-ASDTKCVVGLHDNTNAD 306 (506)
T ss_dssp T-TCCCCTTHHHHHSCSS--------CCCCSSEEEEEEECCCSSSCSCCTTCCCCCC--CCC-CSSSCSSTTCCCTTTSC
T ss_pred c-ccccCchhccccCccc--------CcccccccceecccccceeecCCcccccccc--Ccc-cccceeeccccccccCc
Confidence 0 000000000 000100 00112222 233322111000000 000 00000000000 0
Q ss_pred ---cchhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCC
Q 045478 542 ---KVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEG 618 (852)
Q Consensus 542 ---~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg 618 (852)
..+.++.++|+++|.+||++|||++|||.+... |.. .....+..+|.++. .+||+|+||+|..+..
T Consensus 307 ~~~~~~~~~~~~~~~~I~~A~~~I~I~tq~~~pyf~--p~~-------~~~~~i~~aL~~Aa--~rGV~VrIl~~~~~~~ 375 (506)
T 1v0w_A 307 RDYDTVNPEESALRALVASAKGHIEISQQDLNATCP--PLP-------RYDIRLYDALAAKM--AAGVKVRIVVSDPANR 375 (506)
T ss_dssp HHHHHHCHHHHHHHHHHHTCSSEEEEEESCSSCCTT--TSC-------SCCHHHHHHHHHHH--HTTCEEEEEECCGGGC
T ss_pred ccccccccHHHHHHHHHhCcCcEEEEEecccccccc--Ccc-------cchHHHHHHHHHHH--hCCCcEEEEeCCCCch
Confidence 114679999999999999999999966653110 210 00124556666664 3789999999976421
Q ss_pred CCCchh----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHH
Q 045478 619 NPNSAA----VQEILYWQGQTMSMMYKIVAQALQDNGLSNK-YHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQ 693 (852)
Q Consensus 619 ~~~~~~----~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~-~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (852)
...... ...++.. ...+.. --.|.+.|+... ..+...+.++.++..+.. +|..
T Consensus 376 ~~~~~a~~~~~~~L~~~-~~~l~~-----gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~~--~~~~-------------- 433 (506)
T 1v0w_A 376 GAVGSGGYSQIKSLSEI-SDTLRN-----RLANITGGQQAAKTAMCSNLQLATFRSSPNG--KWAD-------------- 433 (506)
T ss_dssp C------CCCCSCTHHH-HHHHHH-----HHHHHHTSHHHHHHHHHHHEEEEECCSSSSS--SCTT--------------
T ss_pred HHHHHhHHHHHHHHHHh-hhhhcc-----cchhcccccchhccccccceeeeeccccCcc--cccc--------------
Confidence 100000 0000000 000000 011222221000 000001233222211000 1210
Q ss_pred hhcceeEEEEeeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCccc
Q 045478 694 KFRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYT 744 (852)
Q Consensus 694 ~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~ 744 (852)
+...++|+|+|||||++++|||+|||.||| +|+++.|+|++.+
T Consensus 434 ---~~~~~lHaK~~vvD~~~~~vGS~N~d~rS~-----~E~~l~i~~~~~a 476 (506)
T 1v0w_A 434 ---GHPYAQHHKLVSVDSSTFYIGSKNLYPSWL-----QDFGYIVESPEAA 476 (506)
T ss_dssp ---SCCCCBCCEEEEETTTEEEEESCCSSCCCS-----BCEEEEEECHHHH
T ss_pred ---CccccceEEEEEECCcEEEEeCCCCCCcch-----hhceeEecCHHHH
Confidence 113699999999999999999999999999 4999999998543
|
| >3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=325.13 Aligned_cols=345 Identities=14% Similarity=0.112 Sum_probs=210.8
Q ss_pred CccccccceeEEeecccCCCCCCCcEEecCCcccchhhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCc
Q 045478 203 YFPLRKEGNLTLYQDAHVPPGMLPEIALDGGKTFRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGE 282 (852)
Q Consensus 203 ~~p~~~g~~v~l~~d~~~~~~~~p~i~l~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~ 282 (852)
.||. .||.|+++.+| +++|++++++|++|+++|+|++|+|.++ ..+
T Consensus 21 ~~~~-~~n~v~~l~~g--------------------~~~~~~l~~~I~~A~~~I~i~~~~~~~d-------------~~g 66 (458)
T 3hsi_A 21 FLAL-QAEQIEFLGSS--------------------AEFKTQIIELIRNAKKRIYVTALYWQKD-------------EAG 66 (458)
T ss_dssp BEEC-CGGGEEECCCH--------------------HHHHHHHHHHHHTCSSEEEEEESCBCSS-------------HHH
T ss_pred Cccc-cCCeEEEEeCH--------------------HHHHHHHHHHHHhcCCEEEEEEEEEecC-------------cHH
Confidence 3444 68999999997 7899999999999999999999988652 345
Q ss_pred chHHHHHHHhhhc--CCeEEEEEeCCC-------cccccccccccccccCCcHHHHhhhcCCC--CEEE--ecCCCCCCc
Q 045478 283 LSFGELLKHKSQE--GVRVLLLIWDDK-------TSHDNLFIKTEGVMQTHDEETRKFFKHSS--VNCV--LAPRYASNK 349 (852)
Q Consensus 283 ~~l~~~L~~~a~~--GV~VriLvwD~~-------~s~~~~~~~~~~~~~~~~~~~~~~l~~~g--v~v~--~~~~~~~~~ 349 (852)
..|.++|.+||+| ||+||||+ |+. |+.... ........|.++| |+|. +++ .|..
T Consensus 67 ~~l~~aL~~aa~r~~GV~Vril~-D~~~~~r~~~g~~~~~----------~~~~~~~~L~~~g~nv~v~~~~f~-~p~~- 133 (458)
T 3hsi_A 67 QEILDEIYRVKQENPHLDVKVLI-DWHRAQRNLLGAEKSA----------TNADWYCEQRQTYQLPDDPNMFFG-VPIN- 133 (458)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEE-ETTGGGSCCC-----C----------CHHHHHHHHHHHHTCTTCCCCEEE-ECSS-
T ss_pred HHHHHHHHHHHhcCCCCEEEEEE-ECcccccccccccccc----------ccHHHHHHHHhhCCCceEeeeecC-Cccc-
Confidence 7999999999999 99999997 873 332110 0123444454434 6666 543 1211
Q ss_pred chhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCC
Q 045478 350 LSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPRE 429 (852)
Q Consensus 350 ~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~ 429 (852)
....+.++|+|++|||++ + ++||+||++ +|.+.. ....
T Consensus 134 -------~~~~~~r~H~Ki~viD~~--------v-~~~G~Ni~d-~y~~~~-------------------------~~~~ 171 (458)
T 3hsi_A 134 -------TREVFGVLHVKGFVFDDT--------V-LYSGASINN-VYLHQF-------------------------EKYR 171 (458)
T ss_dssp -------SSGGGCCEECCEEEETTE--------E-EEESCCBST-TTTTCS-------------------------SCCE
T ss_pred -------cccccCcceeeEEEECCC--------E-EEEeeecCH-HHhcCC-------------------------cccC
Confidence 112457999999999997 7 556699999 443210 0113
Q ss_pred ceeeceeeeeChHHHHHHHHH--HHHHhhhhhhhhhhhccc-----ccccccc--c-cccccc-CCCCCCCCCCCCCCCC
Q 045478 430 PWHDMHCKVEGPAAYDILINF--EQRWRRSTKWREFRLKKV-----THWYDDS--L-INLDRI-GITPSTGPHSYKPTRA 498 (852)
Q Consensus 430 pWhDv~~~v~Gpaa~dl~~~F--~~rW~~~~~~~~~~~~~~-----~~~~~~~--~-~~~~~~-~~~~~~~P~~~~~~~~ 498 (852)
.|+|+ .+.||.+.|....| ...|+...-.. +... ..|.... + ..+... .+. .|
T Consensus 172 ~drd~--~i~g~~~~D~~~~~~~~~~~~g~~v~~---l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-------- 235 (458)
T 3hsi_A 172 YDRYQ--KITHAELADSMVNFINDYLLDFSAVYP---LDVTNRPRTKEIRGNIRAYRKDLAQNGEYS---LK-------- 235 (458)
T ss_dssp ECCEE--EEECHHHHHHHHHHHHHTTCCTTTCEE---SSSSCCCCGGGTHHHHHHHHHHHHHHCCCC---CS--------
T ss_pred cchhh--hhcCchHHHHHHHHHHhhhhcCccchh---hHHHhcccchhhHHHHHHHHHhhhhccccc---cc--------
Confidence 57774 48999999999888 44565332111 0000 0000000 0 000000 000 00
Q ss_pred CCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHHHHHHHHhccceEEEeecccccCCCCCCc
Q 045478 499 GSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPS 578 (852)
Q Consensus 499 ~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~ 578 (852)
....+...+|+.... +++. .+..+..+|+++|.+|+++|||+++||++.
T Consensus 236 --~~~~~~~~~~v~p~~----------------------~~~~-~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~------ 284 (458)
T 3hsi_A 236 --SAVKLPNVLSVSPLF----------------------GLGA-SGNELNQVIEDLFLQVQKKLVICTPYFNFP------ 284 (458)
T ss_dssp --SCBSSCSSCEEEEEE----------------------EESS-SSCHHHHHHHHHHHTCSSEEEEECSSSCCC------
T ss_pred --ccCCCCceEEEecCC----------------------CCCC-chhHHHHHHHHHHHhcccEEEEEEeccCCC------
Confidence 000111223443211 1111 136789999999999999999999999942
Q ss_pred cccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCC----CCchhHHHHHHHHHHHH--H---HHHHHHHHHHHH
Q 045478 579 YKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGN----PNSAAVQEILYWQGQTM--S---MMYKIVAQALQD 649 (852)
Q Consensus 579 ~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~----~~~~~~~~~~~~~~~t~--~---~~~~~i~~~L~~ 649 (852)
..+..+|..+ +.+||+|+||+|.....+ ++...+ .+....+ . ..+..-++.|.+
T Consensus 285 -----------~~~~~aL~~A--a~rGV~VrIi~~~~~and~y~~~~~~~~----~~~~~~~lye~~~~~f~~~~~~l~~ 347 (458)
T 3hsi_A 285 -----------RTLQHKIATL--LENGKRVEIIVGDKVANDFYIPPEQPFK----MAGALPYLYESNLRRFCEKFETQIE 347 (458)
T ss_dssp -----------HHHHHHHHHH--HTTTCEEEEEEECGGGSTTCCCTTSCCC----GGGGHHHHHHHHHHHHHHHTHHHHH
T ss_pred -----------HHHHHHHHHH--HHCCCeEEEEECCccccCCccCCcchhh----hhcchHHHHHHhhhhhHHHHHHHHh
Confidence 2344555555 358899999999753111 121100 1111110 0 000011345677
Q ss_pred CC---CCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEeeEEEEcceeEEecCcCcccCCC
Q 045478 650 NG---LSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAKGMIVDDEYVIMGSANINQRSL 726 (852)
Q Consensus 650 ~G---v~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm 726 (852)
+| +++ |. |. ..++|+|+|||||++++|||+|||.||+
T Consensus 348 ~G~i~V~i----------~~----------~~--------------------~~~lHaK~~vvD~~~~~vGS~N~d~RS~ 387 (458)
T 3hsi_A 348 SGQLVVRL----------WR----------DG--------------------DNTYHLKGVWVDDRYILLTGNNLNPRAW 387 (458)
T ss_dssp HTSEEEEE----------EC----------BT--------------------TBEECCCEEEETTTEEEEECCCCSHHHH
T ss_pred CCCeEEEE----------Ee----------cC--------------------CCceeEEEEEECCeEEEecCCCCCcchh
Confidence 77 432 21 22 2599999999999999999999999999
Q ss_pred CCCCCceeEEEEecCc
Q 045478 727 EGSRDTEIAMGAYQPH 742 (852)
Q Consensus 727 ~~n~DsEi~v~i~d~~ 742 (852)
..| +|+++.|+|++
T Consensus 388 ~lN--~E~~~~i~~~~ 401 (458)
T 3hsi_A 388 RLD--AENGLLIYDPQ 401 (458)
T ss_dssp HTC--EEEEEEEECTT
T ss_pred hhC--ceeEEEEeCCc
Confidence 855 99999999985
|
| >1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=230.94 Aligned_cols=140 Identities=14% Similarity=0.176 Sum_probs=106.2
Q ss_pred hhhHHHHHHHHHhccc-----eEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccc
Q 045478 239 GQCWEEICHAVLEARH-----LIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNL 313 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~ 313 (852)
.+.|+.+++.|++|++ +|+|+.|.+.+ +..+.++|++||++||+|+||+ |..+....
T Consensus 346 ~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~~----------------d~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~- 407 (687)
T 1xdp_A 346 YHTFEHVLELLRQASFDPSVLAIKINIYRVAK----------------DSRIIDSMIHAAHNGKKVTVVV-ELQARFDE- 407 (687)
T ss_dssp TBCTHHHHHHHHHHHHCTTEEEEEEEESSCCT----------------TCHHHHHHHHHHHTTCEEEEEE-CTTCSSTT-
T ss_pred hhhhhhHHHHHHHHhhCCcceEEEEEeeeecC----------------cHHHHHHHHHHHhcCCEEEEEE-CCCcccch-
Confidence 4568999999999997 99998887643 2599999999999999999997 87652210
Q ss_pred cccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceE---EEEcccC
Q 045478 314 FIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKIS---AFIGGLD 390 (852)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~v---AfvGG~n 390 (852)
.......+.|..+||+++.+. + .+++|+|++|||++..| .+ +|+||.|
T Consensus 408 ---------~~n~~~~~~L~~aGV~V~~~~--~--------------~~k~H~Ki~VID~re~~----~i~~~a~iGS~N 458 (687)
T 1xdp_A 408 ---------EANIHWAKRLTEAGVHVIFSA--P--------------GLKIHAKLFLISRKENG----EVVRYAHIGTGN 458 (687)
T ss_dssp ---------TTTTTTTHHHHHHTCEEEECC--T--------------TCEECCEEEEEEEEETT----EEEEEEEEESSC
T ss_pred ---------hhHHHHHHHHHHCCCEEEEec--C--------------CccccceEEEEEeccCC----eEEEEEEEeCCc
Confidence 001234566788999997542 1 24689999999942000 15 9999999
Q ss_pred CCCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh-HHHHHHHHHHHHHhhh
Q 045478 391 LCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP-AAYDILINFEQRWRRS 457 (852)
Q Consensus 391 l~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~ 457 (852)
+.. |.. ..|+|+++.++|| +|.++...|...|...
T Consensus 459 ~d~-rs~-------------------------------~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s 494 (687)
T 1xdp_A 459 FNE-KTA-------------------------------RLYTDYSLLTADARITNEVRRVFNFIENPY 494 (687)
T ss_dssp SCT-TGG-------------------------------GTEEEEEEEECCHHHHHHHHHHHHHHHCTT
T ss_pred CCc-chh-------------------------------hhcceEEEEEeCHHHHHHHHHHHHHHHhhc
Confidence 877 310 2589999999987 6899999999999853
|
| >2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=217.93 Aligned_cols=267 Identities=13% Similarity=0.174 Sum_probs=177.8
Q ss_pred hhhHHHHHHHHHhccc-----eEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccc
Q 045478 239 GQCWEEICHAVLEARH-----LIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNL 313 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~ 313 (852)
.+.|+.++++|++|++ +|.++.|++.. +..|.++|++||++||+|++|+ | .++....
T Consensus 351 ~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~----------------ds~Iv~ALi~AA~rGv~V~vLv-e-l~arfde 412 (705)
T 2o8r_A 351 YYTYDYVVRLLMEAAISPDVSEIRLTQYRVAE----------------NSSIISALEAAAQSGKKVSVFV-E-LKARFDE 412 (705)
T ss_dssp TBCSHHHHHHHHHHHTCTTEEEEEEEESCCCS----------------CCHHHHHHHHHHHTTCEEEEEE-C-CCSCC--
T ss_pred hHhHHHHHHHHHHhccCCCceEEEEEEEEEcC----------------CHHHHHHHHHHHHCCCEEEEEE-e-CCCCcch
Confidence 5679999999999999 99999998643 2699999999999999999997 8 5543210
Q ss_pred cccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCC--CCCCCCceEEEEcccCC
Q 045478 314 FIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTP--ASGNNRKISAFIGGLDL 391 (852)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~--~~~~~~~~vAfvGG~nl 391 (852)
..+....+.|+.+||+|... . ..+++|+|++|||++ ..|.-+ ..+++|.-|+
T Consensus 413 ---------e~ni~wa~~Le~aGv~Vv~g--~--------------~~lk~H~Ki~lIdrr~~~~g~~~-~y~~igtGN~ 466 (705)
T 2o8r_A 413 ---------ENNLRLSERMRRSGIRIVYS--M--------------PGLKVHAKTALILYHTPAGERPQ-GIALLSTGNF 466 (705)
T ss_dssp -----------CHHHHHHHHHHTCEEEEC--C--------------TTCCBCCCEEEEEECCCSSSCCC-EEEEEESSCS
T ss_pred ---------hhhHHHHHHHHHCCCEEEEc--c--------------CCCCceeEEEEEecccccCCcee-EEEeccccce
Confidence 01235678899999998742 1 236899999999985 222211 1233332222
Q ss_pred CCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh-HHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 045478 392 CDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP-AAYDILINFEQRWRRSTKWREFRLKKVTH 470 (852)
Q Consensus 392 ~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp-aa~dl~~~F~~rW~~~~~~~~~~~~~~~~ 470 (852)
.+. .-.-|.|+++...+| ++.|+...|...|... .
T Consensus 467 n~~--------------------------------tariy~D~~l~t~~~~i~~dl~~vF~~~tg~~--~---------- 502 (705)
T 2o8r_A 467 NET--------------------------------TARIYSDTTLMTANTDIVHDVYRLFRILDGDP--E---------- 502 (705)
T ss_dssp SCC--------------------------------CSSCEEEEEEEECCHHHHHHHHHHHHHHTTCC--C----------
T ss_pred eee--------------------------------EEEEEeeeeeeecChHHHHHHHHHHHHHhCCC--C----------
Confidence 220 012467777777775 6799999996655421 0
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCceeeEEecccCCCCCCCCCChHHHHHhhhhcccCccchhHHHHH
Q 045478 471 WYDDSLINLDRIGITPSTGPHSYKPTRAGSEKETENWHIQVFRSIDSGSVKGFPKDVEEAVAQNLVCAKDLKVDKSIHSA 550 (852)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~a 550 (852)
+ ... .|++-+ |.+ ....|.+.
T Consensus 503 -------------------~--------------~~~-~~l~~s---------P~~----------------~~~~i~~~ 523 (705)
T 2o8r_A 503 -------------------P--------------ARF-SRLLVA---------RYN----------------MGEAITNL 523 (705)
T ss_dssp -------------------C--------------SCC-SSCEET---------TTT----------------HHHHHHHH
T ss_pred -------------------C--------------CCc-eEEEEC---------Cch----------------HHHHHHHH
Confidence 0 000 233321 221 13678899
Q ss_pred HHHHHHhccc----eEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEe-------cCCCCCC
Q 045478 551 YVKAIRSAQH----FIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVI-------PMWPEGN 619 (852)
Q Consensus 551 yl~aI~~Ak~----~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~Ivl-------P~~peg~ 619 (852)
+..+|.+|++ +|+|.++| + |+. .+..++.+|. .+||+|.|++ |..| .
T Consensus 524 i~~eI~~Ak~G~~a~I~ik~n~-l------~D~-----------~ii~aL~~As--~~GV~V~LIVRGiC~L~Pgv~--~ 581 (705)
T 2o8r_A 524 IEREIENVKRGKRGYMLLKMNG-L------QDK-----------NVITQLYRAS--EAGVEIDLIVRGICCLVPDMP--Q 581 (705)
T ss_dssp HHHHHHHHHTTCCCEEEEEESC-B------CCH-----------HHHHHHHHHH--HTTCEEEEEESSCBCSCCSSG--G
T ss_pred HHHHHHHHhcCCCCEEEEEcCC-C------CCH-----------HHHHHHHHHH--HCCCeEEEEEccccccCCCCC--C
Confidence 9999999999 99999998 4 222 3334444442 3789999999 4211 0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhccee
Q 045478 620 PNSAAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFM 699 (852)
Q Consensus 620 ~~~~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (852)
++ -+.+... +. .
T Consensus 582 sd---------------------------------------ni~V~Si---------vg--------------------r 593 (705)
T 2o8r_A 582 SR---------------------------------------NIRVTRL---------VD--------------------M 593 (705)
T ss_dssp GT---------------------------------------TEEEEEC---------CS--------------------S
T ss_pred CC---------------------------------------CeEEEee---------HH--------------------H
Confidence 00 0111110 00 1
Q ss_pred EEEEeeEEEE---cceeEEecCcCcccCCCCCCCCceeEEEEecCccc
Q 045478 700 IYVHAKGMIV---DDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYT 744 (852)
Q Consensus 700 iyvHSKlmIV---DD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~ 744 (852)
..=|+|+++. ||.+++||||||+.|||..| .|+++.|+|+++.
T Consensus 594 ~Leh~RIy~f~~gd~~~~~IGSAn~m~Rnl~~r--~Ev~~~i~d~~~~ 639 (705)
T 2o8r_A 594 YLEHSRIWCFHNGGKEEVFISSADWMKRNLYNR--IETACPVLDPTLR 639 (705)
T ss_dssp SEECCCEEEECGGGSCEEEEESCCBCHHHHHTS--BCEEEECCSHHHH
T ss_pred HHhcCEEEEEECCCCcEEEEeccccchhhhhhe--eEEEEEEcCHHHH
Confidence 2458899999 99999999999999999855 9999999998543
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-20 Score=177.86 Aligned_cols=127 Identities=20% Similarity=0.349 Sum_probs=105.5
Q ss_pred eeeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCC
Q 045478 23 VFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCEN 102 (852)
Q Consensus 23 ~~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~n 102 (852)
++++|.|+|+|++|++|+++|..++.. +|.+ ...++||||+|.+++.+++||+++.++.|
T Consensus 25 ~~~~g~L~V~VieA~~L~~~D~~~~~~--~f~~------------------~~g~sDPYv~v~l~~~~~~kT~v~~ktln 84 (157)
T 2fk9_A 25 MKFNGYLRVRIGEAVGLQPTRWSLRHS--LFKK------------------GHQLLDPYLTVSVDQVRVGQTSTKQKTNK 84 (157)
T ss_dssp CCEEEEEEEEEEEEECCCCCHHHHHTT--TSSS------------------SCCCCCEEEEEEETTEEEEECCCCSSCSS
T ss_pred ccCccEEEEEEEEEECCCCcccccccc--cccc------------------CCCCCCeEEEEEECCEeeEEeeecCCCCC
Confidence 368999999999999999988543211 1210 01128999999999988899999999999
Q ss_pred CeeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCC----CceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 103 PFWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCG----NEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 103 P~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g----~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
|+|||+|.|.+.. ...+.|+|+|++.++ +++||++.||+.++..+ ...+.||+|. +.|+|+|+++|
T Consensus 85 P~WNE~F~f~v~~-~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~--------~~G~i~l~l~~ 155 (157)
T 2fk9_A 85 PTYNEEFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE--------PEGKVFVVITL 155 (157)
T ss_dssp CEEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB--------SSCEEEEEEEE
T ss_pred CccCcEEEEEcCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC--------CCcEEEEEEEE
Confidence 9999999999864 568899999999998 99999999999999855 6789999993 36899999998
Q ss_pred e
Q 045478 178 K 178 (852)
Q Consensus 178 ~ 178 (852)
.
T Consensus 156 ~ 156 (157)
T 2fk9_A 156 T 156 (157)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=163.35 Aligned_cols=123 Identities=24% Similarity=0.289 Sum_probs=108.6
Q ss_pred eeeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCC
Q 045478 23 VFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCEN 102 (852)
Q Consensus 23 ~~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~n 102 (852)
....|.|.|+|++|++|++++..+. +||||+|.+++.+ .||+++.++.|
T Consensus 9 ~~~~~~L~v~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~-~kT~~~~~t~n 57 (133)
T 2ep6_A 9 VKDVGILQVKVLKAADLLAADFSGK------------------------------SDPFCLLELGNDR-LQTHTVYKNLN 57 (133)
T ss_dssp CCCSEEEEEEEEEEESCCCSSSSSC------------------------------CCEEEEEEETTEE-EECCCCSSCSS
T ss_pred cCCceEEEEEEEeeECCCCCCCCCC------------------------------cCeEEEEEECCEE-EEeeeecCCCC
Confidence 3468999999999999999987776 8999999999876 79999999999
Q ss_pred CeeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 103 PFWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 103 P~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
|.|||+|.|.+.+....+.|+|+|.+.++ +++||++.|++.++..|. ..|++|....++. +..|+|+|+++|..
T Consensus 58 P~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 58 PEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLIY 132 (133)
T ss_dssp CCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEEE
T ss_pred CccccEEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEEEEEEEe
Confidence 99999999999887788999999999987 999999999999998764 5899997665443 57899999999863
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-18 Score=162.78 Aligned_cols=124 Identities=20% Similarity=0.357 Sum_probs=109.1
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCe
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPF 104 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~ 104 (852)
..|.|.|+|++|++|+.++. +. +||||+|.+.+.+ .||+++.++.||+
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~------------------------------~dpyv~v~~~~~~-~kT~v~~~t~nP~ 52 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GK------------------------------PDPIVSVIFKDEK-KKTKKVDNELNPV 52 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SC------------------------------CCEEEEEECSSCE-EECCCCCSCSSCE
T ss_pred CCcEEEEEEEEeeCCCCCCC-CC------------------------------CCeEEEEEECCEe-EEeeeecCCCCCc
Confidence 47899999999999999887 65 8999999999876 8999999999999
Q ss_pred eeeEEEEeecC----CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeee---eccCCCCCCCCCCEEEEEEE
Q 045478 105 WDEHFCVPVAH----SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFP---IAGSYGKNLKPFPQLHVSMQ 176 (852)
Q Consensus 105 WnE~f~~~~~~----~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~---L~~~~g~~~k~~g~l~l~l~ 176 (852)
|||+|.|.+.. ....+.|+|+|++.++ +++||.+.|++.++..+...+.|++ |.+..++ +..|+|+|+++
T Consensus 53 wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~--~~~G~l~l~~~ 130 (140)
T 2dmh_A 53 WNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ--DTGATIDLVIG 130 (140)
T ss_dssp EEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCC--EEEEEEEEEEE
T ss_pred cCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCC--CCCCEEEEEEE
Confidence 99999999865 3577899999999987 8999999999999998888899988 7665553 34699999999
Q ss_pred eeecCC
Q 045478 177 YKPIGQ 182 (852)
Q Consensus 177 f~~~~~ 182 (852)
|.|...
T Consensus 131 ~~p~~~ 136 (140)
T 2dmh_A 131 YDPPSG 136 (140)
T ss_dssp ECCCBS
T ss_pred EECCCC
Confidence 999654
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.4e-18 Score=162.30 Aligned_cols=129 Identities=20% Similarity=0.396 Sum_probs=105.3
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCC
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENP 103 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP 103 (852)
+++|+|.|+|++|++|+++|.+++.. +.+ ......+||||+|.+++..+++|+++.++.||
T Consensus 3 ~~~g~L~v~v~~a~~L~~~d~~~~~~---~g~----------------~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP 63 (136)
T 1gmi_A 3 VFNGLLKIKICEAVSLKPTAWSLRDA---VGP----------------RPQTFLLDPYIALNVDDSRIGQTATKQKTNSP 63 (136)
T ss_dssp CEEEEEEEEEEEEESCCCCHHHHCC----CCS----------------SCCCCCCCEEEEEEETTEEEEECCCCSSCSSC
T ss_pred ccceEEEEEEEeCcCCCCcccccccc---ccc----------------ccCCcCcCcEEEEEECCeEeeeeeEECCCcCC
Confidence 47999999999999999988654210 000 00112289999999999888999999999999
Q ss_pred eeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCC--CceeeeeeeccCCCCCCCCCCEEEEEEEeeec
Q 045478 104 FWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCG--NEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPI 180 (852)
Q Consensus 104 ~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g--~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~ 180 (852)
+|||+|.|.+... ..+.|+|+|++.++ +++||.+.|++.++..+ ...+.|++|. +.|+|+|+++|.+.
T Consensus 64 ~WnE~f~f~v~~~-~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 64 AWHDEFVTDVCNG-RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEEEEEEEEEE-CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEE
T ss_pred ccCCEEEEEecCC-CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC--------CCeEEEEEEEEEec
Confidence 9999999998755 78999999999888 89999999999999864 3458999882 36899999999763
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.6e-18 Score=163.52 Aligned_cols=124 Identities=26% Similarity=0.358 Sum_probs=101.9
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC-----eeEEEeeeecC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG-----ATVAQTRVISN 99 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~-----~~~~rT~vi~~ 99 (852)
..|.|.|+|++|++|++++.++. +||||+|.+.. ....||+++.+
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~~~~kT~v~~~ 67 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGA------------------------------SDPYVRVTLYDPMNGVLTSVQTKTIKK 67 (153)
T ss_dssp TCEEEEEEEEEEESCC-------------------------------------CCEEEEEEEEETTTEEEEEEECCCCSS
T ss_pred CccEEEEEEEEeeCCCCCCCCCC------------------------------CCcEEEEEEECCCCccceeeeCccccC
Confidence 46899999999999999887776 89999999974 35689999999
Q ss_pred CCCCeeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCce------eeeeeeccCCCCCCCCCCEEE
Q 045478 100 CENPFWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEV------DDWFPIAGSYGKNLKPFPQLH 172 (852)
Q Consensus 100 s~nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~------~~w~~L~~~~g~~~k~~g~l~ 172 (852)
+.||.|||+|.|.+......+.|+|+|++.++ +++||++.|++.++..+... ..||+|....++ .+..|+|+
T Consensus 68 t~nP~wne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~i~ 146 (153)
T 3b7y_A 68 SLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHK-SRVKGYLR 146 (153)
T ss_dssp CSSCCCCEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTT-CCCCSEEE
T ss_pred CCCCCCCCEEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCC-CCcceEEE
Confidence 99999999999999887788999999999987 99999999999999876542 589999554433 36789999
Q ss_pred EEEEeee
Q 045478 173 VSMQYKP 179 (852)
Q Consensus 173 l~l~f~~ 179 (852)
|+++|.|
T Consensus 147 l~l~~~P 153 (153)
T 3b7y_A 147 LKMTYLP 153 (153)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 9999986
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=163.10 Aligned_cols=123 Identities=23% Similarity=0.452 Sum_probs=109.5
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeec-CCCCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVIS-NCENP 103 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~-~s~nP 103 (852)
..|.|.|+|++|++|++++.++. +||||+|.+.+.. .||+++. ++.||
T Consensus 8 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~-~kT~~~~~~~~nP 56 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDADFLNN------------------------------MDPYVQLTCRTQD-QKSNVAEGMGTTP 56 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCS------------------------------SCCCEEEESSSCE-EECCCCTTCCSSC
T ss_pred CcEEEEEEEEeccCCCCcccCCC------------------------------cCceEEEEECCcc-ceeEeccCCCCCC
Confidence 58999999999999999987766 8999999999876 6999998 89999
Q ss_pred eeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceec-cCCCceeeeeeeccCCCCCCCCCCEEEEEEEeeecC
Q 045478 104 FWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKI-LCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIG 181 (852)
Q Consensus 104 ~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l-~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~~ 181 (852)
.|||+|.|.+......+.|+|+|++.++ +++||.+.|++.++ ..+...+.|++|. ..+ +..|+|+|+++|.|..
T Consensus 57 ~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~---~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 57 EWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KDE---EYKGEIWVALSFKPSG 132 (136)
T ss_dssp EEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ETT---EEEEEEEEEEEEEECC
T ss_pred ccCcEEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cCC---ccCEEEEEEEEEEeCC
Confidence 9999999999987788999999999987 99999999999999 4566678999996 333 4679999999999976
Q ss_pred C
Q 045478 182 Q 182 (852)
Q Consensus 182 ~ 182 (852)
.
T Consensus 133 ~ 133 (136)
T 1wfj_A 133 P 133 (136)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-17 Score=158.73 Aligned_cols=119 Identities=21% Similarity=0.388 Sum_probs=104.3
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
.|.|.|+|++|++|+++|.++. +||||++.+++.. .||+++.++.||.|
T Consensus 16 ~~~L~V~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~-~kT~~~~~t~nP~W 64 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAKDKTGS------------------------------SDPYVTVQVGKTK-KRTKTIYGNLNPVW 64 (148)
T ss_dssp CEEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEETTEE-EECCCCCSCSSCEE
T ss_pred ccEEEEEEEeeeCCCCCCCCCC------------------------------cCeEEEEEECCEE-EECCccCCCCCCCc
Confidence 7999999999999999988776 9999999998766 79999999999999
Q ss_pred eeEEEEeecCCCceEEEEEEecCCC-----------C-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEE
Q 045478 106 DEHFCVPVAHSVVNLEFHVKDNDIL-----------G-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHV 173 (852)
Q Consensus 106 nE~f~~~~~~~~~~l~~~V~d~d~~-----------~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l 173 (852)
||+|.|.+..+...+.|+|+|.+.. + +++||++.|++.++. ...+.|++|....+ ..+..|+|+|
T Consensus 65 ne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~-~~~~~G~i~l 141 (148)
T 3kwu_A 65 EENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTD-KSAVSGAIRL 141 (148)
T ss_dssp EEEEEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSST-TCCCCCEEEE
T ss_pred ccEEEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCC-CCCCceEEEE
Confidence 9999999988888899999999985 5 999999999999983 45789999964333 2356799999
Q ss_pred EEEee
Q 045478 174 SMQYK 178 (852)
Q Consensus 174 ~l~f~ 178 (852)
+++|.
T Consensus 142 ~l~~e 146 (148)
T 3kwu_A 142 HISVE 146 (148)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.4e-17 Score=162.52 Aligned_cols=124 Identities=25% Similarity=0.381 Sum_probs=100.0
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe-----eEEEeeeecCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA-----TVAQTRVISNC 100 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~-----~~~rT~vi~~s 100 (852)
.|.|.|+|++|++|++++.++. +||||+|.+.+. ...||+++.++
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~------------------------------~DPyv~v~l~~~~~~~~~~~kT~v~~~t 56 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGA------------------------------SDPYVRVTLYDPMSGILTSVQTKTIKKS 56 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCC------------------------------CCEEEEEEEEETTTEEEEEEECCCCSSC
T ss_pred cEEEEEEEEEeeCCCCcCCCCC------------------------------cCcEEEEEEECCCCCcccceeCceECCC
Confidence 5899999999999999988776 999999999741 45899999999
Q ss_pred CCCeeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCce-e-----eeeeeccCCCCCCCCCCEEEE
Q 045478 101 ENPFWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEV-D-----DWFPIAGSYGKNLKPFPQLHV 173 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~-~-----~w~~L~~~~g~~~k~~g~l~l 173 (852)
.||.|||+|.|.+......|.|+|||.+.++ +++||.+.|++.++..+... + .||+|....++ .+..|+|+|
T Consensus 57 ~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l 135 (176)
T 3m7f_B 57 LNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK-SRVKGYLRL 135 (176)
T ss_dssp SSCEEEEEEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTT-CCCCSEEEE
T ss_pred CCCcccceEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCC-CccCEEEEE
Confidence 9999999999999877778999999999987 89999999999999876433 2 79999654333 356899999
Q ss_pred EEEeeec
Q 045478 174 SMQYKPI 180 (852)
Q Consensus 174 ~l~f~~~ 180 (852)
+++|.|.
T Consensus 136 ~l~~~p~ 142 (176)
T 3m7f_B 136 KMTYLPK 142 (176)
T ss_dssp EEEECC-
T ss_pred EEEEEeC
Confidence 9999997
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=153.71 Aligned_cols=118 Identities=21% Similarity=0.336 Sum_probs=100.5
Q ss_pred eeEEEEEEEEecCCCCC---CCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe--eEEEeeeecCC
Q 045478 26 HGDLDLSILEAKSLPNM---DLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA--TVAQTRVISNC 100 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~--~~~rT~vi~~s 100 (852)
+|.|.|+|++|++|+++ +..+. +||||++.+.+. ...||+++.++
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~kT~v~~~t 51 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDT------------------------------PDPYVELFISTTPDSRKRTRHFNND 51 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCC------------------------------CCEEEEEECTTSTTCCEECCCCTTC
T ss_pred CcEEEEEEEeeeCCCCCCccccCCC------------------------------CCCEEEEEEccCCCceEEccccCCC
Confidence 58999999999999985 33444 899999999862 55899999999
Q ss_pred CCCeeeeEEEEeecC-CCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 101 ENPFWDEHFCVPVAH-SVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~-~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
.||.|||+|.|.+.. ....+.|+|+|++..++++||.+.|++.++..|...+.|++|.. ++.|.|+|+++..|
T Consensus 52 ~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~~g~i~~~le~~~ 125 (126)
T 1rlw_A 52 INPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLEVAS 125 (126)
T ss_dssp SSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEECCC
T ss_pred CCCcccceEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcCC------CceEEEEEEEEeCC
Confidence 999999999999954 45778999999998889999999999999999999999999942 34577887777554
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=9.2e-17 Score=159.52 Aligned_cols=130 Identities=22% Similarity=0.333 Sum_probs=105.2
Q ss_pred CCceeeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecC
Q 045478 20 DEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISN 99 (852)
Q Consensus 20 ~~~~~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~ 99 (852)
+......+.|.|+|++|++|++.+.+++ +||||+|.+++ .+.||+++.+
T Consensus 29 ~~~~~~~~~L~V~V~~A~~L~~~~~~~~------------------------------sDPYv~v~~~~-~~~kT~v~~~ 77 (173)
T 2nq3_A 29 MGSLTMKSQLQITVISAKLKENKKNWFG------------------------------PSPYVEVTVDG-QSKKTEKCNN 77 (173)
T ss_dssp --CCSCCEEEEEEEEEEEECCCC--CCC------------------------------CCEEEEEEETT-EEEECCCCSS
T ss_pred ccccCCceEEEEEEEEeECCCCcccCCC------------------------------CCeEEEEEECC-EEeEccccCC
Confidence 3334568999999999999995444443 89999999998 5589999999
Q ss_pred CCCCeeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCC-----ceeeeeeeccCCCCCCCCCCEEEE
Q 045478 100 CENPFWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGN-----EVDDWFPIAGSYGKNLKPFPQLHV 173 (852)
Q Consensus 100 s~nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~-----~~~~w~~L~~~~g~~~k~~g~l~l 173 (852)
+.||+|||+|.|.+. +...+.|+|||++.++ +++||++.|++.++..+. ....|++|....+ ..+..|+|++
T Consensus 78 tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~-~~~~~G~L~v 155 (173)
T 2nq3_A 78 TNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE-PTETIGDLSI 155 (173)
T ss_dssp CSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC-TTSEEEEEEE
T ss_pred CCCCeECCEEEEEeC-CCCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCC-CCcccEEEEE
Confidence 999999999999985 4778999999999987 899999999999987432 2367999976533 3356799999
Q ss_pred EEEeeecCC
Q 045478 174 SMQYKPIGQ 182 (852)
Q Consensus 174 ~l~f~~~~~ 182 (852)
.+.|.++..
T Consensus 156 ~l~~l~~~~ 164 (173)
T 2nq3_A 156 CLDGLQLES 164 (173)
T ss_dssp EEESEECC-
T ss_pred EEeeeecch
Confidence 999998844
|
| >4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.7e-17 Score=164.39 Aligned_cols=134 Identities=18% Similarity=0.202 Sum_probs=101.0
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
+..|+.|+++|++||++|+|+.|.|.. ..|.++|.+||+|||+||||+ |......
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~y~~~~-----------------~~i~~aL~~aa~rGV~Vrii~-D~~~~~~------- 99 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCLFAFSS-----------------PQLGRAVQLLHQRGVRVRVIT-DCDYMAL------- 99 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEESCBCC-----------------HHHHHHHHHHHHTTCEEEEEE-SSCCC---------
T ss_pred HHHHHHHHHHHHHhheEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCcEEEEE-ecccccc-------
Confidence 567999999999999999999987632 589999999999999999997 8632111
Q ss_pred ccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCC
Q 045478 319 GVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDT 398 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt 398 (852)
.......|...||+|+.... ...+|+|++|||++ ++|+||.|++...+.
T Consensus 100 ------~~~~~~~l~~~gi~v~~~~~----------------~~~~H~K~~viD~~--------~~~~GS~N~t~~~~~- 148 (196)
T 4ggj_A 100 ------NGSQIGLLRKAGIQVRHDQD----------------LGYMHHKFAIVDKK--------VLITGSLNWTTQAIQ- 148 (196)
T ss_dssp -------CCHHHHHHHTTCEEEECCS----------------SSCCCCEEEEETTT--------EEEEESCCBCHHHHH-
T ss_pred ------cHHHHHHHHhcCCCcccccc----------------cccccCcEEEEcce--------EEEecCccCChhhhc-
Confidence 11234567788999885432 13579999999998 999999999873221
Q ss_pred CCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeee-ChHHHHHHHHHHHHHhhhhh
Q 045478 399 PEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVE-GPAAYDILINFEQRWRRSTK 459 (852)
Q Consensus 399 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~-Gpaa~dl~~~F~~rW~~~~~ 459 (852)
..| +..+.+. +++|..+.+.|.+.|+....
T Consensus 149 ------------------------------~n~-E~~~~i~~~~~~~~~~~~F~~~W~~~~p 179 (196)
T 4ggj_A 149 ------------------------------NNR-ENVLIMEDTEYVRLFLEEFERIWEEFDP 179 (196)
T ss_dssp ------------------------------HCC-EEEEEECCHHHHHHHHHHHHHHHHHTCC
T ss_pred ------------------------------ccc-eeEEEEECHHHHHHHHHHHHHHHHhCCC
Confidence 112 3444455 45789999999999997543
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-16 Score=148.24 Aligned_cols=121 Identities=19% Similarity=0.314 Sum_probs=100.8
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC-eeEEEeeeecCCCCCe
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG-ATVAQTRVISNCENPF 104 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~-~~~~rT~vi~~s~nP~ 104 (852)
...|+|+|++|++|+++|.++. +||||+|.+.+ ....||+++.++.||.
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~------------------------------sDpyv~v~~~~~~~~~kT~v~~~t~nP~ 53 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRL------------------------------PDPFAKIVVDGSGQCHSTDTVKNTLDPK 53 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCC------------------------------CCEEEEEEETTTCCEEECCCCSSCSSCE
T ss_pred eEEEEEEEEEeECCCCCCCCCC------------------------------cCeEEEEEECCCCceEECCccCCCCCCC
Confidence 4679999999999999998776 99999999975 4568999999999999
Q ss_pred eeeEEEEeecCCCceEEEEEEecCCCC----CceeeeEeeeceecc-CCCceeeeeeeccCC-CCCCCCCCEEEEEEEe
Q 045478 105 WDEHFCVPVAHSVVNLEFHVKDNDILG----AELIGVVQIPVEKIL-CGNEVDDWFPIAGSY-GKNLKPFPQLHVSMQY 177 (852)
Q Consensus 105 WnE~f~~~~~~~~~~l~~~V~d~d~~~----~~~iG~~~i~l~~l~-~g~~~~~w~~L~~~~-g~~~k~~g~l~l~l~f 177 (852)
|||+|.|.+.... .+.|+|||++.++ +++||.+.|++..+. .+.....|++|.... ..+.+..|+|+|++++
T Consensus 54 wne~f~f~v~~~~-~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 54 WNQHYDLYVGKTD-SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp EEEEEEEEEETTC-CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred ccCEEEEEeCCCC-EEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 9999999997654 4999999999886 699999999999883 344456889996542 2334568999998875
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-16 Score=148.42 Aligned_cols=106 Identities=25% Similarity=0.397 Sum_probs=92.9
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecC
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISN 99 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~ 99 (852)
+..|.|.|+|++|++|++++..+. +||||+|.+.. ....||+++.+
T Consensus 28 ~~~~~L~v~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~~~kT~v~~~ 77 (149)
T 1a25_A 28 IDREVLIVVVRDAKNLVPMDPNGL------------------------------SDPYVKLKLIPDPKSESKQKTKTIKC 77 (149)
T ss_dssp ESSSEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEEESCTTCSSCEECCCCSS
T ss_pred ecCCEEEEEEEEeeCCCCCCCCCC------------------------------cCeEEEEEEECCCCCcceEecceeCC
Confidence 347899999999999999987766 89999999974 45689999999
Q ss_pred CCCCeeeeEEEEeecCC--CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccC
Q 045478 100 CENPFWDEHFCVPVAHS--VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGS 160 (852)
Q Consensus 100 s~nP~WnE~f~~~~~~~--~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~ 160 (852)
+.||.|||+|.|.+... ...|.|+|||.+.++ +++||.+.|++.++..+ ..+.||+|...
T Consensus 78 t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~ 140 (149)
T 1a25_A 78 SLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ 140 (149)
T ss_dssp CSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred CCCCcCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCC
Confidence 99999999999998764 357899999999987 89999999999999876 48899999653
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=143.36 Aligned_cols=105 Identities=19% Similarity=0.397 Sum_probs=90.9
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC----CeeEEEeeeecC
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS----GATVAQTRVISN 99 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~----~~~~~rT~vi~~ 99 (852)
...|.|.|+|++|++|+. +..+. +||||+|.+. .....||+++.+
T Consensus 17 ~~~~~L~V~V~~a~~L~~-~~~g~------------------------------~DPyv~v~l~~~~~~~~~~kT~v~~~ 65 (134)
T 2b3r_A 17 YRNGTLFIMVMHIKDLVT-EDGAD------------------------------PNPYVKTYLLPDTHKTSKRKTKISRK 65 (134)
T ss_dssp EETTEEEEEEEEEECCCC-TTSCC------------------------------CCEEEEEEEESCSSSCCCEECCCCCS
T ss_pred ecCCEEEEEEEEeeCCCC-CCCCC------------------------------CCeEEEEEEEcCCCCCceecCCcCcC
Confidence 467899999999999996 55554 8999999982 234589999999
Q ss_pred CCCCeeeeEEEEe-ecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeecc
Q 045478 100 CENPFWDEHFCVP-VAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAG 159 (852)
Q Consensus 100 s~nP~WnE~f~~~-~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~ 159 (852)
+.||+|||+|.|. +.. ....+.|+|+|.+.++ +++||++.|++.++..+...+.||+|..
T Consensus 66 t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 66 TRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp CSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred CCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 9999999999999 654 3468899999999988 8999999999999998888999999953
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=147.34 Aligned_cols=105 Identities=28% Similarity=0.466 Sum_probs=92.9
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--CeeEEEeeeecCCCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GATVAQTRVISNCEN 102 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~~~~rT~vi~~s~n 102 (852)
..+.|.|+|++|++|++++..+. +||||+|.+. +....||+++.++.|
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~kT~v~~~t~n 89 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGT------------------------------SDPYVKVFLLPDKKKKFETKVHRKTLN 89 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEEETTCCSCEECCCCTTCSS
T ss_pred CCCEEEEEEEEeECCCCccCCCC------------------------------cCeEEEEEEEcCCCceEeccccCCCCC
Confidence 35899999999999999987766 8999999994 234589999999999
Q ss_pred CeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeecc
Q 045478 103 PFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAG 159 (852)
Q Consensus 103 P~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~ 159 (852)
|.|||+|.|.+... ...+.|+|+|.+.++ +++||++.|++.++..|...+.|++|..
T Consensus 90 P~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 90 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp CEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred CcCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 99999999998653 467899999999987 9999999999999998888999999954
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=145.41 Aligned_cols=104 Identities=28% Similarity=0.469 Sum_probs=92.1
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--CeeEEEeeeecCCCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GATVAQTRVISNCEN 102 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~~~~rT~vi~~s~n 102 (852)
..|.|.|+|++|++|+.++..+. +||||+|.+. +....||+++.++.|
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------~dpyv~v~l~~~~~~~~kT~v~~~t~n 81 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGT------------------------------SDPYVKVFLLPDKKKKFETKVHRKTLN 81 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBC------------------------------CCEEEEEEEESCCSCCEECCCCCSCSS
T ss_pred CCCEEEEEEEEecCCCCCCCCCC------------------------------cCcEEEEEEECCCCccEECccCcCCCC
Confidence 35889999999999999887665 8999999993 334689999999999
Q ss_pred CeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 103 PFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 103 P~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
|.|||+|.|.+... ...+.|+|||.+.++ +++||++.|++.++..+...+.|++|.
T Consensus 82 P~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 82 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred CcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence 99999999998643 367899999999987 899999999999999998999999994
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-15 Score=147.45 Aligned_cols=108 Identities=25% Similarity=0.379 Sum_probs=86.4
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEE--CCee--EEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCL--SGAT--VAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l--~~~~--~~rT~vi~~s 100 (852)
..|.|.|+|++|++|++++..+. +||||+|.+ ++.. ..||+++.++
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~~~kT~v~~~t 77 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDVSGL------------------------------SDPYVKVNLYHAKKRISKKKTHVKKCT 77 (153)
T ss_dssp TTTEEEEEEEEEESCC------C------------------------------CCEEEEEEEEETTEEEEEEECCCCCSC
T ss_pred CCCEEEEEEEEeECCCCcCCCCC------------------------------CCeEEEEEEEeCCeEeceEecCcccCC
Confidence 36889999999999999887766 899999999 4442 5799999999
Q ss_pred CCCeeeeEEEEeecCCC---ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 101 ENPFWDEHFCVPVAHSV---VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~~---~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
.||.|||+|.|.+.... ..+.|+|+|.+.++ +++||.+.|++.+ .+...+.|++|+...+++
T Consensus 78 ~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~p~~~ 143 (153)
T 1w15_A 78 PNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICDFPRRQ 143 (153)
T ss_dssp SSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHHSTTCC
T ss_pred CCCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHhCCCCe
Confidence 99999999999987642 67899999999987 9999999999987 455677888887655543
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-15 Score=143.09 Aligned_cols=105 Identities=27% Similarity=0.387 Sum_probs=92.2
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--CeeEEEeeeecCCCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GATVAQTRVISNCEN 102 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~~~~rT~vi~~s~n 102 (852)
..+.|.|+|++|++|++++..+. +||||+|.+. +....||+++.++.|
T Consensus 24 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~kT~v~~~t~n 73 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKDFSGT------------------------------SDPFVKIYLLPDKKHKLETKVKRKNLN 73 (141)
T ss_dssp SSCCEEEEEEEEESCCCCSSSSC------------------------------CCEEEEEEEESCCSSEEECCCCTTCSS
T ss_pred CCCEEEEEEEEeECCCCCCCCCC------------------------------CCcEEEEEEECCCCccEeCceEcCCCC
Confidence 46889999999999999887765 8999999995 234689999999999
Q ss_pred CeeeeEEEEeecC----CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeecc
Q 045478 103 PFWDEHFCVPVAH----SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAG 159 (852)
Q Consensus 103 P~WnE~f~~~~~~----~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~ 159 (852)
|.|||+|.|.+.. ....+.|+|+|.+.++ +++||.+.|++.++..+...+.|++|..
T Consensus 74 P~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 135 (141)
T 2d8k_A 74 PHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP 135 (141)
T ss_dssp CCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred CccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence 9999999998533 2467899999999987 8999999999999998888899999954
|
| >1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-15 Score=143.84 Aligned_cols=135 Identities=16% Similarity=0.256 Sum_probs=105.7
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
+..++.+.++|++|+++|+|+.|.|.+ ..|.++|.+|++|||+||||+ |..++....
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~~-----------------~~i~~aL~~a~~rGV~Vril~-~~~~~~~~~----- 69 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFTA-----------------PDIMKALVAAKKRGVDVKIVI-DERGNTGRA----- 69 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBCC-----------------HHHHHHHHHHHHTTCEEEEEE-ESTTCCSHH-----
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeCC-----------------HHHHHHHHHHHHCCCEEEEEE-eCccccccc-----
Confidence 467899999999999999999887621 489999999999999999997 655332100
Q ss_pred ccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCC
Q 045478 319 GVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDT 398 (852)
Q Consensus 319 ~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt 398 (852)
.....+.|.+.|++++.+.. ...+|.|++|||++ ++++||.|++. +..
T Consensus 70 ------~~~~~~~L~~~gv~v~~~~~----------------~~~~H~K~~iiD~~--------~~~iGS~N~~~-~~~- 117 (155)
T 1byr_A 70 ------SIAAMNYIANSGIPLRTDSN----------------FPIQHDKVIIVDNV--------TVETGSFNFTK-AAE- 117 (155)
T ss_dssp ------HHHHHHHHHHTTCCEEEECS----------------SSCCCCCEEEETTT--------EEEEESCCBSH-HHH-
T ss_pred ------cHHHHHHHHHCCCeEEEcCC----------------cccccceEEEECCC--------EEEEECCCCCc-ccc-
Confidence 23456667788999886431 12679999999998 99999999987 321
Q ss_pred CCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh--HHHHHHHHHHHHHhhhh
Q 045478 399 PEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP--AAYDILINFEQRWRRST 458 (852)
Q Consensus 399 ~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp--aa~dl~~~F~~rW~~~~ 458 (852)
..|++..+.++|+ .+.++...|.+.|+.+.
T Consensus 118 ------------------------------~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~~ 149 (155)
T 1byr_A 118 ------------------------------TKNSENAVVIWNMPKLAESFLEHWQDRWNQGR 149 (155)
T ss_dssp ------------------------------HTSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred ------------------------------ccCcccEEEEcCcHHHHHHHHHHHHHHHHhCC
Confidence 2467889999994 78999999999998643
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=149.14 Aligned_cols=106 Identities=22% Similarity=0.348 Sum_probs=93.3
Q ss_pred eeeEEEEEEEEecCCCCCCC-cchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEeeeecC
Q 045478 25 LHGDLDLSILEAKSLPNMDL-ITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISN 99 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~vi~~ 99 (852)
..|.|.|+|++|++|+++|. .+. +||||+|.+... ...||+++.+
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~~g~------------------------------~DPyv~v~l~~~~~~~~~~kT~v~~~ 77 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGSKST------------------------------PAPYVKVYLLENGACIAKKKTRIARK 77 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC---CC------------------------------CEEEEEEEEEETTEEEEEEECCCCCS
T ss_pred CCCEEEEEEEEeeCCCCCCcCCCC------------------------------CCceEEEEEECCCccccceeCccCCC
Confidence 57899999999999999885 455 899999998642 3689999999
Q ss_pred CCCCeeeeEEEEeecCCCceEEEEEE-ecCCCC-CceeeeEeeeceeccCCCceeeeeeeccC
Q 045478 100 CENPFWDEHFCVPVAHSVVNLEFHVK-DNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGS 160 (852)
Q Consensus 100 s~nP~WnE~f~~~~~~~~~~l~~~V~-d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~ 160 (852)
+.||+|||+|.|.+......+.|+|| |.+.++ +++||.+.|++.++..+...+.||+|...
T Consensus 78 t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 78 TLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp CSSCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCCCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 99999999999999777788899999 999988 89999999999999988889999999643
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=145.98 Aligned_cols=107 Identities=23% Similarity=0.388 Sum_probs=91.4
Q ss_pred eeEEEEEEEEecCCCCCC-CcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCC
Q 045478 26 HGDLDLSILEAKSLPNMD-LITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNC 100 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s 100 (852)
.|.|.|+|++|++|+.++ ..+. +||||+|.+.. ....||+++.++
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t 71 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKR------------------------------SNPYVKTYLLPDKSRQGKRKTSIKRDT 71 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTB------------------------------CCEEEEEEEETCCSGGGEEECCCCSSC
T ss_pred CCEEEEEEEEecCCCCcccCCCC------------------------------CCeEEEEEEEcCCcccCccccccCCCC
Confidence 588999999999999887 3454 89999999963 236899999999
Q ss_pred CCCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCC
Q 045478 101 ENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYG 162 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g 162 (852)
.||.|||+|.|.+... ...+.|+|||.+.++ +++||++.|++.++..+...+.|++|....+
T Consensus 72 ~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~ 137 (148)
T 3fdw_A 72 VNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKIS 137 (148)
T ss_dssp SSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC--
T ss_pred CCCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCccc
Confidence 9999999999998764 346899999999987 8999999999999988878899999965443
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.9e-15 Score=156.69 Aligned_cols=126 Identities=25% Similarity=0.443 Sum_probs=108.7
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCEN 102 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~n 102 (852)
..|.|.|+|++|++|+++|..+. +||||+|.+.. ....||+++.++.|
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~------------------------------~dpyv~v~~~~~~~~~~~T~~~~~~~n 66 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGT------------------------------SDPYVKVFLLPDKKKKFETKVHRKTLN 66 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSS------------------------------CCEEEEEEEETCTTSCEECCCCCSCSS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC------------------------------CCeEEEEEEEcCCCceEeCCcccCCCC
Confidence 46899999999999999987766 99999999964 24589999999999
Q ss_pred CeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 103 PFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 103 P~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
|.|||+|.|.+... ...+.|+|+|.+.++ +++||++.|++.++..+...+.|++|....+......|.|.+.++|.
T Consensus 67 P~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~ 146 (284)
T 2r83_A 67 PVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYV 146 (284)
T ss_dssp CEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEE
T ss_pred CeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEec
Confidence 99999999998653 467899999999987 89999999999999988889999999765443335678999999998
Q ss_pred ec
Q 045478 179 PI 180 (852)
Q Consensus 179 ~~ 180 (852)
|.
T Consensus 147 p~ 148 (284)
T 2r83_A 147 PT 148 (284)
T ss_dssp TT
T ss_pred Cc
Confidence 64
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=139.24 Aligned_cols=102 Identities=19% Similarity=0.295 Sum_probs=88.0
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC---CeeEEEeeeecCCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS---GATVAQTRVISNCEN 102 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~---~~~~~rT~vi~~s~n 102 (852)
.+.|.|+|++|+ ++|..+. +||||+|.+. +....||+++.++.|
T Consensus 25 ~~~L~V~v~~a~---~~d~~g~------------------------------sDPyv~v~l~~~~~~~~~kT~v~~~tln 71 (138)
T 1wfm_A 25 KAELFVTRLEAV---TSNHDGG------------------------------CDCYVQGSVANRTGSVEAQTALKKRQLH 71 (138)
T ss_dssp TTEEEEEEEEEE---CCCCSSC------------------------------CCEEEEEEEEETTEEEEEECCCCCCCSS
T ss_pred CCEEEEEEEEEE---cCCCCCC------------------------------cceEEEEEEEcCCCcccEecccCcCCCC
Confidence 588999999999 4566665 8999999993 344589999999999
Q ss_pred CeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccC
Q 045478 103 PFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGS 160 (852)
Q Consensus 103 P~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~ 160 (852)
|+|||+|.|.+... ...|.|+|+|.|.++ +++||.+.|++.++..+...+.|++|...
T Consensus 72 P~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 72 TTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp EECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred CcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence 99999999998653 457899999999988 99999999999999877788999999643
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-15 Score=147.57 Aligned_cols=103 Identities=17% Similarity=0.307 Sum_probs=90.7
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC---e--eEEEeeeecCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG---A--TVAQTRVISNC 100 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~---~--~~~rT~vi~~s 100 (852)
.|.|.|+|++|++|+++|..+. +||||++++.. . ...||++++++
T Consensus 42 ~~~L~V~Vi~a~~L~~~d~~g~------------------------------sDPyVkv~l~~~~~~~~~~~kT~v~~~t 91 (155)
T 2z0u_A 42 NKQFAILIIQLSNLSALLQQQD------------------------------QKVNIRVAVLPCSESTTCLFRTRPLDAS 91 (155)
T ss_dssp TTEEEEEEEEEECGGGTCCSCC------------------------------SEEEEEEEEESCSCHHHHEEECCCEECC
T ss_pred CCEEEEEEEEccCcCCcccCCC------------------------------CCEEEEEEEecCCCCCccceeCCcCCCC
Confidence 5889999999999999987776 99999999965 2 35899999999
Q ss_pred CCCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceecc-CCCceeeeeeec
Q 045478 101 ENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKIL-CGNEVDDWFPIA 158 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~-~g~~~~~w~~L~ 158 (852)
.||+|||+|.|.+... ...+.|+|||.|.++ +++||.+.|++.++. .+....+||+|+
T Consensus 92 lnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 92 DTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp SSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred CCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 9999999999998653 457899999999988 899999999999996 467788999984
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.8e-16 Score=148.03 Aligned_cols=106 Identities=25% Similarity=0.398 Sum_probs=92.6
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe-------------e
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA-------------T 90 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~-------------~ 90 (852)
+..|.|.|+|++|++|++++..+. +||||+|.+.+. .
T Consensus 15 y~~~~L~V~v~~a~~L~~~d~~g~------------------------------~Dpyv~v~~~~~~~~~~~~~~~~~~~ 64 (142)
T 1rh8_A 15 YDLGNLIIHILQARNLVPRDNNGY------------------------------SDPFVKVYLLPGRGQVMVVQNASAEY 64 (142)
T ss_dssp EETTEEEEEEEEEESCCCCSSSSC------------------------------SCCEEEEEETTSSCCCEECCCCCHHH
T ss_pred EcCCEEEEEEEEecCCCCCCCCCC------------------------------CCceEEEEEecCCCcccccccccccc
Confidence 347899999999999999987776 899999999763 2
Q ss_pred EEEeeeecCCCCCeeeeEEEEe-ecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeecc
Q 045478 91 VAQTRVISNCENPFWDEHFCVP-VAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAG 159 (852)
Q Consensus 91 ~~rT~vi~~s~nP~WnE~f~~~-~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~ 159 (852)
..||+++.++.||.|||+|.|. +.. ....+.|+|+|.+.++ +++||.+.|++.++..+...+.||+|..
T Consensus 65 ~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 138 (142)
T 1rh8_A 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp HTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred eeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCc
Confidence 4799999999999999999997 442 3467899999999987 8999999999999988788899999954
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-15 Score=138.83 Aligned_cols=101 Identities=25% Similarity=0.443 Sum_probs=84.2
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC----CeeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS----GATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~----~~~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|++++..+. +||||++.+. +....||+++.++.
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~------------------------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~ 66 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRP------------------------------RNPYVKIYFLPDRSDKNKRRTKTVKKTL 66 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCC------------------------------BCEEEEEEEESSCSGGGEEECCCCSSBS
T ss_pred CCEEEEEEEEeeCCCCCCCCCC------------------------------CCCEEEEEEecCCCCCcceecccccCCC
Confidence 5889999999999999987776 8999999993 24568999999999
Q ss_pred CCeeeeEEEEeecC----CCceEEEEEEecCCCC---CceeeeEeeeceeccCCCceeeeeee
Q 045478 102 NPFWDEHFCVPVAH----SVVNLEFHVKDNDILG---AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 102 nP~WnE~f~~~~~~----~~~~l~~~V~d~d~~~---~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
||.|||+|.|.+.+ ....+.|+|+|.+.++ +++||.+.|++.++.... .++||+|
T Consensus 67 nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 67 EPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp SCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred CCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 99999999999643 2467899999999887 899999999999987544 8899998
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.9e-15 Score=142.74 Aligned_cols=104 Identities=25% Similarity=0.407 Sum_probs=90.9
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s 100 (852)
..|.|.|+|++|++|++++..+. +||||+|.+.+ ....||+++.++
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~~~kT~v~~~t 76 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGL------------------------------ADPYVKLHLLPGASKSNKLRTKTLRNT 76 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSC------------------------------CCEEEEEEEESCCSGGGEEECCCCCSC
T ss_pred CCCEEEEEEEEecCCCCCCCCCC------------------------------CCCEEEEEEEcCCCCcceeeCCcCCCC
Confidence 46889999999999999987665 89999999975 356899999999
Q ss_pred CCCeeeeEEEEe-ecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 101 ENPFWDEHFCVP-VAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 101 ~nP~WnE~f~~~-~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
.||.|||+|.|. +... ...+.|+|||.+.++ +++||.+.|++.++..+.....|++|.
T Consensus 77 ~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 139 (142)
T 2chd_A 77 RNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139 (142)
T ss_dssp SSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred CCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence 999999999998 5432 257899999999988 899999999999999888888888884
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=7e-15 Score=140.95 Aligned_cols=105 Identities=20% Similarity=0.289 Sum_probs=89.1
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--e--eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--A--TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~--~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|++++..+ +||||+|.+.. . ...||+++.++.
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~ 71 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-------------------------------SDPYVRMYLLPDKRRSGRRKTHVSKKTL 71 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-------------------------------CCEEEEEEEESCCCSSSCEECCCCCSCS
T ss_pred CCEEEEEEEEeECCCCCCCCC-------------------------------CCeeEEEEEEcCCCCCCcccCCccCCCC
Confidence 588999999999999887533 69999999942 2 458999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC---CceeeeEeeeceeccCCCceeeeeeeccCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG---AELIGVVQIPVEKILCGNEVDDWFPIAGSY 161 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~---~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~ 161 (852)
||+|||+|.|.+... ...|.|+|+|.+.++ +++||.+.|++.++..+...+.|++|....
T Consensus 72 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~ 137 (142)
T 2dmg_A 72 NPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS 137 (142)
T ss_dssp SCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSC
T ss_pred CCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCC
Confidence 999999999998642 357899999999875 369999999999998877889999996543
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-15 Score=142.02 Aligned_cols=106 Identities=24% Similarity=0.410 Sum_probs=90.2
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC----CeeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS----GATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~----~~~~~rT~vi~~s~ 101 (852)
.+.|.|+|++|++|++++..+. +||||+|.+. .....||+++.++.
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~~~kT~~~~~t~ 69 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRP------------------------------RNPYVKIYFLPDRSDKNKRRTKTVKKTL 69 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCC------------------------------CCEEEECCCSSCCSSSSCCBCCCCSSCS
T ss_pred CCEEEEEEEEccCCCCcCCCCC------------------------------CCCEEEEEEecCCCCCcceeCccccCCC
Confidence 5789999999999999987776 8999999993 23458999999999
Q ss_pred CCeeeeEEEEeecC----CCceEEEEEEecCCCC---CceeeeEeeeceeccCCCceeeeeeeccCCC
Q 045478 102 NPFWDEHFCVPVAH----SVVNLEFHVKDNDILG---AELIGVVQIPVEKILCGNEVDDWFPIAGSYG 162 (852)
Q Consensus 102 nP~WnE~f~~~~~~----~~~~l~~~V~d~d~~~---~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g 162 (852)
||+|||+|.|.+.+ ....+.|+|+|.+.++ +++||.+.|++.++.... .+.||+|.....
T Consensus 70 nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~ 136 (141)
T 1v27_A 70 EPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDS 136 (141)
T ss_dssp SCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSS
T ss_pred CCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECccccc
Confidence 99999999999533 2367899999999887 789999999999987544 889999976543
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=141.09 Aligned_cols=107 Identities=26% Similarity=0.460 Sum_probs=90.5
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecC
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISN 99 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~ 99 (852)
.-.|.|.|+|++|++|+.++ .+. +||||+|.+.. ....||+++.+
T Consensus 24 ~~~~~L~V~v~~a~~L~~~d-~g~------------------------------~Dpyv~v~l~~~~~~~~~~kT~v~~~ 72 (153)
T 3fbk_A 24 AQDRVLLLHIIEGKGLISKQ-PGT------------------------------CDPYVKISLIPEDSRLRHQKTQTVPD 72 (153)
T ss_dssp ESSSEEEEEEEEEESCCCCS-SSC------------------------------CCEEEEEEEESCSCCTTCEECCCCTT
T ss_pred CCCCEEEEEEEEeeCCCCCC-CCC------------------------------CCEEEEEEEEcCCCCccEEeccccCC
Confidence 34688999999999999988 454 89999999942 24589999999
Q ss_pred CCCCeeeeEEEEeec--CCCceEEEEEEecCCCC--CceeeeEeeeceeccC-CCceeeeeeeccCC
Q 045478 100 CENPFWDEHFCVPVA--HSVVNLEFHVKDNDILG--AELIGVVQIPVEKILC-GNEVDDWFPIAGSY 161 (852)
Q Consensus 100 s~nP~WnE~f~~~~~--~~~~~l~~~V~d~d~~~--~~~iG~~~i~l~~l~~-g~~~~~w~~L~~~~ 161 (852)
+.||.|||+|.|.+. .....+.|+|||.+.++ +++||.+.|++.++.. +...++||+|....
T Consensus 73 t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~ 139 (153)
T 3fbk_A 73 CRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH 139 (153)
T ss_dssp CSSCEEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT
T ss_pred CCCCccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChh
Confidence 999999999999983 34456999999999874 7999999999999984 78889999997643
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-15 Score=141.57 Aligned_cols=107 Identities=23% Similarity=0.361 Sum_probs=91.2
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|+.++..+. +||||+|.+.+ ....||+++.++.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~g~------------------------------~dpyv~v~~~~~~~~~~~~kT~~~~~t~ 64 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAMDIGGT------------------------------SDPYVKVWLMYKDKRVEKKKTVTKKRNL 64 (138)
T ss_dssp TTEEEEEEEEEESCCCCBTTTB------------------------------CCEEEEEEEEETTEEEEEEECCCCSSCS
T ss_pred CCeEEEEEEEeeCCCCcCCCCC------------------------------cCeEEEEEEEeCCCccceEeCccccCCC
Confidence 5889999999999999887766 89999999964 2468999999999
Q ss_pred CCeeeeEEEEeecCCC---ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAHSV---VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~~~---~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+.... ..+.|+|+|.+.++ +++||.+.|++.++. ...++|++|+...+++
T Consensus 65 nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~~~~~~~ 129 (138)
T 3n5a_A 65 NPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDMIARPRQP 129 (138)
T ss_dssp SCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHHHHSTTCC
T ss_pred CCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHHHhCCCCe
Confidence 9999999999987654 57899999999987 899999999998743 4467888887766654
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=137.51 Aligned_cols=104 Identities=26% Similarity=0.366 Sum_probs=88.1
Q ss_pred eeeEEEEEEEEecCCCCCCCc-chhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLI-TESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCE 101 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~ 101 (852)
..+.|.|+|++|++|++++.+ +. +||||+|.+.. ....||+++.++.
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~------------------------------~dpyv~v~~~~~~~~~~kT~v~~~t~ 69 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMT------------------------------SDPYIKMTILPEKKHKVKTRVLRKTL 69 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTB------------------------------CEEEEEEEEETTTCSEEECCCCSSCS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCC------------------------------CCCEEEEEEecCCCceEecCcCcCCC
Confidence 468899999999999999875 54 89999999963 3568999999999
Q ss_pred CCeeeeEEEEe-ecC---CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCc-eeeeeeec
Q 045478 102 NPFWDEHFCVP-VAH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNE-VDDWFPIA 158 (852)
Q Consensus 102 nP~WnE~f~~~-~~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~-~~~w~~L~ 158 (852)
||+|||+|.|. +.. ....+.|+|+|.+.++ +++||.+.|++.++..+.. ...|++|.
T Consensus 70 nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~ 132 (138)
T 1ugk_A 70 DPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp SCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred CCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhh
Confidence 99999999996 554 2357899999999987 8999999999999987644 45678884
|
| >4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-15 Score=153.59 Aligned_cols=154 Identities=14% Similarity=0.127 Sum_probs=107.3
Q ss_pred cchhhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccc
Q 045478 236 FRHGQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFI 315 (852)
Q Consensus 236 y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~ 315 (852)
|.+.+.++.|+++|++|+++|+|+.|.|.. ..|.++|++||+|||+||||+ |..++...
T Consensus 54 ~~~~~~~~~ii~~I~~A~~sI~i~~Y~~~~-----------------~~I~~aL~~Aa~RGV~VRii~-D~~~~~~~--- 112 (220)
T 4gel_A 54 HCSLRNVAKIVEQIDRAVYSIDLAIYTFTS-----------------LFLADSIKRALQRGVIIRIIS-DGEMVYSK--- 112 (220)
T ss_dssp TCHHHHHHHHHHHHHTCSSEEEEECSCBCC-----------------HHHHHHHHHHHHHTCEEEEEC-CTTTTTST---
T ss_pred cCcHHHHHHHHHHHHHhhhEEEEEEEEeCC-----------------HHHHHHHHHHHHcCCeEEEEE-echhhhhh---
Confidence 445788999999999999999999987632 589999999999999999997 87654321
Q ss_pred cccccccCCcHHHHhhhcCCCCEEEecCCCCC--Ccchhhhh--ccccccccCccceEEecCCCCCCCCceEEEEcccCC
Q 045478 316 KTEGVMQTHDEETRKFFKHSSVNCVLAPRYAS--NKLSIFKQ--QVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDL 391 (852)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~--~~~~~~~~--~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl 391 (852)
......+...++.+........ .+..++.. ...+.+.++|.|++|+|+. ++++||.|+
T Consensus 113 ----------~~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~--------~v~~GS~N~ 174 (220)
T 4gel_A 113 ----------GSQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYS--------IVISGSVNW 174 (220)
T ss_dssp ----------TCHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCC--------EEEEESCCB
T ss_pred ----------HHHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceeccccccc--------eEEecCccc
Confidence 1122334445555543221110 00000000 0112345788888888888 999999998
Q ss_pred CCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhhh
Q 045478 392 CDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTK 459 (852)
Q Consensus 392 ~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~ 459 (852)
+. +.. ...|.|+.+...|++|..+.+.|.+.|+....
T Consensus 175 t~-~s~------------------------------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~~ 211 (220)
T 4gel_A 175 TA-LGL------------------------------GGNWENCIITADDKLTATFQAEFQRMWRAFAK 211 (220)
T ss_dssp SH-HHH------------------------------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSEE
T ss_pred cc-ccc------------------------------ccCceEEEEEECHHHHHHHHHHHHHHHHhccC
Confidence 76 211 13678898888999999999999999986443
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-15 Score=141.51 Aligned_cols=109 Identities=27% Similarity=0.412 Sum_probs=88.2
Q ss_pred eeEEEEEEEEecCCCCC-CCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecCCCC
Q 045478 26 HGDLDLSILEAKSLPNM-DLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISNCEN 102 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~s~n 102 (852)
.|.|.|+|++|++|++. +..+. +.. ...+||||+|.+.. ....||+++.++.|
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g~--~~~----------------------~~~~dpyv~v~l~~~~~~~~kT~v~~~t~n 80 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDGS--RQD----------------------MAHSNPYVKICLLPDQKNSKQTGVKRKTQK 80 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCCS--SCT----------------------TCCCCCEEEEEEETCCSSCEECCCCCSCSS
T ss_pred CCEEEEEEEEEeCCCCccccccc--ccc----------------------CCCCCcEEEEEEEeCCCcceEeecccCCCC
Confidence 58999999999999983 43321 000 01289999999963 34589999999999
Q ss_pred CeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 103 PFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 103 P~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
|+|||+|.|.+... ...|.|+|+|.+.++ +++||.+.|++.++..+.....|++|.
T Consensus 81 P~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~ 140 (147)
T 2enp_A 81 PVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140 (147)
T ss_dssp CCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCB
T ss_pred CeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEee
Confidence 99999999998652 357899999999988 889999999999998777778899884
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-14 Score=139.95 Aligned_cols=106 Identities=25% Similarity=0.386 Sum_probs=89.4
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|++++.++. +||||+|.+.+ ....||+++.++.
T Consensus 36 ~~~L~V~v~~a~~L~~~d~~g~------------------------------~DPyv~v~l~~~~~~~~~~kT~v~~~t~ 85 (166)
T 2cm5_A 36 QGGLIVGIIRCVHLAAMDANGY------------------------------SDPFVKLWLKPDMGKKAKHKTQIKKKTL 85 (166)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEEETC---CCEEECCCCCSCS
T ss_pred CCEEEEEEEEeECCCCccCCCC------------------------------CCcEEEEEEECCCCccceEeCCcccCCC
Confidence 5889999999999999987766 89999999975 2568999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGK 163 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~ 163 (852)
||.|||+|.|.+... ...+.|+|+|.+.++ +++||.+.|++.++. ...+.|++|+...++
T Consensus 86 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~~~~~ 149 (166)
T 2cm5_A 86 NPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLKNKDK 149 (166)
T ss_dssp SCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHHCTTC
T ss_pred CCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCC--chhHHHHHHHhCCCC
Confidence 999999999998653 457899999999988 899999999998763 345667777655443
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-14 Score=139.13 Aligned_cols=104 Identities=30% Similarity=0.457 Sum_probs=86.6
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~s 100 (852)
..|.|.|+|++|++|++++..+. +||||+|.+.. ....||+++.++
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t 72 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGL------------------------------SDPYVKIHLMQNGKRLKKKKTTIKKNT 72 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEEEETTEEEEEEECCCCCSC
T ss_pred CCCEEEEEEEEeeCCCCccCCCC------------------------------CCeEEEEEEEeCCceeceeeCceecCC
Confidence 36899999999999999987766 89999999953 246899999999
Q ss_pred CCCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceecc------------CCCceeeeeeec
Q 045478 101 ENPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKIL------------CGNEVDDWFPIA 158 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~------------~g~~~~~w~~L~ 158 (852)
.||.|||+|.|.+... ...+.|+|+|.+.++ +++||.+.|++..+. .+..++.|++|.
T Consensus 73 ~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~ 146 (159)
T 1tjx_A 73 LNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ 146 (159)
T ss_dssp SSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred CCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECc
Confidence 9999999999998654 356899999999988 999999999998541 244556677664
|
| >1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=134.28 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchh
Q 045478 545 KSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAA 624 (852)
Q Consensus 545 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~ 624 (852)
.++.++++++|.+|+++|+|+++||.. ..+..++.++.+ +||+|+||++..+. ..
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~~------------------~~i~~aL~~a~~--rGV~Vril~~~~~~----~~- 67 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFTA------------------PDIMKALVAAKK--RGVDVKIVIDERGN----TG- 67 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBCC------------------HHHHHHHHHHHH--TTCEEEEEEESTTC----CS-
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeCC------------------HHHHHHHHHHHH--CCCEEEEEEeCccc----cc-
Confidence 468889999999999999999998841 235556666643 77999999995421 10
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEe
Q 045478 625 VQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHA 704 (852)
Q Consensus 625 ~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHS 704 (852)
+..+ ...+.|.+.|++++ ++. + ...+|+
T Consensus 68 ------~~~~-------~~~~~L~~~gv~v~--------~~~------------~-------------------~~~~H~ 95 (155)
T 1byr_A 68 ------RASI-------AAMNYIANSGIPLR--------TDS------------N-------------------FPIQHD 95 (155)
T ss_dssp ------HHHH-------HHHHHHHHTTCCEE--------EEC------------S-------------------SSCCCC
T ss_pred ------cccH-------HHHHHHHHCCCeEE--------EcC------------C-------------------cccccc
Confidence 1111 23677888998752 211 0 126899
Q ss_pred eEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecC
Q 045478 705 KGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQP 741 (852)
Q Consensus 705 KlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~ 741 (852)
|++||||+++++||+||+.||+..| .|+++.+.++
T Consensus 96 K~~iiD~~~~~iGS~N~~~~~~~~n--~E~~~~i~~~ 130 (155)
T 1byr_A 96 KVIIVDNVTVETGSFNFTKAAETKN--SENAVVIWNM 130 (155)
T ss_dssp CEEEETTTEEEEESCCBSHHHHHTS--CEEEEEEESC
T ss_pred eEEEECCCEEEEECCCCCccccccC--cccEEEEcCc
Confidence 9999999999999999999999855 9999999884
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-13 Score=145.87 Aligned_cols=124 Identities=28% Similarity=0.352 Sum_probs=100.7
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--CeeEEEeeeecCCCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GATVAQTRVISNCEN 102 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~~~~rT~vi~~s~n 102 (852)
-.|.|.|+|++|++|+++|..+. +||||+|.+. +....||+++.++.|
T Consensus 18 ~~~~L~v~v~~a~~L~~~d~~g~------------------------------~dPyv~v~l~~~~~~~~kT~v~~~t~n 67 (296)
T 1dqv_A 18 GSDQLVVRILQALDLPAKDSNGF------------------------------SDPYVKIYLLPDRKKKFQTKVHRKTLN 67 (296)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSC------------------------------CCEEEEEECTTSTTSCEECCCCCSCSS
T ss_pred CCCEEEEEEEEeECCCCcCCCCC------------------------------cCeEEEEEEEcCCCeeEeCCccCCCCC
Confidence 35889999999999999988776 9999999993 345589999999999
Q ss_pred CeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeee-ceeccC-CCceeeeeeeccCCCCCCCCCCEEEEEEE
Q 045478 103 PFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIP-VEKILC-GNEVDDWFPIAGSYGKNLKPFPQLHVSMQ 176 (852)
Q Consensus 103 P~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~-l~~l~~-g~~~~~w~~L~~~~g~~~k~~g~l~l~l~ 176 (852)
|.|||+|.|.+... ...+.|+|+|.|.++ +++||.+.|+ +.++.. +...+.|++|....+. ....|+|.+.+.
T Consensus 68 P~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~-~~~~G~i~vsl~ 146 (296)
T 1dqv_A 68 PIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSE-KADLGELNFSLC 146 (296)
T ss_dssp CEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSC-CSCCCEEEEEEE
T ss_pred CcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeecccccccc-ccccceEEEEEE
Confidence 99999999998643 347899999999988 9999999996 444443 4456789999654432 245789999999
Q ss_pred eee
Q 045478 177 YKP 179 (852)
Q Consensus 177 f~~ 179 (852)
|.|
T Consensus 147 y~~ 149 (296)
T 1dqv_A 147 YLP 149 (296)
T ss_dssp EET
T ss_pred ecc
Confidence 865
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-13 Score=126.93 Aligned_cols=116 Identities=20% Similarity=0.261 Sum_probs=103.0
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeec-CCCCCeee
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVIS-NCENPFWD 106 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~-~s~nP~Wn 106 (852)
-|.|+|.+|.+|+. + +|||+++.+-+.+ .+||++. ++.||+||
T Consensus 22 sL~V~l~~a~~Lpg-----~------------------------------~Dp~akv~FRg~k-~kTkvi~~~~~npvfn 65 (144)
T 3l9b_A 22 ALIVHLKTVSELRG-----R------------------------------ADRIAKVTFRGQS-FYSRVLENCEDVADFD 65 (144)
T ss_dssp EEEEEEEEEESCCS-----C------------------------------EEEEEEEEETTEE-EECCCEEEECSCEEEE
T ss_pred EEEEEEEEecCCCC-----C------------------------------CCCeEEEEEeccc-eeeEEeccCCCCceEc
Confidence 49999999999993 2 8999999998777 8999998 69999999
Q ss_pred eEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeeecC
Q 045478 107 EHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIG 181 (852)
Q Consensus 107 E~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~~ 181 (852)
|.|.|++..+ ...|+|.|+|.+.++ +.+||++.++|.++..++....+-+|++.++++. ++.|.++|+|.|.+
T Consensus 66 E~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~--~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 66 ETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAII--KTSLSMEVRYQAAD 142 (144)
T ss_dssp EEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEE--EEEEEEEEEEEETT
T ss_pred ceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCcc--ccEEEEEEEecCCC
Confidence 9999998763 467899999999988 9999999999999998888888899999988874 48999999999854
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.5e-13 Score=125.08 Aligned_cols=86 Identities=21% Similarity=0.308 Sum_probs=71.7
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeec-CCCCCe
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVIS-NCENPF 104 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~-~s~nP~ 104 (852)
-|.|.|+|++|++|+. .+. +||||+|. . .. .||+++. ++.||.
T Consensus 4 ~~~L~V~V~~A~~l~~---~g~------------------------------~DPYv~v~-~-~~-~kt~~~~~~t~nP~ 47 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA---QEK------------------------------FNTYVTLK-V-QN-VKSTTIAVRGSQPS 47 (131)
T ss_dssp CEEEEEEEEEEECSSC---GGG------------------------------CEEEEEEE-E-TT-EEEECCCEESSSCE
T ss_pred ceEEEEEEEEeECCCC---CCC------------------------------cCeEEEEE-e-cC-EEEeEecCCCCCce
Confidence 3789999999998852 344 89999999 2 22 4666665 699999
Q ss_pred eeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCC
Q 045478 105 WDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCG 148 (852)
Q Consensus 105 WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g 148 (852)
|||+|.|.+......+.|+|+|+| ++ |++||++.||+.++...
T Consensus 48 WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~~ 91 (131)
T 2cjt_A 48 WEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQS 91 (131)
T ss_dssp EEEEEEEEECCCSSEEEEEEEECC-SSCEEEEEEEEEEGGGSCBC
T ss_pred ECCEEEEEEeCCCCeEEEEEEECC-CCCCCeEEEEEEEHHHhhhc
Confidence 999999999887778999999999 66 99999999999998643
|
| >4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A | Back alignment and structure |
|---|
Probab=99.45 E-value=8.5e-14 Score=140.98 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchh
Q 045478 545 KSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAA 624 (852)
Q Consensus 545 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~ 624 (852)
.+....++++|++||++|+|+..+|.. ..++.+|.+|. .+||+|+||+.......
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~y~~~~------------------~~i~~aL~~aa--~rGV~Vrii~D~~~~~~----- 99 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCLFAFSS------------------PQLGRAVQLLH--QRGVRVRVITDCDYMAL----- 99 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEESCBCC------------------HHHHHHHHHHH--HTTCEEEEEESSCCC-------
T ss_pred HHHHHHHHHHHHHhheEEEEEEEEeCC------------------HHHHHHHHHHH--HcCCcEEEEEecccccc-----
Confidence 345678999999999999999844431 24566666663 47899999997421100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEe
Q 045478 625 VQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHA 704 (852)
Q Consensus 625 ~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHS 704 (852)
.. ..++.|.++|++++ ++ .+ ..++|+
T Consensus 100 --------~~-------~~~~~l~~~gi~v~--------~~------------~~-------------------~~~~H~ 125 (196)
T 4ggj_A 100 --------NG-------SQIGLLRKAGIQVR--------HD------------QD-------------------LGYMHH 125 (196)
T ss_dssp ---------C-------CHHHHHHHTTCEEE--------EC------------CS-------------------SSCCCC
T ss_pred --------cH-------HHHHHHHhcCCCcc--------cc------------cc-------------------cccccC
Confidence 00 11467888998752 11 10 136799
Q ss_pred eEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCccc
Q 045478 705 KGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHYT 744 (852)
Q Consensus 705 KlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~ 744 (852)
|+||||++++++||+||+.+|+..| .|..++++|+..+
T Consensus 126 K~~viD~~~~~~GS~N~t~~~~~~n--~E~~~~i~~~~~~ 163 (196)
T 4ggj_A 126 KFAIVDKKVLITGSLNWTTQAIQNN--RENVLIMEDTEYV 163 (196)
T ss_dssp EEEEETTTEEEEESCCBCHHHHHHC--CEEEEEECCHHHH
T ss_pred cEEEEcceEEEecCccCChhhhccc--ceeEEEEECHHHH
Confidence 9999999999999999999999866 9999999887543
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-14 Score=164.66 Aligned_cols=126 Identities=26% Similarity=0.507 Sum_probs=25.2
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCC---
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNC--- 100 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s--- 100 (852)
...|.|+|+|++|++|+++ .||||++.+++...+||+++.++
T Consensus 8 r~~~~L~V~VieAk~L~~~-----------------------------------ddpYv~v~l~~~~~~kT~v~~kt~~g 52 (483)
T 3bxj_A 8 RVDNVLKLWIIEARELPPK-----------------------------------KRYYCELCLDDMLYARTTSKPRSASG 52 (483)
T ss_dssp EEEECC--------------------------------------------------------------------------
T ss_pred eeccEEEEEEEEcCCcCCC-----------------------------------CCCeEEEEECCeEEeeeeEEeCCCCC
Confidence 4678999999999999864 48999999998877899999999
Q ss_pred CCCeeeeEEEEeecCCCceEEEEEEec-C---CCC-CceeeeEeeeceeccCCCceeeeeeeccCCC-------------
Q 045478 101 ENPFWDEHFCVPVAHSVVNLEFHVKDN-D---ILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYG------------- 162 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~~~~l~~~V~d~-d---~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g------------- 162 (852)
.||+|||+|.|.+.+....+.|+|||+ + ..+ +++||++.||+.++..|...+.|++|.++.+
T Consensus 53 lnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~ 132 (483)
T 3bxj_A 53 DTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGG 132 (483)
T ss_dssp ------CCEECC------------------------------------------CCEECC--------------------
T ss_pred CCCccccEEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccc
Confidence 999999999999776677889999994 4 244 8999999999999998888999999976543
Q ss_pred --------CCCCCCCEEEEEEEeeecCCcc
Q 045478 163 --------KNLKPFPQLHVSMQYKPIGQIP 184 (852)
Q Consensus 163 --------~~~k~~g~l~l~l~f~~~~~~~ 184 (852)
+..+..|.|+|+++|.+....|
T Consensus 133 ~~~~~~~~~~~~~~G~lrL~v~~~~~~vlP 162 (483)
T 3bxj_A 133 GSGGGSGGKGKGGCPAVRLKARYQTMSILP 162 (483)
T ss_dssp ------------------CEEEEEECCBCC
T ss_pred cccccccccCCCCCceEEEEEEeeeeeecc
Confidence 1123468999999998865443
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=152.30 Aligned_cols=115 Identities=23% Similarity=0.358 Sum_probs=98.6
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
.|+|.|+|++|++|+++|.++. +||||+|.+++.. .||+++.++.||.|
T Consensus 386 ~~~l~v~v~~a~~L~~~d~~~~------------------------------sdpyv~v~~~~~~-~~T~~~~~t~nP~w 434 (510)
T 3jzy_A 386 IGRLMVHVIEATELKACKPNGK------------------------------SNPYCEISMGSQS-YTTRTIQDTLNPKW 434 (510)
T ss_dssp CEEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEETTEE-EECCCCSSCSSCEE
T ss_pred CceEEEEeceeecCCCCCCCCC------------------------------CCeEEEEEECCee-ccCCccCCCCCCcc
Confidence 5789999999999999998776 9999999998765 89999999999999
Q ss_pred eeEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCc----eeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 106 DEHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNE----VDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 106 nE~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~----~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
||+|.|.+.... ..+.|+|||.|.++ +++||.+.+++.++..+.. ...|+++.+ +..|+|++++++
T Consensus 435 ~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~------~~~G~i~l~~~l 506 (510)
T 3jzy_A 435 NFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHE------VPTGEVWVRFDL 506 (510)
T ss_dssp EEEEEEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBS------SSSCEEEEEEEE
T ss_pred CceEEEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCC------CCCceEEEEEEE
Confidence 999999987654 56899999999988 9999999999999986544 778999842 235777766654
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=154.06 Aligned_cols=120 Identities=27% Similarity=0.381 Sum_probs=102.2
Q ss_pred eeeEEEEEEEEecCCCCCCC--cchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeec
Q 045478 25 LHGDLDLSILEAKSLPNMDL--ITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVIS 98 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~ 98 (852)
..++|.|+|++|++|+.++. .+. +||||+|.+.+ ....||+++.
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~------------------------------~DPYV~V~l~g~~~d~~~~kTkvi~ 544 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSI------------------------------VDPKVIVEIHGVGRDTGSRQTAVIT 544 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSC------------------------------CCEEEEEEEESSGGGCEEEECCCCT
T ss_pred cceEEEEEEEEcCCCCcccccccCC------------------------------CCcEEEEEEecCCCCcceeeccccc
Confidence 46889999999999998874 333 89999999954 2458999999
Q ss_pred CC-CCCeeeeEEEEeecCCC-ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEE
Q 045478 99 NC-ENPFWDEHFCVPVAHSV-VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSM 175 (852)
Q Consensus 99 ~s-~nP~WnE~f~~~~~~~~-~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l 175 (852)
++ .||+|||+|.|.+..+. ..|.|+|+|+|.++ +++||++.||+..|..|. +|++|.+..|++. ..+.|.|.+
T Consensus 545 ~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~-~~~~L~v~i 620 (624)
T 1djx_A 545 NNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQH-PSATLFVKI 620 (624)
T ss_dssp TCSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEE-EEEEEEEEE
T ss_pred CCCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCC-CceEEEEEE
Confidence 97 99999999999998754 67899999999987 999999999999998774 6999998888763 467888888
Q ss_pred Eee
Q 045478 176 QYK 178 (852)
Q Consensus 176 ~f~ 178 (852)
+|.
T Consensus 621 ~~~ 623 (624)
T 1djx_A 621 SIQ 623 (624)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-12 Score=148.66 Aligned_cols=108 Identities=22% Similarity=0.253 Sum_probs=92.5
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCee
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFW 105 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~W 105 (852)
-|.|.|+|++|++|+. |.+++ +||||+|.+++.. .||+++.++.||+|
T Consensus 393 ~~~L~V~V~~A~~L~~-D~~g~------------------------------sDPYV~v~l~~~~-~kTkvik~tlNP~W 440 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWG-DYTTA------------------------------TDAYLKVFFGGQE-FRTGVVWNNNNPRW 440 (540)
T ss_dssp EEEEEEEEEEEESCCC-SSCSC------------------------------CCEEEEEEETTEE-EECCCBCSCSSCBC
T ss_pred ccEEEEEEEEccCCCc-ccCCC------------------------------cCeEEEEEECCEe-eeeeeecCCCCCCC
Confidence 4789999999999998 88877 9999999999876 99999999999999
Q ss_pred eeEEEEeecC--CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 106 DEHFCVPVAH--SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 106 nE~f~~~~~~--~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
||+|.|.+.. ....|.|+|||.|..+ +++||++.+++. .|. .+.|++| ..|.|+++++.+
T Consensus 441 ne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~---~g~-~~~~~~l---------~~G~l~~~~~~~ 503 (540)
T 3nsj_A 441 TDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH---SGF-HEVTCEL---------NHGRVKFSYHAK 503 (540)
T ss_dssp CCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCC---SEE-EEEEEEC---------SSSEEEEEEEEE
T ss_pred CeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEee---CCc-EEEEEEc---------CCeEEEEEEEEE
Confidence 9999998643 5677899999999987 799999999987 343 6788886 136888877644
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-12 Score=125.86 Aligned_cols=85 Identities=21% Similarity=0.305 Sum_probs=71.8
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeec-CCCCCe
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVIS-NCENPF 104 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~-~s~nP~ 104 (852)
.|.|.|+|++|++|+ ..+. +||||+|. . .. .||+++. ++.||+
T Consensus 13 ~~~L~V~V~~A~~l~---~~g~------------------------------~DPYV~v~-~-~~-~kt~~~~~~t~nP~ 56 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDG---AQEK------------------------------FNTYVTLK-V-QN-VESTTIAVRGSQPS 56 (167)
T ss_dssp CCEEEEEEEEEECSS---CGGG------------------------------CEEEEEEE-E-TT-EEEECCCEESSSCE
T ss_pred eEEEEEEEEEEECCC---CCCC------------------------------CCeEEEEE-e-cc-eEEEEecCCCCCCC
Confidence 478999999999885 2344 89999999 2 22 4777775 599999
Q ss_pred eeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccC
Q 045478 105 WDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILC 147 (852)
Q Consensus 105 WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~ 147 (852)
|||+|.|.+......+.|+|+|+| ++ |++||++.||+.++..
T Consensus 57 WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l~~ 99 (167)
T 2cjs_A 57 WEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQ 99 (167)
T ss_dssp EEEEEEEECCCTTSEEEEEEEECC-SSCCEEEEEEEEEGGGSCB
T ss_pred CCCEEEEEeeCCCCEEEEEEEECC-CCCCceEEEEEEEHHHhcc
Confidence 999999999887778999999999 65 9999999999999864
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=133.02 Aligned_cols=90 Identities=34% Similarity=0.520 Sum_probs=78.6
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--Ce--eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GA--TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~--~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|++++.++. +||||+|.+. +. ...||+++.++.
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~------------------------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~ 198 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGL------------------------------SDPYVKIHLMQNGKRLKKKKTTIKKNTL 198 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEEEETTEEEEEEECCCCCSCS
T ss_pred CCceEEEEEEeECCCCcCCCCC------------------------------cCeEEEEEEEeCCcEeeeeccceecCCC
Confidence 4789999999999999987776 8999999984 32 458999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceec
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKI 145 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l 145 (852)
||.|||+|.|.+... ...+.|+|+|.+.++ +++||.+.|++..+
T Consensus 199 nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~ 246 (284)
T 2r83_A 199 NPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 246 (284)
T ss_dssp SCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred CCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCC
Confidence 999999999998754 346899999999988 99999999999763
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.29 E-value=5.1e-12 Score=150.36 Aligned_cols=104 Identities=22% Similarity=0.375 Sum_probs=92.8
Q ss_pred eeeEEEEEEEEecCCCC---CCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--eeEEEeeeecC
Q 045478 25 LHGDLDLSILEAKSLPN---MDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--ATVAQTRVISN 99 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~~~~rT~vi~~ 99 (852)
..|.|.|+|++|++|++ +|..+. +||||+|.+.+ ....||+++.+
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~------------------------------sDPYV~V~l~~~~~~k~kTkvik~ 65 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDT------------------------------PDPYVELFISTTPDSRKRTRHFNN 65 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCC------------------------------CCEEEEEECTTSTTCCEECCCCTT
T ss_pred CccEEEEEEEEEECCCCccccCCCCC------------------------------cCeEEEEEEecCCCCeEecceEcC
Confidence 46899999999999998 776655 89999999985 34589999999
Q ss_pred CCCCeeeeEEEEeecC-CCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeec
Q 045478 100 CENPFWDEHFCVPVAH-SVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 100 s~nP~WnE~f~~~~~~-~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
+.||+|||+|.|.+.. ....++|+|+|+|.+++++||++.|++.++..|...+.|++|.
T Consensus 66 tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 66 DINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp CSSCEEEEEEEEEECTTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred CCCCeeeeEEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEecC
Confidence 9999999999999987 4567899999999988999999999999999898889999993
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.8e-12 Score=137.45 Aligned_cols=108 Identities=31% Similarity=0.447 Sum_probs=88.7
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--C--eeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--G--ATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~--~~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|+++|..+. +||||++++. + ....||+++.++.
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~------------------------------~Dpyv~v~l~~~~~~~~~~kT~v~~~t~ 200 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGF------------------------------SDPYVKASLISEGRRLKKRKTSIKKNTL 200 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSC------------------------------CCEEEEECCCTTCCTTSCEECCCCCSCS
T ss_pred cceeEEEEEEeecCCccCCCCC------------------------------CCcEEEEEEEeCCcCccceecceecCCC
Confidence 4889999999999999998776 8999999996 2 2458999999999
Q ss_pred CCeeeeEEEEeecCCC---ceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAHSV---VNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~~~---~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+.... ..+.|+|+|.+.++ +++||.+.|++..+.. ...++|+.|+...+++
T Consensus 201 nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~-~~~~~W~~~~~~~~~~ 266 (296)
T 1dqv_A 201 NPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLANPRKP 266 (296)
T ss_dssp SCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSSSSSSC
T ss_pred CCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc-hhHHHHHHHHhCCCCc
Confidence 9999999999987642 46899999999998 8999999999987632 1345677766555544
|
| >4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-10 Score=118.92 Aligned_cols=138 Identities=15% Similarity=0.004 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchh
Q 045478 545 KSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAA 624 (852)
Q Consensus 545 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~ 624 (852)
....+.++++|.+||++|+|+. |+++ + ..++.+|.+|. .+||+|+||+....... ..
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~-Y~~~------~-----------~~I~~aL~~Aa--~RGV~VRii~D~~~~~~--~~- 113 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAI-YTFT------S-----------LFLADSIKRAL--QRGVIIRIISDGEMVYS--KG- 113 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEC-SCBC------C-----------HHHHHHHHHHH--HHTCEEEEECCTTTTTS--TT-
T ss_pred HHHHHHHHHHHHHhhhEEEEEE-EEeC------C-----------HHHHHHHHHHH--HcCCeEEEEEechhhhh--hH-
Confidence 3456678999999999999997 5442 1 24666677764 47799999997432111 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEe
Q 045478 625 VQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHA 704 (852)
Q Consensus 625 ~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHS 704 (852)
. .+..|...|+.+.+... ....|.. +.- -.+..... +.....|.
T Consensus 114 ---------~--------~~~~~~~~~~~~~~~~~------~~~~h~K----~~v----iD~~~~~~-----~~~~~~H~ 157 (220)
T 4gel_A 114 ---------S--------QISMLAQLGVPVRVPIT------TNLMHNK----FCI----IDGFERVE-----EIRLLRKL 157 (220)
T ss_dssp ---------C--------HHHHHHHTTCCEEECCS------SSCBCCC----EEE----ESCHHHHH-----HHHHHTTC
T ss_pred ---------H--------HHHHHHhcCCcEEeecc------cccccce----eEE----Ecchhccc-----ccccccce
Confidence 0 13445566664310000 0000000 000 00000000 00124688
Q ss_pred eEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCcc
Q 045478 705 KGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHY 743 (852)
Q Consensus 705 KlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~ 743 (852)
|++|+|+.++++||+||+.+|+.+| .|..+++.++..
T Consensus 158 K~~v~D~~~v~~GS~N~t~~s~~~N--~E~~~vi~~~~~ 194 (220)
T 4gel_A 158 KFMRPCYSIVISGSVNWTALGLGGN--WENCIITADDKL 194 (220)
T ss_dssp SCCCCCCCEEEEESCCBSHHHHHTS--BEEEEEECCHHH
T ss_pred eccccccceEEecCccccccccccC--ceEEEEEECHHH
Confidence 8888888999999999999999877 999999987754
|
| >1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6e-10 Score=131.64 Aligned_cols=118 Identities=17% Similarity=0.225 Sum_probs=83.8
Q ss_pred HHHHHHHHhccc-----eEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCch
Q 045478 549 SAYVKAIRSAQH-----FIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSA 623 (852)
Q Consensus 549 ~ayl~aI~~Ak~-----~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~ 623 (852)
++++++|++|++ .|+| ++||++. + ..++.++++|. .+|++|+|+++..+.- +.
T Consensus 350 ~~v~~~I~~A~~dp~v~~I~i-t~Y~~~~-----d-----------~~I~~AL~~AA--~rGV~VrVLvd~~a~~--~~- 407 (687)
T 1xdp_A 350 EHVLELLRQASFDPSVLAIKI-NIYRVAK-----D-----------SRIIDSMIHAA--HNGKKVTVVVELQARF--DE- 407 (687)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-EESSCCT-----T-----------CHHHHHHHHHH--HTTCEEEEEECTTCSS--TT-
T ss_pred hhHHHHHHHHhhCCcceEEEE-EeeeecC-----c-----------HHHHHHHHHHH--hcCCEEEEEECCCccc--ch-
Confidence 368899999997 9999 8999842 1 13455555553 3789999999975411 10
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEE
Q 045478 624 AVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVH 703 (852)
Q Consensus 624 ~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 703 (852)
+... ...+.|.++|+++.| +.+ ...+|
T Consensus 408 -------~~n~-------~~~~~L~~aGV~V~~--------------------~~~-------------------~~k~H 434 (687)
T 1xdp_A 408 -------EANI-------HWAKRLTEAGVHVIF--------------------SAP-------------------GLKIH 434 (687)
T ss_dssp -------TTTT-------TTTHHHHHHTCEEEE--------------------CCT-------------------TCEEC
T ss_pred -------hhHH-------HHHHHHHHCCCEEEE--------------------ecC-------------------Ccccc
Confidence 0111 125788899987621 111 13599
Q ss_pred eeEEEEcc----ee---EEecCcCcccCCCCCCCCceeEEEEecCcc
Q 045478 704 AKGMIVDD----EY---VIMGSANINQRSLEGSRDTEIAMGAYQPHY 743 (852)
Q Consensus 704 SKlmIVDD----~~---~iIGSANln~RSm~~n~DsEi~v~i~d~~~ 743 (852)
+|+||||+ ++ ++|||+|+|.||+..+ +|+++.+.++..
T Consensus 435 ~Ki~VID~re~~~i~~~a~iGS~N~d~rs~~~n--~D~~l~i~~~~i 479 (687)
T 1xdp_A 435 AKLFLISRKENGEVVRYAHIGTGNFNEKTARLY--TDYSLLTADARI 479 (687)
T ss_dssp CEEEEEEEEETTEEEEEEEEESSCSCTTGGGTE--EEEEEEECCHHH
T ss_pred ceEEEEEeccCCeEEEEEEEeCCcCCcchhhhc--ceEEEEEeCHHH
Confidence 99999994 44 9999999999999855 999999988754
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.2e-09 Score=96.29 Aligned_cols=90 Identities=19% Similarity=0.341 Sum_probs=78.2
Q ss_pred CCcEEEEEECCeeE---EEe-eeecCCCCCeeeeEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceecc-----CC
Q 045478 78 SNPYVSVCLSGATV---AQT-RVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKIL-----CG 148 (852)
Q Consensus 78 sdpYv~v~l~~~~~---~rT-~vi~~s~nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~-----~g 148 (852)
.||||.|.++.... ++| ....+|..|.|||+|.-.+. ....+.|.|+++.. +++..+.|++++|. .+
T Consensus 32 lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~ 107 (138)
T 2enj_A 32 VNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN-KGRVMQIIVKGKNV---DLISETTVELYSLAERCRKNN 107 (138)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC-SSCEEEEEEECSSC---SCCEEEEEESHHHHHHHHHTT
T ss_pred CCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE-CCeEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 79999999998766 888 77777999999999999874 67889999997655 89999999999999 45
Q ss_pred CceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 149 NEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 149 ~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
...+.|++| ++.|+|++.++|+-
T Consensus 108 g~~e~WvdL--------eP~Gkl~v~i~~~~ 130 (138)
T 2enj_A 108 GKTEIWLEL--------KPQGRMLMNARYFL 130 (138)
T ss_dssp TCEEEEEEC--------BSSCEEEEEEEECC
T ss_pred CceEEEEec--------ccCcEEEEEEEEEE
Confidence 677999999 57889999999974
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=131.66 Aligned_cols=106 Identities=25% Similarity=0.404 Sum_probs=91.3
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC----CeeEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS----GATVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~----~~~~~rT~vi~~s 100 (852)
-.+.|.|+|.+|++|+++|.++. +||||++.+. .....||+++.++
T Consensus 170 ~~~~L~V~v~~a~~L~~~d~~g~------------------------------sDPyvkv~l~p~~~~~~k~kT~v~~~t 219 (674)
T 3pfq_A 170 DREVLIVVVRDAKNLVPMDPNGL------------------------------SDPYVKLKLIPDPKSESKQKTKTIKSS 219 (674)
T ss_dssp CSSEEEEEEEEEESCCCCSTTSS------------------------------CCEEEEEEEESCSSCCSCEECCCCSSC
T ss_pred ccceeeeeeecccccCCCCcccc------------------------------cCcccccccccCccccccccccccccc
Confidence 36889999999999999998776 9999999983 2245799999999
Q ss_pred CCCeeeeEEEEeecCC--CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCC
Q 045478 101 ENPFWDEHFCVPVAHS--VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSY 161 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~--~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~ 161 (852)
.||.|||+|.|.+... ...+.|+|||.|..+ +++||.+.+++.++..+. .++|+.|+++.
T Consensus 220 lnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~ 282 (674)
T 3pfq_A 220 LNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQE 282 (674)
T ss_dssp SSCEEEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCTT
T ss_pred cCCCccceeeeecccCCccceeeeEEeecccccccccccccccchhhhccCC-cccceeecccc
Confidence 9999999999998643 356899999999998 999999999999998654 68999997653
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.96 E-value=7.2e-09 Score=94.18 Aligned_cols=89 Identities=17% Similarity=0.288 Sum_probs=77.0
Q ss_pred CCcEEEEEECCeeEE---Ee-eeecCCCCCeeeeEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceecc-----CC
Q 045478 78 SNPYVSVCLSGATVA---QT-RVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKIL-----CG 148 (852)
Q Consensus 78 sdpYv~v~l~~~~~~---rT-~vi~~s~nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~-----~g 148 (852)
.||||.|.++....+ +| ....+|..|.|||+|.-.+. ....+.+.|+++.. +++..+.|++++|. .+
T Consensus 27 lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~ 102 (126)
T 1yrk_A 27 NQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY-EGRVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNN 102 (126)
T ss_dssp CCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECC-TTCEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTT
T ss_pred CCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeee-CCEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCC
Confidence 799999999987655 87 67777999999999999874 67889999997665 89999999999999 45
Q ss_pred CceeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 149 NEVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 149 ~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
...+.|++| ++.|+|++.++|+
T Consensus 103 g~~e~WvdL--------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 103 GKAEFWLDL--------QPQAKVLMSVQYF 124 (126)
T ss_dssp TEEEEEEEC--------BSSCEEEEEEEEE
T ss_pred CceEEEEec--------ccCcEEEEEEEEe
Confidence 677899999 5788999999986
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-09 Score=127.53 Aligned_cols=115 Identities=22% Similarity=0.430 Sum_probs=92.6
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe------eEEEeeeec
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA------TVAQTRVIS 98 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~------~~~rT~vi~ 98 (852)
..++|.|+|++|++|+.. . +||||+|.+.+. ...||+++.
T Consensus 648 ~~~~L~V~Visaq~L~~~----~------------------------------~DPYV~V~l~g~p~d~~~~k~kTkvv~ 693 (816)
T 3qr0_A 648 VAGTIEIKIISAQFLSDK----Q------------------------------ISSYVEVEMYGLPTDTVRKKFKTKIIE 693 (816)
T ss_dssp CCEEEEEEEEEEECCCSS----C------------------------------CCEEEEEEEESSGGGCEEEEEECCCBC
T ss_pred cceEEEEEEEEcccCCCC----C------------------------------CCCeEEEEEeCCCcccccceeeeEEec
Confidence 358999999999999852 2 899999999641 347999998
Q ss_pred C-CCCCeeeeE-EEEe-ecCC-CceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEE
Q 045478 99 N-CENPFWDEH-FCVP-VAHS-VVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVS 174 (852)
Q Consensus 99 ~-s~nP~WnE~-f~~~-~~~~-~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~ 174 (852)
+ +.||+|||+ |.|. +..+ ...|.|+|+|++ +++||++.|||..|..|. ++++|.+..|.+. ..+.|.+.
T Consensus 694 ~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~~-~~atLfv~ 766 (816)
T 3qr0_A 694 NNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIKPGY---RHVPLRNESNRPL-GLASVFAH 766 (816)
T ss_dssp SCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT---SCEEEEEEEESTTCCCEE---EEEEEECTTSCEE-EEEEEEEE
T ss_pred CCCCCCeEcCceeEEccccCCCccEEEEEEEecC---CCeeeEEEEEHHHcCCcc---eEEEEeCCCCCCC-CceEEEEE
Confidence 6 699999998 9998 6544 357899999975 789999999999999874 5799999888763 34677777
Q ss_pred EEeeec
Q 045478 175 MQYKPI 180 (852)
Q Consensus 175 l~f~~~ 180 (852)
+.+...
T Consensus 767 i~~~~~ 772 (816)
T 3qr0_A 767 IVAKDY 772 (816)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 776653
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-09 Score=128.65 Aligned_cols=113 Identities=21% Similarity=0.392 Sum_probs=91.2
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC-----eeEEEee-eec
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG-----ATVAQTR-VIS 98 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~-----~~~~rT~-vi~ 98 (852)
..|+|.|+|++|++|++. . +||||+|.+-+ ....||+ ++.
T Consensus 676 ~~~~L~V~Visa~~L~~~----~------------------------------~DPYV~V~l~g~p~d~~~k~kTk~vv~ 721 (799)
T 2zkm_X 676 VATTLSITVISGQFLSER----S------------------------------VRTYVEVELFGLPGDPKRRYRTKLSPS 721 (799)
T ss_dssp TCEEEEEEEEEEESCCSS----C------------------------------CCEEEEEEEECCTTSCCCCEECCCCSS
T ss_pred eeeeEEEEEEeccccCcc----C------------------------------CCcEEEEEEEecCCCcccceeeccccc
Confidence 468999999999999852 2 89999999943 1347999 886
Q ss_pred C-CCCCeeee-EEEE-eecCC-CceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEE
Q 045478 99 N-CENPFWDE-HFCV-PVAHS-VVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVS 174 (852)
Q Consensus 99 ~-s~nP~WnE-~f~~-~~~~~-~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~ 174 (852)
+ +.||+||| +|.| .+..+ ...|.|+|+|++ +++||.+.||+..|..|. +|++|.+..|.+. ..+.|.+.
T Consensus 722 ~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d---~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~~-~~~~Lfv~ 794 (799)
T 2zkm_X 722 TNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY---HHLCLHSESNMPL-TMPALFIF 794 (799)
T ss_dssp SCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEE-EEEEEEEE
T ss_pred CCCCCCeeecceEEEEEEccCCccEEEEEEEEeC---CCccceEeeehhhcCCCc---EEEeccCCCCCCC-CceEEEEE
Confidence 4 69999999 6999 77544 357899999986 789999999999998764 6899988888764 35778887
Q ss_pred EEee
Q 045478 175 MQYK 178 (852)
Q Consensus 175 l~f~ 178 (852)
+++.
T Consensus 795 i~~~ 798 (799)
T 2zkm_X 795 LEMK 798 (799)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-09 Score=129.50 Aligned_cols=114 Identities=22% Similarity=0.373 Sum_probs=92.3
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC-----eeEEEeeeecC-
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG-----ATVAQTRVISN- 99 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~-----~~~~rT~vi~~- 99 (852)
..+|.|+|++|++|+.. . +||||+|.+.+ ....||+++.+
T Consensus 724 ~~~L~V~Visaq~L~~~----~------------------------------~DPYV~V~l~g~p~D~~~k~kTkvi~~N 769 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR----K------------------------------VGIYVEVDMFGLPVDTRRKYRTRTSQGN 769 (885)
T ss_dssp CEEEEEEEEEEESCCSS----C------------------------------CCEEEEEEEESSTTTCBCCCCCCCCSSC
T ss_pred ceEEEEEEEEeccCccc----C------------------------------CCcEEEEEEeCCCcccccceeeEEeeCC
Confidence 45899999999999842 2 89999999964 13479999976
Q ss_pred CCCCeeee-EEEEe-ecCC-CceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEE
Q 045478 100 CENPFWDE-HFCVP-VAHS-VVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQ 176 (852)
Q Consensus 100 s~nP~WnE-~f~~~-~~~~-~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~ 176 (852)
+.||+||| +|.|. +..+ ...|.|+|+|+| +++||++.|||..|..|. ++++|.+..|.+. ..+.|.+.+.
T Consensus 770 glNPvWnEe~F~F~~V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~l-~~atLfv~i~ 842 (885)
T 3ohm_B 770 SFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRSGY---HYVCLRNEANQPL-CLPALLIYTE 842 (885)
T ss_dssp SSSCBCCCCCEEEEEESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCCEE---EEEEEECTTSCEE-EEEEEEEEEE
T ss_pred CcCCeeccceeEEeeEEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCCCc---eEEEecCCCCCcc-CceEEEEEEE
Confidence 69999999 69998 6443 457899999987 889999999999998774 5799988888652 4578888888
Q ss_pred eeec
Q 045478 177 YKPI 180 (852)
Q Consensus 177 f~~~ 180 (852)
+.+.
T Consensus 843 ~~~~ 846 (885)
T 3ohm_B 843 ASDY 846 (885)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7764
|
| >3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=115.97 Aligned_cols=148 Identities=14% Similarity=0.036 Sum_probs=98.4
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTE 318 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~ 318 (852)
......++++|.+|+++|+|++..|.| +..+.++|+.+++|||+|+||+ +...+...+.-...
T Consensus 257 ~~i~~~~~~lI~~A~~~I~I~tpYf~p----------------~~~~~~aL~~Aa~rGV~VrIi~-~~~~and~y~~~~~ 319 (458)
T 3hsi_A 257 NELNQVIEDLFLQVQKKLVICTPYFNF----------------PRTLQHKIATLLENGKRVEIIV-GDKVANDFYIPPEQ 319 (458)
T ss_dssp CHHHHHHHHHHHTCSSEEEEECSSSCC----------------CHHHHHHHHHHHTTTCEEEEEE-ECGGGSTTCCCTTS
T ss_pred hHHHHHHHHHHHhcccEEEEEEeccCC----------------CHHHHHHHHHHHHCCCeEEEEE-CCccccCCccCCcc
Confidence 457889999999999999999644433 1589999999999999999998 76532211100000
Q ss_pred ccccCCc-HHH-----------HhhhcCCC-CEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEE
Q 045478 319 GVMQTHD-EET-----------RKFFKHSS-VNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAF 385 (852)
Q Consensus 319 ~~~~~~~-~~~-----------~~~l~~~g-v~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAf 385 (852)
.+..... ... ...+..+| +.|..+.. ..+..|.|++|||++ +++
T Consensus 320 ~~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~V~i~~~---------------~~~~lHaK~~vvD~~--------~~~ 376 (458)
T 3hsi_A 320 PFKMAGALPYLYESNLRRFCEKFETQIESGQLVVRLWRD---------------GDNTYHLKGVWVDDR--------YIL 376 (458)
T ss_dssp CCCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEEEEEECB---------------TTBEECCCEEEETTT--------EEE
T ss_pred hhhhhcchHHHHHHhhhhhHHHHHHHHhCCCeEEEEEec---------------CCCceeEEEEEECCe--------EEE
Confidence 0000000 011 11233455 44443321 124779999999998 999
Q ss_pred EcccCCCCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh---HHHHHHHHHHHHHhhhh
Q 045478 386 IGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP---AAYDILINFEQRWRRST 458 (852)
Q Consensus 386 vGG~nl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp---aa~dl~~~F~~rW~~~~ 458 (852)
||+.|++..-+. --.++.+.|.+| .+.++.+.|.+.|..+.
T Consensus 377 vGS~N~d~RS~~--------------------------------lN~E~~~~i~~~~~~l~~~l~~~f~~~~~~s~ 420 (458)
T 3hsi_A 377 LTGNNLNPRAWR--------------------------------LDAENGLLIYDPQQQLLAQVEKEQNQIRQHTK 420 (458)
T ss_dssp EECCCCSHHHHH--------------------------------TCEEEEEEEECTTCSSHHHHHHHHHHHHTTEE
T ss_pred ecCCCCCcchhh--------------------------------hCceeEEEEeCCcHHHHHHHHHHHHHHHHhCe
Confidence 999999872221 112688899988 79999999999998643
|
| >1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-07 Score=110.39 Aligned_cols=159 Identities=20% Similarity=0.231 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccc
Q 045478 240 QCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEG 319 (852)
Q Consensus 240 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~ 319 (852)
.....++++|.+||++|+|+.-.|.| |++... -....|.++|+.+++|||+|+||+ +........ ...+
T Consensus 314 ~~~~~~~~~I~~A~~~I~I~tq~~~p--yf~p~~------~~~~~i~~aL~~Aa~rGV~VrIl~-~~~~~~~~~--~~a~ 382 (506)
T 1v0w_A 314 PEESALRALVASAKGHIEISQQDLNA--TCPPLP------RYDIRLYDALAAKMAAGVKVRIVV-SDPANRGAV--GSGG 382 (506)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCSSC--CTTTSC------SCCHHHHHHHHHHHHTTCEEEEEE-CCGGGCC--------
T ss_pred cHHHHHHHHHhCcCcEEEEEeccccc--cccCcc------cchHHHHHHHHHHHhCCCcEEEEe-CCCCchHHH--HHhH
Confidence 46789999999999999999632222 111000 012599999999999999999998 654211100 0000
Q ss_pred cccCCc-HHH------HhhhcCC-----------CCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCc
Q 045478 320 VMQTHD-EET------RKFFKHS-----------SVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRK 381 (852)
Q Consensus 320 ~~~~~~-~~~------~~~l~~~-----------gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~ 381 (852)
...... .+. ...+... ++++..+...+. ..+ ..+.....|.|++|||++
T Consensus 383 ~~~~~~L~~~~~~l~~gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~--~~~----~~~~~~~lHaK~~vvD~~------- 449 (506)
T 1v0w_A 383 YSQIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPN--GKW----ADGHPYAQHHKLVSVDSS------- 449 (506)
T ss_dssp CCCCSCTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSSSS--SSC----TTSCCCCBCCEEEEETTT-------
T ss_pred HHHHHHHHHhhhhhcccchhcccccchhccccccceeeeeccccCc--ccc----ccCccccceEEEEEECCc-------
Confidence 000000 000 0000011 123321110000 000 000123689999999998
Q ss_pred eEEEEcccCCCCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh-HHHHHHHHHHHH-Hhhhh
Q 045478 382 ISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP-AAYDILINFEQR-WRRST 458 (852)
Q Consensus 382 ~vAfvGG~nl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp-aa~dl~~~F~~r-W~~~~ 458 (852)
++++|+.|+.. |. ++++.+.|++| .+.++.+.|.+. |+...
T Consensus 450 -~~~vGS~N~d~-rS----------------------------------~~E~~l~i~~~~~a~~l~~~f~~~~w~~s~ 492 (506)
T 1v0w_A 450 -TFYIGSKNLYP-SW----------------------------------LQDFGYIVESPEAAKQLDAKLLDPQWKYSQ 492 (506)
T ss_dssp -EEEEESCCSSC-CC----------------------------------SBCEEEEEECHHHHHHHHHHTHHHHHHHHG
T ss_pred -EEEEeCCCCCC-cc----------------------------------hhhceeEecCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999965 42 13789999998 688899999975 87543
|
| >2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 | Back alignment and structure |
|---|
Probab=98.05 E-value=8.3e-06 Score=95.86 Aligned_cols=119 Identities=13% Similarity=0.170 Sum_probs=83.0
Q ss_pred HHHHHHHHHhccc-----eEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCc
Q 045478 548 HSAYVKAIRSAQH-----FIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNS 622 (852)
Q Consensus 548 ~~ayl~aI~~Ak~-----~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~ 622 (852)
.++++++|++|++ .|.|+ .|.++.. ..++.++++|. .+|++|+|++....-.+..
T Consensus 354 f~~vi~~I~~A~~DP~V~sIk~t-lYr~~~d----------------s~Iv~ALi~AA--~rGv~V~vLvel~arfdee- 413 (705)
T 2o8r_A 354 YDYVVRLLMEAAISPDVSEIRLT-QYRVAEN----------------SSIISALEAAA--QSGKKVSVFVELKARFDEE- 413 (705)
T ss_dssp SHHHHHHHHHHHTCTTEEEEEEE-ESCCCSC----------------CHHHHHHHHHH--HTTCEEEEEECCCSCC----
T ss_pred HHHHHHHHHHhccCCCceEEEEE-EEEEcCC----------------HHHHHHHHHHH--HCCCEEEEEEeCCCCcchh-
Confidence 3489999999999 99974 5655321 14566666664 3779999999853211100
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEE
Q 045478 623 AAVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYV 702 (852)
Q Consensus 623 ~~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 702 (852)
. .. ...+.|.++|+++.| .+ . ...+
T Consensus 414 ~---------ni-------~wa~~Le~aGv~Vv~---------g~----------~--------------------~lk~ 438 (705)
T 2o8r_A 414 N---------NL-------RLSERMRRSGIRIVY---------SM----------P--------------------GLKV 438 (705)
T ss_dssp ----------CH-------HHHHHHHHHTCEEEE---------CC----------T--------------------TCCB
T ss_pred h---------hH-------HHHHHHHHCCCEEEE---------cc----------C--------------------CCCc
Confidence 0 00 126789999998632 11 0 1368
Q ss_pred EeeEEEEcce---------eEEecCcCcccCCCCCCCCceeEEEEecCcc
Q 045478 703 HAKGMIVDDE---------YVIMGSANINQRSLEGSRDTEIAMGAYQPHY 743 (852)
Q Consensus 703 HSKlmIVDD~---------~~iIGSANln~RSm~~n~DsEi~v~i~d~~~ 743 (852)
|+|++|||++ |+.+|+.|+|+.+.... +++++.+.++..
T Consensus 439 H~Ki~lIdrr~~~~g~~~~y~~igtGN~n~~tariy--~D~~l~t~~~~i 486 (705)
T 2o8r_A 439 HAKTALILYHTPAGERPQGIALLSTGNFNETTARIY--SDTTLMTANTDI 486 (705)
T ss_dssp CCCEEEEEECCCSSSCCCEEEEEESSCSSCCCSSCE--EEEEEEECCHHH
T ss_pred eeEEEEEecccccCCceeEEEeccccceeeeEEEEE--eeeeeeecChHH
Confidence 9999999988 68899999999999865 899999887754
|
| >3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0091 Score=65.05 Aligned_cols=48 Identities=21% Similarity=0.152 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEE
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLI 303 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLv 303 (852)
+.....+.+.|.+|+++|++..|.- .-..+.+.|.++++|||+|++++
T Consensus 118 ~~I~~ri~eli~~A~~eI~i~~~~~-----------------~l~~l~~~L~~a~~RGV~Vrvi~ 165 (342)
T 3qph_A 118 DEAIEMFRESLYSAKNEVIVVTPSE-----------------FFETIREDLIKTLERGVTVSLYI 165 (342)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECHH-----------------HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHhhheEEEEEeCHH-----------------HHHHHHHHHHHHHhCCCEEEEEE
Confidence 5778999999999999999987631 01477889999999999999997
|
| >3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.017 Score=62.97 Aligned_cols=52 Identities=8% Similarity=0.058 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCC
Q 045478 544 DKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMW 615 (852)
Q Consensus 544 e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~ 615 (852)
...|.+....+|++|++.|||..++.. -..+...+.++. .+||+|++++|..
T Consensus 117 ~~~I~~ri~eli~~A~~eI~i~~~~~~------------------l~~l~~~L~~a~--~RGV~Vrvi~~~~ 168 (342)
T 3qph_A 117 FDEAIEMFRESLYSAKNEVIVVTPSEF------------------FETIREDLIKTL--ERGVTVSLYIDKI 168 (342)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEECHHH------------------HHHHHHHHHHHH--HTTCEEEEEESSC
T ss_pred HHHHHHHHHHHHHhhheEEEEEeCHHH------------------HHHHHHHHHHHH--hCCCEEEEEECCC
Confidence 367888999999999999999865432 112333444443 4789999999843
|
| >2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.035 Score=56.81 Aligned_cols=50 Identities=20% Similarity=0.102 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeC
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWD 305 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD 305 (852)
+...+.+.+.|++|+++|++..|. ..-.+|.+.|++|++|||.|+|+++.
T Consensus 9 e~Ii~r~~e~I~~A~~el~lsi~~-----------------e~l~~l~~~L~~A~~rGV~V~liv~~ 58 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKNEVIVVTPS-----------------EFFETIREDLIKTLERGVTVSLYIDK 58 (233)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEECG-----------------GGHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHHHHHhhhEEEEEeCH-----------------HHHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 677899999999999999998763 12368999999999999999999954
|
| >2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus} | Back alignment and structure |
|---|
Probab=81.91 E-value=5.3 Score=40.24 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=33.3
Q ss_pred EEEeeEEEE---cceeEEecCcCcccCCCCCCCCceeEEEEecC
Q 045478 701 YVHAKGMIV---DDEYVIMGSANINQRSLEGSRDTEIAMGAYQP 741 (852)
Q Consensus 701 yvHSKlmIV---DD~~~iIGSANln~RSm~~n~DsEi~v~i~d~ 741 (852)
.+|+|+... |...++|||.|+..--|..| -|+++.+.+.
T Consensus 103 i~HaK~Yg~~~n~g~~LIV~SgNfT~pGmsQN--vE~sllld~~ 144 (358)
T 2c1l_A 103 ILHAKLYGTSNNLGESLVVSSGNFTGPGMSQN--IEASLLLDNN 144 (358)
T ss_dssp CBCCEEEEEEETTEEEEEEESCCBSTTTTTTS--BEEEEEECHH
T ss_pred ecchhhhcccCCCceEEEEecCCccccccccc--eeEEEEEcCC
Confidence 678888765 67889999999999999866 9999999765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 852 | ||||
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 2e-12 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-11 | |
| d1v0wa1 | 258 | d.136.1.2 (A:6-263) Phospholipase D {Streptomyces | 7e-11 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 8e-11 | |
| d1v0wa2 | 246 | d.136.1.2 (A:264-514) Phospholipase D {Streptomyce | 3e-10 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 4e-10 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 4e-10 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 1e-09 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 1e-08 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 1e-07 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 2e-07 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 2e-06 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 5e-06 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 5e-06 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 9e-06 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 1e-05 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 3e-05 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 8e-05 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 8e-04 |
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 63.2 bits (153), Expect = 2e-12
Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 39/167 (23%)
Query: 15 GSAASDEPVFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHS 74
GS+ S P HG L++ ++ AK L + D +
Sbjct: 1 GSSGSSGP---HGTLEVVLVSAKGLEDADFLN---------------------------- 29
Query: 75 MITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGA-E 133
+PYV + P W+E F V+ L+ + D D+ +
Sbjct: 30 --NMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDD 87
Query: 134 LIGVVQIPVEKILCGNEV-DDWFPIAGSYGKNLKPFPQLHVSMQYKP 179
+G IP+E + + + + K+ + ++ V++ +KP
Sbjct: 88 AVGEATIPLEPVFVEGSIPPTAYNV----VKDEEYKGEIWVALSFKP 130
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.5 bits (146), Expect = 2e-11
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCL--SGATVAQTRVISNCENPFWDEHFCVPVAHSVVN-- 119
+ L TS+PYV V L +T+V NP ++E F V +S +
Sbjct: 41 IQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGK 100
Query: 120 -LEFHVKDNDILGA-ELIGVVQIPVEKILCGNEVDDWFPI 157
L V D D ++IG ++P+ + G+ ++W +
Sbjct: 101 TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140
|
| >d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Score = 61.3 bits (148), Expect = 7e-11
Identities = 26/221 (11%), Positives = 53/221 (23%), Gaps = 62/221 (28%)
Query: 240 QCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRV 299
+ ++ + A + I + F LK + +G ++
Sbjct: 64 RLLAKMTENIGNATRTVDISTLAPFPNGAFQDA------------IVAGLKESAAKGNKL 111
Query: 300 -LLLIWDDKTSHDNLFIKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVV 358
+ ++ + M + R ++ K
Sbjct: 112 KVRILVGAAPVYH---------MNVIPSKYRDELTAKLGKAAENITLNVASMTTSK---- 158
Query: 359 GTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNP 418
+H K ++VD SA GG++ Y H
Sbjct: 159 TAFSWNHSKILVVD--------GQSALTGGINSWKDDYLDTTH----------------- 193
Query: 419 SLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTK 459
P D+ + GPAA + W + +
Sbjct: 194 -----------PVSDVDLALTGPAAGSAGRYLDTLWTWTCQ 223
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.2 bits (140), Expect = 8e-11
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 12/104 (11%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCL----SGATVAQTRVISNCENPFWDEHFCVPVAHSV-- 117
+ L R NPYV + S +T+ + P W++ F H
Sbjct: 21 LGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF 80
Query: 118 --VNLEFHVKDNDILGA---ELIGVVQIPVEKILCGNEVDDWFP 156
LE + D + E +G + I +E L ++ W+
Sbjct: 81 RERMLEITLWDQARVREEESEFLGEILIELETAL-LDDEPHWYK 123
|
| >d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Score = 59.4 bits (143), Expect = 3e-10
Identities = 28/201 (13%), Positives = 46/201 (22%), Gaps = 31/201 (15%)
Query: 526 DVEEAVAQNLVCAKDLKVDKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGAD 585
+ N +D SA + SA+ I I Q + P Y D
Sbjct: 34 KCVVGLHDNTNADRDYDTVNPEESALRALVASAKGHIEISQQDLNATCPPLPRYDIRLYD 93
Query: 586 NLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAAVQEILYWQGQTMSMMYKIVAQ 645
L V +V+ + Y +
Sbjct: 94 ALAAK-----------MAAGVKVRIVVSDPANRGAVGSG--------------GYSQIKS 128
Query: 646 ALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHAK 705
+ + G ++A Q R+ + H K
Sbjct: 129 LSEISDTLRNRLAN------ITGGQQAAKTAMCSNLQLATFRSSPNGKWADGHPYAQHHK 182
Query: 706 GMIVDDEYVIMGSANINQRSL 726
+ VD +GS N+ L
Sbjct: 183 LVSVDSSTFYIGSKNLYPSWL 203
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (135), Expect = 4e-10
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 77 TSNPYVSVCLSGATVAQTRV--ISNCENPFWDEHFCVPVAHSVVN-LEFHVKDNDILGAE 133
T +PYV + +S ++ R +N NP W+E F + + N LE + D + + E
Sbjct: 26 TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 85
Query: 134 LIGVVQIPVEKILCGNEVDDWFPI 157
+G V + G + + F
Sbjct: 86 TLGTATFTVSSMKVGEKKEVPFIF 109
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 56.4 bits (135), Expect = 4e-10
Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 31/160 (19%)
Query: 23 VFLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYV 82
V +G L + I EA SL + + R +PY+
Sbjct: 2 VVFNGLLKIKICEAVSLKPTA-------------------WSLRDAVGPRPQTFLLDPYI 42
Query: 83 SVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIP 141
++ + + + QT +P W + F V + E V + +G + + I
Sbjct: 43 ALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKI-ELAVFHDAPIGYDDFVANCTIQ 101
Query: 142 VEKIL--CGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179
E++L +DW L+P +++V +
Sbjct: 102 FEELLQNGSRHFEDWID--------LEPEGKVYVIIDLSG 133
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.1 bits (132), Expect = 1e-09
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 64 KKTRGLSGRHSMITSNPYVSV----CLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVN 119
+ + L S+PYV + + +T+ I NP W+E F + S +
Sbjct: 22 RDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKD 81
Query: 120 --LEFHVKDNDILGA-ELIGVVQIPVEKILCGNEVDDWFP 156
L + D D+ + +G + + + L VD WF
Sbjct: 82 RRLSVEIWDWDLTSRNDFMGSLSFGISE-LQKAGVDGWFK 120
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.7 bits (123), Expect = 1e-08
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 15/124 (12%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFH 123
KK + + N YV++ + T + P W++ F + + L
Sbjct: 9 KKAKFDGAQEKF---NTYVTLK-VQNVKSTTIAVRGS-QPSWEQDFMFEINRLDLGLTVE 63
Query: 124 VKDNDILGAELIGVVQIPVEKILCGNE--VDDWFPIAGS--------YGKNLKPFPQLHV 173
V + ++ ++G V IP+ I NE +W + G F ++ +
Sbjct: 64 VWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILL 123
Query: 174 SMQY 177
+
Sbjct: 124 DAHF 127
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.1 bits (116), Expect = 1e-07
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 22/137 (16%)
Query: 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVC 85
G+L + IL+A++L D S R + S +
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKR---------- 66
Query: 86 LSGATVAQTRVISNCENPFWDEHFCVPVAHSV----VNLEFHVKDNDILGA-ELIGVVQI 140
+T+ + NP W++ LE V D D + + +G V I
Sbjct: 67 -------RTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLI 119
Query: 141 PVEKILCGNEVDDWFPI 157
+ + W+P+
Sbjct: 120 DLSSTSHLDNTPRWYPL 136
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.7 bits (115), Expect = 2e-07
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISNCENPFWDEHFCVPVAHSVVN 119
+ L+ + S+P+V + L +T++ NP ++E F + HS +
Sbjct: 22 IRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLA 81
Query: 120 ---LEFHVKDNDILGA-ELIGVVQIPVEKILCGNEVDDWFPIAGSYGK 163
L+ V D DI + + IG Q+ + G + W+ + K
Sbjct: 82 KKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLKNKDK 127
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (107), Expect = 2e-06
Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 35/152 (23%)
Query: 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCL 86
G L + +L+A L D S+P+ +
Sbjct: 6 GILQVKVLKAADLLAADFSG------------------------------KSDPFC-LLE 34
Query: 87 SGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGA-ELIGVVQIPVEKI 145
G QT + NP W++ F P+ LE V D D + +G V IP+ I
Sbjct: 35 LGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSI 94
Query: 146 LCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177
G + + + + +++ M
Sbjct: 95 RDG--QPNCYVLKNKDLEQ-AFKGVIYLEMDL 123
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (105), Expect = 5e-06
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 9/117 (7%)
Query: 67 RGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKD 126
+ + + +PYV V + G + +T +N +P W + V V F V
Sbjct: 16 KLKENKKNWFGPSPYVEVTVDGQSK-KTEKCNNTNSPKWKQPLTVIVTPVSKL-HFRVWS 73
Query: 127 NDILGA-ELIGVVQIPVEKILCGN-----EVDDWFPIAGSYGKNLKPFPQLHVSMQY 177
+ L + L+G + + + L N EV + G + L + +
Sbjct: 74 HQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPT-ETIGDLSICLDG 129
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (104), Expect = 5e-06
Identities = 14/101 (13%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCL---SGATVAQTRVISNCENPFWDEHFCVPVAHSVVN- 119
+ + + YV + +G+ AQT + + W+E +P+A +
Sbjct: 33 LEAVTSNHDGGC---DCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPT 89
Query: 120 --LEFHVKDNDILGAE-LIGVVQIPVEKILCGNEVDDWFPI 157
L ++ D + G +++ ++ W +
Sbjct: 90 ATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.9 bits (103), Expect = 9e-06
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 10/108 (9%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCLSGATV----AQTRVISNCENPFWDEHFCVPVAHSVV- 118
K R L S+PYV V L A +T V N ++E F + +
Sbjct: 22 LKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLE 81
Query: 119 --NLEFHVKDNDILGA-ELIGVVQIPVEKILCGNEVDDWFPIAGSYGK 163
++EF V D++ E+IG + + G+ W I +
Sbjct: 82 EISVEFLVLDSERGSRNEVIGRLVLGATAE--GSGGGHWKEICDFPRR 127
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 64 KKTRGLSGRHSM-ITSNPYVSVCL--SGATVAQTRVISNCENPFWDEHFCVPV----AHS 116
K+ RGL +TS+PY+ + + +TRV+ +P +DE F
Sbjct: 29 KEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQ 88
Query: 117 VVNLEFHVKDNDILGA-ELIGVVQIPVEKI 145
+ L F + D ++IG V IP+ I
Sbjct: 89 ELALHFTILSFDRFSRDDIIGEVLIPLSGI 118
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.4 bits (99), Expect = 3e-05
Identities = 28/109 (25%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 77 TSNPYVSVCLSGA----TVAQTRVISNCE-NPFWDEHFCVPVAHSVVN-LEFHVKDNDIL 130
+P V V + G QT VI+N NP WD F V + + F V+D D
Sbjct: 26 IVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSS 85
Query: 131 GA-ELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178
+ IG IP + G + G P L V + +
Sbjct: 86 SKNDFIGQSTIPWNSLKQGYR---HVHLLSKNGDQH-PSATLFVKISIQ 130
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (95), Expect = 8e-05
Identities = 24/121 (19%), Positives = 38/121 (31%), Gaps = 20/121 (16%)
Query: 69 LSGRH-SMITSNPYVSVCLSGA-------TVAQTRVISNCENPFWDEHFCVPVAHSVVN- 119
+SG+ S + YV V L G + +N NP W E V +
Sbjct: 8 ISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL 67
Query: 120 --LEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQL--HVSM 175
L V + + +G IP+ + G + L P L + M
Sbjct: 68 ASLRVAVMEEG---NKFLGHRIIPINALNSGYH---HLCLHSESNMPL-TMPALFIFLEM 120
Query: 176 Q 176
+
Sbjct: 121 K 121
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.6 bits (89), Expect = 8e-04
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 10/108 (9%)
Query: 64 KKTRGLSGRHSMITSNPYVSVCL----SGATVAQTRVISNCENPFWDEHFCVPVAHS--- 116
+ + L S+PYV + L +T + N NP+++E F V
Sbjct: 32 LEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQ 91
Query: 117 VVNLEFHVKDNDILGA-ELIGVVQIPVEKILCGNEVDDWFPIAGSYGK 163
V + V D D +G + IG V + G E+ W + + +
Sbjct: 92 KVQVVVTVLDYDKIGKNDAIGKVFVGYNST--GAELRHWSDMLANPRR 137
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 852 | |||
| d1v0wa1 | 258 | Phospholipase D {Streptomyces sp. [TaxId: 1931]} | 99.9 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.78 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.74 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.74 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.68 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.64 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.63 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.62 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.59 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.58 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.58 | |
| d1v0wa2 | 246 | Phospholipase D {Streptomyces sp. [TaxId: 1931]} | 99.56 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.53 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.48 | |
| d1byra_ | 152 | Nuclease Nuc {Salmonella typhimurium [TaxId: 90371 | 99.47 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.46 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.45 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.44 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.4 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.39 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.37 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.37 | |
| d1v0wa2 | 246 | Phospholipase D {Streptomyces sp. [TaxId: 1931]} | 99.37 | |
| d1byra_ | 152 | Nuclease Nuc {Salmonella typhimurium [TaxId: 90371 | 99.35 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.23 | |
| d1v0wa1 | 258 | Phospholipase D {Streptomyces sp. [TaxId: 1931]} | 99.17 | |
| d2o8ra3 | 188 | Polyphosphate kinase, PPK {Porphyromonas gingivali | 95.9 | |
| d1xdpa3 | 187 | Polyphosphate kinase, PPK {Escherichia coli [TaxId | 94.74 | |
| d2o8ra3 | 188 | Polyphosphate kinase, PPK {Porphyromonas gingivali | 91.78 | |
| d1xdpa3 | 187 | Polyphosphate kinase, PPK {Escherichia coli [TaxId | 91.26 | |
| d2o8ra4 | 186 | Polyphosphate kinase, PPK {Porphyromonas gingivali | 86.23 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 82.99 | |
| d1xdpa4 | 187 | Polyphosphate kinase, PPK {Escherichia coli [TaxId | 82.16 | |
| d1xdpa4 | 187 | Polyphosphate kinase, PPK {Escherichia coli [TaxId | 80.38 |
| >d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Probab=99.90 E-value=2e-24 Score=225.31 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=115.2
Q ss_pred hhhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcC--CeEEEEEeCCCccccccccc
Q 045478 239 GQCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEG--VRVLLLIWDDKTSHDNLFIK 316 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~G--V~VriLvwD~~~s~~~~~~~ 316 (852)
+++|++|+++|++||++|+|++|+++++- ..+..|.++|++||+|| |+||||+ |..++......
T Consensus 63 ~~~~~~~~~~I~~A~~~I~i~~~~~~pd~------------~~~~~i~~aL~~aA~rG~~V~VriL~-d~~gs~~~~~~- 128 (258)
T d1v0wa1 63 KRLLAKMTENIGNATRTVDISTLAPFPNG------------AFQDAIVAGLKESAAKGNKLKVRILV-GAAPVYHMNVI- 128 (258)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCCH------------HHHHHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCCCH-
T ss_pred HHHHHHHHHHHHHhccEEEEEEEEEcCCc------------hHHHHHHHHHHHHHhCCCCeEEEEEe-CCccccccccc-
Confidence 67899999999999999999999876531 12468999999999999 9999997 88877542100
Q ss_pred ccccccCCcHHHHhhhcC----CCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCC
Q 045478 317 TEGVMQTHDEETRKFFKH----SSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLC 392 (852)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~----~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~ 392 (852)
....++.|.. .++.+.+...... .....+.+||+|++|||++ +|||||+||+
T Consensus 129 --------~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~rnH~Ki~VVDg~--------~a~vGG~Ni~ 184 (258)
T d1v0wa1 129 --------PSKYRDELTAKLGKAAENITLNVASMT--------TSKTAFSWNHSKILVVDGQ--------SALTGGINSW 184 (258)
T ss_dssp --------HHHHHHHHHHHHGGGGGGEEEEEEEEC--------SBTTTTBCBCCCEEEETTT--------EEEEESCCCC
T ss_pred --------hHHHHHHHHHhccceeecccccccccc--------ccccccccccceEEEEcCC--------EEEECCcccC
Confidence 1123333332 2332221110000 0112346899999999998 9999999999
Q ss_pred CCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHHHHHHHHHHHHHhhhhhhh
Q 045478 393 DGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAAYDILINFEQRWRRSTKWR 461 (852)
Q Consensus 393 ~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa~dl~~~F~~rW~~~~~~~ 461 (852)
+++|+.. ..||||++++|+||+|.++++.|.++|+.+++.+
T Consensus 185 ~~~~~~~----------------------------~~~w~D~~~~v~Gp~v~~~~~~F~~~W~~~~~e~ 225 (258)
T d1v0wa1 185 KDDYLDT----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNK 225 (258)
T ss_dssp HHHHTSS----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccCC----------------------------CCCeeeeEEEEECHHHHHHHHHHHHHHHHHhCCC
Confidence 9888641 1379999999999999999999999999988764
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=9.2e-19 Score=162.53 Aligned_cols=118 Identities=24% Similarity=0.326 Sum_probs=103.8
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
|.|.|+|++|++|++++..+. +||||++.+++.. .||+++.++.||.||
T Consensus 6 G~L~V~v~~A~~L~~~d~~g~------------------------------~Dpyv~v~~~~~~-~~T~~~~~t~nP~wn 54 (126)
T d2ep6a1 6 GILQVKVLKAADLLAADFSGK------------------------------SDPFCLLELGNDR-LQTHTVYKNLNPEWN 54 (126)
T ss_dssp EEEEEEEEEEESCCCSSSSSC------------------------------CCEEEEEEETTEE-EECCCCSSCSSCCCC
T ss_pred EEEEEEEEEeECCCCCCCCCC------------------------------cCeEEEEEcCCeE-EEEEeeCCceeEEEE
Confidence 899999999999999988776 8999999999877 899999999999999
Q ss_pred eEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 107 EHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 107 E~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
|+|.|.+..+...+.|+|||++.++ +++||++.|++.++..|. ..|+.|.....+. +..|+|+|+|+|.
T Consensus 55 e~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~i 124 (126)
T d2ep6a1 55 KVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLI 124 (126)
T ss_dssp EEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEE
T ss_pred EEEEEEEeccCceeEEEEEEccCCcCcceEEEEEEEHHHCCCCC--ceEEEccccCCCC-ceeEEEEEEEEEE
Confidence 9999999888888999999999888 899999999999998764 4788885444332 4568999999875
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.74 E-value=7.6e-18 Score=158.39 Aligned_cols=129 Identities=20% Similarity=0.394 Sum_probs=104.9
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCC
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENP 103 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP 103 (852)
+.+|.|.|+|++|++|++++.... ... ........+||||+|.+++..+.+|+++.++.||
T Consensus 3 ~~~G~L~v~I~~A~~L~~~~~~~~---~~~----------------~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P 63 (136)
T d1gmia_ 3 VFNGLLKIKICEAVSLKPTAWSLR---DAV----------------GPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSP 63 (136)
T ss_dssp CEEEEEEEEEEEEESCCCCHHHHC---C-C----------------CSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSC
T ss_pred cEEEEEEEEEEEeECCCccccccc---ccc----------------cccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCc
Confidence 579999999999999998754221 000 0112223489999999999888999999999999
Q ss_pred eeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccCC--CceeeeeeeccCCCCCCCCCCEEEEEEEeeec
Q 045478 104 FWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILCG--NEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPI 180 (852)
Q Consensus 104 ~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g--~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~ 180 (852)
.|||+|.|.+.+ ...++|+|+|.+.++ +++||.+.|++.++... ...+.|++| ++.|+|++++++++.
T Consensus 64 ~Wne~f~f~v~~-~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L--------~p~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 64 AWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL--------EPEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC--------BSSCEEEEEEEEEEE
T ss_pred cCccEEEEEEec-CCceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeC--------CCCcEEEEEEEEEeC
Confidence 999999999864 567899999999988 89999999999999754 346789998 246899999999875
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.74 E-value=3.7e-18 Score=160.58 Aligned_cols=123 Identities=23% Similarity=0.457 Sum_probs=105.9
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeec-CCCCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVIS-NCENP 103 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~-~s~nP 103 (852)
..|+|+|+|++|++|++++.++. +||||++.+++.. .+|+++. ++.||
T Consensus 8 p~G~L~V~v~~a~~L~~~d~~g~------------------------------~Dpyv~v~~~~~~-~~t~~~~~~~~nP 56 (136)
T d1wfja_ 8 PHGTLEVVLVSAKGLEDADFLNN------------------------------MDPYVQLTCRTQD-QKSNVAEGMGTTP 56 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCS------------------------------SCCCEEEESSSCE-EECCCCTTCCSSC
T ss_pred CcEEEEEEEEEeeCCCCCCCCCC------------------------------CCccEEEEEeeee-EEEEEEecCCCcE
Confidence 48999999999999999998776 8999999998876 6888886 58899
Q ss_pred eeeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccC-CCceeeeeeeccCCCCCCCCCCEEEEEEEeeecC
Q 045478 104 FWDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILC-GNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKPIG 181 (852)
Q Consensus 104 ~WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~-g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~~~ 181 (852)
.|||+|.|.+......|+|+|||++.++ +++||.+.||+.++.. +.....|+++.. .+ +..|+|+|++.|.|..
T Consensus 57 ~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~-~~---~~~G~i~l~l~~~p~~ 132 (136)
T d1wfja_ 57 EWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK-DE---EYKGEIWVALSFKPSG 132 (136)
T ss_dssp EEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEE-TT---EEEEEEEEEEEEEECC
T ss_pred EEeeEEEEEEcCccceEEEEEEEecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecC-CC---ccCEEEEEEEEEEeCC
Confidence 9999999999988888999999999987 8999999999999864 455577999853 33 4569999999999864
Q ss_pred C
Q 045478 182 Q 182 (852)
Q Consensus 182 ~ 182 (852)
.
T Consensus 133 p 133 (136)
T d1wfja_ 133 P 133 (136)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=7.9e-17 Score=149.20 Aligned_cols=117 Identities=21% Similarity=0.330 Sum_probs=99.4
Q ss_pred eEEEEEEEEecCCCCCCC---cchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe--eEEEeeeecCCC
Q 045478 27 GDLDLSILEAKSLPNMDL---ITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA--TVAQTRVISNCE 101 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~--~~~rT~vi~~s~ 101 (852)
+.|.|+|++|++|+.... ++. +||||++.+++. ...||+++.++.
T Consensus 3 ~~l~V~v~~a~~L~~~~~~d~~~~------------------------------~Dpyv~v~l~~~~~~~~~T~~~~~t~ 52 (126)
T d1rlwa_ 3 HKFTVVVLRATKVTKGAFGDMLDT------------------------------PDPYVELFISTTPDSRKRTRHFNNDI 52 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCC------------------------------CCEEEEEECTTSTTCCEECCCCTTCS
T ss_pred cEEEEEEEEccCCCCccccccCCC------------------------------CCcEEEEEECCcccceeEeeecCCCc
Confidence 579999999999986432 233 899999999752 458999999999
Q ss_pred CCeeeeEEEEeecCCC-ceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 102 NPFWDEHFCVPVAHSV-VNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 102 nP~WnE~f~~~~~~~~-~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
||.|||+|.|.+.... ..+.|+|+|.+..++++||.+.|+|.++..|...+.||+|. + ...|.|++++++.|
T Consensus 53 nP~wne~f~f~i~~~~~~~L~v~V~d~d~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~-~-----~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 53 NPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN-Q-----VTEMVLEMSLEVAS 125 (126)
T ss_dssp SCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEET-T-----TEEEEEEEEEECCC
T ss_pred cceeceeeeecccCcccCcEEEEEEECCCCCCCeEEEEEEEHHHccCCCeEEEEEEcc-C-----CCeEEEEEEEEEEe
Confidence 9999999999997655 46799999999888999999999999999999999999993 2 23589999998876
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=5e-16 Score=145.14 Aligned_cols=123 Identities=21% Similarity=0.338 Sum_probs=98.4
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCe
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPF 104 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~ 104 (852)
+.+.|.|+|++|+++++.+..++ +||||+|.+++.. .||+++.++.||.
T Consensus 4 ~~~~L~v~v~~A~~~~~~~~~~~------------------------------~dpyv~v~~~~~~-~kT~v~~~t~nP~ 52 (133)
T d2nq3a1 4 MKSQLQITVISAKLKENKKNWFG------------------------------PSPYVEVTVDGQS-KKTEKCNNTNSPK 52 (133)
T ss_dssp CCEEEEEEEEEEEECCCC--CCC------------------------------CCEEEEEEETTEE-EECCCCSSCSSCE
T ss_pred cceEEEEEEEEeECCCcCCCCCC------------------------------cCeEEEEEECCeE-EeeEEEEecccEE
Confidence 35889999999999998877665 8999999999886 8999999999999
Q ss_pred eeeEEEEeecCCCceEEEEEEecCCCC-CceeeeEeeeceeccC---CCc--eeeeeeeccCCCCCCCCCCEEEEEEEee
Q 045478 105 WDEHFCVPVAHSVVNLEFHVKDNDILG-AELIGVVQIPVEKILC---GNE--VDDWFPIAGSYGKNLKPFPQLHVSMQYK 178 (852)
Q Consensus 105 WnE~f~~~~~~~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~---g~~--~~~w~~L~~~~g~~~k~~g~l~l~l~f~ 178 (852)
|||.|.|++.. ...+.|+|||++.++ +++||++.|++.++.. +.. ...|+.+... .++.+..|+|.|.+.+.
T Consensus 53 wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~-~~~~~~~G~L~v~l~~~ 130 (133)
T d2nq3a1 53 WKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-KEPTETIGDLSICLDGL 130 (133)
T ss_dssp EEEEEEEEECT-TCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-SCTTSEEEEEEEEEESE
T ss_pred EcceEEEEEEe-cceeEEEEEEccCCCCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC-CCCceEEEEEEEEEeeE
Confidence 99999999865 567999999999998 8999999999998853 322 3334555333 33346678999988876
Q ss_pred ec
Q 045478 179 PI 180 (852)
Q Consensus 179 ~~ 180 (852)
.+
T Consensus 131 ~~ 132 (133)
T d2nq3a1 131 QL 132 (133)
T ss_dssp EC
T ss_pred Ec
Confidence 54
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=7.4e-16 Score=143.79 Aligned_cols=105 Identities=26% Similarity=0.404 Sum_probs=90.2
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC----CeeEEEeeeecCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS----GATVAQTRVISNC 100 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~----~~~~~rT~vi~~s 100 (852)
-.+.|.|+|++|++|++++..+. +||||+|.+. +....||+++.++
T Consensus 13 ~~~~L~V~V~~a~~L~~~d~~g~------------------------------~DpYv~v~l~~~~~~~~~~kT~v~~~t 62 (132)
T d1a25a_ 13 DREVLIVVVRDAKNLVPMDPNGL------------------------------SDPYVKLKLIPDPKSESKQKTKTIKCS 62 (132)
T ss_dssp SSSEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEEESCTTCSSCEECCCCSSC
T ss_pred cCCEEEEEEEeeeCCCCCCCCCC------------------------------cCeEEEEEEccCCCCccccEEeeecCC
Confidence 35789999999999999987766 8999999983 2345899999999
Q ss_pred CCCeeeeEEEEeecCC--CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccC
Q 045478 101 ENPFWDEHFCVPVAHS--VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGS 160 (852)
Q Consensus 101 ~nP~WnE~f~~~~~~~--~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~ 160 (852)
.||.|||+|.|.+... ...+.|+|+|.+.++ +++||.+.|++.++..+ ..++||+|.+.
T Consensus 63 ~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~ 124 (132)
T d1a25a_ 63 LNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ 124 (132)
T ss_dssp SSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred CCCccceEEEEEeEccccCCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCC-CCCeEEECCCC
Confidence 9999999999998764 346899999999988 89999999999998754 47899999753
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=2.7e-15 Score=138.64 Aligned_cols=116 Identities=17% Similarity=0.362 Sum_probs=93.3
Q ss_pred eEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCeeEEEeeeecCCCCCeee
Q 045478 27 GDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGATVAQTRVISNCENPFWD 106 (852)
Q Consensus 27 G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~~~~rT~vi~~s~nP~Wn 106 (852)
+.|.|+|.+|++|+.++ + .||||+|.+++.+ .+|+++++ .||.||
T Consensus 2 ~~L~V~v~~a~~l~~~~---~------------------------------~dpYv~l~~~~~k-~~T~~~k~-~nP~Wn 46 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE---K------------------------------FNTYVTLKVQNVK-STTIAVRG-SQPSWE 46 (128)
T ss_dssp EEEEEEEEEEECSSCGG---G------------------------------CEEEEEEEETTEE-EECCCEES-SSCEEE
T ss_pred eEEEEEEEEEECCCCCC---C------------------------------cCeEEEEEeCCEE-EEEEEecC-CCCeEE
Confidence 57999999999999765 2 7999999999876 88988865 599999
Q ss_pred eEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceeccCC--CceeeeeeeccCC--------CCCCCCCCEEEEEEE
Q 045478 107 EHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKILCG--NEVDDWFPIAGSY--------GKNLKPFPQLHVSMQ 176 (852)
Q Consensus 107 E~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g--~~~~~w~~L~~~~--------g~~~k~~g~l~l~l~ 176 (852)
|+|.|.+..+...|.|+|||++..++++||++.|||.++..+ ...+.||+|..+. |........|.++++
T Consensus 47 e~f~f~v~~~~~~L~v~V~d~~~~~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~ 126 (128)
T d2cjta1 47 QDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAH 126 (128)
T ss_dssp EEEEEEECCCSSEEEEEEEECCSSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEE
T ss_pred EEEEEeeccccceEEEEEEeCCCcCCcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEE
Confidence 999999998888899999999998899999999999999743 3356799995332 112223456777776
Q ss_pred e
Q 045478 177 Y 177 (852)
Q Consensus 177 f 177 (852)
|
T Consensus 127 ~ 127 (128)
T d2cjta1 127 F 127 (128)
T ss_dssp E
T ss_pred c
Confidence 6
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=2.4e-15 Score=142.31 Aligned_cols=103 Identities=28% Similarity=0.479 Sum_probs=90.4
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--CeeEEEeeeecCCCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GATVAQTRVISNCENP 103 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~~~~rT~vi~~s~nP 103 (852)
.+.|.|+|++|++|++++..+. +||||+|.+. +....||+++.++.||
T Consensus 33 ~~~L~V~V~~a~~L~~~~~~g~------------------------------~dpyV~v~l~~~~~~~~kT~~~~~t~~P 82 (143)
T d1rsya_ 33 NNQLLVGIIQAAELPALDMGGT------------------------------SDPYVKVFLLPDKKKKFETKVHRKTLNP 82 (143)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEEETTCCSCEECCCCTTCSSC
T ss_pred CCEEEEEEEEccCCCCCCCCCC------------------------------CCeEEEEEEcCCCCeeEEEEEeccccCc
Confidence 5789999999999998887665 8999999983 3345899999999999
Q ss_pred eeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeec
Q 045478 104 FWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIA 158 (852)
Q Consensus 104 ~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 158 (852)
.|||+|.|.+... ...|.|+|+|.+.++ +++||.+.|++.++..+...++|++|.
T Consensus 83 ~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 141 (143)
T d1rsya_ 83 VFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp EEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred ceeeeeEEEEEeeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence 9999999987643 457899999999888 889999999999999888889999994
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=4.9e-16 Score=146.83 Aligned_cols=107 Identities=24% Similarity=0.379 Sum_probs=90.8
Q ss_pred eeeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe-------------e
Q 045478 24 FLHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA-------------T 90 (852)
Q Consensus 24 ~l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~-------------~ 90 (852)
+-.|.|.|+|++|++|+.++..+. +||||+|++... .
T Consensus 15 y~~~~L~V~V~~A~~L~~~d~~g~------------------------------~DpyV~v~l~~~~~~~~~~~~~~~~~ 64 (142)
T d1rh8a_ 15 YDLGNLIIHILQARNLVPRDNNGY------------------------------SDPFVKVYLLPGRGQVMVVQNASAEY 64 (142)
T ss_dssp EETTEEEEEEEEEESCCCCSSSSC------------------------------SCCEEEEEETTSSCCCEECCCCCHHH
T ss_pred EeCCEEEEEEEEeECCCCcCCCCC------------------------------CCcCEEEEEecCcccccccccCCCce
Confidence 356999999999999999887776 899999998421 1
Q ss_pred EEEeeeecCCCCCeeeeEEEEeecC----CCceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccC
Q 045478 91 VAQTRVISNCENPFWDEHFCVPVAH----SVVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGS 160 (852)
Q Consensus 91 ~~rT~vi~~s~nP~WnE~f~~~~~~----~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~ 160 (852)
..||+++.++.||.|||+|.|.... ....|.|+|+|.+.++ +++||.+.|+|.++..+...++||+|..+
T Consensus 65 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp HTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred eeeccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 2579999999999999999997433 3457899999999888 88999999999999988888999999644
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=7.4e-15 Score=136.69 Aligned_cols=119 Identities=27% Similarity=0.400 Sum_probs=93.5
Q ss_pred eeEEEEEEEEecCCCCCCC--cchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC----eeEEEeeeecC
Q 045478 26 HGDLDLSILEAKSLPNMDL--ITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG----ATVAQTRVISN 99 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~----~~~~rT~vi~~ 99 (852)
...|.|+|++|++|+.++. .+. +||||+|++.+ ....||+++.+
T Consensus 3 p~~l~V~Vi~a~~L~~~~~~~~~~------------------------------~DPyV~v~l~g~~~~~~~~~T~~v~~ 52 (131)
T d1qasa2 3 PERLRVRIISGQQLPKVNKNKNSI------------------------------VDPKVIVEIHGVGRDTGSRQTAVITN 52 (131)
T ss_dssp CEEEEEEEEEEESCCCCC-----C------------------------------CCEEEEEEEESSTTTCEEEECCCCSS
T ss_pred cEEEEEEEEEeeCCCCCCCCCCCC------------------------------cCeEEEEEEccCCCCcEEEEEEEEec
Confidence 3579999999999976543 333 89999999832 34589998876
Q ss_pred C-CCCeeeeEEEEeecCC-CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEE
Q 045478 100 C-ENPFWDEHFCVPVAHS-VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQ 176 (852)
Q Consensus 100 s-~nP~WnE~f~~~~~~~-~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~ 176 (852)
+ .||.|||+|.|.+..+ ...+.|+|+|+|..+ +++||++.||+.++..| ..|++|.+..|++. ..+.|.+.++
T Consensus 53 ~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~-~~~~L~v~i~ 128 (131)
T d1qasa2 53 NGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQH-PSATLFVKIS 128 (131)
T ss_dssp CSSSCEEEEEEEEEESCGGGCEEEEEEEECCTTTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEE-EEEEEEEEEE
T ss_pred ccCCceEEEEEEEEEEcchhceEEEEEEEecCCCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCC-CCCEEEEEEE
Confidence 4 6999999999988654 356799999999998 88999999999999866 36999988888753 3456666666
Q ss_pred ee
Q 045478 177 YK 178 (852)
Q Consensus 177 f~ 178 (852)
+.
T Consensus 129 ~~ 130 (131)
T d1qasa2 129 IQ 130 (131)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Probab=99.56 E-value=1.5e-15 Score=156.75 Aligned_cols=153 Identities=15% Similarity=0.103 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCC-C--
Q 045478 545 KSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNP-N-- 621 (852)
Q Consensus 545 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~-~-- 621 (852)
+..+.+++.+|++|+++|||++|||...+. | . +.....++.+|+++.+ +||+|+||++....... .
T Consensus 53 ~~~e~a~~~lI~~A~~~I~I~~q~~~~~~~--p-~------~~~~~~l~~AL~~aa~--RGV~Vrvll~~~~~~~~~~~~ 121 (246)
T d1v0wa2 53 NPEESALRALVASAKGHIEISQQDLNATCP--P-L------PRYDIRLYDALAAKMA--AGVKVRIVVSDPANRGAVGSG 121 (246)
T ss_dssp CHHHHHHHHHHHTCSSEEEEEESCSSCCTT--T-S------CSCCHHHHHHHHHHHH--TTCEEEEEECCGGGCC-----
T ss_pred ChHHHHHHHHHHhcCcEEEEEEEeecccCC--c-c------ccccHHHHHHHHHHHH--cCCcEEEEEecCCcccccccc
Confidence 346779999999999999999999986432 1 1 0012356677777754 67999999986321100 0
Q ss_pred -chhHHHHHHHHHHHHHHHH------HHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHh
Q 045478 622 -SAAVQEILYWQGQTMSMMY------KIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQK 694 (852)
Q Consensus 622 -~~~~~~~~~~~~~t~~~~~------~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (852)
....+.++....+...... ......+.. .+.++.+....... .
T Consensus 122 ~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~--~----------------- 171 (246)
T d1v0wa2 122 GYSQIKSLSEISDTLRNRLANITGGQQAAKTAMCS-----------NLQLATFRSSPNGK--W----------------- 171 (246)
T ss_dssp -CCCCSCTHHHHHHHHHHHHHHHTSHHHHHHHHHH-----------HEEEEECCSSSSSS--C-----------------
T ss_pred hHHHHHHHHHhcchhhhccccccchhhhhcccccc-----------ccceeeeecccCcc--c-----------------
Confidence 0000000000000000000 000011100 12222221111100 0
Q ss_pred hcceeEEEEeeEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecCcc
Q 045478 695 FRRFMIYVHAKGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQPHY 743 (852)
Q Consensus 695 ~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~ 743 (852)
..+..+++|+|+|||||++++|||+|||.||+ +|++++|++|..
T Consensus 172 ~~~~~~~lH~K~~VVD~~~~~VGS~Nl~p~~~-----~E~g~vi~~p~~ 215 (246)
T d1v0wa2 172 ADGHPYAQHHKLVSVDSSTFYIGSKNLYPSWL-----QDFGYIVESPEA 215 (246)
T ss_dssp TTSCCCCBCCEEEEETTTEEEEESCCSSCCCS-----BCEEEEEECHHH
T ss_pred cCCcccccceeEEEEcCCEEEEcCCcCCcchh-----ccCcEEEeCHHH
Confidence 01235799999999999999999999999986 799999999854
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=1.2e-14 Score=135.07 Aligned_cols=105 Identities=30% Similarity=0.334 Sum_probs=85.8
Q ss_pred eeeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--CeeEEEeeeecCCCC
Q 045478 25 LHGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GATVAQTRVISNCEN 102 (852)
Q Consensus 25 l~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~~~~rT~vi~~s~n 102 (852)
-.+.|.|+|++|++|++++..+. +||||+|++. +....||+++.++.|
T Consensus 16 ~~~~L~V~V~~a~~L~~~~~~g~------------------------------~dpyv~v~l~~~~~~~~kT~v~~~t~~ 65 (130)
T d1dqva1 16 GSDQLVVRILQALDLPAKDSNGF------------------------------SDPYVKIYLLPDRKKKFQTKVHRKTLN 65 (130)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSC------------------------------CCEEEEEECTTSTTSCEECCCCCSCSS
T ss_pred CCCEEEEEEEeeeCCccccCCCC------------------------------cceEEEEEEccCCCceEeceeEcCCCC
Confidence 35789999999999999887766 8999999994 334589999999999
Q ss_pred CeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceecc-C-CCceeeeeeecc
Q 045478 103 PFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKIL-C-GNEVDDWFPIAG 159 (852)
Q Consensus 103 P~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~-~-g~~~~~w~~L~~ 159 (852)
|.|||+|.|.+... ...|.|+|+|.+.++ +++||.+.|++.... . ......|++|++
T Consensus 66 P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~ 128 (130)
T d1dqva1 66 PIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128 (130)
T ss_dssp CEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred eeeeeEEEEEEchHHcCCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence 99999999997653 356899999999888 899999999864433 2 234557999963
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.4e-13 Score=129.05 Aligned_cols=101 Identities=17% Similarity=0.271 Sum_probs=86.2
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC---eeEEEeeeecCCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG---ATVAQTRVISNCEN 102 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~---~~~~rT~vi~~s~n 102 (852)
.+.|.|+|++|++|+. .+. +||||+|.+.+ ....||+++.++.|
T Consensus 25 ~~~L~V~v~~a~~L~~---~g~------------------------------~dpyVkv~l~~~~~~~~~kT~v~~~~~~ 71 (138)
T d1wfma_ 25 KAELFVTRLEAVTSNH---DGG------------------------------CDCYVQGSVANRTGSVEAQTALKKRQLH 71 (138)
T ss_dssp TTEEEEEEEEEECCCC---SSC------------------------------CCEEEEEEEEETTEEEEEECCCCCCCSS
T ss_pred CCEEEEEEEEcCCCCC---CCC------------------------------cCcEEEEEECCCCCccceeeeEECCCCC
Confidence 5789999999999953 233 89999999942 34579999999999
Q ss_pred CeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeecc
Q 045478 103 PFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAG 159 (852)
Q Consensus 103 P~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~ 159 (852)
|.|||.|.|.+... ...|.|+|+|.+.++ +++||++.|++.++..+...+.|++|..
T Consensus 72 P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~ 132 (138)
T d1wfma_ 72 TTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp EECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred ceEeeeEEEEeeehhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence 99999999998653 466899999999888 8999999999999987888899999954
|
| >d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Nuclease domain: Nuclease Nuc species: Salmonella typhimurium [TaxId: 90371]
Probab=99.47 E-value=1.1e-13 Score=131.92 Aligned_cols=134 Identities=16% Similarity=0.239 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccc
Q 045478 240 QCWEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEG 319 (852)
Q Consensus 240 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~ 319 (852)
...+.++++|.+|+++|+|+.|.|++ ..|.++|++|++|||+||||+ |..+.....
T Consensus 13 ~~~~~i~~~I~~A~~~I~I~~~~~~~-----------------~~i~~aL~~a~~rGV~Vril~-~~~~~~~~~------ 68 (152)
T d1byra_ 13 SARVLVLSAIDSAKTSIRMMAYSFTA-----------------PDIMKALVAAKKRGVDVKIVI-DERGNTGRA------ 68 (152)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSBCC-----------------HHHHHHHHHHHHTTCEEEEEE-ESTTCCSHH------
T ss_pred cHHHHHHHHHHhCCcEEEEEEEeecC-----------------HHHHHHHHHHHhcCCeEEEEE-Eeecccchh------
Confidence 56788999999999999999987743 479999999999999999997 776433211
Q ss_pred cccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCCccCCC
Q 045478 320 VMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDGRYDTP 399 (852)
Q Consensus 320 ~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~r~Dt~ 399 (852)
.......+...++.+..... ...+|.|++|||++ ++|+|+.|++...+.
T Consensus 69 -----~~~~~~~~~~~~~~~~~~~~----------------~~~~H~K~~ivD~~--------~~~~GS~N~t~~~~~-- 117 (152)
T d1byra_ 69 -----SIAAMNYIANSGIPLRTDSN----------------FPIQHDKVIIVDNV--------TVETGSFNFTKAAET-- 117 (152)
T ss_dssp -----HHHHHHHHHHTTCCEEEECS----------------SSCCCCCEEEETTT--------EEEEESCCBSHHHHH--
T ss_pred -----hHHHHHHhhhcccccccccc----------------ccccccceEEecCc--------eeEecccCCChHHHh--
Confidence 11223344455665553211 23678999999998 999999999873321
Q ss_pred CcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeC--hHHHHHHHHHHHHHhhhh
Q 045478 400 EHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEG--PAAYDILINFEQRWRRST 458 (852)
Q Consensus 400 ~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~G--paa~dl~~~F~~rW~~~~ 458 (852)
..++..+.+++ +++..+.+.|.+.|+.+.
T Consensus 118 ------------------------------~n~e~~~~i~~~~~v~~~~~~~F~~~w~~~~ 148 (152)
T d1byra_ 118 ------------------------------KNSENAVVIWNMPKLAESFLEHWQDRWNQGR 148 (152)
T ss_dssp ------------------------------TSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred ------------------------------cCCcceEEEEcCHHHHHHHHHHHHHHHhhCC
Confidence 12366777765 468999999999999654
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=4.7e-14 Score=132.13 Aligned_cols=107 Identities=25% Similarity=0.387 Sum_probs=88.4
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC----CeeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS----GATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~----~~~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|+.++..+. +||||+|++. .....||+++.++.
T Consensus 14 ~~~L~V~v~~a~nL~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~ 63 (137)
T d2cm5a1 14 QGGLIVGIIRCVHLAAMDANGY------------------------------SDPFVKLWLKPDMGKKAKHKTQIKKKTL 63 (137)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEEETC---CCEEECCCCCSCS
T ss_pred CCEEEEEEEEEECCCCCCCCCC------------------------------cCeEEEEEEEcCCccceeecCEeEcCCC
Confidence 5789999999999998876665 8999999983 22447999999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+... ...+.|+|+|.+.++ +++||++.|++..+. ...++|++|+...+++
T Consensus 64 ~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~~~~~~ 128 (137)
T d2cm5a1 64 NPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLKNKDKK 128 (137)
T ss_dssp SCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHHCTTCC
T ss_pred CCccceEEEEEeEHHHccccEEEEEeeeCCCCCCCCEEEEEEeCccccC--cchhhhhhHhhCCCCe
Confidence 999999999998653 356899999999887 899999999997653 4567899988766654
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=5.2e-14 Score=132.08 Aligned_cols=107 Identities=25% Similarity=0.390 Sum_probs=82.0
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEE--CCe--eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCL--SGA--TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l--~~~--~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|+.++..+. +||||+|.+ ++. ...||+++.++.
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~------------------------------~dpyvkv~l~~~~~~~~~~kT~~~~~t~ 63 (138)
T d1w15a_ 14 TNTLTVVVLKARHLPKSDVSGL------------------------------SDPYVKVNLYHAKKRISKKKTHVKKCTP 63 (138)
T ss_dssp TTEEEEEEEEEESCC------C------------------------------CCEEEEEEEEETTEEEEEEECCCCCSCS
T ss_pred CCEEEEEEEEeECCCCCCCCCC------------------------------cCEEEEEEEeCCcccCccccceeECCCC
Confidence 4789999999999999887665 899999998 332 346899999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+... ...|.|+|+|.+.++ +++||++.|++... +...++|+.|+...+++
T Consensus 64 ~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~--~~~~~hW~~ll~~~~k~ 128 (138)
T d1w15a_ 64 NAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE--GSGGGHWKEICDFPRRQ 128 (138)
T ss_dssp SEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCC--SHHHHHHHHHHHSTTCC
T ss_pred CCeECcEEEEEecHHHhCccEEEEEEEeCCCCCCCCEEEEEEEcchhC--CchHHHHHHHHhCCCCe
Confidence 999999999998653 345899999999887 89999999998753 44456677776655543
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.5e-13 Score=126.50 Aligned_cols=101 Identities=25% Similarity=0.439 Sum_probs=80.2
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC----CeeEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS----GATVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~----~~~~~rT~vi~~s~ 101 (852)
.+.|.|+|++|++|+.++..+. +||||+|++. .....||++++++.
T Consensus 13 ~~~L~V~V~~a~~L~~~~~~~~------------------------------~dpyVkv~l~~~~~~~~~~kT~~~~~t~ 62 (125)
T d2bwqa1 13 GHQLIVTILGAKDLPSREDGRP------------------------------RNPYVKIYFLPDRSDKNKRRTKTVKKTL 62 (125)
T ss_dssp TTEEEEEEEEEESCCCCTTSCC------------------------------BCEEEEEEEESSCSGGGEEECCCCSSBS
T ss_pred CCEEEEEEEEeECCCCcCCCCC------------------------------CCEEEEEEEeCCCCCccccccCEEcCCC
Confidence 4789999999999998776554 8999999982 23458999999999
Q ss_pred CCeeeeEEEEe-ecCC---CceEEEEEEecCCCC---CceeeeEeeeceeccCCCceeeeeee
Q 045478 102 NPFWDEHFCVP-VAHS---VVNLEFHVKDNDILG---AELIGVVQIPVEKILCGNEVDDWFPI 157 (852)
Q Consensus 102 nP~WnE~f~~~-~~~~---~~~l~~~V~d~d~~~---~~~iG~~~i~l~~l~~g~~~~~w~~L 157 (852)
||.|||+|.|. +... ...|.|+|+|.+.++ +++||++.|++.++...+ ..+||+|
T Consensus 63 ~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L 124 (125)
T d2bwqa1 63 EPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 124 (125)
T ss_dssp SCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred CCEEccEEEEeeeChhhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeC
Confidence 99999999997 3332 346899999988763 569999999999987544 4689998
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=6.6e-13 Score=124.42 Aligned_cols=104 Identities=27% Similarity=0.366 Sum_probs=83.1
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEEC--CeeEEEeeeecCCCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLS--GATVAQTRVISNCENP 103 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~--~~~~~rT~vi~~s~nP 103 (852)
.+.|.|+|++|++|+.++..+. ++||||++.+. +....||+++.++.||
T Consensus 21 ~~~L~V~V~~a~~L~~~d~~~~-----------------------------~~dpyV~v~l~~~~~~~~kT~v~~~t~nP 71 (138)
T d1ugka_ 21 RKAFVVNIKEARGLPAMDEQSM-----------------------------TSDPYIKMTILPEKKHKVKTRVLRKTLDP 71 (138)
T ss_dssp GTEEEEEEEEEESCCCCBTTTT-----------------------------BCEEEEEEEEETTTCSEEECCCCSSCSSC
T ss_pred CCEEEEEEEEecCCCCCCCCCC-----------------------------ccceEEEEEEcCCCCEeEeCeeEeCCCCC
Confidence 4779999999999998876553 17999999993 3344799999999999
Q ss_pred eeeeEEEEee-cC---CCceEEEEEEecCCCC-CceeeeEeeeceeccC-CCceeeeeeec
Q 045478 104 FWDEHFCVPV-AH---SVVNLEFHVKDNDILG-AELIGVVQIPVEKILC-GNEVDDWFPIA 158 (852)
Q Consensus 104 ~WnE~f~~~~-~~---~~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~-g~~~~~w~~L~ 158 (852)
.|||+|.|.. .. ....|.|+|+|.+.++ +++||.+.|++.++.. ......|..++
T Consensus 72 ~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~ 132 (138)
T d1ugka_ 72 AFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp EEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred ceeeEEEEeeeCHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence 9999999973 32 2346899999999888 8999999999999863 33445566553
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=8.3e-13 Score=126.57 Aligned_cols=90 Identities=33% Similarity=0.492 Sum_probs=77.1
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC--e--eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG--A--TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~--~--~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|+..+..+. +||||+|++.. . ...||+++.++.
T Consensus 24 ~~~L~V~V~~a~~L~~~~~~~~------------------------------~dpyV~v~l~~~~~~~~~~kT~v~~~t~ 73 (157)
T d1uowa_ 24 AGKLTVVILEAKNLKKMDVGGL------------------------------SDPYVKIHLMQNGKRLKKKKTTIKKNTL 73 (157)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC------------------------------CCEEEEEEEEETTEEEEEEECCCCCSCS
T ss_pred CCEEEEEEEEEEEcccccCCCC------------------------------CCeeEEEEEecCCccccceecccccCCC
Confidence 4789999999999998877665 89999999842 2 335899999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceec
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKI 145 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l 145 (852)
||.|||+|.|.+... ...+.|+|+|.+.++ +++||++.|++...
T Consensus 74 nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~ 121 (157)
T d1uowa_ 74 NPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121 (157)
T ss_dssp SCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred CcccCCeEEEEecHHHcCccEEEEEEcccCCCCCCceeEEEEEecccC
Confidence 999999999998754 346899999999988 89999999998653
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=9.1e-13 Score=120.72 Aligned_cols=90 Identities=14% Similarity=0.251 Sum_probs=76.3
Q ss_pred CCcEEEEEECCe----eEEEeeeecCCCCCeeeeEEEEeecCCCceEEEEEEecCCCCCceeeeEeeeceecc-----CC
Q 045478 78 SNPYVSVCLSGA----TVAQTRVISNCENPFWDEHFCVPVAHSVVNLEFHVKDNDILGAELIGVVQIPVEKIL-----CG 148 (852)
Q Consensus 78 sdpYv~v~l~~~----~~~rT~vi~~s~nP~WnE~f~~~~~~~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~-----~g 148 (852)
+||||+|.+.+. +..+|+++++|.||+|||+|.|.+.. ...+.|.|+|.| ++++|.+.|++.+|. .+
T Consensus 24 ~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d---d~~~g~~~i~l~~l~~~~~~~~ 99 (123)
T d1bdya_ 24 SQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA---EDPMSEVTVGVSVLAERCKKNN 99 (123)
T ss_dssp CCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET---TEEEEEEEEEHHHHHHHHHTTT
T ss_pred CCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc---ccccCccEEehhheeeccccCC
Confidence 899999999653 34679999999999999999999864 567899999975 679999999998885 36
Q ss_pred CceeeeeeeccCCCCCCCCCCEEEEEEEeee
Q 045478 149 NEVDDWFPIAGSYGKNLKPFPQLHVSMQYKP 179 (852)
Q Consensus 149 ~~~~~w~~L~~~~g~~~k~~g~l~l~l~f~~ 179 (852)
...+.|++| ++.|+|+++++|+.
T Consensus 100 ~~~~~W~~L--------~~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 100 GKAEFWLDL--------QPQAKVLMCVQYFL 122 (123)
T ss_dssp TEEEEEEEC--------BSSCEEEEEEEEEE
T ss_pred CcccEEEeC--------CCCEEEEEEEEEec
Confidence 678899998 35689999999975
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=1.4e-13 Score=130.32 Aligned_cols=108 Identities=31% Similarity=0.433 Sum_probs=87.7
Q ss_pred eeEEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECCe----eEEEeeeecCCC
Q 045478 26 HGDLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSGA----TVAQTRVISNCE 101 (852)
Q Consensus 26 ~G~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~~----~~~rT~vi~~s~ 101 (852)
.|.|.|+|++|++|++++..+. +||||+|++... ...||+++.++.
T Consensus 19 ~~~L~V~V~~a~nL~~~~~~~~------------------------------~dpyv~v~l~~~~~~~~~~kT~~~~~t~ 68 (145)
T d1dqva2 19 AGLLTVTIIKASNLKAMDLTGF------------------------------SDPYVKASLISEGRRLKKRKTSIKKNTL 68 (145)
T ss_dssp TTEEEEEEEEEESCCCCSSSSC------------------------------CCEEEEECCCTTCCTTSCEECCCCCSCS
T ss_pred CCEEEEEEEEEeCCCCcCCCCC------------------------------cCceEEEEEccCCccceeecCEEEeCCC
Confidence 4889999999999998877665 899999998542 236899999999
Q ss_pred CCeeeeEEEEeecCC---CceEEEEEEecCCCC-CceeeeEeeeceeccCCCceeeeeeeccCCCCC
Q 045478 102 NPFWDEHFCVPVAHS---VVNLEFHVKDNDILG-AELIGVVQIPVEKILCGNEVDDWFPIAGSYGKN 164 (852)
Q Consensus 102 nP~WnE~f~~~~~~~---~~~l~~~V~d~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~ 164 (852)
||.|||+|.|.+... ...+.|.|+|.+.++ +++||.+.|++..+. .....+|++|+...+++
T Consensus 69 ~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~l~~~p~~~ 134 (145)
T d1dqva2 69 NPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD-PHGREHWAEMLANPRKP 134 (145)
T ss_dssp SCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC-HHHHHHHHTSSSSSSSC
T ss_pred CceecceEEEEEehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcC-chhhHHHHHHHhCCCCe
Confidence 999999999987653 345799999999888 889999999998764 22356788887665544
|
| >d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Probab=99.37 E-value=2.1e-12 Score=132.84 Aligned_cols=160 Identities=19% Similarity=0.246 Sum_probs=97.0
Q ss_pred HHHHHHHHHhccceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccc
Q 045478 242 WEEICHAVLEARHLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLFIKTEGVM 321 (852)
Q Consensus 242 ~~~l~~aI~~Ak~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~~~~~~~~ 321 (852)
..++.++|++|+++|+|+.+.+.+.. .|. ...+..|.++|.++++|||+||||+ |..+.............
T Consensus 56 e~a~~~lI~~A~~~I~I~~q~~~~~~-------~p~-~~~~~~l~~AL~~aa~RGV~Vrvll-~~~~~~~~~~~~~~~~~ 126 (246)
T d1v0wa2 56 ESALRALVASAKGHIEISQQDLNATC-------PPL-PRYDIRLYDALAAKMAAGVKVRIVV-SDPANRGAVGSGGYSQI 126 (246)
T ss_dssp HHHHHHHHHTCSSEEEEEESCSSCCT-------TTS-CSCCHHHHHHHHHHHHTTCEEEEEE-CCGGGCC------CCCC
T ss_pred HHHHHHHHHhcCcEEEEEEEeecccC-------Ccc-ccccHHHHHHHHHHHHcCCcEEEEE-ecCCcccccccchHHHH
Confidence 45789999999999999987765421 010 0123689999999999999999998 87643221100000000
Q ss_pred cCCcH---HHHhhh-------------cCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEE
Q 045478 322 QTHDE---ETRKFF-------------KHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAF 385 (852)
Q Consensus 322 ~~~~~---~~~~~l-------------~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAf 385 (852)
....+ +...++ ...+..+........ ..+ ..+...++|.|++|||++ ++|
T Consensus 127 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~lH~K~~VVD~~--------~~~ 192 (246)
T d1v0wa2 127 KSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPN--GKW----ADGHPYAQHHKLVSVDSS--------TFY 192 (246)
T ss_dssp SCTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSSSS--SSC----TTSCCCCBCCEEEEETTT--------EEE
T ss_pred HHHHHhcchhhhccccccchhhhhccccccccceeeeecccC--ccc----cCCcccccceeEEEEcCC--------EEE
Confidence 00000 111111 112233332211110 000 112345899999999999 999
Q ss_pred EcccCCCCCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHH-HHHHH-HHHHHHhhhhh
Q 045478 386 IGGLDLCDGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAA-YDILI-NFEQRWRRSTK 459 (852)
Q Consensus 386 vGG~nl~~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa-~dl~~-~F~~rW~~~~~ 459 (852)
|||.||.. +| |+|+.+.|+||.+ ..+.+ .|...|..+..
T Consensus 193 VGS~Nl~p-~~----------------------------------~~E~g~vi~~p~~a~~l~~~~~~~~W~~s~~ 233 (246)
T d1v0wa2 193 IGSKNLYP-SW----------------------------------LQDFGYIVESPEAAKQLDAKLLDPQWKYSQE 233 (246)
T ss_dssp EESCCSSC-CC----------------------------------SBCEEEEEECHHHHHHHHHHTHHHHHHHHGG
T ss_pred EcCCcCCc-ch----------------------------------hccCcEEEeCHHHHHHHHHHHHHHHHHhccc
Confidence 99999976 44 3488999999955 45655 79999997644
|
| >d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Nuclease domain: Nuclease Nuc species: Salmonella typhimurium [TaxId: 90371]
Probab=99.35 E-value=9.1e-13 Score=125.41 Aligned_cols=118 Identities=21% Similarity=0.186 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCchh
Q 045478 545 KSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSAA 624 (852)
Q Consensus 545 ~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~~ 624 (852)
.++.++++++|++||+.|+|+.++|.+ .++..+|..+.+ +||+|+||+..... ....
T Consensus 12 ~~~~~~i~~~I~~A~~~I~I~~~~~~~------------------~~i~~aL~~a~~--rGV~Vril~~~~~~--~~~~- 68 (152)
T d1byra_ 12 GSARVLVLSAIDSAKTSIRMMAYSFTA------------------PDIMKALVAAKK--RGVDVKIVIDERGN--TGRA- 68 (152)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBCC------------------HHHHHHHHHHHH--TTCEEEEEEESTTC--CSHH-
T ss_pred ccHHHHHHHHHHhCCcEEEEEEEeecC------------------HHHHHHHHHHHh--cCCeEEEEEEeecc--cchh-
Confidence 467789999999999999999998862 245667777644 67999999985321 1110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEEe
Q 045478 625 VQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVHA 704 (852)
Q Consensus 625 ~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHS 704 (852)
.. .....+...++... .+ . ...++|+
T Consensus 69 --------~~-------~~~~~~~~~~~~~~--------~~------------~-------------------~~~~~H~ 94 (152)
T d1byra_ 69 --------SI-------AAMNYIANSGIPLR--------TD------------S-------------------NFPIQHD 94 (152)
T ss_dssp --------HH-------HHHHHHHHTTCCEE--------EE------------C-------------------SSSCCCC
T ss_pred --------hH-------HHHHHhhhcccccc--------cc------------c-------------------ccccccc
Confidence 11 11334445554321 00 0 0237899
Q ss_pred eEEEEcceeEEecCcCcccCCCCCCCCceeEEEEecC
Q 045478 705 KGMIVDDEYVIMGSANINQRSLEGSRDTEIAMGAYQP 741 (852)
Q Consensus 705 KlmIVDD~~~iIGSANln~RSm~~n~DsEi~v~i~d~ 741 (852)
|+||||++++++||+||+.+|+..| .|.++.+.+.
T Consensus 95 K~~ivD~~~~~~GS~N~t~~~~~~n--~e~~~~i~~~ 129 (152)
T d1byra_ 95 KVIIVDNVTVETGSFNFTKAAETKN--SENAVVIWNM 129 (152)
T ss_dssp CEEEETTTEEEEESCCBSHHHHHTS--CEEEEEEESC
T ss_pred ceEEecCceeEecccCCChHHHhcC--CcceEEEEcC
Confidence 9999999999999999999999855 9999999763
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2e-11 Score=111.35 Aligned_cols=109 Identities=21% Similarity=0.421 Sum_probs=80.9
Q ss_pred EEEEEEEEecCCCCCCCcchhhhcccccCCcccCCCccccCCCCCCCCcCCCcEEEEEECC-----eeEEEeeee--cCC
Q 045478 28 DLDLSILEAKSLPNMDLITESMRKCCNMCGHCRFPFKKTRGLSGRHSMITSNPYVSVCLSG-----ATVAQTRVI--SNC 100 (852)
Q Consensus 28 ~L~v~I~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdpYv~v~l~~-----~~~~rT~vi--~~s 100 (852)
+|.|+|++|++|+... .||||+|.+-+ .+..+|+++ .|+
T Consensus 2 tl~V~Visaq~L~~~~----------------------------------~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~ 47 (122)
T d2zkmx2 2 TLSITVISGQFLSERS----------------------------------VRTYVEVELFGLPGDPKRRYRTKLSPSTNS 47 (122)
T ss_dssp EEEEEEEEEESCCSSC----------------------------------CCEEEEEEEECCTTSCCCCEECCCCSSSCC
T ss_pred EEEEEEEEeeCCCCCC----------------------------------CCcEEEEEEECcCCCCCccEEEEEEEeCCe
Confidence 7999999999998542 79999999832 233556553 678
Q ss_pred CCCeeeeE-EEEe-ecC-CCceEEEEEEecCCCCCceeeeEeeeceeccCCCceeeeeeeccCCCCCCCCCCEEEEEEEe
Q 045478 101 ENPFWDEH-FCVP-VAH-SVVNLEFHVKDNDILGAELIGVVQIPVEKILCGNEVDDWFPIAGSYGKNLKPFPQLHVSMQY 177 (852)
Q Consensus 101 ~nP~WnE~-f~~~-~~~-~~~~l~~~V~d~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~g~~~k~~g~l~l~l~f 177 (852)
.||.|||. |.+. +.. ....+.|+|+|++ +++||++.||+..+..|. ++.+|.++.|++. ..+.|-+.++.
T Consensus 48 ~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d---~~~lG~~~ipl~~l~~Gy---R~vpL~~~~g~~l-~~~~L~v~i~~ 120 (122)
T d2zkmx2 48 INPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY---HHLCLHSESNMPL-TMPALFIFLEM 120 (122)
T ss_dssp SSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEE-EEEEEEEEEEE
T ss_pred ecceEcccEeEEEecCCCcccEEEEEEECCC---CCEEEEEEEEcccCcCCc---eEEEccCCCcCCC-CCceEEEEEEE
Confidence 99999976 4443 333 3457899999975 789999999999998774 7899998888764 34455554443
|
| >d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Probab=99.17 E-value=6.1e-12 Score=129.94 Aligned_cols=127 Identities=11% Similarity=0.084 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHHhccceEEEeecccccCCCCCCccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCch
Q 045478 544 DKSIHSAYVKAIRSAQHFIYIENQYFIGSSYHWPSYKNAGADNLIPMELALKIVSKINANERFSVYVVIPMWPEGNPNSA 623 (852)
Q Consensus 544 e~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~wp~~~~~~~~n~i~~~~a~~ia~~~~~~~~v~V~IvlP~~peg~~~~~ 623 (852)
.+.+..+++++|++||++|||+++||.+ +. .+..+++.+|.++.+++++|+|+|++...++- ....
T Consensus 62 ~~~~~~~~~~~I~~A~~~I~i~~~~~~p------d~-------~~~~~i~~aL~~aA~rG~~V~VriL~d~~gs~-~~~~ 127 (258)
T d1v0wa1 62 TKRLLAKMTENIGNATRTVDISTLAPFP------NG-------AFQDAIVAGLKESAAKGNKLKVRILVGAAPVY-HMNV 127 (258)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEEESSCC------CH-------HHHHHHHHHHHHHHHTTCCEEEEEEEECCC---CCCC
T ss_pred hHHHHHHHHHHHHHhccEEEEEEEEEcC------Cc-------hHHHHHHHHHHHHHhCCCCeEEEEEeCCcccc-cccc
Confidence 3678899999999999999999999863 21 12456777777776666669999999765431 1110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCceEEeeCCCCCCCCCCccccchhhhhHHHHHHHhhcceeEEEE
Q 045478 624 AVQEILYWQGQTMSMMYKIVAQALQDNGLSNKYHPQDYLSFYCLGKREAPPLDRSQMNQQTENRALAAAQKFRRFMIYVH 703 (852)
Q Consensus 624 ~~~~~~~~~~~t~~~~~~~i~~~L~~~Gv~~~~~p~~y~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 703 (852)
. .. .+.+.|.+.+++. .+..+++.+.+.... +...+.|
T Consensus 128 -~-------~~-------~~~~~l~~~~~~~--~~~~~~~~~~~~~~~-------------------------~~~~rnH 165 (258)
T d1v0wa1 128 -I-------PS-------KYRDELTAKLGKA--AENITLNVASMTTSK-------------------------TAFSWNH 165 (258)
T ss_dssp -H-------HH-------HHHHHHHHHHGGG--GGGEEEEEEEECSBT-------------------------TTTBCBC
T ss_pred -c-------hH-------HHHHHHHHhccce--eeccccccccccccc-------------------------ccccccc
Confidence 0 00 1133344433332 111123333221110 0123789
Q ss_pred eeEEEEcceeEEecCcCcccCCC
Q 045478 704 AKGMIVDDEYVIMGSANINQRSL 726 (852)
Q Consensus 704 SKlmIVDD~~~iIGSANln~RSm 726 (852)
+|+||||+++++|||.||.+..+
T Consensus 166 ~Ki~VVDg~~a~vGG~Ni~~~~~ 188 (258)
T d1v0wa1 166 SKILVVDGQSALTGGINSWKDDY 188 (258)
T ss_dssp CCEEEETTTEEEEESCCCCHHHH
T ss_pred ceEEEEcCCEEEECCcccCcccc
Confidence 99999999999999999976655
|
| >d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Porphyromonas gingivalis [TaxId: 837]
Probab=95.90 E-value=0.071 Score=49.08 Aligned_cols=137 Identities=15% Similarity=0.203 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHhcc-----ceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccc
Q 045478 240 QCWEEICHAVLEAR-----HLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLF 314 (852)
Q Consensus 240 ~~~~~l~~aI~~Ak-----~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~ 314 (852)
+.|+.+.+.|++|- .+|-|+-|.+.. ...|.++|.+||+.|-+|-++| .-...+.
T Consensus 33 ~sF~~vv~fl~eAA~DP~V~~Ik~TlYR~a~----------------~S~Ii~aLi~AA~nGK~Vtv~v-ELkARFD--- 92 (188)
T d2o8ra3 33 YTYDYVVRLLMEAAISPDVSEIRLTQYRVAE----------------NSSIISALEAAAQSGKKVSVFV-ELKARFD--- 92 (188)
T ss_dssp BCSHHHHHHHHHHHTCTTEEEEEEEESCCCS----------------CCHHHHHHHHHHHTTCEEEEEE-CCCSCC----
T ss_pred cccHHHHHHHHHHhcCCCccEEEEEEEEecC----------------CchHHHHHHHHHHcCCEEEEEE-echhhhh---
Confidence 34677788888885 578888776532 3699999999999999999998 4321110
Q ss_pred ccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCC-CCCCceEEEEcccCCCC
Q 045478 315 IKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPAS-GNNRKISAFIGGLDLCD 393 (852)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~-~~~~~~vAfvGG~nl~~ 393 (852)
...+-++.+.|+.+||+|.+- .+ .+--|.|+++|--+.. |...+..+++|-=|...
T Consensus 93 -------Ee~NI~wa~~Le~aGv~ViyG--~~--------------glKvHaK~~lI~R~e~~g~~~~~Y~hlgTGNyn~ 149 (188)
T d2o8ra3 93 -------EENNLRLSERMRRSGIRIVYS--MP--------------GLKVHAKTALILYHTPAGERPQGIALLSTGNFNE 149 (188)
T ss_dssp ----------CHHHHHHHHHHTCEEEEC--CT--------------TCCBCCCEEEEEECCCSSSCCCEEEEEESSCSSC
T ss_pred -------HHHHHHHhhhHHhcCeEEeeC--cc--------------chhhcceeeEEEEEEcCccccccEEEeCCCCcCc
Confidence 011225677899999999852 11 1356999988854422 22334478888655433
Q ss_pred CccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh-HHHHHHHHHH
Q 045478 394 GRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP-AAYDILINFE 451 (852)
Q Consensus 394 ~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp-aa~dl~~~F~ 451 (852)
. .. .-+-|+++.-.-| ...|+...|.
T Consensus 150 ~-------------------------------TA-r~YtD~~l~Ta~~~i~~Dv~~~F~ 176 (188)
T d2o8ra3 150 T-------------------------------TA-RIYSDTTLMTANTDIVHDVYRLFR 176 (188)
T ss_dssp C-------------------------------CS-SCEEEEEEEECCHHHHHHHHHHHH
T ss_pred c-------------------------------ch-hheeeeeeecCCHHHHHHHHHHHH
Confidence 0 11 2466888887776 6889999994
|
| >d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.059 Score=49.52 Aligned_cols=136 Identities=14% Similarity=0.215 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHhcc-----ceEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccc
Q 045478 240 QCWEEICHAVLEAR-----HLIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLF 314 (852)
Q Consensus 240 ~~~~~l~~aI~~Ak-----~~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~ 314 (852)
+.|+.+.+.|++|- .+|-|+-|.+.. ..+|.++|..||+.|-+|-++| .-...+.
T Consensus 34 ~sF~~vv~fl~eAA~DP~V~~Ik~TlYR~a~----------------~S~Ii~aLi~Aa~nGK~Vtv~v-ELkARFD--- 93 (187)
T d1xdpa3 34 HTFEHVLELLRQASFDPSVLAIKINIYRVAK----------------DSRIIDSMIHAAHNGKKVTVVV-ELQARFD--- 93 (187)
T ss_dssp BCTHHHHHHHHHHHHCTTEEEEEEEESSCCT----------------TCHHHHHHHHHHHTTCEEEEEE-CTTCSST---
T ss_pred hhhhHHHHHHHHHhcCCCccEEEEEEEEecC----------------CccHHHHHHHHHHcCCEEEEEE-echhccc---
Confidence 44777888888874 588888886532 3699999999999999999998 4321110
Q ss_pred ccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCC
Q 045478 315 IKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDG 394 (852)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~ 394 (852)
...+-++.+.|+.+||+|.+-- ++ +--|.|+++|--+..+ .-+..+++|--|...+
T Consensus 94 -------Ee~NI~wa~~Le~aGv~ViyG~--~g--------------lKvHaK~~lV~R~e~~-~~~~Y~higTGNyn~~ 149 (187)
T d1xdpa3 94 -------EEANIHWAKRLTEAGVHVIFSA--PG--------------LKIHAKLFLISRKENG-EVVRYAHIGTGNFNEK 149 (187)
T ss_dssp -------TTTTTTTTHHHHHHTCEEEECC--TT--------------CEECCEEEEEEEEETT-EEEEEEEEESSCSCTT
T ss_pred -------HHHHHHHHHHHHHCCCEEEcCc--cc--------------ceeeeEEEEEEEEcCC-cEEEEEEecCCCcCcc
Confidence 0001235667889999998531 21 3459999999654222 2233677776664430
Q ss_pred ccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeCh-HHHHHHHHHH
Q 045478 395 RYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGP-AAYDILINFE 451 (852)
Q Consensus 395 r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gp-aa~dl~~~F~ 451 (852)
.. .-+-|+++.-.-| ...|+...|.
T Consensus 150 -------------------------------TA-riYtD~~l~T~~~~i~~D~~~~F~ 175 (187)
T d1xdpa3 150 -------------------------------TA-RLYTDYSLLTADARITNEVRRVFN 175 (187)
T ss_dssp -------------------------------GG-GTEEEEEEEECCHHHHHHHHHHHH
T ss_pred -------------------------------ch-hheeeeeeecCCHHHHHHHHHHHH
Confidence 01 2456888887777 6889999984
|
| >d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Porphyromonas gingivalis [TaxId: 837]
Probab=91.78 E-value=0.14 Score=47.10 Aligned_cols=43 Identities=14% Similarity=0.229 Sum_probs=33.7
Q ss_pred EEEEeeEEEEc-----c----eeEEecCcCcccCCCCCCCCceeEEEEecCccc
Q 045478 700 IYVHAKGMIVD-----D----EYVIMGSANINQRSLEGSRDTEIAMGAYQPHYT 744 (852)
Q Consensus 700 iyvHSKlmIVD-----D----~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~ 744 (852)
.-+|||+++|- + +|+.||+-|+|...-..= +.+++..-|++.+
T Consensus 117 lKvHaK~~lI~R~e~~g~~~~~Y~hlgTGNyn~~TAr~Y--tD~~l~Ta~~~i~ 168 (188)
T d2o8ra3 117 LKVHAKTALILYHTPAGERPQGIALLSTGNFNETTARIY--SDTTLMTANTDIV 168 (188)
T ss_dssp CCBCCCEEEEEECCCSSSCCCEEEEEESSCSSCCCSSCE--EEEEEEECCHHHH
T ss_pred hhhcceeeEEEEEEcCccccccEEEeCCCCcCccchhhe--eeeeeecCCHHHH
Confidence 47999999882 1 489999999999988755 7788877666543
|
| >d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Escherichia coli [TaxId: 562]
Probab=91.26 E-value=0.19 Score=45.99 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=35.0
Q ss_pred EEEEeeEEEEcc-------eeEEecCcCcccCCCCCCCCceeEEEEecCccc
Q 045478 700 IYVHAKGMIVDD-------EYVIMGSANINQRSLEGSRDTEIAMGAYQPHYT 744 (852)
Q Consensus 700 iyvHSKlmIVDD-------~~~iIGSANln~RSm~~n~DsEi~v~i~d~~~~ 744 (852)
.-+|||+++|-. +|+.||+-|+|...-..= +.+++..-|++.+
T Consensus 118 lKvHaK~~lV~R~e~~~~~~Y~higTGNyn~~TAriY--tD~~l~T~~~~i~ 167 (187)
T d1xdpa3 118 LKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTARLY--TDYSLLTADARIT 167 (187)
T ss_dssp CEECCEEEEEEEEETTEEEEEEEEESSCSCTTGGGTE--EEEEEEECCHHHH
T ss_pred ceeeeEEEEEEEEcCCcEEEEEEecCCCcCccchhhe--eeeeeecCCHHHH
Confidence 589999999963 489999999999998755 7788887676544
|
| >d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Porphyromonas gingivalis [TaxId: 837]
Probab=86.23 E-value=2.1 Score=39.40 Aligned_cols=129 Identities=12% Similarity=0.116 Sum_probs=83.0
Q ss_pred hhhHHHHHHHHHhccc----eEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccc
Q 045478 239 GQCWEEICHAVLEARH----LIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLF 314 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~----~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~ 314 (852)
....+-+-+.|+.|+. .|.+-.=.+ .+..+.++|-+|++.||+|.++| .+..+.. ++
T Consensus 11 ~~l~~~I~~Ei~~a~~G~~~~I~~KmNsL-----------------~D~~iI~~Ly~AS~aGV~I~LiV-RGic~L~-pg 71 (186)
T d2o8ra4 11 EAITNLIEREIENVKRGKRGYMLLKMNGL-----------------QDKNVITQLYRASEAGVEIDLIV-RGICCLV-PD 71 (186)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEESCB-----------------CCHHHHHHHHHHHHTTCEEEEEE-SSCBCSC-CS
T ss_pred HHHHHHHHHHHHHHHCCCCcEEEEeeccc-----------------cCHHHHHHHHHHhcCCCeEEEEE-Cchheec-CC
Confidence 3455666677777764 565544332 13699999999999999999999 7765432 32
Q ss_pred ccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEe--cCCCCCCCCceEEEEcccCCC
Q 045478 315 IKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIV--DTPASGNNRKISAFIGGLDLC 392 (852)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVV--D~~~~~~~~~~vAfvGG~nl~ 392 (852)
.+ - ..+|+|+-- -+ + |-.|-++... +|+ ...|+|+.|+-
T Consensus 72 v~--------------g--senI~V~Si---vg---R----------fLEHsRiy~F~n~g~-------~~~yigSAD~M 112 (186)
T d2o8ra4 72 MP--------------Q--SRNIRVTRL---VD---M----------YLEHSRIWCFHNGGK-------EEVFISSADWM 112 (186)
T ss_dssp SG--------------G--GTTEEEEEC---CS---S----------SEECCCEEEECGGGS-------CEEEEESCCBC
T ss_pred CC--------------C--CCcEEEEEe---ec---c----------ccccceEEEEEcCCc-------eEEEEeccchh
Confidence 21 0 235666521 01 1 2347888887 333 27899999988
Q ss_pred CCccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHH-HHHHHHHHHHHhhh
Q 045478 393 DGRYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAA-YDILINFEQRWRRS 457 (852)
Q Consensus 393 ~~r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa-~dl~~~F~~rW~~~ 457 (852)
..-.|- --.+.+-|+-|.. ..|...|...|...
T Consensus 113 ~RNLdr--------------------------------RVEv~~PI~d~~~k~~l~~iL~~~l~Dn 146 (186)
T d2o8ra4 113 KRNLYN--------------------------------RIETACPVLDPTLRREIIDILEIQLRDN 146 (186)
T ss_dssp HHHHHT--------------------------------SBCEEEECCSHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhc--------------------------------ceeEEEEeCCHHHHHHHHHHHHHHcccc
Confidence 722211 1267888888864 55778888888763
|
| >d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Escherichia coli [TaxId: 562]
Probab=82.16 E-value=3.7 Score=37.66 Aligned_cols=132 Identities=14% Similarity=0.186 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHHhccc----eEEEEEeecccceeEecCCCCCCCCCCcchHHHHHHHhhhcCCeEEEEEeCCCccccccc
Q 045478 239 GQCWEEICHAVLEARH----LIYIIGWSVFHPVKLVREPTKPLPSFGELSFGELLKHKSQEGVRVLLLIWDDKTSHDNLF 314 (852)
Q Consensus 239 ~~~~~~l~~aI~~Ak~----~I~I~~w~~~~~~~l~r~~~~~~~~~~~~~l~~~L~~~a~~GV~VriLvwD~~~s~~~~~ 314 (852)
....+-+-+.|+.|+. .|.+-.=.+ .+..+.++|-+|++.||+|.++| .+..+.. ++
T Consensus 11 ~~l~~~I~~Ei~~a~~G~~a~I~~K~NsL-----------------~D~~~I~~Ly~AS~aGV~I~LiV-RGiC~L~-pg 71 (187)
T d1xdpa4 11 RLLYEMVDREIANAQQGLPSGITLKLNNL-----------------VDKGLVDRLYAASSSGVPVNLLV-RGMCSLI-PN 71 (187)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEESCB-----------------CCHHHHHHHHHHHHTTCCEEEEE-SSCBCBC-TT
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEeccC-----------------cCHHHHHHHHHHHcCCCeEEEEE-cccceec-cc
Confidence 3455566667777764 465543221 23699999999999999999999 7664432 32
Q ss_pred ccccccccCCcHHHHhhhcCCCCEEEecCCCCCCcchhhhhccccccccCccceEEecCCCCCCCCceEEEEcccCCCCC
Q 045478 315 IKTEGVMQTHDEETRKFFKHSSVNCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVIVDTPASGNNRKISAFIGGLDLCDG 394 (852)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vAfvGG~nl~~~ 394 (852)
.. |+ ..+|+|+-- -+ + |--|..+...-.. | ....|+|+.|+-..
T Consensus 72 i~--g~-------------SenI~V~Si---vg---R----------fLEHsRi~~F~n~--g---~~~~yi~SADwM~R 115 (187)
T d1xdpa4 72 LE--GI-------------SDNIRAISI---VD---R----------YLEHDRVYIFENG--G---DKKVYLSSADWMTR 115 (187)
T ss_dssp CT--TT-------------STTEEEEEE---CS---S----------SEECCCEEEECGG--G---SCEEEEESCCBSHH
T ss_pred cC--CC-------------cCcEEEEEe---cc---c----------hhccCcEEEEecC--C---CcceeecCcchhhH
Confidence 21 11 335666521 00 1 2347777777211 0 12899999998772
Q ss_pred ccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCceeeceeeeeChHH-HHHHHHHHHHHhhh
Q 045478 395 RYDTPEHRLFGDLNTVFANDFHNPSLPSHAKGPREPWHDMHCKVEGPAA-YDILINFEQRWRRS 457 (852)
Q Consensus 395 r~Dt~~H~~~~~~~~~~~~d~~n~~~~~~~~~~~~pWhDv~~~v~Gpaa-~dl~~~F~~rW~~~ 457 (852)
-.| .--.+.+-|+.|.+ ..|...|...|...
T Consensus 116 NL~--------------------------------rRVEv~~PI~d~~~k~~i~~il~~~L~Dn 147 (187)
T d1xdpa4 116 NID--------------------------------YRIEVATPLLDPRLKQRVLDIIDILFSDT 147 (187)
T ss_dssp HHH--------------------------------SEEEEEEECCSHHHHHHHHHHHHHHHTCC
T ss_pred HHh--------------------------------hhhheeeEeCCHHHHHHHHHHHHHHhhhh
Confidence 221 12378888899865 45777888888753
|
| >d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Escherichia coli [TaxId: 562]
Probab=80.38 E-value=0.18 Score=46.93 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=35.4
Q ss_pred EEeeEEEE---cceeEEecCcCcccCCCCCCCCceeEEEEecCc
Q 045478 702 VHAKGMIV---DDEYVIMGSANINQRSLEGSRDTEIAMGAYQPH 742 (852)
Q Consensus 702 vHSKlmIV---DD~~~iIGSANln~RSm~~n~DsEi~v~i~d~~ 742 (852)
=||.++.+ ++..++||||+|-.|+|. +=-|+++=|+||.
T Consensus 90 EHsRi~~F~n~g~~~~yi~SADwM~RNL~--rRVEv~~PI~d~~ 131 (187)
T d1xdpa4 90 EHDRVYIFENGGDKKVYLSSADWMTRNID--YRIEVATPLLDPR 131 (187)
T ss_dssp ECCCEEEECGGGSCEEEEESCCBSHHHHH--SEEEEEEECCSHH
T ss_pred ccCcEEEEecCCCcceeecCcchhhHHHh--hhhheeeEeCCHH
Confidence 49999999 889999999999999998 4499999999983
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