Citrus Sinensis ID: 045512
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 782 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DN14 | 999 | Multiple C2 and transmemb | no | no | 0.498 | 0.390 | 0.230 | 9e-18 | |
| Q5RJH2 | 878 | Multiple C2 and transmemb | no | no | 0.466 | 0.415 | 0.237 | 5e-15 | |
| Q6DN12 | 878 | Multiple C2 and transmemb | no | no | 0.465 | 0.414 | 0.234 | 1e-14 | |
| Q9ZVT9 | 1020 | C2 and GRAM domain-contai | no | no | 0.150 | 0.115 | 0.414 | 6e-13 | |
| Q5DTI8 | 891 | Extended synaptotagmin-3 | no | no | 0.274 | 0.241 | 0.271 | 2e-10 | |
| Q3U7R1 | 1092 | Extended synaptotagmin-1 | no | no | 0.439 | 0.315 | 0.243 | 5e-10 | |
| Q5R4J5 | 419 | Synaptotagmin-1 OS=Pongo | no | no | 0.300 | 0.560 | 0.262 | 6e-10 | |
| C9J798 | 803 | Putative Ras GTPase-activ | no | no | 0.278 | 0.271 | 0.260 | 1e-09 | |
| O43374 | 803 | Ras GTPase-activating pro | no | no | 0.278 | 0.271 | 0.260 | 1e-09 | |
| Q9Y6V0 | 5065 | Protein piccolo OS=Homo s | no | no | 0.150 | 0.023 | 0.352 | 1e-09 |
| >sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 114/494 (23%), Positives = 201/494 (40%), Gaps = 104/494 (21%)
Query: 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI-AKHLEKNQNPVWNQIFAFSKER 97
M+ L + + + ++L D G+ DPYV+ K+G + +K + KN NPVW + +
Sbjct: 260 MYQLDITLRRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACILVDH 319
Query: 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQG 156
L+ L + V D D G +DDF+G DL ++ P D L L+D G
Sbjct: 320 LREPLY-IKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLT-----LKDPHYPDHDLG 373
Query: 157 EIMLAVWIGTQADES------FSEAWHSDAHNISQTNLANTISKVYFSPKLYYLR----- 205
I+L+V + + ES ++W + +S+ N + YFS K + R
Sbjct: 374 IILLSVILTPKEGESRDVTMLMRKSWKRSSKELSE----NEVVGSYFSVKSLFWRTCGRP 429
Query: 206 --------------------------------------------VFVFEAQDLVPSEEGR 221
+ + E +DL +
Sbjct: 430 ALPVLGFCRAELQNPYCKNVQFQTQSLRLSDLHRKSHLWRGIVSITLIEGRDLKAMDSNG 489
Query: 222 APDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEI 281
D YVK +LG+ + +++NP W E+ F E +I +T D+ +D+
Sbjct: 490 LSDPYVKFRLGH-QKYKSKIMPKTLNPQWREQFDFHLYEERGGVIDITAWDKDAGKRDDF 548
Query: 282 LGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGY 341
+GR + + + R +T HK L EEG + +L+ A
Sbjct: 549 IGRCQVDLSAL-SREQT-----------HKLELQLEEG------EGHLVLLVTLTASATV 590
Query: 342 HVLDESTHFSSDLQPSSMSLRKGS----------IGILELGILSAKNLMPMTSKDGKLTD 391
+ D S + D + L++ S +G L++ ++ A+ LM GK +D
Sbjct: 591 SISDLSVNSLEDQKEREEILKRYSPLRIFHNLKDVGFLQVKVIRAEGLM-AADVTGK-SD 648
Query: 392 AYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQ 451
+CV + N + T T+ L+P WN+ +T+ + D +V+ + V+D +D + D
Sbjct: 649 PFCVVELNNDRLLTHTVYKNLNPEWNKVFTFNIKDIHSVLEVTVYDE-----DRDRSAD- 702
Query: 452 RIGKVRIRLSTLET 465
+GKV I L +++
Sbjct: 703 FLGKVAIPLLSIQN 716
|
Homo sapiens (taxid: 9606) |
| >sp|Q5RJH2|MCTP2_MOUSE Multiple C2 and transmembrane domain-containing protein 2 OS=Mus musculus GN=Mctp2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 99/417 (23%), Positives = 181/417 (43%), Gaps = 52/417 (12%)
Query: 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKL-GNYKGIAKHLEKNQNPVWNQIFAFSKERL 98
+ L +++ + RNL V D G+ DPYV+ KL G +K + KN NP+W++I + L
Sbjct: 194 YLLTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYKSKVIYKNLNPIWDEIVVLPIQSL 253
Query: 99 QSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEI 158
L V V D+D+ K DF+G L ++ + L +LED + G I
Sbjct: 254 DQKL-RVKVYDRDLTKSDFMGSAFVVLRDLELNRTTEHIL-----KLEDPNSLEDDMGVI 307
Query: 159 MLAVWIGTQADESFSEAWHSDAHNISQTNLANTISKVYFSPKLY-------YLRVFVFEA 211
+L + + + + W S+ +S + ++ I + S L + + + E
Sbjct: 308 VLNLNLVVKQGDFKRHRW-SNRKRLSASK-SSLIRNLRLSESLRKNQLWNGIISITLLEG 365
Query: 212 QDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVE 271
+++ G + +V+++LG R + +S NP W E+ F ++ + V
Sbjct: 366 KNV---SGGNMTEMFVQLKLGE-QRYKSKTLCKSANPQWQEQFDFHYFSDRMGILDIEVW 421
Query: 272 DRIGPGKDEILGREFIPVRNVPQRHETT-KLPDPRWFNLHKPSLSAEEGAEKKKEKFSSK 330
+ +E LG + + +P + + +LP L + +GA
Sbjct: 422 GKDSKKHEERLGTCKVDISALPLKQDNCLELP-----------LESCQGA--------LL 462
Query: 331 ILIRFCLEAGYHVLDESTH-FSSDLQPSSMSLRKG---------SIGILELGILSAKNLM 380
+LI G + D F + +S R +GIL++ +L A +L+
Sbjct: 463 MLITLTPCTGVSISDLCVCPFEDPSERQQISQRYAFQNSLKDVKDVGILQVKVLKASDLL 522
Query: 381 PMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFD 437
GK +D +C+ + GN ++T TI L+P WN+ +T+ + D V+ + VFD
Sbjct: 523 A-ADFSGK-SDPFCLLELGNDRLQTHTIYKNLNPEWNKVFTFPIKDIHDVLEVTVFD 577
|
Mus musculus (taxid: 10090) |
| >sp|Q6DN12|MCTP2_HUMAN Multiple C2 and transmembrane domain-containing protein 2 OS=Homo sapiens GN=MCTP2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 98/418 (23%), Positives = 180/418 (43%), Gaps = 54/418 (12%)
Query: 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKE 96
+ L +++ + RNL V D G+ DPYV+ KL YK +K + KN NPVW++I +
Sbjct: 194 YLLTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYK--SKVIYKNLNPVWDEIVVLPIQ 251
Query: 97 RLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQG 156
L L V V D+D+ DF+G L ++ + L +LED + G
Sbjct: 252 SLDQKL-RVKVYDRDLTTSDFMGSAFVILSDLELNRTTEHIL-----KLEDPNSLEDDMG 305
Query: 157 EIMLAVWIGTQADESFSEAWHSDAHNISQTNLANTISKVYFSPKLY-------YLRVFVF 209
I+L + + + + W S+ +S + ++ I + S L + + +
Sbjct: 306 VIVLNLNLVVKQGDFKRHRW-SNRKRLSASK-SSLIRNLRLSESLKKNQLWNGIISITLL 363
Query: 210 EAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVT 269
E +++ G + +V+++LG+ R + +S NP W E+ F ++ +
Sbjct: 364 EGKNV---SGGSMTEMFVQLKLGD-QRYKSKTLCKSANPQWQEQFDFHYFSDRMGILDIE 419
Query: 270 VEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSS 329
V + +E LG + + +P + N + L + GA
Sbjct: 420 VWGKDNKKHEERLGTCKVDISALPLKQA----------NCLELPLDSCLGA--------L 461
Query: 330 KILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRK----------GSIGILELGILSAKNL 379
+L+ AG V D +DL ++ +GIL++ +L A +L
Sbjct: 462 LMLVTLTPCAGVSVSDLCVCPLADLSERKQITQRYCLQNSLKDVKDVGILQVKVLKAADL 521
Query: 380 MPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFD 437
+ GK +D +C+ + GN ++T T+ L+P WN+ +T+ + D V+ + VFD
Sbjct: 522 LA-ADFSGK-SDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFD 577
|
Homo sapiens (taxid: 9606) |
| >sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSN 101
L V VV+ARNLP MD++G DPYV ++LG + K ++KN NP W + F+F + L
Sbjct: 3 LQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDDLNDE 62
Query: 102 LVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE-DRKGDKITQGEIM 159
LV V+V D+D DDFVG+V + V + L WY L +KG K GEI+
Sbjct: 63 LV-VSVLDEDKYFNDDFVGQVRVSVSLVFD--AENQSLGTVWYPLNPKKKGSKKDCGEIL 119
Query: 160 LAV 162
L +
Sbjct: 120 LKI 122
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 112/243 (46%), Gaps = 28/243 (11%)
Query: 44 VNVVKARNLPVMD----VSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQ 99
V++++A+ L D + G DPY +V +G ++ + KN NP WN++F F +
Sbjct: 314 VHLLEAKKLAQKDNFLGLGGKSDPYAKVSIGLQHCRSRTIYKNLNPTWNEVFEFMVYEVP 373
Query: 100 SNLVEVTVKDKDIGKDDFVGRVTFDLFEV-PHRVPPDSPLAPQWYRLEDRKGDKITQGEI 158
+EV + D+D KDDF+G + L +V +RV +W+ L D T G +
Sbjct: 374 GQDLEVDLYDEDTDKDDFLGSLQICLGDVMKNRV------VDEWFALND-----TTSGRL 422
Query: 159 MLAV-WIGTQADESFSEAWHSDAHNISQTNLANTISKVYFSPK--LYYLRVFVFEAQDL- 214
L + W+ D+ EA + +S L + P+ YL + A+ L
Sbjct: 423 HLRLEWLSLLTDQ---EALTENDSGLSTAILVVFLENACNLPRNPFDYLN-GEYRAKKLS 478
Query: 215 --VPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEE-HMFVASEPFEDLIIVTVE 271
V ++ R P +YVK+ +G T + S +PVW++ FV S E L + ++
Sbjct: 479 RFVKNKASRDPSSYVKLTVGKKT-FTSKTCPHSKDPVWSQVFSFFVHSVAAEQLCLKVLD 537
Query: 272 DRI 274
D +
Sbjct: 538 DEL 540
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|Q3U7R1|ESYT1_MOUSE Extended synaptotagmin-1 OS=Mus musculus GN=Esyt1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 98/402 (24%), Positives = 170/402 (42%), Gaps = 58/402 (14%)
Query: 44 VNVVKARNLPVMD------VSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKER 97
++++ AR L D + G DPY V++G ++ +++ NP W + +
Sbjct: 323 IHLLAARGLSSKDKYVKGLIEGKSDPYALVRVGTQTFCSRVIDEELNPHWGETYEVIVHE 382
Query: 98 LQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGE 157
+ +EV V DKD KDDF+GR+ D+ +V + + WY L+ QG+
Sbjct: 383 VPGQEIEVEVFDKDPDKDDFLGRMKLDVGKVLQ-----AGVLDNWYPLQG------GQGQ 431
Query: 158 IMLAV-WIGTQADESFSEAWHSDAHNISQTNLAN-TISKVYFSPKLYYLRVFVFEAQDLV 215
+ L + W+ + DA + Q N I+ P L V++ AQDL
Sbjct: 432 VHLRLEWL----------SLLPDAEKLDQVLQWNRGITSRPEPPSAAILVVYLDRAQDLP 481
Query: 216 PSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIG 275
+ + P+ V++ + ++ R ++ ++ + +PVW E F +P + V V+D
Sbjct: 482 LKKGNKEPNPMVQLSVQDVTRESKATYSTN-SPVWEEAFRFFLQDPRSQELDVQVKDD-- 538
Query: 276 PGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKIL--- 332
+ LG +P+ + E T +WF LS+ + K +IL
Sbjct: 539 -SRALTLGALTLPLARLLTASELTL---DQWFQ-----LSSSGPNSRLYMKLVMRILYLD 589
Query: 333 ---IRFCLEAGYHVLDE---STHFSSDLQP----SSMSLRKGSIGILELGILSAKNLMPM 382
IRF G D T S D P ++ + G+ +L + +L A++L+
Sbjct: 590 YSEIRFPTVPGAQDWDRESLETGSSVDAPPRPYHTTPNSHFGTENVLRIHVLEAQDLIAK 649
Query: 383 TSKDGKL----TDAYCVAKYGNKWIRTRTILDTLDPRWNEQY 420
G L +D Y K K RT + + L+PRWNE +
Sbjct: 650 DRFLGGLVKGKSDPYVKLKVAGKSFRTHVVREDLNPRWNEVF 691
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|Q5R4J5|SYT1_PONAB Synaptotagmin-1 OS=Pongo abelii GN=SYT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 116/290 (40%), Gaps = 55/290 (18%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGIAKHLEKNQNPVWN 88
S D Q + L V +++A LP +D+ G+ DPYV+V L K K K NPV+N
Sbjct: 146 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 205
Query: 89 QIFAFS--KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145
+ F F L + + V D D K D +G F+VP + +W L
Sbjct: 206 EQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGE-----FKVPMNTVDFGHVTEEWRDL 260
Query: 146 EDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDAHNISQTNLANTISKVYFSPKLYYLR 205
+ A Q L + + + P L
Sbjct: 261 Q--------------------------------SAEKEEQEKLGDICFSLRYVPTAGKLT 288
Query: 206 VFVFEAQDLVPSEEGRAPDAYVKIQL-GNLVRVTRPSHV---RSVNPVWNEEHMFVASEP 261
V + EA++L + G D YVKI L N R+ + ++NP +NE F P
Sbjct: 289 VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKETTIKKNTLNPYYNESFSFEV--P 346
Query: 262 FEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQ--RHETTKLPDPR 305
FE + ++VTV D GK++ +G+ F+ + RH + L +PR
Sbjct: 347 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPR 396
|
May have a regulatory role in the membrane interactions during trafficking of synaptic vesicles at the active zone of the synapse. It binds acidic phospholipids with a specificity that requires the presence of both an acidic head group and a diacyl backbone. A Ca(2+)-dependent interaction between synaptotagmin and putative receptors for activated protein kinase C has also been reported. It can bind to at least three additional proteins in a Ca(2+)-independent manner; these are neurexins, syntaxin and AP2. Pongo abelii (taxid: 9601) |
| >sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2 | Back alignment and function description |
|---|
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 107/280 (38%), Gaps = 62/280 (22%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSN 101
L++ +V+ +NLP D++GS DPY VK+ N I VW + F E Q +
Sbjct: 7 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEPII------RTATVWKTLCPFWGEEYQVH 60
Query: 102 L------VEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKIT 154
L V V D+D + +DD +G+V + S W L + D+
Sbjct: 61 LPPTFHAVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKGFS----GWAHLTEVDPDEEV 116
Query: 155 QGEI--MLAVWIGTQADESFSEAWHSDAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQ 212
QGEI L VW G +A LR V EA+
Sbjct: 117 QGEIHLRLEVWPGARA---------------------------------CRLRCSVLEAR 143
Query: 213 DLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVED 272
DL P + D +V+++ R T +S P WNE F E + + V D
Sbjct: 144 DLAPKDRNGTSDPFVRVRYKGRTRETSIVK-KSCYPRWNETFEFELQEGAMEALCVEAWD 202
Query: 273 RIGPGKDEILGREFIPVR--NVPQRHETTKLPDPRWFNLH 310
+++ LG+ I V+ V Q+ E WF L
Sbjct: 203 WDLVSRNDFLGKVVIDVQRLRVVQQEEG-------WFRLQ 235
|
Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway. Homo sapiens (taxid: 9606) |
| >sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sapiens GN=RASA4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 107/280 (38%), Gaps = 62/280 (22%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSN 101
L++ +V+ +NLP D++GS DPY VK+ N I VW + F E Q +
Sbjct: 7 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEPII------RTATVWKTLCPFWGEEYQVH 60
Query: 102 L------VEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKIT 154
L V V D+D + +DD +G+V + S W L + D+
Sbjct: 61 LPPTFHAVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKGFS----GWAHLTEVDPDEEV 116
Query: 155 QGEI--MLAVWIGTQADESFSEAWHSDAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQ 212
QGEI L VW G +A LR V EA+
Sbjct: 117 QGEIHLRLEVWPGARA---------------------------------CRLRCSVLEAR 143
Query: 213 DLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVED 272
DL P + D +V+++ R T +S P WNE F E + + V D
Sbjct: 144 DLAPKDRNGTSDPFVRVRYKGRTRETSIVK-KSCYPRWNETFEFELQEGAMEALCVEAWD 202
Query: 273 RIGPGKDEILGREFIPVR--NVPQRHETTKLPDPRWFNLH 310
+++ LG+ I V+ V Q+ E WF L
Sbjct: 203 WDLVSRNDFLGKVVIDVQRLRVVQQEEG-------WFRLQ 235
|
Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Homo sapiens (taxid: 9606) |
| >sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=1 SV=4 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 22 RYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIA 76
+ G K +YDL L +++++ARNL D +G DP+V+V L YK
Sbjct: 4564 KKHGSSKLQINYDL----GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGAEYKRRT 4619
Query: 77 KHLEKNQNPVWNQIF---AFSKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRV 132
KH++K+ NP WNQ + S E+L+ +EVTV D D +DF+G V DL H
Sbjct: 4620 KHVQKSLNPEWNQTVIYKSISMEQLKKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL- 4678
Query: 133 PPDSPLAPQWYRLEDR 148
D+ P+WY L+++
Sbjct: 4679 --DN--TPRWYPLKEQ 4690
|
May act as a scaffolding protein involved in the organization of synaptic active zones and in synaptic vesicle trafficking. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 782 | ||||||
| 356523572 | 1004 | PREDICTED: multiple C2 and transmembrane | 0.984 | 0.766 | 0.784 | 0.0 | |
| 356542988 | 1010 | PREDICTED: multiple C2 and transmembrane | 0.984 | 0.762 | 0.782 | 0.0 | |
| 225460741 | 1005 | PREDICTED: multiple C2 and transmembrane | 0.985 | 0.767 | 0.760 | 0.0 | |
| 225460739 | 1002 | PREDICTED: multiple C2 and transmembrane | 0.985 | 0.769 | 0.760 | 0.0 | |
| 255561614 | 1032 | synaptotagmin, putative [Ricinus communi | 0.978 | 0.741 | 0.790 | 0.0 | |
| 297845280 | 1025 | C2 domain-containing protein [Arabidopsi | 0.984 | 0.751 | 0.755 | 0.0 | |
| 15219915 | 1029 | C2 domain-containing protein [Arabidopsi | 0.983 | 0.747 | 0.756 | 0.0 | |
| 3287696 | 783 | Strong similarity to phosphoribosylanthr | 0.983 | 0.982 | 0.756 | 0.0 | |
| 224135999 | 774 | predicted protein [Populus trichocarpa] | 0.983 | 0.993 | 0.768 | 0.0 | |
| 296081134 | 963 | unnamed protein product [Vitis vinifera] | 0.966 | 0.785 | 0.760 | 0.0 |
| >gi|356523572|ref|XP_003530411.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1264 bits (3272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/788 (78%), Positives = 693/788 (87%), Gaps = 18/788 (2%)
Query: 1 MPKTNPEFLLVETSPPLAARLRYRGG-DKTASSYDLVEQMHYLFVNVVKARNLPVMDVSG 59
+PK NPE+ LVETSPPLAARLRYRGG DK +++YDLVEQM+YL+VNVVKAR+LPV D++G
Sbjct: 229 IPKQNPEYSLVETSPPLAARLRYRGGRDKISTTYDLVEQMNYLYVNVVKARDLPVKDITG 288
Query: 60 SLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVG 119
SLDPYVEVKLGNYKG+ KHL+KNQNPVWNQIFAFSK+RLQSNL+EVTVKDKDI KDDFVG
Sbjct: 289 SLDPYVEVKLGNYKGLTKHLDKNQNPVWNQIFAFSKDRLQSNLLEVTVKDKDIVKDDFVG 348
Query: 120 RVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKI-TQGEIMLAVWIGTQADESFSEAWHS 178
RV FDL EVP RVPPDSPLAPQWY LED+KG KI GEIMLAVW+GTQADESF EAWHS
Sbjct: 349 RVMFDLTEVPLRVPPDSPLAPQWYILEDKKGQKIHNNGEIMLAVWMGTQADESFPEAWHS 408
Query: 179 DAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVT 238
DAHNIS +NLANT SKVYFSPKLYYLRV V EAQDLVPS++GRAPDA V++QLGN +R T
Sbjct: 409 DAHNISHSNLANTRSKVYFSPKLYYLRVQVIEAQDLVPSDKGRAPDAIVRVQLGNQMRFT 468
Query: 239 RPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHET 298
RPS +R +NPVWN+E MFVA+EPFED IIVTVED++G EILGRE I VR+VP RHE+
Sbjct: 469 RPSQIRGINPVWNDELMFVAAEPFEDFIIVTVEDKVG-SSVEILGREIISVRSVPPRHES 527
Query: 299 TK-LPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQPS 357
+K LPD RWFNLH+PS EE EKKK+KFSSKI +R CLEAGYHVLDESTHFSSDLQPS
Sbjct: 528 SKKLPDSRWFNLHRPSAVGEEETEKKKDKFSSKIHLRVCLEAGYHVLDESTHFSSDLQPS 587
Query: 358 SMSLRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWN 417
S LRK +IGILELGILSA+NL+PM +++G+ TDAYCVAKYGNKW+RTRT+LDTL PRWN
Sbjct: 588 SKHLRKKNIGILELGILSARNLLPMKAREGRTTDAYCVAKYGNKWVRTRTLLDTLSPRWN 647
Query: 418 EQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477
EQYTWEV+DPCTVIT+GVFDN H+NGS DA DQRIGKVRIRLSTLETDR+YTH+YPLLV
Sbjct: 648 EQYTWEVHDPCTVITVGVFDNHHINGSS-DARDQRIGKVRIRLSTLETDRVYTHFYPLLV 706
Query: 478 LTPSGLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQIV 537
L P+GLKKNGELHLA+RFTCTAWV+MV +YG PLLPKMHYVQPIPV ID LRHQAMQIV
Sbjct: 707 LQPNGLKKNGELHLAVRFTCTAWVNMVAQYGRPLLPKMHYVQPIPVRHIDWLRHQAMQIV 766
Query: 538 AARLGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELF---SAICRWFNDICTWR 594
AARL RAEPPLRRE VEYMLDVDYHMWSLR+SKANF RIM L +A+C+WF+DICTWR
Sbjct: 767 AARLSRAEPPLRREAVEYMLDVDYHMWSLRRSKANFHRIMSLLKGVTAVCKWFDDICTWR 826
Query: 595 NPVETVLLHVLFLILVFYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAHL 654
NP+ T L+HVLFLILV YPELILPTIFLYLF+IG+WNYRFRPR+PP +DA+LSQA AH
Sbjct: 827 NPITTCLVHVLFLILVCYPELILPTIFLYLFVIGIWNYRFRPRNPPHMDARLSQAETAH- 885
Query: 655 DELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQAI 714
DELDEEFD+FPT++PSD VRMRY+RLRSV G++QTVVGDLA+Q ER QAI
Sbjct: 886 ---------PDELDEEFDTFPTTKPSDIVRMRYDRLRSVAGRVQTVVGDLATQGERAQAI 936
Query: 715 LCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSF 774
L WRD RAT IF+IFS IWAVF Y+TPFQVVA+LIGL+MLRHPRFRSKMPSVPVNFFK
Sbjct: 937 LGWRDSRATSIFIIFSLIWAVFIYITPFQVVAILIGLFMLRHPRFRSKMPSVPVNFFKRL 996
Query: 775 PSKSDMLI 782
PSKSDMLI
Sbjct: 997 PSKSDMLI 1004
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356542988|ref|XP_003539945.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1262 bits (3265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/790 (78%), Positives = 694/790 (87%), Gaps = 20/790 (2%)
Query: 1 MPKTNPEFLLVETSPPLAARLRYRGG---DKTASSYDLVEQMHYLFVNVVKARNLPVMDV 57
+P+ NPE+ LVETSPPLAARLRYRGG DK +++YDLVEQM+YL+VNVVKAR+LPVMD+
Sbjct: 233 IPRQNPEYSLVETSPPLAARLRYRGGGGGDKISTTYDLVEQMNYLYVNVVKARDLPVMDI 292
Query: 58 SGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDF 117
+GSLDPYVEVKLGNYKG+ KHL+KNQNPVW QIFAFSK+RLQSNL+EVTVKDKDIGKDDF
Sbjct: 293 TGSLDPYVEVKLGNYKGLTKHLDKNQNPVWKQIFAFSKDRLQSNLLEVTVKDKDIGKDDF 352
Query: 118 VGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKI-TQGEIMLAVWIGTQADESFSEAW 176
VGRV FDL EVP RVPPDSPLAPQWYRLED+KG KI GEIMLAVW+GTQADESF EAW
Sbjct: 353 VGRVMFDLTEVPLRVPPDSPLAPQWYRLEDKKGQKIHNNGEIMLAVWMGTQADESFPEAW 412
Query: 177 HSDAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVR 236
HSDAHN+S +NL+NT SKVYFSPKLYYLRV V EAQDLVPSE+GR PD+ V++QLGN +R
Sbjct: 413 HSDAHNVSHSNLSNTRSKVYFSPKLYYLRVQVIEAQDLVPSEKGRPPDSLVRVQLGNQMR 472
Query: 237 VTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRH 296
TRPS +R NPVWN+E MFVA+EPFED IIVTVED++GP EILGRE I VR+V RH
Sbjct: 473 FTRPSQIRGTNPVWNDELMFVAAEPFEDFIIVTVEDKVGPNV-EILGREIISVRSVLPRH 531
Query: 297 ETTK-LPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQ 355
E++K LPD RWFNLH+P+ EE +KKKEKFSSKI +R CLEAGYHVLDESTHFSSDLQ
Sbjct: 532 ESSKKLPDSRWFNLHRPNAVGEEETQKKKEKFSSKIHLRVCLEAGYHVLDESTHFSSDLQ 591
Query: 356 PSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPR 415
PSS LRK +IGILELGILSA+NL+PM +++G+ TDAYCVAKYGNKW+RTRT+LDTL PR
Sbjct: 592 PSSKHLRKKNIGILELGILSARNLLPMKAREGRTTDAYCVAKYGNKWVRTRTLLDTLSPR 651
Query: 416 WNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475
WNEQYTWEV+DPCTVIT+GVFDN H+NGS DA DQRIGKVRIRLSTLETDR+YTH+YPL
Sbjct: 652 WNEQYTWEVHDPCTVITVGVFDNHHINGSS-DARDQRIGKVRIRLSTLETDRVYTHFYPL 710
Query: 476 LVLTPSGLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQ 535
LVL P+GLKKNGELHLA+RFTCTAWV+MV +YG PLLPKMHYVQPIPV ID LRHQAMQ
Sbjct: 711 LVLQPNGLKKNGELHLAVRFTCTAWVNMVAQYGRPLLPKMHYVQPIPVRHIDWLRHQAMQ 770
Query: 536 IVAARLGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELF---SAICRWFNDICT 592
IVAARL RAEPPLRRE VEYMLDVDYHMWSLR+SKANFQRIM L +AIC+WF+DICT
Sbjct: 771 IVAARLSRAEPPLRREAVEYMLDVDYHMWSLRRSKANFQRIMSLLKGVTAICKWFDDICT 830
Query: 593 WRNPVETVLLHVLFLILVFYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINA 652
WRNP+ T L+HVLFLILV YPELILPTIFLYLF+IG+WNYRFRPRHPP +DA+LSQA A
Sbjct: 831 WRNPITTCLVHVLFLILVCYPELILPTIFLYLFVIGIWNYRFRPRHPPHMDARLSQAEAA 890
Query: 653 HLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQ 712
H DELDEEFD+FPT++PSD VRMRY+RLRSV G++QTVVGDLA+Q ER Q
Sbjct: 891 H----------PDELDEEFDTFPTTKPSDIVRMRYDRLRSVAGRVQTVVGDLATQGERAQ 940
Query: 713 AILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFK 772
AIL WRD RAT IF+IFS IWAVF Y+TPFQVVA+L+GLYMLRHPRFRSKMPSVPVNFFK
Sbjct: 941 AILGWRDSRATSIFIIFSLIWAVFIYITPFQVVAILVGLYMLRHPRFRSKMPSVPVNFFK 1000
Query: 773 SFPSKSDMLI 782
PSKSDMLI
Sbjct: 1001 RLPSKSDMLI 1010
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460741|ref|XP_002273028.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1258 bits (3254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/786 (76%), Positives = 682/786 (86%), Gaps = 15/786 (1%)
Query: 1 MPKTNPEFLLVETSPPLAARLRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGS 60
+P+ NPEF LVET PP+AAR+ YRG +KTAS+YDLVEQMHYL+V VVKAR+LPVMD++GS
Sbjct: 231 IPRQNPEFGLVETRPPVAARMGYRGANKTASTYDLVEQMHYLYVTVVKARDLPVMDITGS 290
Query: 61 LDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGR 120
LDPYVEVKLGNYKG KHLEKNQNPVWNQIFAFSKERLQSNL+E+ VKDKDIGKDDFVGR
Sbjct: 291 LDPYVEVKLGNYKGTTKHLEKNQNPVWNQIFAFSKERLQSNLIEIIVKDKDIGKDDFVGR 350
Query: 121 VTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDA 180
VTF+L +VP RVPPDSPLAPQWY+LEDR+G K T GE+MLAVW+GTQADE + +AWHSDA
Sbjct: 351 VTFELSDVPVRVPPDSPLAPQWYKLEDRRGVK-TGGEVMLAVWMGTQADECYPDAWHSDA 409
Query: 181 HNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRP 240
H+IS NLA T SKVYFSPKLYYLRV + EAQDLVP E+GR A VKIQLGN VR T+P
Sbjct: 410 HSISHENLAYTRSKVYFSPKLYYLRVHIIEAQDLVPWEKGRVVQASVKIQLGNQVRATKP 469
Query: 241 SHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTK 300
RS++ WNEE MFVASEPFED II++VEDR+GPGKDEILGR IP+R+VP R ++TK
Sbjct: 470 FQARSLSAGWNEEFMFVASEPFEDFIIISVEDRVGPGKDEILGRLVIPIRDVPPRIDSTK 529
Query: 301 LPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMS 360
LPD RWFNLHKP E +KK+ KFSSKI +R CLEAGYHVLDESTHFSSDLQPSS
Sbjct: 530 LPDARWFNLHKPYFGEGESEKKKEIKFSSKIYLRLCLEAGYHVLDESTHFSSDLQPSSKL 589
Query: 361 LRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQY 420
LR+ IGILE+GILSA+NL+PM SK G+ TDAYCVAKYGNKW+RTRT+LDTL PRWNEQY
Sbjct: 590 LRRPRIGILEVGILSAQNLLPMKSKSGRTTDAYCVAKYGNKWVRTRTLLDTLAPRWNEQY 649
Query: 421 TWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTP 480
TWEV+DPCTVITIGVFDNCH+NGSKDD+ DQRIGKVRIRLSTLET+R+YTHYYPLLVL+P
Sbjct: 650 TWEVHDPCTVITIGVFDNCHINGSKDDSRDQRIGKVRIRLSTLETNRIYTHYYPLLVLSP 709
Query: 481 S-GLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQIVAA 539
S GLKK+GEL LALRFTCTAWV+MV +YGMPLLPKMHYVQPIPV+ ID LRHQAMQIVAA
Sbjct: 710 SAGLKKHGELQLALRFTCTAWVNMVAQYGMPLLPKMHYVQPIPVLQIDALRHQAMQIVAA 769
Query: 540 RLGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELFS---AICRWFNDICTWRNP 596
RL RAEPPL+RE+VEYMLDVDYHM+SLR+SKANF R+M L S A+C+ +NDIC WRNP
Sbjct: 770 RLARAEPPLKREIVEYMLDVDYHMFSLRRSKANFCRMMSLLSGITAVCKLYNDICNWRNP 829
Query: 597 VETVLLHVLFLILVFYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAHLDE 656
V T L+H+LFLILV YPELILPT+F YLF+IG+WNYR+RPRHPP +DA+LSQA
Sbjct: 830 VTTCLVHILFLILVCYPELILPTVFFYLFVIGVWNYRYRPRHPPHMDARLSQA------- 882
Query: 657 LVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQAILC 716
EF DEL+EEFD+FP+++PSD +RMRY+RLR V G++QTVVGDLA+Q ER QAIL
Sbjct: 883 ---EFAHPDELEEEFDTFPSTQPSDRIRMRYDRLRHVSGRVQTVVGDLATQGERAQAILS 939
Query: 717 WRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPS 776
WRD RAT IFLIFS IWA+F Y+TPFQVVAVL+GLY+LRHPRFRSKMPSVPVNFFK PS
Sbjct: 940 WRDPRATAIFLIFSLIWAIFIYITPFQVVAVLVGLYLLRHPRFRSKMPSVPVNFFKRLPS 999
Query: 777 KSDMLI 782
KSDML+
Sbjct: 1000 KSDMLL 1005
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460739|ref|XP_002273003.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1258 bits (3254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/786 (76%), Positives = 682/786 (86%), Gaps = 15/786 (1%)
Query: 1 MPKTNPEFLLVETSPPLAARLRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGS 60
+P+ NPEF LVET PP+AAR+ YRG +KTAS+YDLVEQMHYL+V VVKAR+LPVMD++GS
Sbjct: 228 IPRQNPEFGLVETRPPVAARMGYRGANKTASTYDLVEQMHYLYVTVVKARDLPVMDITGS 287
Query: 61 LDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGR 120
LDPYVEVKLGNYKG KHLEKNQNPVWNQIFAFSKERLQSNL+E+ VKDKDIGKDDFVGR
Sbjct: 288 LDPYVEVKLGNYKGTTKHLEKNQNPVWNQIFAFSKERLQSNLIEIIVKDKDIGKDDFVGR 347
Query: 121 VTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDA 180
VTF+L +VP RVPPDSPLAPQWY+LEDR+G K T GE+MLAVW+GTQADE + +AWHSDA
Sbjct: 348 VTFELSDVPVRVPPDSPLAPQWYKLEDRRGVK-TGGEVMLAVWMGTQADECYPDAWHSDA 406
Query: 181 HNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRP 240
H+IS NLA T SKVYFSPKLYYLRV + EAQDLVP E+GR A VKIQLGN VR T+P
Sbjct: 407 HSISHENLAYTRSKVYFSPKLYYLRVHIIEAQDLVPWEKGRVVQASVKIQLGNQVRATKP 466
Query: 241 SHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTK 300
RS++ WNEE MFVASEPFED II++VEDR+GPGKDEILGR IP+R+VP R ++TK
Sbjct: 467 FQARSLSAGWNEEFMFVASEPFEDFIIISVEDRVGPGKDEILGRLVIPIRDVPPRIDSTK 526
Query: 301 LPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMS 360
LPD RWFNLHKP E +KK+ KFSSKI +R CLEAGYHVLDESTHFSSDLQPSS
Sbjct: 527 LPDARWFNLHKPYFGEGESEKKKEIKFSSKIYLRLCLEAGYHVLDESTHFSSDLQPSSKL 586
Query: 361 LRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQY 420
LR+ IGILE+GILSA+NL+PM SK G+ TDAYCVAKYGNKW+RTRT+LDTL PRWNEQY
Sbjct: 587 LRRPRIGILEVGILSAQNLLPMKSKSGRTTDAYCVAKYGNKWVRTRTLLDTLAPRWNEQY 646
Query: 421 TWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTP 480
TWEV+DPCTVITIGVFDNCH+NGSKDD+ DQRIGKVRIRLSTLET+R+YTHYYPLLVL+P
Sbjct: 647 TWEVHDPCTVITIGVFDNCHINGSKDDSRDQRIGKVRIRLSTLETNRIYTHYYPLLVLSP 706
Query: 481 S-GLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQIVAA 539
S GLKK+GEL LALRFTCTAWV+MV +YGMPLLPKMHYVQPIPV+ ID LRHQAMQIVAA
Sbjct: 707 SAGLKKHGELQLALRFTCTAWVNMVAQYGMPLLPKMHYVQPIPVLQIDALRHQAMQIVAA 766
Query: 540 RLGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELFS---AICRWFNDICTWRNP 596
RL RAEPPL+RE+VEYMLDVDYHM+SLR+SKANF R+M L S A+C+ +NDIC WRNP
Sbjct: 767 RLARAEPPLKREIVEYMLDVDYHMFSLRRSKANFCRMMSLLSGITAVCKLYNDICNWRNP 826
Query: 597 VETVLLHVLFLILVFYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAHLDE 656
V T L+H+LFLILV YPELILPT+F YLF+IG+WNYR+RPRHPP +DA+LSQA
Sbjct: 827 VTTCLVHILFLILVCYPELILPTVFFYLFVIGVWNYRYRPRHPPHMDARLSQA------- 879
Query: 657 LVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQAILC 716
EF DEL+EEFD+FP+++PSD +RMRY+RLR V G++QTVVGDLA+Q ER QAIL
Sbjct: 880 ---EFAHPDELEEEFDTFPSTQPSDRIRMRYDRLRHVSGRVQTVVGDLATQGERAQAILS 936
Query: 717 WRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPS 776
WRD RAT IFLIFS IWA+F Y+TPFQVVAVL+GLY+LRHPRFRSKMPSVPVNFFK PS
Sbjct: 937 WRDPRATAIFLIFSLIWAIFIYITPFQVVAVLVGLYLLRHPRFRSKMPSVPVNFFKRLPS 996
Query: 777 KSDMLI 782
KSDML+
Sbjct: 997 KSDMLL 1002
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561614|ref|XP_002521817.1| synaptotagmin, putative [Ricinus communis] gi|223539030|gb|EEF40627.1| synaptotagmin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1248 bits (3228), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/786 (79%), Positives = 687/786 (87%), Gaps = 21/786 (2%)
Query: 1 MPKTNPEFLLVETSPPLAARLRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGS 60
+P+ NPE+LLVET PP+AARLRYRGGDKT S+YDLVEQMHYL+V+VVKAR+LPVMDV+GS
Sbjct: 264 VPRQNPEYLLVETRPPVAARLRYRGGDKTTSTYDLVEQMHYLYVSVVKARDLPVMDVTGS 323
Query: 61 LDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGR 120
LDPYVEVKLGNYKG KHLEKNQ+PVWNQIFAFSK+RLQ+NL+EVTVKDKD KDDFVGR
Sbjct: 324 LDPYVEVKLGNYKGRTKHLEKNQHPVWNQIFAFSKDRLQANLLEVTVKDKDFVKDDFVGR 383
Query: 121 VTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDA 180
+ FDL EVP RVPPDSPLAPQWY+LED+KGDK T+GEIMLAVW+GTQADESF EAWH+DA
Sbjct: 384 IPFDLSEVPLRVPPDSPLAPQWYKLEDKKGDK-TKGEIMLAVWMGTQADESFPEAWHNDA 442
Query: 181 HNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRP 240
H+I TNLA+T SKVYFSPKLYYLRV V EAQDL PSE+GRAPD YVK+QLGN RVTRP
Sbjct: 443 HDIGHTNLADTRSKVYFSPKLYYLRVHVMEAQDLFPSEKGRAPDVYVKVQLGNQGRVTRP 502
Query: 241 SHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTK 300
+ RS+NP WNEE MFVASEPFED IIV+VEDR+GPGKDEI+GR IPVR VP R ET K
Sbjct: 503 A--RSINPGWNEELMFVASEPFEDYIIVSVEDRVGPGKDEIMGRVIIPVREVPPRRETAK 560
Query: 301 LPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMS 360
LPDPRWFNL KPSL AEE EKKKEKFSSKIL+ CL+ GYHVLDESTHFSSDLQPSS
Sbjct: 561 LPDPRWFNLFKPSL-AEEEGEKKKEKFSSKILLCLCLDTGYHVLDESTHFSSDLQPSSKF 619
Query: 361 LRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQY 420
LRK IGILELGILSA+NL+P+ S K TDAYCVAKYGNKW+RTRT+LD L+PRWNEQY
Sbjct: 620 LRKERIGILELGILSARNLLPLKS---KATDAYCVAKYGNKWVRTRTLLDNLNPRWNEQY 676
Query: 421 TWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTP 480
TW+V+DPCTVITIGVFDNCH++GSK+DA D+RIGKVRIRLSTLETDR+YTHYYPLLVL P
Sbjct: 677 TWDVFDPCTVITIGVFDNCHISGSKEDAKDKRIGKVRIRLSTLETDRIYTHYYPLLVLQP 736
Query: 481 S-GLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQIVAA 539
+ GLKK+GE+ LALRFTCTAWV+MVT+YG PLLPKMHY+QPI V ID LRHQAMQIVAA
Sbjct: 737 AGGLKKHGEIQLALRFTCTAWVNMVTQYGKPLLPKMHYIQPISVRHIDWLRHQAMQIVAA 796
Query: 540 RLGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELFS---AICRWFNDICTWRNP 596
RL RAEPPLRRE VEYMLDVDYHMWSLR+SKANF RIM L S A+ +WFNDICTWRNP
Sbjct: 797 RLTRAEPPLRREAVEYMLDVDYHMWSLRRSKANFARIMSLLSGVAAVFKWFNDICTWRNP 856
Query: 597 VETVLLHVLFLILVFYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAHLDE 656
V T L+HVLFLILV YPELILPTIFLYLF+IG+WNYRFRPRHP +D +LSQA H
Sbjct: 857 VTTCLVHVLFLILVCYPELILPTIFLYLFVIGVWNYRFRPRHPSHMDIRLSQADTVH--- 913
Query: 657 LVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQAILC 716
DELDEEFDSFPTSRP+D VRMRY+RLRSV G++QTVVGDLASQ ER QAIL
Sbjct: 914 -------PDELDEEFDSFPTSRPADIVRMRYDRLRSVAGRVQTVVGDLASQGERAQAILS 966
Query: 717 WRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPS 776
WRD RAT IF+IFS IWAVF Y+TPFQVVAVL+GLY+LRHPRFR KMPSVPVNFFK PS
Sbjct: 967 WRDPRATAIFIIFSLIWAVFIYITPFQVVAVLVGLYLLRHPRFRGKMPSVPVNFFKRLPS 1026
Query: 777 KSDMLI 782
KSDML+
Sbjct: 1027 KSDMLL 1032
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297845280|ref|XP_002890521.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336363|gb|EFH66780.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1240 bits (3208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/790 (75%), Positives = 684/790 (86%), Gaps = 20/790 (2%)
Query: 2 PKTNPEFLLVETSPPLAARLR----YRG-GDKTASSYDLVEQMHYLFVNVVKARNLPVMD 56
P+ NPEF L+ETSPPLAAR+R YR GDKT+S+YDLVEQMHYL+V+VVKAR+LPVMD
Sbjct: 247 PRQNPEFQLIETSPPLAARMRQSYYYRNSGDKTSSTYDLVEQMHYLYVSVVKARDLPVMD 306
Query: 57 VSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI-GKD 115
VSGSLDPYVEVKLGNYKG+ KHLEKN NP+W QIFAFSKERLQSNL+EVTVKDKD+ KD
Sbjct: 307 VSGSLDPYVEVKLGNYKGLTKHLEKNSNPIWKQIFAFSKERLQSNLLEVTVKDKDLLTKD 366
Query: 116 DFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEA 175
DFVGRV DL EVP RVPPDSPLAPQWYRLED+KG K +GEIMLAVW+GTQADESF +A
Sbjct: 367 DFVGRVHIDLTEVPLRVPPDSPLAPQWYRLEDKKGMKTNRGEIMLAVWMGTQADESFPDA 426
Query: 176 WHSDAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLV 235
WHSDAH +S +NL+NT SKVYFSPKLYYLR+ V EAQDLVPS++GR PD VKIQ G +
Sbjct: 427 WHSDAHRVSHSNLSNTRSKVYFSPKLYYLRIHVMEAQDLVPSDKGRVPDVVVKIQAGFQM 486
Query: 236 RVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQR 295
R TR +R++NP W+EE MFV SEPFED++IV+V+DRIGPGKDEILGR FIPVR+VP R
Sbjct: 487 RATRTPQMRTMNPQWHEELMFVVSEPFEDMVIVSVDDRIGPGKDEILGRVFIPVRDVPVR 546
Query: 296 HETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQ 355
E K+PDPRWFNL + S+S EE EK+KEKFSSKIL+R C+EAGYHVLDESTHFSSDLQ
Sbjct: 547 QEVGKMPDPRWFNLQRHSMSMEEETEKRKEKFSSKILLRVCIEAGYHVLDESTHFSSDLQ 606
Query: 356 PSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPR 415
PSS LRK SIGILELGILSA+NLMPM KDG++TD YCVAKYGNKW+RTRT+LD L P+
Sbjct: 607 PSSKHLRKPSIGILELGILSARNLMPMKGKDGRMTDPYCVAKYGNKWVRTRTLLDALAPK 666
Query: 416 WNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475
WNEQYTWEV+DPCTVITIGVFDN HVN D+ DQRIGKVR+RLSTLETDR+YTHYYPL
Sbjct: 667 WNEQYTWEVHDPCTVITIGVFDNSHVNDG-GDSRDQRIGKVRVRLSTLETDRVYTHYYPL 725
Query: 476 LVLTPSGLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQ 535
LVLTP GLKKNGEL LALR+TCT +V+M+ +YG PLLPKMHY+QPIPV ID LRHQAMQ
Sbjct: 726 LVLTPGGLKKNGELQLALRYTCTGFVNMMAQYGRPLLPKMHYIQPIPVRHIDLLRHQAMQ 785
Query: 536 IVAARLGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELFSA---ICRWFNDICT 592
IVA RL R+EPPLRREVVEYMLDVDYHM+SLR+SKANF RIM L S+ +C+WFNDICT
Sbjct: 786 IVATRLSRSEPPLRREVVEYMLDVDYHMFSLRRSKANFSRIMSLLSSVTLVCKWFNDICT 845
Query: 593 WRNPVETVLLHVLFLILVFYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINA 652
WRNP+ T L+HVLFLILV YPELILPT+FLYLF+IGMWNYR+RPRHPP +DA++SQA NA
Sbjct: 846 WRNPITTCLVHVLFLILVCYPELILPTVFLYLFVIGMWNYRYRPRHPPHMDARVSQADNA 905
Query: 653 HLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQ 712
H DELDEEFD+FPTSRP+D VRMRY+RLRSVGG++QTVVGDLA+Q ER+Q
Sbjct: 906 H----------PDELDEEFDTFPTSRPADIVRMRYDRLRSVGGRVQTVVGDLATQGERIQ 955
Query: 713 AILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFK 772
A+L WRD RAT +F++F+ IWAVF YVTPFQV+A++IGL+MLRHPRFRS+MPSVP NFFK
Sbjct: 956 ALLSWRDPRATALFIVFALIWAVFIYVTPFQVIAIIIGLFMLRHPRFRSRMPSVPANFFK 1015
Query: 773 SFPSKSDMLI 782
P+KSDML+
Sbjct: 1016 RLPAKSDMLL 1025
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15219915|ref|NP_173675.1| C2 domain-containing protein [Arabidopsis thaliana] gi|6587829|gb|AAF18518.1|AC006551_4 Highly similar to phosphoribosylanthranilate transferase [Arabidopsis thaliana] gi|332192139|gb|AEE30260.1| C2 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1240 bits (3208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/789 (75%), Positives = 684/789 (86%), Gaps = 20/789 (2%)
Query: 3 KTNPEFLLVETSPPLAARLR----YRG-GDKTASSYDLVEQMHYLFVNVVKARNLPVMDV 57
+ NPEF L+ETSPPLAAR+R YR GDKT+S+YDLVEQMHYL+V+VVKAR+LPVMDV
Sbjct: 252 QQNPEFQLIETSPPLAARMRQSYYYRSSGDKTSSTYDLVEQMHYLYVSVVKARDLPVMDV 311
Query: 58 SGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI-GKDD 116
SGSLDPYVEVKLGNYKG+ KHLEKN NP+W QIFAFSKERLQSNL+EVTVKDKD+ KDD
Sbjct: 312 SGSLDPYVEVKLGNYKGLTKHLEKNSNPIWKQIFAFSKERLQSNLLEVTVKDKDLLTKDD 371
Query: 117 FVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAW 176
FVGRV DL EVP RVPPDSPLAPQWYRLED+KG K +GEIMLAVW+GTQADESF +AW
Sbjct: 372 FVGRVHIDLTEVPLRVPPDSPLAPQWYRLEDKKGMKTNRGEIMLAVWMGTQADESFPDAW 431
Query: 177 HSDAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVR 236
HSDAH +S +NL+NT SKVYFSPKLYYLR+ V EAQDLVPS++GR PDA VKIQ GN +R
Sbjct: 432 HSDAHRVSHSNLSNTRSKVYFSPKLYYLRIHVMEAQDLVPSDKGRVPDAIVKIQAGNQMR 491
Query: 237 VTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRH 296
TR +R++NP W+EE MFV SEPFED++IV+V+DRIGPGKDEILGR FIPVR+VP R
Sbjct: 492 ATRTPQMRTMNPQWHEELMFVVSEPFEDMVIVSVDDRIGPGKDEILGRVFIPVRDVPVRQ 551
Query: 297 ETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQP 356
E K+PDPRWFNL + S+S EE EK+KEKFSSKIL+R C+EAGYHVLDESTHFSSDLQP
Sbjct: 552 EVGKMPDPRWFNLQRHSMSMEEENEKRKEKFSSKILLRVCIEAGYHVLDESTHFSSDLQP 611
Query: 357 SSMSLRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRW 416
SS LRK SIGILELGILSA+NLMPM KDG++TD YCVAKYGNKW+RTRT+LD L P+W
Sbjct: 612 SSKHLRKPSIGILELGILSARNLMPMKGKDGRMTDPYCVAKYGNKWVRTRTLLDALAPKW 671
Query: 417 NEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476
NEQYTWEV+DPCTVITIGVFDN HVN D DQRIGKVR+RLSTLETDR+YTH+YPLL
Sbjct: 672 NEQYTWEVHDPCTVITIGVFDNSHVNDGGDFK-DQRIGKVRVRLSTLETDRVYTHFYPLL 730
Query: 477 VLTPSGLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQI 536
VLTP GLKKNGEL LALR+TCT +V+M+ +YG PLLPKMHY+QPIPV ID LRHQAMQI
Sbjct: 731 VLTPGGLKKNGELQLALRYTCTGFVNMMAQYGRPLLPKMHYIQPIPVRHIDLLRHQAMQI 790
Query: 537 VAARLGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELFSA---ICRWFNDICTW 593
VA RL R+EPPLRREVVEYMLDVDYHM+SLR+SKANF RIM L S+ +C+WFNDICTW
Sbjct: 791 VATRLSRSEPPLRREVVEYMLDVDYHMFSLRRSKANFSRIMSLLSSVTLVCKWFNDICTW 850
Query: 594 RNPVETVLLHVLFLILVFYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAH 653
RNP+ T L+HVLFLILV YPELILPT+FLYLF+IGMWNYR+RPRHPP +DA++SQA NAH
Sbjct: 851 RNPITTCLVHVLFLILVCYPELILPTVFLYLFVIGMWNYRYRPRHPPHMDARVSQADNAH 910
Query: 654 LDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQA 713
DELDEEFD+FPTSRP+D VRMRY+RLRSVGG++QTVVGDLA+Q ER+QA
Sbjct: 911 ----------PDELDEEFDTFPTSRPADIVRMRYDRLRSVGGRVQTVVGDLATQGERIQA 960
Query: 714 ILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFKS 773
+L WRD RAT +F++F+ IWAVF YVTPFQV+A++IGL+MLRHPRFRS+MPSVP NFFK
Sbjct: 961 LLSWRDPRATALFIVFALIWAVFIYVTPFQVIAIIIGLFMLRHPRFRSRMPSVPANFFKR 1020
Query: 774 FPSKSDMLI 782
P+KSDML+
Sbjct: 1021 LPAKSDMLL 1029
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3287696|gb|AAC25524.1| Strong similarity to phosphoribosylanthranilate transferase gb|D86180 from Pisum sativum. This ORF may be part of a larger gene that lies in the overlapping region [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1237 bits (3200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/789 (75%), Positives = 684/789 (86%), Gaps = 20/789 (2%)
Query: 3 KTNPEFLLVETSPPLAARLR----YRG-GDKTASSYDLVEQMHYLFVNVVKARNLPVMDV 57
+ NPEF L+ETSPPLAAR+R YR GDKT+S+YDLVEQMHYL+V+VVKAR+LPVMDV
Sbjct: 6 QQNPEFQLIETSPPLAARMRQSYYYRSSGDKTSSTYDLVEQMHYLYVSVVKARDLPVMDV 65
Query: 58 SGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI-GKDD 116
SGSLDPYVEVKLGNYKG+ KHLEKN NP+W QIFAFSKERLQSNL+EVTVKDKD+ KDD
Sbjct: 66 SGSLDPYVEVKLGNYKGLTKHLEKNSNPIWKQIFAFSKERLQSNLLEVTVKDKDLLTKDD 125
Query: 117 FVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAW 176
FVGRV DL EVP RVPPDSPLAPQWYRLED+KG K +GEIMLAVW+GTQADESF +AW
Sbjct: 126 FVGRVHIDLTEVPLRVPPDSPLAPQWYRLEDKKGMKTNRGEIMLAVWMGTQADESFPDAW 185
Query: 177 HSDAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVR 236
HSDAH +S +NL+NT SKVYFSPKLYYLR+ V EAQDLVPS++GR PDA VKIQ GN +R
Sbjct: 186 HSDAHRVSHSNLSNTRSKVYFSPKLYYLRIHVMEAQDLVPSDKGRVPDAIVKIQAGNQMR 245
Query: 237 VTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRH 296
TR +R++NP W+EE MFV SEPFED++IV+V+DRIGPGKDEILGR FIPVR+VP R
Sbjct: 246 ATRTPQMRTMNPQWHEELMFVVSEPFEDMVIVSVDDRIGPGKDEILGRVFIPVRDVPVRQ 305
Query: 297 ETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQP 356
E K+PDPRWFNL + S+S EE EK+KEKFSSKIL+R C+EAGYHVLDESTHFSSDLQP
Sbjct: 306 EVGKMPDPRWFNLQRHSMSMEEENEKRKEKFSSKILLRVCIEAGYHVLDESTHFSSDLQP 365
Query: 357 SSMSLRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRW 416
SS LRK SIGILELGILSA+NLMPM KDG++TD YCVAKYGNKW+RTRT+LD L P+W
Sbjct: 366 SSKHLRKPSIGILELGILSARNLMPMKGKDGRMTDPYCVAKYGNKWVRTRTLLDALAPKW 425
Query: 417 NEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476
NEQYTWEV+DPCTVITIGVFDN HVN D DQRIGKVR+RLSTLETDR+YTH+YPLL
Sbjct: 426 NEQYTWEVHDPCTVITIGVFDNSHVNDGGDFK-DQRIGKVRVRLSTLETDRVYTHFYPLL 484
Query: 477 VLTPSGLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQI 536
VLTP GLKKNGEL LALR+TCT +V+M+ +YG PLLPKMHY+QPIPV ID LRHQAMQI
Sbjct: 485 VLTPGGLKKNGELQLALRYTCTGFVNMMAQYGRPLLPKMHYIQPIPVRHIDLLRHQAMQI 544
Query: 537 VAARLGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELFSA---ICRWFNDICTW 593
VA RL R+EPPLRREVVEYMLDVDYHM+SLR+SKANF RIM L S+ +C+WFNDICTW
Sbjct: 545 VATRLSRSEPPLRREVVEYMLDVDYHMFSLRRSKANFSRIMSLLSSVTLVCKWFNDICTW 604
Query: 594 RNPVETVLLHVLFLILVFYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAH 653
RNP+ T L+HVLFLILV YPELILPT+FLYLF+IGMWNYR+RPRHPP +DA++SQA NAH
Sbjct: 605 RNPITTCLVHVLFLILVCYPELILPTVFLYLFVIGMWNYRYRPRHPPHMDARVSQADNAH 664
Query: 654 LDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQA 713
DELDEEFD+FPTSRP+D VRMRY+RLRSVGG++QTVVGDLA+Q ER+QA
Sbjct: 665 ----------PDELDEEFDTFPTSRPADIVRMRYDRLRSVGGRVQTVVGDLATQGERIQA 714
Query: 714 ILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFKS 773
+L WRD RAT +F++F+ IWAVF YVTPFQV+A++IGL+MLRHPRFRS+MPSVP NFFK
Sbjct: 715 LLSWRDPRATALFIVFALIWAVFIYVTPFQVIAIIIGLFMLRHPRFRSRMPSVPANFFKR 774
Query: 774 FPSKSDMLI 782
P+KSDML+
Sbjct: 775 LPAKSDMLL 783
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135999|ref|XP_002327356.1| predicted protein [Populus trichocarpa] gi|222835726|gb|EEE74161.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1236 bits (3199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/785 (76%), Positives = 680/785 (86%), Gaps = 16/785 (2%)
Query: 1 MPKTNPEFLLVETSPPLAARLRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGS 60
MP+ NPEFLLVETSPP+AAR+RYRG DK AS+YDLVEQMHYL+V+VVKAR+LPVMDVSGS
Sbjct: 3 MPRQNPEFLLVETSPPVAARMRYRGWDKMASTYDLVEQMHYLYVSVVKARDLPVMDVSGS 62
Query: 61 LDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGR 120
LDPYVEVKLGNYKG K+LEKNQ+PVW QIFAF+K+RLQSNL+EVTVKDKD GKDDFVGR
Sbjct: 63 LDPYVEVKLGNYKGKTKYLEKNQSPVWTQIFAFAKDRLQSNLLEVTVKDKDFGKDDFVGR 122
Query: 121 VTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDA 180
V FDL EVP RVPPDSPLAPQWY LED+KG K T+GEIMLAVW+GTQADESF EAWHSDA
Sbjct: 123 VFFDLSEVPLRVPPDSPLAPQWYILEDKKGVK-TRGEIMLAVWMGTQADESFPEAWHSDA 181
Query: 181 HNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRP 240
H+IS TNL+NT SKVYFSPKLYYLRV V EAQDLVPS+ GR PD YVK+QLGN +RVT+P
Sbjct: 182 HDISHTNLSNTRSKVYFSPKLYYLRVHVIEAQDLVPSDRGRMPDVYVKVQLGNQLRVTKP 241
Query: 241 SHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTK 300
S +R++NP+WN+E + VASEPFED IIV+VEDRIG GK EILGR + VR+VP R ET K
Sbjct: 242 SEMRTINPIWNDELILVASEPFEDFIIVSVEDRIGQGKVEILGRVILSVRDVPTRLETHK 301
Query: 301 LPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMS 360
LPDPRW NL +PS EEG +KK + SSKIL+ CL+AGYHVLDESTHFSSDLQPSS
Sbjct: 302 LPDPRWLNLLRPSF-IEEGDKKKDKF-SSKILLCLCLDAGYHVLDESTHFSSDLQPSSKH 359
Query: 361 LRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQY 420
LRK +IGILELGILSA+NL+P+ KDG+ TDAYCV+KYGNKW+RTRTILDTL+PRWNEQY
Sbjct: 360 LRKQNIGILELGILSARNLLPLKGKDGRTTDAYCVSKYGNKWVRTRTILDTLNPRWNEQY 419
Query: 421 TWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTP 480
TW+VYDPCTVITIGVFDNCH+NGSK+DA DQRIGKVRIRLSTLET+R+YTHYYPLLVLT
Sbjct: 420 TWDVYDPCTVITIGVFDNCHINGSKEDARDQRIGKVRIRLSTLETNRIYTHYYPLLVLTH 479
Query: 481 SGLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQIVAAR 540
SGLKK+GELHLALRFTCTAWV+M+ YG PLLPKMHY PI V ID LRHQAMQIVAAR
Sbjct: 480 SGLKKHGELHLALRFTCTAWVNMLAHYGKPLLPKMHYYHPISVRHIDWLRHQAMQIVAAR 539
Query: 541 LGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELFS---AICRWFNDICTWRNPV 597
L R+EPPLRRE VEYMLDVDYHMWSLR+SKAN R+M + S A+C+WFNDIC WRNP+
Sbjct: 540 LARSEPPLRREAVEYMLDVDYHMWSLRRSKANVHRMMSMLSGVTAVCKWFNDICYWRNPI 599
Query: 598 ETVLLHVLFLILVFYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAHLDEL 657
T L+HVLF ILV YPELILPTIFLYLF+IG+WNYRFRPRHPP +D +LSQA NAH
Sbjct: 600 TTCLVHVLFFILVCYPELILPTIFLYLFVIGLWNYRFRPRHPPHMDTRLSQADNAH---- 655
Query: 658 VKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQAILCW 717
DELDEEFD+FP SRPSD VRMRY+R+RSV G++QTVVGDLASQ ER QA+L W
Sbjct: 656 ------PDELDEEFDTFPASRPSDIVRMRYDRMRSVAGRVQTVVGDLASQGERAQALLSW 709
Query: 718 RDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPSK 777
RD RAT IF++FS I AV YVT FQVVAVL+GLY+LRHPRFRS+MPSVPVNFFK PS+
Sbjct: 710 RDPRATAIFILFSLIGAVLIYVTLFQVVAVLVGLYVLRHPRFRSRMPSVPVNFFKRLPSR 769
Query: 778 SDMLI 782
+DML+
Sbjct: 770 ADMLL 774
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081134|emb|CBI18160.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1230 bits (3183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 586/771 (76%), Positives = 669/771 (86%), Gaps = 15/771 (1%)
Query: 1 MPKTNPEFLLVETSPPLAARLRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGS 60
+P+ NPEF LVET PP+AAR+ YRG +KTAS+YDLVEQMHYL+V VVKAR+LPVMD++GS
Sbjct: 159 IPRQNPEFGLVETRPPVAARMGYRGANKTASTYDLVEQMHYLYVTVVKARDLPVMDITGS 218
Query: 61 LDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGR 120
LDPYVEVKLGNYKG KHLEKNQNPVWNQIFAFSKERLQSNL+E+ VKDKDIGKDDFVGR
Sbjct: 219 LDPYVEVKLGNYKGTTKHLEKNQNPVWNQIFAFSKERLQSNLIEIIVKDKDIGKDDFVGR 278
Query: 121 VTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDA 180
VTF+L +VP RVPPDSPLAPQWY+LEDR+G K T GE+MLAVW+GTQADE + +AWHSDA
Sbjct: 279 VTFELSDVPVRVPPDSPLAPQWYKLEDRRGVK-TGGEVMLAVWMGTQADECYPDAWHSDA 337
Query: 181 HNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRP 240
H+IS NLA T SKVYFSPKLYYLRV + EAQDLVP E+GR A VKIQLGN VR T+P
Sbjct: 338 HSISHENLAYTRSKVYFSPKLYYLRVHIIEAQDLVPWEKGRVVQASVKIQLGNQVRATKP 397
Query: 241 SHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTK 300
RS++ WNEE MFVASEPFED II++VEDR+GPGKDEILGR IP+R+VP R ++TK
Sbjct: 398 FQARSLSAGWNEEFMFVASEPFEDFIIISVEDRVGPGKDEILGRLVIPIRDVPPRIDSTK 457
Query: 301 LPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMS 360
LPD RWFNLHKP E +KK+ KFSSKI +R CLEAGYHVLDESTHFSSDLQPSS
Sbjct: 458 LPDARWFNLHKPYFGEGESEKKKEIKFSSKIYLRLCLEAGYHVLDESTHFSSDLQPSSKL 517
Query: 361 LRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQY 420
LR+ IGILE+GILSA+NL+PM SK G+ TDAYCVAKYGNKW+RTRT+LDTL PRWNEQY
Sbjct: 518 LRRPRIGILEVGILSAQNLLPMKSKSGRTTDAYCVAKYGNKWVRTRTLLDTLAPRWNEQY 577
Query: 421 TWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTP 480
TWEV+DPCTVITIGVFDNCH+NGSKDD+ DQRIGKVRIRLSTLET+R+YTHYYPLLVL+P
Sbjct: 578 TWEVHDPCTVITIGVFDNCHINGSKDDSRDQRIGKVRIRLSTLETNRIYTHYYPLLVLSP 637
Query: 481 S-GLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQIVAA 539
S GLKK+GEL LALRFTCTAWV+MV +YGMPLLPKMHYVQPIPV+ ID LRHQAMQIVAA
Sbjct: 638 SAGLKKHGELQLALRFTCTAWVNMVAQYGMPLLPKMHYVQPIPVLQIDALRHQAMQIVAA 697
Query: 540 RLGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELFS---AICRWFNDICTWRNP 596
RL RAEPPL+RE+VEYMLDVDYHM+SLR+SKANF R+M L S A+C+ +NDIC WRNP
Sbjct: 698 RLARAEPPLKREIVEYMLDVDYHMFSLRRSKANFCRMMSLLSGITAVCKLYNDICNWRNP 757
Query: 597 VETVLLHVLFLILVFYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAHLDE 656
V T L+H+LFLILV YPELILPT+F YLF+IG+WNYR+RPRHPP +DA+LSQA
Sbjct: 758 VTTCLVHILFLILVCYPELILPTVFFYLFVIGVWNYRYRPRHPPHMDARLSQA------- 810
Query: 657 LVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQAILC 716
EF DEL+EEFD+FP+++PSD +RMRY+RLR V G++QTVVGDLA+Q ER QAIL
Sbjct: 811 ---EFAHPDELEEEFDTFPSTQPSDRIRMRYDRLRHVSGRVQTVVGDLATQGERAQAILS 867
Query: 717 WRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVP 767
WRD RAT IFLIFS IWA+F Y+TPFQVVAVL+GLY+LRHPRFRSKMPSVP
Sbjct: 868 WRDPRATAIFLIFSLIWAIFIYITPFQVVAVLVGLYLLRHPRFRSKMPSVP 918
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 782 | ||||||
| TAIR|locus:2009492 | 1029 | AT1G22610 "AT1G22610" [Arabido | 0.980 | 0.745 | 0.730 | 0.0 | |
| TAIR|locus:2095853 | 773 | AT3G57880 "AT3G57880" [Arabido | 0.976 | 0.988 | 0.615 | 1.2e-262 | |
| TAIR|locus:2017627 | 776 | AT1G51570 [Arabidopsis thalian | 0.979 | 0.987 | 0.604 | 3e-259 | |
| TAIR|locus:2182305 | 769 | AT5G12970 "AT5G12970" [Arabido | 0.974 | 0.990 | 0.598 | 2.2e-256 | |
| TAIR|locus:2139727 | 1011 | AT4G11610 "AT4G11610" [Arabido | 0.970 | 0.750 | 0.576 | 1.7e-247 | |
| TAIR|locus:2162712 | 1036 | AT5G48060 "AT5G48060" [Arabido | 0.953 | 0.720 | 0.549 | 1.8e-229 | |
| TAIR|locus:2098846 | 972 | AT3G61300 "AT3G61300" [Arabido | 0.932 | 0.75 | 0.536 | 2e-214 | |
| TAIR|locus:2127103 | 1006 | AT4G00700 "AT4G00700" [Arabido | 0.975 | 0.758 | 0.519 | 2e-214 | |
| TAIR|locus:2020280 | 1012 | AT1G04150 "AT1G04150" [Arabido | 0.955 | 0.738 | 0.515 | 1.2e-207 | |
| TAIR|locus:2119742 | 774 | AT4G20080 [Arabidopsis thalian | 0.957 | 0.967 | 0.492 | 1.3e-196 |
| TAIR|locus:2009492 AT1G22610 "AT1G22610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3055 (1080.5 bits), Expect = 0., P = 0.
Identities = 575/787 (73%), Positives = 658/787 (83%)
Query: 5 NPEFLLVETSPPLAARLR----YRG-GDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSG 59
NPEF L+ETSPPLAAR+R YR GDKT+S+YDLVEQMHYL+V+VVKAR+LPVMDVSG
Sbjct: 254 NPEFQLIETSPPLAARMRQSYYYRSSGDKTSSTYDLVEQMHYLYVSVVKARDLPVMDVSG 313
Query: 60 SLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI-GKDDFV 118
SLDPYVEVKLGNYKG+ KHLEKN NP+W QIFAFSKERLQSNL+EVTVKDKD+ KDDFV
Sbjct: 314 SLDPYVEVKLGNYKGLTKHLEKNSNPIWKQIFAFSKERLQSNLLEVTVKDKDLLTKDDFV 373
Query: 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHS 178
GRV DL EVP RVPPDSPLAPQWYRLED+KG K +GEIMLAVW+GTQADESF +AWHS
Sbjct: 374 GRVHIDLTEVPLRVPPDSPLAPQWYRLEDKKGMKTNRGEIMLAVWMGTQADESFPDAWHS 433
Query: 179 DAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVT 238
DAH +S +NL+NT SKVYFSPKLYYLR+ V EAQDLVPS++GR PDA VKIQ GN +R T
Sbjct: 434 DAHRVSHSNLSNTRSKVYFSPKLYYLRIHVMEAQDLVPSDKGRVPDAIVKIQAGNQMRAT 493
Query: 239 RPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHET 298
R +R++NP W+EE MFV SEPFED++IV+V+DRIGPGKDEILGR FIPVR+VP R E
Sbjct: 494 RTPQMRTMNPQWHEELMFVVSEPFEDMVIVSVDDRIGPGKDEILGRVFIPVRDVPVRQEV 553
Query: 299 TKLPDPRWFNLHKPXXXXXXXXXXXXXXXXXXILIRFCLEAGYHVLDESTHFSSDLQPSS 358
K+PDPRWFNL + IL+R C+EAGYHVLDESTHFSSDLQPSS
Sbjct: 554 GKMPDPRWFNLQRHSMSMEEENEKRKEKFSSKILLRVCIEAGYHVLDESTHFSSDLQPSS 613
Query: 359 MSLRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNE 418
LRK SIGILELGILSA+NLMPM KDG++TD YCVAKYGNKW+RTRT+LD L P+WNE
Sbjct: 614 KHLRKPSIGILELGILSARNLMPMKGKDGRMTDPYCVAKYGNKWVRTRTLLDALAPKWNE 673
Query: 419 QYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVL 478
QYTWEV+DPCTVITIGVFDN HVN D DQRIGKVR+RLSTLETDR+YTH+YPLLVL
Sbjct: 674 QYTWEVHDPCTVITIGVFDNSHVNDGGDFK-DQRIGKVRVRLSTLETDRVYTHFYPLLVL 732
Query: 479 TPSGLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQIVA 538
TP GLKKNGEL LALR+TCT +V+M+ +YG PLLPKMHY+QPIPV ID LRHQAMQIVA
Sbjct: 733 TPGGLKKNGELQLALRYTCTGFVNMMAQYGRPLLPKMHYIQPIPVRHIDLLRHQAMQIVA 792
Query: 539 ARLGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELFSAI---CRWFNDICTWRN 595
RL R+EPPLRREVVEYMLDVDYHM+SLR+SKANF RIM L S++ C+WFNDICTWRN
Sbjct: 793 TRLSRSEPPLRREVVEYMLDVDYHMFSLRRSKANFSRIMSLLSSVTLVCKWFNDICTWRN 852
Query: 596 PVETXXXXXXXXXXXXYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAHLD 655
P+ T YPELILPT+FLYLF+IGMWNYR+RPRHPP +DA++SQA NAH
Sbjct: 853 PITTCLVHVLFLILVCYPELILPTVFLYLFVIGMWNYRYRPRHPPHMDARVSQADNAH-- 910
Query: 656 ELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQAIL 715
DELDEEFD+FPTSRP+D VRMRY+RLRSVGG++QTVVGDLA+Q ER+QA+L
Sbjct: 911 --------PDELDEEFDTFPTSRPADIVRMRYDRLRSVGGRVQTVVGDLATQGERIQALL 962
Query: 716 CWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFP 775
WRD RAT +F++F+ IWAVF YVTPFQV+A++IGL+MLRHPRFRS+MPSVP NFFK P
Sbjct: 963 SWRDPRATALFIVFALIWAVFIYVTPFQVIAIIIGLFMLRHPRFRSRMPSVPANFFKRLP 1022
Query: 776 SKSDMLI 782
+KSDML+
Sbjct: 1023 AKSDMLL 1029
|
|
| TAIR|locus:2095853 AT3G57880 "AT3G57880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2527 (894.6 bits), Expect = 1.2e-262, P = 1.2e-262
Identities = 487/791 (61%), Positives = 600/791 (75%)
Query: 1 MPKTNPE-FLLVETSPPLAA-RLRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVS 58
M + PE F L ET P L +L GDK S+YDLVEQM YL+V VVKA+ LP D++
Sbjct: 1 MQRPPPEDFSLKETRPHLGGGKL---SGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMT 57
Query: 59 GSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFV 118
GS DPYVEVKLGNYKG +H EK NP WNQ+FAFSK+R+Q++ +E TVKDKD KDD +
Sbjct: 58 GSCDPYVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLI 117
Query: 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHS 178
GRV FDL EVP RVPPDSPLAPQWYRLEDRKGDK+ +GE+MLAVW GTQADE+F EAWHS
Sbjct: 118 GRVVFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKV-KGELMLAVWFGTQADEAFPEAWHS 176
Query: 179 DAHNISQTN-LANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRV 237
DA +S T+ LAN SKVY SPKL+YLRV V EAQDL+P+++ R P+ YVK +GN
Sbjct: 177 DAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALR 236
Query: 238 TRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHE 297
TR S R++NP+WNE+ MFVA+EPFE+ +I++VEDR+ P KDE+LGR IP++ + +R +
Sbjct: 237 TRVSQSRTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFD 296
Query: 298 TTKLPDPRWFNLHKPXXXXXXXXXXXXXXXXXXILIRFCLEAGYHVLDESTHFSSDLQPS 357
K + RW+NL K I +R CLE GYHVLDESTH+SSDL+P+
Sbjct: 297 H-KPVNSRWYNLEK---HIMVDGEKKETKFASRIHMRICLEGGYHVLDESTHYSSDLRPT 352
Query: 358 SMSLRKGSIGILELGILSAKNLMPMTSKDGK-LTDAYCVAKYGNKWIRTRTILDTLDPRW 416
+ L K +IG+LELGIL+A LMPM +KDG+ TDAYCVAKYG KWIRTRTI+D+ PRW
Sbjct: 353 AKQLWKPNIGVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRW 412
Query: 417 NEQYTWEVYDPCTVITIGVFDNCHVNGSKD--DAIDQRIGKVRIRLSTLETDRLYTHYYP 474
NEQYTWEV+DPCTV+T+GVFDNCH++G + A D RIGKVRIRLSTLETDR+YTH YP
Sbjct: 413 NEQYTWEVFDPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYP 472
Query: 475 LLVLTPSGLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAM 534
LLVL P+G+KK GE+HLA+RFTC++ ++M+ Y PLLPKMHY+ P+ V +D LRHQA
Sbjct: 473 LLVLHPNGVKKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQAT 532
Query: 535 QIVAARLGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELFS---AICRWFNDIC 591
QIV+ RL RAEPPLR+EVVEYMLDV HMWS+R+SKANF RIM + S A+ +WF IC
Sbjct: 533 QIVSMRLTRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQIC 592
Query: 592 TWRNPVETXXXXXXXXXXXXYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAIN 651
W+NP+ T YPELILPTIFLYLFLIG+W YR+RPRHPP +D +LS A +
Sbjct: 593 NWKNPITTVLIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADS 652
Query: 652 AHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERV 711
AH DELDEEFD+FPTSRPSD VRMRY+RLRS+ G++QTVVGDLA+Q ER+
Sbjct: 653 AH----------PDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERL 702
Query: 712 QAILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFF 771
Q++L WRD RAT +F++F I AV YVTPFQVVA+ IG+Y LRHPRFR K+PSVP+NFF
Sbjct: 703 QSLLSWRDPRATALFVLFCLIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFF 762
Query: 772 KSFPSKSDMLI 782
+ P+++D ++
Sbjct: 763 RRLPARTDCML 773
|
|
| TAIR|locus:2017627 AT1G51570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2495 (883.3 bits), Expect = 3.0e-259, P = 3.0e-259
Identities = 479/792 (60%), Positives = 596/792 (75%)
Query: 1 MPKTNPE-FLLVETSPPLAARLRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSG 59
M + PE F L ET P L GDK ++YDLVEQM YL+V VVKA+ LP D++G
Sbjct: 1 MQRPPPEDFSLKETKPHLGGGKVT--GDKLTTTYDLVEQMQYLYVRVVKAKELPGKDLTG 58
Query: 60 SLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVG 119
S DPYVEVKLGNY+G +H EK NP WNQ+FAFSK+R+Q++ +E TVKDKD+ KDD +G
Sbjct: 59 SCDPYVEVKLGNYRGTTRHFEKKSNPEWNQVFAFSKDRVQASYLEATVKDKDLVKDDLIG 118
Query: 120 RVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSD 179
RV FDL E+P RVPPDSPLAPQWYRLED KG K+ +GE+MLAVW GTQADE+F EAWHSD
Sbjct: 119 RVVFDLNEIPKRVPPDSPLAPQWYRLEDGKGQKV-KGELMLAVWFGTQADEAFPEAWHSD 177
Query: 180 AHNISQTN-LANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVT 238
A +S T+ LAN SKVY SPKL+YLRV V EAQDL+PS++GR P+ +VK+ +GN T
Sbjct: 178 AATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPSDKGRYPEVFVKVIMGNQALRT 237
Query: 239 RPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHET 298
R S RS+NP+WNE+ MFV +EPFE+ +I++VEDR+ P KDE+LGR +P++ + +R +
Sbjct: 238 RVSQSRSINPMWNEDLMFVVAEPFEEPLILSVEDRVAPNKDEVLGRCAVPLQYLDKRFDY 297
Query: 299 TKLPDPRWFNLHKPXXXXXXXXXXXXXXXXXXILIRFCLEAGYHVLDESTHFSSDLQPSS 358
+ + RWFNL K I +R CLE GYHVLDESTH+SSDL+P++
Sbjct: 298 RPV-NSRWFNLEK--HVIMEGGEKKEIKFASKIHMRICLEGGYHVLDESTHYSSDLRPTA 354
Query: 359 MSLRKGSIGILELGILSAKNLMPMTSKDGK--LTDAYCVAKYGNKWIRTRTILDTLDPRW 416
L K +IG+LELG+L+A LMPM +K+G TDAYCVAKYG KWIRTRTI+D+ PRW
Sbjct: 355 KQLWKPNIGVLELGVLNATGLMPMKAKEGGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRW 414
Query: 417 NEQYTWEVYDPCTVITIGVFDNCHVNGS-KDDA--IDQRIGKVRIRLSTLETDRLYTHYY 473
NEQYTWEV+DPCTV+T+GVFDNCH++G K++ D RIGKVRIRLSTLE DR+YTH Y
Sbjct: 415 NEQYTWEVFDPCTVVTVGVFDNCHLHGGDKNNGGGKDSRIGKVRIRLSTLEADRVYTHSY 474
Query: 474 PLLVLTPSGLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQA 533
PLLVL PSG+KK GE+HLA+RFTC++ ++M+ Y MPLLPKMHY+ P+ V +D LRHQA
Sbjct: 475 PLLVLHPSGVKKMGEIHLAVRFTCSSLLNMMYMYSMPLLPKMHYLHPLTVSQLDNLRHQA 534
Query: 534 MQIVAARLGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELFS---AICRWFNDI 590
QIV+ RL RAEPPLR+EVVEYMLDV HMWS+R+SKANF RIM + S A+ +WF I
Sbjct: 535 TQIVSTRLTRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFEQI 594
Query: 591 CTWRNPVETXXXXXXXXXXXXYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAI 650
C W+NP+ T YPELILPTIFLYLFLIG+W YR+RPRHPP +D +LS A
Sbjct: 595 CVWKNPITTVLIHILFIILVIYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHAD 654
Query: 651 NAHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCER 710
+AH DELDEEFD+FPTSRPSD VRMRY+RLRS+ G++QTVVGDLA+Q ER
Sbjct: 655 SAH----------PDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGER 704
Query: 711 VQAILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNF 770
Q++L WRD RAT +F++F I AV Y+TPFQVVA IGLY+LRHPR R K+PSVP+NF
Sbjct: 705 FQSLLSWRDPRATALFVLFCLIAAVILYITPFQVVAFAIGLYVLRHPRLRYKLPSVPLNF 764
Query: 771 FKSFPSKSDMLI 782
F+ P+++D ++
Sbjct: 765 FRRLPARTDCML 776
|
|
| TAIR|locus:2182305 AT5G12970 "AT5G12970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2468 (873.8 bits), Expect = 2.2e-256, P = 2.2e-256
Identities = 470/785 (59%), Positives = 583/785 (74%)
Query: 2 PKTNPEFLLVETSPPLAARLRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSL 61
P N +F L ETSP + A GDK S+YDLVEQMHYL+V VVKA+ LP DV+GS
Sbjct: 4 PGQNIDFALKETSPKIGAGSVT--GDKLCSTYDLVEQMHYLYVRVVKAKELPGKDVTGSC 61
Query: 62 DPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRV 121
DPYVEVKLGNY+G+ KH EK NP W Q+FAFSKER+Q++++EV VKDKD+ DD +GR+
Sbjct: 62 DPYVEVKLGNYRGMTKHFEKRSNPEWKQVFAFSKERIQASILEVVVKDKDVVLDDLIGRI 121
Query: 122 TFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDAH 181
FDL E+P RVPPDSPLAPQWYRLEDR G K+ +GE+MLAVW+GTQADE+FS+AWHSDA
Sbjct: 122 MFDLNEIPKRVPPDSPLAPQWYRLEDRHGRKV-KGELMLAVWMGTQADEAFSDAWHSDAA 180
Query: 182 NISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPS 241
+ + + SKVY SPKL+Y+RV V EAQDL+P ++ + P+ YVK LGN TR S
Sbjct: 181 TVGPEGVTHIRSKVYLSPKLWYVRVNVIEAQDLIPHDKTKFPEVYVKAMLGNQTLRTRIS 240
Query: 242 HVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKL 301
+++NP+WNE+ MFV +EPFE+ +I+ VEDR+ P KDE LGR IP++NV +R + L
Sbjct: 241 QTKTLNPMWNEDLMFVVAEPFEEALILAVEDRVAPNKDETLGRCAIPLQNVQRRLDHRPL 300
Query: 302 PDPRWFNLHKPXXXXXXXXXXXXXXXXXXILIRFCLEAGYHVLDESTHFSSDLQPSSMSL 361
+ RWFNL K I +R LE GYHVLDESTH+SSDL+P++ L
Sbjct: 301 -NSRWFNLEK---HIMVEGEQKEIKFASRIHLRIFLEGGYHVLDESTHYSSDLRPTAKQL 356
Query: 362 RKGSIGILELGILSAKNLMPMTSKDGK-LTDAYCVAKYGNKWIRTRTILDTLDPRWNEQY 420
K SIG+LE+GI+SA LMPM SKDGK TDAYCVAKYG KWIRTRTI+D+ P+WNEQY
Sbjct: 357 WKPSIGLLEVGIISAHGLMPMKSKDGKGTTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQY 416
Query: 421 TWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTP 480
TWEV+D CTVIT G FDN H+ G D RIGKVRIRLSTLE DR+YTH YPLLV P
Sbjct: 417 TWEVFDTCTVITFGAFDNGHIPGGSGK--DLRIGKVRIRLSTLEADRIYTHSYPLLVFHP 474
Query: 481 SGLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQIVAAR 540
SG+KK GE+ LA+RFTC + ++M+ Y PLLPKMHY+ P+ V+ +D LRHQAM IV+AR
Sbjct: 475 SGIKKTGEIQLAVRFTCLSLINMLHMYSQPLLPKMHYIHPLSVLQLDSLRHQAMNIVSAR 534
Query: 541 LGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELFS---AICRWFNDICTWRNPV 597
L RAEPPLR+E+VEYMLDVD HMWS+R+SKANF RIM + S A+ +WF+ IC WRNP+
Sbjct: 535 LNRAEPPLRKEIVEYMLDVDSHMWSMRRSKANFFRIMNVLSGLIAVGKWFDQICNWRNPI 594
Query: 598 ETXXXXXXXXXXXXYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAHLDEL 657
T YPELILPT+FLYLFLIG+WN+R+RPRHPP +D +LS A H
Sbjct: 595 TTILIHVLFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAVH---- 650
Query: 658 VKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQAILCW 717
DELDEEFD+FPTSR S+ VRMRY+RLRS+GG++QTV+GDLA+Q ER ++L W
Sbjct: 651 ------PDELDEEFDTFPTSRSSEIVRMRYDRLRSIGGRVQTVIGDLATQGERFLSLLSW 704
Query: 718 RDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPSK 777
RD RAT +F++F I A+ YVTPFQVVA+L G+Y+LRHPRFR K+PSVP+N F+ P++
Sbjct: 705 RDPRATTLFVLFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNLFRRLPAR 764
Query: 778 SDMLI 782
SD L+
Sbjct: 765 SDSLL 769
|
|
| TAIR|locus:2139727 AT4G11610 "AT4G11610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2384 (844.3 bits), Expect = 1.7e-247, P = 1.7e-247
Identities = 455/789 (57%), Positives = 594/789 (75%)
Query: 7 EFLLVETSPPLAARLRYRGG-----DKTASS-YDLVEQMHYLFVNVVKARNLPVMDVSGS 60
+F L ETSP L R GG DKTA+S YDLVE+M++L+V VVKAR LP+MD++GS
Sbjct: 240 DFALKETSPHLGGG-RVVGGRVIHKDKTATSTYDLVERMYFLYVRVVKARELPIMDITGS 298
Query: 61 LDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGR 120
+DP+VEV++GNYKGI +H EK Q+P WNQ+FAF+KER+Q++++EV VKDKD+ KDD+VG
Sbjct: 299 VDPFVEVRVGNYKGITRHFEKRQHPEWNQVFAFAKERMQASVLEVVVKDKDLLKDDYVGF 358
Query: 121 VTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDA 180
V FD+ +VP RVPPDSPLAPQWYRLED+KG+KI +GE+MLAVWIGTQADE+FS+AWHSDA
Sbjct: 359 VRFDINDVPLRVPPDSPLAPQWYRLEDKKGEKI-KGELMLAVWIGTQADEAFSDAWHSDA 417
Query: 181 H---NISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRV 237
+ S A SKVY +P+L+Y+RV V EAQDL+P+++ R PD YVK QLGN V
Sbjct: 418 AMPVDCSPAISAVLRSKVYHAPRLWYVRVNVIEAQDLIPTDKTRFPDVYVKAQLGNQVMK 477
Query: 238 TRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHE 297
TRP R++ VWNE+ +FV +EPFED +++TVEDR+ PGKDEI+GR +IP+ V +R +
Sbjct: 478 TRPCQARTLGAVWNEDFLFVVAEPFEDHLVLTVEDRVAPGKDEIVGRTYIPLNTVEKRAD 537
Query: 298 TTKLPDPRWFNLHKPXXXXXXXXXXXXXXXXXXILIRFCLEAGYHVLDESTHFSSDLQPS 357
+ RW+NL +P I +R CLE GYHVLDESTH+SSDL+PS
Sbjct: 538 DHMI-HARWYNLERPVIVDVDQLKREKFSMR--IHLRVCLEGGYHVLDESTHYSSDLRPS 594
Query: 358 SMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRW 416
+ L + IG+LELGIL+A L PM +++G+ T D +CV KYG KW+RTRT++D L P++
Sbjct: 595 ARPLWRQPIGVLELGILNAVGLHPMKTREGRGTSDTFCVGKYGQKWVRTRTMVDNLCPKY 654
Query: 417 NEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476
NEQYTWEV+DP TV+T+GVFDN + G K + D +IGK+RIRLSTLET R+YTH YPLL
Sbjct: 655 NEQYTWEVFDPATVLTVGVFDNGQL-GEKGNR-DVKIGKIRIRLSTLETGRIYTHSYPLL 712
Query: 477 VLTPSGLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQI 536
VL P+G+KK GELH+A+RFTC ++ +M+ +Y PLLPKMHYV+P V+ D LRHQA+ I
Sbjct: 713 VLHPTGVKKMGELHMAVRFTCISFANMLYQYSKPLLPKMHYVRPFSVMQQDMLRHQAVNI 772
Query: 537 VAARLGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELFS---AICRWFNDICTW 593
VAARLGRAEPPLR+E++E+M D D H+WS+RKSKANF R+M +FS A+ +WF+DIC+W
Sbjct: 773 VAARLGRAEPPLRKEIIEFMSDTDSHLWSMRKSKANFFRMMTVFSGVIAVGKWFSDICSW 832
Query: 594 RNPVETXXXXXXXXXXXXYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAH 653
RNP+ T PELILPT+FLY+FLIG+WNYRFRPR+PP ++ K+SQA H
Sbjct: 833 RNPITTVLVHVLFLMLVCLPELILPTMFLYMFLIGLWNYRFRPRYPPHMNTKISQAEAVH 892
Query: 654 LDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQA 713
DELDEEFD+FPT+R D VR+RY+RLRSV G++QTV+GDLA+Q ER QA
Sbjct: 893 ----------PDELDEEFDTFPTTRNPDMVRLRYDRLRSVAGRIQTVIGDLATQGERFQA 942
Query: 714 ILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFKS 773
+L WRD RAT IF+I FI A+ ++TP Q+V L G + +RHPRFR ++PSVPVNFF+
Sbjct: 943 LLSWRDPRATAIFVILCFIAAIVFFITPIQIVVALAGFFTMRHPRFRHRLPSVPVNFFRR 1002
Query: 774 FPSKSDMLI 782
P+++D ++
Sbjct: 1003 LPARTDSML 1011
|
|
| TAIR|locus:2162712 AT5G48060 "AT5G48060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2214 (784.4 bits), Expect = 1.8e-229, P = 1.8e-229
Identities = 422/768 (54%), Positives = 551/768 (71%)
Query: 26 GDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQN- 84
G++ +YDLVEQM YL+V VVKA+ LP ++G DPYVEVKLGNYKG K ++
Sbjct: 280 GERFTGTYDLVEQMFYLYVRVVKAKELPPGSITGGCDPYVEVKLGNYKGRTKIFDRKTTI 339
Query: 85 PVWNQIFAFSKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWY 143
P WNQ+FAF+KER+QS+++EV VKDK+ +G+DD +G+V FDL E+P RVPP+SPLAPQWY
Sbjct: 340 PEWNQVFAFTKERIQSSVLEVFVKDKETLGRDDILGKVVFDLNEIPTRVPPNSPLAPQWY 399
Query: 144 RLEDRKGD-KITQGEIMLAVWIGTQADESFSEAWHSDAHNISQTNLANTISKVYFSPKLY 202
RLED +G+ K+ +GEIMLAVW+GTQADE+F EAWH+D+ ++ + N SKVY SPKL+
Sbjct: 400 RLEDWRGEGKVVRGEIMLAVWMGTQADEAFPEAWHADSASVHGEGVFNIRSKVYVSPKLW 459
Query: 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPF 262
YLRV V EAQD++PS+ R PD +VK +G T +++ NP+W E+ +FV +EPF
Sbjct: 460 YLRVNVIEAQDMIPSDRNRLPDVFVKASVGMQTLKTSICSIKTTNPLWKEDLVFVVAEPF 519
Query: 263 EDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPXXXXXX-XXX 321
E+ ++++VEDR+ KDE++G+ +P+ NV ++ + RWFNL K
Sbjct: 520 EEQLVISVEDRVHTSKDEVIGKITLPM-NVFEKRLDHRPVHSRWFNLDKYGTGVLEPDAR 578
Query: 322 XXXXXXXXXILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMP 381
I +R CLE GYHV+DEST + SD +P++ L K +G+LE+GIL A L+P
Sbjct: 579 RKEHKFSSRIHLRICLEGGYHVMDESTMYISDTRPTARQLWKQPVGMLEIGILGANGLVP 638
Query: 382 MTSKDGK-LTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCH 440
M KDG+ T+AYCVAKYG KW+RTRTILDTL PRWNEQYTWEVYDPCTVIT+GVFDN H
Sbjct: 639 MKLKDGRGSTNAYCVAKYGQKWVRTRTILDTLSPRWNEQYTWEVYDPCTVITLGVFDNSH 698
Query: 441 VNGSKD---DAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTC 497
+ ++ D+ D RIGKVRIRLSTLE ++YTH +PLLVL P GLKK G+L +++RFT
Sbjct: 699 LGSAQSGTADSRDARIGKVRIRLSTLEAHKIYTHSFPLLVLQPHGLKKTGDLQISVRFTT 758
Query: 498 TAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQIVAARLGRAEPPLRREVVEYML 557
+ +++ YG PLLPKMHY+ P V +D LR+QAM IV+ RLGRAEPPLR+EVVEYML
Sbjct: 759 LSLANIIYNYGHPLLPKMHYLFPFTVNQVDGLRYQAMNIVSTRLGRAEPPLRKEVVEYML 818
Query: 558 DVDYHMWSLRKSKANFQRIMELFSA---ICRWFNDICTWRNPVETXXXXXXXXXXXXYPE 614
DVD H+WS+R+SKANF RIM L S + +W D+C WR PV + YPE
Sbjct: 819 DVDSHLWSMRRSKANFFRIMSLLSGYFLVGKWLEDVCNWRYPVTSVLVNVLFFILVMYPE 878
Query: 615 LILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAHLDELVKEFDTSDELDEEFDSF 674
LILPT+FLY+F IG+WN+R RPRHPP +D KLS A E V DELDEEFD+F
Sbjct: 879 LILPTMFLYMFFIGLWNFRSRPRHPPHMDMKLSWA------EAVGP----DELDEEFDTF 928
Query: 675 PTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQAILCWRDLRATFIFLIFSFIWA 734
PTSR + VR+RY+RLRSV G++QTVVGD+A+Q ER+Q++L WRD RAT +F++F +
Sbjct: 929 PTSRSQELVRLRYDRLRSVAGRIQTVVGDIAAQGERIQSLLSWRDPRATSLFILFCLAAS 988
Query: 735 VFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPSKSDMLI 782
V Y PF+ +A+ GLY LRHP+FRSK+PS+P NFFK PS +D L+
Sbjct: 989 VVLYAMPFKAIALASGLYYLRHPKFRSKLPSLPSNFFKRLPSSTDSLL 1036
|
|
| TAIR|locus:2098846 AT3G61300 "AT3G61300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2072 (734.4 bits), Expect = 2.0e-214, P = 2.0e-214
Identities = 413/770 (53%), Positives = 532/770 (69%)
Query: 25 GGDKTA--SSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKN 82
GG K A S +DLVE M +LF+ +VKARNLP MD++GSLDPY+EVKLGNY G KH EKN
Sbjct: 232 GGGKRARSSDHDLVEPMEFLFIKIVKARNLPSMDLTGSLDPYIEVKLGNYTGKTKHFEKN 291
Query: 83 QNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQW 142
QNPVWN++FAFSK QSN++EV V DKD+ KDDFVG + FDL ++P RV PDSPLAP+W
Sbjct: 292 QNPVWNEVFAFSKSNQQSNVLEVIVMDKDMVKDDFVGLIRFDLNQIPTRVAPDSPLAPEW 351
Query: 143 YRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDAHNISQTNLANTISKVYFSPKLY 202
YR+ + KG GEIMLAVW GTQADE+FS+A +SDA N N ++ SKVY SP+L+
Sbjct: 352 YRVNNEKG-----GEIMLAVWFGTQADEAFSDATYSDALNA--VNKSSLRSKVYHSPRLW 404
Query: 203 YLRVFVFEAQDLV-PSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEP 261
YLRV V EAQDLV + R P+ YVKI+L N V T+PSH S+NP WNEE VA+EP
Sbjct: 405 YLRVNVIEAQDLVIVPDRTRLPNPYVKIRLNNQVVRTKPSH--SLNPRWNEEFTLVAAEP 462
Query: 262 FEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPXXXXXXXXX 321
FEDLII ++EDR+ P ++E LG IP+ + +R + + RWF+L
Sbjct: 463 FEDLII-SIEDRVAPNREETLGEVHIPIGTIDKRIDDNRTVPNRWFSLK-------TENQ 514
Query: 322 XXXXXXXXXILIRFCLEAGYHVLDESTHFSSDLQPSSMSL---RKGSIGILELGILSAKN 378
+ + CLE GYHVLDEST++SSD +PS L ++ S G+LELGIL +
Sbjct: 515 RRVRFATTRLHLNVCLEGGYHVLDESTYYSSDFRPSMKELLSHKQPSFGVLELGILRIEG 574
Query: 379 LMPMTSKDGK--LTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVF 436
L S++GK DAYCVAKYG KW+RTRT+ + L+PR+NEQYTWEVY+P TVITIGVF
Sbjct: 575 LN--LSQEGKKETVDAYCVAKYGTKWVRTRTVTNCLNPRFNEQYTWEVYEPATVITIGVF 632
Query: 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFT 496
DN +N + D +IGK+R+R+STLE R+Y+H YPLLVL PSGLKK GELHLA+RF+
Sbjct: 633 DNNQINSGNGNKGDGKIGKIRVRISTLEAGRIYSHSYPLLVLRPSGLKKMGELHLAIRFS 692
Query: 497 CTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQIVAARLGRAEPPLRREVVEYM 556
C++ M+ +Y PLLPKMHY +P+ V+ + LR A+ +VAARL RAEPPLR+EVVEY+
Sbjct: 693 CSSMFQMLMQYWKPLLPKMHYARPLKVVQQEILRQHAVNLVAARLSRAEPPLRKEVVEYI 752
Query: 557 LDVDYHMWSLRKSKANFQRIMELFSAIC---RWFNDICTWRNPVETXXXXXXXXXXXXYP 613
D + H+WS+RKS+AN R+ +FS + WF DIC W+ PVET P
Sbjct: 753 SDSNSHLWSMRKSRANLFRLSSVFSGLLGTGEWFQDICRWKKPVETTAIHIIFLVLVCSP 812
Query: 614 ELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAHLDELVKEFDTSDELDEEFDS 673
E+ILP + L LF++G+WNYR RPR PP +D +LS A N H +EL+EEFD+
Sbjct: 813 EMILPVMSLCLFMLGVWNYRLRPRQPPHMDTRLSFADNIH----------PEELNEEFDT 862
Query: 674 FP-TSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQAILCWRDLRATFIFLIFSFI 732
FP +S+ V+MRYERLRS+ + QTVVGD+A Q ERVQA+L WRD RAT IF++ +
Sbjct: 863 FPFSSQDPGIVKMRYERLRSIASRAQTVVGDIAGQGERVQALLSWRDPRATSIFMVLCLV 922
Query: 733 WAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPSKSDMLI 782
V YV PF+V +L GLY++R PRFR K P P+NFF+ P+K+D ++
Sbjct: 923 STVVLYVVPFKVFVLLAGLYIMRPPRFRGKTPPGPINFFRRLPAKTDCML 972
|
|
| TAIR|locus:2127103 AT4G00700 "AT4G00700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2072 (734.4 bits), Expect = 2.0e-214, P = 2.0e-214
Identities = 412/793 (51%), Positives = 555/793 (69%)
Query: 6 PEFLLVETSPPLAA-RL---RY-RGGDK-TASSYDLVEQMHYLFVNVVKARNLPVMDVSG 59
P+F + ETSP L R+ R RG ++ T+ +YDLVE+M +L+V VVKAR+LP D++G
Sbjct: 228 PDFSVKETSPLLGGGRIVGGRVVRGTERPTSGTYDLVEEMKFLYVRVVKARDLPNKDLTG 287
Query: 60 SLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVG 119
SLDPYV VK+GN+KG+ H KN +P WNQ+FAF+K+ LQSN +EV VKDKDI DDFVG
Sbjct: 288 SLDPYVVVKIGNFKGVTTHFNKNTDPEWNQVFAFAKDNLQSNFLEVMVKDKDILLDDFVG 347
Query: 120 RVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSD 179
V FDL EV RVPPDSPLAPQWYRLE+++G+K EIMLAVW GTQADE+F +A SD
Sbjct: 348 IVKFDLREVQSRVPPDSPLAPQWYRLENKRGEKKNY-EIMLAVWSGTQADEAFGDATFSD 406
Query: 180 AH-NISQTNL--ANTISKVYFSPKLYYLRVFVFEAQD-LVPSEEGRAPDAYVKIQLGN-L 234
+ + +N+ AN SKVY SP+L+YLRV + EAQD ++ S++ R P+ +V++++GN +
Sbjct: 407 SLVDSDSSNIISANLRSKVYHSPRLWYLRVQILEAQDVIIVSDKSRVPEVFVRVKVGNQM 466
Query: 235 VRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQ 294
+R P RS NP W +E FV +EPFED ++++VED P +DE +G+ I + ++ +
Sbjct: 467 LRTKFPQ--RSNNPKWGDEFTFVVAEPFEDNLVLSVEDHTAPNRDEPVGKAVILMNDIEK 524
Query: 295 RHETTKLPDPRWFNLHKPXXXXXXXXXXXXXXXXXXILIRFCLEAGYHVLDESTHFSSDL 354
R + D RW +L + + L+ GYHV DES + SSDL
Sbjct: 525 RIDDKPFHD-RWVHLEDSISDAMDVDKAKKVKFATRLRYKAVLDGGYHVFDESMYNSSDL 583
Query: 355 QPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLD 413
+PSS L K +IG+LELGIL+A M +++GK T D Y VAKYG+KW+R+RT++++++
Sbjct: 584 RPSSRKLWKPAIGVLELGILNANVFHSMKTREGKGTSDTYVVAKYGHKWVRSRTVINSMN 643
Query: 414 PRWNEQYTWEVYDPCTVITIGVFDNCH-VNGSKDDAIDQRIGKVRIRLSTLETDRLYTHY 472
P++NEQYTWEV+DP TV+TI VFDN H G + DQ IGKVRIRLSTL+T R+YTH
Sbjct: 644 PKYNEQYTWEVFDPATVLTICVFDNAHFAAGDGGNKRDQPIGKVRIRLSTLQTGRVYTHA 703
Query: 473 YPLLVLTPSGLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQ 532
YPLLVL P+GLKK GELHLA+RFTCT+ SM+ KY PLLPKMHY+ P+ + L+ Q
Sbjct: 704 YPLLVLQPTGLKKRGELHLAVRFTCTSVSSMLMKYTKPLLPKMHYILPLSTNQQEALKMQ 763
Query: 533 AMQIVAARLGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELFS---AICRWFND 589
A+ I+ RLGR+EPPLRREVV+Y+ D ++S+R+SKANF R +FS ++ +W
Sbjct: 764 AINIIIVRLGRSEPPLRREVVDYLTDWKSQLFSMRRSKANFNRFTTVFSGALSVWKWMEQ 823
Query: 590 ICTWRNPVETXXXXXXXXXXXXYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQA 649
+CTW+ PV T +PE+ILPT+FLY+ +IGMWNYRF+PR PP +DAKLS A
Sbjct: 824 VCTWKTPVTTALVHVLYTMLVTFPEMILPTVFLYMAVIGMWNYRFKPRFPPHMDAKLSYA 883
Query: 650 INAHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCE 709
N + SDELDEEFD+FPT R D V+MRY+RLRSV G++Q+V GD+A+Q E
Sbjct: 884 DNVN----------SDELDEEFDTFPTVRAPDIVKMRYDRLRSVAGKVQSVAGDIAAQGE 933
Query: 710 RVQAILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVN 769
RVQA+L WRD RAT IF+ F FI A+ Y+TPF++VA+L G Y +RHP+ R ++PS PVN
Sbjct: 934 RVQALLSWRDPRATAIFVTFCFIIAMALYITPFKLVALLSGYYFMRHPKLRHRIPSAPVN 993
Query: 770 FFKSFPSKSDMLI 782
FF+ P+ +D ++
Sbjct: 994 FFRRLPAMTDSML 1006
|
|
| TAIR|locus:2020280 AT1G04150 "AT1G04150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2008 (711.9 bits), Expect = 1.2e-207, P = 1.2e-207
Identities = 413/801 (51%), Positives = 549/801 (68%)
Query: 7 EFLLVETSPPLAARLRYRGG-----DKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSL 61
EF L ET P L GG DKT+S+YDLVEQM YL+VN+VKA++L V+ G +
Sbjct: 241 EFSLKETKPCLGGTSNGLGGLSSHKDKTSSTYDLVEQMQYLYVNIVKAKDLSVL---GEV 297
Query: 62 DPYVEVKLGNYKGIAKHLEKNQ-NPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGR 120
EVKLGNY+G+ K + N NP WNQ+F FSKER+QS++VE+ VK+ + KD++ GR
Sbjct: 298 --VSEVKLGNYRGVTKKVSSNSSNPEWNQVFVFSKERIQSSVVELFVKEGN--KDEYTGR 353
Query: 121 VTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDA 180
V FDL E+P RVPPDSPLAPQWY++E+R G + GE+M++VW GTQADE+F+EAWHS A
Sbjct: 354 VLFDLSEIPTRVPPDSPLAPQWYKIENRNGGR-GNGELMVSVWFGTQADEAFAEAWHSKA 412
Query: 181 HNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEG----RAPDAYVKIQLGN-LV 235
N+ L++ SKVY SPKL+YLR+ V EAQD+ ++G R P+ K+Q+G+ ++
Sbjct: 413 GNVHIEELSSIKSKVYLSPKLWYLRISVIEAQDVAIMDKGSSLMRFPELSAKLQVGSQIL 472
Query: 236 RVTRPSHV--RSV-NPVWNEEHMFVASEPFEDLIIVTVEDRIGPG-----KDEILGREFI 287
R S + +S NP WNE+ MFV +EPFED + V VEDR+ G D +GR I
Sbjct: 473 RTAIASAIPTKSFSNPYWNEDLMFVVAEPFEDCVTVVVEDRLNGGAIGGQNDVAVGRVQI 532
Query: 288 PVRNVPQRHETTKLPDPRWFNLHKPXXXXXXXXXXXXXXXXXXILIRFCLEAGYHVLDES 347
P+ V +R T L RWF+L I +R L+ GYHVLDE+
Sbjct: 533 PISAVERRTGDT-LVGSRWFSLDN---------GNNNNRFGSRIHLRLSLDGGYHVLDEA 582
Query: 348 THFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGK---LTDAYCVAKYGNKWIR 404
T ++SD++P++ L K +G+LE+GILSA LMPM +DGK + D+YCVAKYG KW+R
Sbjct: 583 TMYNSDVRPTAKELWKPQVGLLEIGILSATGLMPMKVRDGKCGGIADSYCVAKYGPKWVR 642
Query: 405 TRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLE 464
TRT++D+L P+WNEQYTWEVYDPCTV+T+GVFDN VN +++ D RIGKVRIRLSTLE
Sbjct: 643 TRTVVDSLCPKWNEQYTWEVYDPCTVVTVGVFDNARVN-ENNNSRDVRIGKVRIRLSTLE 701
Query: 465 TDRLYTHYYPLLVLTPSGLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVI 524
T R+YTH YPL+VL PSG+KK GELHLA+R +C V+M+ Y +PLLPKMHY QP+ V
Sbjct: 702 TGRVYTHSYPLIVLHPSGVKKTGELHLAVRLSCGNAVNMLHMYALPLLPKMHYTQPLGVH 761
Query: 525 LIDRLRHQAMQIVAARLGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELFS--- 581
+++RLR+Q + VAARL RAEPPL REVVEYMLD D+H+WS+R+SKANF R++ + S
Sbjct: 762 MLERLRYQTLNAVAARLSRAEPPLGREVVEYMLDHDFHVWSMRRSKANFFRLVNVISGLV 821
Query: 582 AICRWFNDICTWRNPVETXXXXXXXXXXXXYPELILPTIFLYLFLIGMWNYRFRPRHPPQ 641
A+ + + +W PV + +PEL+LP + LY +G+W +R R R+PP
Sbjct: 822 AVAKLVEVMRSWSKPVYSTVFVLAFLFMVLFPELLLPCLLLYTAAVGVWRFRRRSRYPPH 881
Query: 642 VDAKLSQAINAHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVV 701
+DA++S A E V F DELDEEFD+FPTSR D VRMRY+R+RS+ G++QTVV
Sbjct: 882 MDARISHA------ETV--FP--DELDEEFDTFPTSRGFDVVRMRYDRVRSIAGRVQTVV 931
Query: 702 GDLASQCERVQAILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRS 761
GD+ASQ ERVQA+L WRD RATF+FL+F + AV Y P ++ + GLY LR PRFR
Sbjct: 932 GDMASQGERVQALLSWRDPRATFLFLMFCLLAAVGFYTVPVKLTVAISGLYYLRPPRFRR 991
Query: 762 KMPSVPVNFFKSFPSKSDMLI 782
K+PS ++FF+ PS++D L+
Sbjct: 992 KLPSRGLSFFRRLPSRADSLL 1012
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| TAIR|locus:2119742 AT4G20080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1904 (675.3 bits), Expect = 1.3e-196, P = 1.3e-196
Identities = 388/788 (49%), Positives = 530/788 (67%)
Query: 7 EFLLVETSPPLAARLRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVE 66
+F L ETSP + GG+K SS+DLVE MH+L+ +V+AR LPV D +V
Sbjct: 14 DFSLKETSPNIGNG-GVNGGEKLTSSFDLVEAMHFLYARIVRARALPVND------SFVA 66
Query: 67 VKLGNYKGIAKH-LEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI-GKDDFVGRVTFD 124
VK+G+YKG K L N NP +++ FAF+K RLQ +++EV V+++D +DD VG+ FD
Sbjct: 67 VKIGSYKGRTKQILNSNPNPEFHETFAFTKTRLQGDILEVVVRNRDNPNEDDIVGKCKFD 126
Query: 125 LFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDAHNIS 184
+ E+P RVPPDSPLAPQWYRLEDR G KI GEIM++VWIGTQADE FSEAWHSD+ +++
Sbjct: 127 VAEIPTRVPPDSPLAPQWYRLEDRNGVKIG-GEIMVSVWIGTQADEVFSEAWHSDSASVT 185
Query: 185 QTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRA-PDAYVKIQLGNLVRVTRPSHV 243
N+ NT SKVY SP+L+YLRV V EAQDLV R P+ +K LGN+V +R S
Sbjct: 186 GENVVNTRSKVYLSPRLWYLRVNVIEAQDLVLLHPNRINPEILIKGFLGNVVVRSRISQT 245
Query: 244 RSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPD 303
+SV+PVWNE+ MFVA EPF+D +I++VED++GP ++E LGR I + V +R +P
Sbjct: 246 KSVSPVWNEDMMFVAVEPFDDSLILSVEDKVGP-REECLGRCEIKLSQVERRVLPGPVPS 304
Query: 304 PRWFNLHKPXXXXXXXXXXXXXXXXXXILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRK 363
W+N+ I +R L+ GYHVLDES +SSD + S+ L
Sbjct: 305 -LWYNVEH------IGETGEGRRFAGRIHLRVSLDGGYHVLDESIQYSSDYRASAKLLWT 357
Query: 364 GSIGILELGILSAKNLMPMTSKDGK-LTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTW 422
IG+LELG+L+A LMPM S+ G+ TDAYCVAKYG KW+RTRTI+DT DP+WNEQYTW
Sbjct: 358 PPIGVLELGVLNATGLMPMKSRGGRGTTDAYCVAKYGTKWVRTRTIVDTFDPKWNEQYTW 417
Query: 423 EVYDPCTVITIGVFDNCHVNGSKDD--AI-DQRIGKVRIRLSTLETDRLYTHYYPLLVLT 479
EVYDP TVITIGVFDN + G+ ++ I D RIGK+RIRLSTL T ++YTH YPL+VL
Sbjct: 418 EVYDPYTVITIGVFDNLKLFGAGNENRLINDSRIGKIRIRLSTLVTSKIYTHSYPLMVLK 477
Query: 480 PSGLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQIVAA 539
P G+KK GE+ LA+RFT T+ + M+ KY PLLP+MHY+ P+ + +D LRHQA I+
Sbjct: 478 PDGVKKMGEIQLAVRFTATSMMDMLQKYTEPLLPEMHYISPLSIYQLDSLRHQATHILCI 537
Query: 540 RLGRAEPPLRREVVEYMLDVDYHMWSLRKSKANFQRIMELFSA---ICRWFNDICTWRNP 596
LGR EP L R+VVEYMLDV ++WSLR+ +ANF+R++ F +WF++IC W++P
Sbjct: 538 NLGRNEPALGRDVVEYMLDVGSNIWSLRRGRANFERLVSFFDGWIDAWKWFDEICKWKSP 597
Query: 597 VETXXXXXXXXXXXXYPELILPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAHLDE 656
V + P+ + ++ LY F+ G++ + RPRHPP +D KLS+A +A
Sbjct: 598 VTSVLVHIVCLFVVFLPKYCVFSMLLYCFVFGLYRFGLRPRHPPHMDIKLSKADSA---- 653
Query: 657 LVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQAILC 716
DELDEEFD FP+S+ D ++ RY+RLR + G++ V+GDLA+Q ERV+++L
Sbjct: 654 ------LPDELDEEFDVFPSSKSGDVLKRRYDRLRGIAGRMMIVLGDLATQGERVKSLLS 707
Query: 717 WRDLRATFIFLIFSFI-WAVFSYVTPFQVVAVLIGLYMLRHPRFRS-KMPSVPVNFFKSF 774
WRD RAT +FL F F+ V +V+ +++ + Y++RHPR R +PS+P NFF+
Sbjct: 708 WRDPRATSLFLTFCFVSCGVICFVS-MKLLLTFLAFYVMRHPRVRVFDIPSIPQNFFRRL 766
Query: 775 PSKSDMLI 782
PS++D ++
Sbjct: 767 PSRADSIL 774
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00031831001 | SubName- Full=Chromosome chr18 scaffold_59, whole genome shotgun sequence; (979 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 782 | |||
| pfam08372 | 156 | pfam08372, PRT_C, Plant phosphoribosyltransferase | 5e-87 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 1e-67 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 2e-62 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 3e-62 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 9e-23 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 3e-22 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 3e-21 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 8e-18 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 3e-17 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 8e-17 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-16 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 3e-15 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 8e-15 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 9e-15 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 1e-14 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 1e-14 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 2e-14 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 2e-13 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 4e-13 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 7e-13 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 8e-13 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 1e-12 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-12 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 4e-12 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 4e-12 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 1e-11 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 2e-11 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 4e-11 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 4e-11 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 4e-11 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 7e-11 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 2e-10 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 2e-10 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 4e-10 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 5e-10 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 5e-10 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 6e-10 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 1e-09 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 2e-09 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 2e-09 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 5e-09 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 9e-09 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 2e-08 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 2e-08 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 3e-08 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 3e-08 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 4e-08 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 8e-08 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 8e-08 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 8e-08 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 3e-07 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 3e-07 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 4e-07 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 4e-07 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 4e-07 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 4e-07 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 6e-07 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 7e-07 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 8e-07 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 9e-07 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 9e-07 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 1e-06 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 2e-06 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 2e-06 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 2e-06 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 3e-06 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 3e-06 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 6e-06 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 7e-06 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 8e-06 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 1e-05 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 1e-05 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 1e-05 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 1e-05 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 2e-05 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 2e-05 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 3e-05 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 3e-05 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 3e-05 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 4e-05 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 4e-05 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 4e-05 | |
| cd08401 | 121 | cd08401, C2A_RasA2_RasA3, C2 domain first repeat p | 4e-05 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 4e-05 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 5e-05 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 7e-05 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 8e-05 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 9e-05 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 1e-04 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 1e-04 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 1e-04 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 1e-04 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 1e-04 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 2e-04 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 2e-04 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 2e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 2e-04 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 2e-04 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 4e-04 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 4e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 5e-04 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 5e-04 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 5e-04 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 6e-04 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 6e-04 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 7e-04 | |
| cd08382 | 123 | cd08382, C2_Smurf-like, C2 domain present in Smad | 7e-04 | |
| cd04048 | 120 | cd04048, C2A_Copine, C2 domain first repeat in Cop | 7e-04 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 9e-04 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 9e-04 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 0.001 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 0.001 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 0.001 | |
| cd08400 | 126 | cd08400, C2_Ras_p21A1, C2 domain present in RAS p2 | 0.001 | |
| cd08400 | 126 | cd08400, C2_Ras_p21A1, C2 domain present in RAS p2 | 0.001 | |
| cd04015 | 158 | cd04015, C2_plant_PLD, C2 domain present in plant | 0.001 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.002 | |
| cd08394 | 127 | cd08394, C2A_Munc13, C2 domain first repeat in Mun | 0.002 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 0.003 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 0.003 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 0.004 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 0.004 |
| >gnl|CDD|192017 pfam08372, PRT_C, Plant phosphoribosyltransferase C-terminal | Back alignment and domain information |
|---|
Score = 271 bits (695), Expect = 5e-87
Identities = 107/165 (64%), Positives = 130/165 (78%), Gaps = 10/165 (6%)
Query: 617 LPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAHLDELVKEFDTSDELDEEFDSFPT 676
LPTIFLYLF+IG+WNYRFRPRHPP +D +LS A AH DEL DEEFD+FPT
Sbjct: 1 LPTIFLYLFVIGLWNYRFRPRHPPHMDTRLSHADAAHPDEL----------DEEFDTFPT 50
Query: 677 SRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQAILCWRDLRATFIFLIFSFIWAVF 736
SRP D VRMRY+RLRSV G++QTVVGD+A+Q ER+QA+L WRD RAT IF++F + AV
Sbjct: 51 SRPPDVVRMRYDRLRSVAGRVQTVVGDIATQGERLQALLSWRDPRATAIFVLFCLVAAVV 110
Query: 737 SYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPSKSDML 781
YV PF+VVA+L G Y LRHPRFRS+MPSVP+NFF+ PS++D +
Sbjct: 111 LYVVPFKVVALLAGFYYLRHPRFRSRMPSVPLNFFRRLPSRTDSM 155
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This domain is found at the C-terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (pfam00168). Length = 156 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 219 bits (561), Expect = 1e-67
Identities = 89/154 (57%), Positives = 114/154 (74%), Gaps = 4/154 (2%)
Query: 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPF 262
YLRV V EAQDLVPS++ R P+ +VK QLGN V TRPS R+ NP WNEE MFVA+EPF
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 263 EDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEK 322
ED +I++VEDR+GP KDE LGR IP+ ++ +R + +P RWF+L +P +K
Sbjct: 61 EDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVP-SRWFSLERPG---GAMEQK 116
Query: 323 KKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQP 356
KK KF+S+I +R CL+ GYHVLDESTH+SSDL+P
Sbjct: 117 KKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 2e-62
Identities = 81/126 (64%), Positives = 96/126 (76%), Gaps = 1/126 (0%)
Query: 368 ILELGILSAKNLMPMTSKDGK-LTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYD 426
ILE+GIL A+ L + +KDG+ TDAYCVAKYG KW+RTRT+ D+ +PRWNEQYTW VYD
Sbjct: 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD 60
Query: 427 PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKN 486
PCTV+T+GVFDN + + D IGKVRIRLSTLE DR+Y H YPLL L PSG+KK
Sbjct: 61 PCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKM 120
Query: 487 GELHLA 492
GEL A
Sbjct: 121 GELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 3e-62
Identities = 84/126 (66%), Positives = 97/126 (76%), Gaps = 5/126 (3%)
Query: 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQS 100
YL+V VVKAR LP S DP VEVKLGNYKG K +E+ NP WNQ+FAFSK+RLQ
Sbjct: 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQG 56
Query: 101 NLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIML 160
+ +EV+V DKD KDDF+G V FDL EVP RVPPDSPLAPQWYRLED+KG ++ GE+ML
Sbjct: 57 STLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVG-GELML 115
Query: 161 AVWIGT 166
AVW GT
Sbjct: 116 AVWFGT 121
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 9e-23
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIA---KHLEKNQNPVWNQIFAFSKER 97
L V ++ ARNLP D G DPYV+V L K ++ NPVWN+ F F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 98 LQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPD 135
+ +E+ V DKD G+DDF+G+VT L ++ +
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE 99
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 3e-22
Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIA---KHLEKNQNPVWNQIFAFSKERL 98
L V V+ A+NLP D++G DPYV+V LG K K ++ NPVWN+ F F
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 99 QSNLVEVTVKDKD-IGKDDFVGRVT 122
+ + + V D D GKDDF+G VT
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 3e-21
Identities = 42/106 (39%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQS 100
L V V++ARNLP D++G DPYV+V LG K K ++ NPVWN+ F F +S
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 101 NLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145
+ + V V DKD KDDF+G V L E+ W L
Sbjct: 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEG----ELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 8e-18
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQS 100
+L V V++A L D+ G DP+ ++L N + + K NP WN+IF F + +
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHD 61
Query: 101 NLVEVTVKDKDIGKD-DFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIM 159
L EVTV D+D K +F+G+V L + + +WY L+D+K +G I+
Sbjct: 62 VL-EVTVYDEDKDKKPEFLGKVAIPLLSIKNGE-------RKWYALKDKKLRTRAKGSIL 113
Query: 160 L 160
L
Sbjct: 114 L 114
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 3e-17
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHV--RSVNPVWNEEHMFVASEP 261
LRV V A++L P + D YVK+ LG + T+ + V ++NPVWNE F + P
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 262 FEDLIIVTVEDRIGPGKDEILGR 284
+ + V D GKD+ +G
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGE 83
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 8e-17
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNL-VRVTRPSHVRSVNPVWNEEHMFVASEPF 262
LRV V EA++L + D YVK+ LG T+ ++NPVWNE F +P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVK-NTLNPVWNETFEFPVLDPE 59
Query: 263 EDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNL 309
D + V V D+ KD+ LG IP+ + + W L
Sbjct: 60 SDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEG----ELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-16
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHV--RSVNPVWNEEHMFVASE 260
L V + A++L P ++G D YVK+ L + + + V ++NPVWNE F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 261 PFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKL 301
P + + V D+ G+D+ +G+ IP+ ++ KL
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 3e-15
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLV 103
+ +V+ +NLP MD +G DPYV+ +LGN K +K K NP W + F QS ++
Sbjct: 4 IVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQIL 63
Query: 104 EVTVKDKDIG-KDDFVGRVTFDLFEVPH 130
E+ V DKD G KD+F+GR DL +P
Sbjct: 64 EIEVWDKDTGKKDEFIGRCEIDLSALPR 91
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 8e-15
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 369 LELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWI-RTRTILDTLDPRWNEQYTWEVYDP 427
L + ++ A+NL +D Y G K +T+ + +TL+P WNE + + V DP
Sbjct: 1 LRVTVIEARNLPAK--DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP 58
Query: 428 -CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRL-YTHYYPL 475
+T+ V+D SKDD +G+V I LS L + PL
Sbjct: 59 ESDTLTVEVWD--KDRFSKDDF----LGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 9e-15
Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFS---KERL 98
L V VV A++L D GS YVE+ K + K+ NPVWN+ F+ RL
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61
Query: 99 QSNLVEVTVKDK--DIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQG 156
+ ++EV V + + F+GRV P S Q Y LE R +G
Sbjct: 62 SNLVLEVYVYNDRRSGRRRSFLGRVRISG----TSFVPPSEAVVQRYPLEKRGLFSRVRG 117
Query: 157 EIMLAVWI 164
EI L V+I
Sbjct: 118 EIGLKVYI 125
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-14
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 369 LELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWI---RTRTILDTLDPRWNEQYTWEVY 425
L + ++SAKNL P +D Y G + +T+ + +TL+P WNE +T+EV
Sbjct: 1 LRVTVISAKNLPPKDLN--GKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVT 58
Query: 426 DP-CTVITIGVFDNCHVNGSKDDAIDQRIGKVR 457
P + I V+D KDD IG+V
Sbjct: 59 LPELAELRIEVYDYDRF--GKDD----FIGEVT 85
|
Length = 85 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-14
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 11/112 (9%)
Query: 42 LFVNVVKARNLPVMD------VSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSK 95
L ++V++A++L D V G DPYV V++G +K +++N NP WN+++
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVV 62
Query: 96 ERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147
+ + +E+ + D+D KDDF+GR++ DL V +W LED
Sbjct: 63 DEVPGQELEIELFDEDPDKDDFLGRLSIDLGSV-----EKKGFIDEWLPLED 109
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-14
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 23/123 (18%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEK--------NQNPVWNQIFAF 93
+ VN++KARNL MD++G+ DPYV+V L YK K +EK NPV+N+ F F
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPYVKVWL-MYKD--KRVEKKKTVIKKRTLNPVFNESFIF 73
Query: 94 S--KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVP--------PDSPLAPQW 142
+ ERL+ + +TV DKD + ++D +G++ + P P+A QW
Sbjct: 74 NIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVA-QW 132
Query: 143 YRL 145
+RL
Sbjct: 133 HRL 135
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-13
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 19/116 (16%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPVWNQIFAFS-- 94
L V V++AR+LP D +PYV+V L K K ++K NP WNQ F +S
Sbjct: 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNV 77
Query: 95 -KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPL--APQWYRLE 146
+E L+ +EVTV D D G++DF+G V DL D+ L P WY L+
Sbjct: 78 RRETLKERTLEVTVWDYDRDGENDFLGEVVIDL--------ADALLDDEPHWYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-13
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGIAKHLEKNQNPVWNQIFAFSKERL 98
L V V++A N+ D+ + D YVE+ L + K K ++ + NPVWN+ F F +
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ 61
Query: 99 QSNLVEVTVKDKDIGKDDFVGRVTFDL 125
N++E+TV D+D DD +G V FD+
Sbjct: 62 VKNVLELTVMDEDYVMDDHLGTVLFDV 88
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 7e-13
Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 44 VNVVKARNLPVMD-VSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQ---IFAFSKERLQ 99
V VV AR+LPVMD S D +VEVK G+ ++K+ NPVWN F E LQ
Sbjct: 3 VRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQ 62
Query: 100 SNLVEVTVKDKDI-GKDDFVGRVTFDL 125
+++ V D D +D +G+V DL
Sbjct: 63 DEPLQIRVMDHDTYSANDAIGKVYIDL 89
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 8e-13
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 12/92 (13%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEV-------KLGNYKGIAKHLEKNQNPVWNQIFAF- 93
L V V+KARNLP D G DPYV+V KL K K NPV+N+ F+F
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK--GTLNPVFNEAFSFD 73
Query: 94 -SKERLQSNLVEVTVKDKD-IGKDDFVGRVTF 123
E+L+ + +TV DKD +G+++ +G+V
Sbjct: 74 VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVL 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-12
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKERL 98
L +++ + RNL D G+ DPYV+ K G YK +K + KN NPVW++ F E +
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYK--SKTIYKNLNPVWDEKFTLPIEDV 59
Query: 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDL 125
L + V D D G DDF+G DL
Sbjct: 60 TQPLY-IKVFDYDRGLTDDFMGSAFVDL 86
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-12
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 368 ILELGILSAKNLMPMTSKDGKLTDAYCVAKYGN---KWIRTRTILDTLDPRWNEQYTWEV 424
L + I+SA+NL P G +D Y + +T+ + +TL+P WNE + +EV
Sbjct: 1 TLTVKIISARNLPPKDK--GGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEV 58
Query: 425 YDPCT-VITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLET 465
P + I V+D +DD IG+V I LS L
Sbjct: 59 PPPELAELEIEVYD--KDRFGRDD----FIGQVTIPLSDLLL 94
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-12
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 22/117 (18%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHL------------EKNQNPVWNQ 89
L V ++ ARNL +D +GS DP+V+V+L + +HL +K P++++
Sbjct: 18 LRVEILNARNLLPLDSNGSSDPFVKVEL-----LPRHLFPDVPTPKTQVKKKTLFPLFDE 72
Query: 90 IFAFS---KERLQSN-LVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQ 141
F F+ ++ L+ TVKD D +G +DF G L ++P S
Sbjct: 73 SFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVEDTSSAQGFG 129
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-12
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSN 101
L V VV+ NL V D + S DPYV + LGN K + ++KN NPVWN+ S +
Sbjct: 4 LKVRVVRGTNLAVRDFTSS-DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA- 61
Query: 102 LVEVTVKDKDI-GKDDFVGRVTFDL 125
+++ V DKD KDD +G DL
Sbjct: 62 PLKLEVFDKDTFSKDDSMGEAEIDL 86
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-11
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 24/135 (17%)
Query: 367 GILELGILSAKNLMPMTSKDGKL-------TDAYCVAKYGNKWIRTRTILDTLDPRWNEQ 419
G+L + ++ A++L+ +KD + +D Y + + G + +++ I + L+P+WNE
Sbjct: 1 GVLRIHVIEAQDLV---AKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEV 57
Query: 420 YTWEVYD-PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVL 478
Y V + P + I +FD +D D +G++ I L ++E + PL +
Sbjct: 58 YEAVVDEVPGQELEIELFD-------EDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV 110
Query: 479 TPSGLKKNGELHLAL 493
K+G LHL L
Sbjct: 111 ------KSGRLHLKL 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-11
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLG--NYKGIAKHLEKNQNPVWNQIFAFSKERLQSN 101
V VV+ARNL D +G DPY+++KLG ++ NPV+ ++F ++
Sbjct: 4 VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNS 63
Query: 102 LVEVTVKDKD-IGKDDFVGRVTFDL---FEVPHR 131
+++++V D D +G DD +G DL F HR
Sbjct: 64 ILKISVMDYDLLGSDDLIGETVIDLEDRFFSKHR 97
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-11
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKI---QLGNLVRVTRPSHVR-SVNPVWNEEHMF-VA 258
L V V +A++L PS+ D YVK+ Q G ++ + S + ++NPV+NE F V
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 259 SEPFEDL-IIVTVEDRIGPGKDEILGR 284
+E E++ +++TV D+ G++E++G+
Sbjct: 76 AEQLEEVSLVITVVDKDSVGRNEVIGQ 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-11
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Query: 42 LFVNVVKARNLPVMDVSGS--LDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQ 99
L V+VV+A++L D SG DPY + +G + + + NP WN F Q
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62
Query: 100 SNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED--RKGDKITQG 156
+ L+++ + DKD D++G L EV +W L+ + G
Sbjct: 63 NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQS--DKWITLKSTRPGKTSVVSG 120
Query: 157 EIML 160
EI L
Sbjct: 121 EIHL 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-11
Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKL-GNYKGIAK---HLEK-NQNPVWNQIFAFS 94
+ L V V+KAR+LP MDVSG DPYV+V L K I+K H++K NPV+N+ F F
Sbjct: 15 NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD 74
Query: 95 --KERLQSNLVEVTVKDKDIG-KDDFVGRVT 122
E L+ VE V D D K++ +GR+
Sbjct: 75 IPSEELEDISVEFLVLDSDRVTKNEVIGRLV 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 7e-11
Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 14/133 (10%)
Query: 366 IGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWI--RTRTILDTLDPRWNEQYTWE 423
IG+L + I SA+ L G + D Y N+ RT+ DT +P WNE
Sbjct: 1 IGVLAVTIKSARGLKGSDIIGGTV-DPYVTFSISNRRELARTKVKKDTSNPVWNETKYIL 59
Query: 424 VYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTH-YYPLLVLTPSG 482
V + + V+D N + D+ IG LS+L + + LL
Sbjct: 60 VNSLTEPLNLTVYDF---NDKRK---DKLIGTAEFDLSSLLQNPEQENLTKNLL----RN 109
Query: 483 LKKNGELHLALRF 495
K GEL+ LRF
Sbjct: 110 GKPVGELNYDLRF 122
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-10
Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 21/118 (17%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL-------GNYK-GIAKHLEKNQNPVWNQIFAF 93
L V V K RNLP D S DPYV + L K + K N NPV+++ F F
Sbjct: 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKK---DNLNPVFDETFEF 74
Query: 94 --SKERLQSNLVEVTVKDK---DIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146
S E L+ ++V VK+ + +G+V DL ++ S QWY L
Sbjct: 75 PVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL-----DLSKGFTQWYDLT 127
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-10
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 13/97 (13%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKH-LE-----KNQNPVWNQIFAF-- 93
L + ++KA LP D SG+ DP+V++ L K KH LE KN NP WN+ F F
Sbjct: 18 LTLKILKAVELPAKDFSGTSDPFVKIYLLPDK---KHKLETKVKRKNLNPHWNETFLFEG 74
Query: 94 -SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEV 128
E+LQ ++ + V D D ++D +G V+ L +V
Sbjct: 75 FPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKV 111
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 4e-10
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 15/116 (12%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPVWNQIFAF--- 93
L V V +A+NL MD +G DPYV++KL K K ++K NPVWN+ F F
Sbjct: 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74
Query: 94 SKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149
++ + +EV D+ ++DF+G ++F + E+ ++P D WY+L +++
Sbjct: 75 PADKDRRLSIEVWDWDR-TTRNDFMGSLSFGVSEL-IKMPVDG-----WYKLLNQE 123
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 5e-10
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQ------NPVWNQIFAF-- 93
L V +++ NL MD +G DP+V++ L G K K Q NP +N+ F +
Sbjct: 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAG-KKSKHKTQVKKKTLNPEFNEEFFYDI 73
Query: 94 SKERLQSNLVEVTVKDKDIGK-DDFVGRVT 122
L +E+TV DKDIGK +D++G +
Sbjct: 74 KHSDLAKKTLEITVWDKDIGKSNDYIGGLQ 103
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-10
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 33/129 (25%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQ--------NPVWNQIFAF 93
L V +++A+NL MDV G DPYV++ L + K L+K + NP +N+ F+F
Sbjct: 17 LTVVILEAKNLKKMDVGGLSDPYVKIHL--MQN-GKRLKKKKTTIKKRTLNPYYNESFSF 73
Query: 94 --SKERLQSNLVEVTVKDKD-IGKDDFVGRVTF-------------DLFEVPHRVPPDSP 137
E++Q + VTV D D IGK+D +G+V D+ P R P
Sbjct: 74 EVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRR-----P 128
Query: 138 LAPQWYRLE 146
+A QW+ L+
Sbjct: 129 IA-QWHTLQ 136
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 6e-10
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL--GNYKG---IAKHLEKNQNPV 86
YD L +++A+ L MD +G DPYV++ L G K K + K +NP
Sbjct: 9 LYD--PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPE 66
Query: 87 WNQIFAF---SKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEV-PHRV 132
+N+ + ++E +Q + + V D+D +DF+G L ++ P++
Sbjct: 67 FNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQT 116
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 366 IGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVY 425
+G+L++ ++ NL +D +D Y V GN+ ++TR I L+P WNE+ T V
Sbjct: 1 LGLLKVRVVRGTNL---AVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVP 57
Query: 426 DPCTVITIGVFDNCHVNGSKDD 447
+P + + VFD SKDD
Sbjct: 58 NPMAPLKLEVFD--KDTFSKDD 77
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-09
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKERL 98
L V+V+ A NLP D +G DP+V+ L +K K ++K NPVWN+ F
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFK--TKTIKKTLNPVWNESFEVPVPSR 58
Query: 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEV 128
+++V V D D G KDD +G DL ++
Sbjct: 59 VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDL 89
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-09
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLE-----KNQNPVWNQIFAFS-- 94
L V +++A +LP MD+ G+ DPYV+V L K K E K NPV+N+ F F
Sbjct: 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFTFKVP 75
Query: 95 KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEV 128
L + + +V D D K D +G V L V
Sbjct: 76 YSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 5e-09
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 22/135 (16%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAF-------S 94
L + +AR+L D SG DP+ V N + +++ +P W+Q F S
Sbjct: 3 LRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGS 62
Query: 95 KERLQSN--LVEVTVKDKDI-GKDDFVGRVTFDLFEVPHRV----PPDSPLAPQWYRLED 147
E + N LV V + D+D GKD+F+GR P V D P QW+ +
Sbjct: 63 PEEIAQNPPLVVVELFDQDSVGKDEFLGRS----VAKP-LVKLDLEEDFPPKLQWFPI-- 115
Query: 148 RKGDKITQGEIMLAV 162
KG + + GE++ A
Sbjct: 116 YKGGQ-SAGELLAAF 129
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 9e-09
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 24/133 (18%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAF----SKERLQ 99
+ VV A+ L D +G+ DPYV V++G K K + +N NPVWN+ F F S +R++
Sbjct: 5 ITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIK 64
Query: 100 SNLVEVTVKDKDIGK----------DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149
V V +D DI DDF+G+ + V S WY LE R
Sbjct: 65 ---VRVWDEDDDIKSRLKQKFTRESDDFLGQTIIE-------VRTLSGEMDVWYNLEKRT 114
Query: 150 GDKITQGEIMLAV 162
G I L +
Sbjct: 115 DKSAVSGAIRLHI 127
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 14/111 (12%)
Query: 367 GILELGILSAKNLMPMTSKD--GKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEV 424
G L++ ++ A L + D GK +D +CV + N ++T TI TL+P WN+ +T+ +
Sbjct: 1 GFLQVKVIRASGLA---AADIGGK-SDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPI 56
Query: 425 YDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475
D V+ + V+D KD + +GKV I L +++ +Y L
Sbjct: 57 KDIHDVLEVTVYDE-----DKDKKPE-FLGKVAIPLLSIKNGE--RKWYAL 99
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-08
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSN 101
L +V++AR+L D +G+ DP+V V ++K+ P WN++F F +
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADS 61
Query: 102 LVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145
+ V V D D + K+DF+G+V F + + + W+RL
Sbjct: 62 PLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEG-----WFRL 101
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-08
Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEK-NQNPVWNQIFAFSKERLQ 99
L V V+KARNLP DPY +++G K + Q+P W++ F +
Sbjct: 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK 61
Query: 100 SNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIM 159
+++V V D D K D +G DL D WY L KG GE+
Sbjct: 62 KPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFD-----DWYEL-TLKGR--YAGEVY 113
Query: 160 L 160
L
Sbjct: 114 L 114
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-08
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 205 RVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMF-----VAS 259
+V V +A+ L+ + DAYV IQLG T ++ +PVW EE F ++
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKE-KTTSPVWKEECSFELPGLLSG 60
Query: 260 EPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLH-KPSLSAEE 318
+ +TV R G D+ LG+ IP+ ++ E RWF L KP +E
Sbjct: 61 NGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDL---DEDKGRRRTRWFKLESKPGKDDKE 117
Query: 319 GAE 321
E
Sbjct: 118 RGE 120
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 4e-08
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 20 RLRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLG---NYKGIA 76
++ Y ++VE YL + + NLP D +G DP+V++ L YK
Sbjct: 1020 QVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYK--T 1077
Query: 77 KHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVP 133
K ++K NPVWN+ F +++ + V D D G K+D +G DL ++
Sbjct: 1078 KVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT 1135
|
Length = 1227 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 8e-08
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 210 EAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEE---HMFV-ASEPFEDL 265
E ++L P ++ D YVK +LGN ++ +++NP W E+ H+F S+ E
Sbjct: 8 EGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVC-SKTLNPQWLEQFDLHLFDDQSQILE-- 64
Query: 266 IIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKL 301
+ V D+ KDE +GR I + +P R +T L
Sbjct: 65 --IEVWDKDTGKKDEFIGRCEIDLSALP-REQTHSL 97
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 8e-08
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 17/118 (14%)
Query: 374 LSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVY-DPCTVIT 432
+ KNL PM D L+D Y + GN+ +++ TL+P+W EQ+ ++ D ++
Sbjct: 7 VEGKNLPPM--DDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILE 64
Query: 433 IGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL--------LVLTPSG 482
I V+D + K D IG+ I LS L ++ ++ L L+LT +G
Sbjct: 65 IEVWDK---DTGKKDEF---IGRCEIDLSALPREQTHSLELELEDGEGSLLLLLTLTG 116
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 8e-08
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSN 101
L V +V+ R+L + +G DPY EV +G+ + K + NP WN F + L+ +
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQD 76
Query: 102 LVEVTVKDKD-IGKDDFVGR 120
++ +TV D+D DDF+GR
Sbjct: 77 VLCITVFDRDFFSPDDFLGR 96
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-07
Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAK-HLEKNQNPVWNQIFAF-SKERL 98
YL V V++A++L D + + +V+ +LGN + +N NP WN+ F + E
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 99 QSNLVEVTVKD-KDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147
+ +L+ ++V+D KD+ +GR L ++ RV D P+ +W+ LE
Sbjct: 61 EDHLI-LSVEDRVGPNKDEPLGRAVIPLNDIERRV-DDRPVPSRWFSLER 108
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Query: 40 HYLFVNVVKARNLPVMDV-SGSLDPYVEVKLGNYKGIAKH------LEKNQNPVWNQIFA 92
L VN+++ R+LP MD SG+ DPYV+++L K +H L K +NPV+++ F
Sbjct: 16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK---EHKVKTRVLRKTRNPVYDETFT 72
Query: 93 F---SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVP 129
F +LQ + V D +DD +G V L
Sbjct: 73 FYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGAD 113
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-07
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 373 ILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVI 431
++ A++LMP KDG+ + AY + + RTRT L+P WNE+ + V DP +
Sbjct: 6 VVDAQDLMP---KDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLS 62
Query: 432 TIGVFDNCHVNGSKDDAIDQR---IGKVRIRLSTL--ETDRLYTHYYPL 475
V D +R +G+VRI ++ ++ + YPL
Sbjct: 63 N----LVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVV-QRYPL 106
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-07
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 10/126 (7%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNL- 102
V V++AR L SG+ D YV ++LG K EK +PVW + +F L S
Sbjct: 3 VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62
Query: 103 ----VEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG-DKITQG 156
+++TV ++ +G D F+G+V+ L ++ +W++LE + G D +G
Sbjct: 63 NRATLQLTVMHRNLLGLDKFLGQVSIPLNDL-DED--KGRRRTRWFKLESKPGKDDKERG 119
Query: 157 EIMLAV 162
EI + +
Sbjct: 120 EIEVDI 125
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-07
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN--YK-GIAKHLEKNQNPVWNQIFAFSKERL 98
L V ++ A+ L D G +DPYV ++ K +AK +NP WN+ F F+ E
Sbjct: 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAK--GDGRNPEWNEKFKFTVEYP 60
Query: 99 QSNLV-EVTVK--DKD-IGKDDFVGRVTFDLFEV 128
++ ++ DKD DDF+G T L +
Sbjct: 61 GWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-07
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAK--HLEKNQNPVWNQIFAFSKERLQ 99
L++ +V+ +NLP D++GS DPY VK+ N + I + + K NP W + + L
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN-EVIIRTATVWKTLNPFWGEEYTV---HLP 57
Query: 100 SNLVEVT--VKDKD-IGKDDFVGRVTFDL-FEVPHRVPPDSPLAPQWYRLEDRKGDKITQ 155
V+ V D+D + +DD +G+V+ H D W L + D+ Q
Sbjct: 58 PGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDG-----WMNLTEVDPDEEVQ 112
Query: 156 GEIMLAV 162
GEI L +
Sbjct: 113 GEIHLEL 119
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 6e-07
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 387 GKLTDAYCVAKYGNKWI-RTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSK 445
G +D Y KYG K + +++TI L+P W+E++T + D + I VFD + G
Sbjct: 18 GGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFD--YDRGLT 75
Query: 446 DDAIDQRIGKVRIRLSTLETDR 467
DD +G + LSTLE ++
Sbjct: 76 DDF----MGSAFVDLSTLELNK 93
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 46 VVK-ARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPVWNQIF---AFSKE 96
VK A+NLP + G+ D +V+ L K ++K+ NPVWN F S E
Sbjct: 32 WVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPE 91
Query: 97 RLQSNLVEVTVKDKD-IGKDDFVG 119
L +E+TV D D + +DF+G
Sbjct: 92 DLSQACLELTVWDHDKLSSNDFLG 115
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 8e-07
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 44 VNVVKARNLPVMD-VSGSLDPYVEVKLGNYKGIA--KHLEKNQNPVWNQIFAFSKERLQS 100
V + AR L D + G++DPYV + N + +A K + NPVWN+ +K L +
Sbjct: 6 VTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNE----TKYILVN 61
Query: 101 NLVE---VTVKDK-DIGKDDFVGRVTFDL 125
+L E +TV D D KD +G FDL
Sbjct: 62 SLTEPLNLTVYDFNDKRKDKLIGTAEFDL 90
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 9e-07
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLVRVTRPSHV--RSVNPVWNEEHMFVAS 259
L V V +A+DL P ++G + YVK+ L + R + +++NP WN+ + ++
Sbjct: 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEY-SN 76
Query: 260 EPFEDLII----VTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPD-PRWFNLH 310
E L VTV D G+++ LG I + L D P W+ L
Sbjct: 77 VRRETLKERTLEVTVWDYDRDGENDFLGEVVIDL-------ADALLDDEPHWYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 9e-07
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAF--SKERLQ 99
LFV + A+NLP+ + PYVE+ +G +K E+ NPVW + F F Q
Sbjct: 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQ 61
Query: 100 SNLVEVTVKDKDIGKDDFVGRVTFDLFEV 128
+E+ VKD GK +G +T L E+
Sbjct: 62 E--LEIEVKDDKTGKS--LGSLTLPLSEL 86
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 26/127 (20%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGIAKHLE---KNQNPVWNQIFAF---- 93
L V V++ R+L + +G+ DP+ V L K K + K NP +++ F F
Sbjct: 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 94 -----------SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQ 141
+E L+ + + V + + DDF+G V L + +
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQA----- 114
Query: 142 WYRLEDR 148
WY L+ R
Sbjct: 115 WYFLQPR 121
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 367 GILELGILSAKNLMPM-TSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVY 425
G+L + ++ AK+L S GK +D Y + G + +T+TI +TL+P+WN + ++
Sbjct: 1 GVLRVHVVEAKDLAAKDRSGKGK-SDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIF 59
Query: 426 DP-CTVITIGVFDNCHVNGSKDD 447
++ + ++D + D
Sbjct: 60 SAQNQLLKLILWD--KDRFAGKD 80
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 360 SLRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQ 419
S R IG L + I+ ++L P + +GK +D YC G++ +T+ + DTL+P+WN
Sbjct: 8 SQRASGIGRLMVVIVEGRDLKP-CNSNGK-SDPYCEVSMGSQEHKTKVVSDTLNPKWNSS 65
Query: 420 YTWEVYD-PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDR 467
+ V D V+ I VFD S DD +G+ IR++ + +
Sbjct: 66 MQFFVKDLEQDVLCITVFDRDFF--SPDDF----LGRTEIRVADILKET 108
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTR--PSHVRSVNPVWNEEHMFVASEP 261
L V + E +DL P D Y ++ +G+ T+ ++NP WN F +
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSD---TLNPKWNSSMQFFVKDL 73
Query: 262 FEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLH 310
+D++ +TV DR D+ LGR I V ++ + + +K P + LH
Sbjct: 74 EQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH 122
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 12/134 (8%)
Query: 204 LRVFVFEAQDLVPSEEGRA--PDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEP 261
LRV V EA+DL + D Y + +G T+ ++NP WN F
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIP-NTLNPKWNYWCEFPIFSA 61
Query: 262 FEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAE 321
L+ + + D+ + LG I + V + +W L S G
Sbjct: 62 QNQLLKLILWDKDRFAGKDYLGEFDIALEEV--FADGKTGQSDKWITLK----STRPGKT 115
Query: 322 KKKEKFSSKILIRF 335
S +I ++F
Sbjct: 116 SVV---SGEIHLQF 126
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 41 YLF-VNVVKARNLPVMDVSGSLDPYVE-VKLGNYKGIAKH--LEKNQNPVWNQIFAFSKE 96
+LF + +V+A NL +G DPYV V + IAK + NP W++ F
Sbjct: 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60
Query: 97 RLQSNLVEVTVKDKD-IGKDDFVGRVTFDL 125
+ + TV D+ +GK D GR + L
Sbjct: 61 AGEPLWISATVWDRSFVGKHDLCGRASLKL 90
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 6e-06
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 14/110 (12%)
Query: 205 RVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHV-RSVNPVWNEEHMFVASEPFE 263
RV+V A++L P + D Y+KI+LG R +++ ++NPV+ + A+ P
Sbjct: 3 RVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGN 62
Query: 264 DLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPS 313
++ ++V D G D+++G I + + R+F+ H+ +
Sbjct: 63 SILKISVMDYDLLGSDDLIGETVIDLED-------------RFFSKHRAT 99
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 7e-06
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 19/128 (14%)
Query: 369 LELGILSAKNLMPMTSKDGKLTDAYCVAKY-GNKWIRTRTILDTLDPRWNEQYTWEVYDP 427
L + ++SA+NL +GK +D + G K +T+TI TL+P WNE + V P
Sbjct: 1 LTVDVISAENLPSADR-NGK-SDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPV--P 56
Query: 428 C---TVITIGVFD-NCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGL 483
V+ + V+D + G KDD +G I LS LE + P L G
Sbjct: 57 SRVRAVLKVEVYDWD---RGGKDDL----LGSAYIDLSDLEPEETTELTLP---LDGQGG 106
Query: 484 KKNGELHL 491
K G + L
Sbjct: 107 GKLGAVFL 114
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-06
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL-GNLVRVT-RPSHV--RSVNPVWNEEHMFVAS 259
L V V A++L P +G PD YVK L + + T R + V ++ NP +NE M V
Sbjct: 15 LFVMVMHAKNL-PLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNE--MLVYD 71
Query: 260 E-PFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNL 309
P EDL + V+V ++E LG IP++ + ET K W+ L
Sbjct: 72 GLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEK-----WYPL 121
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPF 262
+L+V V A L ++ G D + ++L N T + +++NP WN+ F +
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIY-KTLNPEWNKIFTF-PIKDI 59
Query: 263 EDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLS 315
D++ VTV D K E LG+ IP+ ++ + +W+ L L
Sbjct: 60 HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNG-------ERKWYALKDKKLR 105
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-----KGIAKHLEKNQNPVWNQIFA---F 93
LFV V+ A+NLP++D DPYV+ L K K + K +NP +N++
Sbjct: 15 LFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGL 73
Query: 94 SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146
E LQ +++V+V D + +++F+G V L ++ + +WY L
Sbjct: 74 PVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETE-----KWYPLG 122
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 13/124 (10%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSN 101
L + +++A+NLP DPY V L + + NP W + F F
Sbjct: 2 LRLRILEAKNLPSKGTR---DPYCTVSLDQVEVARTKTVEKLNPFWGEEFVFDDPPPDVT 58
Query: 102 LVEVT--VKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEI 158
++ KDK +D +G+V ++ +W+ L D QG +
Sbjct: 59 FFTLSFYNKDKRSKDRDIVIGKVALSKLDLGQGK-------DEWFPLTPVDPDSEVQGSV 111
Query: 159 MLAV 162
L
Sbjct: 112 RLRA 115
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Query: 33 YDLVEQMHYLFVNVVKARNLPVMDVSGSL-DPYVEVKL----GNYKGIAKHLEKNQNPVW 87
YDL E+ L V+++KARNLP + DP+V+V L +K K QNP +
Sbjct: 9 YDLEEE--QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQ-SKVKRKTQNPNF 65
Query: 88 NQIFAF--SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEV 128
++ F F S + LQ + ++V D D + +G V F L ++
Sbjct: 66 DETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDL 109
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
Query: 204 LRVFVFEAQDLVPSEEGRAP------DAYVKIQLGNLVRVTRPSHVR-SVNPVWNEEH-M 255
LR+ V EAQDLV ++ D YV +++G + + ++ ++NP WNE +
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA--QTFKSKVIKENLNPKWNEVYEA 60
Query: 256 FVASEPFEDLII-VTVEDRIGPGKDEILGREFIPVRNV 292
V P ++L I + ED P KD+ LGR I + +V
Sbjct: 61 VVDEVPGQELEIELFDED---PDKDDFLGRLSIDLGSV 95
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVR---VTRPSHVRSVNPVWNEEHMF--VA 258
LR+ + +A DL E D YV++ + +V+ VT + +NPVW+ E ++ V
Sbjct: 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNT---LNPVWD-EVLYVPVT 58
Query: 259 SEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTK 300
S I + V D GKD LG I V ++ +++E K
Sbjct: 59 SP--NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKKNEDGK 98
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 16/112 (14%)
Query: 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHV-RSVNPVWNEEHMFVASEP 261
YL V V +A+ L P+ D V+++LGN T+ + R+ NP WN+ F
Sbjct: 1 YLYVRVVKARGL-PANSN---DPVVEVKLGNYKGSTK--AIERTSNPEWNQVFAFSKDRL 54
Query: 262 FEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPD----PRWFNL 309
+ V+V D+ KD+ LG + VP R PD P+W+ L
Sbjct: 55 QGSTLEVSVWDK-DKAKDDFLGGVCFDLSEVPTR----VPPDSPLAPQWYRL 101
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTR------PSHVRSVNPVWNEEHMFV 257
+ V + +A++L + D YVK+ L + + R R++NPV+NE +F
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPYVKVWL--MYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74
Query: 258 ASEPFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVP--QRHETTKLPDPR 305
P E L +I+TV D+ +++++G+ ++ ++ +H L PR
Sbjct: 75 I--PLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPR 126
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-05
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 42 LFVNVVKARNLPVM--DVSGSLDPYVEVKL--GNYKGIAKH---LEKN--QNPVWNQIFA 92
L + ++ + LP D +DPYVEV++ AK + KN NPVWN+ F
Sbjct: 4 LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63
Query: 93 FSKERLQSNLVEVTVKDKDIGKDDFVG 119
F + + V D+D G DDF+G
Sbjct: 64 FDVTVPELAFLRFVVYDEDSGDDDFLG 90
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-05
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 350 FSSDLQPSSMSL--RKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWI-RTR 406
S + S + +IG++E+ I SA+ L S D Y + ++ I +TR
Sbjct: 417 NSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTR 476
Query: 407 TILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETD 466
+TL+P WNE + + + + ++D D+ +G ++ L+ L +
Sbjct: 477 VKKNTLNPVWNETFYILLNSFTDPLNLSLYD------FNSFKSDKVVGSTQLDLALLHQN 530
Query: 467 RLYTHYYPLLVLTPSGLKKNGELHLALRF 495
+ + L K G L LRF
Sbjct: 531 PVKKN---ELYEFLRNTKNVGRLTYDLRF 556
|
Length = 1227 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-05
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 375 SAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCT-VITI 433
SAKNL P+ +K K Y G +++ T +P W E +T+ V +P + I
Sbjct: 8 SAKNL-PL-AKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEI 65
Query: 434 GVFDNCHVNGSKDDAIDQRIGKVRIRLSTL--ETDRLYTHYYPL 475
V D+ + +G + + LS L E D +PL
Sbjct: 66 EVKDDKT---------GKSLGSLTLPLSELLKEPDLTLDQPFPL 100
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-05
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAF----SKERLQ 99
V V++AR L G++DP V+V++G K + P +N+ F F S + L
Sbjct: 8 VRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELF 63
Query: 100 SNLVEVTVKDKD-IGKDDFVGRVTFDL 125
+++++V D + D +G D+
Sbjct: 64 DKIIKISVYDSRSLRSDTLIGSFKLDV 90
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 369 LELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWI-RTRTILDTLDPRWNEQYTWEVYDP 427
L++ I AKNL P S K+ D YC + + RT+T+ +L P + E + +E+
Sbjct: 2 LKIKIGEAKNLPP-RSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT 60
Query: 428 CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNG 487
++ ++D + D IGKV I+ L ++PL + + G
Sbjct: 61 FRHLSFYIYDRDVLRR------DSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADS-EVQG 113
Query: 488 ELHLALRF 495
++HL LR
Sbjct: 114 KVHLELRL 121
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 38/133 (28%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPY------------VEVKLGNYKGIAKH----------- 78
L V V++A+ L DV+G DPY K K K
Sbjct: 30 LKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKS 89
Query: 79 ------LEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRV 132
+ NPVWN+ F F E + ++ + + + D D DDF+G V L ++P
Sbjct: 90 IKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLP--- 143
Query: 133 PPDSPLAPQWYRL 145
S W++L
Sbjct: 144 ---SCGLDSWFKL 153
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFE 263
L V V +AQDL+P + + AYV++ + TR + +NPVWNE+ +F S+P
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKP-KDLNPVWNEKLVFNVSDP-S 59
Query: 264 DL------IIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLS 315
L + V + R G + LGR I + E + + L K L
Sbjct: 60 RLSNLVLEVYVYNDRRSGRRRS-FLGRVRISGTSFVPPSEAV----VQRYPLEKRGLF 112
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-05
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHV--RSVNPVWNEEHMFVASEP 261
L V++ A++L ++ + P YV++ +G T+ S V R+ NPVW E F+ P
Sbjct: 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK---TTQKSKVKERTNNPVWEEGFTFLVRNP 58
Query: 262 FEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNL 309
+ + V+D + LG +P+ + + L + F L
Sbjct: 59 ENQELEIEVKDD---KTGKSLGSLTLPLSELLKE---PDLTLDQPFPL 100
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 8e-05
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLV 103
V+V A L D G DPYV +K + + +P ++ F +++ +S +
Sbjct: 7 VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIK 66
Query: 104 EVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK 152
+ V + ++ D+F+G+ T P+ + L R D
Sbjct: 67 -IQVWNSNLLCDEFLGQATLS-------ADPNDSQTLRTLPLRKRGRDA 107
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 9e-05
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL-GNYKGIAKH---LEKNQ-NPVWNQ--IFAFS 94
L + ++KARNL MD++G DPYV+V L + + K ++KN NP +N+ +F
Sbjct: 16 LTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVP 75
Query: 95 KERLQSNLVEVTVKDKD-IGKDDFVG 119
E + + + + V D D +G ++ +G
Sbjct: 76 PENVDNVSLIIAVVDYDRVGHNELIG 101
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 224 DAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILG 283
D YV + LGN TR +++NPVWNEE P + + V D+ KD+ +G
Sbjct: 23 DPYVVLTLGNQKVKTRVIK-KNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDSMG 80
Query: 284 REFI---PVRNVPQRHETTKLPDP 304
I P+ + P
Sbjct: 81 EAEIDLEPLVEAAKLDHLRDTPGG 104
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL---GNLVRVTRPS-HVRSVNPVWNEEHMF-VA 258
L V + EA++L + G D YVKI L G ++ + + R++NP +NE F V
Sbjct: 17 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVP 76
Query: 259 SEPFEDL-IIVTVEDRIGPGKDEILGREFIPVR--NVPQRHETTKLPDPR-----WFNLH 310
E + + +IVTV D GK++ +G+ + RH + L PR W L
Sbjct: 77 FEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRRPIAQWHTLQ 136
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 22/111 (19%)
Query: 369 LELGILSAKNLMPMTSKDGKLTDAYC------VAKYGNKWIRTRTILDTLDPRWNEQYTW 422
L I+ AK L M + L+D Y A +RT+T+ T +P +NE T+
Sbjct: 17 LHCTIIRAKGLKAMDA--NGLSDPYVKLNLLPGASKAT-KLRTKTVHKTRNPEFNETLTY 73
Query: 423 EVYDPCTV----ITIGVFDNCHVNGSKDDAIDQR-IGKVRIRLSTLETDRL 468
+ + + V D +D +G+ RI L L+ ++
Sbjct: 74 YGITEEDIQRKTLRLLVLD--------EDRFGNDFLGETRIPLKKLKPNQT 116
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 13/120 (10%)
Query: 202 YYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNE----EHMFV 257
+ LR ++++A+DL+ +++ D + ++ N + T +++P W++ + + +
Sbjct: 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIK-ETLSPTWDQTLIFDEVEL 59
Query: 258 ASEPFEDL------IIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHK 311
P E++ ++V + D+ GKDE LGR V E P +WF ++K
Sbjct: 60 YGSP-EEIAQNPPLVVVELFDQDSVGKDEFLGRSVA-KPLVKLDLEEDFPPKLQWFPIYK 117
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI-------AKHLEKNQNPVWNQIFAFS 94
L V V+ +L D+ G+ DPYV++ L + G K ++K NP WN+ F F
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61
Query: 95 KERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVP-PDSPLAPQWYRLEDR 148
+ L+ + + +DDF+G+V L +P P + + Y L R
Sbjct: 62 VNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR 116
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 11/99 (11%)
Query: 369 LELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWN-EQYTWEVYDP 427
L++ +++A++L P+ + LTDA+ K+G+ +T + +L+P WN E + +EV D
Sbjct: 1 LKVRVVAARDL-PVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDE 59
Query: 428 C---TVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTL 463
+ I V D H S +DA IGKV I L+ L
Sbjct: 60 ELQDEPLQIRVMD--HDTYSANDA----IGKVYIDLNPL 92
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 21/129 (16%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFE 263
+ + V AQ L+ ++ D YV +Q+G + T+ +++NPVWNE+ F
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIP-QNLNPVWNEKFHFECHNS-S 60
Query: 264 DLIIVTVED-----------RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312
D I V V D + D+ LG+ I VR + + W+NL K
Sbjct: 61 DRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMDV-------WYNLEKR 113
Query: 313 S-LSAEEGA 320
+ SA GA
Sbjct: 114 TDKSAVSGA 122
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 11/117 (9%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHV--RSVNPVWNEEHMFVASEP 261
LR V EA+DL P + D +V++ T + V +S P WNE F E
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQ---TLETSVVKKSCYPRWNEVFEFELMEG 58
Query: 262 FEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEE 318
+ + V V D K++ LG+ ++ + Q + WF L P AEE
Sbjct: 59 ADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQ-----AKQEEGWFRL-LPDPRAEE 109
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Query: 192 ISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWN 251
SK + + +RV V +A DL G D Y + + NLV+ ++NP+WN
Sbjct: 701 SSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWN 760
Query: 252 EEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKL 301
E ++V + + D G D LG I V NV ++ E + L
Sbjct: 761 -EILYVPVTSKNQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSAL 809
|
Length = 1227 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 26/97 (26%)
Query: 44 VNVVKARNLPVMDVS--------------GSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQ 89
+ +A +LP MD +DPYVEV K + + NP WN+
Sbjct: 4 FKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNE 63
Query: 90 IFAFSK------ERLQSNLVEVTVKDKD-IGKDDFVG 119
F + ER++ + ++D D +G DD +G
Sbjct: 64 QIVFPEMFPPLCERIK-----IQIRDWDRVGNDDVIG 95
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 13/50 (26%)
Query: 390 TDAYCVAKYGNKWIRTRTILDTLDPRWNE-------------QYTWEVYD 426
TD Y +G + RT I + +PRWN + +EV+D
Sbjct: 48 TDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWD 97
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 29/139 (20%)
Query: 368 ILELGILSAKNLMPMTSKDGKLT---DAYCVAK-YGNKWIRTRTILDTL---DPRWNEQY 420
LE+ I+SA++L K+ L Y V + T D +P WNE
Sbjct: 1 TLEITIISAEDL-----KNVNLFGKMKVYAVVWIDPSHKQSTPV--DRDGGTNPTWNETL 53
Query: 421 TW-----EVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTL---ETDRLYTHY 472
+ + +TI V+ C D+ IG+VR+ L L + +
Sbjct: 54 RFPLDERLLQQGRLALTIEVY--CERPSLG----DKLIGEVRVPLKDLLDGASPAGELRF 107
Query: 473 YPLLVLTPSGLKKNGELHL 491
+ PSG K G L+
Sbjct: 108 LSYQLRRPSG-KPQGVLNF 125
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 26/202 (12%)
Query: 220 GRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKD 279
D Y+ + + V ++NPVWNE ++ F D + +++ D D
Sbjct: 456 NGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNE-TFYILLNSFTDPLNLSLYDFNSFKSD 514
Query: 280 EILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEA 339
+++G + + + Q E + ++K + R +
Sbjct: 515 KVVGSTQLDLALLHQNPVK--------------------KNELYEFLRNTKNVGRLTYDL 554
Query: 340 GYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYG 399
+ + E +L+ S L + GIL++ + K L ++SK +
Sbjct: 555 RFFPVIE---DKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYTN--A 609
Query: 400 NKWIRTRTILDTLDPRWNEQYT 421
+ T + T P WN QY
Sbjct: 610 KEVYSTGKLKFTNHPSWNLQYN 631
|
Length = 1227 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 11/118 (9%)
Query: 44 VNVVKARNLPVMDVSGSLDPYVEVKL-GNYKGIAK---HLEKNQNPVWNQIFAFS-KER- 97
+ ++ A +L +++ G + Y V + ++K + NP WN+ F ER
Sbjct: 4 ITIISAEDLKNVNLFGKMKVYAVVWIDPSHK--QSTPVDRDGGTNPTWNETLRFPLDERL 61
Query: 98 LQSNLVEVTVK---DKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK 152
LQ + +T++ ++ D +G V L ++ P L Y+L G
Sbjct: 62 LQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP 119
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 5e-04
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKH-----LEKNQNPVWNQIFAF--S 94
L V++++A+ L D+S DP+V+++L + + K + +P +N+ F+F
Sbjct: 16 LNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVP 75
Query: 95 KERLQSNLVEVTVKDKDI-GKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145
+E L++ + TV ++ +DF+GR+ + W R+
Sbjct: 76 QEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP------SETNHWRRM 121
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 6e-04
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 46 VVKARNLPVMDVSGSLDPYVEVKLGNYKGIAK---HLEKNQNPVWNQIFAF--SKERLQS 100
VV +NLP + G D +V ++G+ K LE NPVWN+ F + +
Sbjct: 2 VVSLKNLP--GLKGKGDRIAKV---TFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPD 56
Query: 101 NLVEVTVKDKD-IGKDDFVGRVTFDLFEV 128
+E+ VKD + +G++ +G T L ++
Sbjct: 57 ESLEIVVKDYEKVGRNRLIGSATVSLQDL 85
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 6e-04
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 42 LFVNVVKARNLP----VMDVSGSLDPYVEVKLGN--YK-GIAKHLEKNQNPVWNQIFAFS 94
+F+ + +LP + +DP+V + G ++ +H NPV+N+ AF
Sbjct: 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRH---TLNPVFNERLAFE 59
Query: 95 KERLQSN-LVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSP 137
+ N ++ V DKD +D+V + + E+ + P P
Sbjct: 60 VYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAPQPDP 104
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 7e-04
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 42 LFVNVVKARNLPVMD-VSGSLDPYVEVKLGNYKGI---AKHLEKNQNPVWNQ--IFAFSK 95
L V + +A +LP D +GS DPYV + + + K+ NPVW + +
Sbjct: 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTP 62
Query: 96 ERLQSNL-VEVTVKDKD-IGKDDFVGRVTFDL 125
+ +++ + + D D DD +GRV DL
Sbjct: 63 DEVKAGERLSCRLWDSDRFTADDRLGRVEIDL 94
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 35/112 (31%), Positives = 46/112 (41%), Gaps = 18/112 (16%)
Query: 369 LELGILSAKNLMPMTSKDG--KLTDAYCVAKY-GNKWIRTRTILDTLDPRWNEQYTWEVY 425
+ L +L A L +K +L D + V G + T TLDP+WNE + V
Sbjct: 2 VRLTVLCADGL----AKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTV- 56
Query: 426 DPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIR------LSTLETDRLYTH 471
P ++ITI VFD KD +G VRIR L RL
Sbjct: 57 GPSSIITIQVFDQKKFK-KKDQGF---LGCVRIRANAVLPLKDTGYQRLDLR 104
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123 |
| >gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 7e-04
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 47 VKARNLPVMDV-SGSLDPYVEVKL-----GNYKGIAK--HLEKNQNPVWNQIFAF----- 93
+ RNL DV S S DP+V V + G + I + ++ N NP + F
Sbjct: 7 ISCRNLLDKDVLSKS-DPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFE 65
Query: 94 SKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEV 128
++L+ + +V K KD+ DF+G L E+
Sbjct: 66 EVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEI 100
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 9e-04
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 659 KEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQ 707
KE D L + ++ D V L S+ +G+L
Sbjct: 78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 9e-04
Identities = 34/126 (26%), Positives = 47/126 (37%), Gaps = 30/126 (23%)
Query: 50 RNLPV-MDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKERLQSN---- 101
+ L +G L PY E+ L Y + +K NP WN S E L ++
Sbjct: 1 KGLDTSESKTGLLSPYAELYLNGKLVYT--TRVKKKTNNPSWNA----STEFLVTDRRKS 54
Query: 102 LVEVTVKDKDIGKDDFVGRVTF---DLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEI 158
V V VKD D +G V+ DL + QW+ L QG I
Sbjct: 55 RVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVG-------QQWFPLSGNG-----QGRI 102
Query: 159 -MLAVW 163
+ A+W
Sbjct: 103 RISALW 108
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.001
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 373 ILSAKNLMPMTSKDGKLTDAYCVAKYGNKWI-RTRTILDTLDPRWNEQYTWEVYDPCTVI 431
I+ KNL P G +D YC+ K N+ I RT T+ TL+P W E+YT + +
Sbjct: 6 IVEGKNL-PAKDITGS-SDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTV 63
Query: 432 TIGVFDNCHVNGSKDDAI--DQRIGKVRIRLSTLETD-RLYTHYYPLLVLTPSGLKKNGE 488
+ V D +D + D IGKV + + R + L + P + GE
Sbjct: 64 SFYVLD--------EDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGE 114
Query: 489 LHLALR 494
+HL L
Sbjct: 115 IHLELS 120
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 201 LYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRV---TRPSHVRSVNPVWNEEHMFV 257
L+ +R+ A++L D YV + N R TR + ++NP W+EE F
Sbjct: 2 LFTIRIV--RAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIY-DTLNPRWDEE--FE 56
Query: 258 ASEPFED--LIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNL 309
P + I TV DR GK ++ GR ++ P+R LP W +L
Sbjct: 57 LEVPAGEPLWISATVWDRSFVGKHDLCGRAS--LKLDPKRFGDDGLPREIWLDL 108
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 373 ILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVI 431
+ SA+ L + +D D Y + K + +R+ DTL P ++ Q + P + I
Sbjct: 9 VHSAEGL---SKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPI 65
Query: 432 TIGVFD 437
I V++
Sbjct: 66 KIQVWN 71
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVR-SVNPVWNEEHMFVASEPF 262
L++ V EA L P + P Y I L N V+V R + VR NPVW+EE +F P
Sbjct: 6 LQLNVLEAHKL-PVK--HVPHPYCVISL-NEVKVAR-TKVREGPNPVWSEEFVFDDLPPD 60
Query: 263 EDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNL--HKPSLSAEEGA 320
+ +++ ++ KD + + + + ET + W+ L P E G+
Sbjct: 61 VNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDE-----WYPLSSASPLKGGEWGS 115
Query: 321 EKKKEKFSSKI 331
+ + ++S ++
Sbjct: 116 LRIRARYSHEL 126
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126 |
| >gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 38 QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKER 97
Q+ L +NV++A LPV V PY + L K + + NPVW++ F F
Sbjct: 2 QVRSLQLNVLEAHKLPVKHVP---HPYCVISLNEVKVARTKVREGPNPVWSEEFVFDDLP 58
Query: 98 LQSNLVEVTVKDKDI-GKDDFVGRVTFDL 125
N +++ +K KD + VT L
Sbjct: 59 PDVNSFTISLSNKAKRSKDSEIAEVTVQL 87
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126 |
| >gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 15/100 (15%)
Query: 62 DPYVEVKLGNYK-GIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGR 120
DPY V L + + +E ++NPVWN+ F S+ VE TVKD D+ +GR
Sbjct: 59 DPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASH-VEFTVKDNDVVGAQLIGR 117
Query: 121 VTFDLFEVPHRVPPDSPLAPQ----WYRLEDRKGDKITQG 156
+P + L+ + W + D G G
Sbjct: 118 A---------YIPVEDLLSGEPVEGWLPILDSNGKPPKPG 148
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 13/143 (9%)
Query: 354 LQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWI-RTRTILDTL 412
L P M G L + + S +NL +D + K + +T+ + TL
Sbjct: 1030 LPPVEMVENSGY---LTIMLRSGENLPSSDENG--YSDPFVKLFLNEKSVYKTKVVKKTL 1084
Query: 413 DPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHY 472
+P WNE++T EV V + +VN + +G I LS LE
Sbjct: 1085 NPVWNEEFTIEV--LNRVKDVLTI---NVNDWDSGEKNDLLGTAEIDLSKLEPGGTTN-- 1137
Query: 473 YPLLVLTPSGLKKNGELHLALRF 495
+ + + + +G LH F
Sbjct: 1138 SNIPLDGKTFIVLDGTLHPGFNF 1160
|
Length = 1227 |
| >gnl|CDD|176040 cd08394, C2A_Munc13, C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERL 98
M L V V KA+ + + YV +K+ N K + +Q P W Q F F RL
Sbjct: 1 MSLLCVLVKKAK---LDGAPDKFNTYVTLKVQNVKSTTIAVRGSQ-PCWEQDFMFEINRL 56
Query: 99 QSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPH 130
LV + + +K + D VG V L +
Sbjct: 57 DLGLV-IELWNKGLIWDTLVGTVWIPLSTIRQ 87
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.003
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 369 LELGILSAKNLMPMTSKDGK-LTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP 427
+ + ++ A+ L+ +KD +D Y + G RT+TI L+P WNE++ +E ++
Sbjct: 3 ISITVVCAQGLI---AKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS 59
Query: 428 CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLS 461
I + V+D +DD I R+ + R S
Sbjct: 60 SDRIKVRVWD-------EDDDIKSRLKQKFTRES 86
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAF------SK 95
L V V++A L D S D YV+V G + + + N NP WN F F
Sbjct: 30 LTVTVLRATGL-WGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPG 88
Query: 96 ERLQSNLVEVTVKDKDIG-KDDFVGR 120
+L+ V D+D G DD +G
Sbjct: 89 GKLR-----FEVWDRDNGWDDDLLGT 109
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.004
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYC---VAKYGNKWIRTRTILD--TLDPRWNEQYT 421
G L + IL AKNL M G L+D Y + + G + + +T + TL+P +NE ++
Sbjct: 15 GKLTVVILEAKNLKKMDV--GGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFS 72
Query: 422 WEV 424
+EV
Sbjct: 73 FEV 75
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.004
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 391 DAYCVA---KYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDD 447
D Y A K+G TR I L+P W E TW V + G +C + S
Sbjct: 24 DPYVTASFAKFGKPLYSTRIIRKDLNPVWEE--TWFVLVTPDEVKAGERLSCRLWDSDRF 81
Query: 448 AIDQRIGKVRIRLSTLETDR 467
D R+G+V I L L DR
Sbjct: 82 TADDRLGRVEIDLKELIEDR 101
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 782 | |||
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 100.0 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.97 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.95 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.93 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.91 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.91 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.88 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.88 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.87 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.86 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.86 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.86 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.86 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.84 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.83 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.83 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.82 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.82 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.82 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.81 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.81 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.81 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.81 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.81 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.81 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.81 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.81 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.8 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.8 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.8 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.8 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.79 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.79 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.78 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.78 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.77 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.77 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.77 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.77 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.77 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.77 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.77 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.77 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.77 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.77 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.77 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.77 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.77 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.76 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.76 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.76 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.76 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.76 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.76 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.76 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.76 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.76 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.75 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.75 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.75 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.75 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.75 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.75 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.75 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.75 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.75 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.75 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.75 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.74 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.74 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.74 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.74 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.74 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.74 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.74 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.73 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.73 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.73 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.73 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.73 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.73 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.72 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.72 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.72 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.72 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.72 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.72 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.72 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.71 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.71 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.71 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.71 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.71 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.71 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.7 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.7 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.7 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.7 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.7 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.7 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.7 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.69 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.69 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.69 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.69 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.69 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.69 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.68 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.68 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.68 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.68 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.67 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.67 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.67 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.67 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.67 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.67 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.67 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.67 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.67 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.66 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.66 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.66 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.66 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.66 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.66 | |
| PF04842 | 683 | DUF639: Plant protein of unknown function (DUF639) | 99.65 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.65 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.65 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.65 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.65 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.65 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.64 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.64 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.64 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.64 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.64 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.64 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.64 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.64 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.64 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.64 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.64 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.63 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.63 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.63 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.63 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.63 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.62 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.62 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.62 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.62 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.62 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.62 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.62 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.62 | |
| PLN03008 | 868 | Phospholipase D delta | 99.61 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.61 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.61 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.6 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.6 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.59 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.59 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.59 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.59 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.59 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.58 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.58 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.57 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.57 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.57 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.57 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.57 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.56 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.56 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.56 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.55 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.55 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.54 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.54 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.53 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.53 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.53 | |
| PLN03008 | 868 | Phospholipase D delta | 99.52 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.52 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.52 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.51 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.5 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.5 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.49 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.49 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.49 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.49 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.48 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.48 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.46 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.44 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.43 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.42 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.37 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.33 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.31 | |
| PF06398 | 359 | Pex24p: Integral peroxisomal membrane peroxin; Int | 99.3 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.24 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.23 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.23 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.2 | |
| PLN02270 | 808 | phospholipase D alpha | 99.2 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.18 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.17 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.15 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.15 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.11 | |
| PF11696 | 642 | DUF3292: Protein of unknown function (DUF3292); In | 99.09 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.08 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 99.07 | |
| PLN02270 | 808 | phospholipase D alpha | 99.05 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 99.03 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.02 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.98 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.97 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.95 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.93 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.92 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.91 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.89 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.87 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.86 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.85 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.84 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.82 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.82 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.79 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.79 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.7 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.63 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.58 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 98.56 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.56 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 98.49 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.35 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.28 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 97.82 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.78 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.62 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.59 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.5 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.46 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.33 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.29 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.0 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.77 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 96.5 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.98 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.62 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.48 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.32 | |
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 95.27 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.25 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 95.17 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 94.99 | |
| PF02453 | 169 | Reticulon: Reticulon; InterPro: IPR003388 Eukaryot | 94.87 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 94.87 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 94.79 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 94.63 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 93.86 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 93.61 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 93.12 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 92.73 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 92.31 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 91.99 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 91.95 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 91.73 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 91.04 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 90.83 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 89.71 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 88.35 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 88.23 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 88.14 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 86.95 | |
| PF11696 | 642 | DUF3292: Protein of unknown function (DUF3292); In | 85.05 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 84.18 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 83.26 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 83.01 | |
| PF11618 | 107 | DUF3250: Protein of unknown function (DUF3250); In | 82.37 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 80.13 |
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=336.83 Aligned_cols=156 Identities=63% Similarity=1.185 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCcccccccccccccccccCCCcccccccCCCCCCCChHHHHHHHHHHHHhHhh
Q 045512 617 LPTIFLYLFLIGMWNYRFRPRHPPQVDAKLSQAINAHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQ 696 (782)
Q Consensus 617 ~p~~~l~l~~~~~~~~~~~~~~p~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 696 (782)
+|++|++++++++|||++||++|+|+|.++|++++++ +||+|||+|++|++++.+.+++||++||+++++
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~----------~deldEEfD~~ps~~~~~~lr~Rydrlr~va~r 70 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAH----------PDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGR 70 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCC----------cchhhhhhcccccccccHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHhhhhcccCchhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhccCCCCCCCCCCcchhhhccCCC
Q 045512 697 LQTVVGDLASQCERVQAILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSKMPSVPVNFFKSFPS 776 (782)
Q Consensus 697 vQ~~~~~~a~~~e~~~~l~~w~~p~~s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~lr~P~~~~~~~~~~~~~~~r~ps 776 (782)
|||++|++|+++||++|+|+|+||++|++++++|+++|+++|++|+|+++++||+|++|||+||+++|+.++|||+||||
T Consensus 71 vQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs 150 (156)
T PF08372_consen 71 VQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPS 150 (156)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCC
Q 045512 777 KSDMLI 782 (782)
Q Consensus 777 ~~d~~~ 782 (782)
++|+||
T Consensus 151 ~~d~~l 156 (156)
T PF08372_consen 151 RSDSML 156 (156)
T ss_pred chhhcC
Confidence 999986
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=270.80 Aligned_cols=228 Identities=30% Similarity=0.417 Sum_probs=195.1
Q ss_pred ccCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEec--c
Q 045512 23 YRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKE--R 97 (782)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~--~ 97 (782)
+.|...+++.|+. +...|.|+|++|++|+.+|..|.+||||++++.+ .+.+|++.++|+||+|||+|.|.+. +
T Consensus 152 ~~G~l~fsl~Yd~--~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~ 229 (421)
T KOG1028|consen 152 AVGNLQFSLQYDF--ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEE 229 (421)
T ss_pred eeeeEEEEEEecc--cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHH
Confidence 5678999999999 5679999999999999999778999999999985 4789999999999999999999953 4
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc-ccceEEEEEEEEcccCCcccccc
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK-ITQGEIMLAVWIGTQADESFSEA 175 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~~~~d~~~~~~ 175 (782)
+....|.+.|||+|++ ++++||++.++|..+..... ...|.+|....... ...|+|.++++|.
T Consensus 230 l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~Y~---------- 294 (421)
T KOG1028|consen 230 LSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLCYL---------- 294 (421)
T ss_pred hccCEEEEEEEecCCcccccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEEee----------
Confidence 5678999999999999 99999999999998877542 56899998764221 1227999999886
Q ss_pred ccccccccccccccccccccccCCceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcc
Q 045512 176 WHSDAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVW 250 (782)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~w 250 (782)
|..|.|+|.|++|++|..++.++.+||||++.+-. .+.+|.+.++ +.||+|
T Consensus 295 -----------------------p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~ 350 (421)
T KOG1028|consen 295 -----------------------PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVF 350 (421)
T ss_pred -----------------------cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCcc
Confidence 34567999999999999999999999999999853 3566777775 999999
Q ss_pred cceeEEEecC--CCCCeEEEEEEEccCCCCCceeEEEEEeCCC
Q 045512 251 NEEHMFVASE--PFEDLIIVTVEDRIGPGKDEILGREFIPVRN 291 (782)
Q Consensus 251 ne~f~f~v~~--~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~ 291 (782)
||+|.|.+.. ..+..|.|+|||+|..+.+++||++.+....
T Consensus 351 nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 351 NETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred cccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 9999998763 3345799999999999999999999998774
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=258.42 Aligned_cols=398 Identities=19% Similarity=0.228 Sum_probs=296.1
Q ss_pred ccccccEEEEEEEEeecCCCCC--CCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCC
Q 045512 35 LVEQMHYLFVNVVKARNLPVMD--VSGSLDPYVEVKLGN-YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKD 111 (782)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~~-~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d 111 (782)
.....|.|.|+|.+|++|...+ .+++.|||+.+.+.+ ...+|++++++.||+|||+|+..+... ++.|.++|||.+
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n 509 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFN 509 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecc
Confidence 3457899999999999999888 689999999999876 467999999999999999999999875 688999999988
Q ss_pred CC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccCCccccccccccccccccccccc
Q 045512 112 IG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDAHNISQTNLAN 190 (782)
Q Consensus 112 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 190 (782)
.. +|+.+|+..++|..|..+.... .+-+.+.. +.... |+|...+.+.+............ +
T Consensus 510 ~~~sd~vvG~~~l~L~~L~~~~~~~----ne~~e~~~--~~k~v-GrL~yDl~ffp~~e~k~~~~~s~-------e---- 571 (1227)
T COG5038 510 SFKSDKVVGSTQLDLALLHQNPVKK----NELYEFLR--NTKNV-GRLTYDLRFFPVIEDKKELKGSV-------E---- 571 (1227)
T ss_pred ccCCcceeeeEEechHHhhhccccc----cceeeeec--cCccc-eEEEEeeeeecccCCcccccccc-------C----
Confidence 88 9999999999999998865433 23344433 22223 99999996664332211110000 0
Q ss_pred cccccccCCceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee-eecccccCCCCCCcccceeEEEecCCCCCeEEEE
Q 045512 191 TISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLV-RVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVT 269 (782)
Q Consensus 191 ~~~~~~~~p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~-~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~ 269 (782)
.......|++.+++.++++|..... .....++.+++..+. +.|+..+. +.+|.||+++...+.+.....+.+.
T Consensus 572 ----~~ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~-t~~~~wn~~~~~~v~~~~ns~~~~~ 645 (1227)
T COG5038 572 ----PLEDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKF-TNHPSWNLQYNVLVTDRKNSSIKVV 645 (1227)
T ss_pred ----CcccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeee-ccCCceeeecceEeccCcceeEEEE
Confidence 0011236889999999999965332 223334888887755 44566665 9999999999999988888889999
Q ss_pred EEEccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccccccCCCCCC
Q 045512 270 VEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTH 349 (782)
Q Consensus 270 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~~~~~~~~ 349 (782)
++|.. ..+.+|+...+|.++.. .......||++..+. |+|.++.++.+.|...+
T Consensus 646 ~~d~~---~g~~i~~~~~~l~~li~----~t~dt~~~f~~~~~k---------------g~I~~t~~W~Pi~~~~~---- 699 (1227)
T COG5038 646 TFDVQ---SGKVIATEGSTLPDLID----RTLDTFLVFPLRNPK---------------GRIFITNYWKPIYNAGG---- 699 (1227)
T ss_pred ecccc---cCceeccccccchHhhh----ccccceEEEEcCCCc---------------ceEEEEeccceeecccc----
Confidence 98864 56788998888888873 344567899998764 99999887765442211
Q ss_pred CCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeCC
Q 045512 350 FSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLDPRWNEQYTWEVYDP 427 (782)
Q Consensus 350 ~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~~T~~~~~t~nP~wne~~~f~v~~~ 427 (782)
.+++.....++|.++|.|..|.+|.+. ...+. |||++|.+++ .++||-....++||.||+....++..+
T Consensus 700 ------~~s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk 770 (1227)
T COG5038 700 ------SSSKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSK 770 (1227)
T ss_pred ------ccceeeecCccceEEEEeehhhccccc---ccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCC
Confidence 112223457889999999999999843 23455 9999999987 568999999999999999999999999
Q ss_pred CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccC---CcEEEEEEE---cee-eCCCCCccccEEEEEEEEEEC
Q 045512 428 CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLET---DRLYTHYYP---LLV-LTPSGLKKNGELHLALRFTCT 498 (782)
Q Consensus 428 ~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~---L~~-~~~~g~~~~G~i~l~~~~~~~ 498 (782)
.+.+.++++|....+ .|..||.+.|+++++.. +..+...+. ... ...+|.+..|.+.+.++|-+.
T Consensus 771 ~~r~~l~~~~~~~sg------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~ 842 (1227)
T COG5038 771 NQRLTLECMDYEESG------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPA 842 (1227)
T ss_pred ccEEeeeeecchhcc------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEee
Confidence 999999999999876 89999999999999865 111111111 000 111233446889988888554
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=237.51 Aligned_cols=215 Identities=24% Similarity=0.352 Sum_probs=176.9
Q ss_pred ceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeecccccCCCCCCcccceeEEEecC--CCCCeEEEEEEEcc
Q 045512 200 KLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN---LVRVTRPSHVRSVNPVWNEEHMFVASE--PFEDLIIVTVEDRI 274 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~d 274 (782)
+...|.|+|++|++|+.++..|.+||||++++.. .+.+|++.++ ++||.|||+|.|.+.. .....|.++|||+|
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 3446999999999999999777899999999974 5788999986 9999999999999643 34567999999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccccccCCCCCCCCCCC
Q 045512 275 GPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDL 354 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~~~~~~~~~~~d~ 354 (782)
.++++++||++.++|..+.... ....|.+|...... .....|+|.+.+|.
T Consensus 244 rfsr~~~iGev~~~l~~~~~~~-----~~~~w~~l~~~~~~--------~~~~~gel~~sL~Y----------------- 293 (421)
T KOG1028|consen 244 RFSRHDFIGEVILPLGEVDLLS-----TTLFWKDLQPSSTD--------SEELAGELLLSLCY----------------- 293 (421)
T ss_pred CcccccEEEEEEecCccccccc-----cceeeeccccccCC--------cccccceEEEEEEe-----------------
Confidence 9999999999999998876421 25679999876411 11112899998874
Q ss_pred CccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC--C---EEEeeccccCCCCCccccEEEEEEeC--
Q 045512 355 QPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG--N---KWIRTRTILDTLDPRWNEQYTWEVYD-- 426 (782)
Q Consensus 355 ~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~---~~~~T~~~~~t~nP~wne~~~f~v~~-- 426 (782)
.+..|.|+|.|++|++|..++. .+. ||||++.+- . .+.+|.++++++||+|||.|.|.|..
T Consensus 294 --------~p~~g~ltv~v~kar~L~~~~~---~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~ 362 (421)
T KOG1028|consen 294 --------LPTAGRLTVVVIKARNLKSMDV---GGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQ 362 (421)
T ss_pred --------ecCCCeEEEEEEEecCCCcccC---CCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHH
Confidence 3445999999999999998764 355 999999882 2 45799999999999999999998873
Q ss_pred C-CceEEEEEEeCCCCCCCCCCcCCCccEEEEEeccc
Q 045512 427 P-CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLST 462 (782)
Q Consensus 427 ~-~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~ 462 (782)
. ...|.|+|||+|.++ .+++||.+.+....
T Consensus 363 l~~~~l~l~V~d~d~~~------~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 363 LAEVSLELTVWDHDTLG------SNDLIGRCILGSDS 393 (421)
T ss_pred hheeEEEEEEEEccccc------ccceeeEEEecCCC
Confidence 2 347999999999987 77899999998875
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=229.81 Aligned_cols=412 Identities=22% Similarity=0.244 Sum_probs=286.2
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCce
Q 045512 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDF 117 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~ 117 (782)
.|.+.+++.++++|.... .....-++++++.++ .+.|+.++.+.+|.||+.+.-.+.+.....+.+.++|.. ..+.
T Consensus 578 ~GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g~~ 654 (1227)
T COG5038 578 TGILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SGKV 654 (1227)
T ss_pred cceeEEEeeccccccCcc-ccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cCce
Confidence 488999999999998643 222233488999875 667799999999999999999998887888999999976 5678
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc-cCCccccccccccccccccccccccccccc
Q 045512 118 VGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT-QADESFSEAWHSDAHNISQTNLANTISKVY 196 (782)
Q Consensus 118 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (782)
+|+...+|.++..... ....||++..++ |+|.++....+ .... ...+..+
T Consensus 655 i~~~~~~l~~li~~t~----dt~~~f~~~~~k------g~I~~t~~W~Pi~~~~-------------------~~~s~~~ 705 (1227)
T COG5038 655 IATEGSTLPDLIDRTL----DTFLVFPLRNPK------GRIFITNYWKPIYNAG-------------------GSSSKTV 705 (1227)
T ss_pred eccccccchHhhhccc----cceEEEEcCCCc------ceEEEEeccceeeccc-------------------cccceee
Confidence 9999999998887543 256899997443 88888873321 1111 1112233
Q ss_pred cCCceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccC
Q 045512 197 FSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-LVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIG 275 (782)
Q Consensus 197 ~~p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~ 275 (782)
.....|.++|.|..|.++......+++|||+++.+++ .++||-.... +.||.|++.....+..+ .+++.+++.|+..
T Consensus 706 ~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~-~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~ 783 (1227)
T COG5038 706 YDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSS-TLNPIWNEILYVPVTSK-NQRLTLECMDYEE 783 (1227)
T ss_pred ecCccceEEEEeehhhcccccccCcccccceEEEecceeEEEEecccC-ccccceeeeEEEEecCC-ccEEeeeeecchh
Confidence 4567889999999999999888899999999999987 5677776665 99999999998888765 5668899999999
Q ss_pred CCCCceeEEEEEeCCCcccccCCCC--------C-----CC------------CeeEEccCCCCC---------------
Q 045512 276 PGKDEILGREFIPVRNVPQRHETTK--------L-----PD------------PRWFNLHKPSLS--------------- 315 (782)
Q Consensus 276 ~~~d~~lG~~~i~l~~l~~~~~~~~--------~-----~~------------~~w~~L~~~~~~--------------- 315 (782)
.+.|..+|++.++++++..+.++.. . .. .+.|+.......
T Consensus 784 sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~ 863 (1227)
T COG5038 784 SGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRK 863 (1227)
T ss_pred ccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHH
Confidence 9999999999999999876431100 0 00 001110000000
Q ss_pred ------cccc--------c----------cccc--------------ceecce--------------EEEEEEecc-ccc
Q 045512 316 ------AEEG--------A----------EKKK--------------EKFSSK--------------ILIRFCLEA-GYH 342 (782)
Q Consensus 316 ------~~~g--------~----------~~~~--------------~~~~G~--------------l~l~v~~~~-~~~ 342 (782)
+... + ...+ ....|- +.+.+.++. +|+
T Consensus 864 ~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~ 943 (1227)
T COG5038 864 SEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHP 943 (1227)
T ss_pred hhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCc
Confidence 0000 0 0000 001111 122233333 222
Q ss_pred cCCCCC-------------------------------CCCCC-------C-----------Ccc-------ccc----cc
Q 045512 343 VLDEST-------------------------------HFSSD-------L-----------QPS-------SMS----LR 362 (782)
Q Consensus 343 ~~~~~~-------------------------------~~~~d-------~-----------~~~-------~~~----~~ 362 (782)
..-.+. +..+| + +|. ++. .+
T Consensus 944 ~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~ 1023 (1227)
T COG5038 944 QIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSY 1023 (1227)
T ss_pred eeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEE
Confidence 110000 00000 0 000 000 00
Q ss_pred ------------cCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeC-C
Q 045512 363 ------------KGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYD-P 427 (782)
Q Consensus 363 ------------~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~-~ 427 (782)
-.+.|.|.|.+..|.||+.. +.+|. ||||++.+.++ .++|+++++++||+|||.++.+|.. .
T Consensus 1024 tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~---d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~ 1100 (1227)
T COG5038 1024 TPVPVKLPPVEMVENSGYLTIMLRSGENLPSS---DENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRV 1100 (1227)
T ss_pred eecccccCcceeecccCcEEEEEeccCCCccc---ccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccc
Confidence 02589999999999999965 45685 99999999887 7999999999999999999999984 5
Q ss_pred CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 428 CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 428 ~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
...++|.|+|||. +++++.||++.|+|+.|..+..++...+|.++. .+ ...|.++....|
T Consensus 1101 ~D~~~i~v~Dwd~------~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~-~~-~~~g~~~~~~~~ 1160 (1227)
T COG5038 1101 KDVLTINVNDWDS------GEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT-FI-VLDGTLHPGFNF 1160 (1227)
T ss_pred cceEEEEEeeccc------CCCccccccccccHhhcCcCCccceeeeccCcc-eE-ecccEeecceec
Confidence 6799999999997 348999999999999999999888889987643 11 234777766544
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-24 Score=239.53 Aligned_cols=287 Identities=20% Similarity=0.267 Sum_probs=184.4
Q ss_pred CceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee--eecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCC
Q 045512 199 PKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLV--RVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGP 276 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~--~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~ 276 (782)
|....++|+|++|.+|...|.+|.+||||++.+|++. -+...+.+ |+||+|++.|.+....+.+..+.++|||+|..
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 5566799999999999999999999999999999876 44556776 99999999999999888888999999999999
Q ss_pred CCCceeEEEEEeCCC-cccccCCCCCCCCeeEEccCCCCC--c-ccccccc---------cceecceEEEEEEecccccc
Q 045512 277 GKDEILGREFIPVRN-VPQRHETTKLPDPRWFNLHKPSLS--A-EEGAEKK---------KEKFSSKILIRFCLEAGYHV 343 (782)
Q Consensus 277 ~~d~~lG~~~i~l~~-l~~~~~~~~~~~~~w~~L~~~~~~--~-~~g~~~~---------~~~~~G~l~l~v~~~~~~~~ 343 (782)
+.|+.||+..++|.. ...++ ..+....+-|...+...- . ..+...+ .--+.+.. ..+.+.|....
T Consensus 689 ~~d~~iget~iDLEnR~~T~~-~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~ 766 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLENRWLTRH-RARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDI 766 (1105)
T ss_pred cccchhhceehhhhhcccCcC-CcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhh
Confidence 999999999999975 33333 333344443433332100 0 0000000 00000110 11111111000
Q ss_pred -------------------------------CCCCC---CCCCC---------------CCcc-------ccccccCcce
Q 045512 344 -------------------------------LDEST---HFSSD---------------LQPS-------SMSLRKGSIG 367 (782)
Q Consensus 344 -------------------------------~~~~~---~~~~d---------------~~~~-------~~~~~~~~~g 367 (782)
..+.. ...+. +.|. ...-.++...
T Consensus 767 ~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~ 846 (1105)
T KOG1326|consen 767 YDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKY 846 (1105)
T ss_pred hcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhhe
Confidence 00000 00000 0000 0011235678
Q ss_pred EEEEEEEEeeCCCCCCCCCCCC--C-CcEEEEEECC---EEEeeccccCCC----CCccccEEEEEEe------------
Q 045512 368 ILELGILSAKNLMPMTSKDGKL--T-DAYCVAKYGN---KWIRTRTILDTL----DPRWNEQYTWEVY------------ 425 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~--~-dpyv~v~~~~---~~~~T~~~~~t~----nP~wne~~~f~v~------------ 425 (782)
.++|.|..-.+....|.. +.| . |.||+-.+-+ ++++|.+.++++ |-.|.-.|.|.-.
T Consensus 847 ~lrviiWnt~~v~l~dd~-~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke 925 (1105)
T KOG1326|consen 847 ELRVIIWNTDKVRLNDDE-ITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKE 925 (1105)
T ss_pred eEEEEEeeccceeecCcc-ceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhh
Confidence 999999998888765532 222 3 9999998853 468888888754 6666544444210
Q ss_pred -----C-----CCceEEEEEEeCCCCCCCCCCcCCCccEEEEEeccccc----------------------CCcEEEEEE
Q 045512 426 -----D-----PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLE----------------------TDRLYTHYY 473 (782)
Q Consensus 426 -----~-----~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~----------------------~~~~~~~~~ 473 (782)
+ .-..|.|+|||+|.++ +|++||..+++|+++. ..+.+..|+
T Consensus 926 ~~ws~dete~k~p~rl~iqiWD~d~fs------~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWw 999 (1105)
T KOG1326|consen 926 YSWSLDETEFKIPARLIIQIWDNDKFS------KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWW 999 (1105)
T ss_pred hccccccccccCchheEEEecccCccC------hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccc
Confidence 1 0126999999999998 9999999999999962 233467899
Q ss_pred EceeeCCCCCccccEEEEEEEE
Q 045512 474 PLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 474 ~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|+........--+|++++++.+
T Consensus 1000 P~~a~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen 1000 PCQAEEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred eeeecCCCcceecceeeeehhh
Confidence 9998643222338999988765
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-22 Score=213.36 Aligned_cols=252 Identities=21% Similarity=0.282 Sum_probs=196.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFV 118 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~l 118 (782)
..|.|+|.+|+||++.+..|.+||||.|.++.+ .++|.++.+++.|-|.|.|+|.+.... ..|.|-|||.|..+|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F-~~l~fYv~D~d~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTF-RYLSFYVWDRDLKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcce-eeEEEEEecccccccccc
Confidence 479999999999999999999999999999974 789999999999999999999987753 679999999993399999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccCCccccccccccccccccccccccccccccC
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDAHNISQTNLANTISKVYFS 198 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (782)
|.+.|.-.+|..... .+.|+.|......+...|+|++++.+......
T Consensus 84 GKvai~re~l~~~~~-----~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~---------------------------- 130 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPG-----KDTWFSLQPVDPDSEVQGKVHLELALTEAIQS---------------------------- 130 (800)
T ss_pred ceeeeeHHHHhhCCC-----CccceeccccCCChhhceeEEEEEEeccccCC----------------------------
Confidence 999999999977542 56899998776544345999999866421110
Q ss_pred CceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe----eeecccccCCCCCCcccceeEEEecCC-------------
Q 045512 199 PKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNL----VRVTRPSHVRSVNPVWNEEHMFVASEP------------- 261 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~----~~kT~~~~~~t~nP~wne~f~f~v~~~------------- 261 (782)
.-+...+++++++.+... +.+|||+++...+. ..+|++.++ |.+|.|+|.|.|.+...
T Consensus 131 ---~~~~c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 131 ---SGLVCHVLKTRQGLPIIN-GQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred ---CcchhhhhhhcccCceeC-CCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCccc
Confidence 013444555556555443 44999999999753 458888887 99999999999987644
Q ss_pred --CCCeEEEEEEE-ccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEec
Q 045512 262 --FEDLIIVTVED-RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLE 338 (782)
Q Consensus 262 --~~~~L~i~V~d-~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~ 338 (782)
....|++.+|+ ++....++|+|++.+++..+... .....||-|.+.. +|++...+...|.+.++++..
T Consensus 206 e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~-----s~p~~W~~Lqp~~----~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQK-----SSPAAWYYLQPRP----NGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred CCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhc-----cCccceEEEecCC----CcccCCCCCCccceeeeEEee
Confidence 12257888888 55566799999999999887632 2367899999875 455445566678888888764
Q ss_pred c
Q 045512 339 A 339 (782)
Q Consensus 339 ~ 339 (782)
.
T Consensus 277 ~ 277 (800)
T KOG2059|consen 277 E 277 (800)
T ss_pred e
Confidence 3
|
|
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=177.08 Aligned_cols=120 Identities=64% Similarity=1.092 Sum_probs=104.7
Q ss_pred EEEEEEEeeC---CCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 045512 369 LELGILSAKN---LMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGS 444 (782)
Q Consensus 369 l~v~v~~a~~---L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~ 444 (782)
|+|+|++|+| |..+ +..|+ ||||++++++++.||+++++++||+|||+|.|.+.++...|.|+|||++.++.+
T Consensus 2 L~v~v~~A~~~~~l~~~---d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 2 LEVGILGAQGLDVLRAK---DGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWK 78 (126)
T ss_pred eEEEEEEeECCcccccc---ccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccc
Confidence 7899999999 5544 45577 999999999999999999999999999999999998878999999999875211
Q ss_pred CCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEE
Q 045512 445 KDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHL 491 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 491 (782)
+...+|++||++.|+|+++..+..+.+||+|...++++.++.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 12237999999999999999999999999999887777778899886
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=182.81 Aligned_cols=150 Identities=59% Similarity=1.003 Sum_probs=128.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCcee
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEIL 282 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~l 282 (782)
+|+|+|++|++|+..+..|.+||||++.++++..+|+++.+++.||.|||.|.|.+.++..+.+.|+|+|++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 38999999999999999999999999999999999999865469999999999999877677899999999988899999
Q ss_pred EEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccccccCCCCCCCCCCCCc
Q 045512 283 GREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQP 356 (782)
Q Consensus 283 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~ 356 (782)
|++.++|+++.... +.+....+||+|.+.... ..+++..+..|+|++++++.++|++.+++.+|++|++|
T Consensus 81 G~v~i~L~~l~~~~-~~~~~~~~W~~L~~~~~~---~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 81 GRAVIPLNDIERRV-DDRPVPSRWFSLERPGGA---MEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEEHHHCcccC-CCCccCCceEECcCCCCc---ccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 99999999987542 344568999999976410 01223346689999999999999999999999998865
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-21 Score=208.73 Aligned_cols=247 Identities=20% Similarity=0.298 Sum_probs=192.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCce
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-LVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEI 281 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~ 281 (782)
.|.|.|.+|+||+..+..|.+||||.|.+.+ ...||.++.+ ++.|.|.|.|.|.+...+ ..|.|-|||.| +++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcce-eeEEEEEeccc-cccccc
Confidence 4899999999999999999999999999997 5789999997 999999999999996554 45999999999 999999
Q ss_pred eEEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccccccCCCCCCCCCCCCcccccc
Q 045512 282 LGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSL 361 (782)
Q Consensus 282 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~ 361 (782)
||.+.|.=.+|... ...+.|+.|.+-+. +....|++++.+.+..+..
T Consensus 83 IGKvai~re~l~~~-----~~~d~W~~L~~VD~---------dsEVQG~v~l~l~~~e~~~------------------- 129 (800)
T KOG2059|consen 83 IGKVAIKREDLHMY-----PGKDTWFSLQPVDP---------DSEVQGKVHLELALTEAIQ------------------- 129 (800)
T ss_pred cceeeeeHHHHhhC-----CCCccceeccccCC---------ChhhceeEEEEEEeccccC-------------------
Confidence 99999998888742 25889999998752 4567899999998754321
Q ss_pred ccCcceEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEECCEE----EeeccccCCCCCccccEEEEEEeCC----------
Q 045512 362 RKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKW----IRTRTILDTLDPRWNEQYTWEVYDP---------- 427 (782)
Q Consensus 362 ~~~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~----~~T~~~~~t~nP~wne~~~f~v~~~---------- 427 (782)
..-+...++.++++.|.. +++.||||++...+.. .+|+++++|.+|.|+|.|.|.+...
T Consensus 130 ----~~~~~c~~L~~r~~~P~~---~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~ 202 (800)
T KOG2059|consen 130 ----SSGLVCHVLKTRQGLPII---NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFM 202 (800)
T ss_pred ----CCcchhhhhhhcccCcee---CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcC
Confidence 012333455566666532 2234999999986644 5999999999999999999998632
Q ss_pred ------CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCC----ccccEEEEEEEEEE
Q 045512 428 ------CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGL----KKNGELHLALRFTC 497 (782)
Q Consensus 428 ------~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~----~~~G~i~l~~~~~~ 497 (782)
-..|.+.+||+.... ..++|+|++++++..+........||-|.....+.. .--|.+.+.+.+.-
T Consensus 203 ~~~e~~~l~irv~lW~~~~~~-----~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 203 PEEEDDMLEIRVDLWNDLNLV-----INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred cccCCceeeEEEeeccchhhh-----hhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 226899999944322 269999999999999986667789999987644211 12478888877754
|
|
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-21 Score=175.09 Aligned_cols=121 Identities=69% Similarity=1.167 Sum_probs=107.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCceeEE
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGR 120 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~lG~ 120 (782)
+|.|+|++|+||+.+ .+||||++.+++++.+|+++++|.||+|||+|.|.+..+....|.|+|||++..++++||+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence 489999999999987 7899999999999999999999999999999999988766789999999999888999999
Q ss_pred EEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc
Q 045512 121 VTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT 166 (782)
Q Consensus 121 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (782)
+.+++.++..+...++...++||+|.+..+.... |+|++++||++
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~-G~i~l~~~~~~ 121 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVG-GELMLAVWFGT 121 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccc-eEEEEEEEecC
Confidence 9999999987655555667899999988764444 99999999974
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-21 Score=171.90 Aligned_cols=117 Identities=19% Similarity=0.296 Sum_probs=101.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEK-NQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDF 117 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~-t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~ 117 (782)
|.|.|+|++|++|+..+ .|++||||++++++++.+|+++.+ +.||+|||+|.|.+... ...|.|+|||+|.+ +|++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCce
Confidence 68999999999988777 799999999999999999999876 78999999999998763 46799999999999 8999
Q ss_pred eEEEEEEcc-ccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 118 VGRVTFDLF-EVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 118 lG~~~i~l~-~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
||++.+++. .+..+. ..++||+|.+.++.... |+|+|+++|
T Consensus 80 iG~~~i~l~~~~~~g~-----~~~~W~~L~~~~~~~~~-g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNGE-----TLDDWYSLSGKQGEDKE-GMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCCC-----CccccEeCcCccCCCCc-eEEEEEEeC
Confidence 999999996 455443 26899999987766554 999999865
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-21 Score=171.82 Aligned_cols=117 Identities=24% Similarity=0.434 Sum_probs=101.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccC-CCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILD-TLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGS 444 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~-t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~ 444 (782)
|.|+|+|++|++|+..+ .|+ ||||++.++++++||+++++ +.||+|||+|.|.+.+....|.|+|||+|.++
T Consensus 2 g~L~v~v~~Ak~l~~~~----~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~-- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYG----LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT-- 75 (121)
T ss_pred cEEEEEEEEccCCCcCC----CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc--
Confidence 89999999999987543 356 99999999999999999876 79999999999999876678999999999887
Q ss_pred CCCcCCCccEEEEEecc-cccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 445 KDDAIDQRIGKVRIRLS-TLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||.+.|++. .+..++..+.||+|.... |..+.|+|+|.++|
T Consensus 76 ----~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~--~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ----MDERIAWTHITIPESVFNGETLDDWYSLSGKQ--GEDKEGMINLVFSY 121 (121)
T ss_pred ----CCceEEEEEEECchhccCCCCccccEeCcCcc--CCCCceEEEEEEeC
Confidence 8999999999996 578888889999998643 44567999999864
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-20 Score=170.17 Aligned_cols=118 Identities=28% Similarity=0.480 Sum_probs=101.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEecc-----CCCCeEEEEEEeCCCC-CC
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKER-----LQSNLVEVTVKDKDIG-KD 115 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~-----~~~~~L~v~V~d~d~~-~d 115 (782)
++|+|++|+||+.++..|.+||||+|++++++++|+++++++||+|||+|.|.+.. .....|.|.|||++.+ +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999999989999999999999999999999999999999999999866 3567899999999988 89
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc-ccceEEEEEE
Q 045512 116 DFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK-ITQGEIMLAV 162 (782)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~ 162 (782)
++||++.|+|.++..... ....+||+|.+..+.. ...|+|++++
T Consensus 81 ~~iG~~~i~l~~l~~~~~---~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKG---RRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccCC---CcccEEEECcCCCCCCccccceEEEEe
Confidence 999999999999974221 2367999998755431 2249999986
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-20 Score=169.37 Aligned_cols=116 Identities=23% Similarity=0.405 Sum_probs=99.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC------CCceEEEEEEeCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYD------PCTVITIGVFDNCHV 441 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~------~~~~l~i~V~d~~~~ 441 (782)
++|+|++|+||++++. .|. ||||+|+++++++||+++++++||+|||.|.|.+.+ ....|.|+|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~---~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGK---SGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCC---CcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 5799999999997653 356 999999999999999999999999999999999986 356899999999987
Q ss_pred CCCCCCcCCCccEEEEEeccccc--CCcEEEEEEEceeeCCCCCccccEEEEEE
Q 045512 442 NGSKDDAIDQRIGKVRIRLSTLE--TDRLYTHYYPLLVLTPSGLKKNGELHLAL 493 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 493 (782)
+ +|++||++.|+|+++. .+.....||+|.....+..+..|+|+|++
T Consensus 78 ~------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 G------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred C------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 6 7999999999999987 66677899999865443334579999986
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-20 Score=167.02 Aligned_cols=111 Identities=33% Similarity=0.544 Sum_probs=98.5
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEe---c
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSK---E 96 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~---~ 96 (782)
|.+.++++|+ .+.|.|+|++|+||+.++ .+.+||||++++.+ .+++|++++++.||+|||+|.|.+ .
T Consensus 2 G~l~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~ 76 (122)
T cd08381 2 GQVKLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVE 76 (122)
T ss_pred CeEEEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChH
Confidence 5688999999 468999999999999999 89999999999973 478999999999999999999986 3
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 045512 97 RLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145 (782)
Q Consensus 97 ~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (782)
++....|.|+|||++.+ ++++||++.++|.++.... ....||+|
T Consensus 77 ~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L 121 (122)
T cd08381 77 DLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ-----ETEKWYPL 121 (122)
T ss_pred HhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCC-----CccceEEC
Confidence 45678999999999998 8999999999999998653 25789987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-19 Score=168.87 Aligned_cols=125 Identities=27% Similarity=0.458 Sum_probs=107.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEK-NQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~-t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~l 118 (782)
+|+|+|++|+||+.++..|.+||||+++++++..+|+++.+ |.||+|||.|.|.+.++....|.|+|+|++.. +|++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 48999999999999999999999999999999999999976 69999999999999776667999999999988 89999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCC-----C-cccceEEEEEEEEcc
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG-----D-KITQGEIMLAVWIGT 166 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-----~-~~~~G~l~l~~~~~~ 166 (782)
|++.++|.++..+.. ......+||+|.+..+ + ....|+|++.+++..
T Consensus 81 G~v~i~L~~l~~~~~-~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 81 GRAVIPLNDIERRVD-DRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEEEEEHHHCcccCC-CCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 999999999976421 2345789999998754 1 122499999998874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=163.10 Aligned_cols=113 Identities=24% Similarity=0.319 Sum_probs=97.8
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-----
Q 045512 42 LFVNVVKARN---LPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG----- 113 (782)
Q Consensus 42 L~V~v~~a~~---L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~----- 113 (782)
|.|+|++|+| |+.+|..|++||||++++++++.+|+++++++||+|||+|.|.+.+. ...|.|+|||++..
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCcccccc
Confidence 7899999999 88899999999999999999999999999999999999999999774 46899999999885
Q ss_pred --CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc-ccceEEEE
Q 045512 114 --KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK-ITQGEIML 160 (782)
Q Consensus 114 --~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l 160 (782)
+|++||++.+++..+..+.. ...||+|...++.. ...|+|.+
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRV-----YAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCE-----EeeEEEeEeCCCCCccCCcEEEe
Confidence 89999999999999987542 57899999765222 12377764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=165.03 Aligned_cols=121 Identities=32% Similarity=0.406 Sum_probs=103.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccC---CCCeEEEEEEeCCCC--CC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERL---QSNLVEVTVKDKDIG--KD 115 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~---~~~~L~v~V~d~d~~--~d 115 (782)
.|+|+|++|++|+..+..|.+||||++.+++++++|++++++.||+|||.|.|.+... ....|.|.|||++.. ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 3899999999999999889999999999999999999999999999999999998653 246899999999877 79
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 116 DFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
++||++.+++.++... .....+||+|+.+.......|+|++++|+.
T Consensus 81 ~~lG~v~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPP----SEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCC----CCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 9999999999999832 234689999987542222249999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-20 Score=167.43 Aligned_cols=116 Identities=29% Similarity=0.470 Sum_probs=97.1
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNG 443 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~ 443 (782)
..|.|+|.|.+|.||...|. .++ ||||++++|+++.||+++++++||+|||.|+|.+.+++..|.++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~---~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDF---LGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeeeecc---ccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 46999999999999997654 255 9999999999999999999999999999999999999999999999999987
Q ss_pred CCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEE
Q 045512 444 SKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLAL 493 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 493 (782)
+||+||.++|+|..+...+. .++ |....+.|... |++.++.
T Consensus 80 -----~dD~mG~A~I~l~p~~~~~~--~~~-l~~~~~~gt~~-~~v~~s~ 120 (168)
T KOG1030|consen 80 -----SDDFMGEATIPLKPLLEAQK--MDY-LKLELLTGTAI-GKVLLSR 120 (168)
T ss_pred -----cccccceeeeccHHHHHHhh--hhc-cccccCCCcEe-eEEEecc
Confidence 99999999999999987763 344 44433334333 6555553
|
|
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-19 Score=159.30 Aligned_cols=110 Identities=19% Similarity=0.268 Sum_probs=92.9
Q ss_pred CceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeccccCCCCCeeccEEEEEec--cCC
Q 045512 26 GDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN----YKGIAKHLEKNQNPVWNQIFAFSKE--RLQ 99 (782)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~i~~t~nP~wne~f~f~~~--~~~ 99 (782)
...+++.|+. ..+.|.|+|++|+||+ . .|.+||||++++.. .+.+|+++++|+||+|||+|.|.+. ++.
T Consensus 2 ~l~fsL~Y~~--~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~ 76 (118)
T cd08677 2 KLHYSLSYDK--QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESL 76 (118)
T ss_pred eEEEEEEEcC--cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhC
Confidence 4578888888 5679999999999999 3 46799999999964 4779999999999999999999875 456
Q ss_pred CCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 045512 100 SNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145 (782)
Q Consensus 100 ~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (782)
...|.|.|||+|.+ ++++||++.+++.++..... ..+|..|
T Consensus 77 ~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~-----~~~W~~~ 118 (118)
T cd08677 77 DGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLG-----AAQWVDL 118 (118)
T ss_pred CcEEEEEEEeCCCCCCCceEEEEEEccccccCCcc-----ccchhcC
Confidence 78899999999999 99999999999998755432 4467543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-19 Score=162.02 Aligned_cols=118 Identities=34% Similarity=0.491 Sum_probs=104.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~l 118 (782)
+|+|+|++|++|+..+..|.+||||++++++ ..++|+++.+|.||+|||+|.|.+... ...|.|+|||++.. ++++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 4899999999999999899999999999998 578999999999999999999998765 47899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
|++.+++.++..+.. ...|++|.+.++... .|+|++.+.+.
T Consensus 80 G~~~~~l~~l~~~~~-----~~~~~~L~~~~~~~~-~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKP-----TEVKLKLEDPNSDED-LGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCC-----eEEEEECCCCCCccC-ceEEEEEEEEC
Confidence 999999999987543 568999987765433 49999998764
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-19 Score=168.77 Aligned_cols=122 Identities=28% Similarity=0.398 Sum_probs=106.3
Q ss_pred eEEEEEEEEeeCCCCCCCC---------------------------CCCCC-CcEEEEEECCEE-EeeccccCCCCCccc
Q 045512 367 GILELGILSAKNLMPMTSK---------------------------DGKLT-DAYCVAKYGNKW-IRTRTILDTLDPRWN 417 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~---------------------------~~~~~-dpyv~v~~~~~~-~~T~~~~~t~nP~wn 417 (782)
|.|.|+|++|++|++||.. .+.|. ||||+|++++.. .||++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 8999999999999998731 24566 999999999865 699999999999999
Q ss_pred cEEEEEEeCCCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 418 EQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 418 e~~~f~v~~~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|.|.|.+.++.+.|.|+|+|++.++ +++||++.|+++++..+...+.||+|.....++.+..|+|+++++|
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~~-------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVVG-------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCcC-------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 9999999888889999999998763 6899999999999998888899999987655555557899999987
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-19 Score=164.14 Aligned_cols=120 Identities=23% Similarity=0.208 Sum_probs=102.2
Q ss_pred ccccCCceeEEEecccccccEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEE
Q 045512 21 LRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMD-VSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFS 94 (782)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~ 94 (782)
.+..|..++++.|. .+.|.|+|++|+||+..+ ..|.+||||++++.+ .++||+++++|+||+|||+|.|.
T Consensus 14 ~~~~G~l~lsl~y~----~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~ 89 (146)
T cd04028 14 SPSMGDIQLGLYDK----KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFD 89 (146)
T ss_pred CCCcceEEEEEEeC----CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEE
Confidence 33578899999994 478999999999999864 568899999999954 27799999999999999999999
Q ss_pred eccCCCCeEEEEEE-eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 95 KERLQSNLVEVTVK-DKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 95 ~~~~~~~~L~v~V~-d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
+. +....|.|+|| |++.+ ++++||++.|+|.++..+.. ...||+|.+...
T Consensus 90 v~-l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~-----~~~Wy~L~~~~~ 141 (146)
T cd04028 90 VS-PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNL-----VIGWYKLFPTSS 141 (146)
T ss_pred Ec-CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCC-----ceeEEecCCccc
Confidence 98 56789999999 57777 89999999999999865432 578999987643
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-19 Score=160.91 Aligned_cols=117 Identities=27% Similarity=0.377 Sum_probs=103.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~ 446 (782)
|+|+|++|+||+..+. .|. ||||++.+++ ..++|++++++.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 2 L~v~v~~a~~L~~~d~---~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~---- 74 (121)
T cd04042 2 LDIHLKEGRNLAARDR---GGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL---- 74 (121)
T ss_pred eEEEEEEeeCCCCcCC---CCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC----
Confidence 7899999999997653 356 9999999987 678999999999999999999999887789999999999876
Q ss_pred CcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEE
Q 045512 447 DAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFT 496 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+|++||++.++++++..+.....|++|.+.. +.++.|+|++++++.
T Consensus 75 --~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~ 120 (121)
T cd04042 75 --TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLT 120 (121)
T ss_pred --CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEEC
Confidence 8999999999999999888889999997643 235679999998874
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-19 Score=161.94 Aligned_cols=117 Identities=28% Similarity=0.434 Sum_probs=101.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEK-NQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFV 118 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~-t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~l 118 (782)
|.|+|+|++|++|+..+..+.+||||++++++++.+|+++.+ +.||+|||.|.|.+.......|.|+|||++..+|++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 579999999999999998999999999999999999998864 7899999999999887656889999999988789999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
|++.+++.++..+.. ..+|++|.... . . .|+|++++.|
T Consensus 81 G~~~~~l~~~~~~~~-----~~~w~~L~~~~-~-~-~G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEGE-----FDDWYELTLKG-R-Y-AGEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcCC-----CCCcEEeccCC-c-E-eeEEEEEEEC
Confidence 999999999876432 57999998643 2 3 3999999864
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-19 Score=163.26 Aligned_cols=124 Identities=25% Similarity=0.437 Sum_probs=104.8
Q ss_pred cccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-C
Q 045512 36 VEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-K 114 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~ 114 (782)
....|.|+|+|++|++|+..+..|.+||||++.++++.++|+++++|.||.|||+|.|.+.+.....|.|+|||++.. +
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 456789999999999999999899999999999999999999999999999999999999877778999999999988 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 115 DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
|++||++.+++.++............+|..+... . .|+|++++.+
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~----~-~g~i~l~~~~ 135 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRLLLHEV----P-TGEVVVKLDL 135 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEeccccc----c-ceeEEEEEEe
Confidence 9999999999999986332222223456666422 1 3999998865
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-19 Score=162.82 Aligned_cols=115 Identities=29% Similarity=0.455 Sum_probs=100.1
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEec--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVS-GSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKE-- 96 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~-- 96 (782)
|.+.+++.|+.. .+.|.|+|++|+||++++.. |.+||||++++.+ .+++|++++++.||+|||+|.|.+.
T Consensus 2 G~i~~sl~y~~~--~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 2 GSVQFALDYDPK--LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred cEEEEEEEEECC--CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 678999999885 46899999999999999875 8999999999953 3579999999999999999999975
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 97 RLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 97 ~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
++....|.|+|||++.. ++++||++.++|.++.... ....||+|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSN-----TQPTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCC-----CCcceEECc
Confidence 34567899999999988 8999999999999997653 257899983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-19 Score=165.44 Aligned_cols=95 Identities=37% Similarity=0.505 Sum_probs=89.8
Q ss_pred cccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-C
Q 045512 36 VEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-K 114 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~ 114 (782)
....|.|+|+|++|.||..+|..+++||||.+++|+++.||+++++++||+|||.|.|.+.++ ...|.+.|||+|.+ +
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSS 80 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCc
Confidence 346789999999999999999889999999999999999999999999999999999999996 68899999999999 9
Q ss_pred CceeEEEEEEccccCCC
Q 045512 115 DDFVGRVTFDLFEVPHR 131 (782)
Q Consensus 115 d~~lG~~~i~l~~l~~~ 131 (782)
||+||+|.|++..+...
T Consensus 81 dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEA 97 (168)
T ss_pred ccccceeeeccHHHHHH
Confidence 99999999999999865
|
|
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-19 Score=161.85 Aligned_cols=119 Identities=25% Similarity=0.314 Sum_probs=102.2
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVS-GSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~ 97 (782)
+|.+++++.|+... +.|.|+|++|+||+.++.. |.+||||++++.+ .++||++++++.||+|||+|.|.+..
T Consensus 1 ~G~i~~sl~Y~~~~--~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~ 78 (128)
T cd08392 1 TGEIEFALHYNFRT--SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEA 78 (128)
T ss_pred CcEEEEEEEEeCCC--CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCH
Confidence 37789999999854 5999999999999999875 9999999999963 36799999999999999999999754
Q ss_pred --CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 98 --LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 --~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|.|||.+.+ ++++||++.|+|.++..... .+....||+|.
T Consensus 79 ~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~--~~~~~~W~~l~ 128 (128)
T cd08392 79 DLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDT--DSQRFLWYPLN 128 (128)
T ss_pred HHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCC--CccccceEECc
Confidence 3467999999999988 99999999999999976532 23478999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.4e-19 Score=160.01 Aligned_cols=118 Identities=27% Similarity=0.455 Sum_probs=101.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~ 446 (782)
|.|.|++|+||++++. .+|. ||||+|.++++ ..+|+++++|+||.|||+|.|.+.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~~--~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSG--PNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCCC--CCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 6789999999998652 2356 99999999875 58999999999999999999999876679999999999876
Q ss_pred CcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 447 DAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||++.++++++..++..+.||+|......+ +..|+|||+++|
T Consensus 76 --~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~ 121 (121)
T cd08401 76 --RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADS-EVQGKVHLELRL 121 (121)
T ss_pred --CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCC-cccEEEEEEEEC
Confidence 8999999999999998888889999998654433 346999998764
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=156.68 Aligned_cols=112 Identities=38% Similarity=0.585 Sum_probs=101.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCceeEE
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFVGR 120 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~lG~ 120 (782)
|+|+|++|+||+..+..|.+||||++++++++.+|+++++|.||.|||+|.|.+.+.....|.|+|||++.. ++++||+
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~ 81 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGR 81 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEE
Confidence 789999999999999889999999999999999999999999999999999998876678999999999998 9999999
Q ss_pred EEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 121 VTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 121 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
+.+++.++..+.. ...|++|.+. . |+|++.+.+
T Consensus 82 ~~~~l~~l~~~~~-----~~~w~~L~~~-----~-G~~~~~~~~ 114 (116)
T cd08376 82 CEIDLSALPREQT-----HSLELELEDG-----E-GSLLLLLTL 114 (116)
T ss_pred EEEeHHHCCCCCc-----eEEEEEccCC-----C-cEEEEEEEe
Confidence 9999999986542 6799999864 1 899888755
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=155.33 Aligned_cols=102 Identities=25% Similarity=0.352 Sum_probs=89.8
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 045512 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFV 118 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~l 118 (782)
|+.|.|+|++|++|+.. +..||||++++++++.+|+++++ .||+|||+|.|.+.+.+ ..|.|+|||++.++|++|
T Consensus 1 m~~L~V~Vv~Ar~L~~~---~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 1 MSLLCVLVKKAKLDGAP---DKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLIWDTLV 75 (127)
T ss_pred CceEEEEEEEeeCCCCC---CCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCcCCCce
Confidence 57899999999999754 45699999999999999999987 59999999999998764 449999999997799999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDR 148 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
|++.|+|.++..+. ..+.++||+|...
T Consensus 76 G~v~i~L~~v~~~~---~~~~~~Wy~L~~~ 102 (127)
T cd08394 76 GTVWIPLSTIRQSN---EEGPGEWLTLDSE 102 (127)
T ss_pred EEEEEEhHHcccCC---CCCCCccEecChH
Confidence 99999999998763 4677999999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-18 Score=157.80 Aligned_cols=118 Identities=29% Similarity=0.463 Sum_probs=100.7
Q ss_pred cCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCC
Q 045512 363 KGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP-CTVITIGVFDNCH 440 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~ 440 (782)
....|.|+|+|++|+||++++. .|. ||||++.++++.++|++++++.||.|||.|+|.+.++ ...|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~---~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNS---NGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCC---CCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 4677999999999999997753 366 9999999999999999999999999999999999875 4689999999998
Q ss_pred CCCCCCCcCCCccEEEEEecccccC-----CcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 441 VNGSKDDAIDQRIGKVRIRLSTLET-----DRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
++ +|++||++.++++++.. ......|.++. + +..|+|+|++.|
T Consensus 88 ~~------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~ 135 (136)
T cd08375 88 FS------PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDL 135 (136)
T ss_pred CC------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEe
Confidence 76 78999999999999975 34455677763 2 345999999876
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=157.25 Aligned_cols=115 Identities=25% Similarity=0.305 Sum_probs=99.1
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc-
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDV-SGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~- 97 (782)
|.+.+++.|+. ..+.|.|+|++|+||+.++. .|.+||||++++.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~y~~--~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 2 GEILFSLSYDY--KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred cEEEEEEEEEC--CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 67889999976 55699999999999998875 48999999999963 36799999999999999999999754
Q ss_pred -CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 98 -LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 -~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|.|||++.. ++++||++.+++.++..... ...||+|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~-----~~~w~~l~ 125 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQ-----HEECLPLH 125 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCC-----cccEEECc
Confidence 4467899999999988 99999999999999987643 67899983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.8e-18 Score=154.28 Aligned_cols=118 Identities=25% Similarity=0.441 Sum_probs=99.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCC-ceEEEEEEeCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKW-IRTRTILDTLDPRWNEQYTWEVYDPC-TVITIGVFDNCHVNG 443 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~-~~T~~~~~t~nP~wne~~~f~v~~~~-~~l~i~V~d~~~~~~ 443 (782)
..|+|.|++|+||++. +. ||||+|.+++.. .||++ +++.||.|||.|.|.+..+. ..++|.|||++..+
T Consensus 4 ~~L~V~Vi~A~~L~~~------~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK------HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCCC------CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC-
Confidence 4699999999999852 34 999999998854 68887 46899999999999876543 57999999999866
Q ss_pred CCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEEE
Q 045512 444 SKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTC 497 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
+|++||++.|+|+++..+...+.||+|......+.+..|+|+|+++|..
T Consensus 76 -----~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 -----KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred -----CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 8999999999999999998889999998765434456799999999853
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-18 Score=154.41 Aligned_cols=103 Identities=28% Similarity=0.387 Sum_probs=88.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeccccCCCCCeeccEEEEEecc---CCCCeEEEEEEeC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-------YKGIAKHLEKNQNPVWNQIFAFSKER---LQSNLVEVTVKDK 110 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~i~~t~nP~wne~f~f~~~~---~~~~~L~v~V~d~ 110 (782)
.|+|+|++|++|+..+ .|.+||||+|++-+ ++++|+++.+|+||+|||+|.|.+.. +....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 59999999999832 35689999999999999999999863 3456799999999
Q ss_pred CCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 111 DIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 111 d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
+.. ++++||++.+++.++..+.. ...|++|+...
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~-----~~~w~~L~~~~ 114 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGS-----CACWLPLGRRI 114 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCc-----EEEEEECcCcc
Confidence 977 79999999999999987542 67899997643
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-18 Score=157.65 Aligned_cols=123 Identities=28% Similarity=0.411 Sum_probs=103.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-------KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG 113 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~ 113 (782)
.|+|+|++|++|+.++..|.+||||++++++. +++|+++++|.||+|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 38999999999999998899999999999764 57999999999999999999998653 46899999999998
Q ss_pred -CCceeEEEEEEccccCCCCCCC-CCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 114 -KDDFVGRVTFDLFEVPHRVPPD-SPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
++++||++.+++.++....+.+ .....+||+|++..+.....|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8999999999999998764422 34577999999764332224999999865
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.4e-18 Score=153.03 Aligned_cols=112 Identities=28% Similarity=0.467 Sum_probs=99.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP-CTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~~~~~~ 445 (782)
.++|.|++|+||++.+. .+. ||||+++++++..+|++++++.||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~~~V~v~~a~~L~~~~~---~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~--- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDD---NGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK--- 74 (116)
T ss_pred CEEEEEEEEECCCCCCC---CCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC---
Confidence 37899999999997754 356 9999999999999999999999999999999999875 679999999999876
Q ss_pred CCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 446 DDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||++.++|+++..+.....|++|.. ..|+|++++.+
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~ 114 (116)
T cd08376 75 ---KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTL 114 (116)
T ss_pred ---CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEe
Confidence 89999999999999998888999999974 14999998765
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-18 Score=153.29 Aligned_cols=116 Identities=23% Similarity=0.354 Sum_probs=98.2
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 045512 42 LFVNVVKARNLPVMD-VSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 42 L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~l 118 (782)
|.|+|++|+||+..+ ..|.+||||+|.++++ .++|+++++|+||+|||+|.|.+.+. ...|.|.|||.+.+ ++++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence 689999999999874 4678999999999875 68999999999999999999998763 47899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEE
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVW 163 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 163 (782)
|++.++++++..+.. ...||+|..........|+|++++.
T Consensus 81 G~~~i~l~~l~~~~~-----~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 81 GKVAIKKEDLHKYYG-----KDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEEHHHccCCCC-----cEeeEEEEccCCCCcccEEEEEEEE
Confidence 999999999986432 5789999875422222499999874
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-18 Score=155.83 Aligned_cols=122 Identities=27% Similarity=0.406 Sum_probs=104.5
Q ss_pred cEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCc
Q 045512 40 HYLFVNVVKARNLPVMDV--SGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDD 116 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~ 116 (782)
|.|+|+|++|+||+..+. .+.+||||++.+++++++|+++++|.||+|||+|.|.+.......|.|+|||++.. +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 579999999999999988 88999999999999999999999999999999999999876678999999999988 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC--cccceEEEEEEE
Q 045512 117 FVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD--KITQGEIMLAVW 163 (782)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l~~~ 163 (782)
+||++.+++.++.... ......+||+|.+.... ....|+|++.+.
T Consensus 81 ~lG~~~i~l~~~~~~~--~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 81 YLGEFDIALEEVFADG--KTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred cceEEEEEHHHhhccc--ccCccceeEEccCcccCccccccceEEEEEE
Confidence 9999999999997532 12236799999876422 122499999873
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.1e-18 Score=152.84 Aligned_cols=117 Identities=26% Similarity=0.474 Sum_probs=101.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~ 445 (782)
|.|+|+|++|+||+.++. .+. ||||++++++...+|++++++.||.|||+|.|.+.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~---~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADI---GGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCC---CCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 689999999999997653 355 9999999999999999999999999999999999876789999999998765
Q ss_pred CCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 446 DDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
++++||++.+++.++..+. ..||+|......+ +..|+|+++++|
T Consensus 75 ---~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 75 ---KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred ---CCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 7899999999999998765 6899998643322 346999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=152.36 Aligned_cols=117 Identities=32% Similarity=0.624 Sum_probs=102.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~l 118 (782)
|.|.|+|++|++|+..+..+.+||||++++++..++|++++++.||.|||+|.|.+.+. ...|.|+|||++.. ++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCcee
Confidence 57999999999999999889999999999999889999999999999999999998764 47899999999987 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
|++.+++.++..+ ..+||+|.+..+.....|+|++++.+
T Consensus 80 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSIKNG-------ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eEEEEEHHHCCCC-------CceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999998653 35899998765443234999998754
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-18 Score=155.69 Aligned_cols=116 Identities=32% Similarity=0.455 Sum_probs=101.3
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeccccCCCCCeeccEEEEEecc--C
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLG---NYKGIAKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~i~~t~nP~wne~f~f~~~~--~ 98 (782)
+|.+.+++.|+. ..+.|.|+|++|+||+..+..|.+||||++++. ...++|++++++.||+|||+|.|.+.. +
T Consensus 2 ~G~l~~sl~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l 79 (124)
T cd08387 2 RGELHFSLEYDK--DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQEL 79 (124)
T ss_pred CCEEEEEEEECC--CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHh
Confidence 467888888877 567999999999999999989999999999995 247899999999999999999998754 3
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
....|.|+|||++.+ ++++||++.+++.++..+.. ...||+|.
T Consensus 80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~-----~~~W~~l~ 123 (124)
T cd08387 80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEK-----LDLWRKIQ 123 (124)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEEecccccCCCC-----cceEEECc
Confidence 356899999999988 89999999999999987542 67899985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-18 Score=155.68 Aligned_cols=115 Identities=28% Similarity=0.505 Sum_probs=98.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccC-CCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILD-TLDPRWNEQYTWEVYDP-CTVITIGVFDNCHVNG 443 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~-t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~~~~ 443 (782)
|.|+|.|++|+||++.+. .+. ||||++++++...+|+++++ +.||.|||.|.|.+..+ ...|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~~---~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRK---LDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCCCc---CCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 689999999999997653 356 99999999999999999865 79999999999999864 56899999998863
Q ss_pred CCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 444 SKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.|++||++.++++++..+....+||+|.. +| +..|+|+|++.|
T Consensus 76 -----~~~~iG~~~~~l~~~~~~~~~~~w~~L~~---~~-~~~G~i~l~l~f 118 (118)
T cd08681 76 -----KPDLIGDTEVDLSPALKEGEFDDWYELTL---KG-RYAGEVYLELTF 118 (118)
T ss_pred -----CCcceEEEEEecHHHhhcCCCCCcEEecc---CC-cEeeEEEEEEEC
Confidence 38899999999999877766789999974 23 456999998865
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-18 Score=154.19 Aligned_cols=117 Identities=28% Similarity=0.448 Sum_probs=100.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCceeE
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFVG 119 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~lG 119 (782)
.|+|+|++|++|+..+..+.+||||++++++.+++|+++++|.||+|||+|.|.+.......|.|+|||++.. ++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 3899999999999999889999999999999999999999999999999999998876667899999999988 899999
Q ss_pred EEEEEccccCCCCCCCCCCCCeEEEeecCCCCc----ccceEEEEEE
Q 045512 120 RVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK----ITQGEIMLAV 162 (782)
Q Consensus 120 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~----~~~G~l~l~~ 162 (782)
++.+++.++..... ...||.|.+....+ ...|.|.+.+
T Consensus 81 ~~~~~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAKQ-----EEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCCC-----CCCEEECCCCCCCCccccCceEEEEEEe
Confidence 99999999976432 56899998643221 2248888765
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-18 Score=151.37 Aligned_cols=102 Identities=29% Similarity=0.477 Sum_probs=92.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEE
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRV 121 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~lG~~ 121 (782)
|.|+|++|++|+..+..+.+||||+++++++.++|+++.+|.||+|||+|.|.+..+....|.|+|+|.+. +++||++
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~ 79 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSL 79 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEE
Confidence 79999999999999888999999999999999999999999999999999999988767899999999986 8999999
Q ss_pred EEEccccCCCCCCCCCCCCeEEEeecC
Q 045512 122 TFDLFEVPHRVPPDSPLAPQWYRLEDR 148 (782)
Q Consensus 122 ~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
.++|.++.... ....++||+|.+.
T Consensus 80 ~i~l~~l~~~~---~~~~~~w~~L~~~ 103 (105)
T cd04050 80 TLPLSELLKEP---DLTLDQPFPLDNS 103 (105)
T ss_pred EEEHHHhhccc---cceeeeeEecCCC
Confidence 99999998653 2347899999764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-18 Score=155.08 Aligned_cols=116 Identities=34% Similarity=0.473 Sum_probs=100.8
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEecc--C
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~~--~ 98 (782)
.|...+++.|+.. .+.|.|+|++|+||+.++..|.+||||++++.+ .+++|++++++.||+|||+|.|.+.. .
T Consensus 2 ~G~l~~~l~y~~~--~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 79 (124)
T cd08385 2 LGKLQFSLDYDFQ--SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSEL 79 (124)
T ss_pred ccEEEEEEEEeCC--CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHh
Confidence 4678888888884 459999999999999999889999999999964 46799999999999999999999754 3
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
....|.|+|||++.+ ++++||++.+++.++..+. ...+|++|+
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08385 80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGH-----VTEEWRDLE 123 (124)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCC-----CcceEEEcc
Confidence 457899999999988 8999999999999987643 367999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-18 Score=155.83 Aligned_cols=115 Identities=39% Similarity=0.584 Sum_probs=97.9
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc-
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER- 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~- 97 (782)
+|...+++.|+.. .+.|.|+|++|+||+..+..+.+||||+|++.+ .+++|++++++.||+|||+|.|.+..
T Consensus 2 ~G~l~~~l~~~~~--~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 79 (125)
T cd04031 2 TGRIQIQLWYDKV--TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRR 79 (125)
T ss_pred cEEEEEEEEEeCC--CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCH
Confidence 5778888888884 458999999999999999889999999999975 57799999999999999999998532
Q ss_pred --CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 98 --LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 --~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|+|||++.. ++++||++.++|.+.... ....||+|+
T Consensus 80 ~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~------~~~~W~~L~ 125 (125)
T cd04031 80 ETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLD------DEPHWYPLQ 125 (125)
T ss_pred HHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccccc------CCcceEECc
Confidence 3457899999999988 899999999999993322 146899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-18 Score=155.07 Aligned_cols=118 Identities=28% Similarity=0.356 Sum_probs=98.8
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEE-ec--
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVS-GSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFS-KE-- 96 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~-~~-- 96 (782)
.|..++++.|+.. .+.|.|+|++|+||+..+.. |.+||||++.+.+ ++.||+++++|.||+|||+|.|. +.
T Consensus 2 ~G~l~~~l~y~~~--~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 2 LGTLFFSLRYNSE--KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CeEEEEEEEEECC--CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 4678999999985 46999999999999998875 8999999999963 46799999999999999999993 43
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 97 RLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 97 ~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+.....|.|+|||++.+ ++++||++.++|.++...... ....|.+|.
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~---~~~~~~~~~ 127 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEG---ELLVSREIQ 127 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCc---eEEEEEecc
Confidence 33456899999999988 999999999999999775321 156787774
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.2e-18 Score=155.31 Aligned_cols=121 Identities=23% Similarity=0.437 Sum_probs=101.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYD-PCTVITIGVFDNCHVNGS 444 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~-~~~~l~i~V~d~~~~~~~ 444 (782)
|.|+|.|++|+||++.+.. +.+. ||||++.++++.++|++++++.||.|||.|.|.+.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~-~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~-- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRS-GKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA-- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCC-CCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC--
Confidence 6899999999999976531 1466 999999999999999999999999999999999997 4679999999999765
Q ss_pred CCCcCCCccEEEEEeccccc---CCcEEEEEEEceeeCCC-CCccccEEEEEEE
Q 045512 445 KDDAIDQRIGKVRIRLSTLE---TDRLYTHYYPLLVLTPS-GLKKNGELHLALR 494 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~~-g~~~~G~i~l~~~ 494 (782)
.+++||++.|++.++. .......||+|...... .....|+|+|++.
T Consensus 78 ----~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 78 ----GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred ----CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 7899999999999987 33446899999875332 2235799999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.2e-18 Score=152.91 Aligned_cols=113 Identities=30% Similarity=0.443 Sum_probs=98.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFV 118 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~l 118 (782)
|.|+|++|++|+..+..+.+||||++++++ ++++|+++++|.||+|||+|.|.+.......|.|+|||++..++++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 789999999999998889999999999964 57899999999999999999999876556789999999998889999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
|++.+++.++..+.. ...|++|.+.. .|+|.+.+.+
T Consensus 82 G~~~~~l~~l~~g~~-----~~~~~~L~~~~-----~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGEK-----VRVTFSLNPQG-----KEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCCc-----EEEEEECCCCC-----CceEEEEEEe
Confidence 999999999987543 67899997642 2888888754
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=151.91 Aligned_cols=118 Identities=24% Similarity=0.380 Sum_probs=97.5
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCc
Q 045512 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDD 116 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~ 116 (782)
...|.|+|++|+||+.+ +.+||||+|.+++. ..+|++. ++.||.|||+|.|.+.......+.|.|||.+.. +|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 45799999999999874 57899999999985 4689874 689999999999986554446799999999988 999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC-CcccceEEEEEEEEc
Q 045512 117 FVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG-DKITQGEIMLAVWIG 165 (782)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~~ 165 (782)
+||++.++|.++..+. ....||+|....+ .....|+|+++++|.
T Consensus 79 ~iG~v~i~l~~l~~~~-----~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 79 EIAEVTVQLSKLQNGQ-----ETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred eEEEEEEEHhHccCCC-----cccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 9999999999987753 2679999987653 122349999999885
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=153.58 Aligned_cols=118 Identities=19% Similarity=0.312 Sum_probs=100.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC--CEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYG--NKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~ 445 (782)
|.|+|++|+||+. ..|. ||||+++++ .++.||+++++++||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5689999999985 2356 999999997 3678999999999999999999999765678999999999865
Q ss_pred CCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEEE
Q 045512 446 DDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTC 497 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
+|++||++.++++++..+.....||+|......+.+..|+|++++.|..
T Consensus 73 ---~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 73 ---DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred ---CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 7999999999999998877778999998653333445799999998843
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=152.89 Aligned_cols=113 Identities=33% Similarity=0.585 Sum_probs=99.6
Q ss_pred cEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC
Q 045512 40 HYLFVNVVKARNLPVMDV------SGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG 113 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~------~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~ 113 (782)
|.|+|+|++|+||+..+. .|.+||||+++++++.++|++++++.||+|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998874 36899999999999999999999999999999999998876678999999999888
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEE
Q 045512 114 KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAV 162 (782)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 162 (782)
++++||++.+++.++..+. ...+||+|.+.. .|+|++.+
T Consensus 81 ~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~~-----~G~~~~~~ 119 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKG-----FIDEWLPLEDVK-----SGRLHLKL 119 (121)
T ss_pred CCCcEEEEEEEHHHhcccC-----ccceEEECcCCC-----CceEEEEE
Confidence 8999999999999998643 367999998642 29998876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=154.63 Aligned_cols=121 Identities=28% Similarity=0.432 Sum_probs=98.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccC---------CCCeEEEEEEeC
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERL---------QSNLVEVTVKDK 110 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~---------~~~~L~v~V~d~ 110 (782)
++|+|+|++|++|+.+|..|.+||||+|.+++++++|+++++|.||+|||+|.|.+..+ ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 57999999999999999999999999999999999999999999999999999975322 125799999999
Q ss_pred CCC-CCceeEEEEE-EccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 111 DIG-KDDFVGRVTF-DLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 111 d~~-~d~~lG~~~i-~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
+.. +|++||++.+ ++..+... ......++|++|....+ . .|+|++++.+.
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~~--~-~Geil~~~~~~ 132 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGGQ--S-AGELLAAFELI 132 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCCC--c-hhheeEEeEEE
Confidence 998 8999999997 44444332 12345789999975432 2 39999998664
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-18 Score=152.70 Aligned_cols=113 Identities=23% Similarity=0.380 Sum_probs=97.6
Q ss_pred ceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeccccCCCCCeeccEEEEEec--cC
Q 045512 27 DKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGIAKHLEKNQNPVWNQIFAFSKE--RL 98 (782)
Q Consensus 27 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~i~~t~nP~wne~f~f~~~--~~ 98 (782)
+.++++|+. ..+.|.|+|++|+||+..+..|.+||||++++-+ .+++|++++++.||+|||+|.|++. ++
T Consensus 3 i~~sL~Y~~--~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L 80 (124)
T cd08680 3 VQIGLRYDS--GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKL 80 (124)
T ss_pred EEEEEEECC--CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHh
Confidence 568888888 4569999999999999998889999999999853 3689999999999999999999975 34
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (782)
....|.|.|||++.. ++++||++.|+|.++..... ....||+|
T Consensus 81 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l 124 (124)
T cd08680 81 YQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEE----MSTKWYNL 124 (124)
T ss_pred hcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCc----cccccccC
Confidence 678999999999988 89999999999999966432 26789876
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-18 Score=151.44 Aligned_cols=106 Identities=25% Similarity=0.422 Sum_probs=93.6
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccC----CCCeEEEEEEeCCC
Q 045512 37 EQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERL----QSNLVEVTVKDKDI 112 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~----~~~~L~v~V~d~d~ 112 (782)
++.+.|+|+|++|++|+ .|.+||||++++++++++|++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 35789999999999998 57899999999999999999999999999999999987542 35689999999998
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 045512 113 G-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDR 148 (782)
Q Consensus 113 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
. ++++||++.++|+++..+. ++.+..+|++|.++
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~--~~~~~~~w~~L~~~ 111 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQP--DHAFLRKWLLLTDP 111 (111)
T ss_pred cccCCccEEEEECCccccCCC--CCcceEEEEEeeCc
Confidence 8 8999999999999998753 45678999999763
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=153.72 Aligned_cols=119 Identities=26% Similarity=0.424 Sum_probs=99.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC----CceEEEEEEeCCCCC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP----CTVITIGVFDNCHVN 442 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~----~~~l~i~V~d~~~~~ 442 (782)
.|.|+|++|+||.+.+. .|. ||||++.+++++.||++++++.||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~L~V~vi~A~~L~~~d~---~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDG---QGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCC---CCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 37899999999997653 356 9999999999999999999999999999999999864 247999999988652
Q ss_pred CCCCCcCCCccEEEEEeccccc-CCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 443 GSKDDAIDQRIGKVRIRLSTLE-TDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.+|++||++.|+++++. .+.....||+|......+ +..|+|+|++.+
T Consensus 78 -----~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 125 (127)
T cd04022 78 -----RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFS-RVRGEIGLKVYI 125 (127)
T ss_pred -----CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCC-CccEEEEEEEEE
Confidence 15899999999999997 566778999998643222 346999998866
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-17 Score=156.94 Aligned_cols=119 Identities=28% Similarity=0.440 Sum_probs=101.4
Q ss_pred cEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCee-eeeccccCCCCCeec
Q 045512 40 HYLFVNVVKARNLPVMD------------------------------VSGSLDPYVEVKLGNYK-GIAKHLEKNQNPVWN 88 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d------------------------------~~g~~dPyv~v~~~~~~-~~T~~i~~t~nP~wn 88 (782)
|.|.|+|.+|++|+.+| ..|++||||+|.+++.+ .+|++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 68999999999999987 35779999999999854 699999999999999
Q ss_pred cEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc-ccceEEEEEEEE
Q 045512 89 QIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK-ITQGEIMLAVWI 164 (782)
Q Consensus 89 e~f~f~~~~~~~~~L~v~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 164 (782)
|+|.|.+... ...|.|.|+|.+..++++||++.+++.++..+. ...+|++|.+..+.. ...|.|++++.|
T Consensus 87 E~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~-----~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGE-----PVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCC-----CcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 9999998664 468999999999887899999999999998643 267999998875543 223899999876
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=152.35 Aligned_cols=105 Identities=17% Similarity=0.217 Sum_probs=90.0
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeC---CCceEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIG 434 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~ 434 (782)
+..|.|.|.|++|+||++.+. ..|. ||||++++. ..+.||++++++.||+|||+|.|.+.. ....|.|+
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~--~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDE--AKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred CCCCeEEEEEEEecCCCccCC--CCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 445889999999999997653 2356 999999984 235799999999999999999999874 24589999
Q ss_pred EEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 435 VFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 435 V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
|||++.++ ++++||++.|+|.++...+..+.||||.
T Consensus 90 V~d~~~~~------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 90 VWHYDRFG------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EEECCCCC------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 99999876 8999999999999998888899999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=152.07 Aligned_cols=116 Identities=28% Similarity=0.548 Sum_probs=99.8
Q ss_pred eEEEEEEEEeeCCCCCCCCC---CCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCC
Q 045512 367 GILELGILSAKNLMPMTSKD---GKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYD-PCTVITIGVFDNCHV 441 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~---~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~-~~~~l~i~V~d~~~~ 441 (782)
|.|+|+|++|+||++++... ..|. ||||+++++++.++|++++++.||.|||.|.|.+.+ ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 67999999999999876421 1356 999999999999999999999999999999999986 467999999999853
Q ss_pred CCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 442 NGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||++.++++++..+.....||+|.+. ..|+|+++++|
T Consensus 81 -------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 81 -------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred -------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 688999999999999888778999999742 45999998764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=154.01 Aligned_cols=104 Identities=22% Similarity=0.347 Sum_probs=89.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEE-eCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVF-DNC 439 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~-d~~ 439 (782)
|.|.|.|++|+||.+.+ +..|. ||||++++.+ .+.||+++++++||+|||+|.|.+......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 78999999999998764 22355 9999999943 368999999999999999999999855679999999 566
Q ss_pred CCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceee
Q 045512 440 HVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVL 478 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 478 (782)
.++ ++++||.+.|+|+++..+.....||+|...
T Consensus 107 ~~~------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 107 RMD------KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCC------CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 654 789999999999999878778899999864
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.75 E-value=8e-18 Score=152.13 Aligned_cols=110 Identities=22% Similarity=0.374 Sum_probs=91.5
Q ss_pred CceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccC-C
Q 045512 26 GDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERL-Q 99 (782)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~-~ 99 (782)
..++++.| ..+.|.|+|++|+||+.++ .|.+||||++++.+ .+.+|++++++.||+|||+|.|.+... .
T Consensus 2 ~l~l~~~~----~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~ 76 (119)
T cd08685 2 QLKLSIEG----QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDY 76 (119)
T ss_pred EEEEEEEE----cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHh
Confidence 35566555 3468999999999999998 88999999999974 366899999999999999999997532 2
Q ss_pred CCeEEEEEEeCCCC--CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 045512 100 SNLVEVTVKDKDIG--KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145 (782)
Q Consensus 100 ~~~L~v~V~d~d~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (782)
...|.|.|||++.. ++++||++.|++.++..+. ...+||.|
T Consensus 77 ~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~Wy~l 119 (119)
T cd08685 77 QKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQK-----EISGWYYL 119 (119)
T ss_pred CCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCc-----cccceEeC
Confidence 35789999999987 4799999999999997543 25799986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.6e-18 Score=156.98 Aligned_cols=104 Identities=26% Similarity=0.405 Sum_probs=89.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEec---------------cCCC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKE---------------RLQS 100 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~---------------~~~~ 100 (782)
.|.|+|++|+||+. .+|.+||||+|++.+ .+.+|+++++|.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 579999999999986 5779999999999999999999984 2234
Q ss_pred CeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 101 NLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 101 ~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
..|.|.|||++.. +|++||++.|++.++.... .....||+|.+.++
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~----~~~~~W~~L~~~~~ 125 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA----GSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccC----CcCcceeecCCccc
Confidence 6799999999988 9999999999999998751 12578999987653
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=147.44 Aligned_cols=102 Identities=17% Similarity=0.207 Sum_probs=85.6
Q ss_pred cCcceEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEECC----EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEE
Q 045512 363 KGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGN----KWIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIGV 435 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~----~~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V 435 (782)
.+..+.|.|+|++|+||+ . + +++||||++++.. .+.+|+++++|+||+|||+|.|.|.. +...|.|+|
T Consensus 10 ~~~~~~L~V~vikA~~L~-~---~-g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 10 DKQKAELHVNILEAENIS-V---D-AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred cCcCCEEEEEEEEecCCC-C---C-CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 455689999999999998 2 1 2359999999964 57899999999999999999999874 356899999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEc
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 475 (782)
||+|.++ ++++||++.++++++..+....+|..|
T Consensus 85 ~d~Drfs------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 85 RCCDRFS------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EeCCCCC------CCceEEEEEEccccccCCccccchhcC
Confidence 9999987 899999999999988555555677654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=150.15 Aligned_cols=117 Identities=29% Similarity=0.445 Sum_probs=98.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCceeE
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFVG 119 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~lG 119 (782)
|.|+|++|++|+.++..|.+||||+++++++ ..+|+++.+|.||+|||.|.|.+... ...|.|+|||++.. +|++||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCEEE
Confidence 7899999999999999999999999999886 47999999999999999999998653 47899999999998 899999
Q ss_pred EEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEE
Q 045512 120 RVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVW 163 (782)
Q Consensus 120 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 163 (782)
++.+++.++..... ...+|++|.+..+.....|+|++.+.
T Consensus 81 ~~~~~~~~~~~~~~----~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHPR----GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCCC----CCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999988864321 25789999865432222399998864
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=151.25 Aligned_cols=99 Identities=24% Similarity=0.353 Sum_probs=87.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEE-e--C-CCceEEEEEE
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEV-Y--D-PCTVITIGVF 436 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v-~--~-~~~~l~i~V~ 436 (782)
+.|.|.|++|+||++++ .+. ||||++++.+ .+.||++++++.||.|||+|.|++ . + ....|.|+||
T Consensus 13 ~~L~V~Vi~A~~L~~~~----~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD----GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred CEEEEEEEEeeCCCCCC----CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 78999999999999775 356 9999999963 468999999999999999999998 3 2 3568999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEc
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 475 (782)
|++.++ ++++||++.|+|+++..++....||+|
T Consensus 89 d~d~~~------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLV------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCc------CCcEEEEEEEeccccccCCCccceEEC
Confidence 999876 899999999999999988778999997
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=152.07 Aligned_cols=116 Identities=34% Similarity=0.464 Sum_probs=100.1
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeccccCCCCCeeccEEEEEec---c
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLG---NYKGIAKHLEKNQNPVWNQIFAFSKE---R 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~i~~t~nP~wne~f~f~~~---~ 97 (782)
.|...+++.|+. ..+.|.|+|++|+||+..+..+.+||||++.+. +++.+|++++++.||+|||+|.|... .
T Consensus 2 ~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~ 79 (125)
T cd08386 2 LGRIQFSVSYDF--QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK 79 (125)
T ss_pred ccEEEEEEEECC--CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHH
Confidence 467889999977 456999999999999999988999999999994 45789999999999999999999742 2
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|+|||++.. ++++||++.+++.++..... ...|+.|.
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~-----~~~W~~l~ 124 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEE-----QTFWKDLK 124 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCC-----cceEEecC
Confidence 3456899999999988 89999999999999986432 67899885
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=152.26 Aligned_cols=115 Identities=31% Similarity=0.445 Sum_probs=99.8
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~-- 97 (782)
|...+++.|+. ..+.|.|+|++|+||+..+..+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+..
T Consensus 3 G~l~~~l~y~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 3 GRIQLTIRYSS--QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred eEEEEEEEEeC--CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 56788999887 5579999999999999999889999999999963 57899999999999999999999753
Q ss_pred CCCCeEEEEEEeCCCC---CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 98 LQSNLVEVTVKDKDIG---KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|.|||.+.. ++++||++.+++.++..+. ...+||+|.
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~ 127 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK-----GFTQWYDLT 127 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccC-----CccceEECc
Confidence 4457899999999873 8999999999999997653 267999984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=150.86 Aligned_cols=115 Identities=25% Similarity=0.338 Sum_probs=99.6
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEE-ec--c
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFS-KE--R 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~-~~--~ 97 (782)
.|...+++.|+... ..|.|+|++|+||+..+..|.+||||++.+.+ ++++|+++++ .||+|||+|.|. +. +
T Consensus 2 ~G~l~~sl~Y~~~~--~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~ 78 (124)
T cd08389 2 CGDLDVAFEYDPSA--RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEE 78 (124)
T ss_pred CEEEEEEEEECCCC--CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHH
Confidence 46788999999854 58999999999999999889999999988853 5789999887 999999999998 54 3
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|.|||++.+ ++++||++.|+|.++.... ....|++|+
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~ 123 (124)
T cd08389 79 LNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG-----ETTVWLTLE 123 (124)
T ss_pred hccCEEEEEEEECCCcccCceEEEEEEeccccCCCC-----CceEEEeCC
Confidence 4568899999999988 8999999999999997643 367999986
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-17 Score=150.81 Aligned_cols=114 Identities=34% Similarity=0.583 Sum_probs=98.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCC--------
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI-------- 112 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~-------- 112 (782)
.|.|+|++|++|+..|..|.+||||+++++++.++|+++.+|.||+|||+|.|.+... ...|.|+|||+|.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 5899999999999999889999999999999999999999999999999999988654 4689999999985
Q ss_pred ----CCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEE
Q 045512 113 ----GKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAV 162 (782)
Q Consensus 113 ----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 162 (782)
.++++||++.+++.++... .++||.|++..+.....|+|++++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~-------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHccCC-------CCeEEECccCCCCCcEeEEEEEEC
Confidence 2689999999999987432 569999998765543359998864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-17 Score=150.91 Aligned_cols=117 Identities=24% Similarity=0.389 Sum_probs=99.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP-CTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~~~~~~ 445 (782)
+|+|+|++|++|.+++. .+. ||||+|++++...+|++++++.||.|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~d~---~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDR---NGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCCCC---CCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 48899999999997753 356 9999999999999999999999999999999999875 468999999999876
Q ss_pred CCcCCCccEEEEEecccccCCcEEEEEEEceeeCCC---CCccccEEEEEE
Q 045512 446 DDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPS---GLKKNGELHLAL 493 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~i~l~~ 493 (782)
++++||++.++|+++..+.....||.|.....+ ..+..|.|++.|
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 75 ---KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred ---CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 789999999999999877667889999864332 123468888876
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=150.05 Aligned_cols=116 Identities=23% Similarity=0.380 Sum_probs=99.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN--YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~l 118 (782)
|.|+|++|+||+. ..|.+||||++++++ ++++|+++.+|.||+|||.|.|.+.. ....|.|+|||++.. ++++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence 5799999999998 679999999999984 57899999999999999999999865 357899999999998 89999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCC--CcccceEEEEEEEEcc
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG--DKITQGEIMLAVWIGT 166 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~~~~~ 166 (782)
|++.+++.++..... ..+|++|....+ ... .|+|.+.+.|..
T Consensus 78 G~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~-~G~l~l~~~~~~ 121 (126)
T cd08678 78 GLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSV-SGSITVEFLFME 121 (126)
T ss_pred EEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCc-ceEEEEEEEEec
Confidence 999999999987543 468999987643 223 399999998753
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-17 Score=148.81 Aligned_cols=111 Identities=24% Similarity=0.380 Sum_probs=95.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC---EEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN---KWIRTRTILDTLDPRWNEQYTWEVYDP-CTVITIGVFDNCHVNG 443 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~---~~~~T~~~~~t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~~~~ 443 (782)
|.|+|++|+||++.+. .+. ||||++++++ ...||++++++.||+|||.|.|.+... ...|.|+|||++.+
T Consensus 2 L~V~vi~a~~L~~~~~---~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKGDL---LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCccCC---CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC--
Confidence 7899999999997653 356 9999999963 678999999999999999999999864 45799999999864
Q ss_pred CCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 444 SKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||++.++++++..+.....|++|.. +..|+|++++.+
T Consensus 77 -----~~~~iG~~~~~l~~l~~g~~~~~~~~L~~------~~~g~l~~~~~~ 117 (119)
T cd04036 77 -----MDDHLGTVLFDVSKLKLGEKVRVTFSLNP------QGKEELEVEFLL 117 (119)
T ss_pred -----CCcccEEEEEEHHHCCCCCcEEEEEECCC------CCCceEEEEEEe
Confidence 58899999999999999999999999964 235999998876
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-17 Score=150.81 Aligned_cols=114 Identities=25% Similarity=0.388 Sum_probs=97.9
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc-
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMD-VSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~- 97 (782)
|.+.++++|+- ..+.|.|+|++|+||+..+ ..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+..
T Consensus 1 G~i~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~ 78 (123)
T cd08521 1 GEIEFSLSYNY--KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKS 78 (123)
T ss_pred CeEEEEEEEeC--CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHH
Confidence 56788889976 4569999999999999988 778999999999853 36799999999999999999998754
Q ss_pred -CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 045512 98 -LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145 (782)
Q Consensus 98 -~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (782)
+....|.|+|||++.. ++++||++.++|.++..+. ....||+|
T Consensus 79 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~l 123 (123)
T cd08521 79 QLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS-----QQSEWYPL 123 (123)
T ss_pred HhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccC-----CCccEEEC
Confidence 3457899999999988 8999999999999997543 25789987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-17 Score=152.15 Aligned_cols=118 Identities=25% Similarity=0.406 Sum_probs=98.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-------EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-------WIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNC 439 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-------~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~ 439 (782)
.|+|+|++|+||+..+. .|. ||||++++++. ..+|++++++.||.|||.|.|.+......|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~d~---~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~ 77 (133)
T cd04033 1 ILRVKVLAGIDLAKKDI---FGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDEN 77 (133)
T ss_pred CEEEEEEEeECCCcccC---CCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECC
Confidence 37899999999997653 356 99999999764 57999999999999999999999765678999999999
Q ss_pred CCCCCCCCcCCCccEEEEEecccccCCcE------EEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 440 HVNGSKDDAIDQRIGKVRIRLSTLETDRL------YTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.++ +|++||++.++++++..+.. ...||+|......+ +..|+|++++.|
T Consensus 78 ~~~------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 78 RLT------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCC------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 876 79999999999999875532 45899998644333 446999999876
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-17 Score=148.28 Aligned_cols=116 Identities=31% Similarity=0.488 Sum_probs=98.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKW-IRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~-~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~ 446 (782)
|.|+|++|+||.+++. .|. ||||++.++++. .||+++++++||.|||.|.|.+.+....|.|+|||++.++
T Consensus 2 l~v~vi~a~~L~~~d~---~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDI---TGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCCCC---CCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 7899999999998764 356 999999998764 6999999999999999999999876689999999999876
Q ss_pred CcCCCccEEEEEecccccCC-cEEEEEEEceeeCCCCCccccEEEEEEE
Q 045512 447 DAIDQRIGKVRIRLSTLETD-RLYTHYYPLLVLTPSGLKKNGELHLALR 494 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 494 (782)
+|++||++.++++++..+ ...+.|++|......+ ...|+|+++++
T Consensus 75 --~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 75 --RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred --CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 899999999999988754 3468899998754333 34699998864
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-17 Score=156.41 Aligned_cols=118 Identities=31% Similarity=0.407 Sum_probs=100.6
Q ss_pred CCceeEEEecccc----------cccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeccccCCCCCeecc
Q 045512 25 GGDKTASSYDLVE----------QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLG-----NYKGIAKHLEKNQNPVWNQ 89 (782)
Q Consensus 25 ~~~~~~~~~~~~~----------~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~i~~t~nP~wne 89 (782)
|...+++.|.... ..+.|.|+|++|+||+..+..|.+||||+|++. ..+++|+++++|.||+|||
T Consensus 2 G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE 81 (162)
T cd04020 2 GELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNH 81 (162)
T ss_pred ceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCC
Confidence 6788999998855 568999999999999999988999999999983 2578999999999999999
Q ss_pred EEEEEec---cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 045512 90 IFAFSKE---RLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 90 ~f~f~~~---~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
+|.|... +.....|.|+|||++.+ ++++||++.+++.++..... ...|+.+.+
T Consensus 82 ~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~-----~~~w~~~~~ 138 (162)
T cd04020 82 TFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQ-----AVDWMDSTG 138 (162)
T ss_pred EEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCC-----ccccccCCh
Confidence 9999742 33456899999999998 89999999999999876542 567887753
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-17 Score=150.22 Aligned_cols=104 Identities=20% Similarity=0.349 Sum_probs=88.4
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEE
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIGV 435 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V 435 (782)
..+.|.|+|++|+||++++. ..|. ||||++++.+ .+.||+++++++||+|||.|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~--~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADP--KKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCC--CCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 34789999999999998753 2255 9999999942 35799999999999999999999874 245899999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
||++.++ ++++||.+.|+|.++..++....||+|.
T Consensus 91 ~d~~~~~------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLG------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCC------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999876 8999999999999998777778999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=146.43 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=98.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGS 444 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~ 444 (782)
...|+|+|++|++|...+. .|. ||||++.++++.++|++++++.||+|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~---~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~--- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDS---GGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL--- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCC---CCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC---
Confidence 3689999999999987653 466 999999999999999999999999999999999988888999999999865
Q ss_pred CCCcCCCccEEEEEecccccCCcEEEEEEEceeeCC-CCCccccEEEEEEEE
Q 045512 445 KDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTP-SGLKKNGELHLALRF 495 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~-~g~~~~G~i~l~~~~ 495 (782)
+|++||.+.++++.+..+. .++|+|..... ...+..|+|.+++..
T Consensus 76 ----~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~G~i~~~~~~ 121 (126)
T cd04046 76 ----CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAGEVPGTISVKVTS 121 (126)
T ss_pred ----CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence 5899999999999875433 67899964321 122457999998765
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=146.47 Aligned_cols=118 Identities=20% Similarity=0.233 Sum_probs=99.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCceeE
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVG 119 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~lG 119 (782)
..|+|+|++|++|+..+..|.+||||++.+++++.+|++++++.||+|||.|.|.+.+. ...|.|+|||++..+|++||
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~lG 81 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEFLG 81 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCceE
Confidence 57999999999999999889999999999999999999999999999999999988764 67899999999888899999
Q ss_pred EEEEEccccCCCCCCCCCCCCeEEEeecCCCC--cccceEEEEEEEEc
Q 045512 120 RVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD--KITQGEIMLAVWIG 165 (782)
Q Consensus 120 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l~~~~~ 165 (782)
++.+++.++.. ...+|++|...... ....|+|.+++.+.
T Consensus 82 ~~~~~l~~~~~-------~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 82 QATLSADPNDS-------QTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred EEEEecccCCC-------cCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 99999987532 24588899643211 12249999988553
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-17 Score=145.70 Aligned_cols=99 Identities=19% Similarity=0.207 Sum_probs=86.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKD 446 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~ 446 (782)
+.|.|.|++|++|+.++ +.||||+|++++++.+|+++++ .||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~-----~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~----- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD-----KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI----- 70 (127)
T ss_pred ceEEEEEEEeeCCCCCC-----CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-----
Confidence 68999999999997422 2399999999999999999988 499999999999998877899999999854
Q ss_pred CcCCCccEEEEEecccccCCcEE--EEEEEceee
Q 045512 447 DAIDQRIGKVRIRLSTLETDRLY--THYYPLLVL 478 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~ 478 (782)
+|++||++.|+|+++..+... ..||+|...
T Consensus 71 --~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 71 --WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred --CCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 799999999999999766554 789999853
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-17 Score=150.16 Aligned_cols=102 Identities=29% Similarity=0.379 Sum_probs=88.6
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEec
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDV--SGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKE 96 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~ 96 (782)
+|.+.+++.|... .+.|.|+|++|+||+.++. .+.+||||+|++.+ .++||++++++.||+|||+|.|.+.
T Consensus 1 ~Gel~~sL~Y~~~--~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~ 78 (138)
T cd08407 1 TGEVLLSISYLPA--ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELP 78 (138)
T ss_pred CCEEEEEEEEeCC--CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECC
Confidence 4778899999874 4689999999999999883 35699999999975 2568999999999999999999985
Q ss_pred c--CCCCeEEEEEEeCCCC-CCceeEEEEEEccc
Q 045512 97 R--LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFE 127 (782)
Q Consensus 97 ~--~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~ 127 (782)
. +....|.|+|||+|.+ ++++||++.+.+..
T Consensus 79 ~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 79 SELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HHHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 3 4567899999999998 99999999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-17 Score=145.66 Aligned_cols=104 Identities=35% Similarity=0.544 Sum_probs=91.4
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeccccCCCCCee-ccEEEEEeccC--CCCeEEEEEEeCCCC-CCc
Q 045512 42 LFVNVVKARNLPVMDV-SGSLDPYVEVKLGNYKGIAKHLEKNQNPVW-NQIFAFSKERL--QSNLVEVTVKDKDIG-KDD 116 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~i~~t~nP~w-ne~f~f~~~~~--~~~~L~v~V~d~d~~-~d~ 116 (782)
|.|+|++|++|+.++. .|.+||||++++++++++|++++++.||+| ||+|.|.+... ....|.|+|||++.. +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 5899999999999884 689999999999999999999999999999 99999998653 357899999999998 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 045512 117 FVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
+||++.+++.++.... +......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~--~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKD--SVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccC--CccccCCeEEccc
Confidence 9999999999998742 2234789999975
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.4e-17 Score=146.15 Aligned_cols=119 Identities=25% Similarity=0.441 Sum_probs=101.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCcee
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEIL 282 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~l 282 (782)
+|+|+|++|++|+.. .+||||++.++++..+|+++++ +.||.|||+|.|.+..+....|.|+|||++.. ++++|
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~l 74 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIER-TSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFL 74 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCC-CCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCcee
Confidence 489999999999887 6899999999999999999986 99999999999998776678899999999876 78999
Q ss_pred EEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEe
Q 045512 283 GREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCL 337 (782)
Q Consensus 283 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~ 337 (782)
|++.++++++..+...++....+||+|.... ..+..|+|.+++.|
T Consensus 75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~----------~~~~~G~i~l~~~~ 119 (121)
T cd08378 75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK----------GGRVGGELMLAVWF 119 (121)
T ss_pred eeEEEEhHhCcCCCCCCCCCCcceEEccCCC----------CCccceEEEEEEEe
Confidence 9999999998754312344578999998764 13567999998876
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-17 Score=149.35 Aligned_cols=118 Identities=20% Similarity=0.316 Sum_probs=101.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeecccc-CCCCCeeccEEEEEeccCC----CCeEEEEEEeCCCC-
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGIAKHLE-KNQNPVWNQIFAFSKERLQ----SNLVEVTVKDKDIG- 113 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~i~-~t~nP~wne~f~f~~~~~~----~~~L~v~V~d~d~~- 113 (782)
.|.|+|++|++|+..+..+.+||||+|++++ ++.+|+++. ++.||+|||+|.|.+.... ...|.|+|||++.+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3799999999999998889999999999998 889999986 5889999999999987653 58899999999987
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEE
Q 045512 114 KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIML 160 (782)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l 160 (782)
++++||++.+++.++......+......||+|..++|+. .|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~--~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP--QGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCc--CeEEeC
Confidence 899999999999999987654334567999999877654 388864
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.8e-17 Score=143.68 Aligned_cols=94 Identities=22% Similarity=0.329 Sum_probs=83.0
Q ss_pred cEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccC-CCCeEEEEEEeCCCC-
Q 045512 40 HYLFVNVVKARNLPVMDVS----GSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERL-QSNLVEVTVKDKDIG- 113 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~----g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~-~~~~L~v~V~d~d~~- 113 (782)
|.|.|+|++|++|+..+.. +.+||||+|+++++++||++++++.||+|||.|.|.+... ....|.|+|||++..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 6899999999999987632 3589999999999999999999999999999999998653 345899999999998
Q ss_pred CCceeEEEEEEccccCCCCC
Q 045512 114 KDDFVGRVTFDLFEVPHRVP 133 (782)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~ 133 (782)
+|++||++.++|.+|..+.+
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCcceEEEEEEHHHHHhhCC
Confidence 99999999999999987653
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=146.72 Aligned_cols=114 Identities=27% Similarity=0.368 Sum_probs=100.2
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccC--CCCeEEEEEEeCCCC-CCceeEEEE
Q 045512 46 VVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERL--QSNLVEVTVKDKDIG-KDDFVGRVT 122 (782)
Q Consensus 46 v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~--~~~~L~v~V~d~d~~-~d~~lG~~~ 122 (782)
|++|++|+. ..|.+||||++++++.+++|++++++.||+|||+|.|.+... ....|.|+|||++.. ++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999998 578999999999999999999999999999999999998653 468899999999988 899999999
Q ss_pred EEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEccc
Q 045512 123 FDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQ 167 (782)
Q Consensus 123 i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 167 (782)
+++.++..+. ....|++|.+.++.... |+|+++++|.+.
T Consensus 80 ~~l~~l~~~~-----~~~~~~~L~~~~~~~~~-~~l~l~~~~~~~ 118 (127)
T cd08373 80 VSLQDLVSEG-----LLEVTEPLLDSNGRPTG-ATISLEVSYQPP 118 (127)
T ss_pred EEhhHcccCC-----ceEEEEeCcCCCCCccc-EEEEEEEEEeCC
Confidence 9999998643 26789999877766555 999999988743
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=146.72 Aligned_cols=104 Identities=22% Similarity=0.398 Sum_probs=90.2
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC---CEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG---NKWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVF 436 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~ 436 (782)
+..|.|.|+|++|+||++++. .|. ||||++.+. ....||++++++.||.|||.|.|.+... ...|.|+||
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~---~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~ 89 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDF---SGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY 89 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCC---CCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence 345899999999999997653 356 999999983 3568999999999999999999998742 458999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
|++.++ +|++||++.|+|+++..++..+.||+|.
T Consensus 90 d~~~~~------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 90 DFDQFS------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred ECCCCC------CCceeEEEEEecccccCCCCcceEEECc
Confidence 999876 7999999999999998777889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-17 Score=148.86 Aligned_cols=101 Identities=32% Similarity=0.305 Sum_probs=88.5
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~-- 97 (782)
|.+.+++.|+.. ...|.|+|++|+||+..+..|.+||||++++.+ .+.||+++++|+||+|||+|.|.+..
T Consensus 2 G~i~~sL~Y~~~--~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~ 79 (136)
T cd08406 2 GEILLSLSYLPT--AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIV 79 (136)
T ss_pred cEEEEEEEEcCC--CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHH
Confidence 678899999875 458999999999999999889999999999953 26689999999999999999999853
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccc
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFE 127 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~ 127 (782)
+....|.|.|||+|.. ++++||++.+....
T Consensus 80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred hCCcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 5678899999999988 99999999997653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=144.91 Aligned_cols=115 Identities=21% Similarity=0.282 Sum_probs=97.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-C--Cce
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLG-NYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-K--DDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~--d~~ 117 (782)
|+|+|++|++|+..+..+.+||||+++++ .+.++|++++++.||+|||+|.|.+.. ...|.|+|||++.. + |++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 78999999999999988999999999997 578899999999999999999999876 57999999999987 3 589
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC--cccceEEEEEE
Q 045512 118 VGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD--KITQGEIMLAV 162 (782)
Q Consensus 118 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l~~ 162 (782)
||++.+++.++..... ...+|++|...... ....|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~~----~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKD----TGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCC----CccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999976432 24679999766531 22238888764
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-17 Score=145.61 Aligned_cols=99 Identities=28% Similarity=0.425 Sum_probs=86.5
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEeccC---CCCeEEEEEEeCCC
Q 045512 40 HYLFVNVVKARNLPVMDVS-GSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKERL---QSNLVEVTVKDKDI 112 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~~~---~~~~L~v~V~d~d~ 112 (782)
|.|+|+|++|++|+..+.. +.+||||+|++.+ ..++|+++++|+||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 5899999999999999987 8999999999953 467999999999999999999987543 34689999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 113 G-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 113 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
. +|++||++.+++.++.. .+.|+++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~--------~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE--------DRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHhc--------CCCCCccc
Confidence 8 89999999999999984 34677764
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=145.83 Aligned_cols=116 Identities=31% Similarity=0.370 Sum_probs=99.0
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeeeeeccccCCCCCeeccEEEEEecc--C
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMD-VSGSLDPYVEVKLG---NYKGIAKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~---~~~~~T~~i~~t~nP~wne~f~f~~~~--~ 98 (782)
|...++++|+-. .+.|.|+|++|+||+..+ ..+.+||||++++. .+.++|++++++.||+|||+|.|.+.. .
T Consensus 1 G~l~~~l~y~~~--~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l 78 (123)
T cd08390 1 GRLWFSVQYDLE--EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKEL 78 (123)
T ss_pred CEEEEEEEECCC--CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHh
Confidence 456788888874 559999999999999998 68899999999985 346789999999999999999999754 2
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
....|.|.|||++.. ++++||++.++|.++..... ...|++|++
T Consensus 79 ~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~-----~~~w~~L~~ 123 (123)
T cd08390 79 QRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKG-----GVVWRDLEP 123 (123)
T ss_pred cccEEEEEEEECCcCCCCcEEEEEEEeccceecCCC-----ceEEEeCCC
Confidence 346899999999988 89999999999999987653 468999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=144.93 Aligned_cols=106 Identities=24% Similarity=0.294 Sum_probs=89.6
Q ss_pred EEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEEEEc
Q 045512 202 YYLRVFVFEAQDLVPSEEG-RAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDR 273 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~-g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~ 273 (782)
+.|.|+|++|+||+..+.. |.+||||++++.. .+.||+++++ +.||+|||+|.|.+... ....|.++|||+
T Consensus 15 ~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 15 SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 3699999999999998875 8899999999962 3678999886 99999999999998543 245799999999
Q ss_pred cCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEcc
Q 045512 274 IGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLH 310 (782)
Q Consensus 274 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 310 (782)
+..+++++||++.|+|+++.-. +......+||+|.
T Consensus 94 ~~~~~~~~lG~~~i~L~~~~~~--~~~~~~~~W~~l~ 128 (128)
T cd08392 94 RTLKRRVFLGEVLIPLADWDFE--DTDSQRFLWYPLN 128 (128)
T ss_pred CCCcCcceEEEEEEEcCCcccC--CCCccccceEECc
Confidence 9989999999999999998643 3345678999874
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=143.94 Aligned_cols=100 Identities=17% Similarity=0.294 Sum_probs=85.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE-C----C--EEEeeccccCCCCCccccEEEEEEeCC----CceEEEEE
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKY-G----N--KWIRTRTILDTLDPRWNEQYTWEVYDP----CTVITIGV 435 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-~----~--~~~~T~~~~~t~nP~wne~~~f~v~~~----~~~l~i~V 435 (782)
.|+|+|++|+||+..+ .|. ||||+|++ | . ++++|+++.+++||+|||.|+|.+... ...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~d----~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQT----TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCccc----CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 3889999999998754 266 99999998 3 2 357899999999999999999999742 34699999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
||++..+ +|++||++.++|+++..++....|++|..
T Consensus 77 ~D~d~~~------~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 77 KDYCFAR------DDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred EEecccC------CCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9998654 78999999999999999888899999964
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-16 Score=145.19 Aligned_cols=124 Identities=24% Similarity=0.427 Sum_probs=102.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKW-IRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGS 444 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~ 444 (782)
...|.|.|++|+||++++ ||||.|.++++. .||+++.++.||.|||.|.|.+..+...+.|.||+.+...
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-------~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~-- 80 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-------RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK-- 80 (146)
T ss_pred EEEEEEEEEEccCCCCcC-------CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc--
Confidence 467999999999998532 799999999987 5999999999999999999987766678999998765321
Q ss_pred CCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCC-------CccccEEEEEEEEEEC
Q 045512 445 KDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSG-------LKKNGELHLALRFTCT 498 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~i~l~~~~~~~ 498 (782)
++..++++||++.|++.++..+...++||||.....+. ....++|+++++|...
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 01226899999999999999999999999999876543 2335799999999654
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-16 Score=145.17 Aligned_cols=115 Identities=28% Similarity=0.408 Sum_probs=98.5
Q ss_pred cEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCee-eeeccccCCCCCeeccEEEEEeccCCCCeEEEEEE
Q 045512 40 HYLFVNVVKARNLPVMDVS----------GSLDPYVEVKLGNYK-GIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVK 108 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~----------g~~dPyv~v~~~~~~-~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~ 108 (782)
|.|+|+|++|++|+..+.. |.+||||++.+++++ .+|+++.+|.||.|||+|.|.+.+ ...|.|.||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v~ 81 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTVF 81 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEEE
Confidence 6899999999999988752 689999999999864 699999999999999999999874 578999999
Q ss_pred eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc
Q 045512 109 DKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT 166 (782)
Q Consensus 109 d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (782)
|++.. ++++||++.++|.++..+. ......|++|+. .|+|++.+.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRG---SGSFDLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccC---CCcccEEEEccC-------CcEEEEEEEEec
Confidence 99887 8899999999999998741 123689999972 299999987753
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=141.55 Aligned_cols=95 Identities=22% Similarity=0.386 Sum_probs=82.7
Q ss_pred eEEEEEEEEeeCCCCCCCCC-CCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC--CceEEEEEEeCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKD-GKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP--CTVITIGVFDNCHVN 442 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~-~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~--~~~l~i~V~d~~~~~ 442 (782)
|.|.|+|++|+||++.+... .++. ||||+++++++.+||+++++++||+|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999876432 2234 9999999999999999999999999999999999753 347999999999876
Q ss_pred CCCCCcCCCccEEEEEecccccCCc
Q 045512 443 GSKDDAIDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
+|++||++.++|++|..+.
T Consensus 81 ------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 ------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ------CCcceEEEEEEHHHHHhhC
Confidence 8999999999999997654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=146.19 Aligned_cols=118 Identities=31% Similarity=0.348 Sum_probs=98.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC--EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN--KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVN 442 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~--~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~ 442 (782)
.|.|+|+|++|+||+..+. ..+. ||||++++++ ...+|+++.++.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~--~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDI--IGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccc--cCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 4889999999999985432 2355 9999999987 789999999999999999999999866789999999998765
Q ss_pred CCCCCcCCCccEEEEEecccccCCcEEEE-EEEceeeCCCCCccccEEEEEEEE
Q 045512 443 GSKDDAIDQRIGKVRIRLSTLETDRLYTH-YYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|++||++.++|.++..+..... ++++.. +.+..|+|+++++|
T Consensus 79 ------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~----~~k~~G~i~~~l~~ 122 (124)
T cd04044 79 ------KDKLIGTAEFDLSSLLQNPEQENLTKNLLR----NGKPVGELNYDLRF 122 (124)
T ss_pred ------CCceeEEEEEEHHHhccCccccCcchhhhc----CCccceEEEEEEEe
Confidence 79999999999999987766543 444531 23456999999987
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=143.98 Aligned_cols=100 Identities=18% Similarity=0.295 Sum_probs=85.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeC--CCceEEEEEEeC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYD--PCTVITIGVFDN 438 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~--~~~~l~i~V~d~ 438 (782)
+.|.|+|++|+||++++ .|. ||||++++.+ .+.||++++++.||.|||+|.|.+.. ....|.|+|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~~----~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN----SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCCC----CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 68999999999999764 255 9999999953 36799999999999999999999874 245799999999
Q ss_pred CCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEc
Q 045512 439 CHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 475 (782)
+..+ ..+++||.+.|+|.++..+..++.||.|
T Consensus 88 ~~~~-----~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS-----RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc-----CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8643 1468999999999999888878999986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=149.30 Aligned_cols=115 Identities=21% Similarity=0.274 Sum_probs=92.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEe---------------C
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVY---------------D 426 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~---------------~ 426 (782)
.|.|+|++|+||.. ..|. ||||+|.+.+ .+.+|++++++.||+|||.|.|.+. +
T Consensus 1 kL~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 37899999999985 2356 9999999976 5789999999999999999999995 1
Q ss_pred C-CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCC-cEEEEEEEceeeCCCC---------CccccEEEEEE
Q 045512 427 P-CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETD-RLYTHYYPLLVLTPSG---------LKKNGELHLAL 493 (782)
Q Consensus 427 ~-~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g---------~~~~G~i~l~~ 493 (782)
. ...|.|.|||++.++ .|++||++.|+|..+..+ .....||+|.....+. ..+.|.|+|++
T Consensus 76 ~~~~~L~i~V~d~~~~~------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 76 AEKLELRVDLWHASMGG------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred ccEEEEEEEEEcCCCCC------CCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 1 247999999998765 799999999999999876 5678999998654322 12357777654
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=143.14 Aligned_cols=101 Identities=27% Similarity=0.457 Sum_probs=88.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCcc-ccEEEEEEeCC---CceEEEEEEeCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRW-NEQYTWEVYDP---CTVITIGVFDNCHVNG 443 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~w-ne~~~f~v~~~---~~~l~i~V~d~~~~~~ 443 (782)
|.|+|++|+||++++. ..+. ||||+++++++.+||+++++++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d~--~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~- 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--SSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS- 77 (110)
T ss_pred CEEEEEEEECCCcccc--CCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-
Confidence 5799999999997752 2355 99999999999999999999999999 99999999863 368999999999876
Q ss_pred CCCCcCCCccEEEEEecccccC---CcEEEEEEEcee
Q 045512 444 SKDDAIDQRIGKVRIRLSTLET---DRLYTHYYPLLV 477 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 477 (782)
+|++||++.+++.++.. +..++.||+|.+
T Consensus 78 -----~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 -----ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred -----CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 78999999999999976 456889999964
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-16 Score=143.24 Aligned_cols=119 Identities=25% Similarity=0.397 Sum_probs=100.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CC
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KD 115 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d 115 (782)
+.|.|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.......|.|+|||++.. ++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 36899999999999999889999999999875 367999999999999999999998775567899999999988 89
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEccc
Q 045512 116 DFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQ 167 (782)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 167 (782)
++||++.++|.++.... +......|++|.. .|+|++.+.+...
T Consensus 81 ~~iG~~~i~l~~~~~~~--~~~~~~~w~~l~~-------~g~i~l~~~~~~~ 123 (126)
T cd04043 81 DLCGRASLKLDPKRFGD--DGLPREIWLDLDT-------QGRLLLRVSMEGE 123 (126)
T ss_pred ceEEEEEEecCHHHcCC--CCCCceEEEEcCC-------CCeEEEEEEEeee
Confidence 99999999999875432 1223578999964 1899988877643
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-16 Score=144.47 Aligned_cols=117 Identities=24% Similarity=0.381 Sum_probs=98.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCC-------CCCC-CcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEEEE
Q 045512 366 IGILELGILSAKNLMPMTSKD-------GKLT-DAYCVAKYGNKW-IRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVF 436 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~-------~~~~-dpyv~v~~~~~~-~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~ 436 (782)
.|.|+|+|++|+||.+.+... +.+. ||||++.++++. .+|++++++.||.|||.|+|.+.+ ...|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEEE
Confidence 488999999999999776410 1256 999999999865 699999999999999999999974 578999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccC--CcEEEEEEEceeeCCCCCccccEEEEEEEEEE
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLET--DRLYTHYYPLLVLTPSGLKKNGELHLALRFTC 497 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
|++.++ ++++||++.++|+++.. +.....|++|. +.|+|++++.+..
T Consensus 82 d~~~~~------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCC------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 998765 78999999999999987 56678999995 2599999988753
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=143.90 Aligned_cols=104 Identities=26% Similarity=0.323 Sum_probs=89.8
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC---EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN---KWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVF 436 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~---~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~ 436 (782)
...+.|.|+|++|+||++.+. .+. ||||++.+.+ ..+||++++++.||.|||.|.|.+... ...|.|+||
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~---~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~ 89 (124)
T cd08385 13 FQSNQLTVGIIQAADLPAMDM---GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVY 89 (124)
T ss_pred CCCCEEEEEEEEeeCCCCccC---CCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEE
Confidence 344789999999999997653 356 9999999843 468999999999999999999998742 458999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
|++.++ +|++||++.++|+++..+...++|++|.
T Consensus 90 d~d~~~------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 90 DFDRFS------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred eCCCCC------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 999876 7899999999999998888889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-16 Score=143.46 Aligned_cols=120 Identities=25% Similarity=0.403 Sum_probs=96.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC--
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGS-- 444 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~-- 444 (782)
.|+|+|++|++|+..|. .|. ||||++.++++..+|++++++.||.|||.|.|.+..+...|.|+|||+|....+
T Consensus 2 ~L~V~vi~a~~L~~~d~---~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAKDK---TGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCCCC---CCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 58999999999997653 356 999999999999999999999999999999999977667899999999852100
Q ss_pred ---CCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEE
Q 045512 445 ---KDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLAL 493 (782)
Q Consensus 445 ---~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 493 (782)
-..+++++||++.+++.++.... ..||+|......+ ...|+|.|++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCCC--CeEEECccCCCCC-cEeEEEEEEC
Confidence 00137999999999999986443 7899998654322 2368888763
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-16 Score=142.90 Aligned_cols=119 Identities=27% Similarity=0.363 Sum_probs=97.8
Q ss_pred ccEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-C
Q 045512 39 MHYLFVNVVKARNLPVMD-VSGSLDPYVEVKLGN--YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-K 114 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~--~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~ 114 (782)
+|.|.|+|++|++|+..+ ..+.+||||++++++ ..++|+++.++.||+|||.|.|.+.. ....|.|+|||++.. +
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence 478999999999999755 356799999999998 78999999999999999999999884 468999999999988 9
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 115 DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
|++||++.+++.++..+... ...|+.+. .+++ . .|+|++++.|.
T Consensus 80 d~~iG~~~~~l~~l~~~~~~----~~~~~~~~-~~~k-~-~G~i~~~l~~~ 123 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQ----ENLTKNLL-RNGK-P-VGELNYDLRFF 123 (124)
T ss_pred CceeEEEEEEHHHhccCccc----cCcchhhh-cCCc-c-ceEEEEEEEeC
Confidence 99999999999999876431 12344444 2333 2 39999999764
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-16 Score=146.05 Aligned_cols=108 Identities=24% Similarity=0.422 Sum_probs=91.4
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccC-CCCeEEEE
Q 045512 42 LFVNVVKARNLPVMDVS--------------GSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERL-QSNLVEVT 106 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~--------------g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~-~~~~L~v~ 106 (782)
|.|+|++|++|+.+|.. +.+||||+|.+++++.+|++++++.||+|||+|.|.+..+ ....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999998844 3789999999999999999999999999999999987533 35689999
Q ss_pred EEeCCCC-CCceeEEEEEEccccCCCCCCC--CCCCCeEEEeecCC
Q 045512 107 VKDKDIG-KDDFVGRVTFDLFEVPHRVPPD--SPLAPQWYRLEDRK 149 (782)
Q Consensus 107 V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~--~~~~~~w~~L~~~~ 149 (782)
|||+|.. +|++||++.+++.++....... ....++|+.|.+..
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 9999998 9999999999999987643210 12467999997654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-16 Score=146.94 Aligned_cols=101 Identities=30% Similarity=0.541 Sum_probs=89.5
Q ss_pred cccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------eeeeccccCCCCCe
Q 045512 36 VEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-----------------------------KGIAKHLEKNQNPV 86 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-----------------------------~~~T~~i~~t~nP~ 86 (782)
.++.+.|.|+|++|+||+.+|..|.+||||+|.+++. .++|+++.+|+||+
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 4577899999999999999999999999999999641 36899999999999
Q ss_pred eccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 045512 87 WNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145 (782)
Q Consensus 87 wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (782)
|||+|.|.+..+....|.|+|||++ +++||++.+++.++... ..+.||+|
T Consensus 104 WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~------~~d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC------GLDSWFKL 153 (153)
T ss_pred cccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCC------CCCCeEeC
Confidence 9999999998766789999999998 89999999999999832 25899987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-16 Score=143.08 Aligned_cols=106 Identities=22% Similarity=0.288 Sum_probs=89.3
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeCC---CceEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIG 434 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~ 434 (782)
+..+.|.|+|++|+||++.+. .+. ||||++.+. ....||++++++.||+|||.|.|.+... ...|.|.
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~---~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~ 89 (127)
T cd04030 13 SQRQKLIVTVHKCRNLPPCDS---SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVA 89 (127)
T ss_pred CCCCEEEEEEEEEECCCCccC---CCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEE
Confidence 334789999999999997753 355 999999985 4678999999999999999999998642 4689999
Q ss_pred EEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 435 VFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 435 V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
|||++.+. .++|++||.+.|+|.++..+.....||+|.
T Consensus 90 v~~~~~~~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 90 VKNSKSFL----SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred EEECCccc----CCCCceEEEEEEecccccccCCccceEECc
Confidence 99998641 127899999999999998888889999984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-16 Score=147.91 Aligned_cols=119 Identities=21% Similarity=0.392 Sum_probs=95.6
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~-- 97 (782)
|.+.+++.|.. ..+.|.|+|++|++|+..|..|.+||||++++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 1 G~i~~~l~y~~--~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~ 78 (135)
T cd08410 1 GELLLSLNYLP--SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEE 78 (135)
T ss_pred CcEEEEEEECC--CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHH
Confidence 56788888886 4579999999999999999889999999999832 35789999999999999999999843
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD 151 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (782)
.....|.|+|||++.. ++++||++.+........ ...+|+.|....+.
T Consensus 79 l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~------~~~~W~~l~~~~~~ 127 (135)
T cd08410 79 LENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPS------ETNHWRRMLNSQRT 127 (135)
T ss_pred hCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCch------HHHHHHHHHhCCCC
Confidence 3445799999999988 999999998664332221 14678888766544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-16 Score=144.78 Aligned_cols=106 Identities=29% Similarity=0.396 Sum_probs=92.7
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeccccCCCCCeeccEEEEEec
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-------YKGIAKHLEKNQNPVWNQIFAFSKE 96 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~i~~t~nP~wne~f~f~~~ 96 (782)
+|...+++.|+. ....|.|+|++|++|+..+..|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+.
T Consensus 2 ~G~l~~~l~y~~--~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~ 79 (133)
T cd04009 2 YGVLTVKAYYRA--SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVP 79 (133)
T ss_pred ceEEEEEEEEcC--CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEec
Confidence 466778888877 5569999999999999998889999999999963 4789999999999999999999976
Q ss_pred cC----CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCC
Q 045512 97 RL----QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHR 131 (782)
Q Consensus 97 ~~----~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~ 131 (782)
.. ....|.|+|||++.. ++++||++.++|.++..-
T Consensus 80 ~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 80 PEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred hhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 42 356899999999998 799999999999999853
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-16 Score=139.70 Aligned_cols=107 Identities=27% Similarity=0.389 Sum_probs=93.5
Q ss_pred CceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeecccccCCCCCCcccceeEEEecCCC----CCeEEEEEEEcc
Q 045512 199 PKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPF----EDLIIVTVEDRI 274 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~----~~~L~i~V~d~d 274 (782)
|+.+.|+|+|++|++|+ .+.+||||+++++++..+|+++++ +.||.|||+|.|.+..+. ...|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 46788999999999998 577999999999999999999886 999999999999975443 457999999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 275 GPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
..+++++||++.++++++... ..+....+|++|..+
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~~ 111 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccccCCccEEEEECCccccCC--CCCcceEEEEEeeCc
Confidence 888899999999999999865 456678999999753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.3e-16 Score=141.14 Aligned_cols=113 Identities=25% Similarity=0.357 Sum_probs=97.2
Q ss_pred EEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCc
Q 045512 373 ILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVFDNCHVNGSKDDA 448 (782)
Q Consensus 373 v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~d~~~~~~~~~~~ 448 (782)
|++|++|+. ..|. ||||++.+++..++|++++++.||+|||.|.|++.++ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------ 70 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------ 70 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------
Confidence 689999985 2356 9999999999999999999999999999999999753 568999999999865
Q ss_pred CCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEEEC
Q 045512 449 IDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTCT 498 (782)
Q Consensus 449 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 498 (782)
+|++||++.++++++..+.....|++|.... +....|+|+++++|.+.
T Consensus 71 ~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 71 RNRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPP 118 (127)
T ss_pred CCceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCC
Confidence 7899999999999999888889999997543 22235899999988654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-16 Score=147.52 Aligned_cols=119 Identities=33% Similarity=0.413 Sum_probs=99.3
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc-
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER- 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~- 97 (782)
+|.+.++++|+. ..+.|.|+|++|+||+..|..|.+||||++++.+ .+.+|++++++.||+|||+|.|.+..
T Consensus 1 ~G~l~~~l~y~~--~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~ 78 (136)
T cd08404 1 RGELLLSLCYQP--TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSE 78 (136)
T ss_pred CCeEEEEEEEeC--CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHH
Confidence 367889999976 4568999999999999999899999999999953 25789999999999999999999753
Q ss_pred -CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 045512 98 -LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD 151 (782)
Q Consensus 98 -~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (782)
.....|.|+|||++.+ ++++||++.+++.. . .. ...+|+.|....++
T Consensus 79 ~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~-~~-----~~~~w~~l~~~~~~ 127 (136)
T cd08404 79 ELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA-S-GS-----GGHHWKEVCNPPRR 127 (136)
T ss_pred HhCCCEEEEEEEECCCCCCCccEEEEEECCcC-C-Cc-----hHHHHHHHHhCCCC
Confidence 3456799999999998 99999999999988 2 11 25789888765544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-16 Score=138.21 Aligned_cols=102 Identities=23% Similarity=0.423 Sum_probs=91.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCceeE
Q 045512 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILG 283 (782)
Q Consensus 204 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG 283 (782)
|.|+|++|++|+..+..+.+||||+++++++..+|+++++ +.||.|||.|.|.+..+..+.|.|+|+|++. +++||
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 7899999999999988899999999999999999999886 9999999999999988777889999999875 88999
Q ss_pred EEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 284 REFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 284 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
++.++|.++... .....++||+|.+.
T Consensus 78 ~~~i~l~~l~~~---~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKE---PDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhcc---ccceeeeeEecCCC
Confidence 999999998853 24457899999865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-16 Score=144.64 Aligned_cols=118 Identities=19% Similarity=0.317 Sum_probs=96.8
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeccccCCCCCeeccEEEEEec--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGIAKHLEKNQNPVWNQIFAFSKE-- 96 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~i~~t~nP~wne~f~f~~~-- 96 (782)
|++.+++.|+.. .+.|.|+|++|+||+..+..|.+||||++.+.+ .++||++++++.||+|||+|.|.+.
T Consensus 2 ~ei~~sL~Y~~~--~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~ 79 (138)
T cd08408 2 PELLLGLEYNAL--TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALF 79 (138)
T ss_pred CeEEEEeEEcCC--CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHH
Confidence 467888898884 469999999999999999899999999999953 2569999999999999999999986
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 97 RLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 97 ~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
++....|.|.|||.+.+ ++++||++.+++...-.. ...+|+.+....+
T Consensus 80 ~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~------~~~hW~~~l~~~~ 128 (138)
T cd08408 80 QLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEE------EEEHWNEMKESKG 128 (138)
T ss_pred HhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCch------HHHHHHHHHhCCC
Confidence 35567999999999988 999999999987644321 1346777755443
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-16 Score=146.57 Aligned_cols=115 Identities=27% Similarity=0.447 Sum_probs=95.4
Q ss_pred eeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc--CCC
Q 045512 28 KTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER--LQS 100 (782)
Q Consensus 28 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~--~~~ 100 (782)
.+++.|+. ..+.|.|+|++|+||+..+..|.+||||+|.+.+ .+++|++++++.||+|||+|.|.+.. +..
T Consensus 3 ~~~l~y~~--~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 3 LVSLMYNT--QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred EEEEEEcC--CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 46677766 5679999999999999999889999999999963 36799999999999999999999754 345
Q ss_pred CeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 045512 101 NLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD 151 (782)
Q Consensus 101 ~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (782)
..|.|+|||++.. ++++||++.+++..... ...+|+++....+.
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~-------~~~~W~~~l~~~~~ 125 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAKGE-------RLRHWLDCLKNPDK 125 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCCCc-------hHHHHHHHHhCCCC
Confidence 7899999999988 89999999999975211 24678888665443
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=140.35 Aligned_cols=103 Identities=29% Similarity=0.472 Sum_probs=87.1
Q ss_pred eEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCC---CCCeEEEEEEE
Q 045512 201 LYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEP---FEDLIIVTVED 272 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~V~d 272 (782)
.+.|+|+|++|++|+..+..+.+||||++.+.+ +..+|+++++ +.||.|||+|.|.+... ....|.|+|||
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 346999999999999999889999999999974 5778999886 99999999999986432 35679999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEcc
Q 045512 273 RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLH 310 (782)
Q Consensus 273 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 310 (782)
++..+++++||++.++|++... + ....||+|+
T Consensus 94 ~~~~~~~~~iG~~~i~l~~~~~---~---~~~~W~~L~ 125 (125)
T cd04031 94 YDRDGENDFLGEVVIDLADALL---D---DEPHWYPLQ 125 (125)
T ss_pred CCCCCCCcEeeEEEEecccccc---c---CCcceEECc
Confidence 9998899999999999998332 1 246899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=140.14 Aligned_cols=104 Identities=23% Similarity=0.312 Sum_probs=88.7
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE---CCEEEeeccccCCCCCccccEEEEEEeC----CCceEEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKY---GNKWIRTRTILDTLDPRWNEQYTWEVYD----PCTVITIGV 435 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~---~~~~~~T~~~~~t~nP~wne~~~f~v~~----~~~~l~i~V 435 (782)
+..+.|.|+|++|+||+.++. .+. ||||++.+ ++...+|++++++.||.|||.|.|.+.. ....|.++|
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~---~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v 89 (125)
T cd08386 13 FQESTLTLKILKAVELPAKDF---SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQV 89 (125)
T ss_pred CCCCEEEEEEEEecCCCCccC---CCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEE
Confidence 334789999999999987653 356 99999998 3467899999999999999999998532 235799999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
||++.++ ++++||++.++++++..+...+.|++|.
T Consensus 90 ~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 90 LDYDRFS------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EeCCCCc------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999876 7899999999999999888889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=9e-16 Score=140.13 Aligned_cols=117 Identities=27% Similarity=0.349 Sum_probs=92.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-CEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYG-NKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~ 446 (782)
|+|+|++|+||+.++. .+. ||||++.++ .+.+||+++++++||.|||.|+|.+.. ...|.|+|||++.++
T Consensus 2 l~v~v~~A~~L~~~~~---~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~---- 73 (123)
T cd08382 2 VRLTVLCADGLAKRDL---FRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK---- 73 (123)
T ss_pred eEEEEEEecCCCccCC---CCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC----
Confidence 7899999999997653 356 999999996 678999999999999999999999975 679999999998764
Q ss_pred CcCCCccEEEEEecccccCCc-EEEEEEEceeeCCCC-CccccEEEEEE
Q 045512 447 DAIDQRIGKVRIRLSTLETDR-LYTHYYPLLVLTPSG-LKKNGELHLAL 493 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~g-~~~~G~i~l~~ 493 (782)
...|++||++.++++++.... ....||+|....... ..-.|+|.+++
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 112689999999999986543 236699997654421 12257777654
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=139.74 Aligned_cols=104 Identities=21% Similarity=0.326 Sum_probs=88.2
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCC---CceEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIG 434 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~ 434 (782)
+..+.|.|+|++|+||++++. ..+. ||||++.+.+ ...+|++++++.||+|||.|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~--~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADE--KKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCC--CCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 345889999999999998751 2356 9999998832 468999999999999999999998752 4589999
Q ss_pred EEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEc
Q 045512 435 VFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475 (782)
Q Consensus 435 V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 475 (782)
|||++.++ ++++||++.++|+++..+...+.||+|
T Consensus 89 v~d~~~~~------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFG------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCc------CCceeeEEEEecccccccCCCccEEEC
Confidence 99999776 789999999999999777777999987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-16 Score=140.68 Aligned_cols=94 Identities=29% Similarity=0.361 Sum_probs=83.4
Q ss_pred cccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEecc-CCCCeEEEEEEeCCCC-
Q 045512 36 VEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKER-LQSNLVEVTVKDKDIG- 113 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~-~~~~~L~v~V~d~d~~- 113 (782)
...++.|.|+|++|++|+. +..+.+||||+|++++++++|++++++.||+|||+|.|.... .....|.|+|||++..
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 3456899999999999985 667899999999999999999999999999999999997433 3468999999999998
Q ss_pred CCceeEEEEEEccccCC
Q 045512 114 KDDFVGRVTFDLFEVPH 130 (782)
Q Consensus 114 ~d~~lG~~~i~l~~l~~ 130 (782)
+|++||++.++|.....
T Consensus 103 ~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 103 DDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCeeEEEEEEecCCce
Confidence 99999999999997664
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-16 Score=144.11 Aligned_cols=92 Identities=38% Similarity=0.506 Sum_probs=85.6
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 045512 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDF 117 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~ 117 (782)
.|.|+|+|++|+||+..+. +.+||||++++++++.+|++++++.||+|||+|.|.+.++ ...|.|+|||++.+ +|++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCE
Confidence 3789999999999999887 8999999999999999999999999999999999999876 68899999999998 8999
Q ss_pred eEEEEEEccccCCCC
Q 045512 118 VGRVTFDLFEVPHRV 132 (782)
Q Consensus 118 lG~~~i~l~~l~~~~ 132 (782)
||++.+++.++....
T Consensus 79 iG~a~i~l~~l~~~~ 93 (145)
T cd04038 79 MGEAEIDLEPLVEAA 93 (145)
T ss_pred EEEEEEEHHHhhhhh
Confidence 999999999998653
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.6e-16 Score=142.48 Aligned_cols=102 Identities=24% Similarity=0.365 Sum_probs=88.4
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEec--c
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKE--R 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~--~ 97 (782)
|.+.+++.|+.. .+.|.|+|++|+||+..+ .+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+. +
T Consensus 2 G~i~~sl~y~~~--~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 2 GDIQISLTYNPT--LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred cEEEEEEEECCC--CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 667899999874 469999999999999988 88899999999864 3668999999999999999999985 3
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccC
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVP 129 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~ 129 (782)
+....|.|+|||.+.. ++++||++.+......
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccC
Confidence 4557899999999988 9999999999865444
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.4e-16 Score=169.23 Aligned_cols=178 Identities=19% Similarity=0.308 Sum_probs=145.1
Q ss_pred hhhHHHHHHHHHH---HHHHHhhhccccCCchhhHHHHHHHHHHHHcCch--hHHHHHHHHHHHHhhcccc-CCCCCCCC
Q 045512 569 SKANFQRIMELFS---AICRWFNDICTWRNPVETVLLHVLFLILVFYPEL--ILPTIFLYLFLIGMWNYRF-RPRHPPQV 642 (782)
Q Consensus 569 ~~~n~~rl~~~~~---~~~~~~~~~~~W~~p~~s~~~~~~~~~~~~~~~l--~~p~~~l~l~~~~~~~~~~-~~~~p~~~ 642 (782)
.-+|+..+++++. .++.+++.+.+|++|.+|+.+++++.+++|..|+ ++|+++++++++|+|.... +.+.
T Consensus 485 I~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~---- 560 (683)
T PF04842_consen 485 IDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLGK---- 560 (683)
T ss_pred CccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC----
Confidence 4589999999999 9999999999999999999999999999999887 8999999999999996554 3221
Q ss_pred CCcccccccccccccccccCCCcccccccCCCCCCCChHHHHHHHHHHHHhHhhHHHHHHHHhhHHHHHhhhhcccCchh
Q 045512 643 DAKLSQAINAHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQAILCWRDLRA 722 (782)
Q Consensus 643 ~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~ 722 (782)
.-++.....++... .++++-++|+.+.++++.|+.++.++.|+|.++.|..|.+
T Consensus 561 ------------------------~~~~v~V~~pP~~n--TvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~Pqa 614 (683)
T PF04842_consen 561 ------------------------SFGEVTVRDPPPKN--TVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQA 614 (683)
T ss_pred ------------------------ccceEEecCCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 12222222233333 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhhhhh-hccCCCCCCCCCC----cchhhhccCCC
Q 045512 723 TFIFLIFSFIWAVFSYVTPFQVVAVLIGLY-MLRHPRFRSKMPS----VPVNFFKSFPS 776 (782)
Q Consensus 723 s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~-~lr~P~~~~~~~~----~~~~~~~r~ps 776 (782)
|..++++++++|+++.++|+||++++..+. +-|+=.+|+.+.. .+-.+|-++|.
T Consensus 615 T~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~s~er~~RRlrEWW~sIPA 673 (683)
T PF04842_consen 615 TNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRRESSERFNRRLREWWDSIPA 673 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhCCc
Confidence 999999999999999999999999998877 3333335553322 34555666663
|
|
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=142.34 Aligned_cols=117 Identities=30% Similarity=0.454 Sum_probs=96.4
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeccccCCCCCeeccEEEEEec--c
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLG--N---YKGIAKHLEKNQNPVWNQIFAFSKE--R 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~i~~t~nP~wne~f~f~~~--~ 97 (782)
|+..+++.|+.. .+.|.|+|++|+||+..+..|.+||||+|++. + .+++|++++++.||+|||+|.|.+. .
T Consensus 2 G~l~~sl~y~~~--~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 2 GELLLSLCYNPT--ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred cEEEEEEEEcCC--CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 677889999874 56899999999999999888999999999983 2 3578999999999999999999875 3
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
.....|.|+|||++.. ++++||++.+++.+... ....|+++....+
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~-------~~~~w~~~~~~~~ 126 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGL-------ELKHWKDMLSKPR 126 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccCCc-------hHHHHHHHHhCCC
Confidence 3456899999999988 89999999999987521 1456666655443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-16 Score=146.03 Aligned_cols=117 Identities=28% Similarity=0.333 Sum_probs=96.3
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~-- 97 (782)
|+..+++.|+. ..+.|.|+|++|++|+.++..|.+||||+|++++ .+++|++++++.||+|||+|.|.+..
T Consensus 2 G~l~~~l~y~~--~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 79 (136)
T cd08402 2 GDICFSLRYVP--TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ 79 (136)
T ss_pred cEEEEEeEEcC--CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHH
Confidence 56788888887 5579999999999999999899999999999953 35789999999999999999999753
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
.....|.|+|||++.+ ++++||++.+++..... ...+|+++....+
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~-------~~~~W~~~~~~~~ 126 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGA-------ELRHWSDMLASPR 126 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccCCh-------HHHHHHHHHhCCC
Confidence 3345899999999998 89999999999975321 1457777765443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=140.99 Aligned_cols=115 Identities=33% Similarity=0.501 Sum_probs=100.3
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccC-
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERL- 98 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~- 98 (782)
|.+.++++|+. +.|.|+|++|++|+..+..+.+||||+|.+.+ .+++|+++.++.||.|||+|.|.+...
T Consensus 2 g~~~~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~ 77 (131)
T cd04026 2 GRIYLKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD 77 (131)
T ss_pred cEEEEEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh
Confidence 56778887777 68999999999999988889999999999964 578999999999999999999997653
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
....|.|.|||++.. ++++||++.+++.++... ....||+|.+.+
T Consensus 78 ~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~------~~~~w~~L~~~~ 123 (131)
T cd04026 78 KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM------PVDGWYKLLNQE 123 (131)
T ss_pred cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC------ccCceEECcCcc
Confidence 346899999999988 899999999999999854 257899998765
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.4e-16 Score=143.48 Aligned_cols=103 Identities=26% Similarity=0.341 Sum_probs=86.8
Q ss_pred EEEEEEEeeCCCCCCCCC-----------CCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC--CceEEEE
Q 045512 369 LELGILSAKNLMPMTSKD-----------GKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP--CTVITIG 434 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~-----------~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~--~~~l~i~ 434 (782)
|.|+|++|++|+++|... ..+. ||||+|.+++++.||++++++.||+|||+|.|++..+ ...|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999987431 1245 9999999999999999999999999999999998654 5689999
Q ss_pred EEeCCCCCCCCCCcCCCccEEEEEecccccCCcE-------EEEEEEcee
Q 045512 435 VFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRL-------YTHYYPLLV 477 (782)
Q Consensus 435 V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-------~~~~~~L~~ 477 (782)
|||+|..+ +|++||++.|+++++..... -.+|+.|.+
T Consensus 82 v~D~d~~~------~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 82 IRDWDRVG------NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEECCCCC------CCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 99999876 89999999999999865442 246777764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-15 Score=140.02 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=95.0
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE--C---CeeeeeccccCCCCCeeccEEEEEeccC--------CCCeEEEE
Q 045512 42 LFVNVVKARN--LPVMDVSGSLDPYVEVKL--G---NYKGIAKHLEKNQNPVWNQIFAFSKERL--------QSNLVEVT 106 (782)
Q Consensus 42 L~V~v~~a~~--L~~~d~~g~~dPyv~v~~--~---~~~~~T~~i~~t~nP~wne~f~f~~~~~--------~~~~L~v~ 106 (782)
..++|+.|++ |+..+..+.+||||++++ . .++.||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4567777777 677777889999999997 2 3689999999999999999999998643 24679999
Q ss_pred EEeCCCC--CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 107 VKDKDIG--KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 107 V~d~d~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
|||++.+ +|++||++.++|..+..+.. ...|++|.+ |.+...|+|.+.+...
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~-----~~~~~~L~~--~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCE-----IHESVDLMD--GRKATGGKLEVKVRLR 137 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCc-----ceEEEEhhh--CCCCcCCEEEEEEEec
Confidence 9999986 79999999999999977542 557999975 3333349999998765
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=138.04 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=87.0
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC---CEEEeeccccCCCCCccccEEEEE-EeC---CCceEEEEEE
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG---NKWIRTRTILDTLDPRWNEQYTWE-VYD---PCTVITIGVF 436 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~~~~T~~~~~t~nP~wne~~~f~-v~~---~~~~l~i~V~ 436 (782)
..+.|.|+|++|+||++.+. .|. ||||++.+. .++.||+++++ .||+|||.|.|+ +.. ....|.|.||
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~---~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDR---GGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred CCCEEEEEEEEecCCCchhc---CCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 34789999999999997753 356 999998773 35789999888 999999999998 542 2558999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
|++.++ ++++||.+.|+|+++..+.....||+|.
T Consensus 90 ~~~~~~------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 90 GVERMR------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ECCCcc------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 999876 8999999999999998888889999985
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=139.19 Aligned_cols=104 Identities=28% Similarity=0.369 Sum_probs=92.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEeccC---CCCeEEEEEEeCCCC-C
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEK-NQNPVWNQIFAFSKERL---QSNLVEVTVKDKDIG-K 114 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~-t~nP~wne~f~f~~~~~---~~~~L~v~V~d~d~~-~ 114 (782)
|.|.|+|++|++|+..+..+.+||||+|+++++.++|+++.+ +.||+|||+|.|.+... ....|.|+|||.+.+ +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999999888899999999999999889999885 89999999999998875 257899999999988 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 045512 115 DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDR 148 (782)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
+++||++.+++.++..+.. .+.|++|.+.
T Consensus 81 d~~iG~~~i~l~~l~~~~~-----~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGV-----EPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCC-----CcCceEeecc
Confidence 9999999999999987432 5788888764
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=141.74 Aligned_cols=102 Identities=26% Similarity=0.430 Sum_probs=90.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeeeccccCCCCCeeccEEEEEeccC---------------CCCe
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLG----NYKGIAKHLEKNQNPVWNQIFAFSKERL---------------QSNL 102 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~----~~~~~T~~i~~t~nP~wne~f~f~~~~~---------------~~~~ 102 (782)
|.|+|++|++|+.+ ..|.+||||+|+++ +++++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78999999999998 6789999999999999999999997664 4578
Q ss_pred EEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 103 VEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 103 L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
|.|+|||++.. ++++||++.+++.++.... ....||+|....
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAG-----SHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCC-----cccceEecCCcC
Confidence 99999999998 9999999999999988543 257999998876
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-15 Score=139.31 Aligned_cols=116 Identities=22% Similarity=0.283 Sum_probs=90.9
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCC-CcEEEEEE-----CCEEEeeccccCCCCCccccEEEEEEeCC---------CceE
Q 045512 369 LELGILSAKN--LMPMTSKDGKLT-DAYCVAKY-----GNKWIRTRTILDTLDPRWNEQYTWEVYDP---------CTVI 431 (782)
Q Consensus 369 l~v~v~~a~~--L~~~~~~~~~~~-dpyv~v~~-----~~~~~~T~~~~~t~nP~wne~~~f~v~~~---------~~~l 431 (782)
..++|..|+| |+..+ ..+. ||||++++ +.++.||+++++|+||+|||+|.|.|... ...|
T Consensus 4 ~el~i~~~~~~~l~~~~---~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSGW---NPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCCc---CCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 3455666666 55443 3456 99999987 34689999999999999999999999654 3469
Q ss_pred EEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 432 TIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 432 ~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.|+|||++.+. .+|++||++.++|+.+..+.....|++|...+ ...+|+|+++++.
T Consensus 81 ~~~V~d~~~f~-----~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~---k~~Gg~l~v~ir~ 136 (155)
T cd08690 81 KFEVYHKGGFL-----RSDKLLGTAQVKLEPLETKCEIHESVDLMDGR---KATGGKLEVKVRL 136 (155)
T ss_pred EEEEEeCCCcc-----cCCCeeEEEEEEcccccccCcceEEEEhhhCC---CCcCCEEEEEEEe
Confidence 99999998763 17999999999999998877778899987421 1236999999986
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=140.69 Aligned_cols=117 Identities=23% Similarity=0.304 Sum_probs=95.0
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~-- 97 (782)
|...+++.|+. ..+.|+|+|++|++|+..+..|.+||||+|++.+ .+++|++++++.||+|||+|.|.+..
T Consensus 1 g~l~~~~~y~~--~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 78 (134)
T cd08403 1 GELMFSLCYLP--TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPEN 78 (134)
T ss_pred CeEEEEEEEcC--CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHH
Confidence 56788999987 5679999999999999999899999999999852 36789999999999999999998753
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
.....|.|+|||++.. ++++||++.+++..... ....|+.+....+
T Consensus 79 ~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~-------~~~~w~~~~~~~~ 125 (134)
T cd08403 79 VDNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQ-------GREHWNEMLANPR 125 (134)
T ss_pred hCCCEEEEEEEECCCCCCCceeEEEEECCCCCCc-------hHHHHHHHHHCCC
Confidence 3345799999999998 89999999998763221 1346666655444
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=139.19 Aligned_cols=120 Identities=24% Similarity=0.470 Sum_probs=98.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeecccccCCCCCCcccceeEEEecCC---------CCCeEEEEEEEc
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEP---------FEDLIIVTVEDR 273 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~---------~~~~L~i~V~d~ 273 (782)
+|+|+|++|++|+..+..|.+||||++.++++..+|+++++ +.||.|||.|.|.+... ....|.|+|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 68999999999999999999999999999999999999987 99999999999975322 124699999999
Q ss_pred cCCCCCceeEEEEEe-CCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEe
Q 045512 274 IGPGKDEILGREFIP-VRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCL 337 (782)
Q Consensus 274 d~~~~d~~lG~~~i~-l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~ 337 (782)
+..++|++||++.+. +..+... .......+|++|.... ...|+|.+.+.+
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~------------~~~Geil~~~~~ 131 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGG------------QSAGELLAAFEL 131 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCC------------CchhheeEEeEE
Confidence 999999999999974 4334322 3455788999997543 356888887754
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=138.16 Aligned_cols=106 Identities=22% Similarity=0.190 Sum_probs=87.2
Q ss_pred EEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC---CeeeecccccCCCCCCcccceeEEE-ecC--CCCCeEEEEEEEcc
Q 045512 202 YYLRVFVFEAQDLVPSEEG-RAPDAYVKIQLG---NLVRVTRPSHVRSVNPVWNEEHMFV-ASE--PFEDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~-g~~dpyv~v~lg---~~~~kT~~~~~~t~nP~wne~f~f~-v~~--~~~~~L~i~V~d~d 274 (782)
..|+|+|++|++|+..+.. +.+||||++.+. .+..||+++++ +.||.|||+|.|. +.. .....|.++|||++
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 3699999999999998876 889999999986 35678999887 9999999999993 432 22346999999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccC
Q 045512 275 GPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHK 311 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 311 (782)
..+++++||++.++|+++... +......|++|++
T Consensus 95 ~~~~d~~lG~~~i~L~~l~~~---~~~~~~~~~~~~~ 128 (128)
T cd08388 95 RYSRDDVIGEVVCPLAGADLL---NEGELLVSREIQP 128 (128)
T ss_pred CCCCCceeEEEEEeccccCCC---CCceEEEEEeccC
Confidence 999999999999999998653 1234778888763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-15 Score=137.60 Aligned_cols=117 Identities=23% Similarity=0.370 Sum_probs=95.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eeeeeccccCCCCCee-ccEEEEEeccCCCCeEEEE
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-------------YKGIAKHLEKNQNPVW-NQIFAFSKERLQSNLVEVT 106 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------------~~~~T~~i~~t~nP~w-ne~f~f~~~~~~~~~L~v~ 106 (782)
...|++++|+||+ ++..|++||||++.+.+ ++++|+++++|+||+| ||+|.|.+.. ...|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 3579999999998 67789999999999953 3689999999999999 9999999854 4689999
Q ss_pred EEeCCCC-C---CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEE
Q 045512 107 VKDKDIG-K---DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAV 162 (782)
Q Consensus 107 V~d~d~~-~---d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 162 (782)
|||++.. + +++||++.+++.++..... .....+||+|+.........|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~--~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHA--IGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhccccc--CCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9998754 2 7999999999999976532 223678999987664443449998865
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=139.39 Aligned_cols=91 Identities=26% Similarity=0.333 Sum_probs=77.0
Q ss_pred ceEEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEE
Q 045512 200 KLYYLRVFVFEAQDLVPSEE--GRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTV 270 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~d~--~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V 270 (782)
..+.|.|.|++|+||..++. .+.+||||++++.. .+.||+++++ +.||+|||.|.|.+... .+..|.|+|
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V 91 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELEV 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEEE
Confidence 34469999999999999883 34589999999974 2457888876 99999999999998643 256799999
Q ss_pred EEccCCCCCceeEEEEEeCCC
Q 045512 271 EDRIGPGKDEILGREFIPVRN 291 (782)
Q Consensus 271 ~d~d~~~~d~~lG~~~i~l~~ 291 (782)
||+|.++++++||++.+++..
T Consensus 92 ~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 92 LNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EeCCCCcCcceeceEEecCcC
Confidence 999999999999999999965
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=143.89 Aligned_cols=104 Identities=21% Similarity=0.322 Sum_probs=88.6
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeCC----CceEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLDPRWNEQYTWEVYDP----CTVITI 433 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~~~f~v~~~----~~~l~i 433 (782)
...|.|.|+|++|+||++.+. .+. ||||++.+. ...+||++++++.||.|||.|.|.+..+ ...|.|
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~---~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i 100 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKS---GGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLEL 100 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCC---CCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEE
Confidence 467999999999999997753 366 999999882 3578999999999999999999986432 357999
Q ss_pred EEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 434 GVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 434 ~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
+|||++.++ +|++||++.+++.++.......+|+++.
T Consensus 101 ~V~d~d~~~------~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 101 TVWDHDKLS------SNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred EEEeCCCCC------CCceEEEEEEeCCccccCCCccccccCC
Confidence 999999876 7999999999999997766678899885
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=136.30 Aligned_cols=112 Identities=33% Similarity=0.505 Sum_probs=96.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCceeE
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFVG 119 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~lG 119 (782)
|+|+|++|++|+..+..+.+||||+|.+++ ..++|+++.++.||.|||+|.|.+.......+.|+|||++.. ++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999998888999999999986 457999999999999999999998775568899999999988 899999
Q ss_pred EEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEE
Q 045512 120 RVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIML 160 (782)
Q Consensus 120 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l 160 (782)
++.+++.++..+.. ...|++|.+.++.. .|.|.+
T Consensus 81 ~~~~~l~~l~~~~~-----~~~~~~L~~~g~~~--~~~~~~ 114 (115)
T cd04040 81 SAYIDLSDLEPEET-----TELTLPLDGQGGGK--LGAVFL 114 (115)
T ss_pred EEEEEHHHcCCCCc-----EEEEEECcCCCCcc--CceEEc
Confidence 99999999987532 57899998765433 277653
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-15 Score=136.41 Aligned_cols=119 Identities=24% Similarity=0.367 Sum_probs=100.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCC
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN---LVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKD 279 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d 279 (782)
.|+|+|++|++|+..+..+.+||||++.+++ +..+|+++++ +.||.|||+|.|.+.......|.|+|||++..+++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 5899999999999999989999999999864 4679999886 99999999999999876567899999999988899
Q ss_pred ceeEEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccc
Q 045512 280 EILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAG 340 (782)
Q Consensus 280 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~ 340 (782)
++||++.++++.+... ++......|++|.+. |++++++++++.
T Consensus 81 ~~iG~~~i~l~~~~~~--~~~~~~~~w~~l~~~----------------g~i~l~~~~~~~ 123 (126)
T cd04043 81 DLCGRASLKLDPKRFG--DDGLPREIWLDLDTQ----------------GRLLLRVSMEGE 123 (126)
T ss_pred ceEEEEEEecCHHHcC--CCCCCceEEEEcCCC----------------CeEEEEEEEeee
Confidence 9999999999876532 214456789999753 889998887653
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=135.82 Aligned_cols=106 Identities=20% Similarity=0.230 Sum_probs=89.4
Q ss_pred CceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEE
Q 045512 199 PKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN------LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTV 270 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~------~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V 270 (782)
+..+.|.|+|++|+||+..+..+.+||||++++.. ...+|+++++ +.||+|||+|.|.+... ....|.|+|
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~~~~L~~~V 89 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLYQKTLQVDV 89 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhhcCEEEEEE
Confidence 34457999999999999998888999999999852 3688998886 99999999999998643 356899999
Q ss_pred EEccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEc
Q 045512 271 EDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNL 309 (782)
Q Consensus 271 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 309 (782)
||++..+++++||.+.|+|+++... .....+||+|
T Consensus 90 ~~~~~~~~~~~lG~~~i~L~~~~~~----~~~~~~Wy~l 124 (124)
T cd08680 90 CSVGPDQQEECLGGAQISLADFESS----EEMSTKWYNL 124 (124)
T ss_pred EeCCCCCceeEEEEEEEEhhhccCC----CccccccccC
Confidence 9999889999999999999998632 2247789876
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-15 Score=135.94 Aligned_cols=118 Identities=22% Similarity=0.271 Sum_probs=95.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~l 118 (782)
+|.|+|++|+ |...+..+.+||||+|+++++ .++|+++.+|.||+|||+|.|.+.. ...|.|+|||++.. ++++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence 6899999999 555555789999999999987 8999999999999999999999865 57899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCC--CCcccceEEEEEE
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK--GDKITQGEIMLAV 162 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~~G~l~l~~ 162 (782)
|++.++|.++.............|++|..++ +.... |+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKV-GELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceee-eeEEEEe
Confidence 9999999999875432222233589997554 11233 9988764
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-15 Score=135.16 Aligned_cols=104 Identities=23% Similarity=0.377 Sum_probs=92.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDF 117 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~ 117 (782)
|.|+|+|++|++|+..+..+.+||||+|.+++ ..++|+++.++.||+|||+|.|.+... ...|.|+|||++.. +|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 57999999999999998889999999999987 478999999999999999999988764 47899999999998 8999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 118 VGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 118 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
||++.+++.++.... ...||.|.+.+.
T Consensus 80 IG~~~~~l~~l~~~~------~~~~~~~~~~~~ 106 (120)
T cd04045 80 LGSVEINVSDLIKKN------EDGKYVEYDDEE 106 (120)
T ss_pred eeEEEEeHHHhhCCC------CCceEEecCCCc
Confidence 999999999998762 367888887653
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-15 Score=135.80 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=89.3
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC---CEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG---NKWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVF 436 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~ 436 (782)
+..+.|.|.|++|+||++++. ..+. ||||++++. ....+|++++++.||+|||.|.|.+... ...|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~--~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTK--DVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred CCCCEEEEEEEEecCCCCccC--CCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 445789999999999998752 2355 999999983 3567999999999999999999998752 358999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
|++..+ .+++||++.++|+++........|++|.
T Consensus 89 d~~~~~------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFS------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCC------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 998765 7899999999999998888788999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-15 Score=137.80 Aligned_cols=90 Identities=31% Similarity=0.519 Sum_probs=82.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYK--GIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDF 117 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~ 117 (782)
.|+|+|++|++|+..|..|.+||||+++++++. .+|+++++|.||+|||+|.|.+.......|.|+|||++.. +|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 379999999999999988999999999999864 5788899999999999999998766678999999999998 9999
Q ss_pred eEEEEEEccccCC
Q 045512 118 VGRVTFDLFEVPH 130 (782)
Q Consensus 118 lG~~~i~l~~l~~ 130 (782)
||++.+++.+...
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998875
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-15 Score=142.55 Aligned_cols=118 Identities=30% Similarity=0.345 Sum_probs=100.0
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeccccCCCCCeeccEEEEEeccC-
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-----KGIAKHLEKNQNPVWNQIFAFSKERL- 98 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-----~~~T~~i~~t~nP~wne~f~f~~~~~- 98 (782)
|.+.+++.|+... +.|.|+|++|+||+..+..+.+||||++++.+. +++|+++.++.||.|||+|.|.+...
T Consensus 1 G~i~~~l~y~~~~--~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~ 78 (134)
T cd00276 1 GELLLSLSYLPTA--ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ 78 (134)
T ss_pred CeEEEEEEeeCCC--CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH
Confidence 4578888888754 689999999999999988899999999999652 66999999999999999999998653
Q ss_pred -CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 045512 99 -QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD 151 (782)
Q Consensus 99 -~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (782)
....|.|+|||.+.. ++++||++.+++.+ .+. ...+|++|....++
T Consensus 79 l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~-----~~~~W~~l~~~~~~ 126 (134)
T cd00276 79 LEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGE-----ELEHWNEMLASPRK 126 (134)
T ss_pred hCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCc-----HHHHHHHHHhCCCC
Confidence 357899999999987 99999999999999 221 26789999876543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-15 Score=135.04 Aligned_cols=98 Identities=14% Similarity=0.264 Sum_probs=81.3
Q ss_pred eEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCC-CCeeccEEEEEeccC-CCC
Q 045512 29 TASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQ-NPVWNQIFAFSKERL-QSN 101 (782)
Q Consensus 29 ~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~-nP~wne~f~f~~~~~-~~~ 101 (782)
+++.| .+..+.|.|+|++|+||++.+..+.+||||+|++-+ .++||+++++|+ ||+|||+|.|++... ..-
T Consensus 5 ~sL~Y--~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v 82 (135)
T cd08692 5 LGTCF--QAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGI 82 (135)
T ss_pred EEeee--cCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhee
Confidence 44455 446779999999999999886677889999999842 378999999996 699999999998642 245
Q ss_pred eEEEEEEeCCCC-CCceeEEEEEEcccc
Q 045512 102 LVEVTVKDKDIG-KDDFVGRVTFDLFEV 128 (782)
Q Consensus 102 ~L~v~V~d~d~~-~d~~lG~~~i~l~~l 128 (782)
.|.|+|||++.. ++++||++.+.....
T Consensus 83 ~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 83 QFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 788999999988 999999999998763
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-15 Score=137.97 Aligned_cols=112 Identities=26% Similarity=0.291 Sum_probs=93.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-EEEeecccc-CCCCCccccEEEEEEeCC-----CceEEEEEEeCC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-KWIRTRTIL-DTLDPRWNEQYTWEVYDP-----CTVITIGVFDNC 439 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~~T~~~~-~t~nP~wne~~~f~v~~~-----~~~l~i~V~d~~ 439 (782)
.|+|+|++|++|+..+. .+. ||||+|++++ ++.+|+++. ++.||.|||.|.|.+.++ ...|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~~~---~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNVNL---FGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCCCc---ccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 37899999999997653 356 9999999988 889999986 589999999999999876 578999999998
Q ss_pred CCCCCCCCcCCCccEEEEEecccccCCcE-----EEEEEEceeeCCCCCccccEEEE
Q 045512 440 HVNGSKDDAIDQRIGKVRIRLSTLETDRL-----YTHYYPLLVLTPSGLKKNGELHL 491 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l 491 (782)
.++ +|++||++.|+|.++..+.. ...||+|.... | +..|.|++
T Consensus 78 ~~~------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g-~~~G~~~~ 125 (125)
T cd04051 78 PSL------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--G-KPQGVLNF 125 (125)
T ss_pred CCC------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--C-CcCeEEeC
Confidence 765 79999999999999976543 46899998643 3 44688874
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-15 Score=138.06 Aligned_cols=91 Identities=31% Similarity=0.545 Sum_probs=82.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGS 444 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~ 444 (782)
.|.|+|+|++|+||+..+ . +. ||||+++++++..+|++++++.||+|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d---~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRD---F-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCCC---C-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 388999999999998654 2 45 9999999999999999999999999999999999998889999999999876
Q ss_pred CCCcCCCccEEEEEecccccCC
Q 045512 445 KDDAIDQRIGKVRIRLSTLETD 466 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~ 466 (782)
+|++||++.+++.++...
T Consensus 75 ----~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 75 ----KDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred ----CCCEEEEEEEEHHHhhhh
Confidence 899999999999997543
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-15 Score=137.19 Aligned_cols=89 Identities=26% Similarity=0.301 Sum_probs=77.2
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecC--CCCCeEEEEEEEcc
Q 045512 202 YYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASE--PFEDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~V~d~d 274 (782)
..|.|+|++|+||+..+..+.+||||++++.. .+.+|+++++ +.||+|||+|.|.+.. ..+..|.|+|||+|
T Consensus 15 ~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 36999999999999999889999999999952 2567888876 9999999999999864 33567999999999
Q ss_pred CCCCCceeEEEEEeCCC
Q 045512 275 GPGKDEILGREFIPVRN 291 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~ 291 (782)
..+++++||++.++...
T Consensus 94 ~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 94 EDGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCCCeeEEEEECCCC
Confidence 99999999999998764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=136.87 Aligned_cols=102 Identities=24% Similarity=0.340 Sum_probs=90.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccC-CCCCccccEEEEEEeCC----CceEEEEEEeCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILD-TLDPRWNEQYTWEVYDP----CTVITIGVFDNCH 440 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~-t~nP~wne~~~f~v~~~----~~~l~i~V~d~~~ 440 (782)
|.|+|.|++|+||++.+. .+. ||||+++++++..+|+++++ +.||.|||.|.|.+..+ ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~~~---~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDF---LGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCC---CCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 689999999999997653 356 99999999999999999875 89999999999999876 4689999999998
Q ss_pred CCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 441 VNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
++ +|++||++.+++.++..+.....|++|..
T Consensus 78 ~~------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FS------DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CC------CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 75 78999999999999987777789999875
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-15 Score=135.12 Aligned_cols=94 Identities=20% Similarity=0.334 Sum_probs=81.8
Q ss_pred cCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC--CCceEEEEEEeCC
Q 045512 363 KGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYD--PCTVITIGVFDNC 439 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~--~~~~l~i~V~d~~ 439 (782)
....|.|+|+|++|+||+. + ..+. ||||+|+++++.+||++++++.||+|||+|.|.... ....|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d---~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-D---YFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-C---cCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 4567999999999999973 2 3456 999999999999999999999999999999998543 3679999999999
Q ss_pred CCCCCCCCcCCCccEEEEEecccccCC
Q 045512 440 HVNGSKDDAIDQRIGKVRIRLSTLETD 466 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~ 466 (782)
.++ +|++||++.++|.....+
T Consensus 100 ~~s------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC------CCCeeEEEEEEecCCcee
Confidence 876 899999999999977654
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-15 Score=169.02 Aligned_cols=104 Identities=20% Similarity=0.402 Sum_probs=92.1
Q ss_pred CC-CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCC
Q 045512 389 LT-DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETD 466 (782)
Q Consensus 389 ~~-dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~ 466 (782)
++ ||||+|.++++ ..||++++++.||+|||+|.|.+.++...|+|+|+|+|.++ +++||++.|+|.++..|
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-------aD~IG~a~IPL~~L~~G 147 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-------AQIIGTAKIPVRDIASG 147 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-------CceeEEEEEEHHHcCCC
Confidence 35 99999999876 56999999999999999999999998889999999999884 58999999999999999
Q ss_pred cEEEEEEEceeeCCCCCccccEEEEEEEEEECc
Q 045512 467 RLYTHYYPLLVLTPSGLKKNGELHLALRFTCTA 499 (782)
Q Consensus 467 ~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~ 499 (782)
+..+.|++|.....+-.+..|+|+++++|.+..
T Consensus 148 e~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 148 ERISGWFPVLGASGKPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred CceEEEEEccccCCCCCCCCcEEEEEEEEEEcc
Confidence 999999999986554444568999999997753
|
|
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.7e-15 Score=133.08 Aligned_cols=112 Identities=28% Similarity=0.443 Sum_probs=88.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccC--CCCeEEEEEEeCCCC-CCce
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERL--QSNLVEVTVKDKDIG-KDDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~--~~~~L~v~V~d~d~~-~d~~ 117 (782)
|.|+|++|+||+.. |.+||||+++++++ .++|+++.+ .||+|||+|.|.+... ....|.|.+||.+.. ++.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 78999999999985 579999999 9999999999998653 235688888888876 6777
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 118 VGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 118 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
+|.+.++. +..+. ...+||+|.+.++.....|+|++.++|
T Consensus 78 ~g~v~l~~--~~~~~-----~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSK--LDLGQ-----GKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEecC--cCCCC-----cceeEEECccCCCCCCcCceEEEEEEC
Confidence 77766554 33322 267999998766543335999998864
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-15 Score=134.60 Aligned_cols=102 Identities=30% Similarity=0.328 Sum_probs=89.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGS 444 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~ 444 (782)
|.|+|.|++|+||++.+. .+. ||||++++++ ...+|++++++.||.|||.|.|++..+...|.|+|||++.++
T Consensus 1 g~L~V~Vi~a~~L~~~d~---~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEG---VGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCccC---CCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 689999999999997653 356 9999999977 568999999999999999999999887789999999999876
Q ss_pred CCCcCCCccEEEEEecccccCCcEEEEEEEceee
Q 045512 445 KDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVL 478 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 478 (782)
+|++||++.+++.++..+ ..+.||-|.+.
T Consensus 76 ----~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 ----KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred ----CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 789999999999999876 45789988763
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.6e-15 Score=133.93 Aligned_cols=106 Identities=26% Similarity=0.392 Sum_probs=91.4
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEE-ec--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFS-KE-- 96 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~-~~-- 96 (782)
|...+++.|+.. .+.|.|+|++|++|+..+..+.+||||++.+.+ .+.+|++++++.||+|||+|.|. +.
T Consensus 2 G~~~~~l~y~~~--~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 2 GTLEFTLLYDPA--NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred cEEEEEEEEeCC--CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 567888888885 468999999999999998889999999999842 46899999999999999999996 32
Q ss_pred cCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCC
Q 045512 97 RLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRV 132 (782)
Q Consensus 97 ~~~~~~L~v~V~d~d~~~d~~lG~~~i~l~~l~~~~ 132 (782)
+.....|.|+|||++..++++||++.+++.++..+.
T Consensus 80 ~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 80 DIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred HhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCc
Confidence 233578999999998778899999999999998754
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-14 Score=131.86 Aligned_cols=111 Identities=30% Similarity=0.383 Sum_probs=93.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLDPRWNEQYTWEVYD-PCTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~~T~~~~~t~nP~wne~~~f~v~~-~~~~l~i~V~d~~~~~~~~ 445 (782)
|+|+|++|++|+..+. .+. ||||++.+++ +.++|+++.++.||.|||.|.|.+.+ ....+.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~~~---~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSADR---NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCCCC---CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 5789999999997653 356 9999999975 45899999999999999999999986 4678999999999765
Q ss_pred CCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEE
Q 045512 446 DDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHL 491 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 491 (782)
++++||++.+++.++..+.....|++|.. +|..+.|.+.+
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~~~~L~~---~g~~~~~~~~~ 114 (115)
T cd04040 75 ---KDDLLGSAYIDLSDLEPEETTELTLPLDG---QGGGKLGAVFL 114 (115)
T ss_pred ---CCCceEEEEEEHHHcCCCCcEEEEEECcC---CCCccCceEEc
Confidence 79999999999999998888899999975 34445577654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-15 Score=133.06 Aligned_cols=102 Identities=24% Similarity=0.350 Sum_probs=87.7
Q ss_pred EEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC---eeeecccccCCCCCCcccceeEEEecCC---CCCeEEEEEEEcc
Q 045512 202 YYLRVFVFEAQDLVPSEEG-RAPDAYVKIQLGN---LVRVTRPSHVRSVNPVWNEEHMFVASEP---FEDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~-g~~dpyv~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~V~d~d 274 (782)
|.|+|+|++|++|+..+.. +.+||||++.+.+ ...+|+++++ +.||.|||.|.|.+... ....|.|+|||++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 4799999999999999987 8999999999853 4679999887 99999999999987654 3467999999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 275 GPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
..++|++||++.++++++.. ...|+++...
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~--------~~~~~~~~~~ 109 (111)
T cd04041 80 RFTADDRLGRVEIDLKELIE--------DRNWMGRRED 109 (111)
T ss_pred CCCCCCcceEEEEEHHHHhc--------CCCCCccccc
Confidence 99999999999999999873 4567777643
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=134.86 Aligned_cols=102 Identities=28% Similarity=0.398 Sum_probs=87.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDP--CTVITIGVFDN 438 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~--~~~l~i~V~d~ 438 (782)
+.|+|+|++|++|+..+. .+. ||||+|.+.+ ...+|++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~~~---~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPMDP---NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCcCC---CCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 689999999999997643 356 9999999963 678999999999999999999998753 46899999999
Q ss_pred CCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceee
Q 045512 439 CHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVL 478 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 478 (782)
+..+ ++++||++.++|+++... ....||+|.+.
T Consensus 90 ~~~~------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 90 DRTT------RNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCC------CcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 8765 789999999999999755 56789999864
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.5e-14 Score=131.98 Aligned_cols=117 Identities=28% Similarity=0.477 Sum_probs=98.5
Q ss_pred cEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeeeccccCCC-CCeeccEEEEEeccCCCCeEEEEEEeC
Q 045512 40 HYLFVNVVKARNLPVMD--VSGSLDPYVEVKLG------NYKGIAKHLEKNQ-NPVWNQIFAFSKERLQSNLVEVTVKDK 110 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~------~~~~~T~~i~~t~-nP~wne~f~f~~~~~~~~~L~v~V~d~ 110 (782)
..|+|+|++|+||+..+ ..+.+||||++++. ..+++|+++.++. ||+|||+|.|.+.......|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36899999999999887 57899999999994 4568999988776 999999999998766567899999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 111 DIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 111 d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
+..++++||++.+++.++..+ ..|++|.+..|.....|.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 887899999999999999542 3689998887764334899888764
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=130.95 Aligned_cols=111 Identities=30% Similarity=0.487 Sum_probs=86.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVFDNCHVNG 443 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~d~~~~~~ 443 (782)
|+|+|++|+||+.. +. ||||+++++++ ..+|+++++ .||.|||+|.|.+... ...|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999853 45 99999999885 479999999 9999999999999863 346888888877543
Q ss_pred CCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 444 SKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
++..+|++.|. .+..+.....||+|...+.. .+..|+|+|+++|
T Consensus 74 -----~~~~~g~v~l~--~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~ 117 (117)
T cd08383 74 -----RDIVIGKVALS--KLDLGQGKDEWFPLTPVDPD-SEVQGSVRLRARY 117 (117)
T ss_pred -----CeeEEEEEEec--CcCCCCcceeEEECccCCCC-CCcCceEEEEEEC
Confidence 56667765554 45556677999999875542 3457999999865
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.7e-15 Score=136.63 Aligned_cols=102 Identities=23% Similarity=0.316 Sum_probs=88.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC----CEEEeeccccCCCCCccccEEEEEEeCC----------------
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYG----NKWIRTRTILDTLDPRWNEQYTWEVYDP---------------- 427 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~----~~~~~T~~~~~t~nP~wne~~~f~v~~~---------------- 427 (782)
|+|.|++|+||+.+ . .+. ||||+++++ +...+|++++++.||.|||.|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~-~---~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~ 76 (137)
T cd08675 1 LSVRVLECRDLALK-S---NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE 76 (137)
T ss_pred CEEEEEEccCCCcc-c---CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccc
Confidence 57899999999865 2 356 999999998 7789999999999999999999998864
Q ss_pred CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCC
Q 045512 428 CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTP 480 (782)
Q Consensus 428 ~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 480 (782)
...|.|+|||++..+ ++++||++.+++.++........||+|.....
T Consensus 77 ~~~l~i~V~d~~~~~------~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 77 KSELRVELWHASMVS------GDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred ccEEEEEEEcCCcCc------CCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 348999999999765 79999999999999987777899999987654
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=130.39 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=77.3
Q ss_pred CceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCC-CCcccceeEEEecCCCC-CeEEEEEE
Q 045512 199 PKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSV-NPVWNEEHMFVASEPFE-DLIIVTVE 271 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~-nP~wne~f~f~v~~~~~-~~L~i~V~ 271 (782)
|..+.|+|+|++|+||+.+...+.+||||+|.+.. .+.||+++++ +. ||.|||+|.|.+..... -.+.|+||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEEEEEE
Confidence 45567999999999999987667789999998852 4678888876 74 69999999999975433 35888999
Q ss_pred EccCCCCCceeEEEEEeCCCc
Q 045512 272 DRIGPGKDEILGREFIPVRNV 292 (782)
Q Consensus 272 d~d~~~~d~~lG~~~i~l~~l 292 (782)
|++..+++++||++.++.+..
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCcCCceEEEEEECCccC
Confidence 999888999999999999764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-14 Score=131.37 Aligned_cols=117 Identities=20% Similarity=0.330 Sum_probs=96.5
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCC-C---
Q 045512 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYK-GIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI-G--- 113 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~-~--- 113 (782)
...|.|.|++|++|++++ +|||++.+++++ .||+++.++.||.|+|.|.|..... ...|.|.||+.+. .
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~ 83 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKK 83 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccccc
Confidence 347999999999999876 899999999986 5999999999999999999975443 4679999976543 2
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc--------ccceEEEEEEEEcc
Q 045512 114 -KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK--------ITQGEIMLAVWIGT 166 (782)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--------~~~G~l~l~~~~~~ 166 (782)
++++||.+.|++.++..+. ..+.||+|.+.++.. ...+.|++++.|..
T Consensus 84 ~~~~~IG~V~Ip~~~l~~~~-----~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 84 DKSQLIGTVNIPVTDVSSRQ-----FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred cCCcEEEEEEEEHHHhcCCC-----cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 5799999999999998643 378999999877553 33379999998863
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.8e-15 Score=136.63 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=85.0
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC--C---EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEE
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG--N---KWIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIGV 435 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~---~~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V 435 (782)
..+.|.|.|++|+||+..+. .|. ||||++.+. + .+.||++++++.||.|||.|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~---~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v 89 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDV---SGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLV 89 (136)
T ss_pred CCCeEEEEEEEeeCCCcccc---CCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 34789999999999997653 366 999999983 2 25789999999999999999999874 345799999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
||++.++ ++++||++.+++... +....+|++|..
T Consensus 90 ~d~d~~~------~~~~iG~~~~~~~~~--~~~~~~w~~l~~ 123 (136)
T cd08404 90 LDSDRVT------KNEVIGRLVLGPKAS--GSGGHHWKEVCN 123 (136)
T ss_pred EECCCCC------CCccEEEEEECCcCC--CchHHHHHHHHh
Confidence 9999876 899999999999983 445688998864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=133.96 Aligned_cols=105 Identities=26% Similarity=0.323 Sum_probs=85.1
Q ss_pred ceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCCC--CCeEEEEEEE
Q 045512 200 KLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEPF--EDLIIVTVED 272 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~d 272 (782)
..+.|+|+|++|++|+..+..+.+||||++.+++ ...+|+++++ +.||.|||+|.|.+.... ...|.|+|||
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 4457999999999999999999999999999952 3567888776 999999999999985432 3479999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 273 RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 273 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
++..+++++||++.+++..... ...+|+++...
T Consensus 92 ~~~~~~~~~iG~~~i~~~~~~~-------~~~~W~~~~~~ 124 (136)
T cd08402 92 YDRIGKNDPIGKVVLGCNATGA-------ELRHWSDMLAS 124 (136)
T ss_pred CCCCCCCceeEEEEECCccCCh-------HHHHHHHHHhC
Confidence 9999999999999999976421 24566665443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-15 Score=150.96 Aligned_cols=227 Identities=18% Similarity=0.226 Sum_probs=174.0
Q ss_pred CceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEe---cc
Q 045512 26 GDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSK---ER 97 (782)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~---~~ 97 (782)
.-++...|+-.. ..+..+|.+|++|.+++.++..|||++..++. .+.+|++..+++||+|||+-.+.- ++
T Consensus 81 ~~~~~~~y~~~~--~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~ 158 (362)
T KOG1013|consen 81 ALEFELLYDSES--RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDD 158 (362)
T ss_pred chhhhhhhhhhh--hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccch
Confidence 345666666544 47899999999999999999999999999975 367899999999999999977652 22
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC----c-ccceEEEEEEEEcccCCcc
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD----K-ITQGEIMLAVWIGTQADES 171 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~----~-~~~G~l~l~~~~~~~~d~~ 171 (782)
.....+++.|.|.+.+ .++++|+..+++..|...... ....|+.-..+.+. . ...|+|.+++-+.++
T Consensus 159 ~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k---~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~---- 231 (362)
T KOG1013|consen 159 THLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRK---SFNICLEKSLPSERADRDEDEERGAILISLAYSST---- 231 (362)
T ss_pred hhhhhhheeeccCcccccccCcccchhhhhccChhhcc---hhhhhhhccCCcccccccchhhccceeeeeccCcC----
Confidence 3356789999999998 899999999999988765431 23444443333111 0 223777777644321
Q ss_pred ccccccccccccccccccccccccccCCceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCC
Q 045512 172 FSEAWHSDAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSV 246 (782)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~ 246 (782)
...+.|+++.|.+|..+|.++.+||||..++.. .+.+|.+.++ +.
T Consensus 232 -----------------------------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~ 281 (362)
T KOG1013|consen 232 -----------------------------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TL 281 (362)
T ss_pred -----------------------------CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cC
Confidence 124789999999999999999999999999863 3567777776 99
Q ss_pred CCcccceeEEEecCC--CCCeEEEEEEEccCCCCCceeEEEEEeCCC
Q 045512 247 NPVWNEEHMFVASEP--FEDLIIVTVEDRIGPGKDEILGREFIPVRN 291 (782)
Q Consensus 247 nP~wne~f~f~v~~~--~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~ 291 (782)
+|.|++.|.|.+... ....+.|+|||++..+..+++|-+...+..
T Consensus 282 ~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 282 NPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred CccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccccc
Confidence 999999999987532 345799999999988899999987776543
|
|
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=129.11 Aligned_cols=100 Identities=27% Similarity=0.434 Sum_probs=85.5
Q ss_pred CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCC
Q 045512 57 VSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPD 135 (782)
Q Consensus 57 ~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~ 135 (782)
.+|.+||||+|+++++ ..+|+++.++.||+|||.|.|.+.+.....|.|.|+|.+..++++||++.++|.++....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~--- 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDAT--- 85 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhh---
Confidence 4789999999999985 679999999999999999999998766788999999999888999999999999996532
Q ss_pred CCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 136 SPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 136 ~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
....+||+|.+. . .|+|++++.|.
T Consensus 86 -~~~~~w~~L~~~--~---~G~i~~~~~~~ 109 (111)
T cd04052 86 -SVGQQWFPLSGN--G---QGRIRISALWK 109 (111)
T ss_pred -hccceeEECCCC--C---CCEEEEEEEEe
Confidence 125799999852 2 29999998765
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-14 Score=129.36 Aligned_cols=115 Identities=23% Similarity=0.319 Sum_probs=91.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~ 445 (782)
.|+|+|++|+ |...+ ..+. ||||+++++++ ..+|++++++.||.|||.|.|.+.. ...|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~~---~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~--- 74 (125)
T cd04021 3 QLQITVESAK-LKSNS---KSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLK--- 74 (125)
T ss_pred eEEEEEEeeE-CCCCC---cCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCC---
Confidence 5899999998 54433 2355 99999999987 8999999999999999999999864 578999999999876
Q ss_pred CCcCCCccEEEEEecccccCCc---E--EEEEEEceeeCCCCCccccEEEEEE
Q 045512 446 DDAIDQRIGKVRIRLSTLETDR---L--YTHYYPLLVLTPSGLKKNGELHLAL 493 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~~---~--~~~~~~L~~~~~~g~~~~G~i~l~~ 493 (782)
.|++||++.++|+++..+. . ...|++|........+..|+|++++
T Consensus 75 ---~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ---ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred ---CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 8999999999999986432 1 3458888754321224569998874
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-14 Score=131.86 Aligned_cols=91 Identities=23% Similarity=0.358 Sum_probs=78.5
Q ss_pred eEEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEEEEc
Q 045512 201 LYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLG--N---LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDR 273 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg--~---~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~ 273 (782)
.+.|.|+|++|++|+..+..+.+||||++.+. + ...+|+++++ +.||.|||.|.|.+... .+..|.|+|||+
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 34699999999999999988999999999983 2 3568888886 99999999999987532 345799999999
Q ss_pred cCCCCCceeEEEEEeCCCc
Q 045512 274 IGPGKDEILGREFIPVRNV 292 (782)
Q Consensus 274 d~~~~d~~lG~~~i~l~~l 292 (782)
+..+++++||++.+++.+.
T Consensus 93 ~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 93 DRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCCcEeEEEEECCccC
Confidence 9999999999999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=132.02 Aligned_cols=106 Identities=20% Similarity=0.278 Sum_probs=84.3
Q ss_pred ceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEEEE
Q 045512 200 KLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVED 272 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d 272 (782)
..+.|+|+|++|++|+..+..|.+||||++.+.. +..+|+++++ +.||.|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 3457999999999999999889999999999832 3568888876 99999999999998532 23469999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 273 RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 273 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
++..+++++||++.++...... ....+|+.+...
T Consensus 91 ~d~~~~~~~iG~~~l~~~~~~~------~~~~~W~~l~~~ 124 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQYSSGP------SETNHWRRMLNS 124 (135)
T ss_pred CCCCCCCcEEEEEEEcCccCCc------hHHHHHHHHHhC
Confidence 9999999999999877643331 124667776654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=134.25 Aligned_cols=102 Identities=28% Similarity=0.519 Sum_probs=88.8
Q ss_pred cCCceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----------------------------eeeecccccCCCCC
Q 045512 197 FSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----------------------------LVRVTRPSHVRSVN 247 (782)
Q Consensus 197 ~~p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----------------------------~~~kT~~~~~~t~n 247 (782)
..|..+.|+|+|++|++|...|..|.+||||++.++. +.++|+++++ +.|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tln 101 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLN 101 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCC
Confidence 4578999999999999999999999999999999863 2367888876 999
Q ss_pred CcccceeEEEecCCCCCeEEEEEEEccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEc
Q 045512 248 PVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNL 309 (782)
Q Consensus 248 P~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 309 (782)
|.|||+|.|.+.......|.|+|||++ +++||++.++++++... ..+.||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~------~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC------GLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCC------CCCCeEeC
Confidence 999999999997766778999999997 88999999999998732 36899986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-15 Score=153.90 Aligned_cols=106 Identities=32% Similarity=0.557 Sum_probs=93.7
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccC-CCCeEEEEEEeCC
Q 045512 38 QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERL-QSNLVEVTVKDKD 111 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~-~~~~L~v~V~d~d 111 (782)
....|.|+|.+|+||.++|.+|.|||||++++-+ .+.+|++++.|+||+|||+|.|.+... ....|.|+|||+|
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 3458999999999999999999999999999953 377999999999999999999997543 3578999999999
Q ss_pred CC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 112 IG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 112 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
+. ++||+|+.++.+++|.... ..-||.|....
T Consensus 258 rTsRNDFMGslSFgisEl~K~p------~~GWyKlLsqe 290 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKAP------VDGWYKLLSQE 290 (683)
T ss_pred ccccccccceecccHHHHhhcc------hhhHHHHhhhh
Confidence 99 9999999999999998754 67899997654
|
|
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-14 Score=129.54 Aligned_cols=98 Identities=23% Similarity=0.227 Sum_probs=83.7
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCC----C
Q 045512 45 NVVKARNLPVMDVSGSLDPYVEVKLGNY-------KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI----G 113 (782)
Q Consensus 45 ~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~----~ 113 (782)
-.++|++|+..+..|.+||||+|++.+. .++|++++++.||+|||+|.|.+.......|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 3488999999998899999999999765 4899999999999999999998654446789999999996 6
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 045512 114 -KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
++++||++.+++.++..... ...|++|.+
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~-----~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPG-----QKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCC-----cEEEEEccC
Confidence 99999999999999986542 456788843
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-14 Score=126.61 Aligned_cols=98 Identities=22% Similarity=0.297 Sum_probs=82.4
Q ss_pred CCCC-CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccc
Q 045512 387 GKLT-DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYDP-CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTL 463 (782)
Q Consensus 387 ~~~~-dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l 463 (782)
..|. ||||+|+++++ ..+|++++++.||.|||.|.|.+.++ ...|.|.|+|++.+ +|++||++.++|+++
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-------~d~~iG~~~v~L~~l 81 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-------HDPVLGSVSISLNDL 81 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-------CCCeEEEEEecHHHH
Confidence 3466 99999999885 57999999999999999999999875 56899999999864 589999999999998
Q ss_pred cC-CcEEEEEEEceeeCCCCCccccEEEEEEEEEE
Q 045512 464 ET-DRLYTHYYPLLVLTPSGLKKNGELHLALRFTC 497 (782)
Q Consensus 464 ~~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
.. +.....||+|.+ ++.|+|++++.|.+
T Consensus 82 ~~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 82 IDATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred HhhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 54 344578999974 34699999988754
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-14 Score=130.05 Aligned_cols=92 Identities=25% Similarity=0.439 Sum_probs=81.5
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------CeeeecccccCCCCCCcccceeEEEecCC----CCCeEEEEE
Q 045512 202 YYLRVFVFEAQDLVPSEEGRAPDAYVKIQLG-------NLVRVTRPSHVRSVNPVWNEEHMFVASEP----FEDLIIVTV 270 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-------~~~~kT~~~~~~t~nP~wne~f~f~v~~~----~~~~L~i~V 270 (782)
..|+|+|++|++|+..+..+.+||||++.+. ...++|+++++ +.||.|||+|.|.+... ....|.|+|
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 3699999999999999888999999999996 34789999987 99999999999998653 245799999
Q ss_pred EEccCCCCCceeEEEEEeCCCccc
Q 045512 271 EDRIGPGKDEILGREFIPVRNVPQ 294 (782)
Q Consensus 271 ~d~d~~~~d~~lG~~~i~l~~l~~ 294 (782)
||++..+++++||++.++|+++..
T Consensus 95 ~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 95 KDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EecCCCCCCcEeEEEEEeHHHCCc
Confidence 999999999999999999998874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.8e-14 Score=129.97 Aligned_cols=105 Identities=20% Similarity=0.236 Sum_probs=83.9
Q ss_pred ceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCCC--CCeEEEEEEE
Q 045512 200 KLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEPF--EDLIIVTVED 272 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~d 272 (782)
..+.|+|+|++|++|+..+..|.+||||++.+.. ...+|+++++ +.||.|||.|.|.+.... ...|.|+|||
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN-TLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccC-CCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 3457999999999999999999999999999852 3567888775 999999999999875432 3469999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 273 RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 273 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
++..+++++||++.+++.... .....|+++...
T Consensus 91 ~~~~~~~~~IG~~~l~~~~~~-------~~~~~w~~~~~~ 123 (134)
T cd08403 91 YDRVGHNELIGVCRVGPNADG-------QGREHWNEMLAN 123 (134)
T ss_pred CCCCCCCceeEEEEECCCCCC-------chHHHHHHHHHC
Confidence 999999999999999987322 124567665443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.7e-14 Score=129.89 Aligned_cols=104 Identities=19% Similarity=0.261 Sum_probs=84.9
Q ss_pred eEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEEEE
Q 045512 201 LYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN------LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVED 272 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~------~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d 272 (782)
.+.|.|+|++|+||+..+..+.+||||++.+.. .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~ 92 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQLSEVTLMFSVYN 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence 346999999999999999989999999999952 2468888876 99999999999998643 34589999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccC
Q 045512 273 RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHK 311 (782)
Q Consensus 273 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 311 (782)
++..+++++||++.+++...... ...+|+.+..
T Consensus 93 ~~~~~~~~~iG~v~l~~~~~~~~------~~~hW~~~l~ 125 (138)
T cd08408 93 KRKMKRKEMIGWFSLGLNSSGEE------EEEHWNEMKE 125 (138)
T ss_pred CCCCCCCcEEEEEEECCcCCCch------HHHHHHHHHh
Confidence 99999999999999998754321 2356766644
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=128.76 Aligned_cols=89 Identities=22% Similarity=0.238 Sum_probs=75.9
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEEEEcc
Q 045512 202 YYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d 274 (782)
+.|.|+|++|+||+..+ .+.+||||++.+.. .+.+|+++++ +.||.|||.|.|.+... ....|.|+|||.+
T Consensus 15 ~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 15 NRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDG-AASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeC-CCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 46999999999999888 77899999999863 3568888776 99999999999998532 3457999999999
Q ss_pred CCCCCceeEEEEEeCCCc
Q 045512 275 GPGKDEILGREFIPVRNV 292 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~l 292 (782)
..+++++||++.++....
T Consensus 93 ~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 93 GVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred CCCCcceEEEEEECCccc
Confidence 989999999999996543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.8e-14 Score=158.36 Aligned_cols=124 Identities=23% Similarity=0.391 Sum_probs=104.8
Q ss_pred cEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCe-eeee
Q 045512 40 HYLFVNVVKARNLPVMDV------------------------------------------SGSLDPYVEVKLGNY-KGIA 76 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~------------------------------------------~g~~dPyv~v~~~~~-~~~T 76 (782)
|.|.|+|.+|++|+.+|. .+++||||+|.++++ ..||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 688999999999986321 247899999999886 5699
Q ss_pred ccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcc-cc
Q 045512 77 KHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKI-TQ 155 (782)
Q Consensus 77 ~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~~ 155 (782)
++++++.||+|||+|.|.+... ...|.|+|||+|.+++++||++.|++.++..+.. ...|++|.+..++.. ..
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~-----vd~Wl~Ll~~~~kp~k~~ 167 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGER-----ISGWFPVLGASGKPPKAE 167 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCc-----eEEEEEccccCCCCCCCC
Confidence 9999999999999999999885 4689999999999988999999999999988653 679999998876643 23
Q ss_pred eEEEEEEEEcccCC
Q 045512 156 GEIMLAVWIGTQAD 169 (782)
Q Consensus 156 G~l~l~~~~~~~~d 169 (782)
|+|++++.|.....
T Consensus 168 ~kl~v~lqf~pv~~ 181 (868)
T PLN03008 168 TAIFIDMKFTPFDQ 181 (868)
T ss_pred cEEEEEEEEEEccc
Confidence 79999999876543
|
|
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=128.40 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=87.1
Q ss_pred ceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEEEE
Q 045512 200 KLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVED 272 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d 272 (782)
..+.|.|+|++|++|+..+..+.+||||++.+.+ ...+|+++++ +.||.|||+|.|.+... ....|.|+|||
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 4457999999999999999889999999999963 4678998886 99999999999998643 34579999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 273 RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 273 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
++..+++++||++.++++... ....+|+++...
T Consensus 90 ~d~~~~~~~lG~~~i~l~~~~-------~~~~~W~~~l~~ 122 (133)
T cd08384 90 KDIGKSNDYIGGLQLGINAKG-------ERLRHWLDCLKN 122 (133)
T ss_pred CCCCCCccEEEEEEEecCCCC-------chHHHHHHHHhC
Confidence 998889999999999997522 125678876543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-14 Score=175.61 Aligned_cols=117 Identities=23% Similarity=0.427 Sum_probs=100.5
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCC--ceEEEEEEeCC
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYDPC--TVITIGVFDNC 439 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~~~--~~l~i~V~d~~ 439 (782)
.-.|.|.|+|++|+||. . + .++ ||||++.+|++ +.||++++++.||+|||.|+|.+.+|. ..|+|+|||+|
T Consensus 1977 ~~~G~L~V~V~~a~nl~-~---~-~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK-Q---S-MGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hCCcceEEEEeeccccc-c---c-cCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 45799999999999997 2 2 245 99999999965 889999999999999999999999864 67999999999
Q ss_pred CCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccE---EEEEEEEE
Q 045512 440 HVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGE---LHLALRFT 496 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---i~l~~~~~ 496 (782)
.++ ++.||++.|++.++..++.++.||+|... | +|.|+ |+++++|+
T Consensus 2052 ~f~-------kd~~G~~~i~l~~vv~~~~~~~~~~L~~~---~-~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2052 TFG-------KSSLGKVTIQIDRVVMEGTYSGEYSLNPE---S-NKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred ccC-------CCCCceEEEEHHHHhcCceeeeeeecCcc---c-ccCCCcceEEEEEEec
Confidence 874 55999999999999999999999999842 2 45577 88887763
|
|
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-14 Score=148.63 Aligned_cols=104 Identities=24% Similarity=0.430 Sum_probs=92.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCCC-CCeEEEEEEEccCC
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEPF-EDLIIVTVEDRIGP 276 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~~-~~~L~i~V~d~d~~ 276 (782)
.|+|+|.+|+||.++|.+|.+||||++.+-. .+++|++++. ++||+|||+|.|.+.... +.+|.|+|||||..
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEeccccc
Confidence 5999999999999999999999999999952 4788999997 999999999999986543 55799999999999
Q ss_pred CCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCCC
Q 045512 277 GKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPS 313 (782)
Q Consensus 277 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 313 (782)
++++++|..++.+++|++. ..+.||.|-.+.
T Consensus 260 sRNDFMGslSFgisEl~K~------p~~GWyKlLsqe 290 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKA------PVDGWYKLLSQE 290 (683)
T ss_pred ccccccceecccHHHHhhc------chhhHHHHhhhh
Confidence 9999999999999999965 378899887764
|
|
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=122.00 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=68.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeC------
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDK------ 110 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~------ 110 (782)
|.|+|++|+||+ +.+||||++.+++ .+.+|+++++|+||+|||+|.|.+.. ...|.+.|||.
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 579999999996 5589999999964 35899999999999999999999874 67999999998
Q ss_pred -CCC-CCceeEEEEEEccc
Q 045512 111 -DIG-KDDFVGRVTFDLFE 127 (782)
Q Consensus 111 -d~~-~d~~lG~~~i~l~~ 127 (782)
|.. +|+++|++.+.|..
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccCcccEEEEEEEEECH
Confidence 345 89999888887653
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-13 Score=119.59 Aligned_cols=85 Identities=26% Similarity=0.475 Sum_probs=66.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCC-C
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCH-V 441 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~-~ 441 (782)
|.|+|++|+||+ +. ||||++.+.+ .+.||+++++|+||+|||+|+|++.. ...|.+.|||++. .
T Consensus 1 L~V~V~~A~~L~--------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK--------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC--------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccc
Confidence 578999999996 34 9999999853 46899999999999999999999975 6799999999831 0
Q ss_pred CCCCCCcCCCccEEEEEeccc
Q 045512 442 NGSKDDAIDQRIGKVRIRLST 462 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~ 462 (782)
...+..++|+++|++.|.|+.
T Consensus 72 ~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 72 VKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccCcccEEEEEEEEECH
Confidence 000112389999888777654
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-13 Score=124.31 Aligned_cols=118 Identities=25% Similarity=0.399 Sum_probs=93.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------------eeeecccccCCCCCCcc-cceeEEEecCCCCCeEEE
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-------------LVRVTRPSHVRSVNPVW-NEEHMFVASEPFEDLIIV 268 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-------------~~~kT~~~~~~t~nP~w-ne~f~f~v~~~~~~~L~i 268 (782)
.+.|++++|++|+ .+..|++||||++.+.. +.++|+++++ +.||.| ||.|.|.+. ..+.|.|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~--~~~~L~v 77 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGL--PTDVLEI 77 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcC--CCCEEEE
Confidence 3679999999998 67789999999999952 3689999986 999999 999999985 3568999
Q ss_pred EEEEccCCCC---CceeEEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEE
Q 045512 269 TVEDRIGPGK---DEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRF 335 (782)
Q Consensus 269 ~V~d~d~~~~---d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v 335 (782)
+|||++..++ +++||++.++++++... ........||+|.... .....+|+|.+++
T Consensus 78 ~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~--~~~~~~~~~~~l~k~~---------~~s~v~G~~~l~~ 136 (137)
T cd08691 78 EVKDKFAKSRPIIRRFLGKLSIPVQRLLER--HAIGDQELSYTLGRRT---------PTDHVSGQLTFRF 136 (137)
T ss_pred EEEecCCCCCccCCceEEEEEEEHHHhccc--ccCCceEEEEECCcCC---------CCCcEEEEEEEEe
Confidence 9999875433 79999999999999864 2333467899988653 2345567777654
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-13 Score=123.25 Aligned_cols=116 Identities=21% Similarity=0.325 Sum_probs=92.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE------CCEEEeeccccCCC-CCccccEEEEEEeCCC-ceEEEEEEeC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKY------GNKWIRTRTILDTL-DPRWNEQYTWEVYDPC-TVITIGVFDN 438 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~------~~~~~~T~~~~~t~-nP~wne~~~f~v~~~~-~~l~i~V~d~ 438 (782)
.|+|+|++|+||+.++. +..+. ||||++++ .....||+++.++. ||.|||+|.|.+..+. ..|.|+|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCC-CCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 68999999999997652 12355 99999999 34668999988776 9999999999998654 4799999999
Q ss_pred CCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 439 CHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+.. +|++||++.++++++..+. +|++|....... ...|.|.+.+++
T Consensus 82 ~~~-------~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-------DDDFLGQACLPLDSLRQGY---RHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CCC-------CCcEeEEEEEEhHHhcCce---EEEEecCCCCCC-CcceeEEEEEEE
Confidence 853 6899999999999997663 688987654321 234888888765
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-13 Score=122.59 Aligned_cols=98 Identities=23% Similarity=0.287 Sum_probs=80.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeCC----CceEEEEE
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLDPRWNEQYTWEVYDP----CTVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~~~f~v~~~----~~~l~i~V 435 (782)
.+.|+|+|++|++|++.+. .+. ||||++.+. ....||++++++.||.|||.|.|..... ...|.|+|
T Consensus 14 ~~~L~V~v~~a~~L~~~~~---~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDA---NGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred CCEEEEEEEEeeCCCCCCC---CCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 4789999999999997653 356 999999983 2468999999999999999999974432 45899999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEE
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYY 473 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 473 (782)
||++.+ .+++||++.++|++|..++....|+
T Consensus 91 ~d~~~~-------~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 91 LDEDRF-------GNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EEcCCc-------CCeeEEEEEEEcccCCCCcceEeec
Confidence 999864 5889999999999998877444444
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=124.99 Aligned_cols=97 Identities=19% Similarity=0.216 Sum_probs=81.6
Q ss_pred EEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-------EEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCC--
Q 045512 372 GILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-------WIRTRTILDTLDPRWNEQYTWEVYD-PCTVITIGVFDNCH-- 440 (782)
Q Consensus 372 ~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-------~~~T~~~~~t~nP~wne~~~f~v~~-~~~~l~i~V~d~~~-- 440 (782)
..++|++|++.+. .|. ||||++++.+. ..||+++++++||+|||.|.|.+.. ....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~---~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDV---LSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCC---CCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 3478999997754 356 99999999654 4899999999999999999998653 45689999999996
Q ss_pred --CCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 441 --VNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 441 --~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
.+ +|++||++.+++++|..+.....|++|..
T Consensus 82 ~~~~------~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 82 KDLS------DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCC------CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 54 89999999999999987776778999853
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-13 Score=125.79 Aligned_cols=103 Identities=26% Similarity=0.383 Sum_probs=87.8
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCCC--CCeEEEEEEEcc
Q 045512 202 YYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEPF--EDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~d~d 274 (782)
+.|.|+|++|++|+..+..+.+||||++.+.+ ...+|+++.+ +.||.|||+|.|.+.... ...|.|+|||.+
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~ 92 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD 92 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence 46999999999999998888999999999864 2568888886 999999999999986543 567999999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 275 GPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
..+++++||++.+++++ .. ...++|++|...
T Consensus 93 ~~~~~~~lG~~~i~l~~-~~------~~~~~W~~l~~~ 123 (134)
T cd00276 93 SVGRNEVIGQVVLGPDS-GG------EELEHWNEMLAS 123 (134)
T ss_pred CCCCCceeEEEEECCCC-CC------cHHHHHHHHHhC
Confidence 88899999999999998 32 236788888765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-13 Score=123.52 Aligned_cols=89 Identities=26% Similarity=0.421 Sum_probs=80.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCee--eecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCce
Q 045512 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLV--RVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEI 281 (782)
Q Consensus 204 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~--~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~ 281 (782)
|+|.|++|++|+..+..+.+||||++.++++. .+|+++++ +.||.|||+|.|.+..+....|.|+|||++..++|++
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 78999999999999999999999999999865 46777776 9999999999999877767889999999999999999
Q ss_pred eEEEEEeCCCcc
Q 045512 282 LGREFIPVRNVP 293 (782)
Q Consensus 282 lG~~~i~l~~l~ 293 (782)
||++.+++.+..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999998765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-13 Score=169.27 Aligned_cols=118 Identities=19% Similarity=0.295 Sum_probs=99.9
Q ss_pred ccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCC-CCeEEEEEEeCCC
Q 045512 35 LVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQ-SNLVEVTVKDKDI 112 (782)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~-~~~L~v~V~d~d~ 112 (782)
+..-.|.|.|+|++|+||. +..|++||||++++|++ +.||++++++.||+|||.|.|.++++. +..|+|+|||+|.
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 3446799999999999998 33799999999999965 889999999999999999999988864 4679999999999
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceE---EEEEE
Q 045512 113 GKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGE---IMLAV 162 (782)
Q Consensus 113 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~---l~l~~ 162 (782)
++++.||++.|++.++..++. ...||+|.+..++. |. |.+.+
T Consensus 2053 f~kd~~G~~~i~l~~vv~~~~-----~~~~~~L~~~~~k~---G~~~~~~~e~ 2097 (2102)
T PLN03200 2053 FGKSSLGKVTIQIDRVVMEGT-----YSGEYSLNPESNKD---GSSRTLEIEF 2097 (2102)
T ss_pred cCCCCCceEEEEHHHHhcCce-----eeeeeecCcccccC---CCcceEEEEE
Confidence 966699999999999987653 67899998643222 66 77776
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-13 Score=120.60 Aligned_cols=88 Identities=23% Similarity=0.363 Sum_probs=76.1
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEECCe------eeeeccccCCCCCeeccEEEEEeccCC----CCeEEEEEEeCCC
Q 045512 43 FVNVVKARNLPVMDVSGSLDPYVEVKLGNY------KGIAKHLEKNQNPVWNQIFAFSKERLQ----SNLVEVTVKDKDI 112 (782)
Q Consensus 43 ~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~------~~~T~~i~~t~nP~wne~f~f~~~~~~----~~~L~v~V~d~d~ 112 (782)
.+-.++|++|+..|..|.+||||+|++.+. .++|+++++++||+|| +|.|....+. ...|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 345679999999999999999999998653 5899999999999999 7888765432 5789999999999
Q ss_pred C-CCceeEEEEEEccccCCC
Q 045512 113 G-KDDFVGRVTFDLFEVPHR 131 (782)
Q Consensus 113 ~-~d~~lG~~~i~l~~l~~~ 131 (782)
. +|++||++.+++.++...
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 8 999999999999999854
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-13 Score=145.26 Aligned_cols=120 Identities=28% Similarity=0.522 Sum_probs=105.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCC--------
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI-------- 112 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~-------- 112 (782)
.+.++|+.|.+|.++|..|++||||.+.+|..+.+|++|...+||+|||.|.|..+.. +..+.+.|||.|.
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlksklrq 374 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLKSKLRQ 374 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999884 6889999999985
Q ss_pred -C---CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccC
Q 045512 113 -G---KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQA 168 (782)
Q Consensus 113 -~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 168 (782)
. +|||+|+..|.+..|... .+.||.|+....++...|.|++.+.+...+
T Consensus 375 kl~resddflgqtvievrtlsge-------mdvwynlekrtdksavsgairlhisveikg 427 (1283)
T KOG1011|consen 375 KLTRESDDFLGQTVIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHISVEIKG 427 (1283)
T ss_pred HhhhcccccccceeEEEEecccc-------hhhhcchhhccchhhccceEEEEEEEEEcC
Confidence 1 789999999999888643 678999998876665568888887665433
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.9e-13 Score=111.80 Aligned_cols=81 Identities=38% Similarity=0.578 Sum_probs=74.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~ 117 (782)
|.|+|++|+||+..+..+.+||||++++++ ..++|+++.++.||.|||.|.|.+.......|.|+|||++.. +|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999998 569999999999999999999998776677799999999999 7999
Q ss_pred eEEEE
Q 045512 118 VGRVT 122 (782)
Q Consensus 118 lG~~~ 122 (782)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99984
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=115.19 Aligned_cols=92 Identities=23% Similarity=0.238 Sum_probs=74.1
Q ss_pred EEEEeeCCCCCCCCCCCCC-CcEEEEEECCE------EEeeccccCCCCCccccEEEEEEeC-----CCceEEEEEEeCC
Q 045512 372 GILSAKNLMPMTSKDGKLT-DAYCVAKYGNK------WIRTRTILDTLDPRWNEQYTWEVYD-----PCTVITIGVFDNC 439 (782)
Q Consensus 372 ~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~------~~~T~~~~~t~nP~wne~~~f~v~~-----~~~~l~i~V~d~~ 439 (782)
..++|++|+.++. .|. ||||++++.+. .++|+++++++||+|| .|.|++.+ +...|.|+|||++
T Consensus 5 ~~i~a~~L~~~d~---~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 5 LQFSGKKLDKKDF---FGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEeCCCCCCCC---CCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 4579999997764 356 99999998542 5899999999999999 78887642 2568999999999
Q ss_pred CCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEc
Q 045512 440 HVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 475 (782)
..+ +|++||++.+++++|..++ .+++.+
T Consensus 81 ~~~------~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 81 SSG------KHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred CCC------CCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 876 8999999999999998554 344443
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-12 Score=131.02 Aligned_cols=228 Identities=18% Similarity=0.230 Sum_probs=164.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEe--cCC-CCCeEEEEEEEcc
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVA--SEP-FEDLIIVTVEDRI 274 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v--~~~-~~~~L~i~V~d~d 274 (782)
.+..+|..|++|..++.++..|||++..++. .+++|++..+ +.||.|+|...+.. .+. ....+++.|.|.+
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhheeeccCc
Confidence 5789999999999999999999999999973 4578888876 99999999865543 222 2345888999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccccccCCCCCCCCCCC
Q 045512 275 GPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDL 354 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~~~~~~~~~~~d~ 354 (782)
.+...+++|+..+.+..+..++ +.....|+.-.-+.. .....+.+..|.+.+++.++
T Consensus 173 ~~~~~~sqGq~r~~lkKl~p~q---~k~f~~cl~~~lp~~----rad~~~~E~rg~i~isl~~~---------------- 229 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLKPLQ---RKSFNICLEKSLPSE----RADRDEDEERGAILISLAYS---------------- 229 (362)
T ss_pred ccccccCcccchhhhhccChhh---cchhhhhhhccCCcc----cccccchhhccceeeeeccC----------------
Confidence 9989999999999888877543 223445544333310 00011134557766665322
Q ss_pred CccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCC-
Q 045512 355 QPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDP- 427 (782)
Q Consensus 355 ~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~- 427 (782)
....-+.|.+++|..|..+|+ +|- ||||..++.. .+.+|.+.+++++|.||++|.|.+...
T Consensus 230 ---------s~~~~l~vt~iRc~~l~ssDs---ng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgd 297 (362)
T KOG1013|consen 230 ---------STTPGLIVTIIRCSHLASSDS---NGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGD 297 (362)
T ss_pred ---------cCCCceEEEEEEeeeeecccc---CCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccc
Confidence 223457889999999998765 355 9999999853 247999999999999999999998742
Q ss_pred --CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEE
Q 045512 428 --CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYP 474 (782)
Q Consensus 428 --~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 474 (782)
...+.|.|+|.+.- .+.+++|-+...+... +....+|+.
T Consensus 298 La~~kv~lsvgd~~~G------~s~d~~GG~~~g~~rr--~~v~~h~gr 338 (362)
T KOG1013|consen 298 LAYKKVALSVGDYDIG------KSNDSIGGSMLGGYRR--GEVHKHWGR 338 (362)
T ss_pred hhcceEEEeecccCCC------cCccCCCccccccccc--chhhcCccc
Confidence 44899999998852 3678888877665443 333455554
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-12 Score=142.33 Aligned_cols=257 Identities=23% Similarity=0.260 Sum_probs=165.9
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-
Q 045512 37 EQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYK--GIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG- 113 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~- 113 (782)
+....++|.|++|-+|.+.|.+|.+||||++.+|++. -++..+.+|+||+|++.|.+....+....+.+.|||+|..
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 3455778999999999999999999999999999875 6788999999999999999998888888999999999999
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC-------------------CCc--ccceEEEEEEEEcccCC---
Q 045512 114 KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK-------------------GDK--ITQGEIMLAVWIGTQAD--- 169 (782)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-------------------~~~--~~~G~l~l~~~~~~~~d--- 169 (782)
+|+.||+..++|.+-............+-|.....+ +.+ .-.++. ..+.+....+
T Consensus 690 ~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d 768 (1105)
T KOG1326|consen 690 QDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYD 768 (1105)
T ss_pred ccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhc
Confidence 899999999999865432221122233333332221 100 001111 1222221111
Q ss_pred ---------cccccccc----------------ccc--------ccccccc------------ccccccccccCCceEEE
Q 045512 170 ---------ESFSEAWH----------------SDA--------HNISQTN------------LANTISKVYFSPKLYYL 204 (782)
Q Consensus 170 ---------~~~~~~~~----------------~~~--------~~~~~~~------------~~~~~~~~~~~p~~~~L 204 (782)
......|. ... ++..... -+..-..-.++|..+.+
T Consensus 769 ~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~l 848 (1105)
T KOG1326|consen 769 EKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYEL 848 (1105)
T ss_pred ccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeE
Confidence 00000000 000 0000000 00000112345677889
Q ss_pred EEEEEEeeCCCCCCCC----CCCCcEEEEEECC---eeeecccccC---CCCCCcccceeEEEecC--------------
Q 045512 205 RVFVFEAQDLVPSEEG----RAPDAYVKIQLGN---LVRVTRPSHV---RSVNPVWNEEHMFVASE-------------- 260 (782)
Q Consensus 205 ~V~V~~a~~L~~~d~~----g~~dpyv~v~lg~---~~~kT~~~~~---~t~nP~wne~f~f~v~~-------------- 260 (782)
+|.|..-.++...|.. ..+|.||+-.+-+ ++++|.+.++ +-.|-.|.-.|.|....
T Consensus 849 rviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~w 928 (1105)
T KOG1326|consen 849 RVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSW 928 (1105)
T ss_pred EEEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhcc
Confidence 9999988887765543 3589999987753 4566665443 24456676555553210
Q ss_pred -------CCCCeEEEEEEEccCCCCCceeEEEEEeCCCccc
Q 045512 261 -------PFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQ 294 (782)
Q Consensus 261 -------~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~ 294 (782)
.....|.|+|||.|.+++|++||..+++|+++..
T Consensus 929 s~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~ 969 (1105)
T KOG1326|consen 929 SLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPA 969 (1105)
T ss_pred ccccccccCchheEEEecccCccChhhhhhheeechhhCcC
Confidence 0023699999999999999999999999998874
|
|
| >PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=133.19 Aligned_cols=175 Identities=24% Similarity=0.364 Sum_probs=119.2
Q ss_pred eeeecchhhHHHHHHHHHH---HHH---HHhhhccccCCchhhHHHHHHHHHHHHcCch--h-HHHHHHHHHHHHhhccc
Q 045512 563 MWSLRKSKANFQRIMELFS---AIC---RWFNDICTWRNPVETVLLHVLFLILVFYPEL--I-LPTIFLYLFLIGMWNYR 633 (782)
Q Consensus 563 ~~s~~~~~~n~~rl~~~~~---~~~---~~~~~~~~W~~p~~s~~~~~~~~~~~~~~~l--~-~p~~~l~l~~~~~~~~~ 633 (782)
.+|+..+..|+.|+...+. .++ +.+.++++|++|..|+.++++|+++|++|.+ + +|++++ ++++++..|.
T Consensus 2 ~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~l-l~~il~~~yl 80 (359)
T PF06398_consen 2 PLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLL-LFGILLPSYL 80 (359)
T ss_pred CcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3577788999999999888 566 9999999999999999999999999999988 3 565554 3445555555
Q ss_pred cCCCCCCCCCCcccccccccccccccccCCCcccccccCCCCCCCChHHHHHHHHHHHHhHhhHHHHHHHHhhHHHHHhh
Q 045512 634 FRPRHPPQVDAKLSQAINAHLDELVKEFDTSDELDEEFDSFPTSRPSDTVRMRYERLRSVGGQLQTVVGDLASQCERVQA 713 (782)
Q Consensus 634 ~~~~~p~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~~~~~a~~~e~~~~ 713 (782)
.++..+.. .... . ..+.+.+.+..|+-.+. -++-+.+|++ +||.|+.+.+.++.+..
T Consensus 81 ~~~p~~~~--~~~~-----~----------~~~~~~~~~~~ptl~~~--s~e~~~nL~d----lQn~m~~~~~~~d~~~~ 137 (359)
T PF06398_consen 81 YRHPSPTS--SLPK-----S----------YEDHNPEPSEGPTLDKP--SREIVMNLRD----LQNKMEDLSDPYDFLSS 137 (359)
T ss_pred eecCCCcc--cccc-----c----------ccccCCCcCCCCCcchh--HHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 55422111 0000 0 00111111111111100 2344555555 88888888888888875
Q ss_pred ----hhcccCchhHHHHHHHHHHHHHHH----hhhhhhhhHhhhhhh-hccCCCCCC
Q 045512 714 ----ILCWRDLRATFIFLIFSFIWAVFS----YVTPFQVVAVLIGLY-MLRHPRFRS 761 (782)
Q Consensus 714 ----l~~w~~p~~s~~~~~~l~~~~~~~----~~vP~r~i~l~~g~~-~lr~P~~~~ 761 (782)
+++|+++..|.+++++|+++.+.+ ++||+|++++++|.. ++.||..++
T Consensus 138 ~~~~~~~f~~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~ 194 (359)
T PF06398_consen 138 FLYPYLNFSDENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQ 194 (359)
T ss_pred hhcccccCCccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHH
Confidence 457999999998887777666654 468999999999843 678998764
|
Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p []. |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-11 Score=132.00 Aligned_cols=124 Identities=26% Similarity=0.381 Sum_probs=99.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC--
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVN-- 442 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~-- 442 (782)
...+.++|+.|+||.+.| ..|+ ||||.+.+|..+.||+++...+||+|||.|.|.+.+....|.+.|||+|.--
T Consensus 294 sakitltvlcaqgl~akd---ktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlks 370 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKD---KTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKS 370 (1283)
T ss_pred ceeeEEeeeecccceecc---cCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHH
Confidence 367899999999999765 3477 9999999999999999999999999999999999998889999999998411
Q ss_pred ---CCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 443 ---GSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 443 ---~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
-+-...+|+|||+..|.+..|.. ..+-||+|.....+.. -+|.|.|.|.+
T Consensus 371 klrqkl~resddflgqtvievrtlsg--emdvwynlekrtdksa-vsgairlhisv 423 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTDKSA-VSGAIRLHISV 423 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEeccc--chhhhcchhhccchhh-ccceEEEEEEE
Confidence 00015689999999999999854 3478999987654432 25766666554
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.1e-11 Score=102.24 Aligned_cols=82 Identities=32% Similarity=0.493 Sum_probs=74.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCc
Q 045512 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGN---LVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDE 280 (782)
Q Consensus 204 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~ 280 (782)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.+ +.+|.|+|.|.|.+.....+.|.|+|||++..++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 689999999999988888999999999987 6799999987 899999999999987776777999999999998899
Q ss_pred eeEEEE
Q 045512 281 ILGREF 286 (782)
Q Consensus 281 ~lG~~~ 286 (782)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.23 E-value=8e-11 Score=102.67 Aligned_cols=99 Identities=42% Similarity=0.626 Sum_probs=86.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCceeE
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN-YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFVG 119 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~lG 119 (782)
|.|+|++|++|......+.++|||.+.+.+ ..++|+++.++.||.|||.|.|.+.......|.|+||+.+.. ++.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 479999999999876678899999999998 889999999999999999999998875568899999999988 789999
Q ss_pred EEEEEccccC-CCCCCCCCCCCeEEEe
Q 045512 120 RVTFDLFEVP-HRVPPDSPLAPQWYRL 145 (782)
Q Consensus 120 ~~~i~l~~l~-~~~~~~~~~~~~w~~L 145 (782)
.+.+++.++. ... ...+|++|
T Consensus 81 ~~~~~l~~l~~~~~-----~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGK-----EGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCC-----cCcceecC
Confidence 9999999998 322 25677764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.1e-11 Score=106.90 Aligned_cols=93 Identities=17% Similarity=0.231 Sum_probs=76.9
Q ss_pred EEEEEEEeeCCCCCCCCCC-CCC-CcEEEEEECC---EEEeeccccCCCC--CccccEEEEEEeCC--------------
Q 045512 369 LELGILSAKNLMPMTSKDG-KLT-DAYCVAKYGN---KWIRTRTILDTLD--PRWNEQYTWEVYDP-------------- 427 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~-~~~-dpyv~v~~~~---~~~~T~~~~~t~n--P~wne~~~f~v~~~-------------- 427 (782)
|+|.|++|+|++..+.... ... ||||++.+.+ .+.+|.++++++| |.||+.|.|++.-+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7999999999775443212 223 9999999964 5689999999999 99999999987641
Q ss_pred ----------CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCc
Q 045512 428 ----------CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 428 ----------~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
...|.|+|||+|.++ +|++||.++++|+.+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFS------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccC------CCCcceEEEEEhhhccccc
Confidence 247999999999987 8999999999999997765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=132.00 Aligned_cols=126 Identities=19% Similarity=0.266 Sum_probs=105.0
Q ss_pred eEEEEEEEEeeCCCCCCC---------------CCCCCC-CcEEEEEECCEE-EeeccccCC-CCCccccEEEEEEeCCC
Q 045512 367 GILELGILSAKNLMPMTS---------------KDGKLT-DAYCVAKYGNKW-IRTRTILDT-LDPRWNEQYTWEVYDPC 428 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~---------------~~~~~~-dpyv~v~~~~~~-~~T~~~~~t-~nP~wne~~~f~v~~~~ 428 (782)
|.|.++|++|++|++++. ..+.+. ||||.|.+++.+ .||+++.+. .||.|||.|.+++..+.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 889999999999986421 012344 999999998865 699999884 69999999999999988
Q ss_pred ceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEEECc
Q 045512 429 TVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTCTA 499 (782)
Q Consensus 429 ~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~ 499 (782)
+.++|+|.|.|.++ ..+||++.||+.+|..|..+++|+++.+...+-.+...+|+++++|.+..
T Consensus 88 ~~v~f~vkd~~~~g-------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 88 SNIIFTVKDDNPIG-------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred ceEEEEEecCCccC-------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 99999999999885 56999999999999999999999999986543333345899999997743
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=100.74 Aligned_cols=91 Identities=40% Similarity=0.592 Sum_probs=81.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCce
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNY---KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~---~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~ 117 (782)
|.|+|++|++|......+..+|||++++.+. .++|+++.++.||.|||+|.|.+.......|.|+|||.+.. .+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6899999999998876578999999999875 79999999999999999999998876578999999999987 7999
Q ss_pred eEEEEEEccccCCCC
Q 045512 118 VGRVTFDLFEVPHRV 132 (782)
Q Consensus 118 lG~~~i~l~~l~~~~ 132 (782)
+|.+.+++.++..+.
T Consensus 82 ~G~~~~~l~~~~~~~ 96 (101)
T smart00239 82 IGQVTIPLSDLLLGG 96 (101)
T ss_pred eEEEEEEHHHcccCc
Confidence 999999999987654
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=124.61 Aligned_cols=116 Identities=17% Similarity=0.247 Sum_probs=94.6
Q ss_pred cEEEEEEEEeecCCCC-----CCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEe
Q 045512 40 HYLFVNVVKARNLPVM-----DVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKD 109 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~-----d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d 109 (782)
..|.|+|+.|.+++.. +.....||||+|.+.| .+++|++..++.||+|||+|.|.+..++-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 4799999999998521 2234679999999976 35678877788899999999999988887889999999
Q ss_pred CCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEE
Q 045512 110 KDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVW 163 (782)
Q Consensus 110 ~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 163 (782)
+|.. +++|+|++.+++..|..+- ++.+|.+..|.....-.|.+.+.
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~Gy--------R~VpL~~~~g~~l~~~~Ll~~f~ 535 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGI--------RAVPLYDERGKACSSTMLLTRFK 535 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCc--------eeEeccCCCcCCCCCceEEEEEE
Confidence 9987 8999999999999998753 56799988887654456666654
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-10 Score=99.69 Aligned_cols=98 Identities=29% Similarity=0.503 Sum_probs=83.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-KWIRTRTILDTLDPRWNEQYTWEVYD-PCTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-~~~~T~~~~~t~nP~wne~~~f~v~~-~~~~l~i~V~d~~~~~~~~ 445 (782)
|.|.|++|++|.... ..+. +|||.+.+.+ ...+|+++.++.||.|||.|.|++.. ....|.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~~---~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAKD---LNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCcC---CCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 468999999998542 2345 9999999988 88999999999999999999999997 5678999999998754
Q ss_pred CCcCCCccEEEEEeccccc-CCcEEEEEEEc
Q 045512 446 DDAIDQRIGKVRIRLSTLE-TDRLYTHYYPL 475 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 475 (782)
.+.+||++.+++.++. .......|++|
T Consensus 75 ---~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 ---KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ---CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6899999999999998 66656677764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-10 Score=104.05 Aligned_cols=91 Identities=26% Similarity=0.279 Sum_probs=77.9
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEECC---eeeeeccccCCCC--CeeccEEEEEecc---------------
Q 045512 42 LFVNVVKARNLPVMD--VSG--SLDPYVEVKLGN---YKGIAKHLEKNQN--PVWNQIFAFSKER--------------- 97 (782)
Q Consensus 42 L~V~v~~a~~L~~~d--~~g--~~dPyv~v~~~~---~~~~T~~i~~t~n--P~wne~f~f~~~~--------------- 97 (782)
|+|.|.+|+|++..+ ..| .+||||++.+.+ .+.+|.|.++++| |+||+.|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999976543 356 499999999986 4789999999999 9999999997543
Q ss_pred --------CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCC
Q 045512 98 --------LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRV 132 (782)
Q Consensus 98 --------~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~ 132 (782)
.....|.++|||.|.+ +|+++|++.++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 2357899999999999 9999999999999988754
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-10 Score=98.13 Aligned_cols=90 Identities=33% Similarity=0.493 Sum_probs=77.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE---EEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK---WIRTRTILDTLDPRWNEQYTWEVYDP-CTVITIGVFDNCHVNG 443 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~---~~~T~~~~~t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~~~~ 443 (782)
+.|.|++|++|..... .+. +|||++++.+. ..+|+++.++.||.|||.|.|.+..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~~~---~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKKDK---KGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCCCC---CCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 6789999999986432 134 99999999874 79999999999999999999999987 789999999998653
Q ss_pred CCCCcCCCccEEEEEecccccCCc
Q 045512 444 SKDDAIDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
.+.++|.+.+++.++..+.
T Consensus 78 -----~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 -----RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred -----CCceeEEEEEEHHHcccCc
Confidence 6899999999999987665
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.9e-10 Score=122.18 Aligned_cols=220 Identities=19% Similarity=0.293 Sum_probs=130.7
Q ss_pred CCCceeeecchhhHHHHHHHHHH----HHHHHhhhccccCCchhhHHHHHHHHHHHHcCchhHHHHHHHHHHHHh----h
Q 045512 559 VDYHMWSLRKSKANFQRIMELFS----AICRWFNDICTWRNPVETVLLHVLFLILVFYPELILPTIFLYLFLIGM----W 630 (782)
Q Consensus 559 ~~~~~~s~~~~~~n~~rl~~~~~----~~~~~~~~~~~W~~p~~s~~~~~~~~~~~~~~~l~~p~~~l~l~~~~~----~ 630 (782)
++...||..++++|+.|+..-+- .+.+.+.++.+|++|.+|+.++++|.+ +|+.++++|+++..++.+.+ +
T Consensus 83 a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~-aW~~dll~p~~~~~L~~li~~P~~r 161 (642)
T PF11696_consen 83 AEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFI-AWLLDLLVPAFFAFLIALILSPPAR 161 (642)
T ss_pred cccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccc
Confidence 67888999999999999976433 889999999999999999999999988 78889999999876665555 5
Q ss_pred ccccCCCCCCCCCCccccc-----------ccccc-------c---c----------------ccccc--CCCccccccc
Q 045512 631 NYRFRPRHPPQVDAKLSQA-----------INAHL-------D---E----------------LVKEF--DTSDELDEEF 671 (782)
Q Consensus 631 ~~~~~~~~p~~~~~~~s~~-----------~~~~~-------~---~----------------~~~~~--~~~~~~~~e~ 671 (782)
.+.+.|.+++.++....+. +++.. | + ..+.. .++++ +++.
T Consensus 162 ~~lFPpap~alvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAvEqEAsNfV~siasvav~saaGK~~q~~p~~-~~~~ 240 (642)
T PF11696_consen 162 SILFPPAPPALVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAVEQEASNFVNSIASVAVSSAAGKHPQGDPDD-DPEE 240 (642)
T ss_pred cccCCCCCcccccCCCCCccccccccccccccccCCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCccc-CCcc
Confidence 5566555544444322211 11110 0 0 00000 00111 0000
Q ss_pred CCCC--------------------CCCChHHHHHHH-HHHHHhHhhHHHHHHHHhhHHHHHhhhhcccCchhHH----HH
Q 045512 672 DSFP--------------------TSRPSDTVRMRY-ERLRSVGGQLQTVVGDLASQCERVQAILCWRDLRATF----IF 726 (782)
Q Consensus 672 ~~~~--------------------~~~~~~~~~~~~-~~l~~~~~~vQ~~~~~~a~~~e~~~~l~~w~~p~~s~----~~ 726 (782)
+..| .....+..++-+ ..+-+.+..++..++++++..||+-|.|+=+-|+-.. .+
T Consensus 241 ~~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~~~v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~RlRL 320 (642)
T PF11696_consen 241 DSEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMKEAVWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPRLRL 320 (642)
T ss_pred CCCCChhhhhHhhhhhhhhccCCCCCCccchhhchHHHHHHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHHHHH
Confidence 0000 000112222222 2344556679999999999999999999877776431 11
Q ss_pred HHHHHHHHHHHhhh----hhhhhHhhhhhhhccCCCCC-------CCCCC-----cc-hhhhccCCCCcCC
Q 045512 727 LIFSFIWAVFSYVT----PFQVVAVLIGLYMLRHPRFR-------SKMPS-----VP-VNFFKSFPSKSDM 780 (782)
Q Consensus 727 ~~~l~~~~~~~~~v----P~r~i~l~~g~~~lr~P~~~-------~~~~~-----~~-~~~~~r~ps~~d~ 780 (782)
..+++-++++.+|+ =.|.+-++.|+-++..|-++ .++|+ ++ .-.|+.||+|+.+
T Consensus 321 a~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFGdPiI~r~~~~Lnr~~P~W~k~leLrntlLkGVPTNAQL 391 (642)
T PF11696_consen 321 AAILAPLLLASLFVSSYMFVKGTTFGFGFGFFGDPIITRGIDYLNRKYPNWQKLLELRNTLLKGVPTNAQL 391 (642)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCchHHH
Confidence 12222222233333 34545555666666665533 23344 12 3468999999864
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=122.40 Aligned_cols=116 Identities=25% Similarity=0.386 Sum_probs=94.0
Q ss_pred cEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEE
Q 045512 40 HYLFVNVVKARNLPVM------DVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVK 108 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~ 108 (782)
..|.|+|+.|.+|+.. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 4799999999997532 1113359999999965 4779999999999999999999988877788999999
Q ss_pred eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEE
Q 045512 109 DKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVW 163 (782)
Q Consensus 109 d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 163 (782)
|+|.. +++++|++++++..|..+. +|++|.+..|.....-.|.+.++
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~Gy--------R~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPGI--------RSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCCc--------eeEeCcCCCCCCCCCEEEEEEEE
Confidence 99988 8999999999999998753 58999988887643345555554
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=117.27 Aligned_cols=249 Identities=20% Similarity=0.206 Sum_probs=160.0
Q ss_pred eeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEEccC----CCCCceeEEEEEeCCCcccccCCCCCCCCeeEEc
Q 045512 234 LVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVEDRIG----PGKDEILGREFIPVRNVPQRHETTKLPDPRWFNL 309 (782)
Q Consensus 234 ~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 309 (782)
+..+|..+.+ .+||.|.+.|.........+.++++++|.+. ....+++|++...++++.... ....-+.+
T Consensus 41 e~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~-----~~~~~l~~ 114 (529)
T KOG1327|consen 41 EVGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS-----GLTGPLLL 114 (529)
T ss_pred cccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh-----hhhhhhhc
Confidence 3457888886 9999999999988887778899999999775 356789999999999987532 11111222
Q ss_pred cCCCCCcccccccccceecceEEEEEEeccccccCCCCCCCCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCC
Q 045512 310 HKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKL 389 (782)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~ 389 (782)
++.. ....|.|.+.+. .. .......+ -.++|.+|.+.|.. +
T Consensus 115 ~~~~-----------~~~~g~iti~ae--e~----------------------~~~~~~~~-~~~~~~~ld~kd~f---~ 155 (529)
T KOG1327|consen 115 KPGK-----------NAGSGTITISAE--ED----------------------ESDNDVVQ-FSFRAKNLDPKDFF---S 155 (529)
T ss_pred ccCc-----------cCCcccEEEEee--cc----------------------cccCceee-eeeeeeecCccccc---c
Confidence 2211 112355555442 21 01112222 33568899876543 6
Q ss_pred C-CcEEEEEEC---C---EEEeeccccCCCCCccccEEEEEEe-----CCCceEEEEEEeCCCCCCCCCCcCCCccEEEE
Q 045512 390 T-DAYCVAKYG---N---KWIRTRTILDTLDPRWNEQYTWEVY-----DPCTVITIGVFDNCHVNGSKDDAIDQRIGKVR 457 (782)
Q Consensus 390 ~-dpyv~v~~~---~---~~~~T~~~~~t~nP~wne~~~f~v~-----~~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~ 457 (782)
+ |||..+.-. + ..++|.+++++++|.|. .|.++.. ++...+.|.|||++.-+ ++++||++.
T Consensus 156 ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~------~~~~ig~~~ 228 (529)
T KOG1327|consen 156 KSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNG------KHDLIGKFQ 228 (529)
T ss_pred cCCcceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCC------CcCceeEec
Confidence 6 999988652 2 24799999999999998 4444443 34568999999999754 789999999
Q ss_pred EecccccCCcEEEEEEEceeeCCCCCc----cccEEEEE-----------------EEEEECchhhHHhhcCCCCCCcc-
Q 045512 458 IRLSTLETDRLYTHYYPLLVLTPSGLK----KNGELHLA-----------------LRFTCTAWVSMVTKYGMPLLPKM- 515 (782)
Q Consensus 458 i~l~~l~~~~~~~~~~~L~~~~~~g~~----~~G~i~l~-----------------~~~~~~~~~~~~~~~~~p~~p~~- 515 (782)
.+++++... .....+++...+.+..+ ..|.+.+. .+.+.....++..+++.|..|.+
T Consensus 229 tt~~~~~~~-~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~~sSL 307 (529)
T KOG1327|consen 229 TTLSELQEP-GSPNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRNPSSL 307 (529)
T ss_pred ccHHHhccc-CCcccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCCCCcc
Confidence 999998641 11223444433221111 13544433 01122335566777888888777
Q ss_pred CcCcccchhhHHHHHHHHHHHHHH
Q 045512 516 HYVQPIPVILIDRLRHQAMQIVAA 539 (782)
Q Consensus 516 ~~~~p~~~~~~~~~~~~~~~~~~~ 539 (782)
||..|-...+.+ +|++.+..
T Consensus 308 Hyi~p~~~N~Y~----~Ai~~vG~ 327 (529)
T KOG1327|consen 308 HYIDPHQPNPYE----QAIRSVGE 327 (529)
T ss_pred eecCCCCCCHHH----HHHHHHhh
Confidence 999886655554 55555543
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=123.73 Aligned_cols=122 Identities=18% Similarity=0.283 Sum_probs=103.1
Q ss_pred cEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCe-eeeeccccCC-CCCeeccEEEEEeccCC
Q 045512 40 HYLFVNVVKARNLPVMD------------------VSGSLDPYVEVKLGNY-KGIAKHLEKN-QNPVWNQIFAFSKERLQ 99 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d------------------~~g~~dPyv~v~~~~~-~~~T~~i~~t-~nP~wne~f~f~~~~~~ 99 (782)
|.|.|+|.+|++|+.++ ..+++||||.|.+++. ..||+++.+. .||.|||.|...+...
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~- 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM- 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC-
Confidence 68999999999998631 1357899999999985 6799999885 5999999999998775
Q ss_pred CCeEEEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCccc-ceEEEEEEEEccc
Q 045512 100 SNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKIT-QGEIMLAVWIGTQ 167 (782)
Q Consensus 100 ~~~L~v~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~-~G~l~l~~~~~~~ 167 (782)
...+.|.|+|.|.++..+||.+.+++.++..+.. .+.|+++.+.+|+... ...|+++++|...
T Consensus 87 ~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~-----i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEE-----VDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCccCceEEEEEEEEHHHhcCCCc-----cccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 4789999999999988899999999999988653 7899999998877643 2488899988753
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.9e-11 Score=129.00 Aligned_cols=126 Identities=28% Similarity=0.525 Sum_probs=107.7
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------e------------------eeeeccccCCCCC
Q 045512 37 EQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-------------Y------------------KGIAKHLEKNQNP 85 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------------~------------------~~~T~~i~~t~nP 85 (782)
.|...+.|.+.+|+||.++|.+|-+|||+...+-. + .+-|++.++|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 35667889999999999999999999999887721 0 1347899999999
Q ss_pred eeccEEEEEeccCCCCeEEEEEEeCCC---------------------------------C----CCceeEEEEEEcccc
Q 045512 86 VWNQIFAFSKERLQSNLVEVTVKDKDI---------------------------------G----KDDFVGRVTFDLFEV 128 (782)
Q Consensus 86 ~wne~f~f~~~~~~~~~L~v~V~d~d~---------------------------------~----~d~~lG~~~i~l~~l 128 (782)
.|+|.|.|.+++.+...+++.+||+|. . .|||+|...|+|.++
T Consensus 191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 999999999999999999999999872 1 489999999999999
Q ss_pred CCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccC
Q 045512 129 PHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQA 168 (782)
Q Consensus 129 ~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 168 (782)
.... .++||.|+..+.++...|.+++.+|+.+..
T Consensus 271 P~~G------ld~WFkLepRS~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 271 PPDG------LDQWFKLEPRSDKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred Ccch------HHHHhccCcccccccccceEEEEEEEeeec
Confidence 8753 689999999987776569999999997643
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-09 Score=116.87 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=89.3
Q ss_pred ceEEEEEEEEeeCCCCC--CCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCC-ceEEEEEE
Q 045512 366 IGILELGILSAKNLMPM--TSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDPC-TVITIGVF 436 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~--~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~~-~~l~i~V~ 436 (782)
...|.|+|+.++++... ...+.... ||||+|.+.| ...+|++..++.||.|||+|+|.+..|. ..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999998521 11112234 9999999955 3467877778999999999999998774 47999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEE
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALR 494 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 494 (782)
|+|..+ .|+++|+..+|++.|..|- ++++|.+.+.... ..-+|.++++
T Consensus 488 D~D~~~------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l-~~~~Ll~~f~ 535 (537)
T PLN02223 488 DYEVST------ADAFCGQTCLPVSELIEGI---RAVPLYDERGKAC-SSTMLLTRFK 535 (537)
T ss_pred ecCCCC------CCcEEEEEecchHHhcCCc---eeEeccCCCcCCC-CCceEEEEEE
Confidence 999755 7999999999999999985 6789876543222 2245555544
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.2e-09 Score=118.83 Aligned_cols=117 Identities=25% Similarity=0.339 Sum_probs=95.3
Q ss_pred cEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEE
Q 045512 40 HYLFVNVVKARNLPVM------DVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVK 108 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~ 108 (782)
..|.|+|+.|.+++.. +.....||||+|.+-| .+.+|++..++.||+|||+|.|.+..++-..|+|.|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 5799999999987522 2223579999999954 3578999889999999999999988877889999999
Q ss_pred eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 109 DKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 109 d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
|+|.. +|+|+|++++++..|..+- +..+|.+..|.....-.|.+.+++
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~Gy--------R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQGI--------HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhCcc--------ceEeccCCCcCCCCCCeeEEEEEe
Confidence 99997 9999999999999998753 356898888876444567666654
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.1e-09 Score=116.85 Aligned_cols=119 Identities=22% Similarity=0.243 Sum_probs=92.0
Q ss_pred ceEEEEEEEEeeCCCCCCC---CCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCC-ceEEEEE
Q 045512 366 IGILELGILSAKNLMPMTS---KDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDPC-TVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~---~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~~-~~l~i~V 435 (782)
...|.|+|+.|++++.... .+.... ||||+|.+-| .+.+|+++.++.||.|||+|.|++..|. ..++|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 4679999999999853111 122234 9999999844 5679999999999999999999998763 5799999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEE
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFT 496 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+|+|..+ .++++|+..||++.|..|. +|++|.+.. | ..-+..+|-++|.
T Consensus 549 ~D~D~~~------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~--G-~~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE------KDDFGGQTCLPVSELRPGI---RSVPLHDKK--G-EKLKNVRLLMRFI 597 (599)
T ss_pred EecCCCC------CCCeEEEEEcchhHhcCCc---eeEeCcCCC--C-CCCCCEEEEEEEE
Confidence 9998765 7999999999999999986 589997643 3 2235556666653
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.6e-09 Score=116.17 Aligned_cols=116 Identities=25% Similarity=0.418 Sum_probs=93.8
Q ss_pred cEEEEEEEEeecCC--CC----CCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEE
Q 045512 40 HYLFVNVVKARNLP--VM----DVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVK 108 (782)
Q Consensus 40 ~~L~V~v~~a~~L~--~~----d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~ 108 (782)
..|.|+|+.|.+++ .. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 47999999998853 11 1234579999999964 4679999999899999999999988777789999999
Q ss_pred eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEE
Q 045512 109 DKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVW 163 (782)
Q Consensus 109 d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 163 (782)
|+|.. +++|+|++.+++..|..+- +..+|.+..|.....-.|.+.+.
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~Gy--------R~V~L~~~~g~~l~~a~Lfv~~~ 579 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQGI--------RAFPLHSRKGEKYKSVKLLVKVE 579 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCcc--------ceEEccCCCcCCCCCeeEEEEEE
Confidence 99987 8999999999999998753 45689888887654356666654
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.5e-09 Score=111.68 Aligned_cols=119 Identities=26% Similarity=0.489 Sum_probs=99.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCcccc-EEEEEEeCC---CceEEEEEEeCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNE-QYTWEVYDP---CTVITIGVFDNCHV 441 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne-~~~f~v~~~---~~~l~i~V~d~~~~ 441 (782)
|.|.|+|..|++|+-||.. ... |.||.|++++..+||.+..+++||.||- -|.|.|.|. ...|.|.+.|+|..
T Consensus 3 gkl~vki~a~r~lpvmdka--sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA--SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccccc--cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 7889999999999998743 233 9999999999999999999999999994 689999863 55899999999998
Q ss_pred CCCCCCcCCCccEEEEEecccc----------cCCcEEEEEEEceeeCCCCCccccEEEEEEEEE
Q 045512 442 NGSKDDAIDQRIGKVRIRLSTL----------ETDRLYTHYYPLLVLTPSGLKKNGELHLALRFT 496 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l----------~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+ .++-||++.|+++.| -+|..+..|+|+.+.-. | -.|+|.+-+++.
T Consensus 81 s------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-g--irgeinvivkvd 136 (1169)
T KOG1031|consen 81 S------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-G--IRGEINVIVKVD 136 (1169)
T ss_pred c------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-c--ccceeEEEEEEe
Confidence 7 889999999999987 23567889999986432 3 258888877764
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.9e-09 Score=89.58 Aligned_cols=84 Identities=26% Similarity=0.387 Sum_probs=72.5
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCce
Q 045512 42 LFVNVVKARNLPVMD---VSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDF 117 (782)
Q Consensus 42 L~V~v~~a~~L~~~d---~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~ 117 (782)
|.|+|..|+|+.-.+ ..+.+||||.+++++. +.||++ +.||.|||+|.|+++. ...+.+.|||...-..-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGGDQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCCCeecc
Confidence 579999999998776 5788999999999986 889988 4899999999999964 688999999997656677
Q ss_pred eEEEEEEccccCC
Q 045512 118 VGRVTFDLFEVPH 130 (782)
Q Consensus 118 lG~~~i~l~~l~~ 130 (782)
||...+.+++|..
T Consensus 76 i~llW~~~sdi~E 88 (109)
T cd08689 76 VGLLWLRLSDIAE 88 (109)
T ss_pred eeeehhhHHHHHH
Confidence 8998888888754
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-08 Score=113.86 Aligned_cols=118 Identities=21% Similarity=0.331 Sum_probs=96.6
Q ss_pred cEEEEEEEEeecCCC---C---CCCCCCCcEEEEEECC-----eeeeeccccCCCCCee-ccEEEEEeccCCCCeEEEEE
Q 045512 40 HYLFVNVVKARNLPV---M---DVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVW-NQIFAFSKERLQSNLVEVTV 107 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~---~---d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~w-ne~f~f~~~~~~~~~L~v~V 107 (782)
..|.|+|+.|.+|+. . +.....||||+|.+-| .+++|+++.++.||+| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 369999999998742 1 1223479999999965 3679999988899999 99999998887778999999
Q ss_pred EeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 108 KDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 108 ~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
+|+|.. .++++|++.+++..|..+- +..+|.+..|.......|.+.+.+.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GY--------R~VpL~~~~G~~l~~atLfv~~~~~ 561 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGV--------RAVRLHDRAGKAYKNTRLLVSFALD 561 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCe--------eEEEccCCCCCCCCCeEEEEEEEEc
Confidence 999977 8999999999999997653 4579998888875547788887664
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.7e-09 Score=115.41 Aligned_cols=118 Identities=22% Similarity=0.374 Sum_probs=95.6
Q ss_pred cEEEEEEEEeecCCCC-C---CCCCCCcEEEEEECC-----eeeeecccc-CCCCCeeccEEEEEeccCCCCeEEEEEEe
Q 045512 40 HYLFVNVVKARNLPVM-D---VSGSLDPYVEVKLGN-----YKGIAKHLE-KNQNPVWNQIFAFSKERLQSNLVEVTVKD 109 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~-d---~~g~~dPyv~v~~~~-----~~~~T~~i~-~t~nP~wne~f~f~~~~~~~~~L~v~V~d 109 (782)
-.|.|+|+.+.+++.. + .+..+||||.|++-| ...+|+++. ++-||.|+|+|.|.+..++-..|+|.|+|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 3799999999977643 2 235689999999976 367899666 55599999999999998888999999999
Q ss_pred CCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 110 KDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 110 ~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
+|.. +|+|+|+.++|+..|..+- +-.+|.+..|.......|.+.+++.
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred cCCCCcccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEEEe
Confidence 9999 8999999999999998764 3358888887764446777777653
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.5e-08 Score=108.43 Aligned_cols=199 Identities=18% Similarity=0.233 Sum_probs=140.2
Q ss_pred CCCCCCCCCcEEEEEEC-------------------CeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-
Q 045512 54 VMDVSGSLDPYVEVKLG-------------------NYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG- 113 (782)
Q Consensus 54 ~~d~~g~~dPyv~v~~~-------------------~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~- 113 (782)
..|..++.||.|.+... .+..+|.++.+.+||.|-+.|.+.......+.|++.++|.+..
T Consensus 4 ~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~ 83 (529)
T KOG1327|consen 4 AYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRT 83 (529)
T ss_pred ccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCcc
Confidence 34445666777776652 1345899999999999999998876554568899999998764
Q ss_pred ----CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccCCcccccccccccccccccccc
Q 045512 114 ----KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDAHNISQTNLA 189 (782)
Q Consensus 114 ----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 189 (782)
..+|+|++...+..+....... ..|....+.....|+|.+.+.-....
T Consensus 84 ~~l~~~dflg~~~c~l~~ivs~~~~~-------~~l~~~~~~~~~~g~iti~aee~~~~--------------------- 135 (529)
T KOG1327|consen 84 PDLSSADFLGTAECTLSQIVSSSGLT-------GPLLLKPGKNAGSGTITISAEEDESD--------------------- 135 (529)
T ss_pred CCcchhcccceeeeehhhhhhhhhhh-------hhhhcccCccCCcccEEEEeeccccc---------------------
Confidence 7799999999999988654211 12222222222237777765211000
Q ss_pred ccccccccCCceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C----eeeecccccCCCCCCcccceeEEEecC---
Q 045512 190 NTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLG--N----LVRVTRPSHVRSVNPVWNEEHMFVASE--- 260 (782)
Q Consensus 190 ~~~~~~~~~p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg--~----~~~kT~~~~~~t~nP~wne~f~f~v~~--- 260 (782)
.....-.++|++|...|..+++|||..+.-- . ..++|+++++ +++|.|.. |......
T Consensus 136 ------------~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~ 201 (529)
T KOG1327|consen 136 ------------NDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAP-FSISLQSLCS 201 (529)
T ss_pred ------------CceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCcccc-cccchhhhcc
Confidence 0122334558999999999999999988653 2 4688999987 99999987 3333222
Q ss_pred -CCCCeEEEEEEEccCCCCCceeEEEEEeCCCccc
Q 045512 261 -PFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQ 294 (782)
Q Consensus 261 -~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~ 294 (782)
..+..+.+.+||++..++++++|.+..+++++..
T Consensus 202 ~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 202 KDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred cCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 2245799999999999999999999999998863
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-08 Score=87.06 Aligned_cols=85 Identities=24% Similarity=0.353 Sum_probs=69.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 045512 369 LELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKD 446 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~ 446 (782)
|.|+|..|+|+....+....+. ||||.|++++. +.||++ +.||.|||.|.|+| +....+.|.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~------ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGG------ 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCC------
Confidence 5789999999987653212344 99999999886 899988 58999999999999 557899999999852
Q ss_pred CcCCCccEEEEEeccccc
Q 045512 447 DAIDQRIGKVRIRLSTLE 464 (782)
Q Consensus 447 ~~~d~~lG~~~i~l~~l~ 464 (782)
+..-.||-.-|.+++|.
T Consensus 71 -~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIA 87 (109)
T ss_pred -CeecceeeehhhHHHHH
Confidence 35668999999999984
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-08 Score=111.67 Aligned_cols=120 Identities=16% Similarity=0.224 Sum_probs=90.2
Q ss_pred ceEEEEEEEEeeCCCCCCC---CCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCC-ceEEEEE
Q 045512 366 IGILELGILSAKNLMPMTS---KDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDPC-TVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~---~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~~-~~l~i~V 435 (782)
...|.|+|+.+++++.... .+.... ||||+|.+-| ...+|+++.++.||.|||+|+|++.-|. ..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 4679999999998753211 122234 9999999843 3478998899999999999999998763 5899999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|+|..+ .|+++|+..||++.|..|- +.++|.+...... ..-+|.+++.|
T Consensus 548 ~d~d~~~------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l-~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINE------KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKY-SSTRLLMRFEF 597 (598)
T ss_pred EECCCCC------CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCC-CCCeeEEEEEe
Confidence 9998754 8999999999999999985 4678876433221 22456655543
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.3e-08 Score=110.64 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=89.6
Q ss_pred ceEEEEEEEEeeCCC--C-CCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCC-ceEEEEE
Q 045512 366 IGILELGILSAKNLM--P-MTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDPC-TVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~--~-~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~~-~~l~i~V 435 (782)
...|.|+|+.+++++ . ....+.... ||||+|.+.| .+.||+++.++.||.|||.|+|.+..|. ..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999999853 1 111122234 9999999843 4579999999999999999999998764 5899999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
+|+|..+ .|+++|+..||++.|..|- +.++|.+...... ...+|.+++.|
T Consensus 531 ~d~D~~~------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l-~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSE------KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKY-KSVKLLVKVEF 580 (581)
T ss_pred EECCCCC------CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCC-CCeeEEEEEEe
Confidence 9998754 7899999999999999985 5678876433221 22455555443
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-08 Score=112.02 Aligned_cols=118 Identities=19% Similarity=0.303 Sum_probs=91.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC--CcEEEEEECCE-----EEeecc-ccCCCCCccccEEEEEEeCCC-ceEEEEEEeC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT--DAYCVAKYGNK-----WIRTRT-ILDTLDPRWNEQYTWEVYDPC-TVITIGVFDN 438 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~--dpyv~v~~~~~-----~~~T~~-~~~t~nP~wne~~~f~v~~~~-~~l~i~V~d~ 438 (782)
.|.|+|+.++|+.+.......|. ||||.|++-|. ..+|++ ..++-||.|+|+|+|++..|. .-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999998775432222233 99999998653 479995 456889999999999999874 5799999999
Q ss_pred CCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 439 CHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|..+ +|+|+|+..||++.|..|- +.+||.+..... -...+|.+++.+
T Consensus 697 d~~~------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~-~~~asLfv~i~~ 743 (746)
T KOG0169|consen 697 DYIG------KDDFIGQTTLPVSELRQGY---RHVPLLSREGEA-LSSASLFVRIAI 743 (746)
T ss_pred CCCC------cccccceeeccHHHhhCce---eeeeecCCCCcc-ccceeEEEEEEE
Confidence 9876 8999999999999999985 457887653211 124667776665
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.3e-08 Score=109.46 Aligned_cols=122 Identities=18% Similarity=0.200 Sum_probs=92.7
Q ss_pred ceEEEEEEEEeeCCCC---CCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCcc-ccEEEEEEeCCC-ceEEEE
Q 045512 366 IGILELGILSAKNLMP---MTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRW-NEQYTWEVYDPC-TVITIG 434 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~---~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~w-ne~~~f~v~~~~-~~l~i~ 434 (782)
...|+|+|+.+++|+. .+..+.... ||||+|.+-+ ..+||+++.++.||.| ||.|+|.+..|. ..|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3579999999998731 111122334 9999999843 3579999999999999 999999998763 589999
Q ss_pred EEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEEE
Q 045512 435 VFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTC 497 (782)
Q Consensus 435 V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
|+|+|..+ .|+++|+..||++.|..|- +.++|.+...... ...+|.+++.+..
T Consensus 510 V~D~d~~~------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~~ 562 (567)
T PLN02228 510 VQDYDNDT------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALDP 562 (567)
T ss_pred EEeCCCCC------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEcC
Confidence 99998755 7899999999999999885 5678876433221 2467888777644
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-08 Score=107.99 Aligned_cols=124 Identities=29% Similarity=0.454 Sum_probs=102.4
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCcEEEEEECCeeeeeccccCCCCCeec-cEEEEEec--cCCCCeEEEEEEeCCCC-C
Q 045512 40 HYLFVNVVKARNLPVMDVS-GSLDPYVEVKLGNYKGIAKHLEKNQNPVWN-QIFAFSKE--RLQSNLVEVTVKDKDIG-K 114 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~~~~~T~~i~~t~nP~wn-e~f~f~~~--~~~~~~L~v~V~d~d~~-~ 114 (782)
|.|.|+|+.|++||.+|+. ...|.||++++++..++|.+..+++||.|| +.|.|.++ +++...|.|.+.|+|.. .
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 6789999999999999864 567999999999999999999999999999 56889886 46788999999999999 9
Q ss_pred CceeEEEEEEccccCCCCC-----CCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 115 DDFVGRVTFDLFEVPHRVP-----PDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~-----~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
+|-||.+.|++..|..... ...++..-|+++.+.-.. . .|+|.+-+.+.
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg-i-rgeinvivkvd 136 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG-I-RGEINVIVKVD 136 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc-c-cceeEEEEEEe
Confidence 9999999999998865321 124566789999875422 2 39998877654
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.9e-09 Score=116.15 Aligned_cols=101 Identities=29% Similarity=0.453 Sum_probs=89.4
Q ss_pred eeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeccccCCCCCeeccEEEEEeccC--
Q 045512 28 KTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-------KGIAKHLEKNQNPVWNQIFAFSKERL-- 98 (782)
Q Consensus 28 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~i~~t~nP~wne~f~f~~~~~-- 98 (782)
.+++.|+.-.+ .|.|.|+.|+++.+-|.+|.+||||+|.+++. ..+|+|+.+|+||+|+|.|+|.+...
T Consensus 937 svr~~y~~n~q--~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c 1014 (1103)
T KOG1328|consen 937 SVRAYYNGNAQ--TLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPC 1014 (1103)
T ss_pred EEEEEeecccc--chhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCcccc
Confidence 46777777555 89999999999999999999999999999973 46999999999999999999998532
Q ss_pred --CCCeEEEEEEeCCCC-CCceeEEEEEEccccCC
Q 045512 99 --QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPH 130 (782)
Q Consensus 99 --~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~ 130 (782)
....|.|+|.|+|-. .+||-|++.+.|.++..
T Consensus 1015 ~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1015 STETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred ccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 357899999999999 99999999999998864
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.8e-08 Score=107.34 Aligned_cols=117 Identities=19% Similarity=0.328 Sum_probs=91.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeccccCCCCCeec-cEEEEEeccCCCCeEEEEEEeCCC
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGIAKHLEKNQNPVWN-QIFAFSKERLQSNLVEVTVKDKDI 112 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~i~~t~nP~wn-e~f~f~~~~~~~~~L~v~V~d~d~ 112 (782)
-.|.|+|+.|++|+... .|-+.|||+|.+-| ..++|.++.+++||+|| |.|.|.+..++-..|+|.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 47899999999999544 46677999999965 34566777899999999 999999999988999999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 113 G-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 113 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
+ ...|||++.+|+..+..+- +-.+|.+.-++...+..|.+.+.+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf--------RsVpLkN~ySEdlELaSLLv~i~m~ 1189 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF--------RSVPLKNGYSEDLELASLLVFIEMR 1189 (1267)
T ss_pred cCCcceeeeeecchhhhhccc--------eeeecccCchhhhhhhhheeeeEec
Confidence 9 5679999999999998753 2236655433333335666665443
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.6e-08 Score=112.23 Aligned_cols=119 Identities=28% Similarity=0.394 Sum_probs=98.7
Q ss_pred ccccccCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEE
Q 045512 19 ARLRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAF 93 (782)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f 93 (782)
.|+ +.|.++++++|. .+.|+|.|.-|++|+--..+..+||||+.++.+ .++||+++++|.||.|||...+
T Consensus 1508 p~~-iggqV~LsIsY~----~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY 1582 (1639)
T KOG0905|consen 1508 PGE-IGGQVKLSISYN----NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVY 1582 (1639)
T ss_pred ccc-cCceEEEEEEEc----CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheee
Confidence 344 245778888887 479999999999996554467899999999975 2789999999999999999988
Q ss_pred E---eccCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 045512 94 S---KERLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 94 ~---~~~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
. .+.++...|.+.||..+.. .+.++|.+.++|.++...+. ...||+|..
T Consensus 1583 ~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE-----~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1583 DGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKE-----SVGWYNLGA 1635 (1639)
T ss_pred cCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhh-----hcceeeccc
Confidence 6 4455568899999999998 99999999999999987653 458999964
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.8e-07 Score=104.25 Aligned_cols=119 Identities=23% Similarity=0.296 Sum_probs=91.6
Q ss_pred ceEEEEEEEEeeCCCCCCC---CCCCCCCcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCC-ceEEEEEEeCCC
Q 045512 366 IGILELGILSAKNLMPMTS---KDGKLTDAYCVAKYGNKW-IRTRTILDTLDPRWNEQYTWEVYDPC-TVITIGVFDNCH 440 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~---~~~~~~dpyv~v~~~~~~-~~T~~~~~t~nP~wne~~~f~v~~~~-~~l~i~V~d~~~ 440 (782)
-|.|.++|++|+-+...-. .-+.++||||.|.+++.+ .|| .+..||.|||.|.+++..+. ..++|+|.|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~-- 83 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK-- 83 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC--
Confidence 3889999999974332100 012334999999998865 588 55669999999999999876 6899999882
Q ss_pred CCCCCCCcCCCccEEEEEecccccCCcE-EEEEEEceeeCCCCCccccEEEEEEEEEECc
Q 045512 441 VNGSKDDAIDQRIGKVRIRLSTLETDRL-YTHYYPLLVLTPSGLKKNGELHLALRFTCTA 499 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~ 499 (782)
-.+||++.||+.+|..|.. +++|+++.+...+-. +..+|+++++|.+..
T Consensus 84 ---------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 84 ---------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN-PELKLRFMLWFRPAE 133 (758)
T ss_pred ---------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC-CCCEEEEEEEEEEhh
Confidence 4699999999999999866 899999998654332 225999999997754
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.5e-05 Score=81.42 Aligned_cols=243 Identities=16% Similarity=0.187 Sum_probs=157.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEec-------cCCCCeEEEEEEeCCCC-
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKE-------RLQSNLVEVTVKDKDIG- 113 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~-------~~~~~~L~v~V~d~d~~- 113 (782)
+.|+|++|+|.+... ...-.|..+++++...|..+..+..|.||..+.|.++ ..+...|++++|..|..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 679999999999763 3466899999999999999999999999999999864 34578899999999843
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC--CcccceEEEEEEEEcccCCccccccc--c-cccccccc--
Q 045512 114 -KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG--DKITQGEIMLAVWIGTQADESFSEAW--H-SDAHNISQ-- 185 (782)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~~~~~~~d~~~~~~~--~-~~~~~~~~-- 185 (782)
+.+.||.+.++|.........+....+.||+|...++ +... -+|.+.+.+.........+.. . ...+....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~K-PEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~ 157 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHK-PELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHV 157 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCC-ccEEEEEEEeccccccCCccccccccCCCcccCCC
Confidence 8899999999999882222222346789999988733 2223 688888877654332100000 0 00000000
Q ss_pred ----ccccc-------cc-------cccccCCceEEEEEEEEEeeCCCCCC----CC--CCCCcEEEEEECCeeeecccc
Q 045512 186 ----TNLAN-------TI-------SKVYFSPKLYYLRVFVFEAQDLVPSE----EG--RAPDAYVKIQLGNLVRVTRPS 241 (782)
Q Consensus 186 ----~~~~~-------~~-------~~~~~~p~~~~L~V~V~~a~~L~~~d----~~--g~~dpyv~v~lg~~~~kT~~~ 241 (782)
..... .. ......-....|.|++..|++|...- .. +....|....+-+....|..-
T Consensus 158 ~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F 237 (340)
T PF12416_consen 158 PPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPF 237 (340)
T ss_pred cccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeec
Confidence 00000 00 00011224668999999999987652 11 235666777776666666655
Q ss_pred cCCCCCCccc--ceeEEEecC---------CCCCeEEEEEEEccCCCCCceeEEEEEeCCCccc
Q 045512 242 HVRSVNPVWN--EEHMFVASE---------PFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQ 294 (782)
Q Consensus 242 ~~~t~nP~wn--e~f~f~v~~---------~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~ 294 (782)
.. ..+|.|. +.-.+.+.. .....|.|.++. .+..||.+.+++..+..
T Consensus 238 ~~-l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 238 KS-LSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPLLP 295 (340)
T ss_pred cc-cCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhccC
Confidence 54 6677653 222244321 123467777775 36789999999999874
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.3e-07 Score=101.53 Aligned_cols=98 Identities=18% Similarity=0.326 Sum_probs=80.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEee-ccccCCCCCccc-cEEEEEEeCC-CceEEEEEEe
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRT-RTILDTLDPRWN-EQYTWEVYDP-CTVITIGVFD 437 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T-~~~~~t~nP~wn-e~~~f~v~~~-~~~l~i~V~d 437 (782)
-.|.|.|+.|++|+. .++|- .|||.|++-| .+++| .++.+.+||+|| |.|+|.|.+| ..-|++.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 688999999999983 34555 7999999844 34444 456678999999 9999999998 4589999999
Q ss_pred CCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 438 NCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 438 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
+|.++ ...|||++..|+..+..|- +.+||.+
T Consensus 1141 eDmfs------~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1141 EDMFS------DPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred ccccC------Ccceeeeeecchhhhhccc---eeeeccc
Confidence 99987 5679999999999998874 5678865
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-07 Score=82.72 Aligned_cols=107 Identities=21% Similarity=0.326 Sum_probs=79.9
Q ss_pred EEEEEEEeeCCCCCCCC-----------CCCCCCcEEEEEE----CCEEEeeccccCCCCCccccEEEEEEe--------
Q 045512 369 LELGILSAKNLMPMTSK-----------DGKLTDAYCVAKY----GNKWIRTRTILDTLDPRWNEQYTWEVY-------- 425 (782)
Q Consensus 369 l~v~v~~a~~L~~~~~~-----------~~~~~dpyv~v~~----~~~~~~T~~~~~t~nP~wne~~~f~v~-------- 425 (782)
|.|.|++|.||+.+... ..-|.++||.+.+ +++..+|+++.++..|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46788999998753211 1224499999985 457799999999999999999999986
Q ss_pred CC--------CceEEEEEEeCCCCCCCC----CCcCCCccEEEEEecccccC-CcEEEEEEEc
Q 045512 426 DP--------CTVITIGVFDNCHVNGSK----DDAIDQRIGKVRIRLSTLET-DRLYTHYYPL 475 (782)
Q Consensus 426 ~~--------~~~l~i~V~d~~~~~~~~----~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L 475 (782)
+. ..++.++||+...-+.++ ...+|-.||.+.||+.+|.. ...++.|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 347999999987644222 13466789999999999854 3456889985
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.8e-06 Score=96.22 Aligned_cols=118 Identities=17% Similarity=0.288 Sum_probs=91.3
Q ss_pred cEEEEEEEEeecCCCC----C-CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC
Q 045512 40 HYLFVNVVKARNLPVM----D-VSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG 113 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~----d-~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~ 113 (782)
|.|.++|.+|+-+... + .....||||.|.+++. ..|| .+..||.|||.|...+...-...+.|.|+|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 6899999999843221 1 1122399999999985 5688 556699999999999877544679999999
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccC
Q 045512 114 KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQA 168 (782)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 168 (782)
+..+||.+.+++.++..+.. ....|+++.+.+|+......|+++++|....
T Consensus 83 ~~~~ig~~~~p~~~~~~g~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEAS----FINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred CCeEEEEEEEEHHHhhCCCc----ccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 46899999999999988632 2789999999888775424889999887543
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.28 E-value=9e-07 Score=101.96 Aligned_cols=104 Identities=21% Similarity=0.263 Sum_probs=84.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEECC-----EEEeeccccCCCCCccccEEEEE-Ee--CC-CceEEEEEE
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWE-VY--DP-CTVITIGVF 436 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~-v~--~~-~~~l~i~V~ 436 (782)
.|.|.|.|..|+||+-.- +|...||||+.++-. .+.||+++++|.||.|||..... .. .. ...|.+.||
T Consensus 1523 ~~~LtImV~H~K~L~~Lq--dg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQ--DGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVL 1600 (1639)
T ss_pred CceEEEEhhhhccccccc--CCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeee
Confidence 489999999999996432 444449999999954 35899999999999999988766 22 22 358999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
.++.+. .+.++|.+.|+|.++.-.+...+||+|..
T Consensus 1601 s~~~~~------en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1601 SNGGLL------ENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred ccccee------eeeeeeeeecchhhcchhhhhcceeeccc
Confidence 998876 78899999999999987776779999953
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0036 Score=66.41 Aligned_cols=236 Identities=14% Similarity=0.208 Sum_probs=156.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeecccccCCCCCCcccceeEEEec-------CCCCCeEEEEEEEcc-C
Q 045512 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVAS-------EPFEDLIIVTVEDRI-G 275 (782)
Q Consensus 204 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~-------~~~~~~L~i~V~d~d-~ 275 (782)
+.|.|+++++.+... .....|..++.++...|..+.. +..|.||..+.+.+. ......|++++|-.| .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 568999999998763 2467888999999999998886 999999999999763 233567999999888 5
Q ss_pred CCCCceeEEEEEeCCCc---ccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccccccCCC------
Q 045512 276 PGKDEILGREFIPVRNV---PQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDE------ 346 (782)
Q Consensus 276 ~~~d~~lG~~~i~l~~l---~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~~~~~------ 346 (782)
.+..+.+|.+.++|... .. .......+||.|-+... + -.+..-++.+.++++........
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~---~~~~~~~~W~~LL~~~~------~--y~~~KPEl~l~l~ie~~~~~~~~~~~~~~ 146 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQE---KNQKQKPKWYKLLSSSS------K--YKKHKPELLLSLSIEDDSKPQTPDFESFK 146 (340)
T ss_pred CCcceeccEEEEEccccccccc---cccccCCCeeEcccccc------c--cccCCccEEEEEEEeccccccCCcccccc
Confidence 67888999999999988 33 22346789999987631 1 11223456666666543221000
Q ss_pred ---CCCCCC-------CCCcccc-----------cc----ccCcceEEEEEEEEeeCCCCCCCC---CCCCC-CcEEEEE
Q 045512 347 ---STHFSS-------DLQPSSM-----------SL----RKGSIGILELGILSAKNLMPMTSK---DGKLT-DAYCVAK 397 (782)
Q Consensus 347 ---~~~~~~-------d~~~~~~-----------~~----~~~~~g~l~v~v~~a~~L~~~~~~---~~~~~-dpyv~v~ 397 (782)
.+.... ...+... +. .....-.|.|++-.|+||...... +..+. ..|....
T Consensus 147 ~~~~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~Ys 226 (340)
T PF12416_consen 147 AKPAPPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYS 226 (340)
T ss_pred ccCCCcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEE
Confidence 000111 0001000 00 012356788899999998765211 12233 6677777
Q ss_pred ECCEEEeeccccCCCCCcc--ccEEEEEEeC----------CCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccC
Q 045512 398 YGNKWIRTRTILDTLDPRW--NEQYTWEVYD----------PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLET 465 (782)
Q Consensus 398 ~~~~~~~T~~~~~t~nP~w--ne~~~f~v~~----------~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 465 (782)
+-|....|...+...+|.| ++...+.+.. ....|.|.++.. +..||.+.|++..+.+
T Consensus 227 llGn~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----------~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 227 LLGNDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----------NQSLGSTSVPLQPLLP 295 (340)
T ss_pred ecCcEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----------CcEEEEEEEEhhhccC
Confidence 8777888888888888877 3333366652 134688888773 5689999999999853
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.4e-05 Score=67.85 Aligned_cols=100 Identities=19% Similarity=0.304 Sum_probs=77.7
Q ss_pred EEEEEEEeecCCCCCC-------------CCCCCcEEEEEEC----CeeeeeccccCCCCCeeccEEEEEec--------
Q 045512 42 LFVNVVKARNLPVMDV-------------SGSLDPYVEVKLG----NYKGIAKHLEKNQNPVWNQIFAFSKE-------- 96 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~-------------~g~~dPyv~v~~~----~~~~~T~~i~~t~nP~wne~f~f~~~-------- 96 (782)
|.|.|++|.+|....+ .-.-|+||++.+. ++..+|+++.++--|+|+-.+.|.++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4688999999975421 1235899999964 46889999999999999999999754
Q ss_pred -------cCCCCeEEEEEEeCCCC-----------CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 045512 97 -------RLQSNLVEVTVKDKDIG-----------KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145 (782)
Q Consensus 97 -------~~~~~~L~v~V~d~d~~-----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (782)
.++...+.++||++... +|-.+|.+.||+.+|..+.. ....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rs----GitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRS----GITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhccc----CccccccC
Confidence 13457899999998642 56789999999999987653 36789875
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.62 E-value=6.5e-05 Score=61.15 Aligned_cols=88 Identities=14% Similarity=0.230 Sum_probs=65.6
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEE--C-CeeeeeccccCCCCCeeccEEEEEec--cCCCCeEEEEEEeCCCC-C
Q 045512 42 LFVNVVKARNLPVMDV-SGSLDPYVEVKL--G-NYKGIAKHLEKNQNPVWNQIFAFSKE--RLQSNLVEVTVKDKDIG-K 114 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~-~g~~dPyv~v~~--~-~~~~~T~~i~~t~nP~wne~f~f~~~--~~~~~~L~v~V~d~d~~-~ 114 (782)
+.|+|++|+||..... ...+.-|++=-+ . +..+||....+..||+|+|+|.|.+. .++.-.|.|.|+. .. +
T Consensus 1 iwitv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 1 IWITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred CEEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 3689999999976542 223333544333 2 24789999999999999999999865 4456678888888 44 8
Q ss_pred CceeEEEEEEccccCCC
Q 045512 115 DDFVGRVTFDLFEVPHR 131 (782)
Q Consensus 115 d~~lG~~~i~l~~l~~~ 131 (782)
.+.||.|++.+.++-..
T Consensus 79 Ke~iG~~sL~l~s~gee 95 (103)
T cd08684 79 KRTIGECSLSLRTLSTQ 95 (103)
T ss_pred cceeeEEEeecccCCHH
Confidence 89999999999988654
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.59 E-value=9.2e-05 Score=84.59 Aligned_cols=88 Identities=22% Similarity=0.326 Sum_probs=75.4
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcE-EEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CC
Q 045512 38 QMHYLFVNVVKARNLPVMDVSGSLDPY-VEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KD 115 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPy-v~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d 115 (782)
=.|...++|++|+ ++. .||| +.+++|.+.++|.+.++|.||+||+...|.+........+|.|||.+.+ ++
T Consensus 52 ~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n 124 (644)
T PLN02964 52 FSGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKN 124 (644)
T ss_pred ccCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHH
Confidence 4578999999997 332 4886 5667788999999999999999999999998877667789999999999 99
Q ss_pred ceeEEEEEEccccCCCC
Q 045512 116 DFVGRVTFDLFEVPHRV 132 (782)
Q Consensus 116 ~~lG~~~i~l~~l~~~~ 132 (782)
+++|.|++++.++..++
T Consensus 125 ~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 125 TLVGYCELDLFDFVTQE 141 (644)
T ss_pred HhhhheeecHhhccHHH
Confidence 99999999998887653
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00014 Score=83.10 Aligned_cols=89 Identities=22% Similarity=0.329 Sum_probs=73.3
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCCCcEEEE-EECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCC
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLTDAYCVA-KYGNKWIRTRTILDTLDPRWNEQYTWEVYDP-CTVITIGVFDNCHV 441 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v-~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~~ 441 (782)
.-.|.+.+++++|+ |+. +|+|+.+ .+|.+.+||.+.++|.||+||+...|.|... ....+|.|||++.+
T Consensus 51 ~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 51 DFSGIALLTLVGAE----MKF-----KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred cccCeEEEEeehhh----hcc-----CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 34689999999987 322 3888655 6688999999999999999999999998852 23479999999998
Q ss_pred CCCCCCcCCCccEEEEEecccccCCc
Q 045512 442 NGSKDDAIDQRIGKVRIRLSTLETDR 467 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~~~~ 467 (782)
+ +++++|.++++|.++...+
T Consensus 122 s------~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 122 S------KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred C------HHHhhhheeecHhhccHHH
Confidence 7 8999999999998886543
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00018 Score=58.66 Aligned_cols=95 Identities=15% Similarity=0.273 Sum_probs=68.9
Q ss_pred EEEEEEeeCCCCCCC-CCCCCcEEEEEEC--C-eeeecccccCCCCCCcccceeEEEecCCC--CCeEEEEEEEccCCCC
Q 045512 205 RVFVFEAQDLVPSEE-GRAPDAYVKIQLG--N-LVRVTRPSHVRSVNPVWNEEHMFVASEPF--EDLIIVTVEDRIGPGK 278 (782)
Q Consensus 205 ~V~V~~a~~L~~~d~-~g~~dpyv~v~lg--~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~d~d~~~~ 278 (782)
.++++.|+||.-... ...+..|++-.+. . ...||.... +..||.|+|+|.|.+.... .-.|.|+|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 578999999975443 3346667776554 2 356666666 4999999999999875433 4468888887 4678
Q ss_pred CceeEEEEEeCCCcccccCCCCCCCCeeEE
Q 045512 279 DEILGREFIPVRNVPQRHETTKLPDPRWFN 308 (782)
Q Consensus 279 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~ 308 (782)
...||.|.++++++-.+ ...+|.+
T Consensus 79 Ke~iG~~sL~l~s~gee------E~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLSTQ------ETDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCHH------Hhhhhhc
Confidence 88999999999988753 2556654
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00016 Score=75.31 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=91.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeccccCCCCCeeccEEEEEeccC-----------CCCeE
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLG-----NYKGIAKHLEKNQNPVWNQIFAFSKERL-----------QSNLV 103 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~i~~t~nP~wne~f~f~~~~~-----------~~~~L 103 (782)
..|.+.|+++.+++........|-||++.+- .++.+|.++++|.+|.|+|.|.+++... ....+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 3578889999988865433456889998873 2578999999999999999999998651 13569
Q ss_pred EEEEEeCCCC--CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 104 EVTVKDKDIG--KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 104 ~v~V~d~d~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
.|++|.+..+ +|.++|.|.+.|.-|...-. ....++|.+ |.+...|.|.+.+.+.
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~ce-----i~e~~~l~D--GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCE-----ICEYLPLKD--GRKAVGGKLEVKVRIR 503 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccc-----hhhceeccc--cccccCCeeEEEEEEe
Confidence 9999999888 99999999999998876432 345567765 4443348888888664
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00021 Score=74.45 Aligned_cols=119 Identities=23% Similarity=0.332 Sum_probs=92.6
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeC-C----------
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLDPRWNEQYTWEVYD-P---------- 427 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~~~f~v~~-~---------- 427 (782)
....|++.|.++.+++.. .+... |.|+++++- .++.+|.+++.|.+|.|+|.|.+.+.. +
T Consensus 365 ~d~elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~f 441 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRF 441 (523)
T ss_pred chhHhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHH
Confidence 345678888899888742 22223 999999872 356789999999999999999999975 2
Q ss_pred -CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCc-cccEEEEEEEE
Q 045512 428 -CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLK-KNGELHLALRF 495 (782)
Q Consensus 428 -~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~~ 495 (782)
...+.|++|+...+ ..+|.++|.+.|.|..|++.-.....|+|.+ |.+ -+|+|.+.+++
T Consensus 442 kr~g~kfeifhkggf-----~rSdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRi 502 (523)
T KOG3837|consen 442 KRLGKKFEIFHKGGF-----NRSDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRI 502 (523)
T ss_pred HhcCeeEEEeecccc-----ccccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEE
Confidence 12589999998766 3489999999999999998877788899976 322 26888888876
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00048 Score=71.39 Aligned_cols=108 Identities=22% Similarity=0.294 Sum_probs=85.8
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-C----EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEe
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG-N----KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFD 437 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-~----~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d 437 (782)
...|.+.|.|++|++|....- .+.. +|||+|++- + .+.+|+...+|++|-+.++..|.-.-+...|.+.||-
T Consensus 266 d~~g~l~vEii~ar~l~~k~~--~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPG--SKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEecccccccCC--cccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence 457899999999999986432 1223 999999983 2 3578999999999999988888877778899999995
Q ss_pred C-CCCCCCCCCcCCCccEEEEEecccccCCc-EEEEEEEceeeC
Q 045512 438 N-CHVNGSKDDAIDQRIGKVRIRLSTLETDR-LYTHYYPLLVLT 479 (782)
Q Consensus 438 ~-~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~ 479 (782)
. ..+ ..+.|+|.++|-+.+|.-.. ....||+|....
T Consensus 344 dygRm------d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 344 DYGRM------DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred ccccc------chHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 3 333 37889999999999997655 778999997643
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.00097 Score=69.20 Aligned_cols=112 Identities=24% Similarity=0.312 Sum_probs=89.4
Q ss_pred cccccccEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEE
Q 045512 34 DLVEQMHYLFVNVVKARNLPVMDV-SGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTV 107 (782)
Q Consensus 34 ~~~~~~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V 107 (782)
.+....|.+.|.|++|++|..+.. ...++|||+|++-+ .+.+|+...+|..|-+-+...|.-.. +...|.+.|
T Consensus 263 ~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp-~~k~Lq~tv 341 (405)
T KOG2060|consen 263 ALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP-PGKYLQGTV 341 (405)
T ss_pred hhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC-CccEEEEEE
Confidence 355678899999999999987643 23789999999964 26789999999999999988887555 468999999
Q ss_pred EeC-CCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 108 KDK-DIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 108 ~d~-d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
|.. ... .+.|+|.+.+-+.+|.... ...-.||+|-....
T Consensus 342 ~gdygRmd~k~fmg~aqi~l~eL~ls~----~~~igwyKlfgsss 382 (405)
T KOG2060|consen 342 WGDYGRMDHKSFMGVAQIMLDELNLSS----SPVIGWYKLFGSSS 382 (405)
T ss_pred eccccccchHHHhhHHHHHhhhhcccc----ccceeeeeccCCcc
Confidence 865 445 8899999999999998753 13568999976543
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.013 Score=67.08 Aligned_cols=110 Identities=18% Similarity=0.258 Sum_probs=82.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeccccCC-CCCeeccE-EEEE-eccCCCCeEEEEEEe
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-------YKGIAKHLEKN-QNPVWNQI-FAFS-KERLQSNLVEVTVKD 109 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~i~~t-~nP~wne~-f~f~-~~~~~~~~L~v~V~d 109 (782)
+.+.|+|++|.-|..++. ..||.|.+=| ..++|+++.++ .||+|+|. |.|. +-.+.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 578999999999987653 4899999844 46789988855 49999965 8886 334456789999999
Q ss_pred CCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 110 KDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 110 ~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
.. ..+||+--+++..|..+- +...|....+.......|.+.+-+
T Consensus 779 Eg---gK~ig~RIlpvd~l~~GY--------rhv~LRse~Nqpl~lp~Lfv~i~~ 822 (1189)
T KOG1265|consen 779 EG---GKFIGQRILPVDGLNAGY--------RHVCLRSESNQPLTLPALFVYIVL 822 (1189)
T ss_pred cC---CceeeeeccchhcccCcc--------eeEEecCCCCCccccceeEEEEEe
Confidence 84 579999999999998753 345777766665444556555543
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.078 Score=49.43 Aligned_cols=125 Identities=16% Similarity=0.134 Sum_probs=84.4
Q ss_pred cccEEEEEEEEeecCCCCCC--CCCCC--cEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCC-------------C
Q 045512 38 QMHYLFVNVVKARNLPVMDV--SGSLD--PYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQ-------------S 100 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~--~g~~d--Pyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~-------------~ 100 (782)
...+|.|+|..++.....-. .+..+ -.+-+.+++|+++|+.+..+.+|.|+|.|-|.++... .
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 34589999999987653321 13333 3456666899999999999999999999999875321 3
Q ss_pred CeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-cccceEEEEEEEEc
Q 045512 101 NLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD-KITQGEIMLAVWIG 165 (782)
Q Consensus 101 ~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~~ 165 (782)
..|++.|.--|.. ...++|+..++...+....... ...-..|.+..+. +...|-|.+++.+.
T Consensus 87 ~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~---~~~~vEL~G~~~e~kv~~GiL~l~lELl 150 (156)
T PF15627_consen 87 DPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGS---TSFTVELCGVGPESKVPVGILDLRLELL 150 (156)
T ss_pred CceEEEEEEecCCCceEeeeeceehHHHHhccCCCc---cceeEEEeccCCCCccceeEEEEEEEee
Confidence 5788888887776 6689999999988877654310 1112234333322 12238888887554
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.084 Score=49.93 Aligned_cols=101 Identities=18% Similarity=0.275 Sum_probs=70.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEec--c-CCCCeEEEEEEeCC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGIAKHLEKNQNPVWNQIFAFSKE--R-LQSNLVEVTVKDKD 111 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~i~~t~nP~wne~f~f~~~--~-~~~~~L~v~V~d~d 111 (782)
.++|+|++|.++...+ .+|-||.+.+ |++ ...|+.+.. .++.|||.+.|++. + +.+..|.|.||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 5889999999998643 4688888855 554 235655554 68999999999863 3 34688999999976
Q ss_pred CC-----CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc
Q 045512 112 IG-----KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT 166 (782)
Q Consensus 112 ~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (782)
.. ....+|.+.++|-+... .| . .|...+.+|...
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~~~-------------~L-------r-~G~~~L~lW~~~ 123 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDYTD-------------TL-------V-SGKMALNLWPVP 123 (158)
T ss_pred cccCCCCceEEEEEEEEEEECCCC-------------hh-------h-CCCEEEEEEcCC
Confidence 42 22468888887766321 11 1 388888988753
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.092 Score=50.64 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=52.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEec--c-CCCCeEEEEEEeCC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGIAKHLEKNQNPVWNQIFAFSKE--R-LQSNLVEVTVKDKD 111 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~i~~t~nP~wne~f~f~~~--~-~~~~~L~v~V~d~d 111 (782)
.++|+|+.+.++... ....+-||++.+ |++ ...|+.+..+.++.|||.+.|++. + +.+..|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 589999999999872 244667777644 664 346776666678999999999753 3 34688999999975
Q ss_pred C
Q 045512 112 I 112 (782)
Q Consensus 112 ~ 112 (782)
.
T Consensus 87 ~ 87 (173)
T cd08693 87 K 87 (173)
T ss_pred c
Confidence 4
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.18 Score=47.66 Aligned_cols=88 Identities=19% Similarity=0.314 Sum_probs=60.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEE--CCEEE----eeccccCCCCCccccEEEEEEe--C-C-CceEEEEEE
Q 045512 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAKY--GNKWI----RTRTILDTLDPRWNEQYTWEVY--D-P-CTVITIGVF 436 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~--~~~~~----~T~~~~~t~nP~wne~~~f~v~--~-~-~~~l~i~V~ 436 (782)
..++|+|++++++...+ ..|-||.+.+ |++.. .|+.+. ..++.|||-.+|++. + | ...|.|+||
T Consensus 8 ~~~~v~i~~~~~~~~~~-----~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~ 81 (158)
T cd08398 8 SNLRIKILCATYVNVND-----IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSIC 81 (158)
T ss_pred CCeEEEEEeeccCCCCC-----cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEE
Confidence 36889999999986321 2388888855 66543 454444 368999999999876 3 2 668999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEeccc
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLST 462 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~ 462 (782)
+...-. +++.....||.+.++|-+
T Consensus 82 ~~~~~~--~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 82 SVKGRK--GAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEeccc--CCCCceEEEEEEEEEEEC
Confidence 975311 011133579999999987
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.074 Score=49.62 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=29.9
Q ss_pred HHHHHhhhccccCCchhhHHHHHHHHHHHHcCchhHHHHH
Q 045512 582 AICRWFNDICTWRNPVETVLLHVLFLILVFYPELILPTIF 621 (782)
Q Consensus 582 ~~~~~~~~~~~W~~p~~s~~~~~~~~~~~~~~~l~~p~~~ 621 (782)
..+..++.+++|++|..|.++.+++++++.- -+++|+=.
T Consensus 80 t~gERl~allsWrdP~aT~lf~~~clv~avv-ly~vP~r~ 118 (156)
T PF08372_consen 80 TQGERLQALLSWRDPRATALFVVFCLVAAVV-LYFVPFRV 118 (156)
T ss_pred HHHHHHHHhhccCCccHHHHHHHHHHHHHHH-HHHhhHHH
Confidence 6789999999999999999988887776543 23456543
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.25 Score=46.07 Aligned_cols=96 Identities=18% Similarity=0.262 Sum_probs=70.4
Q ss_pred CceEEEEEEEEEeeCCCCCCCC--CCCC--cEEEEEECCeeeecccccCCCCCCcccceeEEEecCCC------------
Q 045512 199 PKLYYLRVFVFEAQDLVPSEEG--RAPD--AYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPF------------ 262 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~~d~~--g~~d--pyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~------------ 262 (782)
|...+|.+.|..++-....... +..+ -.+-+.+++|.++|+.+.. +.+|.|+|.|.|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhhc
Confidence 4556899999998764322110 2333 3455566799999999987 999999999999986442
Q ss_pred -CCeEEEEEEEccCCCCCceeEEEEEeCCCcccc
Q 045512 263 -EDLIIVTVEDRIGPGKDEILGREFIPVRNVPQR 295 (782)
Q Consensus 263 -~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~ 295 (782)
.+.+.+.|.-.|..+...++|+..++...+...
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s 118 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS 118 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhcc
Confidence 246778887777666668999999998887753
|
|
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.19 Score=47.68 Aligned_cols=94 Identities=21% Similarity=0.276 Sum_probs=68.5
Q ss_pred CCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEec--c-CCCCeEEEEEEeCCCC-CCceeEEEEEEccc
Q 045512 58 SGSLDPYVEVKL--GNY----KGIAKHLEKNQNPVWNQIFAFSKE--R-LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFE 127 (782)
Q Consensus 58 ~g~~dPyv~v~~--~~~----~~~T~~i~~t~nP~wne~f~f~~~--~-~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~ 127 (782)
...+|-||.+.+ +++ ..+|+.+.-+..+.|||...|++. + +.+..|.|.|||.+.. +...+|.+.++|-+
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 345788888865 554 346777776778999999999864 3 3468899999998766 67789999988776
Q ss_pred cCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccCCccc
Q 045512 128 VPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESF 172 (782)
Q Consensus 128 l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~ 172 (782)
-.. .|. .|...+.+|....+|...
T Consensus 107 ~~g-------------~Lr--------~G~~~l~lw~~~~~d~~~ 130 (159)
T cd08397 107 KDG-------------TLR--------RGRQKLRVWPDVEADGSI 130 (159)
T ss_pred CCC-------------cEe--------cCCEEEEEEeCCCCCCcc
Confidence 421 121 288899999887776544
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.24 Score=47.00 Aligned_cols=107 Identities=25% Similarity=0.399 Sum_probs=72.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEec--c-CCCCeEEEEEEeCC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGIAKHLEKNQNPVWNQIFAFSKE--R-LQSNLVEVTVKDKD 111 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~i~~t~nP~wne~f~f~~~--~-~~~~~L~v~V~d~d 111 (782)
.++|++....++...+ ....+-||.+.+ |++ ...|.......++.|||.+.|++. + +.+..|.|.||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5788888888887622 234566777754 554 234444444478999999999853 3 34678999999986
Q ss_pred CC---CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccCC
Q 045512 112 IG---KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQAD 169 (782)
Q Consensus 112 ~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d 169 (782)
.. ++..||.+.++|-+... .| . .|...+.+|.....+
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~~-------------~L-------~-~G~~~l~lW~~~~~~ 127 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYKG-------------KL-------R-QGMITLNLWPGKKTD 127 (156)
T ss_pred cCCCCcceEEEEEeEEeEcccC-------------cE-------e-cCCEEEeccCCcccC
Confidence 54 35789999888776422 12 1 288888888665444
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.0082 Score=57.92 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=18.4
Q ss_pred HHHHhhHHHHHhhhhcccCchhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhccCCCCCCC
Q 045512 701 VGDLASQCERVQAILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSK 762 (782)
Q Consensus 701 ~~~~a~~~e~~~~l~~w~~p~~s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~lr~P~~~~~ 762 (782)
...++..+..++.++.|+||..|..++++|.+++.+..+++...++.+..+..+-=|.+-..
T Consensus 90 ~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~ 151 (169)
T PF02453_consen 90 AEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEK 151 (169)
T ss_dssp CCCCCHHHHHHHCCCHCT-TTGGG--------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHH
Confidence 33455567888999999999999999999999999999888887777655554455555443
|
Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A. |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.19 Score=48.44 Aligned_cols=91 Identities=19% Similarity=0.301 Sum_probs=62.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE--CCEE----EeeccccCCCCCccccEEEEEEe--C-C-CceEEEEE
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKY--GNKW----IRTRTILDTLDPRWNEQYTWEVY--D-P-CTVITIGV 435 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~--~~~~----~~T~~~~~t~nP~wne~~~f~v~--~-~-~~~l~i~V 435 (782)
..++|+|+.+.+|... ... +-||.+.+ |++. ..|+.+.-+.++.|||.++|++. + | ...|.|.|
T Consensus 8 ~~f~i~i~~~~~~~~~-----~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti 82 (173)
T cd08693 8 EKFSITLHKISNLNAA-----ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAI 82 (173)
T ss_pred CCEEEEEEEeccCccC-----CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEE
Confidence 3688999999999741 123 77877644 6664 35655554578999999999876 3 3 66899999
Q ss_pred EeCCCCCCC----------CCCcCCCccEEEEEeccc
Q 045512 436 FDNCHVNGS----------KDDAIDQRIGKVRIRLST 462 (782)
Q Consensus 436 ~d~~~~~~~----------~~~~~d~~lG~~~i~l~~ 462 (782)
|+......+ +..+.+..||.+.++|-+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred EEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 997542210 012235689999888876
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.7 Score=43.02 Aligned_cols=117 Identities=20% Similarity=0.300 Sum_probs=78.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee---eeecccc-CCCCCeeccEEEEEec--------cCCCCeEEEEE
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYK---GIAKHLE-KNQNPVWNQIFAFSKE--------RLQSNLVEVTV 107 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~---~~T~~i~-~t~nP~wne~f~f~~~--------~~~~~~L~v~V 107 (782)
..+.|+|++..+++. ....-||+..-++.. .+|.... .+..-.|||.|.+.+. ..+...+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 467899999999986 334556777666653 4555444 3446899999998752 13456799999
Q ss_pred EeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc
Q 045512 108 KDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT 166 (782)
Q Consensus 108 ~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (782)
+..... +...+|.+.|+|+++..... .....-++|..... .. ..|.+++.+..
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~---~~~~~~~~l~~~~~--~~-a~L~isi~~~~ 136 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDE---EPITVRLLLKKCKK--SN-ATLSISISLSE 136 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCC---CcEEEEEeCccCCC--CC-cEEEEEEEEEE
Confidence 998543 33699999999999987531 11334566665522 22 67777776553
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.17 Score=58.30 Aligned_cols=85 Identities=25% Similarity=0.312 Sum_probs=67.8
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------eeeecccccCCCCCCcccce-eEEE-ecCCCCCeEEEEEEE
Q 045512 202 YYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-------LVRVTRPSHVRSVNPVWNEE-HMFV-ASEPFEDLIIVTVED 272 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-------~~~kT~~~~~~t~nP~wne~-f~f~-v~~~~~~~L~i~V~d 272 (782)
+.+.|+|++++=|..++. ..||.|.+-+ ..++|+++..++.||+|+|. |.|. +--+.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 468999999998876554 5799999864 56889998888999999975 7774 333445679999998
Q ss_pred ccCCCCCceeEEEEEeCCCccc
Q 045512 273 RIGPGKDEILGREFIPVRNVPQ 294 (782)
Q Consensus 273 ~d~~~~d~~lG~~~i~l~~l~~ 294 (782)
.. ..+||+-.+++..|..
T Consensus 779 Eg----gK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 779 EG----GKFIGQRILPVDGLNA 796 (1189)
T ss_pred cC----CceeeeeccchhcccC
Confidence 63 5699999999988874
|
|
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.13 Score=52.29 Aligned_cols=114 Identities=19% Similarity=0.221 Sum_probs=75.8
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC--CcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCC
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT--DAYCVAKYGN-KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCH 440 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~--dpyv~v~~~~-~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~ 440 (782)
...|.|.+++++++||.-... .+|. +-||++++.. .+.||.+......-.|.|.|+.++... .++.+-||.|+.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~--~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQ--QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChh--ccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCc
Confidence 345999999999999985432 2233 9999999975 456777776777778999999998863 689999999986
Q ss_pred CCCCCCCcCCCc--cEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 441 VNGSKDDAIDQR--IGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 441 ~~~~~~~~~d~~--lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.. .+++ +| -|.+..+.. +.-.+.+.|.. ...|++.+++.+
T Consensus 125 q~------RHKLC~~g--~l~~~~v~r-qspd~~~Al~l------ePrgq~~~r~~~ 166 (442)
T KOG1452|consen 125 QR------RHKLCHLG--LLEAFVVDR-QSPDRVVALYL------EPRGQPPLRLPL 166 (442)
T ss_pred hh------hccccccc--hhhhhhhhh-cCCcceeeeec------ccCCCCceeccc
Confidence 43 3333 44 233332221 11133444432 234888888765
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.96 Score=42.08 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=68.1
Q ss_pred eEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee---eecccccCCCCCCcccceeEEEecC--------CCCCeEEEE
Q 045512 201 LYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLV---RVTRPSHVRSVNPVWNEEHMFVASE--------PFEDLIIVT 269 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~---~kT~~~~~~t~nP~wne~f~f~v~~--------~~~~~L~i~ 269 (782)
...+.+.|++..+++. .....||+..-++.. ..|......+..-.|++.|.+.+.- .....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3468899999999877 224556666666543 4555544336667999999887631 123358888
Q ss_pred EEEccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 270 VEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 270 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
|+.....++...+|.+.++|+++... .......-++|...
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~---~~~~~~~~~~l~~~ 121 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANE---DEEPITVRLLLKKC 121 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCc---CCCcEEEEEeCccC
Confidence 88774333337999999999998853 11223344566554
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.3 Score=46.31 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=50.5
Q ss_pred CcEEEEEE--CCEE----EeeccccCCCCCccccEEEEEEe--C-C-CceEEEEEEeCCCCCCCCCCcCCCccEEEEEec
Q 045512 391 DAYCVAKY--GNKW----IRTRTILDTLDPRWNEQYTWEVY--D-P-CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRL 460 (782)
Q Consensus 391 dpyv~v~~--~~~~----~~T~~~~~t~nP~wne~~~f~v~--~-~-~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l 460 (782)
|-||.+.+ +++. ..|+.+.-+..+.|||-.+|+|. + | ...|.|+|||.+.-+ ....||.+.++|
T Consensus 31 ~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~------~~~~vg~~~~~l 104 (159)
T cd08397 31 DLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG------KAVPFGGTTLSL 104 (159)
T ss_pred CEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC------CceEEEEEEEee
Confidence 77877755 5554 36666665678899999999986 3 3 668999999986422 567899999999
Q ss_pred ccc
Q 045512 461 STL 463 (782)
Q Consensus 461 ~~l 463 (782)
-+-
T Consensus 105 Fd~ 107 (159)
T cd08397 105 FNK 107 (159)
T ss_pred ECC
Confidence 874
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.94 Score=43.66 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=56.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE--CCEE---EeeccccCCCCCccccEEEEEEe--C-C-CceEEEEEEe
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKY--GNKW---IRTRTILDTLDPRWNEQYTWEVY--D-P-CTVITIGVFD 437 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~--~~~~---~~T~~~~~t~nP~wne~~~f~v~--~-~-~~~l~i~V~d 437 (782)
.++|+|+.+..+. .+ .... .-||.+.+ |++. .+|..+.-+.++.|||-++|++. | | ...|.|+||+
T Consensus 11 ~friki~~~~~~~-~~---~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 11 KFRVKILGIDIPV-LP---RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CEEEEEEeecccC-cC---CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence 5777887776432 21 1112 35555533 5543 36666666778999999999876 3 2 6689999999
Q ss_pred CCCCCC----------CCCCcCCCccEEEEEeccc
Q 045512 438 NCHVNG----------SKDDAIDQRIGKVRIRLST 462 (782)
Q Consensus 438 ~~~~~~----------~~~~~~d~~lG~~~i~l~~ 462 (782)
...-.. ...+..+..||.+.+.|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred EecCcccccccccccccccccccceEEEEEEEEEc
Confidence 742110 0112246778888888876
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.5 Score=42.30 Aligned_cols=76 Identities=13% Similarity=0.213 Sum_probs=49.8
Q ss_pred ecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe---eeeeccccCCCCCeeccEEEEEec--c-CCCCeEE
Q 045512 33 YDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL--GNY---KGIAKHLEKNQNPVWNQIFAFSKE--R-LQSNLVE 104 (782)
Q Consensus 33 ~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~---~~~T~~i~~t~nP~wne~f~f~~~--~-~~~~~L~ 104 (782)
+++.. .++|+|.++.++.. +......-||++.+ |++ ..+|.....+.++.|||.+.|++. + +....|.
T Consensus 6 wdi~~---~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc 81 (178)
T cd08399 6 WDCDR---KFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLN 81 (178)
T ss_pred EecCC---CEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEE
Confidence 44543 47888888874432 22333345666533 554 236777777778999999999863 3 3468899
Q ss_pred EEEEeCCC
Q 045512 105 VTVKDKDI 112 (782)
Q Consensus 105 v~V~d~d~ 112 (782)
|.||+...
T Consensus 82 ~ti~~~~~ 89 (178)
T cd08399 82 LQIYCGKA 89 (178)
T ss_pred EEEEEEec
Confidence 99999743
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.99 E-value=1 Score=43.46 Aligned_cols=105 Identities=22% Similarity=0.316 Sum_probs=70.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeecccc----CCCCCeeccEEEEEec---cCCCCeEEEEE
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKL--GNYK----GIAKHLE----KNQNPVWNQIFAFSKE---RLQSNLVEVTV 107 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~i~----~t~nP~wne~f~f~~~---~~~~~~L~v~V 107 (782)
.+.|+|..+.+++........|-||.+.+ |++. ..|+... -...+.|||.+.|++. -+.+..|.|.+
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 68899999999998765456788888855 6542 3454322 1236789999999863 23467899999
Q ss_pred EeCCCC----------CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc
Q 045512 108 KDKDIG----------KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT 166 (782)
Q Consensus 108 ~d~d~~----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (782)
|+.... ++..||.+.++|-+.. |.-. .|...+.+|...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~--------------------~~L~-~G~~~L~lW~~~ 136 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR--------------------GVLR-QGSLLLGLWPPS 136 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcch--------------------hhhc-cCCEEEEeccCC
Confidence 997654 2357777777665532 2111 388888888654
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.6 Score=36.53 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=49.6
Q ss_pred CCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCceeEEEEEEcccc
Q 045512 61 LDPYVEVKLGN-YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEV 128 (782)
Q Consensus 61 ~dPyv~v~~~~-~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~lG~~~i~l~~l 128 (782)
++-.+.+++++ ...+|.... ..+..|++.|.+.++. +..|+|.||=+|. ..+-|-..+-|++.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhh
Confidence 57789999998 477887665 3689999999999887 5789999988764 34667777777774
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.73 E-value=1.2 Score=42.26 Aligned_cols=87 Identities=24% Similarity=0.339 Sum_probs=58.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCee----eecccccCCCCCCcccceeEEEec---CCCCCeEEEEEEEcc
Q 045512 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLV----RVTRPSHVRSVNPVWNEEHMFVAS---EPFEDLIIVTVEDRI 274 (782)
Q Consensus 204 L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g~~~----~kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~d 274 (782)
++|.+....++... .....+-||++.+ |++. ..|..... ..++.|||...|++. -+.+..|.|+||+.+
T Consensus 10 ~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 10 LRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred eEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 67888888777541 1223566777644 4442 23333321 368999999999753 244678999999987
Q ss_pred CCC--CCceeEEEEEeCCCc
Q 045512 275 GPG--KDEILGREFIPVRNV 292 (782)
Q Consensus 275 ~~~--~d~~lG~~~i~l~~l 292 (782)
..+ .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 544 568999999998764
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.04 E-value=1.1 Score=43.13 Aligned_cols=90 Identities=23% Similarity=0.271 Sum_probs=62.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeee----ecccc---cCCCCCCcccceeEEEec---CCCCCeEEEEE
Q 045512 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLVR----VTRPS---HVRSVNPVWNEEHMFVAS---EPFEDLIIVTV 270 (782)
Q Consensus 203 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g~~~~----kT~~~---~~~t~nP~wne~f~f~v~---~~~~~~L~i~V 270 (782)
.+.|+|.++.+++........|-||.+.+ |++.. .|+.. +.-...+.|||...|.+. -+.+..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 47899999999987665556788888855 55433 33321 111235779999998764 24467899999
Q ss_pred EEccCCC---------CCceeEEEEEeCCCc
Q 045512 271 EDRIGPG---------KDEILGREFIPVRNV 292 (782)
Q Consensus 271 ~d~d~~~---------~d~~lG~~~i~l~~l 292 (782)
|+....+ .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9876543 457899999998664
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=90.83 E-value=2.3 Score=39.54 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=51.4
Q ss_pred eeccccCC-CCCeeccEEEEEec--c-CCCCeEEEEEEeCCCC-CC----ceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 045512 75 IAKHLEKN-QNPVWNQIFAFSKE--R-LQSNLVEVTVKDKDIG-KD----DFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145 (782)
Q Consensus 75 ~T~~i~~t-~nP~wne~f~f~~~--~-~~~~~L~v~V~d~d~~-~d----~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (782)
.|+...-+ .++.|||.+.|++. + +....|.|.||+.+.. .+ ..||.+.++|-+... .|
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~-------------~L 89 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRG-------------QL 89 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTS-------------BB
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCC-------------cc
Confidence 66666666 79999999999863 3 4568899999998876 43 689999988776522 12
Q ss_pred ecCCCCcccceEEEEEEEEcccCCc
Q 045512 146 EDRKGDKITQGEIMLAVWIGTQADE 170 (782)
Q Consensus 146 ~~~~~~~~~~G~l~l~~~~~~~~d~ 170 (782)
. .|...+.+|-....+.
T Consensus 90 -------~-~G~~~L~lW~~~~~~~ 106 (142)
T PF00792_consen 90 -------R-QGPQKLSLWPDEEPDP 106 (142)
T ss_dssp -------E-EEEEEEE-EET-TTSS
T ss_pred -------c-CCCEEEEEEcCCCCcc
Confidence 1 3999999988755443
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.73 Score=47.05 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=61.7
Q ss_pred ccccccEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCC
Q 045512 35 LVEQMHYLFVNVVKARNLPVMD--VSGSLDPYVEVKLGNY-KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKD 111 (782)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~~~-~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d 111 (782)
++...|.|.++++.+++|.... .+-+-+-||++....+ +.+|.+.....-=.|.|+|..++.. ...+.+-||.++
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~ 123 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWP 123 (442)
T ss_pred eecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEeecC
Confidence 4446789999999999997543 3557789999999875 7788888777778999999998766 467889998886
Q ss_pred CC
Q 045512 112 IG 113 (782)
Q Consensus 112 ~~ 113 (782)
.-
T Consensus 124 pq 125 (442)
T KOG1452|consen 124 PQ 125 (442)
T ss_pred ch
Confidence 54
|
|
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=88.35 E-value=3 Score=38.74 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=39.2
Q ss_pred eeccccCC-CCCccccEEEEEEe--C-C-CceEEEEEEeCCCCCCCCCCcCC----CccEEEEEecccc
Q 045512 404 RTRTILDT-LDPRWNEQYTWEVY--D-P-CTVITIGVFDNCHVNGSKDDAID----QRIGKVRIRLSTL 463 (782)
Q Consensus 404 ~T~~~~~t-~nP~wne~~~f~v~--~-~-~~~l~i~V~d~~~~~~~~~~~~d----~~lG~~~i~l~~l 463 (782)
.|..+.-+ .++.|||.++|++. + | ...|.|+||+.+... .. ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~------~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK------KSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST------TT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC------ccccceeEEEEEEEEeECC
Confidence 56555555 79999999999976 3 3 668999999876532 22 6899999999875
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.23 E-value=0.2 Score=58.53 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=81.3
Q ss_pred CcEEEEEECCE-EEeeccccCC-CCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcE
Q 045512 391 DAYCVAKYGNK-WIRTRTILDT-LDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRL 468 (782)
Q Consensus 391 dpyv~v~~~~~-~~~T~~~~~t-~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~ 468 (782)
++|+.+.+... ..+|..+++. .+|.|.+.|+..+......+++.|-+.+..| .-..+|.+.++...+..+..
T Consensus 139 e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G------~s~~w~~v~~s~~~~~~~~~ 212 (887)
T KOG1329|consen 139 ENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG------WSKRWGRVKISFLQYCSGHR 212 (887)
T ss_pred cchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc------ceeEEEEeccchhhhhcccc
Confidence 89999999764 4688888877 7999999998888888889999998888764 57899999999999999888
Q ss_pred EEEEEEceeeCCCCCccccEEEEEEEEEEC
Q 045512 469 YTHYYPLLVLTPSGLKKNGELHLALRFTCT 498 (782)
Q Consensus 469 ~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 498 (782)
...|+++.....+..++.-.+.+.+.|.+.
T Consensus 213 ~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 213 IGGWFPILDNDGKPHQKGSNESLRLGFTPM 242 (887)
T ss_pred ccceeeeeccCCccccCCcccceEEeeEee
Confidence 899999987655433333355666666554
|
|
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=88.14 E-value=2.8 Score=36.38 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=49.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEec--c-CCCCeEEEEEEeCCC
Q 045512 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGIAKHLEKNQNPVWNQIFAFSKE--R-LQSNLVEVTVKDKDI 112 (782)
Q Consensus 42 L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~i~~t~nP~wne~f~f~~~--~-~~~~~L~v~V~d~d~ 112 (782)
+.+.+..+.+.........++-||.+.+ |++ ...|+.+.....+.|||...|++. + +....|.|.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 5677888888776543333578888855 554 335666665667999999999753 2 346789999998643
|
Outlier of C2 family. |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=86.95 E-value=6.7 Score=32.95 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=56.9
Q ss_pred CcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEE
Q 045512 391 DAYCVAKYGNK-WIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLY 469 (782)
Q Consensus 391 dpyv~v~~~~~-~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~ 469 (782)
+..|++++.|. ..+|.-.. ..+..|++.|++.+.. +..|+|.||=.|. -.+=|-..+.|.+...
T Consensus 10 eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---------RslCav~~lrLEd~~~---- 74 (98)
T cd08687 10 EVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---------RSLCAVKFLKLEDERH---- 74 (98)
T ss_pred ceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc---------hhhhhheeeEhhhhcc----
Confidence 77899999885 45666543 3578899999999875 5789999997763 2355666777777322
Q ss_pred EEEEEceeeCCCCCccccEEEEEEEE
Q 045512 470 THYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 470 ~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
....+|. .+|.+..++.|
T Consensus 75 ~~~~~le--------pqg~l~~ev~f 92 (98)
T cd08687 75 EVQLDME--------PQLCLVAELTF 92 (98)
T ss_pred cceeccc--------cccEEEEEEEe
Confidence 2233443 35888887776
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=85.05 E-value=2.7 Score=48.07 Aligned_cols=64 Identities=23% Similarity=0.391 Sum_probs=46.3
Q ss_pred HHhhHHHHHhhhhcccCchhHHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhccCCCCCCC-CCCcchh
Q 045512 703 DLASQCERVQAILCWRDLRATFIFLIFSFIWAVFSYVTPFQVVAVLIGLYMLRHPRFRSK-MPSVPVN 769 (782)
Q Consensus 703 ~~a~~~e~~~~l~~w~~p~~s~~~~~~l~~~~~~~~~vP~r~i~l~~g~~~lr~P~~~~~-~~~~~~~ 769 (782)
.++.+.-.|.-|-+|++|+.|..|+++-+++.++=+++|.-+++|+ ..+.+|..|.- +|+.+..
T Consensus 107 ~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~---~li~~P~~r~~lFPpap~a 171 (642)
T PF11696_consen 107 GLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLI---ALILSPPARSILFPPAPPA 171 (642)
T ss_pred HHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCcccccccCCCCCcc
Confidence 3445556677788999999999999988888888888898555544 33456777764 4665543
|
|
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=84.18 E-value=9.5 Score=37.21 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=33.3
Q ss_pred eeeeccccCCCCCeeccEEEEEec--cCCCCeEEEEEEeCCCC
Q 045512 73 KGIAKHLEKNQNPVWNQIFAFSKE--RLQSNLVEVTVKDKDIG 113 (782)
Q Consensus 73 ~~~T~~i~~t~nP~wne~f~f~~~--~~~~~~L~v~V~d~d~~ 113 (782)
.++|.+.+...+|.|+|++.+.+. ......|.|.+++....
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~ 96 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSN 96 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccc
Confidence 578889899999999999998764 44577899999887543
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=83.26 E-value=9.8 Score=37.00 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=32.3
Q ss_pred eeeeccccCCCCCeeccEEEEEec--cCCCCeEEEEEEeCCC
Q 045512 73 KGIAKHLEKNQNPVWNQIFAFSKE--RLQSNLVEVTVKDKDI 112 (782)
Q Consensus 73 ~~~T~~i~~t~nP~wne~f~f~~~--~~~~~~L~v~V~d~d~ 112 (782)
.++|.+.+.+.+|.|||++.+.+. ......|.|+.++...
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 568999999999999999998764 3456789998887643
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=83.01 E-value=3.7 Score=40.06 Aligned_cols=58 Identities=9% Similarity=0.153 Sum_probs=34.8
Q ss_pred EEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCcCCCccEEEEEeccc
Q 045512 402 WIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLST 462 (782)
Q Consensus 402 ~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~ 462 (782)
.+.|.+.+++.+|.|+|+|.+.++. +...|.|++++-..-. +..++..+|.+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~---~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE---SKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS---SS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc---ccCccceeEEEEEEeee
Confidence 4688889999999999999999984 3558999999976432 11122789999999987
|
|
| >PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function | Back alignment and domain information |
|---|
Probab=82.37 E-value=9.2 Score=33.56 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=50.2
Q ss_pred EEEEEECCEEEeeccccCCCCCccccEEEEEEeCC--------CceEEEEEEeCCCCCCCCCCcCCCccEEEEEeccccc
Q 045512 393 YCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP--------CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLE 464 (782)
Q Consensus 393 yv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~--------~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~ 464 (782)
||.+.+-.....|..+....+|.+|-+-.|.|... ...+.|+++..-. .....||.++|++..+.
T Consensus 2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-------~d~~tla~~~i~l~~ll 74 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-------SDFETLAAGQISLRPLL 74 (107)
T ss_dssp EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-------S-EEEEEEEEE--SHHH
T ss_pred EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-------CCeEEEEEEEeechhhh
Confidence 66666655444444444588999999888887632 3479999988542 24679999999999985
Q ss_pred C--CcEEEEEEEceeeCCCCCccccEEEEEEEEE
Q 045512 465 T--DRLYTHYYPLLVLTPSGLKKNGELHLALRFT 496 (782)
Q Consensus 465 ~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
. +........|.+.. | ..-|.|...+++.
T Consensus 75 ~~~~~~i~~~~~l~g~~--~-~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 75 ESNGERIHGSATLVGVS--G-EDFGTLEYWIRLR 105 (107)
T ss_dssp H--S--EEEEEEE-BSS--S--TSEEEEEEEEEE
T ss_pred cCCCceEEEEEEEeccC--C-CeEEEEEEEEEec
Confidence 2 33456666776543 2 2459998888763
|
It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A. |
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=80.13 E-value=36 Score=32.62 Aligned_cols=87 Identities=16% Similarity=0.247 Sum_probs=56.7
Q ss_pred CCcEEEEEECCee-eecccccC-CCCCCcccceeEEEecCCCCCeEEEEEEEccCCCCCceeEEEEEeCCCcccccCCCC
Q 045512 223 PDAYVKIQLGNLV-RVTRPSHV-RSVNPVWNEEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTK 300 (782)
Q Consensus 223 ~dpyv~v~lg~~~-~kT~~~~~-~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~ 300 (782)
..-|+++.++++. .+|+...- ..-.-.|||.|.+.+.. ..+.|.++||.... ..+..|+.+.+++-...... ...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~-~~~ 113 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHT-STD 113 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccc-ccc
Confidence 5678999998864 44444321 12234578999998866 46789999998765 78899999999986654321 111
Q ss_pred CCCCeeEEccCC
Q 045512 301 LPDPRWFNLHKP 312 (782)
Q Consensus 301 ~~~~~w~~L~~~ 312 (782)
.....|+.....
T Consensus 114 ~~~~~~~eFsS~ 125 (168)
T PF15625_consen 114 NVPLEEYEFSSD 125 (168)
T ss_pred CCceEeEEEcCC
Confidence 114456655544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 782 | ||||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 5e-10 | ||
| 3n5a_A | 138 | Synaptotagmin-7, C2b-Domain, Calcium Bound Length = | 6e-10 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 8e-09 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 6e-06 | ||
| 1rh8_A | 142 | Three-Dimensional Structure Of The Calcium-Free Pic | 2e-08 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 6e-07 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 6e-07 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 6e-07 | ||
| 2k3h_A | 140 | Structural Determinants For Ca2+ And Pip2 Binding B | 6e-06 | ||
| 2chd_A | 142 | Crystal Structure Of The C2a Domain Of Rabphilin-3a | 7e-06 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 2e-05 | ||
| 3pfq_A | 674 | Crystal Structure And Allosteric Activation Of Prot | 2e-05 | ||
| 1a25_A | 149 | C2 Domain From Protein Kinase C (Beta) Length = 149 | 3e-05 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 4e-05 | ||
| 1w15_A | 153 | Rat Synaptotagmin 4 C2b Domain In The Presence Of C | 4e-05 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 4e-05 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 5e-05 | ||
| 2uzp_A | 144 | Crystal Structure Of The C2 Domain Of Human Protein | 5e-05 | ||
| 1k5w_A | 152 | Three-Dimensional Structure Of The Synaptotagmin 1 | 1e-04 | ||
| 2lha_A | 151 | Solution Structure Of C2b With Ip6 Length = 151 | 1e-04 | ||
| 1bci_A | 138 | C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minim | 1e-04 | ||
| 1cjy_A | 749 | Human Cytosolic Phospholipase A2 Length = 749 | 1e-04 | ||
| 1tjm_A | 159 | Crystallographic Identification Of Sr2+ Coordinatio | 2e-04 | ||
| 1rlw_A | 126 | Calcium-Phospholipid Binding Domain From Cytosolic | 2e-04 | ||
| 3b7y_A | 153 | Crystal Structure Of The C2 Domain Of The E3 Ubiqui | 3e-04 | ||
| 1byn_A | 128 | Solution Structure Of The Calcium-Bound First C2-Do | 4e-04 | ||
| 1rsy_A | 152 | Structure Of The First C2-domain Of Synaptotagmin I | 6e-04 | ||
| 3f04_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Len | 7e-04 | ||
| 4dnl_A | 140 | Crystal Structure Of A C2 Domain Of A Protein Kinas | 7e-04 | ||
| 3f00_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Wit | 7e-04 |
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140 | Back alignment and structure |
|
| >pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674 | Back alignment and structure |
|
| >pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144 | Back alignment and structure |
|
| >pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152 | Back alignment and structure |
|
| >pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151 | Back alignment and structure |
|
| >pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized Average Structure Length = 138 | Back alignment and structure |
|
| >pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749 | Back alignment and structure |
|
| >pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159 | Back alignment and structure |
|
| >pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic Phospholipase A2 Length = 126 | Back alignment and structure |
|
| >pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153 | Back alignment and structure |
|
| >pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128 | Back alignment and structure |
|
| >pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152 | Back alignment and structure |
|
| >pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143 | Back alignment and structure |
|
| >pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140 | Back alignment and structure |
|
| >pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 4e-47
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 29 TASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWN 88
++ S V+ + L V V+KA +L D SG DP+ ++LGN + + KN NP WN
Sbjct: 2 SSGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWN 61
Query: 89 QIFAFSKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147
++F F + + L EVTV D+D DF+G+V L + P Y L++
Sbjct: 62 KVFTFPIKDIHDVL-EVTVFDEDGDKPPDFLGKVAIPLLSIR-------DGQPNCYVLKN 113
Query: 148 RKGDKITQGEIMLAV 162
+ ++ +G I L +
Sbjct: 114 KDLEQAFKGVIYLEM 128
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 3e-21
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 11/139 (7%)
Query: 357 SSMSLRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRW 416
S S +GIL++ +L A +L+ GK D +C+ + GN ++T T+ L+P W
Sbjct: 3 SGSSGDVKDVGILQVKVLKAADLLAA-DFSGKS-DPFCLLELGNDRLQTHTVYKNLNPEW 60
Query: 417 NEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476
N+ +T+ + D V+ + VFD D +GKV I L ++ + + Y L
Sbjct: 61 NKVFTFPIKDIHDVLEVTVFD--EDGDKPPD----FLGKVAIPLLSIRDGQ--PNCYVLK 112
Query: 477 VLTPSGLKKNGELHLALRF 495
K G ++L +
Sbjct: 113 NKDLEQAFK-GVIYLEMDL 130
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 2e-15
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVR-SVNPVWNEEHMFVASEP 261
L+V V +A DL+ ++ D + ++LGN T V ++NP WN+ F +
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTH--TVYKNLNPEWNKVFTFPIKDI 71
Query: 262 FEDLIIVTV--EDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSL 314
D++ VTV ED + LG+ IP+ ++ P + L L
Sbjct: 72 -HDVLEVTVFDEDGD--KPPDFLGKVAIPLLSIRDGQ-------PNCYVLKNKDL 116
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 2e-38
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 9/136 (6%)
Query: 36 VEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIA------KHLEKNQNPVWNQ 89
E + V V+ L D+ G+ DPYV V L + K ++K+ NP WN+
Sbjct: 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNE 75
Query: 90 IFAFSKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDS-PLAPQWYRLED 147
F Q L+ V D++ + +DDF+G+V L+ +P P P + + L
Sbjct: 76 EILFRVHPQQHRLL-FEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHP 134
Query: 148 RKGDKITQGEIMLAVW 163
R +G + L +
Sbjct: 135 RSHKSRVKGYLRLKMT 150
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 1e-15
Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 20/152 (13%)
Query: 193 SKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHV-----RSVN 247
+ +RV V L + A D YV++ L + + S +S+N
Sbjct: 11 GLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLN 70
Query: 248 PVWNEEHMFVASEPFEDLIIVTV--EDRIGPGKDEILGREFIPVRNVPQRHETTKLPD-P 304
P WNEE +F P + ++ V E+R+ +D+ LG+ +P+ +P + + P
Sbjct: 71 PKWNEEILFRV-HPQQHRLLFEVFDENRL--TRDDFLGQVDVPLYPLPTENPRLERPYTF 127
Query: 305 RWFNLHKPSLSAEEGAEKKKEKFSSKILIRFC 336
+ F LH S K + + ++
Sbjct: 128 KDFVLHPRS---------HKSRVKGYLRLKMT 150
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 8e-15
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 27/144 (18%)
Query: 367 GILELGILSAKNLMPM----TSKDGKLTDAYCVAKYGNKW------IRTRTILDTLDPRW 416
I+ + +++ L S D Y + ++T+TI +L+P+W
Sbjct: 20 RIVRVRVIAGIGLAKKDILGAS------DPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKW 73
Query: 417 NEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476
NE+ + V+ + VFD ++DD +G+V + L L T+
Sbjct: 74 NEEILFRVHPQQHRLLFEVFD--ENRLTRDD----FLGQVDVPLYPLPTENPRLERPYTF 127
Query: 477 ---VLTPSGLKKN--GELHLALRF 495
VL P K G L L + +
Sbjct: 128 KDFVLHPRSHKSRVKGYLRLKMTY 151
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 1e-35
Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 10/120 (8%)
Query: 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERL 98
M L V V KA+ + + YV +K+ N K + + P W Q F F RL
Sbjct: 4 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 59
Query: 99 QSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEI 158
L V V +K + D VG V L + + +W L+ + EI
Sbjct: 60 DLGLT-VEVWNKGLIWDTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMA--DSEI 113
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 70.8 bits (173), Expect = 9e-15
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 201 LYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASE 260
+ L V V +A+ E + YV +++ N+ T VR P W ++ MF +
Sbjct: 4 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTI--AVRGSQPSWEQDFMFEINR 58
Query: 261 PFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAE 317
L V V ++ G D ++G +IP+R + Q +E W L ++ A+
Sbjct: 59 LDLGL-TVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEG---PGEWLTLDSQAIMAD 110
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-05
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 364 GSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWE 423
G + +L +G+ AK + Y K N T + P W + + +E
Sbjct: 2 GVMSLLCVGVKKAKFDGAQEK-----FNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFE 55
Query: 424 VYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTL--ETDRLYTHYYPLLVLTPS 481
+ +T+ V++ K D +G V I L T+ + + L
Sbjct: 56 INRLDLGLTVEVWN-------KGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLT---LDSQ 105
Query: 482 GLKKNGELHLALRFTC 497
+ + E+ T
Sbjct: 106 AIMADSEICGTKDPTF 121
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 3e-35
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 20/147 (13%)
Query: 28 KTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVW 87
K + + + + VV A+ L D +GS DPYV V++G K K + N NPVW
Sbjct: 5 KQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVW 64
Query: 88 NQIFAFSKERLQSNLVEVTVKDKD------------IGKDDFVGRVTFDLFEVPHRVPPD 135
+ F F S+ ++V V D+D DDF+G+ ++ + +
Sbjct: 65 EENFHFECHN-SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM--- 120
Query: 136 SPLAPQWYRLEDRKGDKITQGEIMLAV 162
WY L+ R G I L +
Sbjct: 121 ----DVWYNLDKRTDKSAVSGAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 4e-21
Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 10/145 (6%)
Query: 354 LQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLD 413
++ S + + + ++ A+ L K G +D Y + G RT+TI L+
Sbjct: 4 VKQSVLDGTSKWSAKISITVVCAQGLQAK-DKTGS-SDPYVTVQVGKTKKRTKTIYGNLN 61
Query: 414 PRWNEQYTWEVYDPCTVITIGVFD-----NCHVNGSKDDAIDQRIGKVRIRLSTLETDRL 468
P W E + +E ++ I + V D V D +G+ I + TL +
Sbjct: 62 PVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE-- 119
Query: 469 YTHYYPLLVLTPSGLKKNGELHLAL 493
+Y L T G + L +
Sbjct: 120 MDVWYNLDKRTDKSAVS-GAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 2e-16
Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 27/145 (18%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFE 263
+ + V AQ L ++ + D YV +Q+G + T+ + ++NPVW E F +
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTK-TIYGNLNPVWEENFHFECHNSSD 77
Query: 264 DLII----------VTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPS 313
+ + V+ R D+ LG+ I VR + W+NL K
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM-------DVWYNLDK-- 128
Query: 314 LSAEEGAEKKKEKFSSKILIRFCLE 338
K S I + +E
Sbjct: 129 -------RTDKSAVSGAIRLHISVE 146
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-34
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 11/116 (9%)
Query: 40 HYLFVNVVKARNL---PVMDVSGSLDPYVEVKLG---NYKGIAKHLEKNQNPVWNQIFAF 93
H V V++A + D+ + DPYVE+ + + + +H + NPVWN+ F F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 94 SKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149
+ Q N++E+T+ D + D+ +G TF + + + +
Sbjct: 63 ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE-----VPFIFNQVT 113
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 3e-16
Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 22/137 (16%)
Query: 369 LELGILSAKNLMPMTSKD--GKLTDAYCVAKYG---NKWIRTRTILDTLDPRWNEQYTWE 423
+ +L A + D D Y + RTR + ++P WNE + +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDT-PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 63
Query: 424 VYDPCT-VITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSG 482
+ V+ I + D + +D+ +G +S+++ +
Sbjct: 64 LDPNQENVLEITLMD-------ANYVMDETLGTATFTVSSMKVGEKKEVPFI-------- 108
Query: 483 LKKNGELHLALRFTCTA 499
+ E+ L + +
Sbjct: 109 FNQVTEMVLEMSLEVAS 125
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 2e-13
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 11/117 (9%)
Query: 202 YYLRVFVFEAQDLV---PSEEGRAPDAYVKIQLGNLVRVTRPSHV--RSVNPVWNEEHMF 256
+ V V A + + PD YV++ + + + +NPVWNE F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 257 VASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPS 313
+ E+++ +T+ D DE LG V ++ + F ++ +
Sbjct: 63 ILDPNQENVLEITLMDA-NYVMDETLGTATFTVSSMKVGEKKEV-----PFIFNQVT 113
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-33
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSN 101
L V V A N+P G DP V V + K K ++ NPVWN+I F + +
Sbjct: 9 LRVIVESASNIPKTK-FGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLD 67
Query: 102 L---VEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGE 157
+ + VKD + IG++ +G T L ++ P + L + KG T
Sbjct: 68 FSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPY--KLISLLNEKGQD-TGAT 124
Query: 158 IMLAV 162
I L +
Sbjct: 125 IDLVI 129
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 2e-21
Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 14/140 (10%)
Query: 362 RKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYT 421
GS G+L + + SA N+ D + ++ +T+ + + L+P WNE
Sbjct: 2 SSGSSGMLRVIVESASNIPKT---KFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILE 58
Query: 422 WEVY----DPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477
+++ D + + I V D ++ IG + L L D+ + Y L+
Sbjct: 59 FDLRGIPLDFSSSLGIIVKD--FETIGQNK----LIGTATVALKDLTGDQSRSLPYKLIS 112
Query: 478 LT-PSGLKKNGELHLALRFT 496
L G + L + +
Sbjct: 113 LLNEKGQDTGATIDLVIGYD 132
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 4e-14
Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 19/137 (13%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVR-SVNPVWNEEHMFVASEPF 262
LRV V A ++ P + PD V + + + T+ V +NPVWNE F
Sbjct: 9 LRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTK--KVDNELNPVWNEILEFDLRGIP 65
Query: 263 EDL---IIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEG 319
D + + V+D G+++++G + ++++ + L
Sbjct: 66 LDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQ-----SRSLPYKLISLL------ 114
Query: 320 AEKKKEKFSSKILIRFC 336
+K + + I +
Sbjct: 115 -NEKGQDTGATIDLVIG 130
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 3e-33
Identities = 69/323 (21%), Positives = 115/323 (35%), Gaps = 64/323 (19%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIA---KHLEKNQNPVWN 88
Y L V +++A +LP D +G DPYV++ L + K K NP++N
Sbjct: 14 RYL--YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFN 71
Query: 89 QIFAF--SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145
+ F F L + +V D D + D +G+V D PPD PL W +
Sbjct: 72 ETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDI 128
Query: 146 EDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDAHNISQTNLANTISKVYFSPKLYYLR 205
+ +K GE+ + + + P L
Sbjct: 129 LEGGSEKADLGELNFS---------------------------------LCYLPTAGLLT 155
Query: 206 VFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTR----PSHVRSVNPVWNEEHMFVASEP 261
V + +A +L + D YVK L + R + ++NP +NE +F
Sbjct: 156 VTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF--DVA 213
Query: 262 FEDL----IIVTVEDRIGPGKDEILGREFIPVRNV---PQRH-----ETTKLPDPRWFNL 309
E + + + V D G +E++G + + H + P W L
Sbjct: 214 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 273
Query: 310 H--KPSLSAEEGAEKKKEKFSSK 330
K S +G + EK +S+
Sbjct: 274 VEEKTLSSFTKGGKGLSEKENSE 296
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 7e-16
Identities = 53/286 (18%), Positives = 98/286 (34%), Gaps = 65/286 (22%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHV--RSVNPVWN 251
+ + L V + +A DL + D YVKI L + + V +++NP++N
Sbjct: 12 ALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFN 71
Query: 252 EEHMFVASEPFEDLIIVTVE------DRIGPGKDEILGREFIPVRNVPQRHETTKLPDPR 305
E F S P +L + DR + +++G+ + + P
Sbjct: 72 ET--FQFSVPLAELAQRKLHFSVYDFDRF--SRHDLIGQVVLDNLLELAEQPPDR---PL 124
Query: 306 WFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGS 365
W ++ + + E +FS P++
Sbjct: 125 WRDILEGGSEKADLGEL--------------------------NFSLCYLPTA------- 151
Query: 366 IGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIR-----TRTILDTLDPRWNEQY 420
G+L + I+ A NL M +D Y A ++ R T +TL+P +NE
Sbjct: 152 -GLLTVTIIKASNLKAM--DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEAL 208
Query: 421 TWEVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTL 463
++V ++I V D + ++ IG R+
Sbjct: 209 VFDVAPESVENVGLSIAVVD--YDCIGHNEV----IGVCRVGPEAA 248
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 122 bits (306), Expect = 3e-32
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 8/116 (6%)
Query: 37 EQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKE 96
+ L V V KA+ + + YV +K+ N + + + P W Q F F
Sbjct: 11 GILSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAV-RGSQPSWEQDFMFEIN 66
Query: 97 RLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK 152
RL L V V +K + D VG V L + + +W L+ +
Sbjct: 67 RLDLGLT-VEVWNKGLIWDTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMA 118
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 8e-13
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 10/118 (8%)
Query: 200 KLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVAS 259
L L V V +A+ E+ + YV +++ N+ T VR P W ++ MF +
Sbjct: 12 ILSLLCVGVKKAKFDGAQEKF---NTYVTLKVQNVESTTI--AVRGSQPSWEQDFMFEIN 66
Query: 260 EPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAE 317
L V V ++ G D ++G +IP+R + Q +E W L ++ A+
Sbjct: 67 RLDLGL-TVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEG---PGEWLTLDSQAIMAD 119
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 18/136 (13%)
Query: 364 GSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWE 423
G + +L +G+ AK + Y K N T + P W + + +E
Sbjct: 11 GILSLLCVGVKKAKFDGAQEK-----FNTYVTLKVQNVESTTIAV-RGSQPSWEQDFMFE 64
Query: 424 VYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTL--ETDRLYTHYYPLLVLTPS 481
+ +T+ V++ K D +G V I L T+ + + L
Sbjct: 65 INRLDLGLTVEVWN-------KGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD---SQ 114
Query: 482 GLKKNGELHLALRFTC 497
+ + E+ T
Sbjct: 115 AIMADSEICGTKDPTF 130
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 5e-32
Identities = 71/301 (23%), Positives = 113/301 (37%), Gaps = 58/301 (19%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIA---KHLEKNQNPVWN 88
YD Q + L V +++A LP +D+ G+ DPYV+V L K K K NPV+N
Sbjct: 13 DYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 70
Query: 89 QIFAF--SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145
+ F F L + + V D D K D +G + + V
Sbjct: 71 EQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVTEEWRDLQ 126
Query: 146 EDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDAHNISQTNLANTISKVYFSPKLYYLR 205
K ++ G+I ++ A + L
Sbjct: 127 SAEKEEQEKLGDICFSLRYVPTAGK---------------------------------LT 153
Query: 206 VFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTR----PSHVRSVNPVWNEEHMF-VASE 260
V + EA++L + G D YVKI L + + ++NP +NE F V E
Sbjct: 154 VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 213
Query: 261 PFEDL-IIVTVEDRIGPGKDEILGREFIPVRNVP--QRHETTKLPDPR-----WFNLHKP 312
+ + ++VTV D GK++ +G+ F+ + RH + L +PR W L
Sbjct: 214 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273
Query: 313 S 313
Sbjct: 274 E 274
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 1e-18
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 22/137 (16%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLE-----KNQNPVWNQIFAF--S 94
L V +++A+NL MDV G DPYV++ L K + NP +N+ F+F
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 211
Query: 95 KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRV--------PPDSPLAPQWYRL 145
E++Q V VTV D D IGK+D +G+V + P P+A QW+ L
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 270
Query: 146 EDRKGDKITQGEIMLAV 162
+ + + MLAV
Sbjct: 271 QVE-----EEVDAMLAV 282
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 7e-16
Identities = 69/327 (21%), Positives = 121/327 (37%), Gaps = 80/327 (24%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHV--RSVNPVWN 251
+ + + L V + +A +L + G D YVK+ L + + V +++NPV+N
Sbjct: 11 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 70
Query: 252 EEHMFVASEPFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWF 307
E+ F P+ +L +++ V D K +I+G +P+ V H T W
Sbjct: 71 EQ--FTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT-----EEWR 123
Query: 308 NLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIG 367
+L +E FS P++ G
Sbjct: 124 DLQSAEKEEQEKLGDI-------------------------CFSLRYVPTA--------G 150
Query: 368 ILELGILSAKNLMPMTSKDGKLTDAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTW 422
L + IL AKNL M G L+D Y K +T +TL+P +NE +++
Sbjct: 151 KLTVVILEAKNLKKM--DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 208
Query: 423 EVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLET------------DR 467
EV + + V D + K+DA IGKV + ++ R
Sbjct: 209 EVPFEQIQKVQVVVTVLD--YDKIGKNDA----IGKVFVGYNSTGAELRHWSDMLANPRR 262
Query: 468 LYTHYYPLLVLTPSGLKKNGELHLALR 494
++ L +++ + LA++
Sbjct: 263 PIAQWHTLQ------VEEEVDAMLAVK 283
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 9e-31
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 9/148 (6%)
Query: 37 EQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIA------KHLEKNQNPVWNQI 90
+ + V V+ L D+ G+ DPYV V L + K ++K+ NP WN+
Sbjct: 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEE 64
Query: 91 FAFSKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPD-SPLAPQWYRLEDR 148
F + + V D++ + +DDF+G+V L+ +P P P + + L R
Sbjct: 65 ILFRVLPQRHRI-LFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR 123
Query: 149 KGDKITQGEIMLAVWIGTQADESFSEAW 176
+G + L + + A
Sbjct: 124 SHKSRVKGYLRLKMTYLPKNGSEDENAD 151
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 3e-15
Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 16/169 (9%)
Query: 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHV-----RSVNPVWNEEHMFV 257
+RV V L + A D YV++ L + + S +S+NP WNEE +F
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 258 ASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPD-PRWFNLHKPSLSA 316
P I+ V D +D+ LG+ +P+ +P + + P + F LH S
Sbjct: 69 V-LPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS--- 124
Query: 317 EEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGS 365
K + + ++ DE+ + +L+P + L +
Sbjct: 125 ------HKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPD 167
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 2e-14
Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 27/150 (18%)
Query: 361 LRKGSIGILELGILSAKNLMPM----TSKDGKLTDAYCVAKYGNKW------IRTRTILD 410
L ++ + +++ L S D Y + ++T+TI
Sbjct: 2 LHNDDTRVVRVKVIAGIGLAKKDILGAS------DPYVRVTLYDPMSGILTSVQTKTIKK 55
Query: 411 TLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDR--- 467
+L+P+WNE+ + V I VFD ++DD +G+V + L L T+
Sbjct: 56 SLNPKWNEEILFRVLPQRHRILFEVFD--ENRLTRDD----FLGQVDVPLYPLPTENPRM 109
Query: 468 LYTHYYPLLVLTPSGLKKN--GELHLALRF 495
+ + VL P K G L L + +
Sbjct: 110 ERPYTFKDFVLHPRSHKSRVKGYLRLKMTY 139
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 4e-27
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI-AKHLEKNQNPVWNQIFAFSKERLQS 100
L V +V A+ L D ++DPYV++ P WN+ F F+ +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 101 NLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIM 159
L + + DKD +DD VG T L V + + P Y + + K GEI
Sbjct: 72 EL-KAKIFDKDVGTEDDAVGEATIPL----EPVFVEGSIPPTAYNVVKDEEYK---GEIW 123
Query: 160 LAV 162
+A+
Sbjct: 124 VAL 126
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 2e-18
Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 12/135 (8%)
Query: 363 KGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILD-TLDPRWNEQYT 421
G G LE+ ++SAK L D Y + ++ P WNE +
Sbjct: 6 SGPHGTLEVVLVSAKGLEDA-DFLNN-MDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFI 63
Query: 422 WEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPS 481
+ V + T + +FD G++DD +G+ I L + + +V
Sbjct: 64 FTVSEGTTELKAKIFD--KDVGTEDD----AVGEATIPLEPVFVEGSIPPTAYNVVKD-- 115
Query: 482 GLKKNGELHLALRFT 496
+ GE+ +AL F
Sbjct: 116 -EEYKGEIWVALSFK 129
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-16
Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 21/135 (15%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFE 263
L V + A+ L ++ D YV++ + + + P WNE +F SE
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 264 DLIIVTV--EDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAE 321
+L + +D +D+ +G IP+ V P +N+
Sbjct: 72 EL-KAKIFDKDVG--TEDDAVGEATIPLEPVFVEGSI----PPTAYNV------------ 112
Query: 322 KKKEKFSSKILIRFC 336
K E++ +I +
Sbjct: 113 VKDEEYKGEIWVALS 127
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 3e-25
Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 8/146 (5%)
Query: 33 YDLVEQM--HYLFVNVVKARNL---PVMDVSGSLDPYVEVKLG---NYKGIAKHLEKNQN 84
+ +VE H V V++A + D+ + DPYVE+ + + + +H + N
Sbjct: 9 HIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDIN 68
Query: 85 PVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYR 144
PVWN+ F F + Q N++E+T+ D + D+ +G TF + + + P
Sbjct: 69 PVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVT 128
Query: 145 LEDRKGDKITQGEIMLAVWIGTQADE 170
+ L + E
Sbjct: 129 EMVLEMSLEVCSCPDLRFSMALCDQE 154
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 56.5 bits (135), Expect = 3e-08
Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 14/114 (12%)
Query: 367 GILELGILSAKNLMPMTSKD--GKLTDAYCVAKYG---NKWIRTRTILDTLDPRWNEQYT 421
+ +L A + D D Y + RTR + ++P WNE +
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDT-PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 76
Query: 422 WEVYDP-CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYP 474
+ + V+ I + D +V D+ +G +S+++ +
Sbjct: 77 FILDPNQENVLEITLMDANYVM-------DETLGTATFTVSSMKVGEKKEVPFI 123
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 53.0 bits (126), Expect = 3e-07
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 202 YYLRVFVFEAQDLVPSEEG---RAPDAYVKIQLGNLVRVTRPSHV--RSVNPVWNEEHMF 256
+ V V A + G PD YV++ + + + +NPVWNE F
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77
Query: 257 VASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWF 307
+ E+++ +T+ D DE LG V ++ +
Sbjct: 78 ILDPNQENVLEITLMDA-NYVMDETLGTATFTVSSMKVGEKKEVPFIFNQV 127
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 5e-25
Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 7/139 (5%)
Query: 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQN 84
S + L + V+ A+ PYVEV + + +
Sbjct: 21 DSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNS 80
Query: 85 PVWNQIFAFSKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWY 143
P W Q + + V + D +G D++E + L
Sbjct: 81 PKWKQPLTVIVTPVSK--LHFRVWSHQTLKSDVLLGTAALDIYETL--KSNNMKLEEVVV 136
Query: 144 RLE--DRKGDKITQGEIML 160
L+ K T G++ +
Sbjct: 137 TLQLGGDKEPTETIGDLSI 155
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 1e-16
Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 14/147 (9%)
Query: 351 SSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILD 410
S Q SM L++ ++SAK K+ Y + +T +
Sbjct: 21 DSGSQLGSMGSLTMK-SQLQITVISAKLKENK--KNWFGPSPYVEVTVDGQSKKTEKCNN 77
Query: 411 TLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYT 470
T P+W + T V P + + V+ H D +G + +
Sbjct: 78 TNSPKWKQPLTVIV-TPVSKLHFRVWS--HQTLKSDV----LLGTAALDIYETLKSNNMK 130
Query: 471 HYYPLLVLTPSGLKKN----GELHLAL 493
++ L G K+ G+L + L
Sbjct: 131 LEEVVVTLQLGGDKEPTETIGDLSICL 157
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 3e-14
Identities = 16/137 (11%), Positives = 41/137 (29%), Gaps = 12/137 (8%)
Query: 199 PKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVA 258
L++ V A+ + P YV++ + + T + + +P W + +
Sbjct: 33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCN-NTNSPKWKQPLTVIV 91
Query: 259 SEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEE 318
+ + V D +LG + + + + + L
Sbjct: 92 TP--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMK--LEEVVVTLQLGG----- 142
Query: 319 GAEKKKEKFSSKILIRF 335
+K+ + + I
Sbjct: 143 --DKEPTETIGDLSICL 157
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 1e-22
Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 25/135 (18%)
Query: 41 YLFVNVVKARNLPVMDVS-----------GSLDPYVEVKLGNYKGIA-KHLEKNQNPVWN 88
L + + +A +L S LDPY+ + + + + +K +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 89 QIFAFSKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147
F + +E+ V IG DDFV T E+ W LE
Sbjct: 67 DEFVTDVCNGRK--IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED---WIDLE- 120
Query: 148 RKGDKITQGEIMLAV 162
+G++ + +
Sbjct: 121 ------PEGKVYVII 129
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 5e-18
Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 27/145 (18%)
Query: 367 GILELGILSAKNLMPM---------TSKDGKLTDAYCVAKYGN-KWIRTRTILDTLDPRW 416
G+L++ I A +L P L D Y + + +T T T P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 417 NEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTL--ETDRLYTHYYP 474
++++ +V + I + VF + + DD + I+ L R + +
Sbjct: 66 HDEFVTDVCNG-RKIELAVFHDAPI--GYDD----FVANCTIQFEELLQNGSRHFEDWID 118
Query: 475 LLVLTPSGLKKNGELHLALRFTCTA 499
L+ G++++ + + ++
Sbjct: 119 --------LEPEGKVYVIIDLSGSS 135
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 6e-15
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 16/118 (13%)
Query: 203 YLRVFVFEAQDLVP-----------SEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWN 251
L++ + EA L P + D Y+ + + + + ++ +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 252 EEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNL 309
+E + I + V G D+ + I + Q W +L
Sbjct: 67 DEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHF---EDWIDL 119
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 2e-22
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 23/125 (18%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKL--------------GNYKGIAKHLEKNQNPVW 87
L +++++ARNL D +G DP+V+V L YK K+++K+ NP W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 88 NQIFAF---SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWY 143
NQ + S E+L +EVTV D D +DF+G V DL H P+WY
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN-----TPRWY 134
Query: 144 RLEDR 148
L+++
Sbjct: 135 PLKEQ 139
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 4e-11
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 31/139 (22%)
Query: 200 KLYY----LRVFVFEAQDLVPSEEGRAPDAYVKIQL-----------GNLVRVTRPSHV- 243
++ Y L + + +A++LVP + D +VK+ L R +
Sbjct: 12 QINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYV 71
Query: 244 -RSVNPVWNEEHMFVASEPFEDL----IIVTV--EDRIGPGKDEILGREFIPVRNVPQRH 296
+S+NP WN+ ++ S E L + VTV DR ++ LG I + +
Sbjct: 72 QKSLNPEWNQTVIY-KSISMEQLMKKTLEVTVWDYDRF--SSNDFLGEVLIDLSSTSHLD 128
Query: 297 ETTKLPDPRWFNLHKPSLS 315
T PRW+ L + + S
Sbjct: 129 NT-----PRWYPLKEQTES 142
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 8e-08
Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 26/128 (20%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCV--------------AKYGNKWIRTRTILDTL 412
G L + IL A+NL+P + +D + RT+ + +L
Sbjct: 18 GNLIIHILQARNLVPRDN--NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSL 75
Query: 413 DPRWNEQYTWEVYDP----CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRL 468
+P WN+ ++ + + V+D + S +D +G+V I LS+
Sbjct: 76 NPEWNQTVIYKSISMEQLMKKTLEVTVWD--YDRFSSND----FLGEVLIDLSSTSHLDN 129
Query: 469 YTHYYPLL 476
+YPL
Sbjct: 130 TPRWYPLK 137
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 3e-21
Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 22/134 (16%)
Query: 41 YLFVNVVKARNLPVMDVSG----------SLDPYVEVKLGNYK-GIAKHLEKNQNPVWNQ 89
YL V + +A L S LDPY+ V + + G +K P +N+
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 90 IFAFSKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDR 148
F + +E+ V + +G D FV T E+ S W LE
Sbjct: 90 EFCANVTDGGH--LELAVFHETPLGYDHFVANCTLQFQELLRT-TGASDTFEGWVDLE-- 144
Query: 149 KGDKITQGEIMLAV 162
+G++ + +
Sbjct: 145 -----PEGKVFVVI 153
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 1e-18
Identities = 31/161 (19%), Positives = 51/161 (31%), Gaps = 22/161 (13%)
Query: 347 STHFSSDLQPSSMSLRKGS--IGILELGILSAKNLMPM--------TSKDGKLTDAYCVA 396
H SS L P G L + I A L P K +L D Y
Sbjct: 7 HHHHSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTV 66
Query: 397 KYGNKWI-RTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGK 455
+ +T T T P +NE++ V D + + VF + D +
Sbjct: 67 SVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-GHLELAVFHETPL--GYDH----FVAN 119
Query: 456 VRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFT 496
++ L + + V L+ G++ + + T
Sbjct: 120 CTLQFQELLRTTGASDTFEGWVD----LEPEGKVFVVITLT 156
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 2e-15
Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 13/119 (10%)
Query: 203 YLRVFVFEAQDLVP----------SEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNE 252
YLRV + EA L P + + D Y+ + + + + ++ P +NE
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 253 EHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHK 311
E ++ + + V G D + + + + + + + W +L
Sbjct: 90 EFCANVTDGGH--LELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFE-GWVDLEP 145
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 4e-21
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLG-NYKGIAKH----LEKNQNPVWNQIFAFS-K 95
L V V A+NL MD +G DPYV++KL + K +K ++ + NP WN+ F F K
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 96 ERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKI 153
E + + V + D D ++DF+G ++F + + W++L ++ +
Sbjct: 93 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGI----SELQKAGV--DGWFKLLSQEEGEY 145
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 3e-11
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCV-----AKYGNKWIRTRTILDTLDPRWNEQYT 421
+L + + AKNL+PM L+D Y +T+TI +L+P WNE +
Sbjct: 31 EVLIVVVRDAKNLVPM--DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFR 88
Query: 422 WEVY--DPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476
+++ D +++ ++D S++D +G + +S L+ + ++ LL
Sbjct: 89 FQLKESDKDRRLSVEIWD--WDLTSRND----FMGSLSFGISELQKAGV-DGWFKLL 138
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-10
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 200 KLYY----LRVFVFEAQDLVPSEEGRAPDAYVKIQL-----GNLVRVTRPSHVRSVNPVW 250
+ + L V V +A++LVP + D YVK++L + T+ + S+NP W
Sbjct: 25 QAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK-TIKCSLNPEW 83
Query: 251 NEEHMFVASEPFED-LIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNL 309
NE F E +D + V + D +++ +G + + K WF L
Sbjct: 84 NETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQ------KAGVDGWFKL 137
Query: 310 HKPSLSAEEG 319
LS EEG
Sbjct: 138 ----LSQEEG 143
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 8e-21
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 22/137 (16%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLE-----KNQNPVWNQIFAF--S 94
L V +++A+NL MDV G DPYV++ L K + NP +N+ F+F
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 95 KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRV--------PPDSPLAPQWYRL 145
E++Q V VTV D D IGK+D +G+V + P P+A QW+ L
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 145
Query: 146 EDRKGDKITQGEIMLAV 162
+ + + MLAV
Sbjct: 146 QVE-----EEVDAMLAV 157
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 1e-10
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 197 FSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLVRVTRPSHVR--SVNPVWNE 252
+ P L V + EA++L + G D YVKI L + + ++ ++NP +NE
Sbjct: 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE 79
Query: 253 EHMFVASEPFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQ--RHETTKLPDPR- 305
F PFE + ++VTV D GK++ +G+ F+ + RH + L +PR
Sbjct: 80 S--FSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRR 137
Query: 306 ----WFNLHKPS 313
W L
Sbjct: 138 PIAQWHTLQVEE 149
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 8e-21
Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 19/129 (14%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIA-----KHLEKNQNPV 86
+D + H L V ++ A++LP + +PYV++ + K ++K P
Sbjct: 15 WFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 72
Query: 87 WNQIFAF---SKERLQSNLVEVTVKDKD---IGKDDFVGRVTFDLFEVPHRVPPDSPLAP 140
WNQ F + + + ++E+T+ D+ + +F+G + +L P
Sbjct: 73 WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA------LLDDEP 126
Query: 141 QWYRLEDRK 149
WY+L+
Sbjct: 127 HWYKLQTHD 135
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 2e-13
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 17/136 (12%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLVRVTRPSHV--RSVNPV 249
K++F + L V + A+DL E+GR + YVKI + R + +++ P
Sbjct: 13 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 72
Query: 250 WNEEHMFVASEPFEDL----IIVTV--EDRIGPGKDEILGREFIPVRNVPQRHETTKLPD 303
WN+ ++ + + + +T+ + R+ + E LG I + E
Sbjct: 73 WNQTFIY-SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE------ 125
Query: 304 PRWFNLHKPSLSAEEG 319
P W+ L G
Sbjct: 126 PHWYKLQTHDSGPSSG 141
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 6e-08
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 18/120 (15%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCV------AKYGNKWIRTRTILDTLDPRWNEQY 420
L + IL AK+L DG+ + Y NK RT+T+ TL+P+WN+ +
Sbjct: 21 HQLIVTILGAKDLPSRE--DGRPRNPYVKIYFLPDRSDKNKR-RTKTVKKTLEPKWNQTF 77
Query: 421 TWEVYDPCTVIT----IGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476
+ I ++D V + + +G++ I L T D H+Y L
Sbjct: 78 IYSPVHRREFRERMLEITLWDQARVREEESEF----LGEILIELETALLDDE-PHWYKLQ 132
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 1e-20
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIA---KHLEKNQNPVWN 88
Y+ Q L V ++KA+ LP D SG+ DP+V++ L K K KN NP WN
Sbjct: 20 GYN--FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 77
Query: 89 QIFAF---SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYR 144
+ F F E++ ++ + V D D ++D +G V+ L +V + + W
Sbjct: 78 ETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL-----TQMQTFWKD 132
Query: 145 LEDRKGDK 152
L+
Sbjct: 133 LKPSGPSS 140
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 3e-11
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 16/131 (12%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHV--RSVNPVWN 251
V ++ + L V + +AQ+L + D +VKI L + + V +++NP WN
Sbjct: 18 SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 77
Query: 252 EEHMFVASEPFEDL----IIVTV--EDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPR 305
E +F P+E + + + V DR +++ +G IP+ V T
Sbjct: 78 ETFLFEGF-PYEKVVQRILYLQVLDYDRF--SRNDPIGEVSIPLNKVDLTQMQT-----F 129
Query: 306 WFNLHKPSLSA 316
W +L S+
Sbjct: 130 WKDLKPSGPSS 140
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 5e-08
Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAKY---GNKWIRTRTILDTLDPRWNEQYTWE 423
L + I+ A+ L +D + + T+ L+P WNE + +E
Sbjct: 26 STLTVKIMKAQELPAKD--FSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE 83
Query: 424 VYDPCTVIT----IGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475
+ V+ + V D + S++D IG+V I L+ ++ ++ T + L
Sbjct: 84 GFPYEKVVQRILYLQVLD--YDRFSRND----PIGEVSIPLNKVDLTQMQTFWKDL 133
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 2e-20
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKG-IAKH----LEKNQNPVWNQIFAF--S 94
L V +++ +L MD +G DP+V++ L G AKH +K NP +N+ F +
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 95 KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVP--------PDSPLAPQWYRL 145
L ++++V D D +D++G + R+ D + +W++L
Sbjct: 99 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE-RWHQL 157
Query: 146 EDRK 149
++
Sbjct: 158 QNEN 161
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 17/140 (12%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL---GNLVRVTRPSHVR-SVNPV 249
+ +S + L V + L + D +VK+ L + + ++NP
Sbjct: 29 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 88
Query: 250 WNEEHMFVASEPFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQ--RHETTKLPD 303
+NE F DL + ++V D ++ +G + + + +H L +
Sbjct: 89 FNE--EFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKN 146
Query: 304 PR-----WFNLHKPSLSAEE 318
W L + + +
Sbjct: 147 KDKKIERWHQLQNENHVSSD 166
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 5e-05
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 22/120 (18%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAK----YGNKWI---RTRTILDTLDPRWNEQ 419
G L +GI+ +L M + +D + K +T+ TL+P +NE+
Sbjct: 37 GGLIVGIIRCVHLAAMDAN--GYSDPFV--KLWLKPDMGKKAKHKTQIKKKTLNPEFNEE 92
Query: 420 YTWEVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476
+ +++ + I V+D + G +D IG ++ +S H+Y L
Sbjct: 93 FFYDIKHSDLAKKSLDISVWD--YDIGKSNDY----IGGCQLGISAKGERL--KHWYECL 144
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-20
Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIA-----KHLEKNQNPV 86
+D + H L V ++ A++LP + +PYV++ + K ++K P
Sbjct: 12 WFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 69
Query: 87 WNQIFAF---SKERLQSNLVEVTVKDKD---IGKDDFVGRVTFDLFEVPHRVPPDSPLAP 140
WNQ F + + + ++E+T+ D+ + +F+G + +L P
Sbjct: 70 WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA------LLDDEP 123
Query: 141 QWYRLE 146
WY+L+
Sbjct: 124 HWYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 8e-13
Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLVRVTRPSHV--RSVNPV 249
K++F + L V + A+DL E+GR + YVKI + R + +++ P
Sbjct: 10 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 69
Query: 250 WNEEHMFVASEPFEDL----IIVTV--EDRIGPGKDEILGREFIPVRNVPQRHETTKLPD 303
WN+ ++ + + + +T+ + R+ + E LG I + E
Sbjct: 70 WNQTFIY-SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE------ 122
Query: 304 PRWFNLH 310
P W+ L
Sbjct: 123 PHWYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-07
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 18/119 (15%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCV------AKYGNKWIRTRTILDTLDPRWNEQY 420
L + IL AK+L DG+ + Y NK RT+T+ TL+P+WN+ +
Sbjct: 18 HQLIVTILGAKDLPSRE--DGRPRNPYVKIYFLPDRSDKNKR-RTKTVKKTLEPKWNQTF 74
Query: 421 TWEVYDPCT----VITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475
+ ++ I ++D V + + +G++ I L T D H+Y L
Sbjct: 75 IYSPVHRREFRERMLEITLWDQARVREEESEF----LGEILIELETALLDDE-PHWYKL 128
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 3e-20
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 13/121 (10%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIA---KHLEKNQNPVWN 88
YD Q + L V +++A LP +D+ G+ DPYV+V L K K K NPV+N
Sbjct: 28 DYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 85
Query: 89 QIFAF--SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145
+ F F L + + V D D K D +G + + V +W L
Sbjct: 86 EQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVT-EEWRDL 140
Query: 146 E 146
+
Sbjct: 141 Q 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-10
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHV--RSVNPVWN 251
+ + + L V + +A +L + G D YVK+ L + + V +++NPV+N
Sbjct: 26 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 85
Query: 252 EEHMFVASEPFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWF 307
E F P+ +L +++ V D K +I+G +P+ V H T W
Sbjct: 86 E--QFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE-----EWR 138
Query: 308 NLH 310
+L
Sbjct: 139 DLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-08
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAK---YGNKWIRTRTILDTLDPRWNEQYTWE 423
L +GI+ A L + G +D Y K T+ TL+P +NEQ+T++
Sbjct: 34 NQLLVGIIQAAELPALDM--GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK 91
Query: 424 VYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476
V + + V+D SK D IG+ ++ ++T++ + + L
Sbjct: 92 VPYSELGGKTLVMAVYD--FDRFSKHDI----IGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 3e-20
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIA---KHLEKNQNPVWN 88
YD Q + L V +++A LP +D+ G+ DPYV+V L K K K NPV+N
Sbjct: 36 DYD--FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 93
Query: 89 QIFAF--SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145
+ F F L + + V D D K D +G + + V +W L
Sbjct: 94 EQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM----NTVDFGHVT-EEWRDL 148
Query: 146 EDRK 149
+ +
Sbjct: 149 QSAE 152
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-10
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHV--RSVNPVWN 251
+ + + L V + +A +L + G D YVK+ L + + V +++NPV+N
Sbjct: 34 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 93
Query: 252 EEHMFVASEPFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWF 307
E F P+ +L +++ V D K +I+G +P+ V H T W
Sbjct: 94 E--QFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE-----EWR 146
Query: 308 NLH 310
+L
Sbjct: 147 DLQ 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-08
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAK---YGNKWIRTRTILDTLDPRWNEQYTWE 423
L +GI+ A L + G +D Y K T+ TL+P +NEQ+T++
Sbjct: 42 NQLLVGIIQAAELPALDM--GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK 99
Query: 424 VYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476
V + + V+D SK D IG+ ++ ++T++ + + L
Sbjct: 100 VPYSELGGKTLVMAVYD--FDRFSKHDI----IGEFKVPMNTVDFGHVTEEWRDLQ 149
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 4e-20
Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 17/121 (14%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLE-----KNQNPVWNQIFAF--S 94
+ VN++KARNL MD+ G+ DPYV+V L + + +N NP++N+ FAF
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 95 KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVP--------PDSPLAPQWYRL 145
E+L+ + +TV DKD + ++D +G++ P V P P+A QW++L
Sbjct: 78 TEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA-QWHQL 136
Query: 146 E 146
+
Sbjct: 137 K 137
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 4e-10
Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 17/128 (13%)
Query: 197 FSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLVRVTRPSHV--RSVNPVWNE 252
++P + V + +A++L + G D YVK+ L + + + R++NP++NE
Sbjct: 11 YNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNE 70
Query: 253 EHMFVASEPFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQ--RH-----ETTKL 301
F P E L II+TV D+ +++++G+ ++ ++ P +H +
Sbjct: 71 SFAF--DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQ 128
Query: 302 PDPRWFNL 309
P +W L
Sbjct: 129 PVAQWHQL 136
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 16/109 (14%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAK--YGNKWI---RTRTILDTLDPRWNEQYT 421
+ + I+ A+NL M +D Y Y +K + +T T L+P +NE +
Sbjct: 16 NSIIVNIIKARNLKAMDIG--GTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFA 73
Query: 422 WEVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDR 467
+++ T I I V D S++D IGK+ + + +
Sbjct: 74 FDIPTEKLRETTIIITVMD--KDKLSRNDV----IGKIYLSWKSGPGEV 116
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 6e-20
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKH-----LEKNQNPVWNQIFAF--S 94
L V V+KAR+LP DVSG DPYV+V L + K + N V+N++F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 95 KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVP--------PDSPLAPQWYRL 145
E L+ VE V D + +++ +GR+ P +A +W+ L
Sbjct: 92 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KWHML 150
Query: 146 ED 147
D
Sbjct: 151 CD 152
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-09
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 17/128 (13%)
Query: 197 FSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLVRVTRPSHVR--SVNPVWNE 252
+ L V V +A+ L S+ D YVK+ L + +HV+ + N V+NE
Sbjct: 25 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNE 84
Query: 253 EHMFVASEPFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQ--RH-----ETTKL 301
+F P E L + V D ++E++GR + H + +
Sbjct: 85 LFVF--DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR 142
Query: 302 PDPRWFNL 309
+W L
Sbjct: 143 QIAKWHML 150
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 8e-04
Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAK--YGNKWI---RTRTILDTLDPRWNEQYT 421
L + +L A++L L+D Y + K I +T T + +NE +
Sbjct: 30 NTLTVVVLKARHLPKSDVS--GLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFV 87
Query: 422 WEV---YDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLST 462
+++ + V D GS+++ IG++ + +
Sbjct: 88 FDIPCESLEEISVEFLVLD--SERGSRNEV----IGRLVLGATA 125
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 7e-19
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 15/123 (12%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL------GNYKGIAKHLEKNQNP 85
YD + + +++ NL + + V + + L+ +
Sbjct: 37 KYDEKNKQ--FAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTL 94
Query: 86 VWNQIFAF--SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQW 142
V+N++F S L + V V D ++ +G L E V + +W
Sbjct: 95 VFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAE----VCRSGERSTRW 150
Query: 143 YRL 145
Y L
Sbjct: 151 YNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 5e-09
Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 17/126 (13%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL------GNLVRVTRPSHVRSVN 247
+ + K + + + +L + + +++ + + TRP S
Sbjct: 35 ALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRP-LDASDT 93
Query: 248 PVWNEEHMFVASEPFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPD 303
V+NE +F S + L + V V +E LG I + V + E +
Sbjct: 94 LVFNE--VFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERS---- 147
Query: 304 PRWFNL 309
RW+NL
Sbjct: 148 TRWYNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 6e-06
Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 18/120 (15%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYC------VAKYGNKWIRTRTILDTLDPRWNEQY 420
+ I+ NL + + ++ RTR + + +NE +
Sbjct: 43 KQFAILIIQLSNLSALLQQQD--QKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVF 100
Query: 421 TWEVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLE-TDRLYTHYYPLL 476
+ + + V ++ +G +I L+ + + T +Y LL
Sbjct: 101 WVSMSYPALHQKTLRVDVCTTDR--SHLEEC----LGGAQISLAEVCRSGERSTRWYNLL 154
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 9e-19
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPV 86
YD + L +++A+ L MD +G DPYV++ L + K K L +NPV
Sbjct: 23 LYD--QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPV 80
Query: 87 WNQIFAF---SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQW 142
WN+ + ++E +Q + ++V D+D G ++F+G F L ++ +
Sbjct: 81 WNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKN-----FN 135
Query: 143 YRLE 146
LE
Sbjct: 136 ICLE 139
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-09
Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 18/128 (14%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL--GNLVRVTRPSHV--RSVNPV 249
+ + L+ + A+ L P + D YVK+ L G + + NPV
Sbjct: 21 SLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPV 80
Query: 250 WNEEHMFVASEPFEDL----IIVTV--EDRIGPGKDEILGREFIPVRNVPQRHETTKLPD 303
WNE + ED+ + ++V ED+ G +E +G ++ +
Sbjct: 81 WNETLQYHGI-TEEDMQRKTLRISVCDEDKF--GHNEFIGETRFSLKKLKANQRKNF--- 134
Query: 304 PRWFNLHK 311
L +
Sbjct: 135 --NICLER 140
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-08
Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 19/119 (15%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCV------AKYGNKWIRTRTILDTLDPRWNEQY 420
L+ I+ AK L PM S L D Y A NK RT+T+ +T +P WNE
Sbjct: 29 SNLQCTIIRAKGLKPMDS--NGLADPYVKLHLLPGASKSNKL-RTKTLRNTRNPVWNETL 85
Query: 421 TWEVYDPC----TVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475
+ + I V D ++ IG+ R L L+ ++ L
Sbjct: 86 QYHGITEEDMQRKTLRISVCD--EDKFGHNE----FIGETRFSLKKLKANQRKNFNICL 138
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 5e-18
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSL-DPYVEVKLGNYKGIA---KHLEKNQNPVW 87
Y+ + VN+ +AR LP MD DPY+++ + K + L K +P +
Sbjct: 16 EYN--FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAF 73
Query: 88 NQIFAF---SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVP 129
++ F F ++Q + T+ D +DD +G V L +
Sbjct: 74 DETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 6e-08
Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 16/128 (12%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVP-SEEGRAPDAYVKIQLGNLVRVTRPSHV--RSVNPVW 250
+ ++ + V + EA+ L E+ D Y+K+ + + + V ++++P +
Sbjct: 14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAF 73
Query: 251 NEEHMFVASEPFEDL----IIVTV--EDRIGPGKDEILGREFIPVRNVPQRHETTKLPDP 304
+E F P+ + + T+ DR +D+I+G IP+ + +
Sbjct: 74 DETFTFYGI-PYTQIQELALHFTILSFDRF--SRDDIIGEVLIPLSGIELSEGKMLM--- 127
Query: 305 RWFNLHKP 312
+
Sbjct: 128 -NREIISG 134
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 14/108 (12%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAK---YGNKWIRTRTILDTLDPRWNEQYTWE 423
+ I A+ L M + +D Y ++TR + TLDP ++E +T+
Sbjct: 22 KAFVVNIKEARGLPAMDEQ-SMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80
Query: 424 VYDPCTV----ITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDR 467
+ + + S+DD IG+V I LS +E
Sbjct: 81 GIPYTQIQELALHFTILS--FDRFSRDDI----IGEVLIPLSGIELSE 122
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 7e-18
Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 17/125 (13%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKH----LEKNQNPVW 87
YD Q LFV ++A + G D YV+ + N G + ++ + W
Sbjct: 20 DYD--CQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTW 74
Query: 88 NQIFAF--SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYR 144
+ ++E L + + +T++ D + G + L + QW
Sbjct: 75 EEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA-----QWGE 129
Query: 145 LEDRK 149
L+
Sbjct: 130 LKTSG 134
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-07
Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 23/133 (17%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL----GNLVRVTRPSHVRSVNPV 249
+ + + L V EA D YV+ + G++ T R ++
Sbjct: 18 CLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTA-LKKRQLHTT 73
Query: 250 WNEEHMFVASEPFEDL----IIVTV--EDRIGPGKDEILGREFIPVRNVPQRHETTKLPD 303
W E V E+L + +T+ DR + + G + +
Sbjct: 74 WEEG--LVLPLAEEELPTATLTLTLRTCDRF--SRHSVAGELRLGLDGTSVPLGAA---- 125
Query: 304 PRWFNLHKPSLSA 316
+W L S+
Sbjct: 126 -QWGELKTSGPSS 137
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 18/116 (15%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAK----YGNKWIRTRTILDTLDPRWNEQYTW 422
L + L A D Y G+ +T L W E
Sbjct: 26 AELFVTRLEAVTSNH-----DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVL 80
Query: 423 EVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475
+ + P +T+ + S+ G++R+ L + L
Sbjct: 81 PLAEEELPTATLTLTLRT--CDRFSRHSV----AGELRLGLDGTSVPLGAAQWGEL 130
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 8e-18
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 38 QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIA-----KHLEKNQNPVWNQIFA 92
+ LF+ V+ ++L D + +PYV+ L K K +NP +N++
Sbjct: 18 RNGTLFIMVMHIKDLVTEDGADP-NPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLV 76
Query: 93 F---SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDR 148
+ SKE L+ ++++V + + ++ F+G +T L +WY+L
Sbjct: 77 YSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPL----KDFNLSKET-VKWYQLTAA 131
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 6e-08
Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 22/121 (18%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYC-------VAKYGNKWIRTRTILDTLDPRWNEQ 419
G L + ++ K+L+ DG + Y K + +T+ T +P +NE
Sbjct: 20 GTLFIMVMHIKDLVTE---DGADPNPYVKTYLLPDTHKTSKR--KTKISRKTRNPTFNEM 74
Query: 420 YTWEVYDPCTVIT----IGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475
+ Y T+ + V + ++ +G + + L + +Y L
Sbjct: 75 LVYSGYSKETLRQRELQLSVLS--AESLRENFF----LGGITLPLKDFNLSKETVKWYQL 128
Query: 476 L 476
Sbjct: 129 T 129
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 6e-08
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 17/119 (14%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQL-----GNLVRVTRPSHVRSVNPVWNEEHMFVA 258
L + V +DLV + P+ YVK L R T+ ++ NP +NE ++
Sbjct: 22 LFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTK-ISRKTRNPTFNEMLVYSG 79
Query: 259 SEPFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPS 313
E L + ++V ++ LG +P+++ ET +W+ L +
Sbjct: 80 Y-SKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETV-----KWYQLTAAT 132
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 1e-17
Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL-GNYKGIAKH----LEKNQNPV 86
S D Q L +++++ + L G+ DPYV++ L + + ++P
Sbjct: 21 SID--AQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPA 77
Query: 87 WNQIFAFS-KERLQSNLVEVTVKDKDI--GKDDFVGRVTFDLFEVPHRVPPDSPLAPQWY 143
+++ F F +E + VTV ++ + +G ++F + + PD ++ WY
Sbjct: 78 FHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLT---PDKEIS-GWY 133
Query: 144 RLEDRK 149
L
Sbjct: 134 YLLGEH 139
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 8e-10
Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 24/149 (16%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL-----GNLVRVTRPSHVRSVNP 248
++ + L + + E + L+ + G D YVKI L + T+ +P
Sbjct: 19 RLSIDAQDRVLLLHIIEGKGLISKQPGT-CDPYVKISLIPEDSRLRHQKTQT-VPDCRDP 76
Query: 249 VWNEEHMFVASEPFEDL---IIVTV--EDRIGPGKDEILGREFIPVRNVPQRHETTKLPD 303
++E F ED ++VTV + ++G V+++ +
Sbjct: 77 AFHE--HFFFPVQEEDDQKRLLVTVWNRASQS-RQSGLIGCMSFGVKSLLTPDKEI---- 129
Query: 304 PRWFNLHKPSLSAEEGAEKKKEKFSSKIL 332
W+ L L G K K + + L
Sbjct: 130 SGWYYL----LGEHLG-RTKHLKVARRRL 153
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 5e-08
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 20/120 (16%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYC-------VAKYGNKWIRTRTILDTLDPRWNEQ 419
+L L I+ K L+ D Y ++ ++ +T+T+ D DP ++E
Sbjct: 27 RVLLLHIIEGKGLISK---QPGTCDPYVKISLIPEDSRLRHQ--KTQTVPDCRDPAFHEH 81
Query: 420 YTWEV--YDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLET-DRLYTHYYPLL 476
+ + V D + + V++ + S+ + IG + + +L T D+ + +Y LL
Sbjct: 82 FFFPVQEEDDQKRLLVTVWN--RASQSRQSGL---IGCMSFGVKSLLTPDKEISGWYYLL 136
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 3e-17
Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 18/131 (13%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPV 86
+ Q + L V V RNL GS DPYV + L + + +K NPV
Sbjct: 18 RHS--SQRNKLIVVVHACRNLIAFSEDGS-DPYVRMYLLPDKRRSGRRKTHVSKKTLNPV 74
Query: 87 WNQIFAF--SKERLQSNLVEVTVKDKD-IGKDD--FVGRVTFDLFEVPHRVPPDSPLAPQ 141
++Q F F S +Q ++V VK+ D +G+V L Q
Sbjct: 75 FDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKG-----WTQ 129
Query: 142 WYRLEDRKGDK 152
WY L + G
Sbjct: 130 WYDLTEDSGPS 140
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 7e-09
Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 20/135 (14%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL-----GNLVRVTRPSHVRSVNP 248
+ S + L V V ++L+ E D YV++ L + R T +++NP
Sbjct: 16 TIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTH-VSKKTLNP 73
Query: 249 VWNEEHMFVASEPFEDL----IIVTV--EDRIGPGKDEILGREFIPVRNVPQRHETTKLP 302
V+++ F S ++ + V V +LG+ + + + T
Sbjct: 74 VFDQ--SFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWT--- 128
Query: 303 DPRWFNLHKPSLSAE 317
+W++L + S +
Sbjct: 129 --QWYDLTEDSGPSS 141
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-07
Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 19/120 (15%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYC-------VAKYGNKWIRTRTILDTLDPRWNEQ 419
L + + + +NL+ +D Y + G + +T TL+P +++
Sbjct: 24 NKLIVVVHACRNLIAF---SEDGSDPYVRMYLLPDKRRSGRR--KTHVSKKTLNPVFDQS 78
Query: 420 YTWEVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476
+ + V + + V + D +GKV + L++ E + +T +Y L
Sbjct: 79 FDFSVSLPEVQRRTLDVAVKN--SGGFLSKD--KGLLGKVLVALASEELAKGWTQWYDLT 134
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 3e-17
Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 16/126 (12%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSL-DPYVEVKLG-NYKGIAKH----LEKNQNP 85
Y+ +Q L V+V + L D + +PYV+ L + K NP
Sbjct: 17 KYE--QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNP 74
Query: 86 VWNQIFAF--SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQW 142
++++ + + L ++ +V G++ F+G + D L
Sbjct: 75 LYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDS----WKLDKKL-DHC 129
Query: 143 YRLEDR 148
L +
Sbjct: 130 LPLHGK 135
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-10
Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 18/136 (13%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGR-APDAYVKIQL-----GNLVRVTRPSHVRSVN 247
+ + + L V V E L ++E + + YVK L R T +VN
Sbjct: 15 SLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTS-IKRDTVN 73
Query: 248 PVWNEEHMFVASEPFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPD 303
P+++E P L + +V G++ LG I + + +
Sbjct: 74 PLYDE--TLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKL----- 126
Query: 304 PRWFNLHKPSLSAEEG 319
LH + EG
Sbjct: 127 DHCLPLHGKISAESEG 142
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 6e-08
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 25/136 (18%)
Query: 367 GILELGILSAKNLMPMTSKDGK---------LTDAYCVAKYGNKWIRTRTILDTLDPRWN 417
L + + L + L D K +T DT++P ++
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKR-----KTSIKRDTVNPLYD 77
Query: 418 EQYTWEVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYP 474
E +E+ + + V+ H ++ +G+ I++ + + D+ H P
Sbjct: 78 ETLRYEIPESLLAQRTLQFSVWH--HGRFGRNTF----LGEAEIQMDSWKLDKKLDHCLP 131
Query: 475 LLVLTPSGLKKNGELH 490
L + G H
Sbjct: 132 L--HGKISAESEGHHH 145
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 4e-17
Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 10/129 (7%)
Query: 38 QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAK--HLEKNQNPVWNQIFAFSK 95
+ + + V+ A+NL D DP+ ++ + ++ +P WNQ +
Sbjct: 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV 62
Query: 96 ERLQSNLVEVTVKDKD-IGKDD---FVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD 151
+ S + ++V + I K F+G V + D+ +
Sbjct: 63 GKTDS--ITISVWNHKKIHKKQGAGFLGCVRLLSNAISR--LKDTGYQRLDLCKLNPSDT 118
Query: 152 KITQGEIML 160
+G+I++
Sbjct: 119 DAVRGQIVV 127
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 2e-15
Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 10/131 (7%)
Query: 369 LELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKW--IRTRTILDTLDPRWNEQYTWEVYD 426
+ L +L AKNL D + T T+ +TLDP+WN+ Y V
Sbjct: 7 IRLTVLCAKNLAKK-DFFRL-PDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK 64
Query: 427 PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTL--ETDRLYTHYYPLLVLTPSGLK 484
+ ITI V++ H K +G VR+ + + D Y +
Sbjct: 65 TDS-ITISVWN--HKKIHKKQGAG-FLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDA 120
Query: 485 KNGELHLALRF 495
G++ ++L+
Sbjct: 121 VRGQIVVSLQT 131
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 3e-12
Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 11/135 (8%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVR-SVNPVWNEEHMFVASEPF 262
+R+ V A++L + R PD + KI + + V+ +++P WN+ +
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQH--YDLYVGK 64
Query: 263 EDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEK 322
D I ++V + K + G F+ + ++L D + L L+
Sbjct: 65 TDSITISVWNHKKIHKKQGAG--FLGCVRLLSN-AISRLKDTGYQRLDLCKLN-----PS 116
Query: 323 KKEKFSSKILIRFCL 337
+ +I++
Sbjct: 117 DTDAVRGQIVVSLQT 131
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 1e-16
Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 20/131 (15%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVM-------DVSGSLDPYVEVKLGNYKGIA---KHLEK 81
YDL+ L V V++AR+LP +PYV++ L + + K
Sbjct: 20 QYDLLHNH--LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRK 77
Query: 82 NQNPVWNQIFAF--SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPL 138
Q PV+ + + F Q + +TV D D + +G+V+ L EV
Sbjct: 78 TQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDL-----VKG 132
Query: 139 APQWYRLEDRK 149
W L
Sbjct: 133 GHWWKALIPSG 143
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-08
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 26/139 (18%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVP-------SEEGRAPDAYVKIQL---GNLVRVTRPSHV 243
+ +L V V EA+DL P ++ + YVKI L + T
Sbjct: 18 STQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTG-VKR 76
Query: 244 RSVNPVWNEEHMFVASEPFEDL----IIVTV--EDRIGPGKDEILGREFIPVRNVPQRHE 297
++ PV+ E + PF + +++TV D+ + ++G+ +P+ V
Sbjct: 77 KTQKPVFEE--RYTFEIPFLEAQRRTLLLTVVDFDKF--SRHCVIGKVSVPLCEVDLVKG 132
Query: 298 TTKLPDPRWFNLHKPSLSA 316
W L S+
Sbjct: 133 GH-----WWKALIPSGPSS 146
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 19/121 (15%)
Query: 367 GILELGILSAKNLMPMTSK-----DGKLTDAYCVAKY----GNKWIRTRTILDTLDPRWN 417
L + ++ A++L P S D ++ Y N +T T P +
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSK-QTGVKRKTQKPVFE 84
Query: 418 EQYTWEVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYP 474
E+YT+E+ + + V D S+ IGKV + L ++ + +
Sbjct: 85 ERYTFEIPFLEAQRRTLLLTVVD--FDKFSRHCV----IGKVSVPLCEVDLVKGGHWWKA 138
Query: 475 L 475
L
Sbjct: 139 L 139
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 4e-16
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 35 LVEQMHYLFVNVVKARNLPVMDVSGSL-DPYVEVKLG-NYKGIAKH----LEKNQNPVWN 88
+ ++ L V V++AR+L S S PYV+V L N IAK K +P++
Sbjct: 25 MEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQ 84
Query: 89 QIFAFSKERLQSNLVEVTVK-DKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146
Q F E Q +++V V D + F+G L + S + WY+L
Sbjct: 85 QSLVF-DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILL----EELDLSSMV-IGWYKLF 138
Query: 147 DR 148
Sbjct: 139 PP 140
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 3e-09
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 13/138 (9%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAK--YGNKWI---RTRTILDTLDPRWNEQYT 421
G LE+ ++ A++L Y I +TR TLDP + +
Sbjct: 30 GQLEVEVIRARSLTQKPGSKS-TPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88
Query: 422 WEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPS 481
++ V+ + V+ + + +G +I L L+ + +Y L PS
Sbjct: 89 FDESPQGKVLQVIVWGD-YGRMDHKCF----MGVAQILLEELDLSSMVIGWYKL--FPPS 141
Query: 482 GLKKNGELHLALRFTCTA 499
L L R + ++
Sbjct: 142 SLVDPTLAPLTRRASQSS 159
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 2e-08
Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 14/132 (10%)
Query: 204 LRVFVFEAQDLVPSEEGR-APDAYVKIQL--GNLVRVTRPSHV--RSVNPVWNEEHMFVA 258
L V V A+ L + P YVK+ L + + + ++++P++ + V
Sbjct: 32 LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQ--SLVF 89
Query: 259 SEPFED--LIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSA 316
E + L ++ D +G I + + W+ L PS
Sbjct: 90 DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVI-----GWYKLFPPSSLV 144
Query: 317 EEGAEKKKEKFS 328
+ + S
Sbjct: 145 DPTLAPLTRRAS 156
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 71.9 bits (175), Expect = 3e-13
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 38 QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKER 97
+ +L V+ +A +L + + D Y++V G + + N NP W F
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTTAT-DAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVL 450
Query: 98 L-QSNLVEVTVKDKDIG-KDDFVGRVTFDL 125
L + V V D D G DD +G
Sbjct: 451 LSTGGPLRVQVWDADYGWDDDLLGSCDRSP 480
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 61.1 bits (147), Expect = 9e-10
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 24/127 (18%)
Query: 373 ILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYD--PCTV 430
A++L TDAY +G + RT + + +PRW ++ +E
Sbjct: 400 NFRAEHLW---GDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGP 456
Query: 431 ITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELH 490
+ + V+D G DD +G + + L +G +
Sbjct: 457 LRVQVWD--ADYGWDDD----LLGSCDRSPHSGFHE----VTCEL---------NHGRVK 497
Query: 491 LALRFTC 497
+ C
Sbjct: 498 FSYHAKC 504
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 1e-04
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 196 YFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHM 255
L +L V F A+ L + A DAY+K+ G T + NP W ++
Sbjct: 388 PRQRGLAHLVVSNFRAEHL-WGDYTTATDAYLKVFFGGQEFRTGVVW-NNNNPRWTDKMD 445
Query: 256 F-VASEPFEDLIIVTVEDRIGPGKDEILGR 284
F + V V D D++LG
Sbjct: 446 FENVLLSTGGPLRVQVWDADYGWDDDLLGS 475
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 2e-09
Identities = 96/619 (15%), Positives = 176/619 (28%), Gaps = 182/619 (29%)
Query: 104 EVTVKDKDI---GKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQ----- 155
E + KDI +D FV FD +V D P + L + D I
Sbjct: 13 EHQYQYKDILSVFEDAFVD--NFDCKDVQ-----DMPKSI----LSKEEIDHIIMSKDAV 61
Query: 156 GEIMLAVWIGTQADESFSEAWHSDAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLV 215
+ W E + + + I+ L + I P + R+++ E +D
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-RMYI-EQRD-- 117
Query: 216 PSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWN-EEHMF-VASEPFEDLIIVTVEDR 273
+L N +V +V + P + + + V ++
Sbjct: 118 --------------RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-----VLIDGV 158
Query: 274 IGPGKDEILGREFIPVRNVPQRHETTKLPDPR--WFNLHKPSLSAEEGAEKKKEKFSSKI 331
+G GK + +V ++ D + W NL E +
Sbjct: 159 LGSGK-TWV------ALDVCLSYKVQCKMDFKIFWLNL---------KNCNSPET----V 198
Query: 332 LIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLTD 391
L L+ + +D + SD S++ LR SI +L
Sbjct: 199 LEM--LQKLLYQIDPNWTSRSD-HSSNIKLRIHSI-------------------QAELRR 236
Query: 392 AYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP-C-TVIT---IGVFDNCHVNGSKD 446
Y N + +L + N + W ++ C ++T V D +
Sbjct: 237 LLKSKPYENCLL----VLLNV---QNAK-AWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 447 DAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTCTAWVSMVTK 506
++D + L+ E L Y L P L L
Sbjct: 289 ISLD----HHSMTLTPDEVKSLLLKY---LDCRPQDLP-----REVLT------------ 324
Query: 507 YGMPLLPKMHYVQPIPVIL------IDRLRH----QAMQIVAARLGRAEPPLRREVVEYM 556
P + I + D +H + I+ + L EP R++ + +
Sbjct: 325 -TNPRRLSI-----IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 557 --LDVDYH--------MWSLRKSKANFQRIMELF---SAICRWFNDICTWRNPVETVLLH 603
H +W K++ ++ S + + + T+ +
Sbjct: 379 SVFPPSAHIPTILLSLIWF-DVIKSDVMVVVNKLHKYSLVEKQPKE--------STISIP 429
Query: 604 VLFLILVFYPELILPTIFLYLFLIGMWNYRFRPRH------PPQVDAKLSQAINAHLDEL 657
++L L E L+ ++ +Y PP +D I HL +
Sbjct: 430 SIYLELKVKLENEYA---LHRSIVD--HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 658 VKEFDTSDELDEEFDSFPT 676
E E F
Sbjct: 485 --------EHPERMTLFRM 495
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 7e-07
Identities = 89/678 (13%), Positives = 181/678 (26%), Gaps = 223/678 (32%)
Query: 17 LAARLRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIA 76
L + ++ + + +EQ L+ + +VS L PY++++
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV---FAKYNVS-RLQPYLKLRQA-----L 144
Query: 77 KHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDS 136
L +N + + + K + + + + ++ F
Sbjct: 145 LELRPAKNVLIDGVLGSGK----TWVALDVCLSYKV-QCKMDFKI-F------------- 185
Query: 137 PLAPQWYRLEDRKGDKITQGEIMLAVW-IGTQADESFSEAWHSDAHNISQTNLANTISKV 195
W L + + ++ + + Q D +++ ++ + + +
Sbjct: 186 -----WLNL----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 196 YFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHM 255
K Y + LV + V N +
Sbjct: 237 LLKSKPY--------------------ENCL-------LV----------LLNVQNAKAW 259
Query: 256 FVASEPFEDL---IIVT-----VEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWF 307
F +L I++T V D + ++ H
Sbjct: 260 ----NAF-NLSCKILLTTRFKQVTDFLSAAT----------TTHISLDH----------- 293
Query: 308 NLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIG 367
H +L+ +E K + R DL P + +
Sbjct: 294 --HSMTLTPDEV----KSLLLKYLDCRP----------------QDL-PREVL----TTN 326
Query: 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTI---LDTLDPRWNEQYTWE 423
L I++ +DG T D + K+ N T I L+ L+P E +
Sbjct: 327 PRRLSIIAES------IRDGLATWDNW---KHVNCDKLTTIIESSLNVLEP--AEYR--K 373
Query: 424 VYDPCTV------ITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRL-YTHYYPLL 476
++D +V I + + K D + + S +E T P
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSD--VMVVVNKLHKYSLVEKQPKESTISIP-- 429
Query: 477 VLTPSGLKKNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVILIDRLRHQAMQI 536
++L L+ +H ++D I
Sbjct: 430 -----------SIYLELKVKL------------ENEYALH------RSIVDHYN-----I 455
Query: 537 VAARLGRAEPPLRREVVEYMLD-VDYHMWSLRKSKANFQRIMELFSAI---CRWF----- 587
P + +Y + +H+ M LF + R+
Sbjct: 456 PKTFDSDDLIPPYLD--QYFYSHIGHHL-----KNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 588 NDICTWRNPVETVLLHVLFLILVFYPELILPTIFLYLFLIGMWNYRFRPRHPPQV----D 643
+D W +L+ L L FY I Y L+ F P+ +
Sbjct: 509 HDSTAWNASGS--ILNTL-QQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKY 564
Query: 644 AKLSQ-AINAHLDELVKE 660
L + A+ A + + +E
Sbjct: 565 TDLLRIALMAEDEAIFEE 582
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-07
Identities = 17/125 (13%), Positives = 42/125 (33%), Gaps = 15/125 (12%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPV-WNQIFAFSKER--L 98
L V++ L G D +V ++ LE ++ +++ F +
Sbjct: 23 LIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSID 77
Query: 99 QSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGE 157
++ ++E+ + + + + +G L +V L D I +
Sbjct: 78 RNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVE-----ENRVEVSDTLIDDNN-AIIKTS 131
Query: 158 IMLAV 162
+ + V
Sbjct: 132 LSMEV 136
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 53.1 bits (126), Expect = 3e-07
Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 18/182 (9%)
Query: 31 SSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYK----GIAKHLEKNQNPV 86
+ + + L + +++AR LP Y E+ L +
Sbjct: 2 NKDNSRRVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVF 56
Query: 87 WNQIFAFSKERLQSNLVEVTVKDKD----IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQW 142
W + F F+ L +D D K +VG VT + + R + QW
Sbjct: 57 WGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTE-----QW 111
Query: 143 YRLEDRKGDKITQGEIMLAVWIGTQADESFSEAWHSDAHNISQTNLANTISKVYFSPKLY 202
Y + G + G + ++ + + +
Sbjct: 112 YPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAE 171
Query: 203 YL 204
Y+
Sbjct: 172 YV 173
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 50.4 bits (119), Expect = 2e-06
Identities = 31/194 (15%), Positives = 59/194 (30%), Gaps = 19/194 (9%)
Query: 369 LELGILSAKNLMPMTSKDGKLTDAYC-VAKYGNKWIRTRT---ILDTLDPRWNEQYTWEV 424
L+L I+ A+ L P YC + + RT + W E + +
Sbjct: 13 LKLWIIEARELPPKK-------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNN 65
Query: 425 YDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLK 484
+ + ++ + KD +G V + ++TL +YP+ + T SG
Sbjct: 66 LPAVRALRLHLYRDSDKKRKKDK--AGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSG-G 122
Query: 485 KNGELHLALRFTCTAWVSMVTKYGMPLLPKMHYVQPIPVIL-----IDRLRHQAMQIVAA 539
G + + K Y + + +++ A
Sbjct: 123 SGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYVTNHYRMLCA 182
Query: 540 RLGRAEPPLRREVV 553
L A +E V
Sbjct: 183 VLEPALNVKGKEEV 196
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 47.7 bits (112), Expect = 1e-05
Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 16/134 (11%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSV---NPVWNEEHMFVASE 260
L++++ EA++L P Y ++ L +++ S RS W E F
Sbjct: 13 LKLWIIEARELPP-----KKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67
Query: 261 PFEDLIIVTVED---RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAE 317
L + D + K +G +PV + RH T + W+ + P+ S
Sbjct: 68 AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQ-----WYPVTLPTGSGG 122
Query: 318 EGAEKKKEKFSSKI 331
G S
Sbjct: 123 SGGMGSGGGGGSGG 136
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSN 101
L V+V++A L +G +PY E+ +G+ + ++ NP WN F + L +
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQD 448
Query: 102 LVEVTVKDKDI-GKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIML 160
++ +T+ D+D DDF+GR + ++ P+ + E G+ + ++ L
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQL 508
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 40/211 (18%), Positives = 80/211 (37%), Gaps = 15/211 (7%)
Query: 284 REFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHV 343
+ I + V + T D F++ + E+ + I+ E
Sbjct: 308 KTPIFLNEVLVKLPTDPSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQ---- 363
Query: 344 LDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWI 403
++ + + S + IG L + ++ A L +GK ++ YC G++
Sbjct: 364 YIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATEL-KACKPNGK-SNPYCEISMGSQSY 421
Query: 404 RTRTILDTLDPRWNEQYTWEVYDPC-TVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLST 462
TRTI DTL+P+WN + + D V+ + +FD + D +G+ I ++
Sbjct: 422 TTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFD------RDQFSPDDFLGRTEIPVAK 475
Query: 463 LETDRLYTHYYPLLVLTPSGLKKNGELHLAL 493
+ T++ P+ GE+ +
Sbjct: 476 IRTEQ--ESKGPMTRRLLLHEVPTGEVWVRF 504
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 782 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 100.0 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.97 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.83 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.82 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.82 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.81 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.81 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.8 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.8 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.8 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.8 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.8 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.79 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.79 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.79 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.79 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.78 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.78 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.78 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.78 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.78 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.78 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.77 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.77 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.77 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.77 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.76 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.76 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.76 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.76 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.76 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.75 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.75 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.75 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.74 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.74 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.74 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.74 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.74 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.73 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.73 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.73 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.73 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.72 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.72 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.72 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.72 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.72 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.71 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.71 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.71 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.71 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.7 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.7 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.7 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.7 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.7 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.69 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.69 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.69 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.69 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.68 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.68 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.67 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.67 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.67 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.66 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.64 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.63 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.61 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.61 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.59 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.58 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.57 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.56 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.55 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.54 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.54 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.53 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.46 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.45 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.44 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.3 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.28 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.21 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.21 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.19 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.16 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.07 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.05 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.02 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.0 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.85 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.8 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.78 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.76 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 92.37 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 86.14 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 85.44 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 84.84 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 82.4 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 81.36 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=295.70 Aligned_cols=248 Identities=27% Similarity=0.403 Sum_probs=206.3
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEecc--C
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~~--~ 98 (782)
.|...+++.|+. ..+.|.|+|++|+||+.+|..|.+||||++++++ ++++|+++++|+||+|||+|.|.+.. .
T Consensus 5 ~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~ 82 (284)
T 2r83_A 5 LGKLQYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 82 (284)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGC
T ss_pred eeEEEEEEEEEC--CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHh
Confidence 577889999987 5679999999999999999899999999999964 47899999999999999999999753 3
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-cccceEEEEEEEEcccCCccccccc
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD-KITQGEIMLAVWIGTQADESFSEAW 176 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~~~~~d~~~~~~~ 176 (782)
....|.|+|||++.+ +|++||++.++|.++..+. ...+|++|....+. ....|+|.+++.+.
T Consensus 83 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~G~i~l~l~~~----------- 146 (284)
T 2r83_A 83 AGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSAEKEEQEKLGDICFSLRYV----------- 146 (284)
T ss_dssp TTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSS-----CEEEEEECBCCSSCCCCCCCEEEEEEEEE-----------
T ss_pred CcCEEEEEEEECCCCCCCceeEEEEEcchhcccCC-----cceeEEEeeccccccccccccEEEEEEec-----------
Confidence 467999999999998 8999999999999997753 26799999876532 22249999988664
Q ss_pred cccccccccccccccccccccCCceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eeeecccccCCCCCCccc
Q 045512 177 HSDAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLG--N---LVRVTRPSHVRSVNPVWN 251 (782)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg--~---~~~kT~~~~~~t~nP~wn 251 (782)
|..+.|.|.|++|++|+.++..+.+||||++.+. + ...+|+++++ +.||.||
T Consensus 147 ----------------------p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wn 203 (284)
T 2r83_A 147 ----------------------PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYN 203 (284)
T ss_dssp ----------------------TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEE
T ss_pred ----------------------CcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecC-CCCCEEc
Confidence 2234699999999999999999999999999985 2 4678998886 9999999
Q ss_pred ceeEEEecCCC--CCeEEEEEEEccCCCCCceeEEEEEeCCCccccc-------CCCCCCCCeeEEccCC
Q 045512 252 EEHMFVASEPF--EDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRH-------ETTKLPDPRWFNLHKP 312 (782)
Q Consensus 252 e~f~f~v~~~~--~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~-------~~~~~~~~~w~~L~~~ 312 (782)
|.|.|.+.... ...|.|+|||++..+++++||++.++++.+.... ...+....+||+|.+.
T Consensus 204 e~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 204 ESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp EEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred eeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 99999986543 3469999999999999999999999998743210 0234456799999875
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=296.41 Aligned_cols=251 Identities=25% Similarity=0.342 Sum_probs=204.9
Q ss_pred ccCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeeeccccCCCCCeeccEEEEEecc--
Q 045512 23 YRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGIAKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~i~~t~nP~wne~f~f~~~~-- 97 (782)
..|...+++.|+. ..+.|.|+|++|++|+.+|..|.+||||++++ +.++++|+++++|+||+|||+|.|.+..
T Consensus 5 ~~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 82 (296)
T 1dqv_A 5 PCGRISFALRYLY--GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAE 82 (296)
T ss_dssp SSCEEEEEEECCS--SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred eeeEEEEEEEEeC--CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHH
Confidence 3688899999987 46799999999999999999999999999999 4578899999999999999999999753
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEE-ccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcccCCcccccc
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFD-LFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQADESFSEA 175 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~-l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~ 175 (782)
.....|.|+|||+|.+ ++++||++.++ +.++.... .....|++|....+.....|+|.+++.+..
T Consensus 83 l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~----~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~--------- 149 (296)
T 1dqv_A 83 LAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQP----PDRPLWRDILEGGSEKADLGELNFSLCYLP--------- 149 (296)
T ss_dssp GSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSC----SSCCCCEECBCCSSCCSCCCEEEEEEEEET---------
T ss_pred hcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCC----ccceeeeccccccccccccceEEEEEEecc---------
Confidence 3456899999999998 89999999996 54444321 125689999876544333599999987642
Q ss_pred ccccccccccccccccccccccCCceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eeeecccccCCCCCCcc
Q 045512 176 WHSDAHNISQTNLANTISKVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLG--N---LVRVTRPSHVRSVNPVW 250 (782)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg--~---~~~kT~~~~~~t~nP~w 250 (782)
..+.|+|+|++|++|+.++..|.+||||++.+. + .+++|+++++ +.||.|
T Consensus 150 ------------------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~w 204 (296)
T 1dqv_A 150 ------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTY 204 (296)
T ss_dssp ------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEE
T ss_pred ------------------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecC-CCCCeE
Confidence 234799999999999999999999999999996 2 5678999886 999999
Q ss_pred cceeEEEecCCC--CCeEEEEEEEccCCCCCceeEEEEEeCCCccc-cc-------CCCCCCCCeeEEccCCC
Q 045512 251 NEEHMFVASEPF--EDLIIVTVEDRIGPGKDEILGREFIPVRNVPQ-RH-------ETTKLPDPRWFNLHKPS 313 (782)
Q Consensus 251 ne~f~f~v~~~~--~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~-~~-------~~~~~~~~~w~~L~~~~ 313 (782)
||.|.|.+.... ...|.|+|||++..+++++||++.++++.+.. .. ...+....+|+.|....
T Consensus 205 ne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~~ 277 (296)
T 1dqv_A 205 NEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEK 277 (296)
T ss_dssp EECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBCC
T ss_pred CceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCcc
Confidence 999999886543 34799999999999999999999999987643 00 02344677888887764
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=280.08 Aligned_cols=229 Identities=24% Similarity=0.295 Sum_probs=189.0
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEEEEccCC
Q 045512 202 YYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN---LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDRIGP 276 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d~~ 276 (782)
+.|+|+|++|++|+.++..+.+||||++.+++ +.++|+++++ +.||.|||+|.|.+... ....|.|+|||++..
T Consensus 19 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~ 97 (284)
T 2r83_A 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRF 97 (284)
T ss_dssp TEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCS-CSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSS
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccC-CCCCeeCceEEEEechHHhCcCEEEEEEEECCCC
Confidence 46999999999999999999999999999963 5788999987 99999999999998643 356899999999999
Q ss_pred CCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccccccCCCCCCCCCCCCc
Q 045512 277 GKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDLQP 356 (782)
Q Consensus 277 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~ 356 (782)
+++++||++.++|.++... .....|++|..... ......|.+.+.+.+.
T Consensus 98 ~~~~~lG~~~i~l~~l~~~-----~~~~~w~~L~~~~~--------~~~~~~G~i~l~l~~~------------------ 146 (284)
T 2r83_A 98 SKHDIIGEFKVPMNTVDFG-----HVTEEWRDLQSAEK--------EEQEKLGDICFSLRYV------------------ 146 (284)
T ss_dssp SCCCEEEEEEEEGGGCCCS-----SCEEEEEECBCCSS--------CCCCCCCEEEEEEEEE------------------
T ss_pred CCCceeEEEEEcchhcccC-----CcceeEEEeecccc--------ccccccccEEEEEEec------------------
Confidence 9999999999999998742 24678999987531 0123458887776532
Q ss_pred cccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC--C---EEEeeccccCCCCCccccEEEEEEeCC---
Q 045512 357 SSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG--N---KWIRTRTILDTLDPRWNEQYTWEVYDP--- 427 (782)
Q Consensus 357 ~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~---~~~~T~~~~~t~nP~wne~~~f~v~~~--- 427 (782)
+..+.|.|.|++|+||++++. .|. ||||++++. + .+.+|+++++++||+|||.|.|.+...
T Consensus 147 -------p~~~~l~v~v~~a~~L~~~d~---~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 216 (284)
T 2r83_A 147 -------PTAGKLTVVILEAKNLKKMDV---GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQ 216 (284)
T ss_dssp -------TTTTEEEEEEEEEESCCCCST---TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGG
T ss_pred -------CcCCceEEEEEEeECCCCcCC---CCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhC
Confidence 345789999999999998753 366 999999984 3 468999999999999999999999754
Q ss_pred CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccc------------cCCcEEEEEEEceee
Q 045512 428 CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTL------------ETDRLYTHYYPLLVL 478 (782)
Q Consensus 428 ~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l------------~~~~~~~~~~~L~~~ 478 (782)
...|.|+|||++.++ +|++||++.|+++.+ ..+....+||+|...
T Consensus 217 ~~~l~i~V~d~d~~~------~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 217 KVQVVVTVLDYDKIG------KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp GEEEEEEEEECCSSS------CCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred ceEEEEEEEeCCCCC------CCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 347999999999876 899999999999863 245667899999753
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=281.22 Aligned_cols=229 Identities=21% Similarity=0.298 Sum_probs=185.6
Q ss_pred eEEEEEEEEEeeCCCCCCCCCCCCcEEEEEE---CCeeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEEEEccC
Q 045512 201 LYYLRVFVFEAQDLVPSEEGRAPDAYVKIQL---GNLVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDRIG 275 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d~ 275 (782)
.+.|+|+|++|++|+.+|..|.+||||++.+ +.+.++|+++++ +.||.|||+|.|.+... ....|.|+|||+|.
T Consensus 19 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~ 97 (296)
T 1dqv_A 19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR 97 (296)
T ss_dssp SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS
T ss_pred CCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCC-CCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCC
Confidence 3479999999999999999999999999999 467889999987 99999999999998543 24589999999999
Q ss_pred CCCCceeEEEEEe-CCCcccccCCCCCCCCeeEEccCCCCCcccccccccceecceEEEEEEeccccccCCCCCCCCCCC
Q 045512 276 PGKDEILGREFIP-VRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAEKKKEKFSSKILIRFCLEAGYHVLDESTHFSSDL 354 (782)
Q Consensus 276 ~~~d~~lG~~~i~-l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~l~l~v~~~~~~~~~~~~~~~~~d~ 354 (782)
++++++||++.++ +..+.. .......|+.|..... .....|.|.+.++..
T Consensus 98 ~~~~~~iG~~~i~~l~~~~~----~~~~~~~w~~L~~~~~---------~~~~~G~i~vsl~y~---------------- 148 (296)
T 1dqv_A 98 FSRHDLIGQVVLDNLLELAE----QPPDRPLWRDILEGGS---------EKADLGELNFSLCYL---------------- 148 (296)
T ss_dssp SSCCCEEEEEECCCTTGGGS----SCSSCCCCEECBCCSS---------CCSCCCEEEEEEEEE----------------
T ss_pred CCCCceEEEEEecccccccc----CCccceeeeccccccc---------cccccceEEEEEEec----------------
Confidence 9999999999996 444442 1224678999976531 123458888877542
Q ss_pred CccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC--C---EEEeeccccCCCCCccccEEEEEEeCC-
Q 045512 355 QPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG--N---KWIRTRTILDTLDPRWNEQYTWEVYDP- 427 (782)
Q Consensus 355 ~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~---~~~~T~~~~~t~nP~wne~~~f~v~~~- 427 (782)
+..|.|.|.|++|+||+++|. .|. ||||++++. + .++||+++++++||+|||.|.|.+...
T Consensus 149 ---------~~~~~l~v~v~~a~~L~~~d~---~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 216 (296)
T 1dqv_A 149 ---------PTAGLLTVTIIKASNLKAMDL---TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPES 216 (296)
T ss_dssp ---------TTTTEEEEEEEEEESCCCCSS---SSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGG
T ss_pred ---------cccceeEEEEEEeecCCccCC---CCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHH
Confidence 345899999999999998763 366 999999995 3 568999999999999999999998753
Q ss_pred --CceEEEEEEeCCCCCCCCCCcCCCccEEEEEeccccc-------------CCcEEEEEEEcee
Q 045512 428 --CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLE-------------TDRLYTHYYPLLV 477 (782)
Q Consensus 428 --~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~-------------~~~~~~~~~~L~~ 477 (782)
...|.|+|||++.++ +|++||.+.|+++.+. .++...+|++|..
T Consensus 217 l~~~~L~i~V~d~d~~~------~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~ 275 (296)
T 1dqv_A 217 VENVGLSIAVVDYDCIG------HNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 275 (296)
T ss_dssp GGSCCCCCEEEECCSSS------CCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBB
T ss_pred ccCcEEEEEEEeCCCCC------CCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccC
Confidence 347999999999876 8999999999999863 3445566777764
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-20 Score=171.14 Aligned_cols=124 Identities=32% Similarity=0.533 Sum_probs=109.3
Q ss_pred ecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCC
Q 045512 33 YDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI 112 (782)
Q Consensus 33 ~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~ 112 (782)
..+.++.+.|.|+|++|++|+.++..|.+||||++++++++++|+++++|+||+|||+|.|.+.+. ...|.|+|||++.
T Consensus 6 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~d~ 84 (133)
T 2ep6_A 6 SGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDG 84 (133)
T ss_dssp CCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEET
T ss_pred ccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEECCC
Confidence 445668899999999999999999899999999999999999999999999999999999999875 5789999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 113 G-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 113 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
. +|++||++.+++.++..+ ..+|++|....+.....|+|++++.+
T Consensus 85 ~~~~~~lG~~~i~l~~l~~~-------~~~w~~L~~~~~~~~~~G~i~l~i~~ 130 (133)
T 2ep6_A 85 DKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAFKGVIYLEMDL 130 (133)
T ss_dssp TEEEEECCBCEEEGGGCCSS-------CCEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred CCCCCeeEEEEEEHHHccCC-------CceEEEeecCCCCCccceEEEEEEEE
Confidence 9 899999999999999653 35899998776443334999999865
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-20 Score=170.22 Aligned_cols=123 Identities=25% Similarity=0.460 Sum_probs=107.9
Q ss_pred cCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCC
Q 045512 363 KGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHV 441 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~ 441 (782)
....|.|+|+|++|+||++++. .|. ||||+++++++++||+++++++||.|||.|.|.+.++...|.|+|||++.+
T Consensus 9 ~~~~~~L~v~v~~a~~L~~~d~---~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~ 85 (133)
T 2ep6_A 9 VKDVGILQVKVLKAADLLAADF---SGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD 85 (133)
T ss_dssp CCCSEEEEEEEEEEESCCCSSS---SSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred cCCceEEEEEEEeeECCCCCCC---CCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCC
Confidence 4567999999999999997753 366 999999999999999999999999999999999998888999999999986
Q ss_pred CCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEEE
Q 045512 442 NGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTC 497 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
+ +|++||++.|+|.++..+. .+||+|.....++ ...|+|+|+++|.+
T Consensus 86 ~------~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 86 K------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLIY 132 (133)
T ss_dssp E------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEEE
T ss_pred C------CCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEEEEEEEe
Confidence 5 7999999999999998776 6899998754433 45699999998843
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=167.47 Aligned_cols=123 Identities=27% Similarity=0.387 Sum_probs=107.4
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccC---CCCeEEEEEEeCCCC-
Q 045512 38 QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERL---QSNLVEVTVKDKDIG- 113 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~---~~~~L~v~V~d~d~~- 113 (782)
..+.|.|+|++|++|+.++. |.+||||++++++++++|+++++++||+|||+|.|.+... ....|.|+|||++.+
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~ 83 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG 83 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSS
T ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCC
Confidence 45799999999999999998 9999999999999999999999999999999999998643 358899999999998
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEE---eecCCCCcccceEEEEEEEEccc
Q 045512 114 KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYR---LEDRKGDKITQGEIMLAVWIGTQ 167 (782)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~---L~~~~~~~~~~G~l~l~~~~~~~ 167 (782)
+|++||++.+++.++..+.. ...|++ |.+..+.... |+|++++.|.+.
T Consensus 84 ~~~~lG~~~i~l~~l~~~~~-----~~~w~~l~~l~~~~~~~~~-G~l~l~~~~~p~ 134 (140)
T 2dmh_A 84 QNKLIGTATVALKDLTGDQS-----RSLPYKLISLLNEKGQDTG-ATIDLVIGYDPP 134 (140)
T ss_dssp SCCCCEEEEEEGGGTCSSSC-----EEEEEEEEEEECTTCCEEE-EEEEEEEEECCC
T ss_pred CCceEEEEEEEHHHhccCCC-----ceeEEeeeeccCCCCCCCC-CEEEEEEEEECC
Confidence 89999999999999976542 568988 7766665554 999999988753
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-19 Score=167.70 Aligned_cols=129 Identities=26% Similarity=0.374 Sum_probs=102.1
Q ss_pred cccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEe
Q 045512 36 VEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKD 109 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d 109 (782)
....+.|.|+|++|++|+.++..|.+||||++++++ ..++|+++++|+||+|||+|.|.+... ...|.|+|||
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d 94 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFD 94 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEE
Confidence 345679999999999999999889999999999974 578999999999999999999998764 5789999999
Q ss_pred CCCC-CCceeEEEEEEccccCCCCCCC-CCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 110 KDIG-KDDFVGRVTFDLFEVPHRVPPD-SPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 110 ~d~~-~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
++.. +|++||++.++|.++....... ..+..+||+|....+.....|+|++++.|.
T Consensus 95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 95 ENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL 152 (153)
T ss_dssp CCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred CCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence 9998 8999999999999998764321 234579999987653322349999999874
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=168.36 Aligned_cols=117 Identities=20% Similarity=0.272 Sum_probs=100.8
Q ss_pred CcceEEEEEEEEeeCCCCCCCCC-------CCCC-CcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKD-------GKLT-DAYCVAKYGNKW-IRTRTILDTLDPRWNEQYTWEVYDPCTVITIG 434 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~-------~~~~-dpyv~v~~~~~~-~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~ 434 (782)
...|.|+|+|++|+||+++|... ..|. ||||+++++++. .||+++++|+||+|||.|+|.+.+ ...|.|+
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~ 104 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELA 104 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEE
Confidence 56799999999999999876210 1255 999999999876 699999999999999999999976 3689999
Q ss_pred EEeCCCCCCCCCCcCCCccEEEEEecccccCC----cEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 435 VFDNCHVNGSKDDAIDQRIGKVRIRLSTLETD----RLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 435 V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|||++.++ +|++||++.|+|.++..+ ...+.||+|.. .|+|+|+++|
T Consensus 105 V~D~d~~~------~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--------~G~i~l~l~~ 155 (157)
T 2fk9_A 105 VFHETPLG------YDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--------EGKVFVVITL 155 (157)
T ss_dssp EEECCSSS------SCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--------SCEEEEEEEE
T ss_pred EEECCCCC------CCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--------CcEEEEEEEE
Confidence 99999876 899999999999999754 77899999952 5999999887
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=164.16 Aligned_cols=125 Identities=22% Similarity=0.342 Sum_probs=103.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC--
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVN-- 442 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~-- 442 (782)
.|.|+|+|++|+||++++. .|. ||||+++++++.++|+++++++||.|||.|.|.+..+...|.|+|||++...
T Consensus 16 ~~~L~V~v~~a~~L~~~d~---~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~ 92 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAKDK---TGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKS 92 (148)
T ss_dssp CEEEEEEEEEEESCCCCST---TSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHH
T ss_pred ccEEEEEEEeeeCCCCCCC---CCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccc
Confidence 5999999999999998754 366 9999999999999999999999999999999999988889999999999740
Q ss_pred ---CCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEE
Q 045512 443 ---GSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFT 496 (782)
Q Consensus 443 ---~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
...+.++|++||++.|+|.++. ....+||+|......+ ...|+|+|++.|+
T Consensus 93 ~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~-~~~G~i~l~l~~e 146 (148)
T 3kwu_A 93 RVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKS-AVSGAIRLHISVE 146 (148)
T ss_dssp HHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTC-CCCCEEEEEEEEE
T ss_pred cccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCCCC-CCceEEEEEEEEE
Confidence 0000127999999999999994 4558999998543322 3469999998874
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-19 Score=165.08 Aligned_cols=120 Identities=32% Similarity=0.527 Sum_probs=105.2
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC----
Q 045512 38 QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG---- 113 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~---- 113 (782)
..+.|.|+|++|++|+.+|..|.+||||++++++++++|+++++|+||+|||+|.|.+... ...|.|+|||++..
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~~~~ 93 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIKSR 93 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSHHHH
T ss_pred cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 4589999999999999999999999999999999999999999999999999999998765 47899999999973
Q ss_pred --------CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 114 --------KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 114 --------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
++++||++.+++.++... ..+||+|....+.....|+|++++.+.
T Consensus 94 ~~~~~~~~~~~~lG~~~i~l~~l~~~-------~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 94 VKQRFKRESDDFLGQTIIEVRTLSGE-------MDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHTTTSSCSSEEEEEEEEEGGGCCSE-------EEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred ccccccCCCCccEEEEEEEHHHCcCC-------CCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 899999999999999321 569999997654433349999999774
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.2e-19 Score=163.82 Aligned_cols=123 Identities=21% Similarity=0.310 Sum_probs=104.7
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC----CceEEEEEEeCC
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP----CTVITIGVFDNC 439 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~----~~~l~i~V~d~~ 439 (782)
..|.|.|+|++|+||++++ . |. ||||+++++++++||+++++++||+|||.|.|.+..+ ...|.|+|||++
T Consensus 5 ~~g~L~v~v~~a~~L~~~~---~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d 80 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTK---F-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFE 80 (140)
T ss_dssp BCCEEEEEEEEEESCCCCS---S-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETT
T ss_pred CCcEEEEEEEEeeCCCCCC---C-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECC
Confidence 4589999999999999765 3 56 9999999999999999999999999999999999753 578999999999
Q ss_pred CCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceee-CCCCCccccEEEEEEEEEE
Q 045512 440 HVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVL-TPSGLKKNGELHLALRFTC 497 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~-~~~g~~~~G~i~l~~~~~~ 497 (782)
.++ +|++||++.|+|.++..+.....|++|... ...+....|+|+++++|.+
T Consensus 81 ~~~------~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p 133 (140)
T 2dmh_A 81 TIG------QNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDP 133 (140)
T ss_dssp CSS------SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred CCC------CCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEEC
Confidence 876 789999999999999888888899983322 2233345699999998854
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-19 Score=165.70 Aligned_cols=122 Identities=23% Similarity=0.329 Sum_probs=106.8
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeecccc-CCCCCccccEEEEEEeCCCceEEEEEEeCCCC
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTIL-DTLDPRWNEQYTWEVYDPCTVITIGVFDNCHV 441 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~-~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~ 441 (782)
.+.|.|.|+|++|+||++++. .|. ||||+++++++.+||++++ +++||.|||.|.|.+.+....|.|+|||++.+
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~---~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~ 83 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADF---LNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG 83 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCS---SCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred CCcEEEEEEEEeccCCCCccc---CCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCC
Confidence 456999999999999998753 366 9999999999999999998 89999999999999998778999999999987
Q ss_pred CCCCCCcCCCccEEEEEecccc-cCCcEEEEEEEceeeCCCCCccccEEEEEEEEEEC
Q 045512 442 NGSKDDAIDQRIGKVRIRLSTL-ETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTCT 498 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 498 (782)
+ +|++||++.|+|.++ ..+.....||+|. . +.+..|+|+|+++|.+.
T Consensus 84 ~------~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~---~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 84 T------EDDAVGEATIPLEPVFVEGSIPPTAYNVV-K---DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp T------TTCCSEEEEEESHHHHHHSEEEEEEEEEE-E---TTEEEEEEEEEEEEEEC
T ss_pred C------CCceEEEEEEEHHHhccCCCCCcEEEEee-c---CCccCEEEEEEEEEEeC
Confidence 6 899999999999999 5566678999998 2 22456999999999764
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=168.45 Aligned_cols=120 Identities=23% Similarity=0.343 Sum_probs=101.2
Q ss_pred ccccccEEEEEEEEeecCCCCCC----------CCCCCcEEEEEECCee-eeeccccCCCCCeeccEEEEEeccCCCCeE
Q 045512 35 LVEQMHYLFVNVVKARNLPVMDV----------SGSLDPYVEVKLGNYK-GIAKHLEKNQNPVWNQIFAFSKERLQSNLV 103 (782)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~d~----------~g~~dPyv~v~~~~~~-~~T~~i~~t~nP~wne~f~f~~~~~~~~~L 103 (782)
+....|.|+|+|++|++|+++|. .|.+||||++++++++ .+|+++++|+||+|||+|.|.+.+ ...|
T Consensus 24 ~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L 101 (157)
T 2fk9_A 24 TMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHL 101 (157)
T ss_dssp CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEE
T ss_pred hccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC--CCEE
Confidence 34567899999999999998873 3679999999999865 699999999999999999999876 4689
Q ss_pred EEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 104 EVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 104 ~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
.|+|||+|.+ +|++||++.|++.++..+.. +....+.||+|++ .|+|++.+.+
T Consensus 102 ~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~-~~~~~~~W~~L~~-------~G~i~l~l~~ 155 (157)
T 2fk9_A 102 ELAVFHETPLGYDHFVANCTLQFQELLRTTG-ASDTFEGWVDLEP-------EGKVFVVITL 155 (157)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEHHHHHHHHT-TCSEEEEEEECBS-------SCEEEEEEEE
T ss_pred EEEEEECCCCCCCCEEEEEEEEHHHhhcccC-CCCcccEEEECCC-------CcEEEEEEEE
Confidence 9999999998 89999999999999975410 1123689999974 2999998865
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=169.28 Aligned_cols=130 Identities=25% Similarity=0.392 Sum_probs=102.6
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeC
Q 045512 37 EQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDK 110 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~ 110 (782)
...+.|.|+|++|++|+.++..|.+||||+|++++ .+++|+++++++||+|||+|.|.+... ...|.|+|||+
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~L~~~V~d~ 83 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ-RHRILFEVFDE 83 (176)
T ss_dssp TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT-TCEEEEEEEEC
T ss_pred CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC-CCEEEEEEEEC
Confidence 35689999999999999999899999999999986 578999999999999999999998753 47899999999
Q ss_pred CCC-CCceeEEEEEEccccCCCCCC-CCCCCCeEEEeecCCCCcccceEEEEEEEEccc
Q 045512 111 DIG-KDDFVGRVTFDLFEVPHRVPP-DSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQ 167 (782)
Q Consensus 111 d~~-~d~~lG~~~i~l~~l~~~~~~-~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 167 (782)
+.+ +|++||++.|+|.++...... +.....+||+|....+.....|+|++++.|.+.
T Consensus 84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp C----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 998 999999999999999875432 223345899998765443334999999998764
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.9e-19 Score=161.95 Aligned_cols=118 Identities=22% Similarity=0.378 Sum_probs=99.9
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeccccCCCCCeeccEEEEE-ec-
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPVWNQIFAFS-KE- 96 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~i~~t~nP~wne~f~f~-~~- 96 (782)
+++..+.+.|+. ..+.|.|+|++|+||+. +..|.+||||++++ +..+++|+++++|+||+|||+|.|. +.
T Consensus 6 ~~~~~~~~~~~~--~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~ 82 (134)
T 2b3r_A 6 HGSGAVKLSVSY--RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSK 82 (134)
T ss_dssp -CCCEEEEEEEE--ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCH
T ss_pred cccEEEEEEEee--cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCH
Confidence 456678888888 45799999999999997 67899999999999 3467899999999999999999998 65
Q ss_pred -cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 97 -RLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 97 -~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
++....|.|+|||++.+ ++++||++.++|.++..+. ...+||+|.+..
T Consensus 83 ~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 132 (134)
T 2b3r_A 83 ETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSK-----ETVKWYQLTAAT 132 (134)
T ss_dssp HHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTS-----CEEEEEECBC--
T ss_pred HHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCC-----CcceeEECCCcc
Confidence 33568999999999998 8999999999999997643 267999998653
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-19 Score=161.94 Aligned_cols=116 Identities=26% Similarity=0.500 Sum_probs=98.0
Q ss_pred ccCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeccccCCCCCeeccEEEEEec-
Q 045512 23 YRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPVWNQIFAFSKE- 96 (782)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~i~~t~nP~wne~f~f~~~- 96 (782)
+.|.+.+++.|+. ..+.|.|+|++|+||+.++..|.+||||++++ +..+++|+++++|.||+|||+|.|.+.
T Consensus 3 ~~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~ 80 (129)
T 2bwq_A 3 LSGQLSIKLWFDK--VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH 80 (129)
T ss_dssp CCCEEEEEEEEET--TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCC
T ss_pred eeEEEEEEEEEcc--CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCC
Confidence 4677889999887 45799999999999999998999999999999 346889999999999999999999852
Q ss_pred --cCCCCeEEEEEEeCCCC-C--CceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 97 --RLQSNLVEVTVKDKDIG-K--DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 97 --~~~~~~L~v~V~d~d~~-~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+.....|.|+|||++.. + +++||++.++|.++.... .++||+|+
T Consensus 81 ~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~------~~~W~~Lq 129 (129)
T 2bwq_A 81 RREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQ 129 (129)
T ss_dssp GGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS------CEEEEECC
T ss_pred HHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc------CCccEECc
Confidence 33467999999999998 5 999999999999997642 67999984
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-19 Score=164.94 Aligned_cols=124 Identities=27% Similarity=0.401 Sum_probs=107.1
Q ss_pred cccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeecccc-CCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-
Q 045512 36 VEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLE-KNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG- 113 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~-~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~- 113 (782)
..+.+.|.|+|++|++|+.++..|.+||||++++++++++|++++ ++.||+|||+|.|.+.+ ....|.|+|||++.+
T Consensus 6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~~~ 84 (136)
T 1wfj_A 6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVGT 84 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSCT
T ss_pred CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCCCC
Confidence 346789999999999999999889999999999999999999998 89999999999999987 568999999999998
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEccc
Q 045512 114 KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGTQ 167 (782)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 167 (782)
+|++||++.++|.++.... ....+||+|. ..+ .. .|+|++++.|.+.
T Consensus 85 ~d~~lG~~~i~l~~l~~~~----~~~~~w~~L~-~~~-~~-~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 85 EDDAVGEATIPLEPVFVEG----SIPPTAYNVV-KDE-EY-KGEIWVALSFKPS 131 (136)
T ss_dssp TTCCSEEEEEESHHHHHHS----EEEEEEEEEE-ETT-EE-EEEEEEEEEEEEC
T ss_pred CCceEEEEEEEHHHhccCC----CCCcEEEEee-cCC-cc-CEEEEEEEEEEeC
Confidence 8999999999999995422 1256899998 332 23 3999999988754
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=162.77 Aligned_cols=120 Identities=30% Similarity=0.432 Sum_probs=104.2
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeccccCCCCCeeccEEEEEec---c
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLG---NYKGIAKHLEKNQNPVWNQIFAFSKE---R 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~i~~t~nP~wne~f~f~~~---~ 97 (782)
.|...+++.|.. +.+.|.|+|++|++|+.++..|.+||||++++. .++++|+++++|.||+|||+|.|.+. +
T Consensus 12 ~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 89 (141)
T 2d8k_A 12 LGRIQFSVGYNF--QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK 89 (141)
T ss_dssp CCEEEEEEEECS--SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHH
T ss_pred eeEEEEEEEEeC--CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHH
Confidence 577888888886 567999999999999999989999999999995 35889999999999999999999852 2
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
.....|.|+|||++.+ ++++||++.+++.++..+. ...+||+|.....
T Consensus 90 ~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~~ 138 (141)
T 2d8k_A 90 VVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQ-----MQTFWKDLKPSGP 138 (141)
T ss_dssp HTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTS-----CEEEEECCEECCC
T ss_pred cccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCC-----CccEEEECcCCCC
Confidence 3467899999999998 8999999999999997753 2678999987654
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=164.83 Aligned_cols=123 Identities=21% Similarity=0.343 Sum_probs=99.9
Q ss_pred cCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC------EEEeeccccCCCCCccccEEEEEEeCCCceEEEEE
Q 045512 363 KGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN------KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGV 435 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~------~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V 435 (782)
.+..+.|+|+|++|+||++++. .|. ||||++++++ ..+||+++++++||.|||.|.|.+......|.|+|
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~---~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V 92 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDI---LGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEV 92 (153)
T ss_dssp CTTCEEEEEEEEEEESCC----------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCC---CCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEE
Confidence 3556999999999999997653 366 9999999963 57899999999999999999999988778999999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcE------EEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRL------YTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
||++.++ +|++||++.|+|.++..+.. ..+||+|.....++ +..|+|+|++.|
T Consensus 93 ~d~d~~~------~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~l~~ 151 (153)
T 3b7y_A 93 FDENRLT------RDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS-RVKGYLRLKMTY 151 (153)
T ss_dssp EECCSSS------CCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTC-CCCSEEEEEEEE
T ss_pred EECCCCc------CCCeeEEEEEEHHHcccCCCcccccccccccccccccCCC-CcceEEEEEEEE
Confidence 9999876 89999999999999976542 25899997654333 446999999887
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.2e-19 Score=167.65 Aligned_cols=117 Identities=19% Similarity=0.229 Sum_probs=101.4
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---e---eeeeccccCCCCCeeccEEEEEecc
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN---Y---KGIAKHLEKNQNPVWNQIFAFSKER 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~---~~~T~~i~~t~nP~wne~f~f~~~~ 97 (782)
.|...+++.|+. ..+.|.|+|++|+||+++|..|.+||||++++.+ . ++||+++++|+||+|||+|.|.+..
T Consensus 29 ~G~l~~sl~y~~--~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~ 106 (155)
T 2z0u_A 29 ATRIQIALKYDE--KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSY 106 (155)
T ss_dssp CEEEEEEEEEET--TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCH
T ss_pred cEEEEEEEEEcC--CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCH
Confidence 567888888877 5679999999999999999999999999999975 2 7899999999999999999999754
Q ss_pred --CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 98 --LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 98 --~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+....|.|+|||+|.+ ++++||++.++|.++.... ....+||+|.
T Consensus 107 ~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~----~~~~~W~~L~ 154 (155)
T 2z0u_A 107 PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSG----ERSTRWYNLL 154 (155)
T ss_dssp HHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTC----CCEEEEEEEB
T ss_pred HHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCC----CccccceEcc
Confidence 2357899999999998 9999999999999996321 2367999985
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=163.47 Aligned_cols=118 Identities=31% Similarity=0.448 Sum_probs=103.3
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeccccCCCCCeeccEEEEEecc--C
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLG---NYKGIAKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~i~~t~nP~wne~f~f~~~~--~ 98 (782)
.|...+++.|+. ..+.|.|+|++|+||+.++..+.+||||++++. .++++|+++++|.||+|||+|.|.+.. +
T Consensus 28 ~G~l~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l 105 (152)
T 1rsy_A 28 LGKLQYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 105 (152)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHH
T ss_pred ceEEEEEEEEeC--CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHc
Confidence 567888888887 567999999999999999989999999999994 468899999999999999999998753 2
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDR 148 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
....|.|+|||++.+ ++++||++.++|.++..+. ...+||+|.+.
T Consensus 106 ~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~ 151 (152)
T 1rsy_A 106 GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSA 151 (152)
T ss_dssp TTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSS-----CEEEEEECBCC
T ss_pred CCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCC-----CcceEEECCCC
Confidence 468899999999998 8999999999999997653 26799999764
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-19 Score=165.98 Aligned_cols=117 Identities=35% Similarity=0.536 Sum_probs=102.0
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe--------------eeeeccccCCCCCeecc
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY--------------KGIAKHLEKNQNPVWNQ 89 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~--------------~~~T~~i~~t~nP~wne 89 (782)
.|.+.+++.|+ .+.|.|+|++|+||+.+|..|.+||||++++++. +++|+++++|+||+|||
T Consensus 6 ~G~i~~~l~y~----~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne 81 (142)
T 1rh8_A 6 TGEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ 81 (142)
T ss_dssp CCEEEEEEEEE----TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred ceEEEEEEEEc----CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCC
Confidence 56788999998 5799999999999999999999999999999863 57999999999999999
Q ss_pred EEEEE-ec--cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 90 IFAFS-KE--RLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 90 ~f~f~-~~--~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
+|.|. +. ++....|.|+|||++.+ ++++||++.++|.++.... ..++||+|.+..
T Consensus 82 ~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 140 (142)
T 1rh8_A 82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLD-----NTPRWYPLKEQT 140 (142)
T ss_dssp EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGT-----TCCEEEECBCCC
T ss_pred EEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCC-----CCCeEEECCccC
Confidence 99997 43 33467999999999998 8999999999999987643 267999998754
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=9.2e-19 Score=159.90 Aligned_cols=114 Identities=24% Similarity=0.391 Sum_probs=98.1
Q ss_pred ccEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCC
Q 045512 39 MHYLFVNVVKARNLPVM---DVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDI 112 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~---d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~ 112 (782)
.+.|.|+|++|++|+.+ +..|.+||||++++++ ++++|+++++|+||+|||+|.|.+.......|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 36899999999999984 5568999999999986 68899999999999999999999976667899999999998
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEE
Q 045512 113 GKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAV 162 (782)
Q Consensus 113 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 162 (782)
.++++||++.++|.++..+. ....|++|... + .|+|++++
T Consensus 82 ~~~~~iG~~~i~l~~l~~~~-----~~~~~~~L~~~-~----~g~i~~~l 121 (126)
T 1rlw_A 82 VMDETLGTATFTVSSMKVGE-----KKEVPFIFNQV-T----EMVLEMSL 121 (126)
T ss_dssp SCCEEEEEEEEEGGGSCTTC-----EEEEEEEETTT-E----EEEEEEEE
T ss_pred CCCceeEEEEEEHHHccCCC-----cEEEEEEcCCC-c----eEEEEEEE
Confidence 88999999999999997643 25789999752 1 27777765
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=162.85 Aligned_cols=120 Identities=25% Similarity=0.486 Sum_probs=104.0
Q ss_pred ccCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeccccCCCCCeeccEEEEEe-c
Q 045512 23 YRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPVWNQIFAFSK-E 96 (782)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~i~~t~nP~wne~f~f~~-~ 96 (782)
..|.+.+++.|+. ..+.|.|+|++|++|+.++..|.+||||++++ +.++++|+++++|+||+|||+|.|.+ .
T Consensus 6 ~~G~i~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~ 83 (141)
T 1v27_A 6 SGGQLSIKLWFDK--VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH 83 (141)
T ss_dssp CCCEEEEEEEEET--TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCC
T ss_pred cccEEEEEEEEeC--CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCC
Confidence 3678899999886 45799999999999999999999999999999 34688999999999999999999984 2
Q ss_pred --cCCCCeEEEEEEeCCCC-C--CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 97 --RLQSNLVEVTVKDKDIG-K--DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 97 --~~~~~~L~v~V~d~d~~-~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
++....|.|+|||++.+ + +++||++.++|.++.... ..+||+|.+.+.
T Consensus 84 ~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~------~~~W~~L~~~~~ 136 (141)
T 1v27_A 84 RREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQTHDS 136 (141)
T ss_dssp TTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS------EEEEEECBCCSS
T ss_pred HHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC------CCceEECccccc
Confidence 33458999999999998 5 999999999999987532 579999987654
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=161.06 Aligned_cols=117 Identities=21% Similarity=0.327 Sum_probs=99.7
Q ss_pred cccEEEEEEEEeecCCCCCCCCC-----------CCcEEEEEECCee-eeeccccCCCCCeeccEEEEEeccCCCCeEEE
Q 045512 38 QMHYLFVNVVKARNLPVMDVSGS-----------LDPYVEVKLGNYK-GIAKHLEKNQNPVWNQIFAFSKERLQSNLVEV 105 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~-----------~dPyv~v~~~~~~-~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v 105 (782)
..+.|.|+|++|++|+++|..+. +||||++.++++. .+|+++.+|+||+|||+|.|.+.+. ..|.|
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~~ 81 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIEL 81 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC--CEEEE
Confidence 35789999999999998875443 9999999998864 6999999999999999999998764 78999
Q ss_pred EEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc
Q 045512 106 TVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT 166 (782)
Q Consensus 106 ~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (782)
+|||+|.+ +|++||++.+++.++..+.. .....|++|+. .|+|++++.+.+
T Consensus 82 ~V~d~d~~~~dd~iG~~~i~l~~l~~~~~---~~~~~w~~L~~-------~G~i~l~l~~~~ 133 (136)
T 1gmi_A 82 AVFHDAPIGYDDFVANCTIQFEELLQNGS---RHFEDWIDLEP-------EGKVYVIIDLSG 133 (136)
T ss_dssp EEEECCSSSSCEEEEEEEEEHHHHTSTTC---SEEEEEEECBS-------SCEEEEEEEEEE
T ss_pred EEEeCCCCCCCCEEEEEEEEHHHhcccCC---CCccEEEEcCC-------CeEEEEEEEEEe
Confidence 99999988 89999999999999987532 12478999964 299999998753
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=161.58 Aligned_cols=117 Identities=31% Similarity=0.452 Sum_probs=102.4
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeeeccccCCCCCeeccEEEEEecc--C
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGIAKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~i~~t~nP~wne~f~f~~~~--~ 98 (782)
.|...+++.|+. ..+.|.|+|++|++|+.++..+.+||||++++ +.++++|+++++|.||+|||+|.|.+.. +
T Consensus 20 ~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l 97 (143)
T 3f04_A 20 LGKLQYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97 (143)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHH
T ss_pred eEEEEEEEEEeC--CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhc
Confidence 467788888876 56799999999999999998899999999999 3468899999999999999999998763 3
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
....|.|+|||++.+ ++++||++.++|.++..+.. ..+||+|..
T Consensus 98 ~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~-----~~~W~~L~~ 142 (143)
T 3f04_A 98 GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV-----TEEWRDLQS 142 (143)
T ss_dssp TTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSC-----EEEEEECBC
T ss_pred CCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCC-----cceEEECcC
Confidence 458999999999998 99999999999999976542 679999975
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=166.47 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=102.7
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCc
Q 045512 38 QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDD 116 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~ 116 (782)
..+.|.|+|++|++|+..+..+.+||||+|++++++++|+++++|+||+|||+|.|.+.. ...|.|+|||+|.+ +|+
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~~~dd 111 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDV 111 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCE
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCCCCCc
Confidence 457899999999999944435569999999999999999999999999999999999864 68999999999998 999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 117 FVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
+||++.++|.++.............|++|...++.....|+|.+++.+.
T Consensus 112 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l 160 (173)
T 2nq3_A 112 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGL 160 (173)
T ss_dssp EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred eEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeee
Confidence 9999999999987543221112367999988653332349999998665
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=158.25 Aligned_cols=116 Identities=19% Similarity=0.253 Sum_probs=96.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC---EEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCC
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN---KWIRTRTILDTLDPRWNEQYTWEVYD-PCTVITIGVFDNCH 440 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~---~~~~T~~~~~t~nP~wne~~~f~v~~-~~~~l~i~V~d~~~ 440 (782)
.|.|.|+|++|+||++++..+..|. ||||++++++ +.+||+++++++||+|||.|.|.+.. ....|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 4889999999999997521123466 9999999985 78999999999999999999999964 45689999999986
Q ss_pred CCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEE
Q 045512 441 VNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALR 494 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 494 (782)
+ +|++||++.|+|+++..+.....|++|.. ...|.|+++++
T Consensus 82 ~-------~~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~~g~i~~~le 122 (126)
T 1rlw_A 82 V-------MDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLE 122 (126)
T ss_dssp S-------CCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEE
T ss_pred C-------CCceeEEEEEEHHHccCCCcEEEEEEcCC------CceEEEEEEEE
Confidence 4 58899999999999999999999999963 22366666554
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-18 Score=158.17 Aligned_cols=118 Identities=19% Similarity=0.362 Sum_probs=99.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCC--------CC-CCcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEEE
Q 045512 366 IGILELGILSAKNLMPMTSKDG--------KL-TDAYCVAKYGNKW-IRTRTILDTLDPRWNEQYTWEVYDPCTVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~--------~~-~dpyv~v~~~~~~-~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V 435 (782)
.|.|+|+|++|+||+++|.... .+ +||||++++++.. .+|+++++++||.|||.|+|.+.+. ..|.|+|
T Consensus 5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V 83 (136)
T 1gmi_A 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAV 83 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEE
T ss_pred ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEEE
Confidence 4899999999999998763210 12 4999999998865 6999999999999999999999876 8999999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCC--cEEEEEEEceeeCCCCCccccEEEEEEEEEEC
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETD--RLYTHYYPLLVLTPSGLKKNGELHLALRFTCT 498 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 498 (782)
||++.++ +|++||++.|+|+++..+ ...+.|++|.. .|+|+|+++|...
T Consensus 84 ~d~d~~~------~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--------~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 84 FHDAPIG------YDDFVANCTIQFEELLQNGSRHFEDWIDLEP--------EGKVYVIIDLSGS 134 (136)
T ss_dssp EECCSSS------SCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--------SCEEEEEEEEEEE
T ss_pred EeCCCCC------CCCEEEEEEEEHHHhcccCCCCccEEEEcCC--------CeEEEEEEEEEec
Confidence 9999876 899999999999999764 45689999852 5999999998653
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-18 Score=164.73 Aligned_cols=124 Identities=21% Similarity=0.342 Sum_probs=98.6
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC------EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN------KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVF 436 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~------~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~ 436 (782)
...|.|+|+|++|+||++++. .|. ||||++++++ ..++|+++++++||.|||.|.|.+......|.|+||
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~---~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~ 81 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDI---LGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVF 81 (176)
T ss_dssp TTCEEEEEEEEEEESCC---C---CCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEE
T ss_pred CCcEEEEEEEEEeeCCCCcCC---CCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEE
Confidence 456999999999999997754 366 9999999975 678999999999999999999999977779999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEE-E-----EEEEceeeCCCCCccccEEEEEEEEEE
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLY-T-----HYYPLLVLTPSGLKKNGELHLALRFTC 497 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~-~-----~~~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
|++.++ +|++||++.|+|.++..+... . .||+|.....++ +..|+|+|++.|.+
T Consensus 82 d~d~~~------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~l~~~p 141 (176)
T 3m7f_B 82 DENRLT------RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLP 141 (176)
T ss_dssp ECC----------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTC-CCCSEEEEEEEECC
T ss_pred ECCCCC------CCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCC-ccCEEEEEEEEEEe
Confidence 999876 899999999999999776433 2 799998755433 34699999998844
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=163.18 Aligned_cols=122 Identities=16% Similarity=0.200 Sum_probs=103.4
Q ss_pred ccCCceeEEEecccccccEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEec
Q 045512 23 YRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMD-VSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKE 96 (782)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~ 96 (782)
+.|.+.+++.|+. ..+.|.|+|++|+||+.++ ..|.+||||++++.+ .+++|+++++|+||+|||+|.|.+.
T Consensus 8 ~~G~l~~sl~y~~--~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~ 85 (148)
T 3fdw_A 8 VTGRIAFSLKYEQ--QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIP 85 (148)
T ss_dssp CCCEEEEEEEEET--TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECC
T ss_pred cceEEEEEEEEeC--CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeC
Confidence 4677888888887 5679999999999999988 579999999999973 4789999999999999999999976
Q ss_pred cC--CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 045512 97 RL--QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD 151 (782)
Q Consensus 97 ~~--~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (782)
.. ....|.|+|||++.+ ++++||++.++|.++..+.. ..+||+|.++.+.
T Consensus 86 ~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~-----~~~W~~L~~~~~~ 138 (148)
T 3fdw_A 86 ESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKK-----LDHCLPLHGKISA 138 (148)
T ss_dssp STTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCC-----SEEEEECBCC---
T ss_pred hhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCC-----ccceEECcCcccc
Confidence 43 356799999999998 89999999999999976532 5699999876543
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=8e-18 Score=156.11 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=99.7
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C-eeeeeccccCCCCCeeccEEEEEecc--
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLG---N-YKGIAKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~-~~~~T~~i~~t~nP~wne~f~f~~~~-- 97 (782)
.|...+++.|+. ..+.|.|+|++|+ ++|..|.+||||++++. + .+++|+++++|+||+|||+|.|.+..
T Consensus 12 ~G~l~~sl~y~~--~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~ 86 (138)
T 1wfm_A 12 APKLHYCLDYDC--QKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE 86 (138)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred ceEEEEEEEEeC--CCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHH
Confidence 577899999987 4579999999999 36778999999999994 2 36899999999999999999999754
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (782)
+....|.|+|||+|.+ +|++||++.++|.++.... ...+|++|.....
T Consensus 87 l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~-----~~~~W~~L~~~~~ 135 (138)
T 1wfm_A 87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPL-----GAAQWGELKTSGP 135 (138)
T ss_dssp STTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCT-----TCCEEEECCCCSC
T ss_pred cCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcc-----cccceeeCcCCCc
Confidence 3457899999999998 9999999999999996532 3679999987643
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.7e-18 Score=155.47 Aligned_cols=120 Identities=17% Similarity=0.237 Sum_probs=99.5
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-C-
Q 045512 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN--YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-K- 114 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~- 114 (782)
...|.|+|++|++|+.+|..|.+||||++++++ +.++|+++++|+||+|||+|.|.+... ..|.|+|||++.. +
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~~~ 81 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIHKK 81 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTTSS
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCCCC
Confidence 457999999999999999999999999999975 789999999999999999999998774 3599999999988 4
Q ss_pred --CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC--CcccceEEEEEEEE
Q 045512 115 --DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKG--DKITQGEIMLAVWI 164 (782)
Q Consensus 115 --d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~~~ 164 (782)
|++||++.+++.++..... ...+|++|....+ .....|+|.+++..
T Consensus 82 ~~d~~lG~~~i~l~~l~~~~~----~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 82 QGAGFLGCVRLLSNAISRLKD----TGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp TTTTEEEEEEECHHHHHHHTT----SCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCceEEEEEeHHHhhcccc----cCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 8999999999998843221 1358999987632 22224999998853
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=7e-18 Score=159.52 Aligned_cols=119 Identities=21% Similarity=0.355 Sum_probs=101.5
Q ss_pred ccCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEe--
Q 045512 23 YRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSK-- 95 (782)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~-- 95 (782)
..|...+++.|+. ..+.|.|+|++|+||+..+ .|.+||||++++.+ .+++|+++++|+||+|||+|.|.+
T Consensus 12 ~~G~~~lsL~y~~--~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 88 (153)
T 3fbk_A 12 VQGAGQLRLSIDA--QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQE 88 (153)
T ss_dssp -CCCCEEEEEEEE--SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCG
T ss_pred CCCEEEEEEEEEC--CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEeccc
Confidence 3678899999988 5579999999999999998 69999999999943 578999999999999999999998
Q ss_pred ccCCCCeEEEEEEeCCCC-C-CceeEEEEEEccccCC-CCCCCCCCCCeEEEeecCCC
Q 045512 96 ERLQSNLVEVTVKDKDIG-K-DDFVGRVTFDLFEVPH-RVPPDSPLAPQWYRLEDRKG 150 (782)
Q Consensus 96 ~~~~~~~L~v~V~d~d~~-~-d~~lG~~~i~l~~l~~-~~~~~~~~~~~w~~L~~~~~ 150 (782)
.+.. ..|.|+|||++.+ + |++||++.++|.++.. +. ...+||+|.+...
T Consensus 89 ~~~~-~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~W~~L~~~~~ 140 (153)
T 3fbk_A 89 EDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDK-----EISGWYYLLGEHL 140 (153)
T ss_dssp GGTT-SEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--C-----CEEEEEECBCTTG
T ss_pred HHhC-CEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCC-----ccccEEECCChhh
Confidence 4443 5699999999997 5 9999999999999974 22 2679999987653
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-18 Score=158.06 Aligned_cols=121 Identities=28% Similarity=0.324 Sum_probs=102.1
Q ss_pred ccCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc
Q 045512 23 YRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER 97 (782)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~ 97 (782)
..|.+.+++.|+. ..+.|.|+|++|+||+.++..| +||||++++.+ .+++|+++++|+||+|||+|.|.+..
T Consensus 9 ~~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 85 (142)
T 2dmg_A 9 PLGQIQLTIRHSS--QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSL 85 (142)
T ss_dssp SSCEEEEEEEEET--TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCH
T ss_pred CcceEEEEEEEeC--CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecH
Confidence 3577888888876 5679999999999999999888 99999999943 57899999999999999999999743
Q ss_pred --CCCCeEEEEEEeCCCC-C--CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 045512 98 --LQSNLVEVTVKDKDIG-K--DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD 151 (782)
Q Consensus 98 --~~~~~L~v~V~d~d~~-~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (782)
+....|.|+|||++.+ + +++||++.++|.++.... ...+||+|.+..+.
T Consensus 86 ~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~L~~~~~~ 139 (142)
T 2dmg_A 86 PEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAK-----GWTQWYDLTEDSGP 139 (142)
T ss_dssp HHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTT-----CBCCBCCCBCSCSC
T ss_pred HHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccc-----cccceeeccCCCCC
Confidence 2346899999999987 3 479999999999987653 26789999876543
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.1e-18 Score=157.03 Aligned_cols=118 Identities=27% Similarity=0.413 Sum_probs=101.7
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEE-ecc
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFS-KER 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~-~~~ 97 (782)
.|...+++.|+. ..+.|.|+|++|++|+.++..|.+||||++++++ .+++|+++++|.||+|||+|.|. +..
T Consensus 15 ~G~l~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 92 (142)
T 2chd_A 15 LGALEFSLLYDQ--DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITE 92 (142)
T ss_dssp CCEEEEEEEEEG--GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCH
T ss_pred cceEEEEEEEeC--CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCH
Confidence 577889999885 6689999999999999999899999999999975 68899999999999999999998 532
Q ss_pred --CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 045512 98 --LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDR 148 (782)
Q Consensus 98 --~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
+....|.|+|||++.+ ++++||++.++|.++..+.. ...|++|+.+
T Consensus 93 ~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~-----~~~~~~L~~p 141 (142)
T 2chd_A 93 EDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQR-----KNFNICLERV 141 (142)
T ss_dssp HHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCC-----EEEEEECBCC
T ss_pred HHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCc-----cEEEEecccC
Confidence 2247899999999998 89999999999999987542 5577887653
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=154.79 Aligned_cols=121 Identities=22% Similarity=0.272 Sum_probs=102.1
Q ss_pred ccCCceeEEEecccccccEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEE-ecc
Q 045512 23 YRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVS-GSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFS-KER 97 (782)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~-~~~ 97 (782)
..|...+++.|+. ..+.|.|+|++|+||+.+|.. |.+||||++++.+ ++++|+++++|+||+|||+|.|. +..
T Consensus 7 ~~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~ 84 (138)
T 1ugk_A 7 GLGTLFFSLEYNF--ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPY 84 (138)
T ss_dssp CCCEEEEEEEEEG--GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCS
T ss_pred ccEEEEEEEEEEC--CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCH
Confidence 3577888888876 567999999999999999985 8999999999964 68899999999999999999995 542
Q ss_pred --CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 98 --LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 98 --~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
+....|.|+|||++.+ ++++||++.++|.++..... ....|++|...+
T Consensus 85 ~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~----~~~~~~~l~~~~ 135 (138)
T 1ugk_A 85 TQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEG----KMLMNREIISGP 135 (138)
T ss_dssp TTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTC----CEEEEEECBSSS
T ss_pred HHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCC----cchhhhhhhcCC
Confidence 3457899999999998 89999999999999977532 235678987654
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=157.09 Aligned_cols=116 Identities=31% Similarity=0.513 Sum_probs=100.5
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccC
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERL 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~ 98 (782)
.|...+++.|. .+.|.|+|++|++|+.++..+.+||||+|++++ .+++|+++++|+||+|||+|.|.+...
T Consensus 19 ~G~l~~~l~~~----~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 94 (149)
T 1a25_A 19 RGRIYIQAHID----REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKES 94 (149)
T ss_dssp TCEEEEEEEES----SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSG
T ss_pred ceEEEEEEEec----CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccc
Confidence 46777888773 468999999999999999899999999999973 578999999999999999999998653
Q ss_pred -CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 99 -QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 99 -~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
....|.|+|||++.+ ++++||++.++|.++.... ..+||+|.+.+
T Consensus 95 ~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~------~~~W~~L~~~~ 141 (149)
T 1a25_A 95 DKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE 141 (149)
T ss_dssp GGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCC------EEEEEECBCHH
T ss_pred cCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcCc------cCCeEEccCCC
Confidence 246899999999998 8999999999999997642 57899998653
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.74 E-value=8e-18 Score=162.13 Aligned_cols=116 Identities=24% Similarity=0.302 Sum_probs=100.3
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDV-SGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~ 97 (782)
.|.+.+++.| ..+.|.|+|++|+||+.+|. .|.+||||+|++.+ .+++|+++++|+||+|||+|.|.+..
T Consensus 18 ~G~l~~~l~y----~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 93 (171)
T 2q3x_A 18 MGDIQIGMED----KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP 93 (171)
T ss_dssp CCEEEEEEEE----ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC
T ss_pred ccEEEEEEEE----CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC
Confidence 4678888888 46799999999999999985 79999999999974 37899999999999999999999865
Q ss_pred CCCCeEEEEEE-eCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 98 LQSNLVEVTVK-DKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 98 ~~~~~L~v~V~-d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
....|.|+|| |+|.+ +|++||++.++|.++..+. ...+||+|....
T Consensus 94 -~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 141 (171)
T 2q3x_A 94 -QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSS-----MVIGWYKLFPPS 141 (171)
T ss_dssp -TTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTS-----CEEEEEECBCGG
T ss_pred -CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCC-----CcceeEECCCcc
Confidence 4688999999 99998 8999999999999998643 267999998764
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-17 Score=151.79 Aligned_cols=119 Identities=19% Similarity=0.272 Sum_probs=101.1
Q ss_pred eecceEEEEEEeccccccCCCCCCCCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC---CE
Q 045512 326 KFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG---NK 401 (782)
Q Consensus 326 ~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~ 401 (782)
...|+|.+++.+. +..+.|.|+|++|+||++++. .|. ||||++++. ..
T Consensus 10 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d~---~g~~dpyv~v~~~~~~~~ 61 (141)
T 2d8k_A 10 ENLGRIQFSVGYN-------------------------FQESTLTVKIMKAQELPAKDF---SGTSDPFVKIYLLPDKKH 61 (141)
T ss_dssp CCCCEEEEEEEEC-------------------------SSSCCEEEEEEEEESCCCCSS---SSCCCEEEEEEEESCCSS
T ss_pred ceeeEEEEEEEEe-------------------------CCCCEEEEEEEEeECCCCCCC---CCCCCcEEEEEEECCCCc
Confidence 3468998888642 345889999999999997753 366 999999994 46
Q ss_pred EEeeccccCCCCCccccEEEEEEeC----CCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 402 WIRTRTILDTLDPRWNEQYTWEVYD----PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 402 ~~~T~~~~~t~nP~wne~~~f~v~~----~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
.+||+++++++||+|||.|.|.+.. ....|.|+|||++.++ +|++||++.|+|.++..+.....||+|..
T Consensus 62 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 135 (141)
T 2d8k_A 62 KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFS------RNDPIGEVSIPLNKVDLTQMQTFWKDLKP 135 (141)
T ss_dssp EEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSS------SCEEEEEEEEETTTSCTTSCEEEEECCEE
T ss_pred cEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCC------CCcEEEEEEEEhhhhcCCCCccEEEECcC
Confidence 8999999999999999999998632 2568999999999876 89999999999999998888899999986
Q ss_pred e
Q 045512 478 L 478 (782)
Q Consensus 478 ~ 478 (782)
.
T Consensus 136 ~ 136 (141)
T 2d8k_A 136 S 136 (141)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=156.81 Aligned_cols=122 Identities=30% Similarity=0.326 Sum_probs=101.1
Q ss_pred ccCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc
Q 045512 23 YRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER 97 (782)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~ 97 (782)
..|...+++.|.. ..+.|.|+|++|+||+.++..|.+||||++++++ .+++|+++++|+||+|||+|.|.+..
T Consensus 10 ~~G~l~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 87 (159)
T 1tjx_A 10 KLGDICFSLRYVP--TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF 87 (159)
T ss_dssp CCCEEEEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred cCCeEEEEEEEcC--CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCH
Confidence 3677888888877 5679999999999999999899999999999963 47899999999999999999999754
Q ss_pred --CCCCeEEEEEEeCCCC-CCceeEEEEEEcccc----------CCCCCCCCCCCCeEEEeecCC
Q 045512 98 --LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEV----------PHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 98 --~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l----------~~~~~~~~~~~~~w~~L~~~~ 149 (782)
+....|.|+|||++.+ ++++||++.|++..+ .... .....+||+|....
T Consensus 88 ~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~---~~~~~~W~~L~~~~ 149 (159)
T 1tjx_A 88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANP---RRPIAQWHTLQVEE 149 (159)
T ss_dssp GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHST---TCCEEEEEECBCHH
T ss_pred HHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCC---CCeeeeEEECcCcc
Confidence 2356899999999998 899999999999854 2111 12357899997643
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=156.10 Aligned_cols=120 Identities=27% Similarity=0.303 Sum_probs=101.2
Q ss_pred ccCCceeEEEecccccccEEEEEEEEeecCCCC-CCC------CCCCcEEEEEECC---eeeeeccccCCCCCeeccEEE
Q 045512 23 YRGGDKTASSYDLVEQMHYLFVNVVKARNLPVM-DVS------GSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFA 92 (782)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~-d~~------g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~ 92 (782)
..|.+.+++.|+. ..+.|.|+|++|+||+.+ +.+ |.+||||+|++.+ ++++|+++++|.||+|||+|.
T Consensus 11 ~~G~l~~~l~y~~--~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~ 88 (147)
T 2enp_A 11 QLGMLHFSTQYDL--LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYT 88 (147)
T ss_dssp CCCEEEEEEEEET--TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCE
T ss_pred cceEEEEEEEEcC--CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEE
Confidence 4678899999887 567999999999999984 433 5899999999973 578999999999999999999
Q ss_pred EEecc--CCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 93 FSKER--LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 93 f~~~~--~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
|.+.. +....|.|+|||++.+ ++++||++.++|.++..... ...|+.|....
T Consensus 89 f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~-----~~~w~~L~~~~ 143 (147)
T 2enp_A 89 FEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKG-----GHWWKALIPSG 143 (147)
T ss_dssp ECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTC-----CCEEECCBCCC
T ss_pred EEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCC-----ccEEEEeecCC
Confidence 98753 2346899999999998 89999999999999976432 46899998653
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=155.61 Aligned_cols=105 Identities=23% Similarity=0.304 Sum_probs=92.1
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE---CCEEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKY---GNKWIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIGVF 436 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~---~~~~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V~ 436 (782)
+..+.|.|+|++|+||++++. .+. ||||++++ +.+.+||+++++++||+|||.|.|.+.. ....|.|+||
T Consensus 39 ~~~~~L~V~v~~a~~L~~~d~---~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~ 115 (152)
T 1rsy_A 39 FQNNQLLVGIIQAAELPALDM---GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVY 115 (152)
T ss_dssp TTTTEEEEEEEEEESCCCCST---TSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEE
T ss_pred CCCCEEEEEEEEeECCCCccC---CCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEE
Confidence 345899999999999997753 366 99999999 3567899999999999999999999864 2578999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
|++.++ +|++||++.|+|.++..+....+||+|..
T Consensus 116 d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 116 DFDRFS------KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp ECCSSS------CCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred ECCCCC------CCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 999876 79999999999999988888899999974
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=150.74 Aligned_cols=123 Identities=24% Similarity=0.303 Sum_probs=97.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC--EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN--KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVN 442 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~--~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~ 442 (782)
...|+|+|++|++|+++|. .|. ||||++++++ +.++|+++++++||.|||.|.|.+.++. .|.|+|||++.++
T Consensus 4 ~~~L~V~v~~a~~L~~~d~---~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~ 79 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDF---FRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIH 79 (132)
T ss_dssp EEEEEEEEEEEESCCCCST---TCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTT
T ss_pred eEEEEEEEEEeECCCCCCC---CCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCC
Confidence 3679999999999998764 366 9999999974 7899999999999999999999998764 5999999999875
Q ss_pred CCCCCcCCCccEEEEEecccc-cCCcEEEEEEEceeeCCCC-CccccEEEEEEEE
Q 045512 443 GSKDDAIDQRIGKVRIRLSTL-ETDRLYTHYYPLLVLTPSG-LKKNGELHLALRF 495 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~g-~~~~G~i~l~~~~ 495 (782)
+...|++||++.|+++++ ........|++|....+.+ .+..|+|++++..
T Consensus 80 ---~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 80 ---KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp ---SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred ---CCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 111389999999999988 2222224789998754322 2347999998753
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-17 Score=155.56 Aligned_cols=103 Identities=27% Similarity=0.445 Sum_probs=92.0
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc-
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER- 97 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~- 97 (782)
.|...+++.|.. ..+.|.|+|++|+||+.++..|.+||||++++++ .+++|+++++|+||+|||+|.|.+..
T Consensus 23 ~G~l~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 100 (166)
T 2cm5_A 23 RGKILVSLMYST--QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100 (166)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred cceEEEEEEEEC--CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchH
Confidence 566778888776 5679999999999999999899999999999986 58899999999999999999999854
Q ss_pred -CCCCeEEEEEEeCCCC-CCceeEEEEEEcccc
Q 045512 98 -LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEV 128 (782)
Q Consensus 98 -~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l 128 (782)
+....|.|+|||++.+ ++++||++.+++.++
T Consensus 101 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133 (166)
T ss_dssp GGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred hcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence 2357999999999998 899999999999885
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-17 Score=157.49 Aligned_cols=121 Identities=16% Similarity=0.235 Sum_probs=100.9
Q ss_pred eecceEEEEEEeccccccCCCCCCCCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-----
Q 045512 326 KFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG----- 399 (782)
Q Consensus 326 ~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~----- 399 (782)
...|+|.++++.. +..+.|.|.|++|+||++++. ..+. ||||++.+.
T Consensus 7 ~~~G~l~~sl~y~-------------------------~~~~~L~V~v~~a~~L~~~d~--~~~~~dpyv~v~l~~~~~~ 59 (148)
T 3fdw_A 7 FVTGRIAFSLKYE-------------------------QQTQSLVVHVKECHQLAYADE--AKKRSNPYVKTYLLPDKSR 59 (148)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCSBT--TTTBCCEEEEEEEETCCSG
T ss_pred ccceEEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCccc--CCCCCCeEEEEEEEcCCcc
Confidence 4569998888653 345899999999999997752 2355 999999996
Q ss_pred CEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 400 NKWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 400 ~~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
..+.+|+++++++||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|+++..+.....||+|.
T Consensus 60 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 133 (148)
T 3fdw_A 60 QGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFG------RNTFLGEAEIQMDSWKLDKKLDHCLPLH 133 (148)
T ss_dssp GGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGG------CEEEEEEEEEEHHHHHHHCCSEEEEECB
T ss_pred cCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCc------CCcEEEEEEEEcccccccCCccceEECc
Confidence 3478999999999999999999998753 347999999999876 8999999999999997776678999998
Q ss_pred eeC
Q 045512 477 VLT 479 (782)
Q Consensus 477 ~~~ 479 (782)
...
T Consensus 134 ~~~ 136 (148)
T 3fdw_A 134 GKI 136 (148)
T ss_dssp CC-
T ss_pred Ccc
Confidence 653
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-17 Score=152.07 Aligned_cols=104 Identities=34% Similarity=0.514 Sum_probs=91.6
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEeccC
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKERL 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~~ 98 (782)
.|...+++.|+. ..+.|.|+|++|++|+..+..|.+||||++++++ .+++|+++++|.||+|||+|.|.+...
T Consensus 2 ~G~l~~sl~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~ 79 (138)
T 3n5a_A 2 RGELLLSLCYNP--SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79 (138)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGG
T ss_pred CcEEEEEEEEcC--CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChh
Confidence 467788888875 5679999999999999999899999999999974 478999999999999999999997543
Q ss_pred --CCCeEEEEEEeCCCC-CCceeEEEEEEccccC
Q 045512 99 --QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVP 129 (782)
Q Consensus 99 --~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~ 129 (782)
....|.|+|||++.+ +|++||++.+++.++.
T Consensus 80 ~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 80 KLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp GGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred hcCceEEEEEEEECCCCCCCcEEEEEEEccccCC
Confidence 246899999999998 8999999999998753
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-17 Score=154.80 Aligned_cols=103 Identities=33% Similarity=0.434 Sum_probs=85.0
Q ss_pred ccCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--Ce---eeeeccccCCCCCeeccEEEEEecc
Q 045512 23 YRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLG--NY---KGIAKHLEKNQNPVWNQIFAFSKER 97 (782)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~~---~~~T~~i~~t~nP~wne~f~f~~~~ 97 (782)
..|...+++.|+. ..+.|.|+|++|+||+.++..|.+||||+|++. +. +++|+++++|+||+|||+|.|.+..
T Consensus 15 ~~G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 92 (153)
T 1w15_A 15 GRGELLVSLCYQS--TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPC 92 (153)
T ss_dssp -CCEEEEEEEEET--TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCS
T ss_pred cccEEEEEEEEcC--CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCH
Confidence 4677888888876 457999999999999999988999999999994 33 6799999999999999999999865
Q ss_pred C--CCCeEEEEEEeCCCC-CCceeEEEEEEccc
Q 045512 98 L--QSNLVEVTVKDKDIG-KDDFVGRVTFDLFE 127 (782)
Q Consensus 98 ~--~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~ 127 (782)
. ....|.|+|||++.+ ++++||++.+++.+
T Consensus 93 ~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 93 ESLEEISVEFLVLDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp SSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred HHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence 3 347899999999998 89999999999987
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=156.54 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=89.9
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC------EEEeeccccCCCCCccccEEEEEEeCC---CceEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN------KWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITI 433 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~------~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i 433 (782)
+..+.|.|.|++|+||+++|. .|. ||||++++.+ .++||+++++|+||+|||.|.|.+... ...|.|
T Consensus 40 ~~~~~L~V~Vi~a~~L~~~d~---~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~ 116 (155)
T 2z0u_A 40 EKNKQFAILIIQLSNLSALLQ---QQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRV 116 (155)
T ss_dssp TTTTEEEEEEEEEECGGGTCC---SCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEE
T ss_pred CCCCEEEEEEEEccCcCCccc---CCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEE
Confidence 345899999999999998763 466 9999999965 279999999999999999999998742 458999
Q ss_pred EEEeCCCCCCCCCCcCCCccEEEEEeccccc-CCcEEEEEEEce
Q 045512 434 GVFDNCHVNGSKDDAIDQRIGKVRIRLSTLE-TDRLYTHYYPLL 476 (782)
Q Consensus 434 ~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~ 476 (782)
+|||+|.++ +|++||++.|+|.++. .+....+||+|.
T Consensus 117 ~V~d~d~~~------~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 117 DVCTTDRSH------LEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EEEEECTTS------CEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred EEEECCCCC------CCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 999999876 8999999999999995 366778999985
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-17 Score=152.71 Aligned_cols=118 Identities=21% Similarity=0.280 Sum_probs=101.4
Q ss_pred eecceEEEEEEeccccccCCCCCCCCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE---CCE
Q 045512 326 KFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKY---GNK 401 (782)
Q Consensus 326 ~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~---~~~ 401 (782)
...|+|.++++.. +..+.|.|+|++|+||++++. .+. ||||++++ +.+
T Consensus 18 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d~---~g~~dpyv~v~l~~~~~~ 69 (143)
T 3f04_A 18 EKLGKLQYSLDYD-------------------------FQNNQLLVGIIQAAELPALDM---GGTSDPYVKVFLLPDKKK 69 (143)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCBGG---GBCCCEEEEEEEESCCSC
T ss_pred cCeEEEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCCCC---CCCcCcEEEEEEECCCCc
Confidence 4568888888642 345899999999999997753 356 99999999 456
Q ss_pred EEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 402 WIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 402 ~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
.++|+++++++||.|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|.++..+....+||+|..
T Consensus 70 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS------KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS------CCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred cEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCC------CCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 89999999999999999999998732 468999999999876 89999999999999999988899999963
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.1e-17 Score=155.67 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=99.6
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGS 444 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~ 444 (782)
..+.|+|+|++|++|++.+. ..++||||+|+++++.+||+++++++||+|||.|.|.+. +...|.|+|||++.++
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~--~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~-- 108 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKN--WFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLK-- 108 (173)
T ss_dssp CCEEEEEEEEEEEECCCC----CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSS--
T ss_pred CceEEEEEEEEeECCCCccc--CCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCC--
Confidence 45889999999999984332 123599999999999999999999999999999999985 4789999999999876
Q ss_pred CCCcCCCccEEEEEecccccCC---c--EEEEEEEceeeCCCCCccccEEEEEEEEE
Q 045512 445 KDDAIDQRIGKVRIRLSTLETD---R--LYTHYYPLLVLTPSGLKKNGELHLALRFT 496 (782)
Q Consensus 445 ~~~~~d~~lG~~~i~l~~l~~~---~--~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+|++||++.|+|.++..+ . ....|++|...+. +.+..|+|++.+.+.
T Consensus 109 ----~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~-~~~~~G~L~v~l~~l 160 (173)
T 2nq3_A 109 ----SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE-PTETIGDLSICLDGL 160 (173)
T ss_dssp ----CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC-TTSEEEEEEEEEESE
T ss_pred ----CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCC-CCcccEEEEEEEeee
Confidence 899999999999998532 1 2367999987532 334579999988764
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-17 Score=148.78 Aligned_cols=103 Identities=25% Similarity=0.408 Sum_probs=84.1
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE-----CCEEEeeccccCCCCCccccEEEEEEeC----CCceEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKY-----GNKWIRTRTILDTLDPRWNEQYTWEVYD----PCTVITI 433 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~~~~~~T~~~~~t~nP~wne~~~f~v~~----~~~~l~i 433 (782)
+..+.|.|+|++|+||++++. .|. ||||++++ +....+|+++++++||+|||.|.|.+.. ....|.|
T Consensus 15 ~~~~~L~v~v~~a~~L~~~d~---~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~ 91 (129)
T 2bwq_A 15 KVGHQLIVTILGAKDLPSRED---GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEI 91 (129)
T ss_dssp TTTTEEEEEEEEEESCCCCTT---SCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEE
T ss_pred cCCCEEEEEEEEeeCCCCCCC---CCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEE
Confidence 344899999999999997653 466 99999999 4578999999999999999999999642 2468999
Q ss_pred EEEeCCCCCCCCCCcC--CCccEEEEEecccccCCcEEEEEEEce
Q 045512 434 GVFDNCHVNGSKDDAI--DQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 434 ~V~d~~~~~~~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
+|||++.++ + |++||++.|+|.++.... ..+||+|.
T Consensus 92 ~V~d~d~~~------~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq 129 (129)
T 2bwq_A 92 TLWDQARVR------EEESEFLGEILIELETALLDD-EPHWYKLQ 129 (129)
T ss_dssp EEEEC-------------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred EEEECCcCc------CcCCceeEEEEEEccccCCCc-CCccEECc
Confidence 999999865 4 899999999999987654 78999983
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-17 Score=151.89 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=99.4
Q ss_pred ceecceEEEEEEeccccccCCCCCCCCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEECC----
Q 045512 325 EKFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGN---- 400 (782)
Q Consensus 325 ~~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~---- 400 (782)
....|+|.+++... +..+.|.|.|++|+||++++.. |+||||++++.+
T Consensus 7 ~~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d~~---g~dpyv~v~l~~~~~~ 58 (142)
T 2dmg_A 7 GSPLGQIQLTIRHS-------------------------SQRNKLIVVVHACRNLIAFSED---GSDPYVRMYLLPDKRR 58 (142)
T ss_dssp SCSSCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCSSTT---CCCEEEEEEEESCCCS
T ss_pred CCCcceEEEEEEEe-------------------------CCCCEEEEEEEEeECCCCCCCC---CCCeeEEEEEEcCCCC
Confidence 34569998888653 3458999999999999987642 279999999932
Q ss_pred -EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 401 -KWIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 401 -~~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
.+++|+++++++||+|||.|.|.+.. ....|.|+|||++.++ ...|++||++.|+|.++..+....+||+|.
T Consensus 59 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~----~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~ 134 (142)
T 2dmg_A 59 SGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFL----SKDKGLLGKVLVALASEELAKGWTQWYDLT 134 (142)
T ss_dssp SSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSS----CCSCCCCEEEEEECCCSTTTTCBCCBCCCB
T ss_pred CCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCcc----ccCCcEEEEEEEecccccccccccceeecc
Confidence 57899999999999999999999863 2358999999999764 012579999999999998777778999998
Q ss_pred ee
Q 045512 477 VL 478 (782)
Q Consensus 477 ~~ 478 (782)
..
T Consensus 135 ~~ 136 (142)
T 2dmg_A 135 ED 136 (142)
T ss_dssp CS
T ss_pred CC
Confidence 63
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.2e-17 Score=150.37 Aligned_cols=121 Identities=22% Similarity=0.384 Sum_probs=98.9
Q ss_pred eecceEEEEEEeccccccCCCCCCCCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE-----C
Q 045512 326 KFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKY-----G 399 (782)
Q Consensus 326 ~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~ 399 (782)
...|+|.+++.+. +..+.|.|.|++|+||++++. .+. ||||++++ +
T Consensus 5 ~~~G~i~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d~---~g~~dpyv~v~~~~~~~~ 56 (141)
T 1v27_A 5 SSGGQLSIKLWFD-------------------------KVGHQLIVTILGAKDLPSRED---GRPRNPYVKIYFLPDRSD 56 (141)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCSS---SCCCCEEEECCCSSCCSS
T ss_pred CcccEEEEEEEEe-------------------------CCCCEEEEEEEEccCCCCcCC---CCCCCCEEEEEEecCCCC
Confidence 3469999888653 334899999999999997753 366 99999999 4
Q ss_pred CEEEeeccccCCCCCccccEEEEEEeC----CCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEc
Q 045512 400 NKWIRTRTILDTLDPRWNEQYTWEVYD----PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475 (782)
Q Consensus 400 ~~~~~T~~~~~t~nP~wne~~~f~v~~----~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 475 (782)
.+.+||+++++++||+|||.|.|.+.. ....|.|+|||++.++ ..+|++||++.|+|.++.... ..+||+|
T Consensus 57 ~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~----~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 131 (141)
T 1v27_A 57 KNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVR----EEESEFLGEILIELETALLDD-EPHWYKL 131 (141)
T ss_dssp SSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSS----SCCBCCCEEEEEEGGGCCCSS-EEEEEEC
T ss_pred CcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCc----CCCCceEEEEEEEccccCCCC-CCceEEC
Confidence 568999999999999999999999532 2468999999999875 112899999999999987655 7899999
Q ss_pred eeeC
Q 045512 476 LVLT 479 (782)
Q Consensus 476 ~~~~ 479 (782)
....
T Consensus 132 ~~~~ 135 (141)
T 1v27_A 132 QTHD 135 (141)
T ss_dssp BCCS
T ss_pred cccc
Confidence 8643
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.3e-17 Score=148.02 Aligned_cols=103 Identities=15% Similarity=0.240 Sum_probs=90.0
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE-----CCEEEeeccccCCCCCccccEEEEE-EeC---CCceEEEE
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKY-----GNKWIRTRTILDTLDPRWNEQYTWE-VYD---PCTVITIG 434 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~~~~~~T~~~~~t~nP~wne~~~f~-v~~---~~~~l~i~ 434 (782)
..+.|.|+|++|+||+. + ..|. ||||++++ +..+.||+++++++||+|||.|.|. +.. ....|.|+
T Consensus 18 ~~~~L~V~V~~a~~L~~-~---~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~ 93 (134)
T 2b3r_A 18 RNGTLFIMVMHIKDLVT-E---DGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLS 93 (134)
T ss_dssp ETTEEEEEEEEEECCCC-T---TSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEE
T ss_pred cCCEEEEEEEEeeCCCC-C---CCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEE
Confidence 34899999999999985 3 2355 99999999 4567899999999999999999999 763 35689999
Q ss_pred EEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 435 VFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 435 V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
|||++.++ +|++||++.|+|+++..++....||+|..
T Consensus 94 V~d~d~~~------~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 94 VLSAESLR------ENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp EEECCSSS------CCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred EEECCCCC------CCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 99999876 78999999999999998888899999975
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.3e-17 Score=152.49 Aligned_cols=105 Identities=24% Similarity=0.316 Sum_probs=89.8
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEe--CCCceEEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLDPRWNEQYTWEVY--DPCTVITIGV 435 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~~~f~v~--~~~~~l~i~V 435 (782)
+..+.|.|+|++|+||++++ .|. ||||++.+. ....+|+++++++||.|||.|.|.+. +....|.|+|
T Consensus 24 ~~~~~L~V~v~~a~~L~~~d----~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V 99 (153)
T 3fbk_A 24 AQDRVLLLHIIEGKGLISKQ----PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTV 99 (153)
T ss_dssp ESSSEEEEEEEEEESCCCCS----SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEE
T ss_pred CCCCEEEEEEEEeeCCCCCC----CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEE
Confidence 44589999999999999875 255 999999993 35689999999999999999999994 4556799999
Q ss_pred EeCCCCCCCCCCcC-CCccEEEEEecccccC-CcEEEEEEEceee
Q 045512 436 FDNCHVNGSKDDAI-DQRIGKVRIRLSTLET-DRLYTHYYPLLVL 478 (782)
Q Consensus 436 ~d~~~~~~~~~~~~-d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~ 478 (782)
||++.++ + |++||++.|+|+++.. +.....||+|...
T Consensus 100 ~d~d~~~------~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~ 138 (153)
T 3fbk_A 100 WNRASQS------RQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE 138 (153)
T ss_dssp EECCSSG------GGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred EeCCCCC------CCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence 9999764 5 8999999999999985 7778999999864
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=154.44 Aligned_cols=104 Identities=22% Similarity=0.320 Sum_probs=90.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEE-eCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVF-DNC 439 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~-d~~ 439 (782)
|.|.|+|++|+||+++|. ..|. ||||++++.+ .++||+++++++||+|||+|.|.+......|.|+|| |++
T Consensus 30 ~~L~V~v~~a~~L~~~d~--~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d 107 (171)
T 2q3x_A 30 GQLEVEVIRARSLTQKPG--SKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG 107 (171)
T ss_dssp TEEEEEEEEEESCCCCC-----CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred CEEEEEEEEeeCCCCCCc--CCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence 789999999999998752 1356 9999999853 378999999999999999999998766679999999 999
Q ss_pred CCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceee
Q 045512 440 HVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVL 478 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 478 (782)
.++ +|++||++.|+|+++..+....+||+|...
T Consensus 108 ~~~------~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 108 RMD------HKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp TTC------SSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCC------CCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 876 889999999999999888888999999864
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=149.39 Aligned_cols=118 Identities=25% Similarity=0.294 Sum_probs=98.1
Q ss_pred eecceEEEEEEeccccccCCCCCCCCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC----
Q 045512 326 KFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN---- 400 (782)
Q Consensus 326 ~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~---- 400 (782)
...|+|.+.+... +..|.|.|+|++|+||++++. .|. ||||++++++
T Consensus 9 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~d~---~g~~dpyv~v~l~~~~~~ 60 (159)
T 1tjx_A 9 EKLGDICFSLRYV-------------------------PTAGKLTVVILEAKNLKKMDV---GGLSDPYVKIHLMQNGKR 60 (159)
T ss_dssp GCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCST---TSCCCEEEEEEEEETTEE
T ss_pred CcCCeEEEEEEEc-------------------------CCCCEEEEEEEEeeCCCCccC---CCCCCeEEEEEEEeCCce
Confidence 4569999888642 445899999999999998753 366 9999999952
Q ss_pred -EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccc------------c
Q 045512 401 -KWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTL------------E 464 (782)
Q Consensus 401 -~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l------------~ 464 (782)
...+|+++++++||.|||.|.|.+... ...|.|+|||++.++ +|++||++.|++..+ .
T Consensus 61 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~------~~~~iG~~~i~l~~~~~~~~~w~~l~~~ 134 (159)
T 1tjx_A 61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG------KNDAIGKVFVGYNSTGAELRHWSDMLAN 134 (159)
T ss_dssp EEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS------CCEEEEEEEEETTCCHHHHHHHHHHHHS
T ss_pred eceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCC------CCceEEEEEECCCCCCcHHHHHHHHHHC
Confidence 468999999999999999999998743 357999999999876 899999999999953 3
Q ss_pred CCcEEEEEEEcee
Q 045512 465 TDRLYTHYYPLLV 477 (782)
Q Consensus 465 ~~~~~~~~~~L~~ 477 (782)
.+.....||+|..
T Consensus 135 ~~~~~~~W~~L~~ 147 (159)
T 1tjx_A 135 PRRPIAQWHTLQV 147 (159)
T ss_dssp TTCCEEEEEECBC
T ss_pred CCCeeeeEEECcC
Confidence 4567789999975
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=146.18 Aligned_cols=120 Identities=19% Similarity=0.226 Sum_probs=97.4
Q ss_pred eecceEEEEEEeccccccCCCCCCCCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC---CE
Q 045512 326 KFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG---NK 401 (782)
Q Consensus 326 ~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~~ 401 (782)
...|+|.+++... +..+.|.|+|++|+||++++.. .+. ||||++++. .+
T Consensus 6 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d~~--~~~~dpyv~v~~~~~~~~ 58 (138)
T 1ugk_A 6 SGLGTLFFSLEYN-------------------------FERKAFVVNIKEARGLPAMDEQ--SMTSDPYIKMTILPEKKH 58 (138)
T ss_dssp CCCCEEEEEEEEE-------------------------GGGTEEEEEEEEEESCCCCBTT--TTBCEEEEEEEEETTTCS
T ss_pred CccEEEEEEEEEE-------------------------CCCCEEEEEEEEeeCCCCCCCC--CCCCCCEEEEEEecCCCc
Confidence 3468998888642 4458999999999999987531 255 999999995 37
Q ss_pred EEeeccccCCCCCccccEEEEE-EeC---CCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCc-EEEEEEEce
Q 045512 402 WIRTRTILDTLDPRWNEQYTWE-VYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDR-LYTHYYPLL 476 (782)
Q Consensus 402 ~~~T~~~~~t~nP~wne~~~f~-v~~---~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~ 476 (782)
.+||+++++++||+|||.|.|. +.. ....|.|+|||++.++ +|++||++.|+|.++..+. ....|++|.
T Consensus 59 ~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~------~~~~lG~~~i~l~~l~~~~~~~~~~~~l~ 132 (138)
T 1ugk_A 59 KVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFS------RDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp EEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSC------CCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred eEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCC------CCcEEEEEEEehhHccCCCCcchhhhhhh
Confidence 8999999999999999999996 653 2358999999999876 8999999999999997654 345678887
Q ss_pred ee
Q 045512 477 VL 478 (782)
Q Consensus 477 ~~ 478 (782)
..
T Consensus 133 ~~ 134 (138)
T 1ugk_A 133 SG 134 (138)
T ss_dssp SS
T ss_pred cC
Confidence 54
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-16 Score=145.35 Aligned_cols=116 Identities=13% Similarity=0.082 Sum_probs=96.0
Q ss_pred eecceEEEEEEeccccccCCCCCCCCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC---C-
Q 045512 326 KFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG---N- 400 (782)
Q Consensus 326 ~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~---~- 400 (782)
...|+|.+.+... ...+.|.|+|++|++ + +..|. ||||++.+. +
T Consensus 10 ~~~G~l~~sl~y~-------------------------~~~~~L~V~v~~a~~---~---d~~g~sDPyv~v~l~~~~~~ 58 (138)
T 1wfm_A 10 NQAPKLHYCLDYD-------------------------CQKAELFVTRLEAVT---S---NHDGGCDCYVQGSVANRTGS 58 (138)
T ss_dssp SSCCEEEEEEEEE-------------------------TTTTEEEEEEEEEEC---C---CCSSCCCEEEEEEEEETTEE
T ss_pred CcceEEEEEEEEe-------------------------CCCCEEEEEEEEEEc---C---CCCCCcceEEEEEEEcCCCc
Confidence 3468988888643 334899999999994 3 33466 999999993 2
Q ss_pred EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 401 KWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 401 ~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
.+++|+++++++||+|||.|.|.+... ...|.|+|||+|.++ +|++||++.|+|.++..+.....||+|..
T Consensus 59 ~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~------~dd~lG~~~i~l~~l~~~~~~~~W~~L~~ 132 (138)
T 1wfm_A 59 VEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS------RHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp EEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSC------TTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred ccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCC------CCcEEEEEEEEcccccCcccccceeeCcC
Confidence 368999999999999999999998743 458999999999876 89999999999999976666789999986
Q ss_pred e
Q 045512 478 L 478 (782)
Q Consensus 478 ~ 478 (782)
.
T Consensus 133 ~ 133 (138)
T 1wfm_A 133 S 133 (138)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=148.78 Aligned_cols=102 Identities=24% Similarity=0.405 Sum_probs=89.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG-----NKWIRTRTILDTLDPRWNEQYTWEVYDP--CTVITIGVFDN 438 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~~~f~v~~~--~~~l~i~V~d~ 438 (782)
+.|.|+|++|+||++++. .+. ||||++++. ...+||+++++++||+|||+|.|.+... ...|.|+|||+
T Consensus 31 ~~L~v~v~~a~~L~~~d~---~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 107 (149)
T 1a25_A 31 EVLIVVVRDAKNLVPMDP---NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 107 (149)
T ss_dssp SEEEEEEEEEESCCCCST---TSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred CEEEEEEEEeeCCCCCCC---CCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEEC
Confidence 689999999999998753 366 999999996 4678999999999999999999999753 45899999999
Q ss_pred CCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceee
Q 045512 439 CHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVL 478 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 478 (782)
+.++ +|++||++.|+|.++..+. ..+||+|...
T Consensus 108 d~~~------~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 140 (149)
T 1a25_A 108 DLTS------RNDFMGSLSFGISELQKAG-VDGWFKLLSQ 140 (149)
T ss_dssp CSSS------CCEEEEEEEEEHHHHTTCC-EEEEEECBCH
T ss_pred CCCC------CCCEEEEEEEEHHHhCcCc-cCCeEEccCC
Confidence 9876 7999999999999998764 7899999753
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=149.48 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=99.8
Q ss_pred eecceEEEEEEeccccccCCCCCCCCCCCCccccccccCcceEEEEEEEEeeCCCCC-CCC---CCCCC-CcEEEEEEC-
Q 045512 326 KFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPM-TSK---DGKLT-DAYCVAKYG- 399 (782)
Q Consensus 326 ~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~-~~~---~~~~~-dpyv~v~~~- 399 (782)
...|+|.+.++.. +..+.|.|+|++|+||++. +.. +..+. ||||++++.
T Consensus 10 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~ 64 (147)
T 2enp_A 10 YQLGMLHFSTQYD-------------------------LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLP 64 (147)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEET
T ss_pred CcceEEEEEEEEc-------------------------CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEe
Confidence 4569999888653 3458999999999999973 331 11345 999999996
Q ss_pred --CEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEE
Q 045512 400 --NKWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYP 474 (782)
Q Consensus 400 --~~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 474 (782)
.+.+||+++++++||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|.++..+.....|++
T Consensus 65 ~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~------~~~~iG~~~i~l~~l~~~~~~~~w~~ 138 (147)
T 2enp_A 65 DQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFS------RHCVIGKVSVPLCEVDLVKGGHWWKA 138 (147)
T ss_dssp CCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTC------CSCCCEEEEEETTTSCTTTCCCEEEC
T ss_pred CCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCc------CCcEEEEEEEechhcCCCCCccEEEE
Confidence 3578999999999999999999998642 358999999999876 78999999999999977666678999
Q ss_pred ceee
Q 045512 475 LLVL 478 (782)
Q Consensus 475 L~~~ 478 (782)
|...
T Consensus 139 L~~~ 142 (147)
T 2enp_A 139 LIPS 142 (147)
T ss_dssp CBCC
T ss_pred eecC
Confidence 9753
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.8e-17 Score=151.79 Aligned_cols=102 Identities=25% Similarity=0.364 Sum_probs=88.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE--------------EEeeccccCCCCCccccEEEEE-EeC---C
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK--------------WIRTRTILDTLDPRWNEQYTWE-VYD---P 427 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~--------------~~~T~~~~~t~nP~wne~~~f~-v~~---~ 427 (782)
|.|.|+|++|+||++++. .|. ||||++++++. .+||+++++++||+|||.|.|. +.. .
T Consensus 18 ~~L~V~v~~a~~L~~~d~---~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~ 94 (142)
T 1rh8_A 18 GNLIIHILQARNLVPRDN---NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLM 94 (142)
T ss_dssp TEEEEEEEEEESCCCCSS---SSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHT
T ss_pred CEEEEEEEEecCCCCCCC---CCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHcc
Confidence 789999999999998753 466 99999999763 4799999999999999999997 542 3
Q ss_pred CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 428 CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 428 ~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
...|.|+|||++.++ +|++||++.|+|+++..+.....||+|..
T Consensus 95 ~~~l~i~V~d~d~~~------~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 138 (142)
T 1rh8_A 95 KKTLEVTVWDYDRFS------SNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp TCEEEEEEEEECSSS------CEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred CCEEEEEEEECCCCC------CCceEEEEEEeccccccCCCCCeEEECCc
Confidence 568999999999876 79999999999999987666789999975
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=147.08 Aligned_cols=118 Identities=23% Similarity=0.313 Sum_probs=98.9
Q ss_pred eecceEEEEEEeccccccCCCCCCCCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC----
Q 045512 326 KFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN---- 400 (782)
Q Consensus 326 ~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~---- 400 (782)
...|+|.+.+... +..+.|.|+|++|+||++++. .|. ||||++++++
T Consensus 13 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~d~---~g~~dpyv~v~~~~~~~~ 64 (142)
T 2chd_A 13 TTLGALEFSLLYD-------------------------QDNSNLQCTIIRAKGLKPMDS---NGLADPYVKLHLLPGASK 64 (142)
T ss_dssp -CCCEEEEEEEEE-------------------------GGGTEEEEEEEEEESCCCCCT---TSCCCEEEEEEEESCCSG
T ss_pred CccceEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCCCC---CCCCCCEEEEEEEcCCCC
Confidence 4468888888643 345899999999999998753 466 9999999965
Q ss_pred -EEEeeccccCCCCCccccEEEEE-EeCC---CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEc
Q 045512 401 -KWIRTRTILDTLDPRWNEQYTWE-VYDP---CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475 (782)
Q Consensus 401 -~~~~T~~~~~t~nP~wne~~~f~-v~~~---~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 475 (782)
..+||+++++++||+|||.|.|. +... ...|.|+|||++.++ +|++||++.|+|.++..++....|++|
T Consensus 65 ~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~------~d~~iG~~~i~l~~l~~~~~~~~~~~L 138 (142)
T 2chd_A 65 SNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFG------HNEFIGETRFSLKKLKANQRKNFNICL 138 (142)
T ss_dssp GGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTS------CEEEEEEEEEEGGGCCTTCCEEEEEEC
T ss_pred cceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCC------CCcEEEEEEEEHHHcCCCCccEEEEec
Confidence 68999999999999999999998 5421 368999999999876 789999999999999988877888888
Q ss_pred ee
Q 045512 476 LV 477 (782)
Q Consensus 476 ~~ 477 (782)
..
T Consensus 139 ~~ 140 (142)
T 2chd_A 139 ER 140 (142)
T ss_dssp BC
T ss_pred cc
Confidence 63
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-16 Score=144.70 Aligned_cols=92 Identities=25% Similarity=0.299 Sum_probs=79.5
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCC---ceEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYTWEVYDPC---TVITIG 434 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~~~f~v~~~~---~~l~i~ 434 (782)
+..|.|.|.|++|+||++++. .|. ||||++++++ .+.+|++++++.||.|||.|.|.+.... ..|.|+
T Consensus 13 ~~~~~L~v~v~~a~~L~~~d~---~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~ 89 (138)
T 3n5a_A 13 PSANSIIVNIIKARNLKAMDI---GGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIIT 89 (138)
T ss_dssp TTTTEEEEEEEEEESCCCCBT---TTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEE
T ss_pred CCCCeEEEEEEEeeCCCCcCC---CCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEE
Confidence 445899999999999998754 356 9999999964 4789999999999999999999987543 589999
Q ss_pred EEeCCCCCCCCCCcCCCccEEEEEeccccc
Q 045512 435 VFDNCHVNGSKDDAIDQRIGKVRIRLSTLE 464 (782)
Q Consensus 435 V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~ 464 (782)
|||++.++ +|++||++.|+|.++.
T Consensus 90 V~d~~~~~------~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 90 VMDKDKLS------RNDVIGKIYLSWKSGP 113 (138)
T ss_dssp EEECCSSS------CCEEEEEEEESSSSCH
T ss_pred EEECCCCC------CCcEEEEEEEccccCC
Confidence 99999876 8999999999999763
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.66 E-value=7.6e-16 Score=147.63 Aligned_cols=118 Identities=20% Similarity=0.281 Sum_probs=96.4
Q ss_pred eecceEEEEEEeccccccCCCCCCCCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC----
Q 045512 326 KFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN---- 400 (782)
Q Consensus 326 ~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~---- 400 (782)
...|+|.+++.+. +..+.|.|.|++|+||++++. .|. ||||++++++
T Consensus 21 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~d~---~g~~DPyv~v~l~~~~~~ 72 (166)
T 2cm5_A 21 EERGKILVSLMYS-------------------------TQQGGLIVGIIRCVHLAAMDA---NGYSDPFVKLWLKPDMGK 72 (166)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCST---TSCCCEEEEEEEETC---
T ss_pred CccceEEEEEEEE-------------------------CCCCEEEEEEEEeECCCCccC---CCCCCcEEEEEEECCCCc
Confidence 4568888888642 345899999999999998754 366 9999999975
Q ss_pred -EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCcCCCccEEEEEeccccc------------
Q 045512 401 -KWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLE------------ 464 (782)
Q Consensus 401 -~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~------------ 464 (782)
..++|+++++++||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|.++.
T Consensus 73 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~------~~~~iG~~~i~l~~~~~~~~~W~~l~~~ 146 (166)
T 2cm5_A 73 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGK------SNDYIGGCQLGISAKGERLKHWYECLKN 146 (166)
T ss_dssp CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS------CCEEEEEEEEETTCCHHHHHHHHHHHHC
T ss_pred cceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCC------CCcEEEeEEEecccCCchhHHHHHHHhC
Confidence 679999999999999999999999742 458999999999876 8999999999999863
Q ss_pred CCcEEEEEEEcee
Q 045512 465 TDRLYTHYYPLLV 477 (782)
Q Consensus 465 ~~~~~~~~~~L~~ 477 (782)
.++....|++|..
T Consensus 147 ~~~~~~~Wh~L~~ 159 (166)
T 2cm5_A 147 KDKKIERWHQLQN 159 (166)
T ss_dssp TTCCEEEEEECBC
T ss_pred CCCcceEeeECCC
Confidence 3445556666654
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-16 Score=141.87 Aligned_cols=88 Identities=27% Similarity=0.325 Sum_probs=74.3
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeecccc-CCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CC
Q 045512 38 QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLE-KNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KD 115 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~-~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d 115 (782)
.++.|.|+|++|++|+. .|.+||||+++ ++..+|+++. +|.||+|||+|.|.+... ...|.|+|||+| + +|
T Consensus 3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~d 75 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIWD 75 (131)
T ss_dssp CCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-SSCE
T ss_pred cceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-CCCC
Confidence 46799999999999853 68899999999 3444565555 799999999999999864 467999999999 7 99
Q ss_pred ceeEEEEEEccccCCCC
Q 045512 116 DFVGRVTFDLFEVPHRV 132 (782)
Q Consensus 116 ~~lG~~~i~l~~l~~~~ 132 (782)
++||++.|+|.++....
T Consensus 76 d~iG~~~i~l~~l~~~~ 92 (131)
T 2cjt_A 76 TMVGTVWIPLRTIRQSN 92 (131)
T ss_dssp EEEEEEEEEGGGSCBCS
T ss_pred CeEEEEEEEHHHhhhcC
Confidence 99999999999987543
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=135.96 Aligned_cols=115 Identities=15% Similarity=0.185 Sum_probs=100.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeecccc-CCCCCeeccEEEEEeccC--CCCeEEEEEEeCCCC-CCc
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLE-KNQNPVWNQIFAFSKERL--QSNLVEVTVKDKDIG-KDD 116 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~-~t~nP~wne~f~f~~~~~--~~~~L~v~V~d~d~~-~d~ 116 (782)
.|+|+|.+|.+|+ |++|||+++.+.+.+++|++++ ++.||+|||.|.|++..+ .+..|.|.|||++.+ +++
T Consensus 22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nr 96 (144)
T 3l9b_A 22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNK 96 (144)
T ss_dssp EEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCE
T ss_pred EEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCC
Confidence 5899999999999 5789999999999999999998 699999999999998642 468999999999999 999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc
Q 045512 117 FVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT 166 (782)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (782)
+||++.++|+++..... ...+-+|.+.++.... ++|.+++.|.+
T Consensus 97 lIG~~~i~Lq~lv~~~~-----l~l~~~LvD~n~~~~~-a~I~l~l~Y~p 140 (144)
T 3l9b_A 97 LIGTFRMVLQKVVEENR-----VEVSDTLIDDNNAIIK-TSLSMEVRYQA 140 (144)
T ss_dssp EEEEEEEESHHHHHHSE-----EEEEEEEECTTSCEEE-EEEEEEEEEEE
T ss_pred EEEEEEEEhHHhccCCe-----EEEeecccCCCCCccc-cEEEEEEEecC
Confidence 99999999999987542 3356788888887766 99999998875
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=143.15 Aligned_cols=121 Identities=21% Similarity=0.203 Sum_probs=90.1
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeecccc-CCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CC
Q 045512 38 QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLE-KNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KD 115 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~-~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d 115 (782)
.++.|.|+|++|++|+ ..|.+||||+++ ++..+|+++. +|.||+|||+|.|.+... ...|.|+|||+| + +|
T Consensus 12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~d 84 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIWD 84 (167)
T ss_dssp CCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-SSCC
T ss_pred ceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-CCCC
Confidence 3679999999999885 268899999999 4445677665 699999999999999874 467999999999 6 99
Q ss_pred ceeEEEEEEccccCCCCCCC-CCCCCeEEEeecCCCCc-----ccceEEEEEEEEc
Q 045512 116 DFVGRVTFDLFEVPHRVPPD-SPLAPQWYRLEDRKGDK-----ITQGEIMLAVWIG 165 (782)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~~~-----~~~G~l~l~~~~~ 165 (782)
++||++.|+|.++....... ..+.+.|+++..++|.. ...|.+++.+++.
T Consensus 85 d~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e 140 (167)
T 2cjs_A 85 TMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 140 (167)
T ss_dssp EEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred ceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence 99999999999987543111 12344566655444431 1125577777764
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-15 Score=140.67 Aligned_cols=89 Identities=26% Similarity=0.288 Sum_probs=73.8
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--Ce---eeecccccCCCCCCcccceeEEEecCCC--CCeEEEEEEEcc
Q 045512 202 YYLRVFVFEAQDLVPSEEGRAPDAYVKIQLG--NL---VRVTRPSHVRSVNPVWNEEHMFVASEPF--EDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg--~~---~~kT~~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~d~d 274 (782)
+.|.|+|++|++|+..+..+.+||||++.+. +. .++|+++++ +.||.|||+|.|.+.... ...|.|+|||++
T Consensus 30 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d 108 (153)
T 1w15_A 30 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESLEEISVEFLVLDSE 108 (153)
T ss_dssp TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred CEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccC-CCCCeecceEEEECCHHHhCceEEEEEEEeCC
Confidence 4699999999999999988999999999994 33 679999987 999999999999986543 357999999999
Q ss_pred CCCCCceeEEEEEeCCC
Q 045512 275 GPGKDEILGREFIPVRN 291 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~ 291 (782)
..+++++||++.++++.
T Consensus 109 ~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 109 RGSRNEVIGRLVLGATA 125 (153)
T ss_dssp TTSCCEEEEEEEESTTC
T ss_pred CCCCCcEEEEEEECCCC
Confidence 99999999999999988
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-15 Score=136.39 Aligned_cols=85 Identities=22% Similarity=0.380 Sum_probs=72.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeecccc-CCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTIL-DTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNG 443 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~-~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~ 443 (782)
.+.|.|+|++|++|.. .|. ||||+++ ++..+|++++ +++||.|||.|.|.+.++...|.|+|||+| ++
T Consensus 4 ~~~L~V~V~~A~~l~~------~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~- 73 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA------QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI- 73 (131)
T ss_dssp CEEEEEEEEEEECSSC------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SS-
T ss_pred ceEEEEEEEEeECCCC------CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CC-
Confidence 4899999999998852 355 9999999 3345666665 699999999999999987778999999999 76
Q ss_pred CCCCcCCCccEEEEEecccccC
Q 045512 444 SKDDAIDQRIGKVRIRLSTLET 465 (782)
Q Consensus 444 ~~~~~~d~~lG~~~i~l~~l~~ 465 (782)
+|++||++.|+|+++..
T Consensus 74 -----~dd~iG~~~i~l~~l~~ 90 (131)
T 2cjt_A 74 -----WDTMVGTVWIPLRTIRQ 90 (131)
T ss_dssp -----CEEEEEEEEEEGGGSCB
T ss_pred -----CCCeEEEEEEEHHHhhh
Confidence 79999999999999854
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.8e-15 Score=131.21 Aligned_cols=117 Identities=15% Similarity=0.215 Sum_probs=100.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeecccc-CCCCCccccEEEEEEeC---CCceEEEEEEeCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTIL-DTLDPRWNEQYTWEVYD---PCTVITIGVFDNCHV 441 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~-~t~nP~wne~~~f~v~~---~~~~l~i~V~d~~~~ 441 (782)
-.|+|.|.+|.||+ |+ |||+++.+.+.+++|++++ .+.||+|||.|+|++.. ..+.|.|.|+|++.+
T Consensus 21 msL~V~l~~a~~Lp--------g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v 92 (144)
T 3l9b_A 21 MALIVHLKTVSELR--------GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV 92 (144)
T ss_dssp EEEEEEEEEEESCC--------SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTT
T ss_pred EEEEEEEEEecCCC--------CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccc
Confidence 47999999999998 46 9999999999999999998 59999999999999984 467999999999998
Q ss_pred CCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEEECc
Q 045512 442 NGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTCTA 499 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~ 499 (782)
+ ++.+||++.|+|.++..+....-+-+|.+.+.+ .-.+.|.++++|++..
T Consensus 93 ~------~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~--~~~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 93 F------SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNA--IIKTSLSMEVRYQAAD 142 (144)
T ss_dssp S------CCEEEEEEEEESHHHHHHSEEEEEEEEECTTSC--EEEEEEEEEEEEEETT
T ss_pred c------CCCEEEEEEEEhHHhccCCeEEEeecccCCCCC--ccccEEEEEEEecCCC
Confidence 7 899999999999999877777777888775432 2248899988887643
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.57 E-value=6e-15 Score=168.08 Aligned_cols=122 Identities=22% Similarity=0.386 Sum_probs=104.7
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CC
Q 045512 37 EQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KD 115 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d 115 (782)
...+.|.|+|++|++|+++|..|.+||||++++++++++|+++++|+||+|||+|.|.+.......|.|+|||+|.+ +|
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~ 463 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPD 463 (510)
T ss_dssp --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSC
T ss_pred CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCC
Confidence 35679999999999999999999999999999999999999999999999999999999877778899999999998 89
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 116 DFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
++||++.+++.++..+...+. ....|++|.... .|+|.+++.+
T Consensus 464 d~lG~~~~~l~~l~~~~~~~~-~~~~~~~l~~~~-----~G~i~l~~~l 506 (510)
T 3jzy_A 464 DFLGRTEIPVAKIRTEQESKG-PMTRRLLLHEVP-----TGEVWVRFDL 506 (510)
T ss_dssp CEEEEEEEEHHHHHHHHHHHC-SCCEEEECBSSS-----SCEEEEEEEE
T ss_pred CceEEEEEEHHHhccccCCCC-ceeeeecCCCCC-----CceEEEEEEE
Confidence 999999999999876432111 256899997642 2899888755
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=162.39 Aligned_cols=109 Identities=22% Similarity=0.300 Sum_probs=94.4
Q ss_pred cccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEecc-CCCCeEEEEEEeCCCC-CC
Q 045512 38 QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKER-LQSNLVEVTVKDKDIG-KD 115 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~-~~~~~L~v~V~d~d~~-~d 115 (782)
.++.|.|+|++|++|+. |..|.+||||+|++++++++|+++++|+||+|||+|.|.+.. .....|.|+|||+|.. +|
T Consensus 392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d 470 (540)
T 3nsj_A 392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD 470 (540)
T ss_dssp TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence 47899999999999998 989999999999999999999999999999999999998643 3568899999999998 88
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 116 DFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
|+||++.++|.. + ....|++|.. |+|++++.+
T Consensus 471 D~LG~~~~~L~~---g------~~~~~~~l~~--------G~l~~~~~~ 502 (540)
T 3nsj_A 471 DLLGSCDRSPHS---G------FHEVTCELNH--------GRVKFSYHA 502 (540)
T ss_dssp EEEEEEEECCCS---E------EEEEEEECSS--------SEEEEEEEE
T ss_pred CEEEEEEEEeeC---C------cEEEEEEcCC--------eEEEEEEEE
Confidence 999999999872 2 1457888642 888888754
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-14 Score=136.72 Aligned_cols=117 Identities=20% Similarity=0.294 Sum_probs=87.4
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeecccc-CCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTIL-DTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVN 442 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~-~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~ 442 (782)
..+.|.|+|++|++|.. .|. ||||+++ ++..||++++ ++.||+|||.|.|.+.+....|.|+|||+| ++
T Consensus 12 ~~~~L~V~V~~A~~l~~------~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~ 82 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDGA------QEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI 82 (167)
T ss_dssp CCCEEEEEEEEEECSSC------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SS
T ss_pred ceEEEEEEEEEEECCCC------CCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CC
Confidence 35899999999998841 355 9999999 3446777776 699999999999999987789999999999 66
Q ss_pred CCCCCcCCCccEEEEEecccccCCc------EEEEEEEceeeCCC--CC--ccccEEEEEEEEE
Q 045512 443 GSKDDAIDQRIGKVRIRLSTLETDR------LYTHYYPLLVLTPS--GL--KKNGELHLALRFT 496 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~~~--g~--~~~G~i~l~~~~~ 496 (782)
+|++||++.|+|+++.... ....||.+.....+ |. ...|.++++++|.
T Consensus 83 ------~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e 140 (167)
T 2cjs_A 83 ------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 140 (167)
T ss_dssp ------CCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred ------CCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence 7999999999999985432 33445554432211 11 1145677777763
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-14 Score=158.54 Aligned_cols=125 Identities=17% Similarity=0.251 Sum_probs=100.6
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC--CCceEEEEEEeCCC
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYD--PCTVITIGVFDNCH 440 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~--~~~~l~i~V~d~~~ 440 (782)
...|.|+|+|++|+||+. |. .|. ||||+|+++++.+||+++++++||+|||.|.|.+.+ ....|.|+|||+|.
T Consensus 391 ~~~~~L~V~V~~A~~L~~-D~---~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~ 466 (540)
T 3nsj_A 391 RGLAHLVVSNFRAEHLWG-DY---TTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY 466 (540)
T ss_dssp TTEEEEEEEEEEEESCCC-SS---CSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS
T ss_pred CcccEEEEEEEEccCCCc-cc---CCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCC
Confidence 347899999999999986 53 366 999999999999999999999999999999999753 56789999999998
Q ss_pred CCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEEECchhhHHhhcCCCCCC
Q 045512 441 VNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFTCTAWVSMVTKYGMPLLP 513 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~~~~~~~~~~~p~~p 513 (782)
.+ +||+||++.++|.. | ....|++|. .|.|++.+++.+. +++-..++.--.|
T Consensus 467 ~~------~dD~LG~~~~~L~~---g-~~~~~~~l~---------~G~l~~~~~~~c~--p~l~g~~c~~y~~ 518 (540)
T 3nsj_A 467 GW------DDDLLGSCDRSPHS---G-FHEVTCELN---------HGRVKFSYHAKCL--PHLTGGTCLEYAP 518 (540)
T ss_dssp SS------CCEEEEEEEECCCS---E-EEEEEEECS---------SSEEEEEEEEEEC--TTEESTTSCEECC
T ss_pred CC------CCCEEEEEEEEeeC---C-cEEEEEEcC---------CeEEEEEEEEEEC--CCCCCChhhhcCC
Confidence 76 78999999999983 3 367888863 3999998877663 3444444433333
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=163.45 Aligned_cols=118 Identities=25% Similarity=0.440 Sum_probs=101.2
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCC-ceEEEEEEeCCCC
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPC-TVITIGVFDNCHV 441 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~-~~l~i~V~d~~~~ 441 (782)
...|.|.|+|++|+||+++|. .|. ||||++.++++.++|+++++++||.|||.|.|.+..+. ..|.|+|||+|.+
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d~---~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~ 460 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACKP---NGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF 460 (510)
T ss_dssp --CEEEEEEEEEEESCCCCST---TSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred CCCceEEEEeceeecCCCCCC---CCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence 457899999999999997653 466 99999999999999999999999999999999998754 5799999999987
Q ss_pred CCCCCCcCCCccEEEEEecccccCCcE----EEEEEEceeeCCCCCccccEEEEEEEEE
Q 045512 442 NGSKDDAIDQRIGKVRIRLSTLETDRL----YTHYYPLLVLTPSGLKKNGELHLALRFT 496 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+ +|++||++.++|.++..+.. ...|++|.. +..|+|++++++.
T Consensus 461 ~------~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~------~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 461 S------PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHE------VPTGEVWVRFDLQ 507 (510)
T ss_dssp S------SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBS------SSSCEEEEEEEEE
T ss_pred C------CCCceEEEEEEHHHhccccCCCCceeeeecCCC------CCCceEEEEEEEE
Confidence 6 89999999999999976543 678999864 2459999988774
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6e-14 Score=161.09 Aligned_cols=119 Identities=24% Similarity=0.381 Sum_probs=103.8
Q ss_pred cccEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeeeccccCC-CCCeeccEEEEEeccCCCCeEEEEEEe
Q 045512 38 QMHYLFVNVVKARNLPVMDV--SGSLDPYVEVKLGN-----YKGIAKHLEKN-QNPVWNQIFAFSKERLQSNLVEVTVKD 109 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~-----~~~~T~~i~~t-~nP~wne~f~f~~~~~~~~~L~v~V~d 109 (782)
..+.|.|+|++|++|+..+. .|.+||||+|.+.+ .+++|++++++ .||+|||+|.|.+..+....|+|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 45789999999999999873 68999999999954 58899999997 999999999999887666799999999
Q ss_pred CCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 110 KDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 110 ~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
+|.+ ++++||++.++|..|..+ .+|++|.+..|.....|.|.+.+.+
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~G--------~r~v~L~d~~g~~~~~~~L~v~i~~ 622 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQHPSATLFVKISI 622 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCCE--------EEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred cCCCCCCceeEEEEEEHHHcCCC--------cEEEeCCCCCcCCCCceEEEEEEEE
Confidence 9998 999999999999999753 3699999988876444888888866
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.46 E-value=7.9e-14 Score=160.97 Aligned_cols=106 Identities=25% Similarity=0.414 Sum_probs=94.9
Q ss_pred cccEEEEEEEEeecCCC---CCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCC
Q 045512 38 QMHYLFVNVVKARNLPV---MDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKD 111 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~---~d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d 111 (782)
+.+.|.|+|++|++|+. +|..|.+||||+|++++ .+++|+++++|+||+|||+|.|.+.......|.|+|||+|
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D 95 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN 95 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECC
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECC
Confidence 57899999999999998 78789999999999984 6889999999999999999999998766789999999999
Q ss_pred CCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 045512 112 IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDR 148 (782)
Q Consensus 112 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
.++|++||++.++|.++..+.. ...|++|...
T Consensus 96 ~~~ddfIG~v~I~L~~L~~g~~-----~~~w~~L~~~ 127 (749)
T 1cjy_A 96 YVMDETLGTATFTVSSMKVGEK-----KEVPFIFNQV 127 (749)
T ss_dssp SSSCEEEEEECCBSTTSCTTCC-----CCEEEEETTT
T ss_pred CCCCceeEEEEEEHHHcCCCCc-----eEEEEecCCC
Confidence 8889999999999999976542 5699999753
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-15 Score=165.62 Aligned_cols=124 Identities=18% Similarity=0.337 Sum_probs=21.2
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEECCE-EEeeccccCC---CCCccccEEEEEEeCCCceEEEEEEeC-C
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNK-WIRTRTILDT---LDPRWNEQYTWEVYDPCTVITIGVFDN-C 439 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t---~nP~wne~~~f~v~~~~~~l~i~V~d~-~ 439 (782)
..|.|+|+|++|+||+++| ||||+++++++ +.||+++++| +||+|||.|+|.+......|.|+|||+ |
T Consensus 9 ~~~~L~V~VieAk~L~~~d-------dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d 81 (483)
T 3bxj_A 9 VDNVLKLWIIEARELPPKK-------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSD 81 (483)
T ss_dssp EEECC----------------------------------------------------CCEECC-----------------
T ss_pred eccEEEEEEEEcCCcCCCC-------CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCC
Confidence 4578999999999998543 89999999876 6799999999 999999999999765567899999994 4
Q ss_pred CCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCC---------------------CCCccccEEEEEEEEEEC
Q 045512 440 HVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTP---------------------SGLKKNGELHLALRFTCT 498 (782)
Q Consensus 440 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~---------------------~g~~~~G~i~l~~~~~~~ 498 (782)
.. ++.++|++||++.|++.++..++..++||+|...+. +|.+..|.|+|+++|...
T Consensus 82 ~~---~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~ 158 (483)
T 3bxj_A 82 KK---RKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTM 158 (483)
T ss_dssp ----------------------------CCEECC--------------------------------------CEEEEEEC
T ss_pred cc---ccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeee
Confidence 20 011279999999999999998888899999976543 122346899999988654
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-13 Score=153.63 Aligned_cols=119 Identities=19% Similarity=0.286 Sum_probs=98.5
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC-----EEEeeccccCC-CCCccccEEEEEEeCCC-ceEEEEEE
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN-----KWIRTRTILDT-LDPRWNEQYTWEVYDPC-TVITIGVF 436 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~-----~~~~T~~~~~t-~nP~wne~~~f~v~~~~-~~l~i~V~ 436 (782)
..+.|+|+|++|++|++++.. ..+. ||||+|.+.+ .+.||++++++ +||+|||+|+|.+..+. ..|+|+||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~-~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~ 573 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKN-KNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE 573 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSC-SSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred cceEEEEEEEEcCCCCccccc-ccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEE
Confidence 568999999999999977531 2456 9999999944 68999999998 99999999999998763 68999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCc-cccEEEEEEEE
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLK-KNGELHLALRF 495 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~~ 495 (782)
|+|.++ +|++||++.|+|..|..|. +|++|.+.. |.. ..|+|.+.+++
T Consensus 574 D~D~~~------~dd~iG~~~ipl~~L~~G~---r~v~L~d~~--g~~~~~~~L~v~i~~ 622 (624)
T 1djx_A 574 DYDSSS------KNDFIGQSTIPWNSLKQGY---RHVHLLSKN--GDQHPSATLFVKISI 622 (624)
T ss_dssp ECCSSS------CCEEEEEEEEEGGGBCCEE---EEEEEECTT--SCEEEEEEEEEEEEE
T ss_pred EcCCCC------CCceeEEEEEEHHHcCCCc---EEEeCCCCC--cCCCCceEEEEEEEE
Confidence 999876 8999999999999998764 699997643 322 35788887766
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-13 Score=152.98 Aligned_cols=100 Identities=21% Similarity=0.353 Sum_probs=13.0
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeccccCC---CCCeeccEEEEEeccCCCCeEEEEEEeC-C--
Q 045512 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-KGIAKHLEKN---QNPVWNQIFAFSKERLQSNLVEVTVKDK-D-- 111 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~i~~t---~nP~wne~f~f~~~~~~~~~L~v~V~d~-d-- 111 (782)
.+.|.|+|++|++|+++| ||||+++++++ ..||+++++| +||+|||+|.|.+... ...|.|+|||. |
T Consensus 10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~d~~ 83 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDSDKK 83 (483)
T ss_dssp EECC--------------------------------------------------CCEECC--------------------
T ss_pred ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecCCcc
Confidence 357999999999999877 99999999986 6799999999 9999999999986543 57899999995 4
Q ss_pred -CC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 112 -IG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 112 -~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
.. +|++||++.|++.++..+. ..++||+|.++.
T Consensus 84 ~~~~~d~~lG~v~i~l~~l~~~~-----~~~~W~~L~~~~ 118 (483)
T 3bxj_A 84 RKKDKAGYVGLVTVPVATLAGRH-----FTEQWYPVTLPT 118 (483)
T ss_dssp ----------------------------CCEECC------
T ss_pred ccCCCCceEEEEEEEHHHhcCCC-----CCCeEEECCCCC
Confidence 24 8999999999999998653 267999996544
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-12 Score=145.73 Aligned_cols=107 Identities=23% Similarity=0.300 Sum_probs=94.6
Q ss_pred CceEEEEEEEEEeeCCCC---CCCCCCCCcEEEEEECC---eeeecccccCCCCCCcccceeEEEecCCCCCeEEEEEEE
Q 045512 199 PKLYYLRVFVFEAQDLVP---SEEGRAPDAYVKIQLGN---LVRVTRPSHVRSVNPVWNEEHMFVASEPFEDLIIVTVED 272 (782)
Q Consensus 199 p~~~~L~V~V~~a~~L~~---~d~~g~~dpyv~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d 272 (782)
+..+.|+|+|++|++|+. +|..|.+||||++.+++ ++++|+++++ +.||+|||+|.|.+.......|.|+|||
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~-tlNPvWNEtF~F~v~~~~~~~L~~~V~D 93 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPNQENVLEITLMD 93 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTTSCCBCEEEEEE
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcC-CCCCeeeeEEEEEecCCCCCEEEEEEEE
Confidence 456789999999999998 78888999999999984 6889999987 9999999999999987667789999999
Q ss_pred ccCCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 273 RIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 273 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
+|..+ |++||++.++|.++... .....|++|.+.
T Consensus 94 ~D~~~-ddfIG~v~I~L~~L~~g-----~~~~~w~~L~~~ 127 (749)
T 1cjy_A 94 ANYVM-DETLGTATFTVSSMKVG-----EKKEVPFIFNQV 127 (749)
T ss_dssp CCSSS-CEEEEEECCBSTTSCTT-----CCCCEEEEETTT
T ss_pred CCCCC-CceeEEEEEEHHHcCCC-----CceEEEEecCCC
Confidence 99988 99999999999998642 246789999865
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.8e-11 Score=139.98 Aligned_cols=112 Identities=17% Similarity=0.247 Sum_probs=94.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeccccC-CCCCeecc-EEEEE-eccCCCCeEEEEEEeC
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGIAKHLEK-NQNPVWNQ-IFAFS-KERLQSNLVEVTVKDK 110 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~i~~-t~nP~wne-~f~f~-~~~~~~~~L~v~V~d~ 110 (782)
..|.|+|++|++|+.. .+||||+|.+.+ .+++|+++.+ +.||+||| +|.|. +..+....|+|+|||+
T Consensus 725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~ 800 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE 800 (885)
T ss_dssp EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence 3799999999999853 689999999965 3579999986 59999999 69998 6655567899999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc
Q 045512 111 DIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT 166 (782)
Q Consensus 111 d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (782)
| +++||++.++|..|..+ -++.+|.+..|.....|.|.+.+.+..
T Consensus 801 d---ddfiG~~~lpL~~L~~G--------yR~vpL~~~~g~~l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 801 G---GKFVGHRILPVSAIRSG--------YHYVCLRNEANQPLCLPALLIYTEASD 845 (885)
T ss_dssp T---TEEEEEEEEETTTCCCE--------EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred C---ccEEeeEEEEHHHcCCC--------ceEEEecCCCCCccCceEEEEEEEEEe
Confidence 7 89999999999999764 357899999888755599999998764
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.21 E-value=7.5e-11 Score=137.71 Aligned_cols=112 Identities=16% Similarity=0.264 Sum_probs=95.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeccccC-CCCCeeccE-EEEE-eccCCCCeEEEEEEe
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-------YKGIAKHLEK-NQNPVWNQI-FAFS-KERLQSNLVEVTVKD 109 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-------~~~~T~~i~~-t~nP~wne~-f~f~-~~~~~~~~L~v~V~d 109 (782)
+.|.|+|++|++|+.+ .+||||+|.+.+ ++++|+++++ +.||+|||+ |.|. +..++...|+|.|||
T Consensus 650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D 725 (816)
T 3qr0_A 650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE 725 (816)
T ss_dssp EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence 5899999999999853 689999999975 5679999986 589999998 9998 765556789999999
Q ss_pred CCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc
Q 045512 110 KDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT 166 (782)
Q Consensus 110 ~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (782)
++ +++||++.++|..|..+ -++.+|.+..|.....+.|.+.+.+..
T Consensus 726 ~d---ddfiG~~~ipL~~L~~G--------yR~vpL~~~~g~~~~~atLfv~i~~~~ 771 (816)
T 3qr0_A 726 EN---GKFIGHRVMPLDGIKPG--------YRHVPLRNESNRPLGLASVFAHIVAKD 771 (816)
T ss_dssp TT---SCEEEEEEEESTTCCCE--------EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred cC---CCeeeEEEEEHHHcCCc--------ceEEEEeCCCCCCCCceEEEEEEEEEe
Confidence 85 79999999999999764 367899999888765589988887763
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-11 Score=142.11 Aligned_cols=105 Identities=31% Similarity=0.570 Sum_probs=92.0
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeccccCCCCCeeccEEEEEeccC-CCCeEEEEEEeCCC
Q 045512 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPVWNQIFAFSKERL-QSNLVEVTVKDKDI 112 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~i~~t~nP~wne~f~f~~~~~-~~~~L~v~V~d~d~ 112 (782)
.+.|.|+|++|++|+.+|..|.+||||++++ +..+.+|+++++|+||+|||+|.|.+... ....|.|+|||+|.
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~ 250 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL 250 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence 4689999999999999999999999999999 33578999999999999999999998643 24569999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 113 G-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 113 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
. +|++||++.+++.++.... ...|+.|....
T Consensus 251 ~~~dd~iG~~~i~l~~l~~~~------~~~w~~Lls~~ 282 (674)
T 3pfq_A 251 TSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE 282 (674)
T ss_dssp SSCCEECCBCCCBTTHHHHCC------EEEEEECBCTT
T ss_pred ccccccccccccchhhhccCC------cccceeecccc
Confidence 9 9999999999999997643 47899997654
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=136.56 Aligned_cols=111 Identities=20% Similarity=0.274 Sum_probs=91.7
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeec-cccC-CCCCeecc-EEEE-EeccCCCCeEEEEEE
Q 045512 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGIAK-HLEK-NQNPVWNQ-IFAF-SKERLQSNLVEVTVK 108 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~-~i~~-t~nP~wne-~f~f-~~~~~~~~~L~v~V~ 108 (782)
.+.|.|+|++|++|+. +.+||||+|.+.+ ++++|+ ++++ +.||+||| +|.| .+..+....|+|.||
T Consensus 677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~ 752 (799)
T 2zkm_X 677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM 752 (799)
T ss_dssp CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence 4689999999999984 4689999999943 367999 8875 68999999 6999 776555578999999
Q ss_pred eCCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 109 DKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 109 d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
|++ +++||++.++|..|..+ -+|++|.+..|.....+.|.+.+.+
T Consensus 753 D~d---~d~iG~~~ipl~~L~~G--------~r~v~L~~~~g~~~~~~~Lfv~i~~ 797 (799)
T 2zkm_X 753 EEG---NKFLGHRIIPINALNSG--------YHHLCLHSESNMPLTMPALFIFLEM 797 (799)
T ss_dssp ETT---TEEEEEEEEEGGGBCCE--------EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred EeC---CCccceEeeehhhcCCC--------cEEEeccCCCCCCCCceEEEEEEEE
Confidence 997 89999999999999753 3689999888876445788887755
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=135.44 Aligned_cols=103 Identities=23% Similarity=0.418 Sum_probs=89.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE-----CCEEEeeccccCCCCCccccEEEEEEeC--CCceEEEEEEe
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKY-----GNKWIRTRTILDTLDPRWNEQYTWEVYD--PCTVITIGVFD 437 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~~~~~~T~~~~~t~nP~wne~~~f~v~~--~~~~l~i~V~d 437 (782)
.+.|.|.|++|++|.++|. .|. ||||++.+ ...+.+|+++++++||.|||.|.|.+.. ....|.|+|||
T Consensus 171 ~~~L~V~v~~a~~L~~~d~---~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d 247 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDP---NGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWD 247 (674)
T ss_dssp SSEEEEEEEEEESCCCCST---TSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEE
T ss_pred cceeeeeeecccccCCCCc---ccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEee
Confidence 3789999999999998764 366 99999999 4467899999999999999999999874 34579999999
Q ss_pred CCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceee
Q 045512 438 NCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVL 478 (782)
Q Consensus 438 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 478 (782)
+|.++ +|++||.+.++++++..+. ...|++|...
T Consensus 248 ~d~~~------~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~ 281 (674)
T 3pfq_A 248 WDLTS------RNDFMGSLSFGISELQKAG-VDGWFKLLSQ 281 (674)
T ss_dssp CCSSS------CCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred ccccc------ccccccccccchhhhccCC-cccceeeccc
Confidence 99876 8999999999999997765 4899999763
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.05 E-value=8.9e-10 Score=128.69 Aligned_cols=110 Identities=21% Similarity=0.284 Sum_probs=88.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEECC-------EEEeeccccC-CCCCccccE-EEEE-EeCC-CceEEEE
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGN-------KWIRTRTILD-TLDPRWNEQ-YTWE-VYDP-CTVITIG 434 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~-------~~~~T~~~~~-t~nP~wne~-~~f~-v~~~-~~~l~i~ 434 (782)
.+.|.|+|++|++|+.. ..||||+|++.+ +++||+++++ ++||+|||+ |+|. |..+ ...|+|.
T Consensus 649 ~~~L~V~Visaq~L~~~------~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~ 722 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK------QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRII 722 (816)
T ss_dssp CEEEEEEEEEEECCCSS------CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEE
T ss_pred ceEEEEEEEEcccCCCC------CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEE
Confidence 47899999999999731 239999999965 6789999986 599999998 9998 7654 3589999
Q ss_pred EEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCc-cccEEEEEEEEE
Q 045512 435 VFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLK-KNGELHLALRFT 496 (782)
Q Consensus 435 V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~~~ 496 (782)
|||++ +++||++.|+|+.|..|. +++||.+.. |.. ..++|.+.+.+.
T Consensus 723 V~D~d----------ddfiG~~~ipL~~L~~Gy---R~vpL~~~~--g~~~~~atLfv~i~~~ 770 (816)
T 3qr0_A 723 VSEEN----------GKFIGHRVMPLDGIKPGY---RHVPLRNES--NRPLGLASVFAHIVAK 770 (816)
T ss_dssp EEETT----------SCEEEEEEEESTTCCCEE---EEEEEECTT--SCEEEEEEEEEEEEEE
T ss_pred EEecC----------CCeeeEEEEEHHHcCCcc---eEEEEeCCC--CCCCCceEEEEEEEEE
Confidence 99974 689999999999998874 578998643 322 237888887765
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.6e-10 Score=130.42 Aligned_cols=110 Identities=19% Similarity=0.291 Sum_probs=87.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEECC------EEEeeccccC-CCCCcccc-EEEEE-EeCC-CceEEEEE
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGN------KWIRTRTILD-TLDPRWNE-QYTWE-VYDP-CTVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~-t~nP~wne-~~~f~-v~~~-~~~l~i~V 435 (782)
...|.|+|++|++|+. ...||||+|.+.+ .++||+++++ ++||+||| .|.|. |..+ ...|+|+|
T Consensus 724 ~~~L~V~Visaq~L~~------~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V 797 (885)
T 3ohm_B 724 ANALRVKVISGQFLSD------RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAA 797 (885)
T ss_dssp CEEEEEEEEEEESCCS------SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEE
T ss_pred ceEEEEEEEEeccCcc------cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEE
Confidence 3589999999999973 1249999999954 3579999987 59999999 69998 6554 35899999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCc-cccEEEEEEEEE
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLK-KNGELHLALRFT 496 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~~~ 496 (782)
||+| |++||++.|+|+.|..|. +++||.+.. |.. ..|.|.+.+.+.
T Consensus 798 ~D~d----------ddfiG~~~lpL~~L~~Gy---R~vpL~~~~--g~~l~~atLfv~i~~~ 844 (885)
T 3ohm_B 798 FEEG----------GKFVGHRILPVSAIRSGY---HYVCLRNEA--NQPLCLPALLIYTEAS 844 (885)
T ss_dssp EETT----------TEEEEEEEEETTTCCCEE---EEEEEECTT--SCEEEEEEEEEEEEEE
T ss_pred EcCC----------ccEEeeEEEEHHHcCCCc---eEEEecCCC--CCccCceEEEEEEEEE
Confidence 9975 689999999999998874 468887643 322 358899988875
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=128.08 Aligned_cols=111 Identities=16% Similarity=0.303 Sum_probs=85.9
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEECC------EEEeec-cccC-CCCCcccc-EEEE-EEeCC-CceEEE
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGN------KWIRTR-TILD-TLDPRWNE-QYTW-EVYDP-CTVITI 433 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~~------~~~~T~-~~~~-t~nP~wne-~~~f-~v~~~-~~~l~i 433 (782)
..|.|.|+|++|++|+. ...||||+|.+.+ +++||+ ++++ ++||+||| .|.| .|..+ ...|+|
T Consensus 676 ~~~~L~V~Visa~~L~~------~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~ 749 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE------RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRV 749 (799)
T ss_dssp TCEEEEEEEEEEESCCS------SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEE
T ss_pred eeeeEEEEEEeccccCc------cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEE
Confidence 46799999999999983 1239999999932 367999 8875 59999999 6999 78654 348999
Q ss_pred EEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 434 GVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 434 ~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.|||++ +++||++.|+|+.|..|. +|++|.+..... -..+.|.+.+++
T Consensus 750 ~V~D~d----------~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~-~~~~~Lfv~i~~ 797 (799)
T 2zkm_X 750 AVMEEG----------NKFLGHRIIPINALNSGY---HHLCLHSESNMP-LTMPALFIFLEM 797 (799)
T ss_dssp EEEETT----------TEEEEEEEEEGGGBCCEE---EEEEEECTTCCE-EEEEEEEEEEEE
T ss_pred EEEEeC----------CCccceEeeehhhcCCCc---EEEeccCCCCCC-CCceEEEEEEEE
Confidence 999975 689999999999998763 588987643211 124777777665
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-08 Score=88.25 Aligned_cols=113 Identities=14% Similarity=0.261 Sum_probs=87.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe----eeee-ccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCC
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY----KGIA-KHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGK 114 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~----~~~T-~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~ 114 (782)
..|+|.+.++.--+-+......||||.|.+... +.+| .+.++|..|+|||.|.-.+.+ +..|.|.|++...
T Consensus 6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~-- 81 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE-- 81 (126)
T ss_dssp CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT--
T ss_pred ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC--
Confidence 478999988765333333457899999999863 3465 788899999999999999888 6889999997654
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 115 DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
+|++.|.|.+.+|..+-........-|..|++. |.|++.+.+
T Consensus 82 -~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP~-------Gkl~~~i~~ 123 (126)
T 1yrk_A 82 -EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ-------AKVLMSVQY 123 (126)
T ss_dssp -EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSS-------CEEEEEEEE
T ss_pred -CeeeEEEEEHHHHHhhhccCCCceEEEEecccC-------cEEEEEEEE
Confidence 999999999999985411111246789999862 899988854
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.80 E-value=7.6e-08 Score=83.61 Aligned_cols=105 Identities=16% Similarity=0.344 Sum_probs=82.1
Q ss_pred eEEEEEEEEee--CCCCCCCCCCCCC-CcEEEEEECCEE----Eee-ccccCCCCCccccEEEEEEeCCCceEEEEEEeC
Q 045512 367 GILELGILSAK--NLMPMTSKDGKLT-DAYCVAKYGNKW----IRT-RTILDTLDPRWNEQYTWEVYDPCTVITIGVFDN 438 (782)
Q Consensus 367 g~l~v~v~~a~--~L~~~~~~~~~~~-dpyv~v~~~~~~----~~T-~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~ 438 (782)
..|+|...++. .|++. ... ||||.|.+.... .+| .++++|..|.|||.|.-.|.+ ...|.|.||+.
T Consensus 6 ~flRi~~~~~~~~~~~~~-----~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~ 79 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAE-----DEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRA 79 (126)
T ss_dssp CEEEEEEEEEECSSCCCS-----SSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEE
T ss_pred ccEEeeeccccccccCCc-----cccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcC
Confidence 57788775555 23321 123 999999986533 265 788899999999999999886 57999999975
Q ss_pred CCCCCCCCCcCCCccEEEEEeccccc-----CCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 439 CHVNGSKDDAIDQRIGKVRIRLSTLE-----TDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
. .++++.+.|++.+|. .+...+-|++|.. .|+|++.+++
T Consensus 80 a----------~~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP--------~Gkl~~~i~~ 123 (126)
T 1yrk_A 80 A----------EEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP--------QAKVLMSVQY 123 (126)
T ss_dssp T----------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--------SCEEEEEEEE
T ss_pred C----------CCeeeEEEEEHHHHHhhhccCCCceEEEEeccc--------CcEEEEEEEE
Confidence 3 389999999999996 4567889999964 6999999886
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-08 Score=89.34 Aligned_cols=114 Identities=17% Similarity=0.406 Sum_probs=89.0
Q ss_pred cEEEEEEEEeecCCCCC-CCCCCCcEEEEEECCe----eeee-ccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC
Q 045512 40 HYLFVNVVKARNLPVMD-VSGSLDPYVEVKLGNY----KGIA-KHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG 113 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~~----~~~T-~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~ 113 (782)
..|+|.+.++.--+.+. .....||||.|.+... +.+| .+.++|..|+|||.|.-.+.+ +..|.|.|++...
T Consensus 10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~- 86 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKNV- 86 (138)
T ss_dssp CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSSC-
T ss_pred cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCCC-
Confidence 47999998887655432 2357899999999863 3678 778889999999999999888 6889999996654
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 114 KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
+|++.|.|.+.+|..+-........-|+.|++. |.|++.+.+.
T Consensus 87 --~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP~-------Gkl~v~i~~~ 129 (138)
T 2enj_A 87 --DLISETTVELYSLAERCRKNNGKTEIWLELKPQ-------GRMLMNARYF 129 (138)
T ss_dssp --SCCEEEEEESHHHHHHHHHTTTCEEEEEECBSS-------CEEEEEEEEC
T ss_pred --CeeeEEEEEHHHHHhhhccCCCceEEEEecccC-------cEEEEEEEEE
Confidence 899999999999985410001236899999862 9999998765
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.5e-08 Score=85.60 Aligned_cols=108 Identities=15% Similarity=0.197 Sum_probs=83.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-E---Eee-ccccCCCCCccccEEEEEEeCCCceEEEEEEeCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-W---IRT-RTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCH 440 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-~---~~T-~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~ 440 (782)
+.|+|...++.-.+-+.. .... ||||.|.+... . .+| .++++|..|.|||.|.-.|.+ ...|.|.||+..
T Consensus 10 ~flRi~l~~~~~~~~~~~--~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a- 85 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQSC--QGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKN- 85 (138)
T ss_dssp CCEEEEEEEEECCCCCCS--CCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSS-
T ss_pred cceEEEeeccccCCCCCc--ccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCC-
Confidence 577887766653221110 1124 99999998653 2 677 778889999999999999886 579999999643
Q ss_pred CCCCCCCcCCCccEEEEEeccccc-----CCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 441 VNGSKDDAIDQRIGKVRIRLSTLE-----TDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
.++++.+.|++.+|. .+...+-|++|.. .|+|++.+++
T Consensus 86 ---------~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP--------~Gkl~v~i~~ 128 (138)
T 2enj_A 86 ---------VDLISETTVELYSLAERCRKNNGKTEIWLELKP--------QGRMLMNARY 128 (138)
T ss_dssp ---------CSCCEEEEEESHHHHHHHHHTTTCEEEEEECBS--------SCEEEEEEEE
T ss_pred ---------CCeeeEEEEEHHHHHhhhccCCCceEEEEeccc--------CcEEEEEEEE
Confidence 389999999999996 4567789999964 6999999987
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=92.37 E-value=0.5 Score=42.92 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=84.7
Q ss_pred ccccccEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC--Ce-eeeeccccCCCCCeeccEEEEEecc-------CCCCeE
Q 045512 35 LVEQMHYLFVNVVKARNLPVMD-VSGSLDPYVEVKLG--NY-KGIAKHLEKNQNPVWNQIFAFSKER-------LQSNLV 103 (782)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~--~~-~~~T~~i~~t~nP~wne~f~f~~~~-------~~~~~L 103 (782)
+.+..+.+.|+|.++.--+..- ..+..+|..-+++. +. ...|.++. +.+|.+|-+-.|.+.. ++...+
T Consensus 13 l~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l 91 (156)
T 2yrb_A 13 LERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTI 91 (156)
T ss_dssp CCSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCE
T ss_pred ccCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCE
Confidence 3344568899999987422211 12345776666654 54 44555554 8999999999998742 235689
Q ss_pred EEEEEeCCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc
Q 045512 104 EVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT 166 (782)
Q Consensus 104 ~v~V~d~d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (782)
.++++......-..||.+.|+|.++..+.. ....-.+|....|.....|.|...+.+..
T Consensus 92 ~lELhqa~g~~~~tla~~~I~l~~lLe~~~----~i~g~~~L~g~~g~~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 92 TLEVHQAYSTEYETIAACQLKFHEILEKSG----RIFCTASLIGTKGDIPNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEEEECSSCEEEEEEEEECCSHHHHCCS----CEEEEEEECBSSSCCTTSEEEEEEEEEEE
T ss_pred EEEEEEeeCCCceEEEEEEEEhHHhhCcCC----ceEEEEEEEcCCCCcceEEEEEEEEEEec
Confidence 999988865466899999999999986532 13344578777764223499888876653
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=86.14 E-value=3.5 Score=48.96 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=51.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEec---cCCCCeEEEEEEeC
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGIAKHLEKNQNPVWNQIFAFSKE---RLQSNLVEVTVKDK 110 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~i~~t~nP~wne~f~f~~~---~~~~~~L~v~V~d~ 110 (782)
..+.|+|..+.++... ..++-||.+.+ |++ ...|+.+....+|.|||.+.|++. -+.+..|.|.||+.
T Consensus 217 ~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~ 293 (940)
T 2wxf_A 217 QPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAV 293 (940)
T ss_dssp SEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEE
T ss_pred CceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEe
Confidence 3799999999999764 34677877665 553 345666666789999999999863 34578999999996
Q ss_pred C
Q 045512 111 D 111 (782)
Q Consensus 111 d 111 (782)
.
T Consensus 294 ~ 294 (940)
T 2wxf_A 294 V 294 (940)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.44 E-value=8.7 Score=36.93 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=48.9
Q ss_pred eeeeccccCCCCCeeccEEEEEec--cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 73 KGIAKHLEKNQNPVWNQIFAFSKE--RLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 73 ~~~T~~i~~t~nP~wne~f~f~~~--~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
.++|.|.+.+.+|.|+|++.+.+. .....-|.|.++....- +.+ ..+....-.|.+|....
T Consensus 78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~d----------------k~E~pfg~a~lPL~~~d 141 (220)
T 3l4c_A 78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKD----------------KSEKIFALAFVKLMRYD 141 (220)
T ss_dssp CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCC----------------CCCCEEEEEEEESBCTT
T ss_pred eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEeccccccc----------------ccCCeeEEEEEEcccCC
Confidence 567888889999999999998865 34467899999886542 100 01112334567776655
Q ss_pred CCcccceEEEEEEEE
Q 045512 150 GDKITQGEIMLAVWI 164 (782)
Q Consensus 150 ~~~~~~G~l~l~~~~ 164 (782)
|.....|.-.|-++-
T Consensus 142 G~~L~DG~H~L~vyk 156 (220)
T 3l4c_A 142 GTTLRDGEHDLIVYK 156 (220)
T ss_dssp SCBCCSEEEEEEEEE
T ss_pred CcEEccCCEEEEEEE
Confidence 543223777776644
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=84.84 E-value=5.5 Score=47.70 Aligned_cols=107 Identities=14% Similarity=0.215 Sum_probs=70.4
Q ss_pred EecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEec---cCCCCe
Q 045512 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL--GNY----KGIAKHLEKNQNPVWNQIFAFSKE---RLQSNL 102 (782)
Q Consensus 32 ~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~i~~t~nP~wne~f~f~~~---~~~~~~ 102 (782)
.+++.+ .++|+|..+.++.... ....+-||.+.+ |++ ..+|+.+. ..+|.|||.+.|++. -+....
T Consensus 350 lw~~~~---~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~ar 424 (1091)
T 3hhm_A 350 LWVINS---ALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAAR 424 (1091)
T ss_dssp GGGCCS---EEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCE
T ss_pred hhhCCC---CEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcE
Confidence 345543 7899999999887543 345677888777 443 34555444 467889999999863 345789
Q ss_pred EEEEEEeCCCC-----CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 103 VEVTVKDKDIG-----KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 103 L~v~V~d~d~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
|.|.||+.... ....||-+.++|-+.. |.-. .|...+.+|-
T Consensus 425 L~~tl~~~~~~~~~~~~~~~lg~~n~~lfd~~--------------------~~L~-~G~~~L~lW~ 470 (1091)
T 3hhm_A 425 LCLSICSVKGRKGAKEEHCPLAWGNINLFDYT--------------------DTLV-SGKMALNLWP 470 (1091)
T ss_dssp EEEEECCCCCCC-------CCEEEEEESBCTT--------------------CBBC-CEEEEEECEE
T ss_pred EEEEEEEecCccCcccccceeEEeeeeeEccC--------------------CeEE-cCCeEEEeec
Confidence 99999997653 1235666666655432 2212 3888888885
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=82.40 E-value=4.7 Score=36.56 Aligned_cols=125 Identities=12% Similarity=0.163 Sum_probs=77.9
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCCCc--EEEEEECCEEEeeccccCCCCCccccEEEEEEeCC--------CceEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLTDA--YCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDP--------CTVITI 433 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~dp--yv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~--------~~~l~i 433 (782)
+.-+.++|.|.++. +.+......+..+| ||.+.+-.....+..+....+|.+|-+-.+.|.-. ...+.|
T Consensus 15 ~gEnlfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~l 93 (156)
T 2yrb_A 15 RGENLFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTITL 93 (156)
T ss_dssp SSCEEEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEESSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred CCCcEEEEEEeEEE-EcHHHHhhccccCCcEEEEEEEeceEeeecccccCCCCCcceEEEEEEEeCHHHHHHHhcCCEEE
Confidence 44578888888876 32210000011244 55555545444444444589999999888888521 236888
Q ss_pred EEEeCCCCCCCCCCcCCCccEEEEEeccccc-CCcEEEEEEEceeeCCCCCccccEEEEEEEEEE
Q 045512 434 GVFDNCHVNGSKDDAIDQRIGKVRIRLSTLE-TDRLYTHYYPLLVLTPSGLKKNGELHLALRFTC 497 (782)
Q Consensus 434 ~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~ 497 (782)
++..... ..-..||+++|+|.++. ....+....+|.+... +...-|.|...+++..
T Consensus 94 ELhqa~g-------~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g-~~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 94 EVHQAYS-------TEYETIAACQLKFHEILEKSGRIFCTASLIGTKG-DIPNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEECS-------SCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSS-CCTTSEEEEEEEEEEE
T ss_pred EEEEeeC-------CCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCC-CcceEEEEEEEEEEec
Confidence 8887542 25678999999999985 3444556677876432 1124699999998854
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=81.36 E-value=5.7 Score=47.15 Aligned_cols=92 Identities=12% Similarity=0.257 Sum_probs=61.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCCCcEEEEEE--CCEE----EeeccccCCCCCccccEEEEEEe--C-C-CceEEEEEE
Q 045512 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAKY--GNKW----IRTRTILDTLDPRWNEQYTWEVY--D-P-CTVITIGVF 436 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~t~nP~wne~~~f~v~--~-~-~~~l~i~V~ 436 (782)
..++|+|..+.++...+ ..+-||.+.+ |++. ..|..+....+|.|||.++|++. + | ...|.|+||
T Consensus 217 ~~f~i~i~~~~~~~~~~-----~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~ 291 (940)
T 2wxf_A 217 QPFSIELIEGRKVNADE-----RMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY 291 (940)
T ss_dssp SEEEEEEEEEECCCC--------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred CceEEEEEEecccCCCC-----CceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence 57999999999986321 1277877755 6654 45555555778999999999887 3 3 678999999
Q ss_pred eCCCC--C---CC-CCCcCCCccEEEEEecccc
Q 045512 437 DNCHV--N---GS-KDDAIDQRIGKVRIRLSTL 463 (782)
Q Consensus 437 d~~~~--~---~~-~~~~~d~~lG~~~i~l~~l 463 (782)
+...- + .+ +....+..||.+.++|-+-
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~ 324 (940)
T 2wxf_A 292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDY 324 (940)
T ss_dssp EEC----------------CEEEEEEEEESBCT
T ss_pred EecCCccCccccccccccccceEEEEeeeEECC
Confidence 96431 1 00 0111345999999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 782 | ||||
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 2e-21 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 3e-15 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 1e-06 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 5e-21 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 2e-11 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 2e-10 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 6e-21 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 8e-15 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 5e-10 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 1e-19 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 4e-13 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 5e-13 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 3e-18 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 2e-09 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 5e-07 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 6e-18 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 4e-16 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 3e-12 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 7e-18 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 1e-08 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 2e-07 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 1e-17 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 2e-12 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 4e-10 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 3e-17 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 3e-11 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 5e-11 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 6e-17 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 1e-08 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 1e-04 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 2e-16 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 9e-10 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 8e-16 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 2e-08 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 5e-06 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 9e-15 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 7e-06 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 9e-05 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 3e-13 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 1e-04 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 3e-13 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 6e-09 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 8e-07 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 1e-12 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 1e-10 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 5e-06 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 2e-11 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 3e-10 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 4e-08 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 2e-10 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 5e-07 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 6e-10 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 3e-06 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 3e-06 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 2e-04 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.3 bits (218), Expect = 2e-21
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 36 VEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSK 95
V+ + L V V+KA +L D SG DP+ ++LGN + + KN NP WN++F F
Sbjct: 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61
Query: 96 ERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKIT 154
+ + +EVTV D+D DF+G+V L + P Y L+++ ++
Sbjct: 62 KDIHDV-LEVTVFDEDGDKPPDFLGKVAIPLLSIR-------DGQPNCYVLKNKDLEQAF 113
Query: 155 QGEIMLAV 162
+G I L +
Sbjct: 114 KGVIYLEM 121
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (172), Expect = 3e-15
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Query: 366 IGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVY 425
+GIL++ +L A +L+ +D +C+ + GN ++T T+ L+P WN+ +T+ +
Sbjct: 5 VGILQVKVLKAADLLAA--DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIK 62
Query: 426 DPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKK 485
D V+ + VFD +GKV I L ++ + + Y L
Sbjct: 63 DIHDVLEVTVFDEDGDK------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AF 113
Query: 486 NGELHLALRF 495
G ++L +
Sbjct: 114 KGVIYLEMDL 123
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (108), Expect = 1e-06
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 203 YLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPF 262
L+V V +A DL+ ++ D + ++LGN T +++NP WN+ F +
Sbjct: 7 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHT-VYKNLNPEWNKVFTFPIKDIH 65
Query: 263 EDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLS 315
D++ VTV D G + LG+ IP+ ++ P + L L
Sbjct: 66 -DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ-------PNCYVLKNKDLE 110
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.1 bits (215), Expect = 5e-21
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 40 HYLFVNVVKARNLP---VMDVSGSLDPYVEVKLG---NYKGIAKHLEKNQNPVWNQIFAF 93
H V V++A + D+ + DPYVE+ + + + +H + NPVWN+ F F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 94 SKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKI 153
+ Q N++E+T+ D + D+ +G TF + + + +
Sbjct: 63 ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE-----VPFIFNQV----- 112
Query: 154 TQGEIMLAV 162
T+ + +++
Sbjct: 113 TEMVLEMSL 121
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.7 bits (144), Expect = 2e-11
Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 365 SIGILELGILSAKNLMPMTSKD-GKLTDAYCVAKYG---NKWIRTRTILDTLDPRWNEQY 420
S + +L A + D D Y + RTR + ++P WNE +
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60
Query: 421 TWEVYDPCT-VITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLT 479
+ + V+ I + D + +D+ +G +S+++ +
Sbjct: 61 EFILDPNQENVLEITLMD-------ANYVMDETLGTATFTVSSMKVGEKKEVPFIF---- 109
Query: 480 PSGLKKNGELHLALRFT 496
L ++L
Sbjct: 110 --NQVTEMVLEMSLEVA 124
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (137), Expect = 2e-10
Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 11/117 (9%)
Query: 202 YYLRVFVFEAQDLVPSEEG---RAPDAYVKIQLGNLV--RVTRPSHVRSVNPVWNEEHMF 256
+ V V A + G PD YV++ + R +NPVWNE F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 257 VASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPS 313
+ E+++ +T+ D DE LG V ++ + F ++ +
Sbjct: 63 ILDPNQENVLEITLMDA-NYVMDETLGTATFTVSSMKVGEKKEV-----PFIFNQVT 113
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 87.1 bits (215), Expect = 6e-21
Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 10/120 (8%)
Query: 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERL 98
M L V V KA+ + + YV +K+ N K + + P W Q F F RL
Sbjct: 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 56
Query: 99 QSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEI 158
L V V +K + D VG V L + + +W L+ + EI
Sbjct: 57 DLGLT-VEVWNKGLIWDTMVGTVWIPLRTIRQ---SNEEGPGEWLTLDSQAIMA--DSEI 110
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.8 bits (170), Expect = 8e-15
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 201 LYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASE 260
+ L V V +A+ E+ + YV +++ N+ T VR P W ++ MF +
Sbjct: 1 MSLLCVGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTI--AVRGSQPSWEQDFMFEINR 55
Query: 261 PFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGA 320
+ V V ++ G D ++G +IP+R + Q +E W L ++ A+
Sbjct: 56 LD-LGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEGP---GEWLTLDSQAIMADSEI 110
Query: 321 EKKKEKFSSKILIRFCLE 338
K+ +IL+ E
Sbjct: 111 CGTKDPTFHRILLDAHFE 128
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.9 bits (134), Expect = 5e-10
Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 18/133 (13%)
Query: 366 IGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVY 425
+ +L +G+ AK + Y K N T + P W + + +E+
Sbjct: 1 MSLLCVGVKKAKFDGAQEK-----FNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEIN 54
Query: 426 DPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTL--ETDRLYTHYYPLLVLTPSGL 483
+T+ V++ K D +G V I L T+ + + L +
Sbjct: 55 RLDLGLTVEVWN-------KGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLT---LDSQAI 104
Query: 484 KKNGELHLALRFT 496
+ E+ T
Sbjct: 105 MADSEICGTKDPT 117
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.2 bits (205), Expect = 1e-19
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPV 86
+D + H L V ++ A++LP + +PYV++ K K ++K P
Sbjct: 8 WFD--KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 65
Query: 87 WNQIFAF---SKERLQSNLVEVTVKDKD---IGKDDFVGRVTFDLFEVPHRVPPDSPLAP 140
WNQ F + + + ++E+T+ D+ + +F+G + +L P
Sbjct: 66 WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA------LLDDEP 119
Query: 141 QWYRLE 146
WY+L+
Sbjct: 120 HWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.7 bits (157), Expect = 4e-13
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCVA-----KYGNKWIRTRTILDTLDPRWNEQYT 421
L + IL AK+L +DG+ + Y + RT+T+ TL+P+WN+ +
Sbjct: 14 HQLIVTILGAKDLPSR--EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFI 71
Query: 422 WEVYDPCT----VITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475
+ ++ I ++D V + + +G++ I L T D H+Y L
Sbjct: 72 YSPVHRREFRERMLEITLWDQARVREEESEF----LGEILIELETALLDDE-PHWYKL 124
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.3 bits (156), Expect = 5e-13
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVR----SVNPV 249
K++F + L V + A+DL E+GR + YVKI + ++ P
Sbjct: 6 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 65
Query: 250 WNEEHMFVASEPFED---LIIVTV--EDRIGPGKDEILGREFIPVRNVPQRHETTKLPDP 304
WN+ ++ E ++ +T+ + R+ + E LG I + E P
Sbjct: 66 WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE------P 119
Query: 305 RWFNL 309
W+ L
Sbjct: 120 HWYKL 124
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 79.8 bits (196), Expect = 3e-18
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAF--S 94
L V V+KAR+LP DVSG DPYV+V L + K + N V+N++F F
Sbjct: 17 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 76
Query: 95 KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVP--------PDSPLAPQWYRL 145
E L+ VE V D + +++ +GR+ P +A +W+ L
Sbjct: 77 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KWHML 135
Query: 146 ED 147
D
Sbjct: 136 CD 137
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.9 bits (129), Expect = 2e-09
Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 17/128 (13%)
Query: 197 FSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVR----SVNPVWNE 252
+ L V V +A+ L S+ D YVK+ L + + + N V+NE
Sbjct: 10 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNE 69
Query: 253 EHMFVASEPFEDL----IIVTVEDRIGPGKDEILGREFIPVRNVPQ--RHETTKLPDPR- 305
+F P E L + V D ++E++GR + H PR
Sbjct: 70 LFVF--DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR 127
Query: 306 ----WFNL 309
W L
Sbjct: 128 QIAKWHML 135
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.4 bits (112), Expect = 5e-07
Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWI-----RTRTILDTLDPRWNEQYT 421
L + +L A++L L+D Y + +T T + +NE +
Sbjct: 15 NTLTVVVLKARHLPKSDV--SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFV 72
Query: 422 WEVYDP-CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476
+++ I++ GS+++ IG++ + + + H+ +
Sbjct: 73 FDIPCESLEEISVEFLVLDSERGSRNE----VIGRLVLGATAEGSG--GGHWKEIC 122
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 78.6 bits (193), Expect = 6e-18
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAK-HLEKNQNPVWNQIFAFSKERLQS 100
L V +V A+ L D ++DPYV++ + P WN+ F F+ +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 101 NLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIM 159
L + DKD +DD VG T L V + + P Y + + K GEI
Sbjct: 72 ELK-AKIFDKDVGTEDDAVGEATIPL----EPVFVEGSIPPTAYNVVKDEEYK---GEIW 123
Query: 160 LAV 162
+A+
Sbjct: 124 VAL 126
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 73.2 bits (179), Expect = 4e-16
Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 12/136 (8%)
Query: 362 RKGSIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTIL-DTLDPRWNEQY 420
G G LE+ ++SAK L D Y + ++ P WNE +
Sbjct: 5 SSGPHGTLEVVLVSAKGLEDADF--LNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETF 62
Query: 421 TWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTP 480
+ V + T + +FD G++DD +G+ I L + + +V
Sbjct: 63 IFTVSEGTTELKAKIFD--KDVGTEDD----AVGEATIPLEPVFVEGSIPPTAYNVV--- 113
Query: 481 SGLKKNGELHLALRFT 496
+ GE+ +AL F
Sbjct: 114 KDEEYKGEIWVALSFK 129
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 62.5 bits (151), Expect = 3e-12
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFE 263
L V + A+ L ++ D YV++ + + + P WNE +F SE
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-T 70
Query: 264 DLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPS 313
+ + D+ +D+ +G IP+ V P +N+ K
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSI----PPTAYNVVKDE 116
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 78.8 bits (193), Expect = 7e-18
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 23/132 (17%)
Query: 35 LVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL--------------GNYKGIAKHLE 80
+ + L +++++ARNL D +G DP+V+V L YK K+++
Sbjct: 13 INYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ 72
Query: 81 KNQNPVWNQIFAF---SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDS 136
K+ NP WNQ + S E+L +EVTV D D +DF+G V DL H
Sbjct: 73 KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN--- 129
Query: 137 PLAPQWYRLEDR 148
P+WY L+++
Sbjct: 130 --TPRWYPLKEQ 139
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.2 bits (124), Expect = 1e-08
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 21/126 (16%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHV-------------RSVNPVW 250
L + + +A++LVP + D +VK+ L +S+NP W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 251 NEEHMFV---ASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWF 307
N+ ++ + + + VTV D ++ LG I + + T PRW+
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNT-----PRWY 134
Query: 308 NLHKPS 313
L + +
Sbjct: 135 PLKEQT 140
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.7 bits (115), Expect = 2e-07
Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 22/128 (17%)
Query: 365 SIGILELGILSAKNLMPMTSKDGKLTDAYCV--------------AKYGNKWIRTRTILD 410
+G L + IL A+NL+P + +D + RT+ +
Sbjct: 16 DLGNLIIHILQARNLVPRDN--NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK 73
Query: 411 TLDPRWNEQYTWEVYDPCTVI--TIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRL 468
+L+P WN+ ++ ++ T+ V + S +D +G+V I LS+
Sbjct: 74 SLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSND----FLGEVLIDLSSTSHLDN 129
Query: 469 YTHYYPLL 476
+YPL
Sbjct: 130 TPRWYPLK 137
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 77.8 bits (191), Expect = 1e-17
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIA-----KHLEKNQNPVWNQIFAFS-K 95
L V V A+NL MD +G DPYV++KL K ++ + NP WN+ F F K
Sbjct: 17 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 76
Query: 96 ERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149
E + + V + D D ++DF+G ++F + E+ W++L ++
Sbjct: 77 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQE 125
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.8 bits (152), Expect = 2e-12
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 24/130 (18%)
Query: 362 RKGSI--------GILELGILSAKNLMPMTSKDGKLTDAYCVAKY-----GNKWIRTRTI 408
R+G I +L + + AKNL+PM L+D Y K +T+TI
Sbjct: 2 RRGRIYIQAHIDREVLIVVVRDAKNLVPMDP--NGLSDPYVKLKLIPDPKSESKQKTKTI 59
Query: 409 LDTLDPRWNEQYTWEVYDP--CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETD 466
+L+P WNE + +++ + +++ ++D S++D +G + +S L+
Sbjct: 60 KCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT--SRND----FMGSLSFGISELQKA 113
Query: 467 RLYTHYYPLL 476
+ ++ LL
Sbjct: 114 GV-DGWFKLL 122
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.2 bits (135), Expect = 4e-10
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVR----VTRPSHVRSVNPVWNEEHMFVAS 259
L V V +A++LVP + D YVK++L + + S+NP WNE F
Sbjct: 17 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 76
Query: 260 EPFED-LIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEE 318
E +D + V + D +++ +G + + + WF L LS EE
Sbjct: 77 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVD------GWFKL----LSQEE 126
Query: 319 G 319
G
Sbjct: 127 G 127
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 76.7 bits (188), Expect = 3e-17
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGI---AKHLEKNQNPVWN 88
YD L V +++A LP +D+ G+ DPYV+V L K K K NPV+N
Sbjct: 28 DYDFQNNQ--LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 85
Query: 89 QIFAF--SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRL 145
+ F F L + + V D D K D +G + V + +W L
Sbjct: 86 EQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV-----DFGHVTEEWRDL 140
Query: 146 E 146
+
Sbjct: 141 Q 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.8 bits (144), Expect = 3e-11
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYC---VAKYGNKWIRTRTILDTLDPRWNEQYTWE 423
L +GI+ A L + G +D Y + K T+ TL+P +NEQ+T++
Sbjct: 34 NQLLVGIIQAAELPALDM--GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK 91
Query: 424 VYDPC---TVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476
V + + V+D SK D IG+ ++ ++T++ + + L
Sbjct: 92 VPYSELGGKTLVMAVYDFDRF--SKHD----IIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.0 bits (142), Expect = 5e-11
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHV--RSVNPVWN 251
+ + + L V + +A +L + G D YVK+ L + + V +++NPV+N
Sbjct: 26 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 85
Query: 252 EEHMF--VASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNL 309
E+ F SE +++ V D K +I+G +P+ V H T + W +L
Sbjct: 86 EQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE-----WRDL 140
Query: 310 H 310
Sbjct: 141 Q 141
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 76.4 bits (187), Expect = 6e-17
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 22/137 (16%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIA-----KHLEKNQNPVWNQIFAF--S 94
L V +++A+NL MDV G DPYV++ L + NP +N+ F+F
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 95 KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRV--------PPDSPLAPQWYRL 145
E++Q V VTV D D IGK+D +G+V + P P+A QW+ L
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 145
Query: 146 EDRKGDKITQGEIMLAV 162
+ + + + MLAV
Sbjct: 146 QVEE-----EVDAMLAV 157
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.9 bits (126), Expect = 1e-08
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 197 FSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVR----SVNPVWNE 252
+ P L V + EA++L + G D YVKI L + + ++NP +NE
Sbjct: 20 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE 79
Query: 253 EHMFVAS--EPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQ--RHETTKLPDPR--- 305
F + + ++VTV D GK++ +G+ F+ + RH + L +PR
Sbjct: 80 SFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPI 139
Query: 306 --WFNLHKPS 313
W L
Sbjct: 140 AQWHTLQVEE 149
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.3 bits (96), Expect = 1e-04
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAKYGN-----KWIRTRTILDTLDPRWNEQYT 421
G L + IL AKNL M G L+D Y K +T +TL+P +NE ++
Sbjct: 25 GKLTVVILEAKNLKKM--DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFS 82
Query: 422 WEVYDP-CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476
+EV + + V + K+D IGKV + ++ + H+ +L
Sbjct: 83 FEVPFEQIQKVQVVVTVLDYDKIGKND----AIGKVFVGYNSTGAE--LRHWSDML 132
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.4 bits (182), Expect = 2e-16
Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 1/121 (0%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSN 101
L + V+ A+ PYVEV + + +P W Q +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKL 67
Query: 102 LVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLA 161
V + D +G D++E +L K T G++ +
Sbjct: 68 HFRVWSHQT-LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSIC 126
Query: 162 V 162
+
Sbjct: 127 L 127
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (132), Expect = 9e-10
Identities = 15/118 (12%), Positives = 37/118 (31%), Gaps = 3/118 (2%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVRSVNPVWNEEHMFVASEPFE 263
L++ V A+ + P YV++ + + T + + +P W + + + +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTN-SPKWKQPLTVIVTPVSK 66
Query: 264 DLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSLSAEEGAE 321
V + D +LG + + + + L E +
Sbjct: 67 LHFRVWSHQTL--KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGD 122
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.6 bits (177), Expect = 8e-16
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAF--S 94
L V +++ +L MD +G DP+V++ L K + +K NP +N+ F +
Sbjct: 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76
Query: 95 KERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKI 153
L ++++V D D +D++G + R+ WY K KI
Sbjct: 77 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERL-------KHWYECLKNKDKKI 129
Query: 154 TQ 155
+
Sbjct: 130 ER 131
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.4 bits (122), Expect = 2e-08
Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 13/129 (10%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHVR----SVNPV 249
+ +S + L V + L + D +VK+ L + + ++NP
Sbjct: 7 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 66
Query: 250 WNEEHMF--VASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHE-------TTK 300
+NEE + S+ + + ++V D ++ +G + + +R +
Sbjct: 67 FNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKD 126
Query: 301 LPDPRWFNL 309
RW L
Sbjct: 127 KKIERWHQL 135
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.8 bits (105), Expect = 5e-06
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCVA-----KYGNKWIRTRTILDTLDPRWNEQYT 421
G L +GI+ +L M + +D + +T+ TL+P +NE++
Sbjct: 15 GGLIVGIIRCVHLAAMDANG--YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFF 72
Query: 422 WEVYDP-CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476
+++ ++ + + G +D I +L H+Y L
Sbjct: 73 YDIKHSDLAKKSLDISVWDYDIGKSNDYIG------GCQLGISAKGERLKHWYECL 122
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.8 bits (170), Expect = 9e-15
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 38 QMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-----KGIAKHLEKNQNPVWNQIFA 92
L V ++KA NL MD++G DPYV+ L + K + NP +N+
Sbjct: 18 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 77
Query: 93 F--SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRV---------PPDSPLAP 140
F + E +++ + + V D D IG ++ +G P P+
Sbjct: 78 FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE- 136
Query: 141 QWYRLEDRK 149
W++L + K
Sbjct: 137 HWHQLVEEK 145
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.4 bits (104), Expect = 7e-06
Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 14/127 (11%)
Query: 197 FSPKLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGNLVRVTRPSHV----RSVNPVWNE 252
+ P L V + +A +L + D YVK L + R + ++NP +NE
Sbjct: 15 YLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNE 74
Query: 253 EHMF--VASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNV---PQRHETTKLPDPR-- 305
+F + + V D G +E++G + + H L +PR
Sbjct: 75 ALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKP 134
Query: 306 ---WFNL 309
W L
Sbjct: 135 VEHWHQL 141
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.0 bits (95), Expect = 9e-05
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 11/117 (9%)
Query: 365 SIGILELGILSAKNLMPMTSKDGKLTDAYCVAKYGN-----KWIRTRTILDTLDPRWNEQ 419
+ G+L + I+ A NL M +D Y A + K +T +TL+P +NE
Sbjct: 18 TAGLLTVTIIKASNLKAMDL--TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEA 75
Query: 420 YTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476
++V + ++ IG R+ + H+ +L
Sbjct: 76 LVFDVAPESVENVGLSIAVVDYDCIGH---NEVIGVCRVGPEAADPHGR-EHWAEML 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 65.0 bits (157), Expect = 3e-13
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 38 QMHYLFVNVVKARNLPVMDVSGSLDPYVE---VKLGNYKGIAKHLEKNQNPVWNQ--IFA 92
L V +++A +LP D +G DPYV+ + K K K NP++N+ F+
Sbjct: 16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS 75
Query: 93 FSKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147
L + +V D D + D +G+V D PPD PL W + +
Sbjct: 76 VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.3 bits (93), Expect = 1e-04
Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 12/116 (10%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCVA---KYGNKWIRTRTILDTLDPRWNEQYTWE 423
L + IL A +L S +D Y K +T+ TL+P +NE + +
Sbjct: 18 DQLVVRILQALDLPAKDS--NGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFS 75
Query: 424 VYDP-CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLY--THYYPLL 476
V + S+ D IG+V + ++ + +L
Sbjct: 76 VPLAELAQRKLHFSVYDFDRFSRHD----LIGQVVLDNLLELAEQPPDRPLWRDIL 127
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.1 bits (158), Expect = 3e-13
Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 16/127 (12%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSL-DPYVEVKL---GNYKGIAKHLEKNQNPVW 87
Y+ + VN+ +AR LP MD DPY+++ + +K + L K +P +
Sbjct: 16 EYN--FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAF 73
Query: 88 NQIFAF---SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWY 143
++ F F ++Q + T+ D +DD +G V L + +
Sbjct: 74 DETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI------ELSEGKMLM 127
Query: 144 RLEDRKG 150
E G
Sbjct: 128 NREIISG 134
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (127), Expect = 6e-09
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 14/122 (11%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAKY---GNKWIRTRTILDTLDPRWNEQYTWE 423
+ I A+ L M + +D Y ++TR + TLDP ++E +T+
Sbjct: 22 KAFVVNIKEARGLPAM-DEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80
Query: 424 VYDP----CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLT 479
+ + S+DD IG+V I LS +E ++
Sbjct: 81 GIPYTQIQELALHFTILSFDRF--SRDD----IIGEVLIPLSGIELSEGKMLMNREIISG 134
Query: 480 PS 481
PS
Sbjct: 135 PS 136
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (111), Expect = 8e-07
Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 12/126 (9%)
Query: 194 KVYFSPKLYYLRVFVFEAQDLVPSEE-GRAPDAYVKIQLGNLVRVTRPSHVRS--VNPVW 250
+ ++ + V + EA+ L +E D Y+K+ + + + V ++P +
Sbjct: 14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAF 73
Query: 251 NEE---HMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWF 307
+E + ++ E + T+ +D+I+G IP+ +
Sbjct: 74 DETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKM------LM 127
Query: 308 NLHKPS 313
N S
Sbjct: 128 NREIIS 133
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 63.2 bits (153), Expect = 1e-12
Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 17/132 (12%)
Query: 42 LFVNVVKARNLPV--MDVSGSLDPYVEVKLGNYKGIAKHLEKNQ------NPVWNQIFAF 93
L V ++ + LP + + +DP V V++ + NP W+ F F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 94 SKERLQSNLVEVTVKDKD-IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDK 152
LV V+D D K+DF+G+ T + + L + GD+
Sbjct: 66 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQ 117
Query: 153 ITQGEIMLAVWI 164
+ + + I
Sbjct: 118 HPSATLFVKISI 129
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.5 bits (138), Expect = 1e-10
Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 7/118 (5%)
Query: 204 LRVFVFEAQDL--VPSEEGRAPDAYVKIQ-----LGNLVRVTRPSHVRSVNPVWNEEHMF 256
LRV + Q L V + D V ++ R T NP W+ E F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 257 VASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSL 314
+ P L+ VED K++ +G+ IP ++ Q + L +L
Sbjct: 66 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPSATL 123
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.4 bits (104), Expect = 5e-06
Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 368 ILELGILSAKNLMPMTSKDGKLTDAYCVAKY-----GNKWIRTRTI-LDTLDPRWNEQYT 421
L + I+S + L + + D + + +T I + +PRW+ ++
Sbjct: 5 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 64
Query: 422 WEVYDPCT-VITIGVFDNCHVNGSKDDAIDQRIGKVRIRL 460
+EV P ++ V D + + IG+ I
Sbjct: 65 FEVTVPDLALVRFMVEDYDSSSK------NDFIGQSTIPW 98
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 59.9 bits (144), Expect = 2e-11
Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 23/136 (16%)
Query: 41 YLFVNVVKARNLPVMDVS-----------GSLDPYVEVKLGNYK-GIAKHLEKNQNPVWN 88
L + + +A +L S LDPY+ + + + + G +K +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 89 QIFAFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDR 148
F + + V IG DDFV T E+ S W LE
Sbjct: 67 DEFVTDVCNGRKIELAVFHDAP-IGYDDFVANCTIQFEELLQN---GSRHFEDWIDLEP- 121
Query: 149 KGDKITQGEIMLAVWI 164
+G++ + + +
Sbjct: 122 ------EGKVYVIIDL 131
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 56.8 bits (136), Expect = 3e-10
Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 27/142 (19%)
Query: 367 GILELGILSAKNLMPM---------TSKDGKLTDAYCVAKYGN-KWIRTRTILDTLDPRW 416
G+L++ I A +L P L D Y + + +T T T P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 417 NEQYTWEVYDPCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTL--ETDRLYTHYYP 474
++++ +V + I + VF + + D + I+ L R + +
Sbjct: 66 HDEFVTDVCNGRK-IELAVFHDAPIG------YDDFVANCTIQFEELLQNGSRHFEDWID 118
Query: 475 LLVLTPSGLKKNGELHLALRFT 496
L+ G++++ + +
Sbjct: 119 --------LEPEGKVYVIIDLS 132
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 50.7 bits (120), Expect = 4e-08
Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 16/120 (13%)
Query: 203 YLRVFVFEAQDLVPSEEGRA-----------PDAYVKIQLGNLVRVTRPSHVRSVNPVWN 251
L++ + EA L P+ D Y+ + + + + ++ +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 252 EEHMFVASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHK 311
+E + + + V + IG D+ + I + Q W +L
Sbjct: 67 DEFVTDVCNGRKIELAVFHDAPIGY--DDFVANCTIQFEELLQNGSRHF---EDWIDLEP 121
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.7 bits (136), Expect = 2e-10
Identities = 16/123 (13%), Positives = 38/123 (30%), Gaps = 18/123 (14%)
Query: 47 VKARNL-PVMDVSGSLDPYVEVKLGNYKGIA-----KHLEKNQNPVWNQIFAFSKERLQS 100
+ L + + P+ VK+ + P W F +
Sbjct: 9 FNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV 68
Query: 101 NLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIML 160
+++ + +D + VT + + R ++ A W L+ Q ++++
Sbjct: 69 --IQIVLMRAA---EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-------PQAKVLM 116
Query: 161 AVW 163
V
Sbjct: 117 CVQ 119
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.1 bits (111), Expect = 5e-07
Identities = 13/127 (10%), Positives = 36/127 (28%), Gaps = 20/127 (15%)
Query: 374 LSAKNLMPMTSKDGKLTDAYCVAKYGNKWI-----RTRTILDTLDPRWNEQYTWEVYDPC 428
++ L + ++D +C K T+ P W + +
Sbjct: 9 FNSYELGSLQAEDDAS-QPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI-YEG 66
Query: 429 TVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGE 488
VI I + S + +G + + + + L+ +
Sbjct: 67 RVIQIVLMRAAEDPMS-----EVTVGVSVLAERCKKNNGKAEFWLD--------LQPQAK 113
Query: 489 LHLALRF 495
+ + +++
Sbjct: 114 VLMCVQY 120
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.7 bits (133), Expect = 6e-10
Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 17/125 (13%)
Query: 32 SYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKH----LEKNQNPVW 87
YD Q LFV ++A + G D YV+ + N G + ++ + W
Sbjct: 20 DYD--CQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTW 74
Query: 88 NQIFAFSKERLQSNLVEVTVKDKD---IGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYR 144
+ + +T+ + + G + L + QW
Sbjct: 75 EEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA-----QWGE 129
Query: 145 LEDRK 149
L+
Sbjct: 130 LKTSG 134
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (106), Expect = 3e-06
Identities = 13/109 (11%), Positives = 25/109 (22%), Gaps = 4/109 (3%)
Query: 367 GILELGILSAKNLMPMTSKDGKLTDAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYD 426
L + L A D + + G+ +T L W E + +
Sbjct: 26 AELFVTRLEAVTSNHDGGCDCYVQ-GSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84
Query: 427 PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPL 475
+ G++R+ L + L
Sbjct: 85 EELPTATLTLTLRTCDRFSR---HSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (105), Expect = 3e-06
Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 25/122 (20%)
Query: 42 LFVNVVKARNLPVMDVSGSLDPYVEVKLG--------NYKGIAKHLEKNQNPVWNQ--IF 91
L + V+ + L V YVEV+L Y+ + NPVW +
Sbjct: 3 LSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 92 AFSKERLQSNLVEVTVKDKDIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGD 151
+ + V V ++ + F+G + + L
Sbjct: 59 FEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNS--------GYHHLCLHSESNM 107
Query: 152 KI 153
+
Sbjct: 108 PL 109
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (92), Expect = 2e-04
Identities = 28/120 (23%), Positives = 42/120 (35%), Gaps = 17/120 (14%)
Query: 204 LRVFVFEAQDLVPSEEGRAPDAYVKIQLGNL-------VRVTRPSHVRSVNPVWNEEHMF 256
L + V Q L R+ YV+++L L R S+NPVW EE
Sbjct: 3 LSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 257 --VASEPFEDLIIVTVEDRIGPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKPSL 314
P + V V + ++ LG IP+ + + L L P+L
Sbjct: 59 FEKILMPELASLRVAVMEE----GNKFLGHRIIPINALNSGYHHLCLHSESNMPLTMPAL 114
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 782 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.86 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.86 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.8 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.79 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.79 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.79 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.78 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.78 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.78 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.77 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.77 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.77 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.75 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.75 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.75 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.74 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.72 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.72 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.72 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.71 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.71 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.71 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.71 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.7 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.69 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.68 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.68 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.67 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.66 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.66 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.64 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.63 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.62 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.61 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.6 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.58 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.54 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.53 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.47 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.29 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 94.92 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 91.33 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=9.5e-22 Score=177.36 Aligned_cols=121 Identities=26% Similarity=0.473 Sum_probs=106.3
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVN 442 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~ 442 (782)
++.|.|+|+|++|+||++++. .|+ ||||++++++++++|++++++.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d~---~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~ 79 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAADF---SGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK 79 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSSS---SSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred CccEEEEEEEEEeECCCCCCC---CCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCc
Confidence 456999999999999997753 466 9999999999999999999999999999999999988889999999998765
Q ss_pred CCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEEE
Q 045512 443 GSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRFT 496 (782)
Q Consensus 443 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~ 496 (782)
+|++||++.|+|+++..+. .+|+.|......+ +..|+|+|++++.
T Consensus 80 ------~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~i 124 (126)
T d2ep6a1 80 ------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLI 124 (126)
T ss_dssp ------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEE
T ss_pred ------CcceEEEEEEEHHHCCCCC--ceEEEccccCCCC-ceeEEEEEEEEEE
Confidence 7899999999999998876 5799997665544 3459999998874
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.3e-21 Score=176.38 Aligned_cols=121 Identities=33% Similarity=0.562 Sum_probs=106.5
Q ss_pred cccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-C
Q 045512 36 VEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-K 114 (782)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~ 114 (782)
.+++|.|+|+|++|+||+.++..|++||||++++++++++|+++++|.||+|||+|.|.+.+. ...|.|+|||++.. +
T Consensus 2 ~~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~~ 80 (126)
T d2ep6a1 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDKP 80 (126)
T ss_dssp CCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTEE
T ss_pred CCccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCCcC
Confidence 357899999999999999999999999999999999999999999999999999999999875 47899999999988 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 115 DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
|++||++.++|.++..+ ..+|+.|..........|+|++++.+
T Consensus 81 d~~lG~~~i~l~~l~~~-------~~~~~~l~~~~~~~~~~G~i~l~~~~ 123 (126)
T d2ep6a1 81 PDFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAFKGVIYLEMDL 123 (126)
T ss_dssp EEECCBCEEEGGGCCSS-------CCEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred cceEEEEEEEHHHCCCC-------CceEEEccccCCCCceeEEEEEEEEE
Confidence 89999999999998654 35799987765444334999998865
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.80 E-value=1.4e-19 Score=165.30 Aligned_cols=123 Identities=23% Similarity=0.322 Sum_probs=104.8
Q ss_pred cCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeecccc-CCCCCccccEEEEEEeCCCceEEEEEEeCCC
Q 045512 363 KGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTIL-DTLDPRWNEQYTWEVYDPCTVITIGVFDNCH 440 (782)
Q Consensus 363 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~-~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~ 440 (782)
..+.|.|+|+|++|++|++++. .|+ ||||+++++++..+|++++ ++.||.|||.|.|.+.++...|+|+|||++.
T Consensus 6 ~~p~G~L~V~v~~a~~L~~~d~---~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~ 82 (136)
T d1wfja_ 6 SGPHGTLEVVLVSAKGLEDADF---LNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDV 82 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCCS---SCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSS
T ss_pred CCCcEEEEEEEEEeeCCCCCCC---CCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecC
Confidence 3567999999999999997653 466 9999999999999999987 5899999999999999887889999999998
Q ss_pred CCCCCCCcCCCccEEEEEecccccC-CcEEEEEEEceeeCCCCCccccEEEEEEEEEEC
Q 045512 441 VNGSKDDAIDQRIGKVRIRLSTLET-DRLYTHYYPLLVLTPSGLKKNGELHLALRFTCT 498 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~ 498 (782)
++ +|++||++.|+|.++.. +.....|++|.. +.+..|+|+++++|.+.
T Consensus 83 ~~------~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~----~~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 83 GT------EDDAVGEATIPLEPVFVEGSIPPTAYNVVK----DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp CT------TTCCSEEEEEESHHHHHHSEEEEEEEEEEE----TTEEEEEEEEEEEEEEC
T ss_pred CC------CCCEEEEEEEEhHHhcccCCcCcEEEEecC----CCccCEEEEEEEEEEeC
Confidence 76 89999999999999744 455578999864 22446999999999663
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=3.3e-19 Score=164.25 Aligned_cols=117 Identities=30% Similarity=0.455 Sum_probs=102.5
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeeeeeccccCCCCCeeccEEEEEec--cC
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL---GNYKGIAKHLEKNQNPVWNQIFAFSKE--RL 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~i~~t~nP~wne~f~f~~~--~~ 98 (782)
+|.+.+++.|+... +.|.|+|++|+||+.++..|.+||||++++ +.++++|+++++|.||+|||+|.|.+. +.
T Consensus 20 ~G~l~~sl~y~~~~--~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l 97 (143)
T d1rsya_ 20 LGKLQYSLDYDFQN--NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97 (143)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHH
T ss_pred ceEEEEEEEEeCCC--CEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeecc
Confidence 67889999998854 599999999999999998999999999999 345789999999999999999999874 33
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
....|.|.|||++.. ++++||++.|+|.++..+.. ..+||+|+.
T Consensus 98 ~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~-----~~~W~~L~s 142 (143)
T d1rsya_ 98 GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV-----TEEWRDLQS 142 (143)
T ss_dssp TTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSC-----EEEEEECBC
T ss_pred CCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCC-----CccEEeCCC
Confidence 467899999999998 89999999999999976532 579999974
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2e-19 Score=162.02 Aligned_cols=116 Identities=23% Similarity=0.394 Sum_probs=99.5
Q ss_pred cEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC
Q 045512 40 HYLFVNVVKARNLPVM---DVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG 113 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~---d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~ 113 (782)
+.|+|+|++|+||+.. |..|++||||++.+++ ++++|+++.++.||.|||+|.|.+.+.....|.|+|||++..
T Consensus 3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~ 82 (126)
T d1rlwa_ 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV 82 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred cEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCCC
Confidence 5899999999999974 3458899999999986 578999999999999999999999887778899999999988
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 114 KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
+|++||++.++|.++..+.. ..+||+|.+.+ .|+|.+++.+.
T Consensus 83 ~d~~lG~~~i~L~~l~~~~~-----~~~~~~L~~~~-----~g~i~~~l~~~ 124 (126)
T d1rlwa_ 83 MDETLGTATFTVSSMKVGEK-----KEVPFIFNQVT-----EMVLEMSLEVA 124 (126)
T ss_dssp CCEEEEEEEEEGGGSCTTCE-----EEEEEEETTTE-----EEEEEEEEECC
T ss_pred CCCeEEEEEEEHHHccCCCe-----EEEEEEccCCC-----eEEEEEEEEEE
Confidence 99999999999999976543 56899996542 28888877543
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=3e-19 Score=161.52 Aligned_cols=119 Identities=31% Similarity=0.431 Sum_probs=99.3
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEecc--C
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN---YKGIAKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~i~~t~nP~wne~f~f~~~~--~ 98 (782)
+|...+++.|+. ..+.|.|+|++|+||+.++..|.+||||++++.+ ++++|+++++|.||+|||+|.|.+.. .
T Consensus 4 ~G~l~~sl~y~~--~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~ 81 (130)
T d1dqva1 4 CGRISFALRYLY--GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 81 (130)
T ss_dssp SCEEEEEEECCS--SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred cEEEEEEEEEEC--CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHc
Confidence 477888888877 5569999999999999999999999999999953 57899999999999999999998743 3
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLED 147 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (782)
....|.|+|||++.+ +|++||++.|++.......+.+ .+.||+|.+
T Consensus 82 ~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~---~~~W~~L~~ 128 (130)
T d1dqva1 82 AQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD---RPLWRDILE 128 (130)
T ss_dssp SSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSS---CCCCEECBC
T ss_pred CCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCC---CcEEEeccc
Confidence 467899999999988 9999999999865443333222 456999986
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.78 E-value=1.6e-19 Score=165.03 Aligned_cols=122 Identities=27% Similarity=0.394 Sum_probs=104.3
Q ss_pred ccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeecccc-CCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-C
Q 045512 37 EQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLE-KNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-K 114 (782)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~-~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~ 114 (782)
.+.|.|+|+|++|++|+.++..|++||||+++++++..+|++++ ++.||+|||+|.|.+.+. ...|+|+|||++.+ +
T Consensus 7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~ 85 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVGTE 85 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSSCTT
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecCCCC
Confidence 36789999999999999999999999999999999999999887 588999999999999874 46799999999998 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEcc
Q 045512 115 DDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIGT 166 (782)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (782)
|++||++.|+|.++.... ....+|+.|.... +.. |+|++++.|.+
T Consensus 86 d~~iG~~~i~L~~l~~~~----~~~~~~~~l~~~~--~~~-G~i~l~l~~~p 130 (136)
T d1wfja_ 86 DDAVGEATIPLEPVFVEG----SIPPTAYNVVKDE--EYK-GEIWVALSFKP 130 (136)
T ss_dssp TCCSEEEEEESHHHHHHS----EEEEEEEEEEETT--EEE-EEEEEEEEEEE
T ss_pred CCEEEEEEEEhHHhcccC----CcCcEEEEecCCC--ccC-EEEEEEEEEEe
Confidence 999999999999986532 2346899997532 233 99999998864
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=1.1e-19 Score=167.61 Aligned_cols=117 Identities=37% Similarity=0.591 Sum_probs=100.3
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC--------------eeeeeccccCCCCCeecc
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN--------------YKGIAKHLEKNQNPVWNQ 89 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~--------------~~~~T~~i~~t~nP~wne 89 (782)
.|.+++++.|+ .+.|.|+|++|+||+.++..|.+||||++++.+ ++.+|+++++|.||+|||
T Consensus 6 ~G~l~lsl~y~----~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne 81 (142)
T d1rh8a_ 6 TGEIQLQINYD----LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ 81 (142)
T ss_dssp CCEEEEEEEEE----TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred ceEEEEEEEEe----CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEE
Confidence 46788999986 368999999999999999999999999999942 246899999999999999
Q ss_pred EEEEEe---ccCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 90 IFAFSK---ERLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 90 ~f~f~~---~~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
.|.|.. .++....|.|.|||++.+ +|++||++.|+|.++..... ..+||+|.+.+
T Consensus 82 ~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~-----~~~W~~L~~~~ 140 (142)
T d1rh8a_ 82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN-----TPRWYPLKEQT 140 (142)
T ss_dssp EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTT-----CCEEEECBCCC
T ss_pred EEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCC-----ceEEEECcCcC
Confidence 999973 234567899999999988 89999999999999976543 67999998764
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=6e-19 Score=159.90 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=97.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCC-CCcee
Q 045512 40 HYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIG-KDDFV 118 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~-~d~~l 118 (782)
++|.|+|++|++|+.++..+++||||+++++++.++|+++++|.||+|||.|.|.+.. ...|.|+|||++.+ +|++|
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d~~i 83 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLL 83 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCEEE
T ss_pred eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCCceE
Confidence 5899999999999998888999999999999999999999999999999999999876 46899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEE
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVW 163 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 163 (782)
|++.++|.++.............|+.|....+.....|+|.+.+.
T Consensus 84 G~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~ 128 (133)
T d2nq3a1 84 GTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLD 128 (133)
T ss_dssp EEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEE
T ss_pred EEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEe
Confidence 999999999865322111123345555554443333499988774
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=7.8e-19 Score=159.33 Aligned_cols=114 Identities=31% Similarity=0.525 Sum_probs=96.1
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeeeeeccccCCCCCeeccEEEEEeccC-
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKL-----GNYKGIAKHLEKNQNPVWNQIFAFSKERL- 98 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~i~~t~nP~wne~f~f~~~~~- 98 (782)
|.+.+.+.|+ .+.|.|+|++|+||+.+|..|.+||||++++ +..+++|+++++|.||+|||.|.|.+...
T Consensus 4 G~i~l~~~~~----~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 79 (132)
T d1a25a_ 4 GRIYIQAHID----REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD 79 (132)
T ss_dssp CEEEEEEEES----SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG
T ss_pred cEEEEEEEec----CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccc
Confidence 4455555553 3689999999999999999999999999999 33578999999999999999999998653
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDR 148 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
....|.|.|||+|.+ +|++||++.|+|.++..+. ..+||+|.+.
T Consensus 80 ~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~------~~~W~~L~~~ 124 (132)
T d1a25a_ 80 KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQ 124 (132)
T ss_dssp GGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCC------EEEEEECBCH
T ss_pred cCCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCCC------CCeEEECCCC
Confidence 245799999999998 8999999999999986532 5689999764
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4e-19 Score=160.03 Aligned_cols=117 Identities=19% Similarity=0.249 Sum_probs=98.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC---EEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCC
Q 045512 366 IGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN---KWIRTRTILDTLDPRWNEQYTWEVYDP-CTVITIGVFDNCH 440 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~---~~~~T~~~~~t~nP~wne~~~f~v~~~-~~~l~i~V~d~~~ 440 (782)
.+.|+|+|++|+||+.....+..|+ ||||++++++ ++.||++++++.||.|||.|.|.+.++ ...|.|+|||++.
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence 3789999999999986433233466 9999999975 678999999999999999999999875 4589999999986
Q ss_pred CCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 441 VNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 441 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
. +|++||++.|+|++|..++....||+|.. .+.|.|++++++
T Consensus 82 ~-------~d~~lG~~~i~L~~l~~~~~~~~~~~L~~------~~~g~i~~~l~~ 123 (126)
T d1rlwa_ 82 V-------MDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLEV 123 (126)
T ss_dssp S-------CCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEEC
T ss_pred C-------CCCeEEEEEEEHHHccCCCeEEEEEEccC------CCeEEEEEEEEE
Confidence 4 58899999999999999999999999953 234888887765
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.77 E-value=1.8e-18 Score=157.42 Aligned_cols=119 Identities=19% Similarity=0.379 Sum_probs=100.3
Q ss_pred ceEEEEEEEEeeCCCCCCC--------CCCCCC-CcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEEE
Q 045512 366 IGILELGILSAKNLMPMTS--------KDGKLT-DAYCVAKYGNKW-IRTRTILDTLDPRWNEQYTWEVYDPCTVITIGV 435 (782)
Q Consensus 366 ~g~l~v~v~~a~~L~~~~~--------~~~~~~-dpyv~v~~~~~~-~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V 435 (782)
.|.|+|+|++|+||++++. ....+. ||||+++++++. .+|++++++.||.|||.|.|++.+. ..|.|+|
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~-~~l~i~V 83 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAV 83 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC-CceEEEE
Confidence 4999999999999997641 123455 999999999866 5899999999999999999999764 6899999
Q ss_pred EeCCCCCCCCCCcCCCccEEEEEecccccCC--cEEEEEEEceeeCCCCCccccEEEEEEEEEECc
Q 045512 436 FDNCHVNGSKDDAIDQRIGKVRIRLSTLETD--RLYTHYYPLLVLTPSGLKKNGELHLALRFTCTA 499 (782)
Q Consensus 436 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~~~~~~ 499 (782)
||++.++ +|++||++.|+|+++..+ .....|++|.. .|+|++++++++++
T Consensus 84 ~d~~~~~------~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p--------~G~v~l~v~~~~~~ 135 (136)
T d1gmia_ 84 FHDAPIG------YDDFVANCTIQFEELLQNGSRHFEDWIDLEP--------EGKVYVIIDLSGSS 135 (136)
T ss_dssp EECCSSS------SCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--------SCEEEEEEEEEEEE
T ss_pred EEecCCC------CceeEEEEEEEHHHhhhcCCcceeEEEeCCC--------CcEEEEEEEEEeCC
Confidence 9999876 899999999999998544 45678999952 59999999997754
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.75 E-value=3.2e-18 Score=155.78 Aligned_cols=116 Identities=21% Similarity=0.340 Sum_probs=98.8
Q ss_pred cccEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEECCee-eeeccccCCCCCeeccEEEEEeccCCCCeEEE
Q 045512 38 QMHYLFVNVVKARNLPVMD-----------VSGSLDPYVEVKLGNYK-GIAKHLEKNQNPVWNQIFAFSKERLQSNLVEV 105 (782)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~d-----------~~g~~dPyv~v~~~~~~-~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v 105 (782)
..|.|+|+|++|++|++.+ ..+.+||||+++++++. .+|+++.++.||+|||+|.|.+.+ ...|.|
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~i 81 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKIEL 81 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEE
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec--CCceEE
Confidence 3589999999999998753 35789999999999864 689999999999999999999876 478999
Q ss_pred EEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 106 TVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 106 ~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
+|||++.+ +|++||++.|+|.++..+.. ...++|++|++ .|+|++.+.+.
T Consensus 82 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~---~~~~~w~~L~p-------~G~v~l~v~~~ 132 (136)
T d1gmia_ 82 AVFHDAPIGYDDFVANCTIQFEELLQNGS---RHFEDWIDLEP-------EGKVYVIIDLS 132 (136)
T ss_dssp EEEECCSSSSCEEEEEEEEEHHHHTSTTC---SEEEEEEECBS-------SCEEEEEEEEE
T ss_pred EEEEecCCCCceeEEEEEEEHHHhhhcCC---cceeEEEeCCC-------CcEEEEEEEEE
Confidence 99999998 89999999999999987643 23568999974 28999888665
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=3.3e-18 Score=153.59 Aligned_cols=114 Identities=27% Similarity=0.514 Sum_probs=93.0
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeccccCCCCCeeccEEEEE-ec--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLG-----NYKGIAKHLEKNQNPVWNQIFAFS-KE-- 96 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~i~~t~nP~wne~f~f~-~~-- 96 (782)
|.+.+++.|+.. .+.|.|+|++|+||+..+..+.+||||+|.+. ..+++|+++++|.||+|||+|.|. +.
T Consensus 1 G~l~l~l~y~~~--~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~ 78 (125)
T d2bwqa1 1 GQLSIKLWFDKV--GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR 78 (125)
T ss_dssp CEEEEEEEEETT--TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGG
T ss_pred CEEEEEEEEECC--CCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChh
Confidence 457788888774 46999999999999999989999999999993 246899999999999999999996 33
Q ss_pred cCCCCeEEEEEEeCCCC---CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 045512 97 RLQSNLVEVTVKDKDIG---KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLE 146 (782)
Q Consensus 97 ~~~~~~L~v~V~d~d~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (782)
+.....|.|.|||++.. ++++||++.|+|.++.... ..+||+|+
T Consensus 79 ~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~------~~~Wy~L~ 125 (125)
T d2bwqa1 79 EFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQ 125 (125)
T ss_dssp GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS------CEEEEECC
T ss_pred hcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC------CCEEEeCc
Confidence 33457899999999976 5679999999999987653 35899985
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=3.8e-18 Score=154.70 Aligned_cols=102 Identities=24% Similarity=0.421 Sum_probs=88.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE-----CCEEEeeccccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKY-----GNKWIRTRTILDTLDPRWNEQYTWEVYDP--CTVITIGVFDN 438 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~~~~~~T~~~~~t~nP~wne~~~f~v~~~--~~~l~i~V~d~ 438 (782)
+.|.|+|++|+||++++. .|. ||||++++ +..+.+|+++++|.||.|||.|.|.+.++ ...|.|+|||+
T Consensus 15 ~~L~V~V~~a~~L~~~d~---~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 91 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPMDP---NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 91 (132)
T ss_dssp SEEEEEEEEEESCCCCST---TSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred CEEEEEEEeeeCCCCCCC---CCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEec
Confidence 689999999999998754 366 99999998 45678999999999999999999999864 45799999999
Q ss_pred CCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceee
Q 045512 439 CHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVL 478 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 478 (782)
+.++ +|++||.+.|+|+++..+. .++||+|.+.
T Consensus 92 d~~~------~d~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 124 (132)
T d1a25a_ 92 DLTS------RNDFMGSLSFGISELQKAG-VDGWFKLLSQ 124 (132)
T ss_dssp CSSS------CCEEEEEEEEEHHHHTTCC-EEEEEECBCH
T ss_pred CCCC------CCcEeEEEEEeHHHcCCCC-CCeEEECCCC
Confidence 9876 8899999999999997654 6889999763
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=1.2e-17 Score=151.04 Aligned_cols=117 Identities=24% Similarity=0.390 Sum_probs=95.7
Q ss_pred cEEEEEEEEeecCCCC--CCCCCCCcEEEEEEC-----CeeeeeccccCC-CCCeeccEEEEEeccCCCCeEEEEEEeCC
Q 045512 40 HYLFVNVVKARNLPVM--DVSGSLDPYVEVKLG-----NYKGIAKHLEKN-QNPVWNQIFAFSKERLQSNLVEVTVKDKD 111 (782)
Q Consensus 40 ~~L~V~v~~a~~L~~~--d~~g~~dPyv~v~~~-----~~~~~T~~i~~t-~nP~wne~f~f~~~~~~~~~L~v~V~d~d 111 (782)
..|.|+|++|++|+.. +..+.+||||+|++. .++++|++++++ .||+|||+|.|.+.......|.|+|||+|
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence 4799999999999754 457889999999994 367899988755 69999999999887766788999999999
Q ss_pred CC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 112 IG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 112 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
.. +|++||++.|+|..+..+ .+|++|.+..|.....+.|.+.+.+
T Consensus 84 ~~~~d~~iG~~~i~l~~l~~g--------~~~~~L~~~~g~~~~~~~L~v~i~~ 129 (131)
T d1qasa2 84 SSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQHPSATLFVKISI 129 (131)
T ss_dssp TTTCCEEEEEEEEEGGGBCCE--------EEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred CCCCCcEEEEEEEEEeccCCC--------CEEEECCCCCcCCCCCCEEEEEEEE
Confidence 98 899999999999998653 3699999988876544788877755
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=3.6e-17 Score=145.97 Aligned_cols=102 Identities=27% Similarity=0.387 Sum_probs=88.1
Q ss_pred ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCCcee
Q 045512 39 MHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGNYKGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKDDFV 118 (782)
Q Consensus 39 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d~~l 118 (782)
|+.|.|+|++|++|.+++ ++||||++++++++.+|++++ +.||+|||.|.|.+.++ ...|.|+|||.+..+|++|
T Consensus 1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~~d~~l 75 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLIWDTMV 75 (128)
T ss_dssp CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSSCEEEE
T ss_pred CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCcCCcce
Confidence 468999999999999865 679999999999999999986 56999999999999886 4789999999988899999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 045512 119 GRVTFDLFEVPHRVPPDSPLAPQWYRLEDR 148 (782)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (782)
|++.|+|.++..... ....+||+|..+
T Consensus 76 G~~~I~L~~l~~~~~---~~~~~W~~L~~~ 102 (128)
T d2cjta1 76 GTVWIPLRTIRQSNE---EGPGEWLTLDSQ 102 (128)
T ss_dssp EEEEEEGGGSCBCSS---CCCCEEEECBC-
T ss_pred EEEEEEehhhccCCC---CCCCeeEECCcc
Confidence 999999999975432 235689999654
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.9e-17 Score=149.00 Aligned_cols=110 Identities=25% Similarity=0.362 Sum_probs=93.4
Q ss_pred cccccCCceeEEEecccccccEEEEEEEEeecCCCCCCCC-CCCcEEEEEEC---CeeeeeccccCCCCCeeccEEEEEe
Q 045512 20 RLRYRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSG-SLDPYVEVKLG---NYKGIAKHLEKNQNPVWNQIFAFSK 95 (782)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g-~~dPyv~v~~~---~~~~~T~~i~~t~nP~wne~f~f~~ 95 (782)
|.+..|...+++.|+... +.|.|+|++|+||+.++..+ .+||||++.+. .++++|++++++.||.|||+|.|..
T Consensus 4 ~~~~~G~l~~sl~Y~~~~--~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~ 81 (138)
T d1ugka_ 4 GSSGLGTLFFSLEYNFER--KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81 (138)
T ss_dssp CCCCCCEEEEEEEEEGGG--TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEEC
T ss_pred CCCCCEEEEEEEEEeCCC--CEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEee
Confidence 344578899999998854 59999999999999987665 47999999993 4578999999999999999999963
Q ss_pred -c--cCCCCeEEEEEEeCCCC-CCceeEEEEEEccccCCC
Q 045512 96 -E--RLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHR 131 (782)
Q Consensus 96 -~--~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~ 131 (782)
. +.....|+|+|||.+.+ ++++||++.|+|.++...
T Consensus 82 ~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~ 121 (138)
T d1ugka_ 82 IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121 (138)
T ss_dssp CCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCT
T ss_pred eCHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCC
Confidence 2 23356899999999998 899999999999998654
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=1.9e-17 Score=152.24 Aligned_cols=118 Identities=21% Similarity=0.274 Sum_probs=99.8
Q ss_pred eecceEEEEEEeccccccCCCCCCCCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE---CCE
Q 045512 326 KFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKY---GNK 401 (782)
Q Consensus 326 ~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~---~~~ 401 (782)
...|+|.+++..+ +..+.|.|.|++|+||++++. .|. ||||++.+ +.+
T Consensus 18 ~~~G~l~~sl~y~-------------------------~~~~~L~V~V~~a~~L~~~~~---~g~~dpyV~v~l~~~~~~ 69 (143)
T d1rsya_ 18 EKLGKLQYSLDYD-------------------------FQNNQLLVGIIQAAELPALDM---GGTSDPYVKVFLLPDKKK 69 (143)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCST---TSCCCEEEEEEEETTCCS
T ss_pred hcceEEEEEEEEe-------------------------CCCCEEEEEEEEccCCCCCCC---CCCCCeEEEEEEcCCCCe
Confidence 4468998888642 334789999999999987653 366 99999998 456
Q ss_pred EEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEcee
Q 045512 402 WIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLV 477 (782)
Q Consensus 402 ~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 477 (782)
..+|++++++.||.|||.|.|.+.. ....|.|+|||++.++ ++++||++.|+|+++..++...+||+|..
T Consensus 70 ~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~------~~~~iG~~~i~L~~~~~~~~~~~W~~L~s 142 (143)
T d1rsya_ 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS------KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS------CCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred eEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCC------CCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence 7899999999999999999998863 2468999999999876 78899999999999998888899999963
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=3.4e-17 Score=146.10 Aligned_cols=115 Identities=19% Similarity=0.238 Sum_probs=91.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~ 445 (782)
+.|.|+|.+|++|.+++ + ||||++++++.+.+|.+++ +.||.|||.|.|.+.++...|.|+|||++..
T Consensus 2 ~~L~V~v~~a~~l~~~~------~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~---- 70 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE------KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI---- 70 (128)
T ss_dssp EEEEEEEEEEECSSCGG------GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS----
T ss_pred eEEEEEEEEEECCCCCC------CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCCCc----
Confidence 57999999999998643 4 9999999999999999886 5599999999999999988999999999864
Q ss_pred CCcCCCccEEEEEecccccCC--cEEEEEEEceeeCC--CCC------ccccEEEEEEEE
Q 045512 446 DDAIDQRIGKVRIRLSTLETD--RLYTHYYPLLVLTP--SGL------KKNGELHLALRF 495 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~--~g~------~~~G~i~l~~~~ 495 (782)
+|++||++.|+|+++..+ .....||+|..... .|. ...++|.++++|
T Consensus 71 ---~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 71 ---WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp ---CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred ---CCcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence 688999999999998532 34578999965321 111 124577777765
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=4.1e-17 Score=148.86 Aligned_cols=115 Identities=18% Similarity=0.246 Sum_probs=97.2
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeccccCCCCCeeccEEEEEecc--C
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN----YKGIAKHLEKNQNPVWNQIFAFSKER--L 98 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~i~~t~nP~wne~f~f~~~~--~ 98 (782)
|...+++.|+.. .+.|.|+|++|++|+. .|.+||||++++.+ ..++|++++++.||+|||+|.|.+.. +
T Consensus 13 ~~l~~sl~y~~~--~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l 87 (138)
T d1wfma_ 13 PKLHYCLDYDCQ--KAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87 (138)
T ss_dssp CEEEEEEEEETT--TTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSS
T ss_pred CEEEEEEEECCC--CCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhc
Confidence 567788888774 5699999999999953 57899999999954 35789999999999999999999753 4
Q ss_pred CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 045512 99 QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRK 149 (782)
Q Consensus 99 ~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (782)
....|.|.|||.+.+ ++++||++.|+|.++..... ..+|++|....
T Consensus 88 ~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~-----~~~W~~L~~~~ 134 (138)
T d1wfma_ 88 PTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLG-----AAQWGELKTSG 134 (138)
T ss_dssp TTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTT-----CCEEEECCCCS
T ss_pred cceEEEEEEeeecccccceeeeEEEEEhHHccCCCC-----ceEeEeCCCCC
Confidence 568899999999998 89999999999999965432 57999998754
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=5e-17 Score=146.85 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=90.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE-----CCEEEeeccccCC-CCCccccEEEEEEeCC-CceEEEEEEeC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKY-----GNKWIRTRTILDT-LDPRWNEQYTWEVYDP-CTVITIGVFDN 438 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~~~~~~T~~~~~t-~nP~wne~~~f~v~~~-~~~l~i~V~d~ 438 (782)
..|+|+|++|++|+..+. +.++. ||||++++ +.++.||++++++ +||.|||+|+|.+..+ ...|.|+|||+
T Consensus 4 ~~l~V~Vi~a~~L~~~~~-~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~ 82 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNK-NKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY 82 (131)
T ss_dssp EEEEEEEEEEESCCCCC------CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred EEEEEEEEEeeCCCCCCC-CCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEe
Confidence 479999999999975543 34566 99999998 3478999988765 7999999999998764 45799999999
Q ss_pred CCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 439 CHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 439 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|.++ +|++||++.|+|+++..| .+|++|.+..... -..++|.+++++
T Consensus 83 d~~~------~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~-~~~~~L~v~i~~ 129 (131)
T d1qasa2 83 DSSS------KNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQ-HPSATLFVKISI 129 (131)
T ss_dssp CTTT------CCEEEEEEEEEGGGBCCE---EEEEEEECTTSCE-EEEEEEEEEEEE
T ss_pred cCCC------CCcEEEEEEEEEeccCCC---CEEEECCCCCcCC-CCCCEEEEEEEE
Confidence 9876 789999999999999876 3689997643221 124677776654
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=4.7e-17 Score=147.19 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=92.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNKWIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHVNGSK 445 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~~~~~ 445 (782)
+.|+|+|++|+++++.+. .+. ||||++.++++.++|++++++.||.|||.|+|++.+ .+.|+|+|||++.++
T Consensus 6 ~~L~v~v~~A~~~~~~~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~--- 78 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKN---WFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLK--- 78 (133)
T ss_dssp EEEEEEEEEEEECCCC-----CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSS---
T ss_pred eEEEEEEEEeECCCcCCC---CCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCC---
Confidence 789999999999986542 244 999999999999999999999999999999999875 578999999999877
Q ss_pred CCcCCCccEEEEEeccccc---CCcEEEEEEEceeeC-CCCCccccEEEEEEE
Q 045512 446 DDAIDQRIGKVRIRLSTLE---TDRLYTHYYPLLVLT-PSGLKKNGELHLALR 494 (782)
Q Consensus 446 ~~~~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~-~~g~~~~G~i~l~~~ 494 (782)
+|++||++.|+|+++. .+.....+++|.... .++....|+|.+.+.
T Consensus 79 ---~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~ 128 (133)
T d2nq3a1 79 ---SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLD 128 (133)
T ss_dssp ---CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEE
T ss_pred ---CCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEe
Confidence 8999999999999973 233223344443222 234455688887654
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=7.1e-17 Score=145.65 Aligned_cols=109 Identities=20% Similarity=0.228 Sum_probs=89.7
Q ss_pred ceEEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEEEEcc
Q 045512 200 KLYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLG---NLVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDRI 274 (782)
Q Consensus 200 ~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg---~~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d 274 (782)
..+.|.|+|++|+||+..+..+.+||||++++. .+.++|+++++ +.||.|||.|.|.+... ....|.|+|||++
T Consensus 16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~ 94 (130)
T d1dqva1 16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFD 94 (130)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcC-CCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence 344799999999999999999999999999994 46788999886 99999999999987543 3557999999999
Q ss_pred CCCCCceeEEEEEeCCCcccccCCCCCCCCeeEEccCC
Q 045512 275 GPGKDEILGREFIPVRNVPQRHETTKLPDPRWFNLHKP 312 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 312 (782)
..+++++||++.|++...... .......|++|.++
T Consensus 95 ~~~~d~~iG~~~i~~~~~l~~---~~~~~~~W~~L~~~ 129 (130)
T d1dqva1 95 RFSRHDLIGQVVLDNLLELAE---QPPDRPLWRDILEG 129 (130)
T ss_dssp SSSCCCEEEEEECCCTTGGGS---SCSSCCCCEECBCC
T ss_pred CCCCCceEEEEEECchhhhhc---CCCCCcEEEecccC
Confidence 999999999999987554332 22335579999875
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=1e-16 Score=146.35 Aligned_cols=102 Identities=26% Similarity=0.434 Sum_probs=89.7
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~-- 97 (782)
|...+++.|+. ..+.|.|+|++|+||+.++..+.+||||++++.+ .+++|++++++.||+|||+|.|.+..
T Consensus 2 G~l~l~l~Y~~--~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~ 79 (137)
T d2cm5a1 2 GKILVSLMYST--QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD 79 (137)
T ss_dssp CEEEEEEEEET--TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred cEEEEEEEEEC--CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHH
Confidence 67888888876 5569999999999999998889999999999832 46799999999999999999999753
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEcccc
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEV 128 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l 128 (782)
+....|.|.|||++.. ++++||++.+++..+
T Consensus 80 l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~ 111 (137)
T d2cm5a1 80 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 111 (137)
T ss_dssp GGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred ccccEEEEEeeeCCCCCCCCEEEEEEeCcccc
Confidence 3467899999999988 999999999999764
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=8.7e-18 Score=154.54 Aligned_cols=103 Identities=24% Similarity=0.354 Sum_probs=87.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC--------------EEEeeccccCCCCCccccEEEEEEeC----C
Q 045512 367 GILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN--------------KWIRTRTILDTLDPRWNEQYTWEVYD----P 427 (782)
Q Consensus 367 g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~--------------~~~~T~~~~~t~nP~wne~~~f~v~~----~ 427 (782)
|.|.|+|++|+||++++. .|. ||||++++.+ .+.||++++++.||.|||.|.|.+.. .
T Consensus 18 ~~L~V~V~~A~~L~~~d~---~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~ 94 (142)
T d1rh8a_ 18 GNLIIHILQARNLVPRDN---NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLM 94 (142)
T ss_dssp TEEEEEEEEEESCCCCSS---SSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHT
T ss_pred CEEEEEEEEeECCCCcCC---CCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccC
Confidence 689999999999997754 366 9999999832 22589999999999999999998543 3
Q ss_pred CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceee
Q 045512 428 CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVL 478 (782)
Q Consensus 428 ~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 478 (782)
...|.|+|||++.++ +|++||++.|+|+++..+....+||+|...
T Consensus 95 ~~~L~i~V~d~d~~~------~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 95 KKTLEVTVWDYDRFS------SNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp TCEEEEEEEEECSSS------CEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred CCEEEEEEEEecCCC------CCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 558999999999876 789999999999999888778899999864
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=1.2e-16 Score=145.71 Aligned_cols=102 Identities=33% Similarity=0.453 Sum_probs=82.6
Q ss_pred CCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeccccCCCCCeeccEEEEEecc--
Q 045512 25 GGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLG--N---YKGIAKHLEKNQNPVWNQIFAFSKER-- 97 (782)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~i~~t~nP~wne~f~f~~~~-- 97 (782)
|...+++.|+- ..+.|.|+|++|+||+.++..+.+||||++++. + .+.+|++++++.||.|||+|.|.+..
T Consensus 2 G~l~~sl~Y~~--~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~ 79 (138)
T d1w15a_ 2 GELLVSLCYQS--TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCES 79 (138)
T ss_dssp CEEEEEEEEET--TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSS
T ss_pred cEEEEEEEEcC--CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHH
Confidence 66788888887 456999999999999999988999999999983 3 35689999999999999999998743
Q ss_pred CCCCeEEEEEEeCCCC-CCceeEEEEEEcccc
Q 045512 98 LQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEV 128 (782)
Q Consensus 98 ~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l 128 (782)
.....|.|.|||++.+ ++++||++.|++...
T Consensus 80 ~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 80 LEEISVEFLVLDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp STTEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred hCccEEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence 3456799999999998 899999999998754
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.9e-16 Score=147.71 Aligned_cols=123 Identities=30% Similarity=0.335 Sum_probs=99.8
Q ss_pred ccCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEecc
Q 045512 23 YRGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKER 97 (782)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~~ 97 (782)
..|...+++.|+.. .+.|.|+|++|+||+..+..+.+||||++++.+ ..++|++++++.||+|||+|.|.+..
T Consensus 10 ~~G~l~~sl~Y~~~--~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~ 87 (157)
T d1uowa_ 10 KLGDICFSLRYVPT--AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF 87 (157)
T ss_dssp CCCEEEEEEEEETT--TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred eeeEEEEEEEEcCC--CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecH
Confidence 46788999999885 469999999999999998889999999999953 25689999999999999999998754
Q ss_pred C--CCCeEEEEEEeCCCC-CCceeEEEEEEccccCCCC--------CCCCCCCCeEEEeecC
Q 045512 98 L--QSNLVEVTVKDKDIG-KDDFVGRVTFDLFEVPHRV--------PPDSPLAPQWYRLEDR 148 (782)
Q Consensus 98 ~--~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l~~~~--------~~~~~~~~~w~~L~~~ 148 (782)
. ....|.|.|||++.+ ++++||++.|++....... .+ .....+||+|..+
T Consensus 88 ~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~-~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANP-RRPIAQWHTLQVE 148 (157)
T ss_dssp GGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHST-TCCEEEEEECBCH
T ss_pred HHcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCC-CCceeEeEeCCCC
Confidence 3 456899999999999 8999999999996532110 01 1235689999754
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2.1e-16 Score=141.61 Aligned_cols=105 Identities=25% Similarity=0.402 Sum_probs=80.5
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE-----CCEEEeeccccCCCCCccccEEEEEE-eC---CCceEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKY-----GNKWIRTRTILDTLDPRWNEQYTWEV-YD---PCTVITI 433 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~~~~~~T~~~~~t~nP~wne~~~f~v-~~---~~~~l~i 433 (782)
+..+.|.|+|++|+||++.+. .+. ||||+|.+ ...+.||++++++.||.|||.|.|.. .. ....|.|
T Consensus 11 ~~~~~L~V~V~~a~~L~~~~~---~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i 87 (125)
T d2bwqa1 11 KVGHQLIVTILGAKDLPSRED---GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEI 87 (125)
T ss_dssp TTTTEEEEEEEEEESCCCCTT---SCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEE
T ss_pred CCCCEEEEEEEEeECCCCcCC---CCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEE
Confidence 344789999999999997653 356 99999998 23568999999999999999999974 32 2347999
Q ss_pred EEEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 434 GVFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 434 ~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
+|||.+.++ .+.+++||++.|+|+++..... .+||+|.
T Consensus 88 ~v~d~~~~~----~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~ 125 (125)
T d2bwqa1 88 TLWDQARVR----EEESEFLGEILIELETALLDDE-PHWYKLQ 125 (125)
T ss_dssp EEEEC-----------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred EEEECCCCC----CCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence 999998764 2356799999999999975543 6899984
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=4.2e-16 Score=142.05 Aligned_cols=104 Identities=16% Similarity=0.132 Sum_probs=88.2
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECC----EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEE
Q 045512 365 SIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGN----KWIRTRTILDTLDPRWNEQYTWEVYD---PCTVITIGVF 436 (782)
Q Consensus 365 ~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~----~~~~T~~~~~t~nP~wne~~~f~v~~---~~~~l~i~V~ 436 (782)
..+.|.|+|++|++|.. .|. ||||++.+.+ ...+|++++++.||+|||.|.|.+.. ....|.|+||
T Consensus 24 ~~~~L~V~v~~a~~L~~------~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T d1wfma_ 24 QKAELFVTRLEAVTSNH------DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp TTTEEEEEEEEEECCCC------SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred CCCEEEEEEEEcCCCCC------CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEe
Confidence 34789999999999952 244 9999999932 35789999999999999999999874 2468999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCC
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTP 480 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 480 (782)
|++.++ ++++||++.|+|.++..+...++|++|....+
T Consensus 98 d~~~~~------~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~~ 135 (138)
T d1wfma_ 98 TCDRFS------RHSVAGELRLGLDGTSVPLGAAQWGELKTSGP 135 (138)
T ss_dssp ECCSSC------TTSCSEEEEEESSSSSSCTTCCEEEECCCCSC
T ss_pred eecccc------cceeeeEEEEEhHHccCCCCceEeEeCCCCCC
Confidence 999876 88999999999999987777789999987543
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=5.3e-17 Score=149.60 Aligned_cols=103 Identities=24% Similarity=0.318 Sum_probs=90.8
Q ss_pred cCCceeEEEecccccccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEec--
Q 045512 24 RGGDKTASSYDLVEQMHYLFVNVVKARNLPVMDVSGSLDPYVEVKLGN-----YKGIAKHLEKNQNPVWNQIFAFSKE-- 96 (782)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~i~~t~nP~wne~f~f~~~-- 96 (782)
.|.+.+++.|+- ..+.|.|+|++|+||+..+..+.+||||++++.+ .+++|+++++|.||+|||+|.|.+.
T Consensus 6 ~G~l~~sl~Y~~--~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~ 83 (145)
T d1dqva2 6 LGELNFSLCYLP--TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE 83 (145)
T ss_dssp CCEEEEEEEEET--TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSG
T ss_pred ceEEEEEEEEcC--CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehh
Confidence 678899999986 5579999999999999998889999999999964 2568999999999999999999865
Q ss_pred cCCCCeEEEEEEeCCCC-CCceeEEEEEEcccc
Q 045512 97 RLQSNLVEVTVKDKDIG-KDDFVGRVTFDLFEV 128 (782)
Q Consensus 97 ~~~~~~L~v~V~d~d~~-~d~~lG~~~i~l~~l 128 (782)
+.....|.|.|||++.. ++++||++.|++..+
T Consensus 84 ~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~ 116 (145)
T d1dqva2 84 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA 116 (145)
T ss_dssp GGGSCCCCCEEEECCSSSCCEEEEECCCSSCTT
T ss_pred hcCCCEEEEEEEecCCCCCCcEEEEEEECchHc
Confidence 34567899999999998 899999999999765
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=1.9e-15 Score=137.64 Aligned_cols=102 Identities=22% Similarity=0.329 Sum_probs=81.4
Q ss_pred CcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE-----CCEEEeeccccCCCCCccccEEEEEEeCC---CceEEEE
Q 045512 364 GSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKY-----GNKWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIG 434 (782)
Q Consensus 364 ~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~-----~~~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~ 434 (782)
+..+.|.|.|++|+||++.+. .+. ||||++++ ...+.||++++++.||.|||.|.|.+... ...|.|.
T Consensus 12 ~~~~~L~V~v~~a~nL~~~~~---~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~ 88 (137)
T d2cm5a1 12 TQQGGLIVGIIRCVHLAAMDA---NGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDIS 88 (137)
T ss_dssp TTTTEEEEEEEEEESCCCCST---TSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEE
T ss_pred CCCCEEEEEEEEEECCCCCCC---CCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEE
Confidence 445899999999999987653 355 99999998 23568999999999999999999998742 4579999
Q ss_pred EEeCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEce
Q 045512 435 VFDNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLL 476 (782)
Q Consensus 435 V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 476 (782)
|||++.++ +|++||++.|++..+..+ ..+||+|.
T Consensus 89 v~~~~~~~------~~~~iG~~~i~l~~~~~~--~~~W~~l~ 122 (137)
T d2cm5a1 89 VWDYDIGK------SNDYIGGCQLGISAKGER--LKHWYECL 122 (137)
T ss_dssp EEECCSSS------CCEEEEEEEEETTCCHHH--HHHHHHHH
T ss_pred eeeCCCCC------CCCEEEEEEeCccccCcc--hhhhhhHh
Confidence 99999876 889999999999875322 24455554
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.4e-15 Score=135.88 Aligned_cols=116 Identities=20% Similarity=0.262 Sum_probs=92.5
Q ss_pred cceEEEEEEeccccccCCCCCCCCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEE---CCEEE
Q 045512 328 SSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKY---GNKWI 403 (782)
Q Consensus 328 ~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~---~~~~~ 403 (782)
.|+|.++++.. +..+.|.|+|++|+||+.++.. .+. ||||++.+ +...+
T Consensus 8 ~G~l~~sl~Y~-------------------------~~~~~L~V~V~~a~~L~~~d~~--~~~~dpyV~v~l~~~~~~~~ 60 (138)
T d1ugka_ 8 LGTLFFSLEYN-------------------------FERKAFVVNIKEARGLPAMDEQ--SMTSDPYIKMTILPEKKHKV 60 (138)
T ss_dssp CCEEEEEEEEE-------------------------GGGTEEEEEEEEEESCCCCBTT--TTBCEEEEEEEEETTTCSEE
T ss_pred CEEEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCCCCC--CCccceEEEEEEcCCCCEeE
Confidence 58999988753 3347899999999999977642 344 99999999 45678
Q ss_pred eeccccCCCCCccccEEEEEEeCC----CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccccC-CcEEEEEEEce
Q 045512 404 RTRTILDTLDPRWNEQYTWEVYDP----CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTLET-DRLYTHYYPLL 476 (782)
Q Consensus 404 ~T~~~~~t~nP~wne~~~f~v~~~----~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L~ 476 (782)
||++++++.||.|||.|.|..... ...|+|+|||++.++ +|++||.+.|+|+++.. ......|..+.
T Consensus 61 kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~------~~~~iG~~~i~L~~~~~~~~~~~~~~~~~ 132 (138)
T d1ugka_ 61 KTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFS------RDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp ECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSC------CCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred eCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCCC------CCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence 999999999999999999974322 347999999999876 89999999999999853 33445565554
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=3.6e-15 Score=138.96 Aligned_cols=119 Identities=25% Similarity=0.282 Sum_probs=96.4
Q ss_pred ceecceEEEEEEeccccccCCCCCCCCCCCCccccccccCcceEEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEEC--C-
Q 045512 325 EKFSSKILIRFCLEAGYHVLDESTHFSSDLQPSSMSLRKGSIGILELGILSAKNLMPMTSKDGKLT-DAYCVAKYG--N- 400 (782)
Q Consensus 325 ~~~~G~l~l~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~--~- 400 (782)
.+..|+|.+.+++. +..+.|.|.|++|+||++.+. .+. ||||++++. +
T Consensus 8 ~~~~G~l~~sl~Y~-------------------------~~~~~L~V~V~~a~~L~~~~~---~~~~dpyV~v~l~~~~~ 59 (157)
T d1uowa_ 8 LEKLGDICFSLRYV-------------------------PTAGKLTVVILEAKNLKKMDV---GGLSDPYVKIHLMQNGK 59 (157)
T ss_dssp GGCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCST---TSCCCEEEEEEEEETTE
T ss_pred ceeeeEEEEEEEEc-------------------------CCCCEEEEEEEEEEEcccccC---CCCCCeeEEEEEecCCc
Confidence 34579999998753 345899999999999986543 356 999999983 2
Q ss_pred --EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCcCCCccEEEEEecccc------------
Q 045512 401 --KWIRTRTILDTLDPRWNEQYTWEVYDP---CTVITIGVFDNCHVNGSKDDAIDQRIGKVRIRLSTL------------ 463 (782)
Q Consensus 401 --~~~~T~~~~~t~nP~wne~~~f~v~~~---~~~l~i~V~d~~~~~~~~~~~~d~~lG~~~i~l~~l------------ 463 (782)
...+|++++++.||+|||.|.|.+... ...|.|+|||++.++ ++++||++.|++...
T Consensus 60 ~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~------~~~~iG~~~i~l~~~~~~~~hW~~~~~ 133 (157)
T d1uowa_ 60 RLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG------KNDAIGKVFVGYNSTGAELRHWSDMLA 133 (157)
T ss_dssp EEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS------CCCEEEEEEEETTCCHHHHHHHHHHHH
T ss_pred cccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCCCC------CCceeEEEEEecccCChhHHHHHHHHh
Confidence 246899999999999999999998753 347999999999876 899999999999763
Q ss_pred cCCcEEEEEEEcee
Q 045512 464 ETDRLYTHYYPLLV 477 (782)
Q Consensus 464 ~~~~~~~~~~~L~~ 477 (782)
..++.+.+||+|..
T Consensus 134 ~~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 134 NPRRPIAQWHTLQV 147 (157)
T ss_dssp STTCCEEEEEECBC
T ss_pred CCCCceeEeEeCCC
Confidence 23466789999974
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.8e-15 Score=137.91 Aligned_cols=109 Identities=23% Similarity=0.265 Sum_probs=80.2
Q ss_pred EEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eeeecccccCCCCCCcccceeEEEecCCC--CCeEEEEEEEcc
Q 045512 202 YYLRVFVFEAQDLVPSEEGRAPDAYVKIQLG--N---LVRVTRPSHVRSVNPVWNEEHMFVASEPF--EDLIIVTVEDRI 274 (782)
Q Consensus 202 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg--~---~~~kT~~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~d~d 274 (782)
+.|.|+|++|+||+..+..+.+||||++.+. + .+.+|+++++ +.||.|||+|.|.+.... ...|.|+|||++
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~ 93 (138)
T d1w15a_ 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESLEEISVEFLVLDSE 93 (138)
T ss_dssp TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred CEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECC-CCCCeECcEEEEEecHHHhCccEEEEEEEeCC
Confidence 3699999999999999998999999999983 2 3567888886 999999999999875433 346999999999
Q ss_pred CCCCCceeEEEEEeCCCccccc-------CCCCCCCCeeEEccC
Q 045512 275 GPGKDEILGREFIPVRNVPQRH-------ETTKLPDPRWFNLHK 311 (782)
Q Consensus 275 ~~~~d~~lG~~~i~l~~l~~~~-------~~~~~~~~~w~~L~~ 311 (782)
..+++++||++.|++....... ...+....+||.|..
T Consensus 94 ~~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~~ 137 (138)
T d1w15a_ 94 RGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 137 (138)
T ss_dssp TTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred CCCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEccc
Confidence 9999999999999998643211 012334556777654
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=1.9e-15 Score=134.09 Aligned_cols=113 Identities=14% Similarity=0.241 Sum_probs=88.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeccccCCCCCeeccEEEEEeccCCCCeEEEEEEeCCCCCC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGNY-----KGIAKHLEKNQNPVWNQIFAFSKERLQSNLVEVTVKDKDIGKD 115 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-----~~~T~~i~~t~nP~wne~f~f~~~~~~~~~L~v~V~d~d~~~d 115 (782)
.|+|.|....--+.+...+.+||||+|++++. ..+|+++++|+||+|||+|.|.+.+ ...|.|.|||+| +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~--~~~l~i~V~d~d---d 78 (123)
T d1bdya_ 4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAA---E 78 (123)
T ss_dssp EEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT--TCEEEEEEEEET---T
T ss_pred eEEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc--ccEEEEEEEEcc---c
Confidence 45566655543444556799999999999652 4679999999999999999999876 468999999985 7
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEEc
Q 045512 116 DFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWIG 165 (782)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (782)
+++|.+.+++.++...........+.|++|.. .|+|++++.+.
T Consensus 79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~-------~Gkl~l~v~~f 121 (123)
T d1bdya_ 79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP-------QAKVLMCVQYF 121 (123)
T ss_dssp EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-------SCEEEEEEEEE
T ss_pred cccCccEEehhheeeccccCCCcccEEEeCCC-------CEEEEEEEEEe
Confidence 89999999999986543223345679999963 29999998654
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=2.9e-15 Score=137.74 Aligned_cols=92 Identities=23% Similarity=0.222 Sum_probs=79.2
Q ss_pred eEEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeecccccCCCCCCcccceeEEEecCC--CCCeEEEEEEEc
Q 045512 201 LYYLRVFVFEAQDLVPSEEGRAPDAYVKIQLGN-----LVRVTRPSHVRSVNPVWNEEHMFVASEP--FEDLIIVTVEDR 273 (782)
Q Consensus 201 ~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~ 273 (782)
.+.|.|+|++|+||+..+..+.+||||++++.. .+.+|+++++ +.||.|||.|.|.+... ....|.|+|||+
T Consensus 19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~ 97 (145)
T d1dqva2 19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESVENVGLSIAVVDY 97 (145)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeC-CCCceecceEEEEEehhhcCCCEEEEEEEec
Confidence 346999999999999999889999999999964 2467888886 99999999999987532 345799999999
Q ss_pred cCCCCCceeEEEEEeCCCcc
Q 045512 274 IGPGKDEILGREFIPVRNVP 293 (782)
Q Consensus 274 d~~~~d~~lG~~~i~l~~l~ 293 (782)
+..+++++||++.|+++.+.
T Consensus 98 ~~~~~~~~iG~~~i~l~~~~ 117 (145)
T d1dqva2 98 DCIGHNEVIGVCRVGPEAAD 117 (145)
T ss_dssp CSSSCCEEEEECCCSSCTTC
T ss_pred CCCCCCcEEEEEEECchHcC
Confidence 99999999999999998763
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=2e-14 Score=127.35 Aligned_cols=104 Identities=13% Similarity=0.302 Sum_probs=83.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCC-CcEEEEEECCE-----EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCC
Q 045512 368 ILELGILSAKNLMPMTSKDGKLT-DAYCVAKYGNK-----WIRTRTILDTLDPRWNEQYTWEVYDPCTVITIGVFDNCHV 441 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~-dpyv~v~~~~~-----~~~T~~~~~t~nP~wne~~~f~v~~~~~~l~i~V~d~~~~ 441 (782)
.+.|.++.+..+++ ..+. ||||+|++.+. ..+|+++++|+||+|||+|+|.|.+ ...|.|.|||+|
T Consensus 6 ~~~~~~~~~~~~~~-----~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d-- 77 (123)
T d1bdya_ 6 RISFNSYELGSLQA-----EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA-- 77 (123)
T ss_dssp EEEEEEEECCTTCC-----CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET--
T ss_pred EEEEEEeecccCCC-----CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc--
Confidence 45555666666653 2345 99999999553 3578899999999999999999986 478999999974
Q ss_pred CCCCCCcCCCccEEEEEecccc-----cCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 442 NGSKDDAIDQRIGKVRIRLSTL-----ETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 442 ~~~~~~~~d~~lG~~~i~l~~l-----~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|+++|.+.|++.+| ..+...+.|++|. +.|+|+++++|
T Consensus 78 --------d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--------~~Gkl~l~v~~ 120 (123)
T d1bdya_ 78 --------EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMCVQY 120 (123)
T ss_dssp --------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEE
T ss_pred --------ccccCccEEehhheeeccccCCCcccEEEeCC--------CCEEEEEEEEE
Confidence 67999999999998 3467788999995 35999999987
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.3e-13 Score=119.06 Aligned_cols=109 Identities=20% Similarity=0.276 Sum_probs=83.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeecc--ccCCCCCeeccE-EEE-EeccCCCCeEEEEEEeC
Q 045512 41 YLFVNVVKARNLPVMDVSGSLDPYVEVKLGN------YKGIAKH--LEKNQNPVWNQI-FAF-SKERLQSNLVEVTVKDK 110 (782)
Q Consensus 41 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~--i~~t~nP~wne~-f~f-~~~~~~~~~L~v~V~d~ 110 (782)
.|.|+|++|++|+.+ ++||||+|++-| .+.+|++ ..++.||+|||. |.| .+..++...|.|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 689999999999864 479999999932 3344444 467899999976 444 35555567899999998
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcccceEEEEEEEE
Q 045512 111 DIGKDDFVGRVTFDLFEVPHRVPPDSPLAPQWYRLEDRKGDKITQGEIMLAVWI 164 (782)
Q Consensus 111 d~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (782)
+ |++||++.+++..+..+ -+|.+|.+..|+....+.|.+.+.+
T Consensus 78 d---~~~lG~~~ipl~~l~~G--------yR~vpL~~~~g~~l~~~~L~v~i~~ 120 (122)
T d2zkmx2 78 G---NKFLGHRIIPINALNSG--------YHHLCLHSESNMPLTMPALFIFLEM 120 (122)
T ss_dssp T---TEEEEEEEEEGGGBCCE--------EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred C---CCEEEEEEEEcccCcCC--------ceEEEccCCCcCCCCCceEEEEEEE
Confidence 5 79999999999999764 3788999988876544677666643
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.1e-11 Score=108.97 Aligned_cols=108 Identities=17% Similarity=0.317 Sum_probs=76.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCCCcEEEEEEC------CEEEeeccc--cCCCCCccccE-EEE-EEeCC-CceEEEEEE
Q 045512 368 ILELGILSAKNLMPMTSKDGKLTDAYCVAKYG------NKWIRTRTI--LDTLDPRWNEQ-YTW-EVYDP-CTVITIGVF 436 (782)
Q Consensus 368 ~l~v~v~~a~~L~~~~~~~~~~~dpyv~v~~~------~~~~~T~~~--~~t~nP~wne~-~~f-~v~~~-~~~l~i~V~ 436 (782)
.|.|+|++|++|+.. ..||||+|++- ..+.+|+++ .+++||.|||. |.| .+..+ ...|.|.||
T Consensus 2 tl~V~Visaq~L~~~------~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~ 75 (122)
T d2zkmx2 2 TLSITVISGQFLSER------SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM 75 (122)
T ss_dssp EEEEEEEEEESCCSS------CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred EEEEEEEEeeCCCCC------CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEE
Confidence 589999999999732 13999999982 234555543 56899999986 444 34444 348999999
Q ss_pred eCCCCCCCCCCcCCCccEEEEEecccccCCcEEEEEEEceeeCCCCCccccEEEEEEEE
Q 045512 437 DNCHVNGSKDDAIDQRIGKVRIRLSTLETDRLYTHYYPLLVLTPSGLKKNGELHLALRF 495 (782)
Q Consensus 437 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~~ 495 (782)
|++ |++||++.|+|+.|..|. +++||.+....- -..+.|.+.+++
T Consensus 76 D~d----------~~~lG~~~ipl~~l~~Gy---R~vpL~~~~g~~-l~~~~L~v~i~~ 120 (122)
T d2zkmx2 76 EEG----------NKFLGHRIIPINALNSGY---HHLCLHSESNMP-LTMPALFIFLEM 120 (122)
T ss_dssp ETT----------TEEEEEEEEEGGGBCCEE---EEEEEECTTCCE-EEEEEEEEEEEE
T ss_pred CCC----------CCEEEEEEEEcccCcCCc---eEEEccCCCcCC-CCCceEEEEEEE
Confidence 974 689999999999998874 678997643211 123455555543
|