Citrus Sinensis ID: 045533

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
Protein Sequence
KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHcccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHcccccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Coil and Loop (DISEMBL)
KEIEDAIQKLcpiyihsnspdlhtVSLHFRLLRQQGIKISCDVFEkfkddegrfKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKdldfttklpyaRDRLVELYFWdlgtyfepqyaFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ
Flexible Loop (DISEMBL)
KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQinhalyrplRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ
Low Complexity Region (SEG)
KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIllelhkeelnelTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ
Disordered region (IsUnstruct)
*****AIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLF*****
Disordered Region (DISOPRED)
KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ
Disordered Region (DISEMBL)
KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ
Disordered Region (DISPRO)
KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	242	2.2.26 [Sep-21-2011]
Q94JS8	560	(E)-beta-farnesene syntha	N/A	no	0.971	0.419	0.597	2e-78
Q6Q3H3	557	(-)-germacrene D synthase	yes	no	0.979	0.425	0.585	4e-77
Q6Q3H2	556	Valencene synthase OS=Vit	no	no	0.983	0.428	0.573	6e-76
E3W207	559	Sesquiterpene synthase OS	N/A	no	0.966	0.418	0.550	4e-74
F6M8H4	559	Probable sesquiterpene sy	N/A	no	0.966	0.418	0.534	9e-73
B5A435	559	Sesquiterpene synthase OS	N/A	no	0.966	0.418	0.546	2e-72
O49853	554	(+)-delta-cadinene syntha	N/A	no	0.966	0.422	0.546	5e-72
F6M8H7	562	Probable sesquiterpene sy	N/A	no	0.966	0.416	0.530	7e-72
B2KSJ5	571	(+)-gamma-cadinene syntha	N/A	no	0.929	0.394	0.543	1e-71
Q39760	554	(+)-delta-cadinene syntha	N/A	no	0.971	0.424	0.536	2e-71

>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1

 Score =  292 bits (747), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/246 (59%), Positives = 184/246 (74%), Gaps = 11/246 (4%)

Query: 1   KEIEDAIQKLCPIYIHS-NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
           KEIED + K+     H  +S DL+ VSL FRL RQQG+KISCDVF+KFKDDEG+FK SLI
Sbjct: 92  KEIEDELGKVS----HDLDSDDLYVVSLRFRLFRQQGVKISCDVFDKFKDDEGKFKESLI 147

Query: 60  NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVA---QDHVTPKLAEQINHALYR 116
           ND++GMLSLYEAAY+A+RGE ILDEAI FTTTHLKS+++     H    LAEQI H+L  
Sbjct: 148 NDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHLKSVISISDHSHANSNLAEQIRHSLQI 207

Query: 117 PLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLD 176
           PLRK   RLEARYF+ +   + D LH++TLL FAKLDFNIL   H++E + +T+WW DL 
Sbjct: 208 PLRKAAARLEARYFLDIY--SRDDLHDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLG 265

Query: 177 FTTKLPYARDRLVELYFWD-LGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELS 235
           F  K+PYARDR++E Y W  LG  +EP  AFGR   +++  +++ IDDT+DAYGT EEL+
Sbjct: 266 FPKKVPYARDRIIETYIWMLLGVSYEPNLAFGRIFASKVVCMITTIDDTFDAYGTFEELT 325

Query: 236 LFTEAV 241
           LFTEAV
Sbjct: 326 LFTEAV 331

Sesquiterpene cyclase catalyzing the production of beta-farnesene from farnesyl diphosphate.
Citrus junos (taxid: 135197)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 4EC: 7

>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1

 Score =  288 bits (736), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 141/241 (58%), Positives = 182/241 (75%), Gaps = 4/241 (1%)

Query: 2   EIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIND 61
           EI++ ++ +    + S   D++T SL FRLLRQQG  +SCD+F  FKD+EG FK SL +D
Sbjct: 94  EIDEVLKHMFDGSVVSAEEDVYTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSD 153

Query: 62  VQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKT 121
           V+GMLSLYEA +  V GE ILDEA+AFTTTHL+S  A  H +  LAEQ+ HAL +P+RK 
Sbjct: 154 VRGMLSLYEATHFRVHGEDILDEALAFTTTHLQS--ATKHSSNPLAEQVVHALKQPIRKG 211

Query: 122 LPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKL 181
           LPRLEAR++ S+  +  D  HNK LL  AKLDFN+L +LH++EL++++ WWKDLDF  KL
Sbjct: 212 LPRLEARHYFSVYQA--DDSHNKALLKLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKL 269

Query: 182 PYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAV 241
           P+ARDR+VE YFW LG YFEPQ+ F R+I+T++  + SIIDD YD YGTLEEL LFTEAV
Sbjct: 270 PFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTSIIDDIYDVYGTLEELELFTEAV 329

Query: 242 Q 242
           +
Sbjct: 330 E 330

Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.

Vitis vinifera (taxid: 29760)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 7

EC: 5

>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1

 Score =  283 bits (725), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 140/244 (57%), Positives = 184/244 (75%), Gaps = 6/244 (2%)

Query: 1   KEIEDAIQKLCPIYIHSNS--PDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL 58
           +EIE+A+Q +C  +   N    DL+ ++L FRLLRQQG  ISCD+F KF D+ GRFK +L
Sbjct: 91  QEIEEALQHICNSFHDCNDMDGDLYNIALGFRLLRQQGYTISCDIFNKFTDERGRFKEAL 150

Query: 59  INDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPL 118
           I+DV+GML LYEAA++ V GE IL +A+AFTTTHLK++V  + +   LAEQ+ HAL RP+
Sbjct: 151 ISDVRGMLGLYEAAHLRVHGEDILAKALAFTTTHLKAMV--ESLGYHLAEQVAHALNRPI 208

Query: 119 RKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFT 178
           RK L RLEAR+++S+    +   H+KTLL  AKLDFN++  LHKEEL+ L +WWK+LDF 
Sbjct: 209 RKGLERLEARWYISVYQDEA--FHDKTLLELAKLDFNLVQSLHKEELSNLARWWKELDFA 266

Query: 179 TKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFT 238
           TKLP+ARDRLVE YFW  G YFEPQY  GR+I+T++  + SI+DD +DAYGT EEL LF 
Sbjct: 267 TKLPFARDRLVEGYFWMHGVYFEPQYLRGRRILTKVIAMTSILDDIHDAYGTPEELKLFI 326

Query: 239 EAVQ 242
           EA++
Sbjct: 327 EAIE 330

Involved in the biosynthesis of valencene, a major volatile emitted from flowers of grapevine. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (+)-valencene and (-)-7-epi-alpha-selinene along with five minor products.

Vitis vinifera (taxid: 29760)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 8

EC: 6

>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1

 Score =  277 bits (709), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 137/249 (55%), Positives = 182/249 (73%), Gaps = 15/249 (6%)

Query: 2   EIEDAIQKLCPIYIHS--------NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGR 53
           EIE++++    IY+H+         S DL++V+L FRLLRQ G K+SCDVF+ F+D EG 
Sbjct: 91  EIEESLEH---IYLHTYVKNNCFQGSHDLYSVALWFRLLRQDGYKVSCDVFDNFRDYEGN 147

Query: 54  FKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHA 113
           FK+SL+ D +G+L LYEA +++V GE +LD+A+ F  T L+S+V  +H+   LAEQ+ HA
Sbjct: 148 FKNSLMEDAKGLLELYEATHLSVHGEEMLDDALEFAKTRLESIV--NHLNYPLAEQVRHA 205

Query: 114 LYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWK 173
           LYRPLRK LPRLEA YF  +  +   H HNK LL  AKLDFN+L  LH++EL ++ +WW+
Sbjct: 206 LYRPLRKGLPRLEAVYFFRIYEAY--HSHNKALLKLAKLDFNLLQSLHRKELGDMARWWR 263

Query: 174 DLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEE 233
            LDF TK P+ARDRLVE YFW LG YFEPQY+  R+I T++  ++S IDD YDAYGTL+E
Sbjct: 264 SLDFATKFPFARDRLVEGYFWILGVYFEPQYSLAREITTKVFAMISTIDDIYDAYGTLDE 323

Query: 234 LSLFTEAVQ 242
           L LFTEA+Q
Sbjct: 324 LKLFTEAIQ 332

Catalyzes alpha-humulene and delta-cadinene, as well as beta-elemene, the thermal rearrangement product of germacrene A and several other bicyclic sesquiterpenes when incubated with (2E,6E)-farnesyl diphosphate.

Santalum austrocaledonicum (taxid: 293154)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: -

>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1

 Score =  273 bits (698), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 133/249 (53%), Positives = 184/249 (73%), Gaps = 15/249 (6%)

Query: 2   EIEDAIQKLCPIYIHS--------NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGR 53
           EIE++++    IY+H+         S DL++V+L FRLLRQ G ++SCDVF KF+D+EG 
Sbjct: 91  EIEESLEH---IYLHTYVENTCFEGSDDLYSVALWFRLLRQNGYRVSCDVFNKFRDNEGN 147

Query: 54  FKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHA 113
           FK++L+ D +G+L LYEA +++V GE +LD+A+ FT T L+S+V+  H+   LAEQ+ HA
Sbjct: 148 FKNNLMEDAKGLLELYEATHLSVHGEEMLDDALEFTKTRLESVVS--HLNYPLAEQVRHA 205

Query: 114 LYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWK 173
           LY+PL K LPRLEA YF  +  + + H  NK LL  AKLDFN+L   HK+EL+++ +WWK
Sbjct: 206 LYQPLHKGLPRLEAVYFFRIYEAHASH--NKALLKLAKLDFNLLQSFHKKELSDIARWWK 263

Query: 174 DLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEE 233
            LDF TK+P+ARDRLVE YFW LG YFEPQY+  RKI+ ++  ++S IDD YDAYGT++E
Sbjct: 264 SLDFATKVPFARDRLVEGYFWVLGVYFEPQYSLARKIIIKVFTMISTIDDIYDAYGTVDE 323

Query: 234 LSLFTEAVQ 242
           L LFTEA++
Sbjct: 324 LKLFTEAIR 332

Sesquiterpene synthase.

Santalum album (taxid: 35974)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: -

>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1

 Score =  272 bits (695), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 136/249 (54%), Positives = 181/249 (72%), Gaps = 15/249 (6%)

Query: 2   EIEDAIQKLCPIYIHS--------NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGR 53
           EIE++++    IY+H+         S DL++V+L FRLLRQ G K+SCDVF+KF+D E  
Sbjct: 91  EIEESLEH---IYLHTYVENNCFQGSHDLYSVALWFRLLRQDGYKVSCDVFDKFRDYEDN 147

Query: 54  FKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHA 113
           FK+SL+ D +G+L LYEA +++V GE +LD+A+ F  T L+S+V  +H+   LAEQ+ HA
Sbjct: 148 FKNSLMEDAKGLLELYEATHLSVHGEEMLDDALEFAKTRLESIV--NHLNYPLAEQVRHA 205

Query: 114 LYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWK 173
           LYRPLRK LPRLEA YF  +  +   H  NK LL  AKLDFN+L  LHK+EL+++ +WWK
Sbjct: 206 LYRPLRKGLPRLEAVYFFRIYEAYDSH--NKALLKLAKLDFNLLQSLHKKELSDMARWWK 263

Query: 174 DLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEE 233
            LDF  K P+ARDRLVE YFW LG YFEPQY+  RKI+ ++  ++S IDD YDAYGTL+E
Sbjct: 264 SLDFAAKFPFARDRLVEGYFWVLGVYFEPQYSLARKIIIKVFTMISTIDDIYDAYGTLDE 323

Query: 234 LSLFTEAVQ 242
           L LFT+A+Q
Sbjct: 324 LELFTKAMQ 332

Sesquiterpene synthase producing the monocyclic sesquiterpene alcohol germacrene D-4-ol and helminthogermacrene and minor amounts of bicyclic compounds such as alpha-bulnesene, gamma-muurolene, alpha- and beta-selinenes, when incubated with farnesyl diphosphate.

Santalum album (taxid: 35974)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: -

>sp|O49853|DCS4_GOSAR (+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1

 Score =  270 bits (691), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 134/245 (54%), Positives = 182/245 (74%), Gaps = 11/245 (4%)

Query: 1   KEIEDAIQKLCPIYIHSNSP--DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL 58
           KEIED ++    IY ++N    DL+T SL FRLLR+ G  +SCDVF KFKD++G FKSS+
Sbjct: 91  KEIEDELEN---IYHNNNDAENDLYTTSLRFRLLREHGYNVSCDVFNKFKDEQGNFKSSV 147

Query: 59  INDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQ-DHVTPKLAEQINHALYRP 117
            +DVQG+L LY+A+Y+ V GE ILDEAI+FTT HL   V+  DH    L+E+++HAL + 
Sbjct: 148 TSDVQGLLELYQASYLRVHGEDILDEAISFTTNHLSLAVSSLDH---PLSEEVSHALKQS 204

Query: 118 LRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDF 177
           +R+ LPR+EAR+++S+      H  NK LL FAK+DFN+L  LH++EL+E+ +WWKDLDF
Sbjct: 205 IRRGLPRVEARHYLSVYQDIESH--NKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDF 262

Query: 178 TTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLF 237
             KLPYARDR+VE YFW  G YFEPQY+ GRK++T++  + SI+DDTYD+Y T EEL  +
Sbjct: 263 QRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPY 322

Query: 238 TEAVQ 242
           T A++
Sbjct: 323 TNAIE 327

Responsible for the cyclization of trans,trans-farnesyl diphosphate (FPP) to (+)-delta cadinene.

Gossypium arboreum (taxid: 29729)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 3

>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1

 Score =  270 bits (690), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 132/249 (53%), Positives = 182/249 (73%), Gaps = 15/249 (6%)

Query: 2   EIEDAIQKLCPIYIHS--------NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGR 53
           EIE++++    IY+H+         S DL++V+L FRLLRQ G K+SCDVF KF+D+EG 
Sbjct: 94  EIEESLKH---IYLHTYVENNCFEGSDDLYSVALWFRLLRQNGYKVSCDVFNKFRDNEGN 150

Query: 54  FKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHA 113
           FK++L+ D +G+L LYEA ++++ GE +LD+A+ FT T L+S+V+  H+   LAEQ+ HA
Sbjct: 151 FKNNLMEDAKGLLELYEATHVSIHGEEMLDDALEFTKTRLESVVS--HLNYPLAEQVRHA 208

Query: 114 LYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWK 173
           LY+PL + LPRLEA YF  +  + + H  NK LL  AKLDFN+L   HK+EL+++ +WWK
Sbjct: 209 LYQPLHRGLPRLEAVYFFRIYEAHASH--NKALLKLAKLDFNLLQSFHKKELSDIARWWK 266

Query: 174 DLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEE 233
            LDF  K P+ARDRLVE YFW LG YFEPQY+  RKI+ ++  ++S IDD YDAYGTL+E
Sbjct: 267 SLDFAAKFPFARDRLVEGYFWVLGVYFEPQYSLARKIIIKVFTMISTIDDIYDAYGTLDE 326

Query: 234 LSLFTEAVQ 242
           L LFT+A+Q
Sbjct: 327 LKLFTKAMQ 335

Sesquiterpene synthase.

Santalum murrayanum (taxid: 453085)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: -

>sp|B2KSJ5|GCSY1_CUCME (+)-gamma-cadinene synthase OS=Cucumis melo PE=1 SV=1

 Score =  269 bits (688), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 124/228 (54%), Positives = 173/228 (75%), Gaps = 3/228 (1%)

Query: 16  HSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMA 75
           +SN  DLH  +L FRLLRQQG +ISCD+F KF DD G+FK SL+ D +G+LSLYEA++M 
Sbjct: 118 NSNGEDLHITALLFRLLRQQGYRISCDIFLKFMDDNGKFKESLVEDERGLLSLYEASHMM 177

Query: 76  VRGEHILDEAIAFTTTHLKSLVAQ-DHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMI 134
             GE +L+EA+ FTTTHL++ + +  ++ P  A ++++AL  P+RK++PR++AR ++ + 
Sbjct: 178 GHGEALLEEALEFTTTHLQTYIHRYSNINPSFASEVSNALKLPIRKSVPRIKAREYLEIY 237

Query: 135 NSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFW 194
                H  N+TLL F+KLDFNIL +LH++EL+E+ +WWKDLD  TK P+ARDR+VE YFW
Sbjct: 238 QQHPSH--NETLLEFSKLDFNILQKLHQKELSEICRWWKDLDVPTKFPFARDRIVECYFW 295

Query: 195 DLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
            LG YFEPQY+ GRK++T++  I SI+DD YDAYGT EEL + T A+Q
Sbjct: 296 TLGAYFEPQYSVGRKMLTKVIAIASILDDIYDAYGTFEELQVLTPAIQ 343

Sesquiterpene synthase producing mainly delta- and gamma-cadinene with traces of several other sesquiterpenoids, including alpha-copaene. Associated with the production of sesquiterpenes responsible for the aroma of the fruit.

Cucumis melo (taxid: 3656)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 9

EC: 2

>sp|Q39760|DCS2_GOSAR (+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1

 Score =  269 bits (687), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/244 (53%), Positives = 183/244 (75%), Gaps = 9/244 (3%)

Query: 1   KEIEDAIQKLCPIYIHSNSP--DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL 58
           KEIED ++    IY ++N    DL+T SL FRLLR+ G  +SCDVF KFKD++G FKSS+
Sbjct: 91  KEIEDELEN---IYHNNNDAENDLYTTSLRFRLLREHGFNVSCDVFNKFKDEQGNFKSSV 147

Query: 59  INDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPL 118
            +DV+G+L LY+A+Y+ V GE ILDEAI+FTT HL   VA   +   L+E+++HAL + +
Sbjct: 148 TSDVRGLLELYQASYLRVHGEDILDEAISFTTNHLSLAVAS--LDYPLSEEVSHALKQSI 205

Query: 119 RKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFT 178
           R+ LPR+EAR+++S+      H  NK LL FAK+DFN++  LH++EL+E+++WWKDLDF 
Sbjct: 206 RRGLPRVEARHYLSVYQDIESH--NKVLLEFAKIDFNMVQLLHRKELSEISRWWKDLDFQ 263

Query: 179 TKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFT 238
            KLPYARDR+VE YFW  G YFEPQY+ GRK++T++  + SI+DDTYD+Y T EEL  +T
Sbjct: 264 RKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYT 323

Query: 239 EAVQ 242
           +A++
Sbjct: 324 KAIE 327

Responsible for the cyclization of trans,trans-farnesyl diphosphate (FPP) to (+)-delta cadinene.

Gossypium arboreum (taxid: 29729)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
261343328	548	terpene synthase 1 [Citrus sinensis]	1.0	0.441	0.983	1e-137
33316389	548	valencene synthase [Citrus sinensis]	1.0	0.441	0.979	1e-135
19880625	548	putative terpene synthase [Citrus x para	1.0	0.441	0.975	1e-135
9864189	555	terpene synthase [Citrus junos]	0.991	0.432	0.633	1e-83
313585892	551	Tps2-1 [Clausena lansium]	0.975	0.428	0.598	8e-79
255563621	558	(+)-delta-cadinene synthase isozyme A, p	0.975	0.422	0.597	9e-77
75250254	560	RecName: Full=(E)-beta-farnesene synthas	0.971	0.419	0.597	1e-76
300079902	560	(E)-beta-farnesene synthase [Citrus reti	0.971	0.419	0.593	2e-76
359493937	557	PREDICTED: (-)-germacrene D synthase [Vi	0.979	0.425	0.585	2e-75
75223414	557	RecName: Full=(-)-germacrene D synthase	0.979	0.425	0.585	2e-75

>gi|261343328|gb|ACX70155.1| terpene synthase 1 [Citrus sinensis]

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/242 (98%), Positives = 239/242 (98%)

Query: 1   KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN 60
           KEIEDAIQKLCPIYI SN  DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN
Sbjct: 80  KEIEDAIQKLCPIYIDSNRADLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN 139

Query: 61  DVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRK 120
           DVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRK
Sbjct: 140 DVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRK 199

Query: 121 TLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTK 180
           TLPRLEARYFMSMINSTSDHL+NKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTK
Sbjct: 200 TLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTK 259

Query: 181 LPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEA 240
           LPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEA
Sbjct: 260 LPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEA 319

Query: 241 VQ 242
           VQ
Sbjct: 320 VQ 321

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33316389|gb|AAQ04608.1|AF441124_1 valencene synthase [Citrus sinensis]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/242 (97%), Positives = 237/242 (97%)

Query: 1   KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN 60
           KEI DAIQKLCPIYI SN  DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN
Sbjct: 80  KEIGDAIQKLCPIYIDSNRADLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN 139

Query: 61  DVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRK 120
           DVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRK
Sbjct: 140 DVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRK 199

Query: 121 TLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTK 180
           TLPRLEARYFMSMINSTSDHL NKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTK
Sbjct: 200 TLPRLEARYFMSMINSTSDHLCNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTK 259

Query: 181 LPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEA 240
           LPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEA
Sbjct: 260 LPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEA 319

Query: 241 VQ 242
           VQ
Sbjct: 320 VQ 321

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19880625|gb|AAM00426.1|AF411120_1 putative terpene synthase [Citrus x paradisi]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/242 (97%), Positives = 237/242 (97%)

Query: 1   KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN 60
           KEIEDAI KLCPIYI SN  DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN
Sbjct: 80  KEIEDAILKLCPIYIDSNRADLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN 139

Query: 61  DVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRK 120
           DVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRK
Sbjct: 140 DVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRK 199

Query: 121 TLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTK 180
           TLPRLEARYFMSMINSTSDHL+NKTLLNFAKLDFNILLE HKEELNELTKWWKDLDFTTK
Sbjct: 200 TLPRLEARYFMSMINSTSDHLYNKTLLNFAKLDFNILLEPHKEELNELTKWWKDLDFTTK 259

Query: 181 LPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEA 240
           LPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEA
Sbjct: 260 LPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEA 319

Query: 241 VQ 242
           VQ
Sbjct: 320 VQ 321

Source: Citrus x paradisi

Species: Citrus x paradisi

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9864189|gb|AAG01339.1| terpene synthase [Citrus junos]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 154/243 (63%), Positives = 194/243 (79%), Gaps = 3/243 (1%)

Query: 1   KEIEDAIQKLC-PIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
           +EIEDA++K+    + +++  DL+TVSL FRLLRQQG K+ CDVF KFKDDEG+FK+SL+
Sbjct: 89  QEIEDAMEKIYHDDFDNNDDVDLYTVSLRFRLLRQQGFKVPCDVFAKFKDDEGKFKASLV 148

Query: 60  NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
            DV G+LSLYEA ++A+RGE ILDEAIAFT THL+S+V+QD     LAEQINH L  PLR
Sbjct: 149 RDVHGILSLYEAGHLAIRGEGILDEAIAFTRTHLQSMVSQDVCPNNLAEQINHTLDCPLR 208

Query: 120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTT 179
           + LPR+E R+F+S+     D  H+KTLL F+KLDFN++  +H++EL+ +T+WWKDLDFTT
Sbjct: 209 RALPRVETRFFLSVY--PRDDKHDKTLLKFSKLDFNLVQRIHQKELSAITRWWKDLDFTT 266

Query: 180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
           KLPYARDR+VELYFW +GTYFEP+Y   RKIMT+  Y  SIIDDT+DAYG  EEL LF E
Sbjct: 267 KLPYARDRIVELYFWIVGTYFEPKYTLARKIMTKTIYTASIIDDTFDAYGFFEELKLFAE 326

Query: 240 AVQ 242
           AVQ
Sbjct: 327 AVQ 329

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313585892|gb|ADR71055.1| Tps2-1 [Clausena lansium]

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 146/244 (59%), Positives = 192/244 (78%), Gaps = 8/244 (3%)

Query: 1   KEIEDAIQKLC--PIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL 58
           KEI+DA++K+   P     +  DL+ VSL FRLLRQ GIKISCDVFEKFKDD+G+FK+SL
Sbjct: 82  KEIDDALEKIGHDPF---DDKDDLYIVSLCFRLLRQHGIKISCDVFEKFKDDDGKFKASL 138

Query: 59  INDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPL 118
           +NDVQGMLSLYEAA++A+ GE ILDEAI FTTTHLKS V+   V    AEQI H+L  PL
Sbjct: 139 MNDVQGMLSLYEAAHLAIHGEDILDEAIVFTTTHLKSTVSNSPVNSTFAEQIRHSLRVPL 198

Query: 119 RKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFT 178
           RK +PRLE+RYF+ +   + D LH+KTLLNFAKLDFNIL  +H++E +E+T+WW+D DF 
Sbjct: 199 RKAVPRLESRYFLDIY--SRDDLHDKTLLNFAKLDFNILQAMHQKEASEMTRWWRDFDFL 256

Query: 179 TKLPYARDRLVELYFWDL-GTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLF 237
            KLPY RDR+VELYFW L G  ++P+++ GR  ++++  + +++DDT+DAYGT +EL++F
Sbjct: 257 KKLPYIRDRVVELYFWILVGVSYQPKFSTGRIFLSKIICLETLVDDTFDAYGTFDELAIF 316

Query: 238 TEAV 241
           TEAV
Sbjct: 317 TEAV 320

Source: Clausena lansium

Species: Clausena lansium

Genus: Clausena

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563621|ref|XP_002522812.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|223537896|gb|EEF39510.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|350284786|gb|AEQ27766.1| alpha-copaene synthase [Ricinus communis]

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 144/241 (59%), Positives = 186/241 (77%), Gaps = 5/241 (2%)

Query: 2   EIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIND 61
           EIED +QK+   Y   +  DL+TV+L FRLLRQ GIK+SC +FEKFKD EG FK+SLIND
Sbjct: 95  EIEDVLQKVYHDY-SDDEDDLNTVALRFRLLRQHGIKVSCAIFEKFKDSEGNFKTSLIND 153

Query: 62  VQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKT 121
             GMLSLYEA ++++RGE +LDEA+AFTTT+L+S++ Q  +   LA QI+ AL RP+RK 
Sbjct: 154 ALGMLSLYEATHLSIRGEDVLDEALAFTTTNLQSVLPQ--LNTHLAAQISRALNRPIRKY 211

Query: 122 LPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKL 181
           LPRLEAR ++ +    ++  +N TLLNFAKLDFN+L ELH++ELN +TKWWK LD  TKL
Sbjct: 212 LPRLEARNYIDIY--ATEESYNTTLLNFAKLDFNMLQELHQKELNVVTKWWKSLDVATKL 269

Query: 182 PYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAV 241
           PYARDR+VE YFW +G YFEPQY+F R +MT++  I S++DDTYD Y T EEL + TEA+
Sbjct: 270 PYARDRVVECYFWMVGVYFEPQYSFARIMMTKIIAITSLLDDTYDNYATGEELEILTEAI 329

Query: 242 Q 242
           +
Sbjct: 330 E 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75250254|sp|Q94JS8.1|FARS_CITJU RecName: Full=(E)-beta-farnesene synthase; Short=CjFS; AltName: Full=Terpene synthase 10 gi|14134188|gb|AAK54279.1| (E)-beta-farnesene synthase [Citrus junos]

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 147/246 (59%), Positives = 184/246 (74%), Gaps = 11/246 (4%)

Query: 1   KEIEDAIQKLCPIYIHS-NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
           KEIED + K+     H  +S DL+ VSL FRL RQQG+KISCDVF+KFKDDEG+FK SLI
Sbjct: 92  KEIEDELGKVS----HDLDSDDLYVVSLRFRLFRQQGVKISCDVFDKFKDDEGKFKESLI 147

Query: 60  NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVA---QDHVTPKLAEQINHALYR 116
           ND++GMLSLYEAAY+A+RGE ILDEAI FTTTHLKS+++     H    LAEQI H+L  
Sbjct: 148 NDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHLKSVISISDHSHANSNLAEQIRHSLQI 207

Query: 117 PLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLD 176
           PLRK   RLEARYF+ +   + D LH++TLL FAKLDFNIL   H++E + +T+WW DL 
Sbjct: 208 PLRKAAARLEARYFLDIY--SRDDLHDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLG 265

Query: 177 FTTKLPYARDRLVELYFWD-LGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELS 235
           F  K+PYARDR++E Y W  LG  +EP  AFGR   +++  +++ IDDT+DAYGT EEL+
Sbjct: 266 FPKKVPYARDRIIETYIWMLLGVSYEPNLAFGRIFASKVVCMITTIDDTFDAYGTFEELT 325

Query: 236 LFTEAV 241
           LFTEAV
Sbjct: 326 LFTEAV 331

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300079902|gb|ADJ67476.1| (E)-beta-farnesene synthase [Citrus reticulata]

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/246 (59%), Positives = 184/246 (74%), Gaps = 11/246 (4%)

Query: 1   KEIEDAIQKLCPIYIHS-NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
           KEIED + K+     H  +S DL+ VSL FRL RQQG+KISCDVF+KFKDDEG+FK SLI
Sbjct: 92  KEIEDELGKVS----HDLDSDDLYVVSLRFRLFRQQGVKISCDVFDKFKDDEGKFKESLI 147

Query: 60  NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVA---QDHVTPKLAEQINHALYR 116
           ND++GMLSLYEAAY+A+RGE ILDEAI FTTTHLKS+++     HV   LAEQI H+L  
Sbjct: 148 NDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTHLKSVISISDHSHVNSNLAEQIRHSLQI 207

Query: 117 PLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLD 176
           PLRK   RLEARYF+ +   + D LH++TLL FAKLDFNIL   H++E + +T+WW DL 
Sbjct: 208 PLRKAAARLEARYFLDIY--SRDDLHDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLG 265

Query: 177 FTTKLPYARDRLVELYFWD-LGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELS 235
           F  K+PYARDR++E Y W  LG  +EP  AFGR   +++  +++ IDDT+DAYGT EE++
Sbjct: 266 FPKKVPYARDRIIETYIWMLLGVSYEPNLAFGRIFASKVVCMITTIDDTFDAYGTFEEIT 325

Query: 236 LFTEAV 241
           LFTE V
Sbjct: 326 LFTEVV 331

Source: Citrus reticulata

Species: Citrus reticulata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 141/241 (58%), Positives = 182/241 (75%), Gaps = 4/241 (1%)

Query: 2   EIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIND 61
           EI++ ++ +    + S   D++T SL FRLLRQQG  +SCD+F  FKD+EG FK SL +D
Sbjct: 94  EIDEVLKHMFDGSVVSAEEDVYTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSD 153

Query: 62  VQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKT 121
           V+GMLSLYEA +  V GE ILDEA+AFTTTHL+S  A  H +  LAEQ+ HAL +P+RK 
Sbjct: 154 VRGMLSLYEATHFRVHGEDILDEALAFTTTHLQS--ATKHSSNPLAEQVVHALKQPIRKG 211

Query: 122 LPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKL 181
           LPRLEAR++ S+  +  D  HNK LL  AKLDFN+L +LH++EL++++ WWKDLDF  KL
Sbjct: 212 LPRLEARHYFSVYQA--DDSHNKALLKLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKL 269

Query: 182 PYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAV 241
           P+ARDR+VE YFW LG YFEPQ+ F R+I+T++  + SIIDD YD YGTLEEL LFTEAV
Sbjct: 270 PFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTSIIDDIYDVYGTLEELELFTEAV 329

Query: 242 Q 242
           +
Sbjct: 330 E 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 141/241 (58%), Positives = 182/241 (75%), Gaps = 4/241 (1%)

Query: 2   EIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIND 61
           EI++ ++ +    + S   D++T SL FRLLRQQG  +SCD+F  FKD+EG FK SL +D
Sbjct: 94  EIDEVLKHMFDGSVVSAEEDVYTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSD 153

Query: 62  VQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKT 121
           V+GMLSLYEA +  V GE ILDEA+AFTTTHL+S  A  H +  LAEQ+ HAL +P+RK 
Sbjct: 154 VRGMLSLYEATHFRVHGEDILDEALAFTTTHLQS--ATKHSSNPLAEQVVHALKQPIRKG 211

Query: 122 LPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKL 181
           LPRLEAR++ S+  +  D  HNK LL  AKLDFN+L +LH++EL++++ WWKDLDF  KL
Sbjct: 212 LPRLEARHYFSVYQA--DDSHNKALLKLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKL 269

Query: 182 PYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAV 241
           P+ARDR+VE YFW LG YFEPQ+ F R+I+T++  + SIIDD YD YGTLEEL LFTEAV
Sbjct: 270 PFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTSIIDDIYDVYGTLEELELFTEAV 329

Query: 242 Q 242
           +
Sbjct: 330 E 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	242
UNIPROTKB|B5A435	559	B5A435 "Sesquiterpene synthase	0.979	0.423	0.524	3.7e-64
UNIPROTKB|B2KSJ5	571	B2KSJ5 "(+)-gamma-cadinene syn	0.929	0.394	0.517	1.8e-62
UNIPROTKB|J7LJN5	555	J7LJN5 "Beta-caryophyllene syn	0.987	0.430	0.487	1.1e-57
UNIPROTKB|E2E2N7	555	TPS4 "Bicyclogermacrene syntha	0.966	0.421	0.473	9.6e-57
UNIPROTKB|J7LP58	564	J7LP58 "Alpha-copaene/delta-ca	0.983	0.421	0.481	2.9e-55
UNIPROTKB|Q49SP5	554	Q49SP5 "Germacrene A synthase"	0.983	0.429	0.441	1.3e-52
UNIPROTKB|B3TPQ6	550	B3TPQ6 "Beta-cubebene synthase	0.979	0.430	0.448	4.4e-52
UNIPROTKB|J7LMP2	565	J7LMP2 "Bicyclogermacrene synt	0.983	0.421	0.444	7.2e-52
UNIPROTKB|Q49SP4	545	Q49SP4 "Germacrene D synthase	0.966	0.429	0.430	2.4e-51
UNIPROTKB|Q672F7	595	EBOS "Tricyclene synthase EBOS	0.975	0.396	0.438	5.8e-50

UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 129/246 (52%), Positives = 171/246 (69%)

Query:     2 EIEDAIQKL-CPIYIHSN----SPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKS 56
             EIE++++ +    Y+ +N    S DL++V+L FRLLRQ G K+SCDVF+KF+D E  FK+
Sbjct:    91 EIEESLEHIYLHTYVENNCFQGSHDLYSVALWFRLLRQDGYKVSCDVFDKFRDYEDNFKN 150

Query:    57 SLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYR 116
             SL+ D +G+L LYEA +++V GE +LD+A+ F  T L+S+V  +H+   LAEQ+ HALYR
Sbjct:   151 SLMEDAKGLLELYEATHLSVHGEEMLDDALEFAKTRLESIV--NHLNYPLAEQVRHALYR 208

Query:   117 PLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLD 176
             PLRK LPRLEA YF  +  +   H  NK LL  AKLDFN+             +WWK LD
Sbjct:   209 PLRKGLPRLEAVYFFRIYEAYDSH--NKALLKLAKLDFNLLQSLHKKELSDMARWWKSLD 266

Query:   177 FTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSL 236
             F  K P+ARDRLVE YFW LG YFEPQY+  RKI+ ++  ++S IDD YDAYGTL+EL L
Sbjct:   267 FAAKFPFARDRLVEGYFWVLGVYFEPQYSLARKIIIKVFTMISTIDDIYDAYGTLDELEL 326

Query:   237 FTEAVQ 242
             FT+A+Q
Sbjct:   327 FTKAMQ 332

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 118/228 (51%), Positives = 162/228 (71%)

Query:    16 HSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMA 75
             +SN  DLH  +L FRLLRQQG +ISCD+F KF DD G+FK SL+ D +G+LSLYEA++M 
Sbjct:   118 NSNGEDLHITALLFRLLRQQGYRISCDIFLKFMDDNGKFKESLVEDERGLLSLYEASHMM 177

Query:    76 VRGEHILDEAIAFTTTHLKSLVAQ-DHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMI 134
               GE +L+EA+ FTTTHL++ + +  ++ P  A ++++AL  P+RK++PR++AR ++ + 
Sbjct:   178 GHGEALLEEALEFTTTHLQTYIHRYSNINPSFASEVSNALKLPIRKSVPRIKAREYLEIY 237

Query:   135 NSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFW 194
                  H  N+TLL F+KLDFNI             +WWKDLD  TK P+ARDR+VE YFW
Sbjct:   238 QQHPSH--NETLLEFSKLDFNILQKLHQKELSEICRWWKDLDVPTKFPFARDRIVECYFW 295

Query:   195 DLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
              LG YFEPQY+ GRK++T++  I SI+DD YDAYGT EEL + T A+Q
Sbjct:   296 TLGAYFEPQYSVGRKMLTKVIAIASILDDIYDAYGTFEELQVLTPAIQ 343

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA

UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 120/246 (48%), Positives = 161/246 (65%)

Query:     1 KEIEDAIQKLC---PIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSS 57
             K ++D   + C     Y H N  DLHTV+L FRLLRQQG  IS + F KF D  G+F+ S
Sbjct:    91 KSLQDIYLRCCNDKDDYDH-NQTDLHTVALRFRLLRQQGYNISSETFNKFTDRNGKFEES 149

Query:    58 LINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPK-LAEQINHALYR 116
             L +DV+GMLSLYEAA+  V+GE ILDEA+ F++++LKS++A++H++   L  +I  A   
Sbjct:   150 LADDVRGMLSLYEAAHCGVQGEKILDEALVFSSSNLKSILAKNHMSNSGLTARIEEAFDT 209

Query:   117 PLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLD 176
             P+RK L    AR FMSM     D  H++ LL FA+LDFN             T+WWK+LD
Sbjct:   210 PIRKCLTNFGARKFMSMYEE--DESHSEALLKFARLDFNFSQKLHQKEISDLTRWWKELD 267

Query:   177 FTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSL 236
             F TKLP+ARDR+VE Y W LG + EPQY   R  ++++  + S+IDD YD  GTL+EL L
Sbjct:   268 FKTKLPFARDRMVECYCWTLGIHPEPQYNLARNFLSKVIMLASVIDDIYDVRGTLDELQL 327

Query:   237 FTEAVQ 242
             FT+A+Q
Sbjct:   328 FTDAIQ 333

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901937 "beta-caryophyllene biosynthetic process" evidence=IDA

UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 117/247 (47%), Positives = 167/247 (67%)

Query:     1 KEIEDAIQKLCPIYIHSNSP----DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKS 56
             KEI D++      YIH NS     ++ T +L FRLLRQQG ++ CDVF KF D EG F +
Sbjct:    92 KEIHDSLN-----YIHENSQHNDDEVRTTALRFRLLRQQGYRVPCDVFRKFTDGEGNFAT 146

Query:    57 SLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHV-TPKLAEQINHALY 115
             +L NDV+G+L LYEA+++A RGE ILD A+ F+++HL++L+ Q  V +  L+++++ AL 
Sbjct:   147 ALTNDVEGLLELYEASHLATRGEEILDRAMEFSSSHLQALLNQHLVGSVSLSKRVDEALK 206

Query:   116 RPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDL 175
              P+RKTL RL AR F+S+     D   N+ LLNFAKLDFN+            T+WWK L
Sbjct:   207 MPIRKTLTRLGARKFISLYQE--DESRNELLLNFAKLDFNMVQKMHQRELSDATRWWKKL 264

Query:   176 DFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELS 235
             +   ++PYARDR+VE +FW +G YFEP YA  R+I+++   + SI+DDTY+ Y TL+EL 
Sbjct:   265 EVAKRMPYARDRVVECFFWIVGVYFEPCYATARRILSKAINMASIVDDTYE-YATLDELQ 323

Query:   236 LFTEAVQ 242
             + T+A+Q
Sbjct:   324 ILTDAIQ 330

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 118/245 (48%), Positives = 158/245 (64%)

Query:     1 KEIEDAIQKLCPIY--IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL 58
             +EI+ A++ L   +     +S D++  SL FRLLRQ G +ISC++FEKFKD  G FK   
Sbjct:    97 EEIDQALRYLFETFHDYSEDSQDMYANSLSFRLLRQHGYRISCEIFEKFKDANGGFKIPN 156

Query:    59 INDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPL 118
             I  V GML  YEA ++ VRGE ILD    F+  +LKS++    ++  LA Q++ AL +  
Sbjct:   157 IEGVMGMLEFYEATHLRVRGEDILDHGFVFSRNYLKSVLPS--LSNPLAAQVDRALNQNS 214

Query:   119 -RKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDF 177
              R+ LPRLEAR+FMS+    + H  ++ LL  AKL+FNI            ++WWK +D 
Sbjct:   215 NRRGLPRLEARHFMSVYEQYASH--DQALLKLAKLNFNILQSLHKVELSEISRWWKGVDI 272

Query:   178 TTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLF 237
                 PYARDR+VELYFW LG YFEPQYA GRKI T++  I S++DDT+DAYGT EEL +F
Sbjct:   273 ARNFPYARDRIVELYFWVLGVYFEPQYAVGRKITTKVIAIASLLDDTFDAYGTFEELRIF 332

Query:   238 TEAVQ 242
              EAV+
Sbjct:   333 AEAVE 337

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901928 "cadinene biosynthetic process" evidence=IDA

GO:1901931 "alpha-copaene biosynthetic process" evidence=IDA

UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 109/247 (44%), Positives = 159/247 (64%)

Query:     1 KEIEDAIQKLCPI-----YIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFK 55
             KEIE+ ++ L  +     Y      DL+T +LHFRL RQ G  IS  +F K+ D  G+FK
Sbjct:    84 KEIEEKMKHLFNLIKADNYKDHEGCDLYTDALHFRLFRQHGYPISSGIFNKWMDGNGKFK 143

Query:    56 SSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALY 115
              S+ +D +G+LSLYEA  +   G+ +LDEA+ F T  LKS+ A  ++   L +Q+ HAL+
Sbjct:   144 ESIKSDAKGLLSLYEACCLRTHGDTLLDEALVFATASLKSMAA--NLASPLRKQVEHALF 201

Query:   116 RPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDL 175
             + L   +PR+EAR+F++      +H  N+ LL FAKLDFN             +KWWKDL
Sbjct:   202 QHLHFGIPRVEARHFITFYEE-EEH-KNEMLLRFAKLDFNALQALHKEELSEISKWWKDL 259

Query:   176 DFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELS 235
             D  +KLPYARDR+VE YFW +G Y++P+Y+  R ++T+   + +I+DDTYD+YGTLEEL 
Sbjct:   260 DLISKLPYARDRVVESYFWAVGVYYQPKYSRARIMLTKTIAMTAILDDTYDSYGTLEELD 319

Query:   236 LFTEAVQ 242
             + T+A++
Sbjct:   320 VLTKAIE 326

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA

UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 109/243 (44%), Positives = 150/243 (61%)

Query:     2 EIEDAIQKLCPIYIHSNSP--DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
             EI+ A+ ++   +I+      DL T++L FRLLRQQG  +S  VF KFKDDEG F S L 
Sbjct:    85 EIDKALGQMYDDHINGKDDGFDLQTLALQFRLLRQQGYNVSSGVFAKFKDDEGNFSSILS 144

Query:    60 NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
              D  G+LSLYEAA++   G+ ILDEAI FTT HLKS +   HV+  L + +  AL  PL 
Sbjct:   145 KDTHGLLSLYEAAFLGTHGDDILDEAITFTTVHLKSTLP--HVSAPLTKLVELALEIPLH 202

Query:   120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTT 179
             + + RL+ R+++S+     D   N  LL F+KL+F              + WWK++D   
Sbjct:   203 RRMERLQTRFYISIYEE--DRERNDVLLEFSKLEFLRLQSLHQRELRDISLWWKEMDLLA 260

Query:   180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
             KLP+ RDR++E YFW +G YFEP Y+  R IMT++    +++DDTYD YGTLEEL L T 
Sbjct:   261 KLPFTRDRVLEGYFWTVGVYFEPHYSRARMIMTKMIAFATVMDDTYDVYGTLEELELLTA 320

Query:   240 AVQ 242
              ++
Sbjct:   321 TIE 323

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA

UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 109/245 (44%), Positives = 158/245 (64%)

Query:     1 KEIEDAIQKLCPIYIH--SNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL 58
             +EI+ A+Q L   +     ++ DL+  SL FRLLRQQG ++SC++FEKFKD +G F    
Sbjct:    97 EEIDQALQCLFERHHEYCKDNHDLYANSLSFRLLRQQGYRVSCEIFEKFKDVKGNFMLPN 156

Query:    59 INDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPL 118
               +V G+L  YEA ++ V GE +LD     +  +L+S++    +T  LAEQ++HAL++  
Sbjct:   157 NGEVMGVLEFYEATHLRVHGEDLLDHDFVLSREYLESVLPS--LTNPLAEQVDHALHQHS 214

Query:   119 -RKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDF 177
              R+ L RLEAR++M +    + H  ++ LL  AKLDFN+            ++WWK +D 
Sbjct:   215 NRRGLSRLEARHYMPVYEQYASH--DQYLLKLAKLDFNMLQSLHKEELSELSRWWKGIDV 272

Query:   178 TTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLF 237
                LPYARDR+VE YFW LG YFEP+YA  RKI+ ++  + SIIDDT+DAYGT EEL +F
Sbjct:   273 ARNLPYARDRIVETYFWILGVYFEPEYAAARKILVKVQSLFSIIDDTFDAYGTFEELQIF 332

Query:   238 TEAVQ 242
             T+A++
Sbjct:   333 TQALE 337

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901934 "bicyclogermacrene biosynthetic process" evidence=IDA

UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 105/244 (43%), Positives = 158/244 (64%)

Query:     1 KEIEDAIQKLCPIYIH--SNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL 58
             +EI++A++ L   + +   ++ D++  +L FRLLRQ G K+SC+VF+KFKD E  FK   
Sbjct:    81 EEIDEALRNLLAKFENYCKDNHDMYATALSFRLLRQHGYKVSCEVFDKFKDGEDGFK--- 137

Query:    59 INDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYR-P 117
             + +V  +L L+EA +M + GE +LD+A  FT  +L+S+ A   ++  +A+Q+++AL    
Sbjct:   138 VEEVMAVLELFEATHMRIHGEDVLDQAFVFTRNYLQSIHAT--LSNPIAKQVHNALNGYS 195

Query:   118 LRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDF 177
              R+ +PR+EAR ++ +        H+K LL  AKLDFN+             +WWKDL+ 
Sbjct:   196 CRRGMPRIEARKYIPIYEEYG--CHHKALLKLAKLDFNLLQSMHKRELTQLYRWWKDLEM 253

Query:   178 TTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLF 237
              TKLPY RDRLVE YFWD+G YFEPQYA  R I+ ++  ++SI DDT+DAYG  +EL LF
Sbjct:   254 PTKLPYIRDRLVETYFWDMGFYFEPQYALARNILVKVQCLVSIFDDTFDAYGAFKELQLF 313

Query:   238 TEAV 241
              +A+
Sbjct:   314 KDAI 317

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA

UNIPROTKB|Q672F7 EBOS "Tricyclene synthase EBOS, chloroplastic" [Lotus japonicus (taxid:34305)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 107/244 (43%), Positives = 155/244 (63%)

Query:     1 KEIEDAIQKLCPIY--IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL 58
             KEI + + K   +   +H +   L   +L FRLLR+ G  +S D+FE+F D  G FK+SL
Sbjct:   126 KEIREVLNKFLSLNTCVHRS---LDKTALCFRLLREYGSDVSADIFERFLDQNGNFKTSL 182

Query:    59 INDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPL 118
             +N+V+GMLSLYEA++++  GE ILD+A AFT+ HLKS+  +D +   L EQ+NHAL  PL
Sbjct:   183 VNNVKGMLSLYEASFLSYEGEQILDKANAFTSFHLKSIHEED-INNILLEQVNHALELPL 241

Query:   119 RKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFT 178
              + + RLEAR++    +   D   N  LL  AKLDFN+            ++WWK +   
Sbjct:   242 HRRIHRLEARWYTESYSRRKDA--NWVLLEAAKLDFNMVQSTLQKDLQEMSRWWKGMGLA 299

Query:   179 TKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFT 238
              KL ++RDRL+E +FW +G  FEP+Y+  RK +T++  +++ IDD YD +GTLEEL LFT
Sbjct:   300 PKLSFSRDRLMECFFWTVGMAFEPKYSDLRKGLTKVTSLITTIDDIYDVHGTLEELELFT 359

Query:   239 EAVQ 242
               V+
Sbjct:   360 AIVE 363

GO:0008152 "metabolic process" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0010333 "terpene synthase activity" evidence=IDA

GO:0080027 "response to herbivore" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.2.3	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027449001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (557 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	242
cd00684	542	cd00684, Terpene_cyclase_plant_C1, Plant Terpene C	1e-123
pfam01397	177	pfam01397, Terpene_synth, Terpene synthase, N-term	1e-52
pfam03936	270	pfam03936, Terpene_synth_C, Terpene synthase famil	3e-43
cd00868	284	cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla	8e-35
PLN02592	800	PLN02592, PLN02592, ent-copalyl diphosphate syntha	1e-20
PLN02279	784	PLN02279, PLN02279, ent-kaur-16-ene synthase	3e-18
cd00385	243	cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth	1e-04

>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1

 Score =  359 bits (925), Expect = e-123
 Identities = 132/249 (53%), Positives = 176/249 (70%), Gaps = 12/249 (4%)

Query: 1   KEIEDAIQKLCPIYIH------SNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRF 54
            EI++ +     IY +      SN  DL+T +L FRLLRQ G  +S DVF+KFKD++G+F
Sbjct: 74  DEIKEILDY---IYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKF 130

Query: 55  KSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQD-HVTPKLAEQINHA 113
           K SL  DV+GMLSLYEA++++  GE ILDEA++FTT HL+  +  +  + P L+ +I +A
Sbjct: 131 KESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYA 190

Query: 114 LYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWK 173
           L  PL  +LPRLEAR+++       +  HN+TLL  AKLDFNIL  LH+EEL  L++WWK
Sbjct: 191 LEIPLHASLPRLEARWYIEFYEQ--EDDHNETLLELAKLDFNILQALHQEELKILSRWWK 248

Query: 174 DLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEE 233
           DLD  +KLP+ARDRLVE YFW  GTYFEPQY+  R  + +   ++++IDDTYD YGTLEE
Sbjct: 249 DLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEE 308

Query: 234 LSLFTEAVQ 242
           L LFTEAV+
Sbjct: 309 LELFTEAVE 317

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542

>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain

 Score =  168 bits (427), Expect = 1e-52
 Identities = 56/116 (48%), Positives = 80/116 (68%), Gaps = 2/116 (1%)

Query: 1   KEIEDAIQKL--CPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL 58
           KEI++ + ++            DL+T +L FRLLRQ G  +S DVF KFKD++G+FK SL
Sbjct: 62  KEIKEILDQIYRNWDDNDEEEDDLYTTALAFRLLRQHGYDVSSDVFNKFKDEDGKFKESL 121

Query: 59  INDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHAL 114
            NDV+G+LSLYEA+++   GE ILDEA++FTT HL+SL++       LA+++ HAL
Sbjct: 122 TNDVKGLLSLYEASHLRTHGEDILDEALSFTTKHLESLLSSLSSPDNLAKEVEHAL 177

It has been suggested that this gene family be designated tps (for terpene synthase). It has been split into six subgroups on the basis of phylogeny, called tpsa-tpsf. tpsa includes vetispiridiene synthase, 5-epi- aristolochene synthase, and (+)-delta-cadinene synthase. tpsb includes (-)-limonene synthase. tpsc includes kaurene synthase A. tpsd includes taxadiene synthase, pinene synthase, and myrcene synthase. tpse includes kaurene synthase B. tpsf includes linalool synthase. Length = 177

>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain

 Score =  147 bits (372), Expect = 3e-43
 Identities = 59/97 (60%), Positives = 74/97 (76%)

Query: 146 LLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYA 205
           LL  AKLDFN+L  LH++EL ELT+WWK+L   +KLP+ARDRLVE YFW   +YFEPQY+
Sbjct: 1   LLELAKLDFNLLQALHQQELKELTRWWKELGLASKLPFARDRLVECYFWAAASYFEPQYS 60

Query: 206 FGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
             R    +   +L++IDDTYD YGTLEEL LFT+AV+
Sbjct: 61  DARIAAAKTAALLTVIDDTYDRYGTLEELELFTDAVE 97

It has been suggested that this gene family be designated tps (for terpene synthase). It has been split into six subgroups on the basis of phylogeny, called tpsa-tpsf. tpsa includes vetispiridiene synthase, 5-epi- aristolochene synthase, and (+)-delta-cadinene synthase. tpsb includes (-)-limonene synthase. tpsc includes kaurene synthase A. tpsd includes taxadiene synthase, pinene synthase, and myrcene synthase. tpse includes kaurene synthase B. tpsf includes linalool synthase. Length = 270

>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1

 Score =  125 bits (315), Expect = 8e-35
 Identities = 52/83 (62%), Positives = 65/83 (78%)

Query: 160 LHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILS 219
           LH+EEL EL++WWK+L    KLP+ARDRLVE YFW  G+YFEPQY+  R  + +   +L+
Sbjct: 1   LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLT 60

Query: 220 IIDDTYDAYGTLEELSLFTEAVQ 242
           +IDDTYD YGTLEEL LFTEAV+
Sbjct: 61  VIDDTYDDYGTLEELELFTEAVE 83

Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational changes that close the active site to solvent, stabilizing reactive carbocation intermediates. Mechanistically and structurally distinct, class II terpene cyclases and cis-IPPS are not included in this CD. Taxonomic distribution includes bacteria, fungi and plants. Length = 284

>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase

 Score = 89.9 bits (223), Expect = 1e-20
 Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 26/209 (12%)

Query: 17  SNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRF-----KSSLINDVQGMLSLYEA 71
           S+  D+   ++ FRLLR  G ++S DVF+ F+   G F     +S+    V GM +LY A
Sbjct: 355 SHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEK-GGEFFCFAGQST--QAVTGMFNLYRA 411

Query: 72  AYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPK------LAEQINHALYRPLRKTLPRL 125
           + +   GE IL+ A  F++  L+     + +  K      L  ++  AL  P   +LPR+
Sbjct: 412 SQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYASLPRV 471

Query: 126 EARYFMSMINSTSDHLHNKTL-----------LNFAKLDFNILLELHKEELNELTKWWKD 174
           E R+++       D    KTL           L  AKLD+N    LH+ E +   KW+++
Sbjct: 472 ETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEE 531

Query: 175 LDFTTKLPYARDRLVELYFWDLGTYFEPQ 203
            +   +   +R  L+  YF    + FEP+
Sbjct: 532 CNL-GEFGVSRSELLLAYFLAAASIFEPE 559

Length = 800

>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase

 Score = 83.0 bits (205), Expect = 3e-18
 Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 25/234 (10%)

Query: 21  DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFK-SSLINDVQGMLSLYEAAYMAVRGE 79
           DL T +L FR+LR  G  +S D  ++F +D         + D   +L L+ A+ ++   E
Sbjct: 314 DLATCALAFRILRLNGYDVSSDPLKQFAEDHFSDSLGGYLKDTGAVLELFRASQISYPDE 373

Query: 80  HILDEAIAFTTTHLK-----SLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMI 134
            +L++  ++T+  L+          D +   + +++  AL  P    L RL  R   S+ 
Sbjct: 374 SLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERLANR--RSIE 431

Query: 135 NSTSD------------HLHNKTLLNFAKLDFNILLELHKEELNELTKWW--KDLDFTTK 180
           N   D            ++ N+  L  A  DFN    +H+EEL +L +W     LD   K
Sbjct: 432 NYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRLD---K 488

Query: 181 LPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEEL 234
           L +AR +L   YF    T F P+ +  R    +   + +++DD +D  G+ EEL
Sbjct: 489 LKFARQKLAYCYFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEEL 542

Length = 784

>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 14/50 (28%), Positives = 20/50 (40%)

Query: 193 FWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
           F  L    EP+ +  R  + +L+    + DD  D  GT   L     AV 
Sbjct: 1   FRPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVA 50

Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoterpenes, diterpenes, and sesquiterpenes, are formed from their respective linear isoprenoid diphosphates by class I terpene cyclases. The head-to-head (HH) IPPS catalyze the successive 1'-1 condensation of 2 farnesyl or 2 geranylgeranyl isoprenoid diphosphates. Cyclization of these 30- and 40-carbon linear forms are catalyzed by class II cyclases. Both the isoprenoid chain elongation reactions and the class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational changes that close the active site to solvent, stabilizing reactive carbocation intermediates. Generally, the enzymes in this family exhibit an all-trans reaction pathway, an exception, is the cis-trans terpene cyclase, trichodiene synthase. Mechanistically and structurally distinct, class II terpene cyclases and cis-IPPS are not included in this CD. Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	242
cd00684	542	Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C	100.0
PLN02279	784	ent-kaur-16-ene synthase	100.0
PLN02592	800	ent-copalyl diphosphate synthase	100.0
PF01397	183	Terpene_synth: Terpene synthase, N-terminal domain	100.0
PF03936	270	Terpene_synth_C: Terpene synthase family, metal bi	99.76
cd00868	284	Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp	99.49
cd00687	303	Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl	97.71

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1

Probab=100.00  E-value=3.2e-88  Score=658.86  Aligned_cols=240  Identities=54%  Similarity=0.938  Sum_probs=229.8

Q ss_pred             ChHHHHHHHHhhhcCC---CCCCChHHHHHHHHHHHhcCcccchhhhcccccccccccccchhcHHHHHhHHhhhccCCC
Q 045533            1 KEIEDAIQKLCPIYIH---SNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVR   77 (242)
Q Consensus         1 ~EI~~~L~~i~~~~~~---~~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~~~~~d~~glL~LYeAS~l~~~   77 (242)
                      +||+++|++||++|..   ....||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|
T Consensus        74 ~EI~~~L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~  153 (542)
T cd00684          74 DEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFP  153 (542)
T ss_pred             HHHHHHHHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCC
Confidence            5999999999998521   1357999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHHhHhhcC-CCCCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCCcccHHHHHHHHhhhHH
Q 045533           78 GEHILDEAIAFTTTHLKSLVAQD-HVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNI  156 (242)
Q Consensus        78 gE~iLdeA~~fs~~~L~~~~~~~-~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~n~~lLelAklDFn~  156 (242)
                      ||+|||||++||++||++++++| .++++|+++|++||++|||+++||+|||+||++|+  +++++|++||||||+|||+
T Consensus       154 gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~--~~~~~n~~lLelAkldfn~  231 (542)
T cd00684         154 GEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYE--QEDDHNETLLELAKLDFNI  231 (542)
T ss_pred             CcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhC--CCccccHHHHHHHHHHHHH
Confidence            99999999999999999999842 26789999999999999999999999999999999  9999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHhHHHhhcccccCCCCHHHHHH
Q 045533          157 LLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSL  236 (242)
Q Consensus       157 ~Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tiiDD~yD~ygt~eEl~~  236 (242)
                      ||++||+||++++|||+++||.++|||+|+|++|||||++|++|||++|.+|+++||++++++++||+||+|||+|||+.
T Consensus       232 ~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~  311 (542)
T cd00684         232 LQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELEL  311 (542)
T ss_pred             HhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHH
Confidence            99999999999999999999998889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhC
Q 045533          237 FTEAVQ  242 (242)
Q Consensus       237 ft~av~  242 (242)
                      ||+||+
T Consensus       312 ft~ai~  317 (542)
T cd00684         312 FTEAVE  317 (542)
T ss_pred             HHHHHH
Confidence            999985

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi

>PLN02279 ent-kaur-16-ene synthase

Probab=100.00  E-value=2.1e-85  Score=658.30  Aligned_cols=237  Identities=28%  Similarity=0.467  Sum_probs=222.8

Q ss_pred             ChHHHHHHHHhhhcCCC---CCCChHHHHHHHHHHHhcCcccchhhhcccccccccccccc---hhcHHHHHhHHhhhcc
Q 045533            1 KEIEDAIQKLCPIYIHS---NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL---INDVQGMLSLYEAAYM   74 (242)
Q Consensus         1 ~EI~~~L~~i~~~~~~~---~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~~~---~~d~~glL~LYeAS~l   74 (242)
                      +||+++|+++|++|..+   ...|+++|||+|||||||||+||||||++|+|+ + |++++   .+|++||||||||||+
T Consensus       291 ~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~-~-F~~~l~~~~~dv~gmL~LY~AS~l  368 (784)
T PLN02279        291 KEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAED-H-FSDSLGGYLKDTGAVLELFRASQI  368 (784)
T ss_pred             HHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCC-c-ccchhcccchhhHHHHHHHHHHhc
Confidence            49999999999975321   236999999999999999999999999999955 5 99887   5999999999999999


Q ss_pred             CCCCccHHHHHHHHHHHHHHhHhhcCC-----CCCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCCc--------
Q 045533           75 AVRGEHILDEAIAFTTTHLKSLVAQDH-----VTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHL--------  141 (242)
Q Consensus        75 ~~~gE~iLdeA~~fs~~~L~~~~~~~~-----~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~--------  141 (242)
                      ++|||+|||||+.||++||++.+++|.     ++++|+++|+|||++|||+++||+|||+||++|+  +++.        
T Consensus       369 ~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~Y~--~~~~~i~Kt~yr  446 (784)
T PLN02279        369 SYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERLANRRSIENYA--VDDTRILKTSYR  446 (784)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccHHHHHHHHHHhc--cccchhcccccc
Confidence            999999999999999999999887533     4678999999999999999999999999999999  8775        


Q ss_pred             ----ccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHhH
Q 045533          142 ----HNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYI  217 (242)
Q Consensus       142 ----~n~~lLelAklDFn~~Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l  217 (242)
                          +|+.||||||+|||+||++||+||++|+|||+++|| .+|||||||++|||||++|++||||||.+|++|||+++|
T Consensus       447 ~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~Yf~aaa~~fEPe~S~aRi~~aK~~~L  525 (784)
T PLN02279        447 CSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYCYFSAAATLFSPELSDARLSWAKNGVL  525 (784)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHH
Confidence                899999999999999999999999999999999999 699999999999999999999999999999999999999


Q ss_pred             HHhhcccccCCCCHHHHHHHHHhhC
Q 045533          218 LSIIDDTYDAYGTLEELSLFTEAVQ  242 (242)
Q Consensus       218 ~tiiDD~yD~ygt~eEl~~ft~av~  242 (242)
                      +|+|||+||+|||+|||++||+|||
T Consensus       526 ~tviDD~fD~yGt~eEL~~ft~aVe  550 (784)
T PLN02279        526 TTVVDDFFDVGGSEEELENLIQLVE  550 (784)
T ss_pred             HHHHHHHhhccCCHHHHHHHHHHHH
Confidence            9999999999999999999999986

>PLN02592 ent-copalyl diphosphate synthase

Probab=100.00  E-value=2.7e-83  Score=642.03  Aligned_cols=238  Identities=26%  Similarity=0.486  Sum_probs=221.2

Q ss_pred             ChHHHHHHHHhhhcCC-C-------CCCChHHHHHHHHHHHhcCcccchhhhcccccccccccccc---hhcHHHHHhHH
Q 045533            1 KEIEDAIQKLCPIYIH-S-------NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL---INDVQGMLSLY   69 (242)
Q Consensus         1 ~EI~~~L~~i~~~~~~-~-------~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~~~---~~d~~glL~LY   69 (242)
                      +||+++|+++|++|.. +       ...|+++|||+|||||||||+||||||++|++ +|+|++.+   .+|++||||||
T Consensus       331 ~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~-~g~F~~~~ge~~~Dv~glL~LY  409 (800)
T PLN02592        331 PEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEK-GGEFFCFAGQSTQAVTGMFNLY  409 (800)
T ss_pred             HHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcC-CCCccccccccccchHHHHHHH
Confidence            4999999999996421 1       13699999999999999999999999999996 89998654   89999999999


Q ss_pred             hhhccCCCCccHHHHHHHHHHHHHHhHhhcCC------CCCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCCcc-
Q 045533           70 EAAYMAVRGEHILDEAIAFTTTHLKSLVAQDH------VTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLH-  142 (242)
Q Consensus        70 eAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~------~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~-  142 (242)
                      |||||++|||.|||+|+.||+++|++.++.++      ++++|+++|+|||++|||+++||+|||+||++|+  +++++ 
T Consensus       410 eAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~Y~--~~~~~~  487 (800)
T PLN02592        410 RASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYASLPRVETRFYIEQYG--GEDDVW  487 (800)
T ss_pred             HHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhcCcchHHHHHHHHHhc--CCcccc
Confidence            99999999999999999999999999864323      3578999999999999999999999999999999  76654 


Q ss_pred             ------------cHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHH
Q 045533          143 ------------NKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKI  210 (242)
Q Consensus       143 ------------n~~lLelAklDFn~~Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~  210 (242)
                                  |+.||||||+|||+||++||+||++++|||+++|| .+|||||||++|||||++|++|||+||.+|++
T Consensus       488 i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L-~~L~faRdr~ve~Yfwa~~~~feP~~s~~Ri~  566 (800)
T PLN02592        488 IGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNL-GEFGVSRSELLLAYFLAAASIFEPERSHERLA  566 (800)
T ss_pred             hhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCC-CcCCcchhHHHHHHHHHHHhhcCccchHHHHH
Confidence                        99999999999999999999999999999999999 59999999999999999999999999999999


Q ss_pred             HHHHHhHHHhhcccccCCCCHHHHHHHHHhhC
Q 045533          211 MTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ  242 (242)
Q Consensus       211 ~aK~~~l~tiiDD~yD~ygt~eEl~~ft~av~  242 (242)
                      |||+++|+|+|||+||+|||+|||++||+||+
T Consensus       567 ~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~  598 (800)
T PLN02592        567 WAKTTVLVEAISSYFNKETSSKQRRAFLHEFG  598 (800)
T ss_pred             HHHHHHHHHhhcccccCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999984

>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family

Probab=100.00  E-value=2.5e-40  Score=283.04  Aligned_cols=114  Identities=51%  Similarity=0.795  Sum_probs=96.8

Q ss_pred             ChHHHHHHHHhhhcCCC--CCCChHHHHHHHHHHHhcCcccchhhhcccccccccccccchhcHHHHHhHHhhhccCCCC
Q 045533            1 KEIEDAIQKLCPIYIHS--NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRG   78 (242)
Q Consensus         1 ~EI~~~L~~i~~~~~~~--~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~~~~~d~~glL~LYeAS~l~~~g   78 (242)
                      +||+++|+++|+.+...  ...||++|||+|||||||||+||||||++|+|++|+|+.++++||+|||+|||||||++||
T Consensus        67 ~EI~~~L~~i~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~g  146 (183)
T PF01397_consen   67 DEIKEILDSIYRSWDEDNEEIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHG  146 (183)
T ss_dssp             HHHHHHHHHHHHTTTTTSHTSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT
T ss_pred             HHHHHHHHHHhhhccccccccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCC
Confidence            49999999999984211  2349999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHhHhhcCCCC-CchHHHHHHhc
Q 045533           79 EHILDEAIAFTTTHLKSLVAQDHVT-PKLAEQINHAL  114 (242)
Q Consensus        79 E~iLdeA~~fs~~~L~~~~~~~~~~-~~l~~~V~~aL  114 (242)
                      |+|||+|+.||++||+++++++..+ ++|+++|+|||
T Consensus       147 E~iLdeA~~Ft~~~L~~~~~~~~~~~~~L~~~V~~AL  183 (183)
T PF01397_consen  147 EDILDEARAFTTKHLKSLLSNLSIPDPHLAKEVKHAL  183 (183)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhC
Confidence            9999999999999999999854444 45999999997

It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....

>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family

Probab=99.76  E-value=6e-19  Score=155.10  Aligned_cols=96  Identities=33%  Similarity=0.446  Sum_probs=92.3

Q ss_pred             HHHHHHhhhHHHHHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHhHHHhhcccc
Q 045533          146 LLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTY  225 (242)
Q Consensus       146 lLelAklDFn~~Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tiiDD~y  225 (242)
                      +|+|||+|||.||++||+|++++++||+++|+..+.+.+|+|++.++||.++.++.|..+..|+.+||.++++.++||+|
T Consensus         1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~   80 (270)
T PF03936_consen    1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF   80 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence            68999999999999999999999999999999778888999999999999999999998889999999999999999999


Q ss_pred             cCCCCHHHHHHHHHhh
Q 045533          226 DAYGTLEELSLFTEAV  241 (242)
Q Consensus       226 D~ygt~eEl~~ft~av  241 (242)
                      |..|+.++++.|+++|
T Consensus        81 D~~~~~~~~~~l~~~~   96 (270)
T PF03936_consen   81 DDGGSAEELEALTDAV   96 (270)
T ss_dssp             HTTSHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHH
Confidence            9999999999998876

It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....

>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1

Probab=99.49  E-value=7.5e-14  Score=123.60  Aligned_cols=82  Identities=63%  Similarity=1.163  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHhHHHhhcccccCCCCHHHHHHHHH
Q 045533          160 LHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE  239 (242)
Q Consensus       160 ~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tiiDD~yD~ygt~eEl~~ft~  239 (242)
                      .||+|++++++||+++||....+++|.+..++|+|+++++|+|+.+..|+++||.++++.++||.||.+|+.+|+..+++
T Consensus         1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~   80 (284)
T cd00868           1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE   80 (284)
T ss_pred             CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence            49999999999999999976666999999999999999999999999999999999999999999999999999999988


Q ss_pred             hh
Q 045533          240 AV  241 (242)
Q Consensus       240 av  241 (242)
                      ++
T Consensus        81 ~~   82 (284)
T cd00868          81 AV   82 (284)
T ss_pred             HH
Confidence            76

Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch

>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1

Probab=97.71  E-value=8.7e-05  Score=66.96  Aligned_cols=73  Identities=22%  Similarity=0.216  Sum_probs=63.1

Q ss_pred             HHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHH-HHHhHHHhhcccccCC-CCHHHHHHHHHh
Q 045533          167 ELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMT-QLNYILSIIDDTYDAY-GTLEELSLFTEA  240 (242)
Q Consensus       167 ~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~a-K~~~l~tiiDD~yD~y-gt~eEl~~ft~a  240 (242)
                      +...|..+.|+. .=+.+|++.++++|+.++.++.|+.+..|+.++ +.++++.++||.||.. ++++++..+++.
T Consensus        18 ~~~~w~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~   92 (303)
T cd00687          18 EYLEWVLEEMLI-PSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTR   92 (303)
T ss_pred             HHHHHHHHcCCC-CcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHH
Confidence            466788888662 445799999999999999999999999999666 9999999999999998 499999888764

This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	242
3g4d_A	554	Crystal Structure Of (+)-Delta-Cadinene Synthase Fr		1e-67
3lz9_A	550	The Crystal Structure Of 5-Epi-Aristolochene Syntha		8e-62
5eau_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		9e-62
3m01_A	550	The Crystal Structure Of 5-Epi-Aristolochene Syntha		1e-61
1hxc_A	548	Crystal Structure Of Teas C440w Length = 548		1e-61
4di5_A	535	Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt		1e-61
5eas_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		2e-61
5eat_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		2e-61
1hx9_A	548	Crystal Structure Of Teas W273s Form 1 Length = 548		4e-60
1hxg_A	548	Crystal Structure Of Teas W273sC440W Length = 548		5e-60
3n0f_A	555	Crystal Structure Of Isoprene Synthase From Grey Po		1e-49
2ong_A	543	Crystal Structure Of Of Limonene Synthase With 2- F		7e-42
1n1b_A	549	Crystal Structure Of (+)-bornyl Diphosphate Synthas		6e-39
2j5c_A	569	Rational Conversion Of Substrate And Product Specif		1e-37
3sae_A	817	Structure Of A Three-Domain Sesquiterpene Synthase:		3e-33
3s9v_A	785	Abietadiene Synthase From Abies Grandis Length = 78		3e-28
3p5p_A	764	Crystal Structure Of Taxadiene Synthase From Pacifi		4e-28
3pya_A	727	Crystal Structure Of Ent-Copalyl Diphosphate Syntha		2e-14

>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554

Iteration: 1
 Score =  252 bits (644), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/245 (51%), Positives = 172/245 (70%), Gaps = 11/245 (4%)
Query: 1   KEIEDAIQKLCPIYIHSNSP--DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL 58
           KEIED ++    IY ++N    DL+T S+ FRLLR+ G  +SCDVF KFKD++G FKSS+
Sbjct: 91  KEIEDELEN---IYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSV 147
Query: 59  INDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQ-DHVTPKLAEQINHALYRP 117
            +DV+G+L LY+A+Y+ V GE ILDEAI+FTT HL   VA  DH    L+E+++HAL + 
Sbjct: 148 TSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDH---PLSEEVSHALKQS 204
Query: 118 LRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDF 177
           +R+ LPR+EAR+++S+      H  NK LL FAK+DFN+             +WWKDLDF
Sbjct: 205 IRRGLPRVEARHYLSVYQDIESH--NKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDF 262
Query: 178 TTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLF 237
             KLPYARDR+VE YFW  G YFEPQY+ GRK++T++  + SI+DDTYD+Y T EEL  +
Sbjct: 263 QRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPY 322
Query: 238 TEAVQ 242
           T A++
Sbjct: 323 TNAIE 327

>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550

Iteration: 1
 Score =  233 bits (593), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 118/243 (48%), Positives = 165/243 (67%), Gaps = 7/243 (2%)
Query: 1   KEIEDAIQKLCPIY-IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
           KEI+D + +   IY  +SN  DL T +L FRLLRQ G  IS ++F KF+D+ G+FK SL 
Sbjct: 87  KEIDDILDQ---IYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLA 143
Query: 60  NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
           +DV G+L+LYEA+++    + IL++A+AF+T HL+S  A  H+   L EQ+ HAL + L 
Sbjct: 144 SDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLH 201
Query: 120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTT 179
           K +PR+E R+F+S I    +   N  LL FAKLDFN+            ++WWKDLDF T
Sbjct: 202 KGVPRVETRFFISSIYD-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 260
Query: 180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
            LPYARDR+VE YFW LG YFEPQY+  R ++ +   ++SI+DDT+DAYGT++EL  +T+
Sbjct: 261 TLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 320
Query: 240 AVQ 242
           A+Q
Sbjct: 321 AIQ 323

>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548

Iteration: 1
 Score =  233 bits (593), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 118/243 (48%), Positives = 165/243 (67%), Gaps = 7/243 (2%)
Query: 1   KEIEDAIQKLCPIY-IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
           KEI+D + +   IY  +SN  DL T +L FRLLRQ G  IS ++F KF+D+ G+FK SL 
Sbjct: 85  KEIDDILDQ---IYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLA 141
Query: 60  NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
           +DV G+L+LYEA+++    + IL++A+AF+T HL+S  A  H+   L EQ+ HAL + L 
Sbjct: 142 SDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLH 199
Query: 120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTT 179
           K +PR+E R+F+S I    +   N  LL FAKLDFN+            ++WWKDLDF T
Sbjct: 200 KGVPRVETRFFISSIYD-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 258
Query: 180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
            LPYARDR+VE YFW LG YFEPQY+  R ++ +   ++SI+DDT+DAYGT++EL  +T+
Sbjct: 259 TLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 318
Query: 240 AVQ 242
           A+Q
Sbjct: 319 AIQ 321

>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550

Iteration: 1
 Score =  233 bits (593), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/243 (48%), Positives = 165/243 (67%), Gaps = 7/243 (2%)
Query: 1   KEIEDAIQKLCPIY-IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
           KEI+D + +   IY  +SN  DL T +L FRLLRQ G  IS ++F KF+D+ G+FK SL 
Sbjct: 87  KEIDDILDQ---IYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLA 143
Query: 60  NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
           +DV G+L+LYEA+++    + IL++A+AF+T HL+S  A  H+   L EQ+ HAL + L 
Sbjct: 144 SDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLH 201
Query: 120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTT 179
           K +PR+E R+F+S I    +   N  LL FAKLDFN+            ++WWKDLDF T
Sbjct: 202 KGVPRVETRFFISSIYD-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 260
Query: 180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
            LPYARDR+VE YFW LG YFEPQY+  R ++ +   ++SI+DDT+DAYGT++EL  +T+
Sbjct: 261 TLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 320
Query: 240 AVQ 242
           A+Q
Sbjct: 321 AIQ 323

>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548

Iteration: 1
 Score =  232 bits (592), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/243 (48%), Positives = 165/243 (67%), Gaps = 7/243 (2%)
Query: 1   KEIEDAIQKLCPIY-IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
           KEI+D + +   IY  +SN  DL T +L FRLLRQ G  IS ++F KF+D+ G+FK SL 
Sbjct: 85  KEIDDILDQ---IYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLA 141
Query: 60  NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
           +DV G+L+LYEA+++    + IL++A+AF+T HL+S  A  H+   L EQ+ HAL + L 
Sbjct: 142 SDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLH 199
Query: 120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTT 179
           K +PR+E R+F+S I    +   N  LL FAKLDFN+            ++WWKDLDF T
Sbjct: 200 KGVPRVETRFFISSIYD-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 258
Query: 180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
            LPYARDR+VE YFW LG YFEPQY+  R ++ +   ++SI+DDT+DAYGT++EL  +T+
Sbjct: 259 TLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 318
Query: 240 AVQ 242
           A+Q
Sbjct: 319 AIQ 321

>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535

Iteration: 1
 Score =  232 bits (592), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/243 (48%), Positives = 165/243 (67%), Gaps = 7/243 (2%)
Query: 1   KEIEDAIQKLCPIY-IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
           KEI+D + +   IY  +SN  DL T +L FRLLRQ G  IS ++F KF+D+ G+FK SL 
Sbjct: 72  KEIDDILDQ---IYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLA 128
Query: 60  NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
           +DV G+L+LYEA+++    + IL++A+AF+T HL+S  A  H+   L EQ+ HAL + L 
Sbjct: 129 SDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLH 186
Query: 120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTT 179
           K +PR+E R+F+S I    +   N  LL FAKLDFN+            ++WWKDLDF T
Sbjct: 187 KGVPRVETRFFISSIYD-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 245
Query: 180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
            LPYARDR+VE YFW LG YFEPQY+  R ++ +   ++SI+DDT+DAYGT++EL  +T+
Sbjct: 246 TLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 305
Query: 240 AVQ 242
           A+Q
Sbjct: 306 AIQ 308

>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548

Iteration: 1
 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/227 (49%), Positives = 156/227 (68%), Gaps = 3/227 (1%)
Query: 16  HSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMA 75
           +SN  DL T +L FRLLRQ G  IS ++F KF+D+ G+FK SL +DV G+L+LYEA+++ 
Sbjct: 98  NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVR 157
Query: 76  VRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMIN 135
              + IL++A+AF+T HL+S  A  H+   L EQ+ HAL + L K +PR+E R+F+S I 
Sbjct: 158 THADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIY 215
Query: 136 STSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWD 195
              +   N  LL FAKLDFN+            ++WWKDLDF T LPYARDR+VE YFW 
Sbjct: 216 D-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA 274
Query: 196 LGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
           LG YFEPQY+  R ++ +   ++SI+DDT+DAYGT++EL  +T+A+Q
Sbjct: 275 LGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQ 321

>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548

Iteration: 1
 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/227 (49%), Positives = 156/227 (68%), Gaps = 3/227 (1%)
Query: 16  HSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMA 75
           +SN  DL T +L FRLLRQ G  IS ++F KF+D+ G+FK SL +DV G+L+LYEA+++ 
Sbjct: 98  NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVR 157
Query: 76  VRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMIN 135
              + IL++A+AF+T HL+S  A  H+   L EQ+ HAL + L K +PR+E R+F+S I 
Sbjct: 158 THADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIY 215
Query: 136 STSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWD 195
              +   N  LL FAKLDFN+            ++WWKDLDF T LPYARDR+VE YFW 
Sbjct: 216 D-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA 274
Query: 196 LGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
           LG YFEPQY+  R ++ +   ++SI+DDT+DAYGT++EL  +T+A+Q
Sbjct: 275 LGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQ 321

>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548

Iteration: 1
 Score =  227 bits (579), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 117/243 (48%), Positives = 164/243 (67%), Gaps = 7/243 (2%)
Query: 1   KEIEDAIQKLCPIY-IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
           KEI+D + +   IY  +SN  DL T +L FRLLRQ G  IS ++F KF+D+ G+FK SL 
Sbjct: 85  KEIDDILDQ---IYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLA 141
Query: 60  NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
           +DV G+L+LYEA+++    + IL++A+AF+T HL+S  A  H+   L EQ+ HAL + L 
Sbjct: 142 SDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLH 199
Query: 120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTT 179
           K +PR+E R+F+S I    +   N  LL FAKLDFN+            ++WWKDLDF T
Sbjct: 200 KGVPRVETRFFISSIYD-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 258
Query: 180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
            LPYARDR+VE YF  LG YFEPQY+  R ++ +   ++SI+DDT+DAYGT++EL  +T+
Sbjct: 259 TLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 318
Query: 240 AVQ 242
           A+Q
Sbjct: 319 AIQ 321

>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548

Iteration: 1
 Score =  227 bits (578), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 117/243 (48%), Positives = 164/243 (67%), Gaps = 7/243 (2%)
Query: 1   KEIEDAIQKLCPIY-IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLI 59
           KEI+D + +   IY  +SN  DL T +L FRLLRQ G  IS ++F KF+D+ G+FK SL 
Sbjct: 85  KEIDDILDQ---IYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLA 141
Query: 60  NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
           +DV G+L+LYEA+++    + IL++A+AF+T HL+S  A  H+   L EQ+ HAL + L 
Sbjct: 142 SDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQCLH 199
Query: 120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTT 179
           K +PR+E R+F+S I    +   N  LL FAKLDFN+            ++WWKDLDF T
Sbjct: 200 KGVPRVETRFFISSIYD-KEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVT 258
Query: 180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
            LPYARDR+VE YF  LG YFEPQY+  R ++ +   ++SI+DDT+DAYGT++EL  +T+
Sbjct: 259 TLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD 318
Query: 240 AVQ 242
           A+Q
Sbjct: 319 AIQ 321

>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555

Iteration: 1
 Score =  192 bits (489), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 96/221 (43%), Positives = 139/221 (62%), Gaps = 3/221 (1%)
Query: 22  LHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEHI 81
           LH  +L FRLLRQ G ++S + F  FKD  G F  +L  D + +LSLYEA+++A+ GE+I
Sbjct: 108 LHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENI 167
Query: 82  LDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHL 141
           LDEA  F  +HLK L +++ +  +LAEQ+NHAL  PL +   RLEA + +       D  
Sbjct: 168 LDEARVFAISHLKEL-SEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDA- 225
Query: 142 HNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFE 201
            N+ LL  A LD+N+            ++WW+ +   TKL +ARDRL+E ++W +G  FE
Sbjct: 226 -NQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFE 284
Query: 202 PQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
           PQY+  R  + ++   ++IIDD YD YGTL+EL LFT+AV+
Sbjct: 285 PQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVE 325

>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543

Iteration: 1
 Score =  167 bits (422), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 129/222 (58%), Gaps = 2/222 (0%)
Query: 21  DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEH 80
           DL++ SL FRLLR+ G +++ +VF+ FK++EG FK SL +D +G+L LYEA+++   GE 
Sbjct: 97  DLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGET 156
Query: 81  ILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDH 140
            L+ A  F T  L+  V +  V   L  +I ++L  PL   + R  A  ++       D 
Sbjct: 157 TLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDM 216
Query: 141 LHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTYF 200
             N  +L  A LD NI             +WW++  F  KLP+ARDRLVE YFW+ G   
Sbjct: 217 --NPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIE 274
Query: 201 EPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
             Q+A  R +M ++N ++++IDD YD YGTLEEL  FT+ ++
Sbjct: 275 PRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIR 316

>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549

Iteration: 1
 Score =  157 bits (397), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 127/225 (56%), Gaps = 5/225 (2%)
Query: 21  DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEG-RFKSSLINDVQGMLSLYEAAYMAVRGE 79
           DL+  +L FRLLRQ G  IS DVF  FK+++G  FK+SL  D +GML LYEA+++  +GE
Sbjct: 100 DLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGE 159
Query: 80  HILDEAIAFTTTHLKSLV--AQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINST 137
             L+ A  F T  L+  +    + +   L   I H+L  PL   +  +EAR+F+      
Sbjct: 160 DTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARR 219
Query: 138 SDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLG 197
            D   N  +   AKL+FNI            ++WW  L F  KLP+ RDRLVE +FW +G
Sbjct: 220 PDM--NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVG 277
Query: 198 TYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
            +   Q+ + RK+   +  + ++IDD YD YGTL+EL LFT+  +
Sbjct: 278 MFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFK 322

>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 124/223 (55%), Gaps = 4/223 (1%)
Query: 21  DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGR-FKSSLINDVQGMLSLYEAAYMAVRGE 79
           DL++ +L FRLLRQ    +S +VF+ FK+ +G  FK SL++D +G+L LYEA++++ +GE
Sbjct: 124 DLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGE 183
Query: 80  HILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSD 139
             L  A  F T  L+  V  D     L   I  AL  P    +    AR F+       D
Sbjct: 184 ETLRLARDFATKFLQKRVLVDK-DINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPD 242
Query: 140 HLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLPYARDRLVELYFWDLGTY 199
              N T+L  AKLDFN+            ++WW       +LP+ RDR+VE Y+W  G  
Sbjct: 243 M--NPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVV 300
Query: 200 FEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
              Q+ + R ++T++N +++ IDD +D YGTLEEL LFT A+Q
Sbjct: 301 ERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQ 343

>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817

Iteration: 1
 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/244 (34%), Positives = 130/244 (53%), Gaps = 26/244 (10%)
Query: 21  DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSS---LINDVQGMLSLYEAAYMAVR 77
           DL T +L FRLLR     +S  +F+ FKD  G+F  S      DV  ML+LY A+ +A  
Sbjct: 347 DLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFP 406
Query: 78  GEHILDEAIAFTTTHLKSLVAQDHVTP------KLAEQINHALYRPLRKTLPRLEARYFM 131
           GE+ILDEA +F T +L+  + +   +        L+++I +AL      ++PR+EA+ + 
Sbjct: 407 GENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYC 466
Query: 132 SMINS----------TSDHLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKL 181
            +                +++N+  L   KLDFNI            T W++D    + L
Sbjct: 467 QVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRD----SGL 522
Query: 182 P---YARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFT 238
           P   +AR+R +E YF      +EPQYA  R + T++  + +++DD YD YGTL+EL LFT
Sbjct: 523 PLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFT 582
Query: 239 EAVQ 242
           EAV+
Sbjct: 583 EAVR 586

>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 126/244 (51%), Gaps = 24/244 (9%)
Query: 20  PDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQG---MLSLYEAAYMAV 76
           PD+   ++  R+LR  G  +S DV + F+D+ G F   L    +G   ML++   ++++ 
Sbjct: 318 PDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSF 377
Query: 77  RGEHILDEAIAFTTTHLKSLVAQDHVTPKLA------EQINHALYRPLRKTLPRLEARYF 130
            GE I++EA   T  +L++ +       K A       ++ +AL  P  K++PRLEAR +
Sbjct: 378 PGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSY 437
Query: 131 MSMINSTSD------------HLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFT 178
           +   N   D            ++ N+  L  AKLDFN              +WWK   FT
Sbjct: 438 IE--NYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFT 495
Query: 179 TKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFT 238
             L + R+R+ E+YF      FEP+++  R++ T+ +    I+DD YDA+G+L++L LFT
Sbjct: 496 -DLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFT 554
Query: 239 EAVQ 242
           E+V+
Sbjct: 555 ESVK 558

>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764

Iteration: 1
 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 121/240 (50%), Gaps = 23/240 (9%)
Query: 20  PDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN---DVQGMLSLYEAAYMAV 76
           PDL+T +L  R LR  G  +S DV   FKD+ GRF SS      +++ +++L+ A+ +A 
Sbjct: 294 PDLNTTALGLRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAF 353
Query: 77  RGEHILDEAIAFTTTHLK-SLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMIN 135
             E  +D+A  F   +L+ +L  +     KL ++I + +  P   ++PRLEAR   S I+
Sbjct: 354 PDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEAR---SYID 410
Query: 136 STSDH-------------LHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLDFTTKLP 182
           S  D+             L N   L  AKLDFNI            T+WWK+      + 
Sbjct: 411 SYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADIN 469
Query: 183 YARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
           + R R+ E+YF      FEP+Y+  R   T++  +  + DD  D + TL+EL  FTE V+
Sbjct: 470 FTRHRVAEVYF--SSATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVK 527

>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 22/225 (9%)
Query: 17  SNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIND---VQGMLSLYEAAY 73
           S+  D+   ++ FRLLRQ G ++S DVF+ F + EG F   +      V GM +LY A+ 
Sbjct: 290 SHVQDIDDTAMAFRLLRQHGYQVSADVFKNF-EKEGEFFCFVGQSNQAVTGMFNLYRASQ 348
Query: 74  MAVRGEHILDEAIAFTTTHL------KSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEA 127
           +A   E IL  A  F+  +L      + L+ +  +   L  +I  AL  P   +LPR+E 
Sbjct: 349 LAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVET 408
Query: 128 RYFMSMINSTSD-----------HLHNKTLLNFAKLDFNIXXXXXXXXXXXXTKWWKDLD 176
           R+++      +D           +++N   L  AK D+N              KW+++ +
Sbjct: 409 RFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEE-N 467
Query: 177 FTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSII 221
             ++    R  L+E Y+    T FE + +  R +  + + ++  I
Sbjct: 468 RLSEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAI 512

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	242
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	9e-74
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	6e-73
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	3e-72
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	4e-71
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	6e-71
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	1e-66
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	2e-59
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	4e-59
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	1e-57
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	1e-55
1ps1_A	337	Pentalenene synthase; antibiotic biosynthesis, ses	2e-07
3bny_A	320	Aristolochene synthase; sesquiterpene cyclase, iso	3e-05
3kb9_A	382	EPI-isozizaene synthase; terpenoid cyclase, alpha-	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569

 Score =  233 bits (595), Expect = 9e-74
 Identities = 89/243 (36%), Positives = 135/243 (55%), Gaps = 4/243 (1%)

Query: 1   KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGR-FKSSLI 59
           +EI + +          +  DL++ +L FRLLRQ    +S +VF+ FK+ +G  FK SL+
Sbjct: 104 REIVEILNSKYYTNNEIDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLV 163

Query: 60  NDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLR 119
           +D +G+L LYEA++++ +GE  L  A  F T  L+  V        L   I  AL  P  
Sbjct: 164 DDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRV-LVDKDINLLSSIERALELPTH 222

Query: 120 KTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTT 179
             +    AR F+       D   N T+L  AKLDFN++    ++EL E ++WW       
Sbjct: 223 WRVQMPNARSFIDAYKRRPDM--NPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVH 280

Query: 180 KLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE 239
           +LP+ RDR+VE Y+W  G     Q+ + R ++T++N +++ IDD +D YGTLEEL LFT 
Sbjct: 281 ELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTT 340

Query: 240 AVQ 242
           A+Q
Sbjct: 341 AIQ 343

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554

 Score =  230 bits (588), Expect = 6e-73
 Identities = 127/241 (52%), Positives = 178/241 (73%), Gaps = 6/241 (2%)

Query: 4   EDAIQKLCPIYIHSNSP--DLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIND 61
           ++   +L  IY ++N    DL+T S+ FRLLR+ G  +SCDVF KFKD++G FKSS+ +D
Sbjct: 91  KEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSD 150

Query: 62  VQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKT 121
           V+G+L LY+A+Y+ V GE ILDEAI+FTT HL   VA   +   L+E+++HAL + +R+ 
Sbjct: 151 VRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVA--SLDHPLSEEVSHALKQSIRRG 208

Query: 122 LPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKL 181
           LPR+EAR+++S+      H  NK LL FAK+DFN+L  LH++EL+E+ +WWKDLDF  KL
Sbjct: 209 LPRVEARHYLSVYQDIESH--NKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKL 266

Query: 182 PYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAV 241
           PYARDR+VE YFW  G YFEPQY+ GRK++T++  + SI+DDTYD+Y T EEL  +T A+
Sbjct: 267 PYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAI 326

Query: 242 Q 242
           +
Sbjct: 327 E 327

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550

 Score =  229 bits (584), Expect = 3e-72
 Identities = 121/242 (50%), Positives = 171/242 (70%), Gaps = 5/242 (2%)

Query: 1   KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN 60
           KEI+D + ++     +SN  DL T +L FRLLRQ G  IS ++F KF+D+ G+FK SL +
Sbjct: 87  KEIDDILDQIY--NQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLAS 144

Query: 61  DVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRK 120
           DV G+L+LYEA+++    + IL++A+AF+T HL+S     H+   L EQ+ HAL + L K
Sbjct: 145 DVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA--PHLKSPLREQVTHALEQCLHK 202

Query: 121 TLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTK 180
            +PR+E R+F+S I        N  LL FAKLDFN+L  LHK+EL ++++WWKDLDF T 
Sbjct: 203 GVPRVETRFFISSIYDKEQS-KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTT 261

Query: 181 LPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEA 240
           LPYARDR+VE YFW LG YFEPQY+  R ++ +   ++SI+DDT+DAYGT++EL  +T+A
Sbjct: 262 LPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDA 321

Query: 241 VQ 242
           +Q
Sbjct: 322 IQ 323

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543

 Score =  225 bits (575), Expect = 4e-71
 Identities = 92/248 (37%), Positives = 140/248 (56%), Gaps = 8/248 (3%)

Query: 1   KEIEDAIQKLC------PIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRF 54
            E ++ +  +                DL++ SL FRLLR+ G +++ +VF+ FK++EG F
Sbjct: 71  NEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEF 130

Query: 55  KSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHAL 114
           K SL +D +G+L LYEA+++   GE  L+ A  F T  L+  V +  V   L  +I ++L
Sbjct: 131 KESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSL 190

Query: 115 YRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKD 174
             PL   + R  A  ++       D   N  +L  A LD NI+    +EEL E  +WW++
Sbjct: 191 DIPLHWRIKRPNAPVWIEWYRKRPD--MNPVVLELAILDLNIVQAQFQEELKESFRWWRN 248

Query: 175 LDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEEL 234
             F  KLP+ARDRLVE YFW+ G     Q+A  R +M ++N ++++IDD YD YGTLEEL
Sbjct: 249 TGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEEL 308

Query: 235 SLFTEAVQ 242
             FT+ ++
Sbjct: 309 EQFTDLIR 316

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555

 Score =  225 bits (575), Expect = 6e-71
 Identities = 100/244 (40%), Positives = 148/244 (60%), Gaps = 8/244 (3%)

Query: 4   EDAIQKLCPIYIHSN-----SPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL 58
            D  + L                LH  +L FRLLRQ G ++S + F  FKD  G F  +L
Sbjct: 85  SDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENL 144

Query: 59  INDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPL 118
             D + +LSLYEA+++A+ GE+ILDEA  F  +HLK L  ++ +  +LAEQ+NHAL  PL
Sbjct: 145 KEDTKAILSLYEASFLALEGENILDEARVFAISHLKELS-EEKIGKELAEQVNHALELPL 203

Query: 119 RKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFT 178
            +   RLEA + +       D   N+ LL  A LD+N++  +++ +L E ++WW+ +   
Sbjct: 204 HRRTQRLEAVWSIEAYRKKEDA--NQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLA 261

Query: 179 TKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFT 238
           TKL +ARDRL+E ++W +G  FEPQY+  R  + ++   ++IIDD YD YGTL+EL LFT
Sbjct: 262 TKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFT 321

Query: 239 EAVQ 242
           +AV+
Sbjct: 322 DAVE 325

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549

 Score =  214 bits (545), Expect = 1e-66
 Identities = 94/250 (37%), Positives = 143/250 (57%), Gaps = 10/250 (4%)

Query: 1   KEIEDAIQKLCPIY-----IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGR-F 54
            EI++ +  +   +           DL+  +L FRLLRQ G  IS DVF  FK+++G  F
Sbjct: 75  DEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDF 134

Query: 55  KSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQ--DHVTPKLAEQINH 112
           K+SL  D +GML LYEA+++  +GE  L+ A  F T  L+  + +  + +   L   I H
Sbjct: 135 KASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRH 194

Query: 113 ALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLELHKEELNELTKWW 172
           +L  PL   +  +EAR+F+       D   N  +   AKL+FNI+   H++EL +L++WW
Sbjct: 195 SLDLPLHWRIQSVEARWFIDAYARRPDM--NPLIFELAKLNFNIIQATHQQELKDLSRWW 252

Query: 173 KDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLE 232
             L F  KLP+ RDRLVE +FW +G +   Q+ + RK+   +  + ++IDD YD YGTL+
Sbjct: 253 SRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLD 312

Query: 233 ELSLFTEAVQ 242
           EL LFT+  +
Sbjct: 313 ELELFTDTFK 322

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727

 Score =  198 bits (504), Expect = 2e-59
 Identities = 61/269 (22%), Positives = 115/269 (42%), Gaps = 30/269 (11%)

Query: 1   KEIEDAIQKLCPIY--------IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEG 52
           +EI++ +  +   +          S+  D+   ++ FRLLRQ G ++S DVF+ F+ +  
Sbjct: 266 EEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFEKEGE 325

Query: 53  R--FKSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVT------P 104
              F       V GM +LY A+ +A   E IL  A  F+  +L     ++ +        
Sbjct: 326 FFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMK 385

Query: 105 KLAEQINHALYRPLRKTLPRLEARYFMSMINSTSD-----------HLHNKTLLNFAKLD 153
            L  +I  AL  P   +LPR+E R+++      +D           +++N   L  AK D
Sbjct: 386 DLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQD 445

Query: 154 FNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQ 213
           +N     H+ E +   KW+++   + +    R  L+E Y+    T FE + +  R +  +
Sbjct: 446 YNNCQAQHQLEWDIFQKWYEENRLS-EWGVRRSELLECYYLAAATIFESERSHERMVWAK 504

Query: 214 LNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
            + ++  I  ++           F++   
Sbjct: 505 SSVLVKAISSSFGESSD--SRRSFSDQFH 531

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785

 Score =  198 bits (504), Expect = 4e-59
 Identities = 79/269 (29%), Positives = 140/269 (52%), Gaps = 28/269 (10%)

Query: 1   KEIEDAIQKLCPIY--------IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEG 52
           +EI++A+  +   +          +  PD+   ++  R+LR  G  +S DV + F+D+ G
Sbjct: 291 EEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENG 350

Query: 53  RFKSSL---INDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQD------HVT 103
            F   L      V  ML++   ++++  GE I++EA   T  +L++ +            
Sbjct: 351 EFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFK 410

Query: 104 PKLAEQINHALYRPLRKTLPRLEARYFMSM----------INSTSDHLHNKTLLNFAKLD 153
             +  ++ +AL  P  K++PRLEAR ++                  ++ N+  L  AKLD
Sbjct: 411 KNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLD 470

Query: 154 FNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQ 213
           FN +  +H+ EL +L +WWK   FT  L + R+R+ E+YF      FEP+++  R++ T+
Sbjct: 471 FNKVQSIHQTELQDLRRWWKSSGFT-DLNFTRERVTEIYFSPASFIFEPEFSKCREVYTK 529

Query: 214 LNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
            +    I+DD YDA+G+L++L LFTE+V+
Sbjct: 530 TSNFTVILDDLYDAHGSLDDLKLFTESVK 558

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817

 Score =  195 bits (495), Expect = 1e-57
 Identities = 90/269 (33%), Positives = 144/269 (53%), Gaps = 28/269 (10%)

Query: 1   KEIEDAIQKLCPIY--------IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEG 52
           KEI++A+  +   +          +   DL T +L FRLLR     +S  +F+ FKD  G
Sbjct: 319 KEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDANG 378

Query: 53  RFKSS---LINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPK---- 105
           +F  S      DV  ML+LY A+ +A  GE+ILDEA +F T +L+  + +   +      
Sbjct: 379 KFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNK 438

Query: 106 --LAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHL----------HNKTLLNFAKLD 153
             L+++I +AL      ++PR+EA+ +  +       +          +N+  L   KLD
Sbjct: 439 QNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLD 498

Query: 154 FNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQ 213
           FNI+  +H+EE+  +T W++D        +AR+R +E YF      +EPQYA  R + T+
Sbjct: 499 FNIIQSIHQEEMKNVTSWFRDSGLP-LFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTK 557

Query: 214 LNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
           +  + +++DD YD YGTL+EL LFTEAV+
Sbjct: 558 VACLQTVLDDMYDTYGTLDELKLFTEAVR 586

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764

 Score =  188 bits (479), Expect = 1e-55
 Identities = 84/264 (31%), Positives = 133/264 (50%), Gaps = 25/264 (9%)

Query: 1   KEIEDAIQKLCPIY--------IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEG 52
           +EI+ A+  +   +          S  PDL+T +L  R LR  G  +S DV   FKD+ G
Sbjct: 267 QEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKDENG 326

Query: 53  RFKSSLIN---DVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQD-HVTPKLAE 108
           RF SS      +++ +++L+ A+ +A   E  +D+A  F   +L+  +A       KL +
Sbjct: 327 RFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFK 386

Query: 109 QINHALYRPLRKTLPRLEARYFMSMINSTSDHL----------HNKTLLNFAKLDFNILL 158
           +I + +  P   ++PRLEAR ++   +                 N   L  AKLDFNI+ 
Sbjct: 387 EIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQ 446

Query: 159 ELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYIL 218
            LH+EEL  LT+WWK+      + + R R+ E+YF      FEP+Y+  R   T++  + 
Sbjct: 447 SLHQEELKLLTRWWKESGMA-DINFTRHRVAEVYFS--SATFEPEYSATRIAFTKIGCLQ 503

Query: 219 SIIDDTYDAYGTLEELSLFTEAVQ 242
            + DD  D + TL+EL  FTE V+
Sbjct: 504 VLFDDMADIFATLDELKSFTEGVK 527

>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 3/78 (3%)

Query: 161 HKEELN-ELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGR-KIMTQLNYIL 218
                  E   W + L        A +R +   + DL + F P        +   L    
Sbjct: 18  DHARAEAEQLAWPRSLGLIRS-DAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWF 76

Query: 219 SIIDDTYDAYGTLEELSL 236
            + DD +D          
Sbjct: 77  FLFDDLFDGPRGENPEDT 94

>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 161 HKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGR-KIMTQLNYILS 219
             EE+++    +    +      AR + V   F  +   + P+    R     +L  +L 
Sbjct: 28  LVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLF 87

Query: 220 IIDDTYDAYGTLEELSLFTEAV 241
           +IDD  + Y + EE S + E +
Sbjct: 88  LIDDLLE-YMSFEEGSAYNEKL 108

>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382

 Score = 39.4 bits (91), Expect = 7e-04
 Identities = 8/81 (9%), Positives = 20/81 (24%), Gaps = 3/81 (3%)

Query: 161 HKEELN-ELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGR-KIMTQLNYIL 218
           +  +L      W  +           +    L + DL   +         + +   +   
Sbjct: 58  YWPKLQETTRTWLLEKRLMPA-DKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWF 116

Query: 219 SIIDDTYDAYGTLEELSLFTE 239
            + DD +D          +  
Sbjct: 117 FVWDDRHDRDIVHGRAGAWRR 137

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 9e-04
 Identities = 42/240 (17%), Positives = 82/240 (34%), Gaps = 50/240 (20%)

Query: 1   KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDD---EGRFKSS 57
           + + + +QKL     +   P+  +     R      IK+     +           +++ 
Sbjct: 196 ETVLEMLQKLL----YQIDPNWTS-----RSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 58  LI--NDVQGMLSLYEAAYMAV--------RGEHILDEAIAFTTTHLKSLVAQDHVTPKLA 107
           L+   +VQ   +        +        R + + D   A TTTH+        +TP   
Sbjct: 247 LLVLLNVQ---NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 108 EQINHALYRPLR-KTLPRLEAR----YFMSMINSTSDHLHNKTLLNFAKLDFNILLELHK 162
           + +    Y   R + LPR E        +S+I + S      T  N+  ++ + L  + +
Sbjct: 304 KSL-LLKYLDCRPQDLPR-EVLTTNPRRLSII-AESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 163 EELNELT-----KWWKDLD-F--TTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQL 214
             LN L      K +  L  F  +  +P     L+ L  W      +        ++ +L
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTI---LLSLI-WFDVIKSDVM-----VVVNKL 411

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	242
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	100.0
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	100.0
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	100.0
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	100.0
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	100.0
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	100.0
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	100.0
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	100.0
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	100.0
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	100.0
1ps1_A	337	Pentalenene synthase; antibiotic biosynthesis, ses	99.64
3bny_A	320	Aristolochene synthase; sesquiterpene cyclase, iso	99.62
1di1_A	300	Aristolochene synthase; sesquiterpene cyclase, iso	99.6
3kb9_A	382	EPI-isozizaene synthase; terpenoid cyclase, alpha-	99.13

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*

Probab=100.00  E-value=5e-93  Score=691.62  Aligned_cols=237  Identities=54%  Similarity=0.944  Sum_probs=228.3

Q ss_pred             ChHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHhcCcccchhhhcccccccccccccchhcHHHHHhHHhhhccCCCCcc
Q 045533            1 KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEH   80 (242)
Q Consensus         1 ~EI~~~L~~i~~~~~~~~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~~~~~d~~glL~LYeAS~l~~~gE~   80 (242)
                      +||+++|++||+.. ..+..||++|||+|||||||||+||||||++|+|++|+|++++.+|++|||||||||||++|||+
T Consensus        91 ~EI~~~L~~i~~~~-~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~  169 (554)
T 3g4d_A           91 KEIEDELENIYHNN-NDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGED  169 (554)
T ss_dssp             HHHHHHHHHHHHSC-CCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHHHHHHHHhcc-CCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcH
Confidence            49999999999862 22337999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCCCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCCcccHHHHHHHHhhhHHHHHh
Q 045533           81 ILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNILLEL  160 (242)
Q Consensus        81 iLdeA~~fs~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~n~~lLelAklDFn~~Q~~  160 (242)
                      |||+|+.||++||+++++  .++++|+++|+|||++|||+++||+|||+||++|+  +++++|++||||||+|||+||++
T Consensus       170 iLdeA~~fs~~~L~~~~~--~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~--~~~~~n~~lLelAkldFn~~Q~~  245 (554)
T 3g4d_A          170 ILDEAISFTTHHLSLAVA--SLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQ--DIESHNKALLEFAKIDFNMLQFL  245 (554)
T ss_dssp             HHHHHHHHHHHHHHHHST--TCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHH--SSTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh--ccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhC--cCccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999886  67788999999999999999999999999999999  99999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHhHHHhhcccccCCCCHHHHHHHHHh
Q 045533          161 HKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEA  240 (242)
Q Consensus       161 hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tiiDD~yD~ygt~eEl~~ft~a  240 (242)
                      ||+||++++|||+++||+++|||||||+||||||++|++|||+||.+|++|||+++|+|+|||+||+|||+|||++||+|
T Consensus       246 hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~a  325 (554)
T 3g4d_A          246 HRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNA  325 (554)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hC
Q 045533          241 VQ  242 (242)
Q Consensus       241 v~  242 (242)
                      |+
T Consensus       326 i~  327 (554)
T 3g4d_A          326 IE  327 (554)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*

Probab=100.00  E-value=4.4e-93  Score=691.46  Aligned_cols=236  Identities=51%  Similarity=0.916  Sum_probs=228.6

Q ss_pred             ChHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHhcCcccchhhhcccccccccccccchhcHHHHHhHHhhhccCCCCcc
Q 045533            1 KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEH   80 (242)
Q Consensus         1 ~EI~~~L~~i~~~~~~~~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~~~~~d~~glL~LYeAS~l~~~gE~   80 (242)
                      +||+++|++||+.|  ....||++|||+|||||||||+||||||++|+|++|+|++++.+|++|||||||||||++|||+
T Consensus        87 ~EI~~~L~~i~~~~--~~~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~gE~  164 (550)
T 3m00_A           87 KEIDDILDQIYNQN--SNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADD  164 (550)
T ss_dssp             HHHHHHHHHHHHHC--CCCSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCG
T ss_pred             HHHHHHHHHHHHhc--ccCCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHhcCCCCcH
Confidence            49999999999984  2357999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCCCchHHHHHHhcCCCccCChhhhHHHHhHH-hhhccCCCcccHHHHHHHHhhhHHHHH
Q 045533           81 ILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMS-MINSTSDHLHNKTLLNFAKLDFNILLE  159 (242)
Q Consensus        81 iLdeA~~fs~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~-~Y~~~~~~~~n~~lLelAklDFn~~Q~  159 (242)
                      |||+|+.||++||+++++  +++++|+++|+|||++|||+++||+|||+||+ .|+  +++++|++||||||+|||+||+
T Consensus       165 iLdeA~~fs~~~L~~~~~--~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~--~~~~~n~~lLelAkldFn~~Q~  240 (550)
T 3m00_A          165 ILEDALAFSTIHLESAAP--HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYD--KEQSKNNVLLRFAKLDFNLLQM  240 (550)
T ss_dssp             GGTTHHHHHHHHHHHHGG--GCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGG--GCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh--ccCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhc--ccccccHHHHHHHHHHHHHHHH
Confidence            999999999999999886  56788999999999999999999999999999 999  9999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHhHHHhhcccccCCCCHHHHHHHHH
Q 045533          160 LHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTE  239 (242)
Q Consensus       160 ~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tiiDD~yD~ygt~eEl~~ft~  239 (242)
                      +||+||++++|||+++||+++|||||||+||||||++|++|||+||.+|+++||+++|+|+|||+||+|||+|||++||+
T Consensus       241 ~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~  320 (550)
T 3m00_A          241 LHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD  320 (550)
T ss_dssp             HHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHH
Confidence            99999999999999999988999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhC
Q 045533          240 AVQ  242 (242)
Q Consensus       240 av~  242 (242)
                      ||+
T Consensus       321 ai~  323 (550)
T 3m00_A          321 AIQ  323 (550)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            985

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*

Probab=100.00  E-value=4.9e-93  Score=692.06  Aligned_cols=238  Identities=42%  Similarity=0.749  Sum_probs=226.9

Q ss_pred             ChHHHHHHHHhhhc---CCCCCCChHHHHHHHHHHHhcCcccchhhhcccccccccccccchhcHHHHHhHHhhhccCCC
Q 045533            1 KEIEDAIQKLCPIY---IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVR   77 (242)
Q Consensus         1 ~EI~~~L~~i~~~~---~~~~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~~~~~d~~glL~LYeAS~l~~~   77 (242)
                      +||+++|++||+..   .+ ...||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|
T Consensus        85 ~EI~~~L~~i~~~~~~~~~-~~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~  163 (555)
T 3n0f_A           85 SDIRRALDRFVSSGGFDGV-TKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALE  163 (555)
T ss_dssp             HHHHHHHHHHHHTCHHHHH-TTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccC
Confidence            49999999999741   02 347999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHHhHhhcCCCCCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCCcccHHHHHHHHhhhHHH
Q 045533           78 GEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIL  157 (242)
Q Consensus        78 gE~iLdeA~~fs~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~n~~lLelAklDFn~~  157 (242)
                      ||+|||+|+.||++||++++.+ .++++|+++|+|||++|||+++||+|||+||++|+  +++++|++||||||||||+|
T Consensus       164 gE~iLdeA~~Fs~~~L~~~~~~-~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~--~~~~~n~~lLelAKlDFN~~  240 (555)
T 3n0f_A          164 GENILDEARVFAISHLKELSEE-KIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYR--KKEDANQVLLELAILDYNMI  240 (555)
T ss_dssp             TCHHHHHHHHHHHHHHHTCCHH-HHCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHT--TCTTCCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHhcCCcccCchHHHHHHHHHHhc--ccccccHHHHHHHHHhHHHH
Confidence            9999999999999999987652 35678999999999999999999999999999999  99999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHhHHHhhcccccCCCCHHHHHHH
Q 045533          158 LELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLF  237 (242)
Q Consensus       158 Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tiiDD~yD~ygt~eEl~~f  237 (242)
                      |++||+||++++|||+++||+++|||||||+||||||++|++|||+||.+|++|||+++|+|+|||+||+|||+|||++|
T Consensus       241 Q~~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~f  320 (555)
T 3n0f_A          241 QSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELF  320 (555)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence            99999999999999999999889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhC
Q 045533          238 TEAVQ  242 (242)
Q Consensus       238 t~av~  242 (242)
                      |+||+
T Consensus       321 t~ai~  325 (555)
T 3n0f_A          321 TDAVE  325 (555)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99985

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*

Probab=100.00  E-value=2.7e-90  Score=672.25  Aligned_cols=239  Identities=38%  Similarity=0.644  Sum_probs=228.7

Q ss_pred             ChHHHHHHHHhhhcCC-----CC-CCChHHHHHHHHHHHhcCcccchhhhcccccccccccccchhcHHHHHhHHhhhcc
Q 045533            1 KEIEDAIQKLCPIYIH-----SN-SPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYM   74 (242)
Q Consensus         1 ~EI~~~L~~i~~~~~~-----~~-~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~~~~~d~~glL~LYeAS~l   74 (242)
                      +||+++|++||+.+..     .. ..||++|||+|||||||||+||||||++|||++|+|++++.+||+|||||||||||
T Consensus        71 ~EI~~~L~~i~~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l  150 (543)
T 2ong_A           71 NEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFL  150 (543)
T ss_dssp             HHHHHHHHHHHHTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHc
Confidence            4999999999987421     11 46999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccHHHHHHHHHHHHHHhHhhcCCC-CCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCCcccHHHHHHHHhh
Q 045533           75 AVRGEHILDEAIAFTTTHLKSLVAQDHV-TPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLD  153 (242)
Q Consensus        75 ~~~gE~iLdeA~~fs~~~L~~~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~n~~lLelAklD  153 (242)
                      ++|||+|||||+.||++||++++.++ + +++|+++|+|||++|||+++||+|||+||++|+  +++++|++||||||||
T Consensus       151 ~~~gE~iL~eA~~Ft~~~L~~~~~~~-~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~--~~~~~n~~lLelAkld  227 (543)
T 2ong_A          151 LTEGETTLESAREFATKFLEEKVNEG-GVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYR--KRPDMNPVVLELAILD  227 (543)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHHHSS-CSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHH--TCSSCCHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhc--cCccccHHHHHHHHHh
Confidence            99999999999999999999998742 5 788999999999999999999999999999999  9999999999999999


Q ss_pred             hHHHHHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHhHHHhhcccccCCCCHHH
Q 045533          154 FNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEE  233 (242)
Q Consensus       154 Fn~~Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tiiDD~yD~ygt~eE  233 (242)
                      ||+||++||+||++++|||+++||.++|||||||++|||||++|++|||++|.+|+++||++++++++||+||+|||+||
T Consensus       228 Fn~~Q~~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eE  307 (543)
T 2ong_A          228 LNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEE  307 (543)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHH
Confidence            99999999999999999999999988899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhC
Q 045533          234 LSLFTEAVQ  242 (242)
Q Consensus       234 l~~ft~av~  242 (242)
                      |++||+||+
T Consensus       308 l~~ft~ai~  316 (543)
T 2ong_A          308 LEQFTDLIR  316 (543)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999984

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}

Probab=100.00  E-value=1.3e-89  Score=670.45  Aligned_cols=237  Identities=37%  Similarity=0.638  Sum_probs=224.0

Q ss_pred             ChHHHHHHHHh-hhcCCCCCCChHHHHHHHHHHHhcCcccchhhhcccccccc-cccccchhcHHHHHhHHhhhccCCCC
Q 045533            1 KEIEDAIQKLC-PIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEG-RFKSSLINDVQGMLSLYEAAYMAVRG   78 (242)
Q Consensus         1 ~EI~~~L~~i~-~~~~~~~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G-~F~~~~~~d~~glL~LYeAS~l~~~g   78 (242)
                      +||+++|++|| +.+ .....||++|||+|||||||||+||||||++|||++| +|++++.+||+|||||||||||++||
T Consensus       104 ~EI~~~L~~i~~~~~-~~~~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~g  182 (569)
T 2j5c_A          104 REIVEILNSKYYTNN-EIDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQG  182 (569)
T ss_dssp             HHHHHHHHHHTTSSC-CSCTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHHhcc-CcccCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCCC
Confidence            49999999999 763 1135699999999999999999999999999999999 99999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHhHhhcCCC-CCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCCcccHHHHHHHHhhhHHH
Q 045533           79 EHILDEAIAFTTTHLKSLVAQDHV-TPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKLDFNIL  157 (242)
Q Consensus        79 E~iLdeA~~fs~~~L~~~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~n~~lLelAklDFn~~  157 (242)
                      |+|||||+.||++||++++.  .+ +++|+++|+|||++|||+++||+|||+||++|+  +++++|++||||||||||+|
T Consensus       183 E~iLdeA~~Ft~~~L~~~~~--~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~--~~~~~n~~lLelAkldFn~~  258 (569)
T 2j5c_A          183 EETLRLARDFATKFLQKRVL--VDKDINLLSSIERALELPTHWRVQMPNARSFIDAYK--RRPDMNPTVLELAKLDFNMV  258 (569)
T ss_dssp             CHHHHHHHHHHHHTTSSCC------CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHT--TCTTCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHh--hcCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhc--cCccccHHHHHHHHHhHHHH
Confidence            99999999999999999876  45 788999999999999999999999999999999  99999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHhHHHhhcccccCCCCHHHHHHH
Q 045533          158 LELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLF  237 (242)
Q Consensus       158 Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tiiDD~yD~ygt~eEl~~f  237 (242)
                      |++||+||++++|||+++||.++|||||||++|||||++|++|||++|.+|+++||++++++++||+||+|||+|||++|
T Consensus       259 Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~f  338 (569)
T 2j5c_A          259 QAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLF  338 (569)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            99999999999999999999888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhC
Q 045533          238 TEAVQ  242 (242)
Q Consensus       238 t~av~  242 (242)
                      |+||+
T Consensus       339 t~ai~  343 (569)
T 2j5c_A          339 TTAIQ  343 (569)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99984

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*

Probab=100.00  E-value=3.9e-89  Score=664.81  Aligned_cols=240  Identities=39%  Similarity=0.687  Sum_probs=226.6

Q ss_pred             ChHHHHHHHHhhhcC---CC--CCCChHHHHHHHHHHHhcCcccchhhhcccccccc-cccccchhcHHHHHhHHhhhcc
Q 045533            1 KEIEDAIQKLCPIYI---HS--NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEG-RFKSSLINDVQGMLSLYEAAYM   74 (242)
Q Consensus         1 ~EI~~~L~~i~~~~~---~~--~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G-~F~~~~~~d~~glL~LYeAS~l   74 (242)
                      +||+++|++||+.+.   ..  ...||++|||+|||||||||+||||||++|||++| +|++++.+|++|||||||||||
T Consensus        75 ~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l  154 (549)
T 1n1b_A           75 DEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFL  154 (549)
T ss_dssp             HHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhhccccccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhc
Confidence            499999999998631   11  14699999999999999999999999999999999 9999999999999999999999


Q ss_pred             CCCCccHHHHHHHHHHHHHHhHhhcC-CC-CCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCCcccHHHHHHHHh
Q 045533           75 AVRGEHILDEAIAFTTTHLKSLVAQD-HV-TPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHLHNKTLLNFAKL  152 (242)
Q Consensus        75 ~~~gE~iLdeA~~fs~~~L~~~~~~~-~~-~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~n~~lLelAkl  152 (242)
                      ++|||+|||||+.||++||++++.++ .+ +++|+++|+|||++|||+++||+|||+||++|+  +++++|++|||||||
T Consensus       155 ~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~--~~~~~n~~lLelAkl  232 (549)
T 1n1b_A          155 LRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYA--RRPDMNPLIFELAKL  232 (549)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHH--HCTTCCHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhc--ccccccHHHHHHHHH
Confidence            99999999999999999999998732 14 788999999999999999999999999999999  999999999999999


Q ss_pred             hhHHHHHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHhHHHhhcccccCCCCHH
Q 045533          153 DFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGTLE  232 (242)
Q Consensus       153 DFn~~Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tiiDD~yD~ygt~e  232 (242)
                      |||+||++||+||++++|||+++||.++|||||||++|||||++|++|||++|.+|+++||++++++++||+||+|||+|
T Consensus       233 dFn~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~e  312 (549)
T 1n1b_A          233 NFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLD  312 (549)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhC
Q 045533          233 ELSLFTEAVQ  242 (242)
Q Consensus       233 El~~ft~av~  242 (242)
                      ||+.||+||+
T Consensus       313 El~~ft~ai~  322 (549)
T 1n1b_A          313 ELELFTDTFK  322 (549)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999984

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=100.00  E-value=5.5e-87  Score=670.77  Aligned_cols=239  Identities=33%  Similarity=0.625  Sum_probs=223.8

Q ss_pred             ChHHHHHHHHhhhcCC-----C---CCCChHHHHHHHHHHHhcCcccchhhhcccccccccccccc---hhcHHHHHhHH
Q 045533            1 KEIEDAIQKLCPIYIH-----S---NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL---INDVQGMLSLY   69 (242)
Q Consensus         1 ~EI~~~L~~i~~~~~~-----~---~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~~~---~~d~~glL~LY   69 (242)
                      +||+++|+++|+.+..     +   ...||++|||+|||||||||+||||||++|+|++|+|++++   .+|++||||||
T Consensus       291 ~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~e~~~dv~g~L~LY  370 (785)
T 3s9v_A          291 EEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVN  370 (785)
T ss_dssp             HHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCSSTTCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCCeeeccccccccccccHHHH
Confidence            4999999999987421     1   13699999999999999999999999999999999999855   69999999999


Q ss_pred             hhhccCCCCccHHHHHHHHHHHHHHhHhhcC------CCCCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCCc--
Q 045533           70 EAAYMAVRGEHILDEAIAFTTTHLKSLVAQD------HVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHL--  141 (242)
Q Consensus        70 eAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~------~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~--  141 (242)
                      |||||++|||+|||||+.||++||++++.++      .++++|+++|+|||++|||+++||+|||+||++|+  +++.  
T Consensus       371 eAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~~~l~RleaR~yI~~Y~--~~~~~i  448 (785)
T 3s9v_A          371 RCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYG--PDDVWL  448 (785)
T ss_dssp             HHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCC--TTCCEE
T ss_pred             hHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccccCchHHHHHHHHHHhc--ccchhh
Confidence            9999999999999999999999999987643      25678999999999999999999999999999999  7765  


Q ss_pred             ----------ccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHH
Q 045533          142 ----------HNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIM  211 (242)
Q Consensus       142 ----------~n~~lLelAklDFn~~Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~  211 (242)
                                +|++||||||||||+||++||+||++++|||+++|+ .+|||||||+||||||++|++||||||.+|++|
T Consensus       449 ~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~  527 (785)
T 3s9v_A          449 GKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEIYFSPASFIFEPEFSKCREVY  527 (785)
T ss_dssp             SSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSSSCCCHHHHHHHHHHHSCSGGGHHHHHHH
T ss_pred             hcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCccHHHHHHHHHHHHHHhcCCccchHHHHHH
Confidence                      499999999999999999999999999999999999 699999999999999999999999999999999


Q ss_pred             HHHHhHHHhhcccccCCCCHHHHHHHHHhhC
Q 045533          212 TQLNYILSIIDDTYDAYGTLEELSLFTEAVQ  242 (242)
Q Consensus       212 aK~~~l~tiiDD~yD~ygt~eEl~~ft~av~  242 (242)
                      ||+++|+|+|||+||+|||+|||++||+||+
T Consensus       528 aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~  558 (785)
T 3s9v_A          528 TKTSNFTVILDDLYDAHGSLDDLKLFTESVK  558 (785)
T ss_dssp             HHHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999985

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=100.00  E-value=1.2e-86  Score=670.60  Aligned_cols=239  Identities=38%  Similarity=0.666  Sum_probs=221.0

Q ss_pred             ChHHHHHHHHhhhcCC-----C---CCCChHHHHHHHHHHHhcCcccchhhhcccccccccccccc---hhcHHHHHhHH
Q 045533            1 KEIEDAIQKLCPIYIH-----S---NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSL---INDVQGMLSLY   69 (242)
Q Consensus         1 ~EI~~~L~~i~~~~~~-----~---~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~~~---~~d~~glL~LY   69 (242)
                      +||+++|+++|+.+..     +   ...||++|||+|||||||||+||||||++|+|++|+|++++   .+|++||||||
T Consensus       319 ~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~~~~~dv~gmL~LY  398 (817)
T 3sdr_A          319 KEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLY  398 (817)
T ss_dssp             HHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCC--CBCCCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHhhcCCCceechhhhchhhHHHHHHH
Confidence            4999999999987421     1   13599999999999999999999999999999999999854   69999999999


Q ss_pred             hhhccCCCCccHHHHHHHHHHHHHHhHhhcCC-C-----CCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCCc--
Q 045533           70 EAAYMAVRGEHILDEAIAFTTTHLKSLVAQDH-V-----TPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHL--  141 (242)
Q Consensus        70 eAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~-~-----~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~--  141 (242)
                      |||||++|||+|||||+.||++||++++.++. +     +++|+++|+|||++|||+++||+|||+||++|+  +++.  
T Consensus       399 eAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~--~~~~~i  476 (817)
T 3sdr_A          399 RASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYR--PDYARI  476 (817)
T ss_dssp             HHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCSTTCCHHHHHHHHHTTCC--TTCCEE
T ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchhccChHHHHHHHHHHhC--ccchhh
Confidence            99999999999999999999999999876432 2     367999999999999999999999999999999  7765  


Q ss_pred             ----------ccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHH
Q 045533          142 ----------HNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIM  211 (242)
Q Consensus       142 ----------~n~~lLelAklDFn~~Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~  211 (242)
                                +|++||||||||||+||++||+||++++|||+++|+ .+|||||||+||||||++|++||||||.+|++|
T Consensus       477 ~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~  555 (817)
T 3sdr_A          477 AKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPLEFYFLVAAGTYEPQYAKCRFLF  555 (817)
T ss_dssp             SSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTTSCCCHHHHHHHHHTTSCCGGGHHHHHHH
T ss_pred             hhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCC-CcCccHHHHHHHHHHHHHHhccCccchHHHHHH
Confidence                      499999999999999999999999999999999999 699999999999999999999999999999999


Q ss_pred             HHHHhHHHhhcccccCCCCHHHHHHHHHhhC
Q 045533          212 TQLNYILSIIDDTYDAYGTLEELSLFTEAVQ  242 (242)
Q Consensus       212 aK~~~l~tiiDD~yD~ygt~eEl~~ft~av~  242 (242)
                      ||+++|+|+|||+||+|||+|||++||+||+
T Consensus       556 aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~  586 (817)
T 3sdr_A          556 TKVACLQTVLDDMYDTYGTLDELKLFTEAVR  586 (817)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999985

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=100.00  E-value=6.8e-86  Score=661.29  Aligned_cols=237  Identities=35%  Similarity=0.620  Sum_probs=222.1

Q ss_pred             ChHHHHHHHHhhhcCC-----C-C--CCChHHHHHHHHHHHhcCcccchhhhcccccccccccc---cchhcHHHHHhHH
Q 045533            1 KEIEDAIQKLCPIYIH-----S-N--SPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKS---SLINDVQGMLSLY   69 (242)
Q Consensus         1 ~EI~~~L~~i~~~~~~-----~-~--~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~---~~~~d~~glL~LY   69 (242)
                      +||+++|+++|+.+..     + .  ..||++|||+|||||||||+||||||++|+|++|+|++   ++.+|++||||||
T Consensus       267 ~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~~g~F~~~~~~~~~dv~gmL~LY  346 (764)
T 3p5p_A          267 QEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLF  346 (764)
T ss_dssp             HHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCSCTTCSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhhcCCCCccccccccccccHHHHHHH
Confidence            4999999999987421     1 1  35999999999999999999999999999999999986   4689999999999


Q ss_pred             hhhccCCCCccHHHHHHHHHHHHHHhHhhc-CCCCCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCCc-------
Q 045533           70 EAAYMAVRGEHILDEAIAFTTTHLKSLVAQ-DHVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHL-------  141 (242)
Q Consensus        70 eAS~l~~~gE~iLdeA~~fs~~~L~~~~~~-~~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~-------  141 (242)
                      |||||++|||+|||||+.||++||++++.+ +.++++|+++|+|||++|||+++||+|||+||++|+  +++.       
T Consensus       347 eAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~--~~~~~i~Kt~y  424 (764)
T 3p5p_A          347 RASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYD--DNYVWQRKTLY  424 (764)
T ss_dssp             HHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHHHHHHHHHHHCC--TTCCEESSSEE
T ss_pred             HHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchHHHHHHHHHHhc--ccchhhhcccc
Confidence            999999999999999999999999998764 246788999999999999999999999999999999  7765       


Q ss_pred             -----ccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHh
Q 045533          142 -----HNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNY  216 (242)
Q Consensus       142 -----~n~~lLelAklDFn~~Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~  216 (242)
                           +|++||||||||||+||++||+||++|+|||+++|+ .+|||||||+||||||++|  |||+||.+|++|||+++
T Consensus       425 r~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~faRdr~ve~Yfw~~~--feP~~s~~R~~~aK~~~  501 (764)
T 3p5p_A          425 RMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYFSSAT--FEPEYSATRIAFTKIGC  501 (764)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTCCHHHHHHHHHHTCC--CCGGGHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCC-CcCccHHHHHHHHHHHHHh--CCccchHHHHHHHHHHH
Confidence                 499999999999999999999999999999999999 6999999999999999999  99999999999999999


Q ss_pred             HHHhhcccccCCCCHHHHHHHHHhhC
Q 045533          217 ILSIIDDTYDAYGTLEELSLFTEAVQ  242 (242)
Q Consensus       217 l~tiiDD~yD~ygt~eEl~~ft~av~  242 (242)
                      |+|+|||+||+|||+|||++||+||+
T Consensus       502 l~tviDD~yD~ygT~eEl~~ft~ai~  527 (764)
T 3p5p_A          502 LQVLFDDMADIFATLDELKSFTEGVK  527 (764)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccCCCHHHHHHHHHHHH
Confidence            99999999999999999999999985

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=100.00  E-value=1.2e-84  Score=648.05  Aligned_cols=236  Identities=26%  Similarity=0.484  Sum_probs=218.9

Q ss_pred             ChHHHHHHHHhhhcC-C----C---CCCChHHHHHHHHHHHhcCcccchhhhcccccccccccc---cchhcHHHHHhHH
Q 045533            1 KEIEDAIQKLCPIYI-H----S---NSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKS---SLINDVQGMLSLY   69 (242)
Q Consensus         1 ~EI~~~L~~i~~~~~-~----~---~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~---~~~~d~~glL~LY   69 (242)
                      +||+++|+++|+.|. .    .   ...||++|||+|||||||||+||||||++|+ ++|+|++   +..+|++|||+||
T Consensus       266 ~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tAL~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLY  344 (727)
T 3pya_A          266 EEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLY  344 (727)
T ss_dssp             HHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHHHHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHHHHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHH
Confidence            499999999998642 1    1   1359999999999999999999999999999 8899984   3468999999999


Q ss_pred             hhhccCCCCccHHHHHHHHHHHHHHhHhhcCCC------CCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCCc--
Q 045533           70 EAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHV------TPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDHL--  141 (242)
Q Consensus        70 eAS~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~------~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~--  141 (242)
                      |||||++|||+|||||+.||++||++.+.++.+      +++|+++|+|||++|||+++||+|||+||++|+  ++++  
T Consensus       345 eAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~--~~~~~~  422 (727)
T 3pya_A          345 RASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYG--GENDVW  422 (727)
T ss_dssp             HHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCCCSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCC--GGGCEE
T ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcccccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhc--cCcchh
Confidence            999999999999999999999999998765443      478999999999999999999999999999999  6554  


Q ss_pred             -----------ccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHH
Q 045533          142 -----------HNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKI  210 (242)
Q Consensus       142 -----------~n~~lLelAklDFn~~Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~  210 (242)
                                 +|++||||||+|||+||++||+||++|+||||++|| .+|||||||+||||||++|++||||||.+|++
T Consensus       423 i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~  501 (727)
T 3pya_A          423 IGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMV  501 (727)
T ss_dssp             ESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHH
T ss_pred             hhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHhhhheeHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHH
Confidence                       699999999999999999999999999999999999 56999999999999999999999999999999


Q ss_pred             HHHHHhHHHhhcccccCCCCHHHHHHHHHhhC
Q 045533          211 MTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ  242 (242)
Q Consensus       211 ~aK~~~l~tiiDD~yD~ygt~eEl~~ft~av~  242 (242)
                      |||+++|+|+|||+||+||  |||++||+||+
T Consensus       502 ~aK~~~l~tviDD~yD~yG--eEl~~ft~av~  531 (727)
T 3pya_A          502 WAKSSVLVKAISSSFGESS--DSRRSFSDQFH  531 (727)
T ss_dssp             HHHHHHHHHHHHHHHCSSH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcch--HHHHHHHHHHH
Confidence            9999999999999999999  99999999983

>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A

Probab=99.64  E-value=6.1e-17  Score=146.37  Aligned_cols=83  Identities=18%  Similarity=0.205  Sum_probs=74.9

Q ss_pred             HHhhHHHHHH-HHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHH-HHHHHHhHHHhhcccccCC--CCHHH
Q 045533          158 LELHKEELNE-LTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRK-IMTQLNYILSIIDDTYDAY--GTLEE  233 (242)
Q Consensus       158 Q~~hq~EL~~-lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~-~~aK~~~l~tiiDD~yD~y--gt~eE  233 (242)
                      .+.|.+|+++ +++||+++|+.+ .||+|+|+++||||.++++++|+++.+|+ ++||.+++++++||+||.|  ||++|
T Consensus        15 ~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee   93 (337)
T 1ps1_A           15 QSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPED   93 (337)
T ss_dssp             CCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHH
Confidence            3456677754 456999999964 69999999999999999999999999999 9999999999999999999  69999


Q ss_pred             HHHHHHhh
Q 045533          234 LSLFTEAV  241 (242)
Q Consensus       234 l~~ft~av  241 (242)
                      ++.||+++
T Consensus        94 ~~~~~~~l  101 (337)
T 1ps1_A           94 TKQLTDQV  101 (337)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999987

>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*

Probab=99.62  E-value=2.5e-16  Score=141.34  Aligned_cols=82  Identities=21%  Similarity=0.190  Sum_probs=73.4

Q ss_pred             HHhhHHHHHHH-HHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHH-HHHHHHhHHHhhcccccCCCCHHHHH
Q 045533          158 LELHKEELNEL-TKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRK-IMTQLNYILSIIDDTYDAYGTLEELS  235 (242)
Q Consensus       158 Q~~hq~EL~~l-srWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~-~~aK~~~l~tiiDD~yD~ygt~eEl~  235 (242)
                      .+.|.+|+++. .+||+++|+..+ ||+|+|+++||||.++++++|+++.+|+ ++||.+++++++||+||. ||++|++
T Consensus        25 ~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~~  102 (320)
T 3bny_A           25 CHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEGS  102 (320)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhHH
Confidence            34567777655 456699999755 9999999999999999999999999999 899999999999999999 8999999


Q ss_pred             HHHHhh
Q 045533          236 LFTEAV  241 (242)
Q Consensus       236 ~ft~av  241 (242)
                      .||+++
T Consensus       103 ~~~~~l  108 (320)
T 3bny_A          103 AYNEKL  108 (320)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999986

>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A

Probab=99.60  E-value=3.2e-16  Score=139.10  Aligned_cols=80  Identities=13%  Similarity=0.120  Sum_probs=72.4

Q ss_pred             hhHHHHHHH-HHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHH-HHHHHHhHHHhhcccccCCCCHHHHHHH
Q 045533          160 LHKEELNEL-TKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRK-IMTQLNYILSIIDDTYDAYGTLEELSLF  237 (242)
Q Consensus       160 ~hq~EL~~l-srWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~-~~aK~~~l~tiiDD~yD~ygt~eEl~~f  237 (242)
                      -|.+|+++. .+||+++|+. ++||+|+|++++|||.++++++|+++.+|+ ++||.+++++++||+||. ||++|++.|
T Consensus        13 P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~   90 (300)
T 1di1_A           13 PRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAY   90 (300)
T ss_dssp             TTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHH
Confidence            466777664 5566999996 679999999999999999999999999999 999999999999999999 899999999


Q ss_pred             HHhh
Q 045533          238 TEAV  241 (242)
Q Consensus       238 t~av  241 (242)
                      |+++
T Consensus        91 ~~~~   94 (300)
T 1di1_A           91 NNRL   94 (300)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9986

>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*

Probab=99.13  E-value=2.3e-11  Score=112.81  Aligned_cols=73  Identities=10%  Similarity=0.020  Sum_probs=68.0

Q ss_pred             HHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHH-HHHHHHhHHHhhcccccC--CC-CHHHHHHHHHhh
Q 045533          168 LTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRK-IMTQLNYILSIIDDTYDA--YG-TLEELSLFTEAV  241 (242)
Q Consensus       168 lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~-~~aK~~~l~tiiDD~yD~--yg-t~eEl~~ft~av  241 (242)
                      +.+||+++|+. .-+++|+|+++||||.+++++.|+++..|+ ++||.+++++++||+||.  +| +++|++.|++++
T Consensus        66 ~~~W~~~~gl~-~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l  142 (382)
T 3kb9_A           66 TRTWLLEKRLM-PADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLL  142 (382)
T ss_dssp             HHHHHHHTTSS-CHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCC-CCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHH
Confidence            67899999995 448999999999999999999999999999 999999999999999997  66 999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	242
d5easa2	328	a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase	7e-47
d1n1ba2	328	a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth	4e-45
d5easa1	197	a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase	9e-44
d1n1ba1	207	a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha	2e-43
d1ps1a_	311	a.128.1.4 (A:) Pentalenene synthase {Streptomyces	1e-11
d1di1a_	300	a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen	8e-06

>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  156 bits (395), Expect = 7e-47
 Identities = 60/100 (60%), Positives = 80/100 (80%)

Query: 143 NKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEP 202
           N  LL FAKLDFN+L  LHK+EL ++++WWKDLDF T LPYARDR+VE YFW LG YFEP
Sbjct: 2   NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEP 61

Query: 203 QYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
           QY+  R ++ +   ++SI+DDT+DAYGT++EL  +T+A+Q
Sbjct: 62  QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQ 101

>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  151 bits (383), Expect = 4e-45
 Identities = 44/100 (44%), Positives = 66/100 (66%)

Query: 143 NKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEP 202
           N  +   AKL+FNI+   H++EL +L++WW  L F  KLP+ RDRLVE +FW +G +   
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 61

Query: 203 QYAFGRKIMTQLNYILSIIDDTYDAYGTLEELSLFTEAVQ 242
           Q+ + RK+   +  + ++IDD YD YGTL+EL LFT+  +
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFK 101

>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  144 bits (364), Expect = 9e-44
 Identities = 60/134 (44%), Positives = 91/134 (67%), Gaps = 4/134 (2%)

Query: 1   KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLIN 60
           KEI++ + ++     +SN  DL T +L FRLLRQ G  IS ++F KF+D+ G+FK SL +
Sbjct: 62  KEIDEILDQIY--NQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLAS 119

Query: 61  DVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRK 120
           DV G+L+LYEA+++    + IL++A+AF+T HL+S     H+   L EQ+ HAL + L K
Sbjct: 120 DVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA--PHLKSPLREQVTHALEQCLHK 177

Query: 121 TLPRLEARYFMSMI 134
            +PR+E R+F+S I
Sbjct: 178 GVPRVETRFFISSI 191

>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  143 bits (363), Expect = 2e-43
 Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 8/140 (5%)

Query: 1   KEIEDAIQKL-----CPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEG-RF 54
            EI++ +  +     C         DL+  +L FRLLRQ G  IS DVF  FK+++G  F
Sbjct: 61  DEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDF 120

Query: 55  KSSLINDVQGMLSLYEAAYMAVRGEHILDEAIAFTTTHLKSLVAQ--DHVTPKLAEQINH 112
           K+SL  D +GML LYEA+++  +GE  L+ A  F T  L+  + +  + +   L   I H
Sbjct: 121 KASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRH 180

Query: 113 ALYRPLRKTLPRLEARYFMS 132
           +L  PL   +  +EAR+F+ 
Sbjct: 181 SLDLPLHWRIQSVEARWFID 200

>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Aristolochene/pentalenene synthase
domain: Pentalenene synthase
species: Streptomyces sp., UC5319 [TaxId: 1931]

 Score = 61.4 bits (148), Expect = 1e-11
 Identities = 11/77 (14%), Positives = 19/77 (24%), Gaps = 1/77 (1%)

Query: 161 HKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGR-KIMTQLNYILS 219
                      W       +   A +R +   + DL + F P        +   L     
Sbjct: 16  DHARAEAEQLAWPRSLGLIRSDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFF 75

Query: 220 IIDDTYDAYGTLEELSL 236
           + DD +D          
Sbjct: 76  LFDDLFDGPRGENPEDT 92

>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Aristolochene/pentalenene synthase
domain: Aristolochene synthase
species: Fungus (Penicillium roqueforti) [TaxId: 5082]

 Score = 43.6 bits (102), Expect = 8e-06
 Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 159 ELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGR-KIMTQLNYI 217
           E+  E      + WK          A    ++  F ++   + P     R     +L  +
Sbjct: 17  EVQDEVDGYFLENWKFPS-----FKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTV 71

Query: 218 LSIIDDTYDAYGTLEELSLFTEAVQ 242
           L +IDD  + + +  +   +   + 
Sbjct: 72  LFLIDDVLE-HMSFADGEAYNNRLI 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	242
d1n1ba1	207	(+)-bornyl diphosphate synthase {Garden sage (Salv	100.0
d5easa1	197	5-Epi-aristolochene synthase {Tobacco (Nicotiana t	100.0
d5easa2	328	5-Epi-aristolochene synthase {Tobacco (Nicotiana t	100.0
d1n1ba2	328	(+)-bornyl diphosphate synthase {Garden sage (Salv	100.0
d1ps1a_	311	Pentalenene synthase {Streptomyces sp., UC5319 [Ta	98.23
d1di1a_	300	Aristolochene synthase {Fungus (Penicillium roquef	95.76

>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=2.3e-51  Score=353.43  Aligned_cols=138  Identities=36%  Similarity=0.550  Sum_probs=125.1

Q ss_pred             ChHHHHHHHHhhhc-----CCCCCCChHHHHHHHHHHHhcCcccchhhhcccccccc-cccccchhcHHHHHhHHhhhcc
Q 045533            1 KEIEDAIQKLCPIY-----IHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEG-RFKSSLINDVQGMLSLYEAAYM   74 (242)
Q Consensus         1 ~EI~~~L~~i~~~~-----~~~~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G-~F~~~~~~d~~glL~LYeAS~l   74 (242)
                      +||+++|+++|+..     +.....||++|||+|||||||||+||||||++|+|++| +|++++.+||+||||||||||+
T Consensus        61 ~EI~~~L~~i~~~~~~~~~~~~~~~DL~~~AL~FRLLRqhGy~VS~dvF~~F~d~~g~~fk~~l~~Dv~glLsLYeAS~l  140 (207)
T d1n1ba1          61 DEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFL  140 (207)
T ss_dssp             HHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhchhccccccccccHHHHHHHHHHHHHcCCCCCHHHHHHhccCCCCchhhhHHHhHHHHHHHHHHHcc
Confidence            49999999999851     12245699999999999999999999999999999999 9999999999999999999999


Q ss_pred             CCCCccHHHHHHHHHHHHHHhHhhcC--CCCCchHHHHHHhcCCCccCChhhhHHHHhHHhhhccCCC
Q 045533           75 AVRGEHILDEAIAFTTTHLKSLVAQD--HVTPKLAEQINHALYRPLRKTLPRLEARYFMSMINSTSDH  140 (242)
Q Consensus        75 ~~~gE~iLdeA~~fs~~~L~~~~~~~--~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~  140 (242)
                      ++|||+|||+|++||++||++++.++  .++++|+.+|+|||+.|+|++|||+||||||+.|+  +++
T Consensus       141 ~~~gE~iLdeA~~Ft~~~L~~~l~~~~~~~~~~l~~~V~~AL~~P~~~~l~rleaR~yI~~Ye--~~~  206 (207)
T d1n1ba1         141 LRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYA--RRP  206 (207)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHH--HCT
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhCCCccCCCcHHHHHHhHHHhC--CCC
Confidence            99999999999999999999998642  35789999999999999999999999999999999  764

>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=8.6e-51  Score=347.46  Aligned_cols=134  Identities=44%  Similarity=0.777  Sum_probs=126.8

Q ss_pred             ChHHHHHHHHhhhcCCCCCCChHHHHHHHHHHHhcCcccchhhhcccccccccccccchhcHHHHHhHHhhhccCCCCcc
Q 045533            1 KEIEDAIQKLCPIYIHSNSPDLHTVSLHFRLLRQQGIKISCDVFEKFKDDEGRFKSSLINDVQGMLSLYEAAYMAVRGEH   80 (242)
Q Consensus         1 ~EI~~~L~~i~~~~~~~~~~Dl~~~AL~FRLLR~~Gy~VS~DvF~~F~d~~G~F~~~~~~d~~glL~LYeAS~l~~~gE~   80 (242)
                      +||+++|++||+.  +....||++|||+|||||||||+||||||++|+|++|+|++++++|++|||+||||||++++||+
T Consensus        62 ~EI~~~L~~i~~~--~~~~~dl~~~AL~FRLLRqhGy~Vs~dvF~~Fkd~~G~f~~~l~~D~~glLsLYeAS~l~~~gE~  139 (197)
T d5easa1          62 KEIDEILDQIYNQ--NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADD  139 (197)
T ss_dssp             HHHHHHHHHHHHH--CCCCCSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCGGGGGCHHHHHHHHHHHTTCCTTCG
T ss_pred             HHHHHHHHHHHHh--CCCCCcHHHHHHHHHHHHHcCcccCHHHHhhhccCCCCcccchhHhHHHHHHHHHHhccCCCCcH
Confidence            4999999999998  33567999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhhcCCCCCchHHHHHHhcCCCccCChhhhHHHHhHH-hhhccCCC
Q 045533           81 ILDEAIAFTTTHLKSLVAQDHVTPKLAEQINHALYRPLRKTLPRLEARYFMS-MINSTSDH  140 (242)
Q Consensus        81 iLdeA~~fs~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~-~Y~~~~~~  140 (242)
                      ||++|++||++||++.++  .++++|+.+|+|||+.|+|||+||+||||||+ .|+  +++
T Consensus       140 iLdeA~~Ft~~~L~~~~~--~~~~~l~~~V~~aL~~P~h~~l~rleaR~yI~~~Ye--~e~  196 (197)
T d5easa1         140 ILEDALAFSTIHLESAAP--HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYD--KEQ  196 (197)
T ss_dssp             GGTTHHHHHHHHHHHHGG--GCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGG--GCT
T ss_pred             HHHHHHHHHHHHHHHHHh--hcCccHHHHHHHHhCCCccCCCcHHHHHHHHHHHhc--ccC
Confidence            999999999999999988  67899999999999999999999999999995 688  654

>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=6.8e-45  Score=332.12  Aligned_cols=101  Identities=59%  Similarity=1.117  Sum_probs=99.2

Q ss_pred             ccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHhHHHhh
Q 045533          142 HNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSII  221 (242)
Q Consensus       142 ~n~~lLelAklDFn~~Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tii  221 (242)
                      .|++||||||||||+||++||+||++|+|||+++|+.++|||||||+||||||++|++||||||.+|++|||+++|+|++
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~aRdr~ve~Yfw~~~~~fEP~~s~~R~~~aK~~~l~ti~   80 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCchHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhh
Confidence            48999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCHHHHHHHHHhhC
Q 045533          222 DDTYDAYGTLEELSLFTEAVQ  242 (242)
Q Consensus       222 DD~yD~ygt~eEl~~ft~av~  242 (242)
                      ||+||+|||+|||++||+||+
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~  101 (328)
T d5easa2          81 DDTFDAYGTVKELEAYTDAIQ  101 (328)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHH
T ss_pred             hhhcccCCCHHHHHHHHHHHh
Confidence            999999999999999999985

>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]}

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=2.2e-44  Score=328.89  Aligned_cols=101  Identities=44%  Similarity=0.895  Sum_probs=99.2

Q ss_pred             ccHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHHHHHHhHHHhh
Q 045533          142 HNKTLLNFAKLDFNILLELHKEELNELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSII  221 (242)
Q Consensus       142 ~n~~lLelAklDFn~~Q~~hq~EL~~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tii  221 (242)
                      .|++||||||+|||+||++||+||++|+|||+++||+++|||||||+||||||++|++|||+||.+|++|||+++|+++|
T Consensus         1 ~N~~lLelAKlDFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~ii   80 (328)
T d1n1ba2           1 MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVI   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhh
Confidence            48999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCHHHHHHHHHhhC
Q 045533          222 DDTYDAYGTLEELSLFTEAVQ  242 (242)
Q Consensus       222 DD~yD~ygt~eEl~~ft~av~  242 (242)
                      ||+||+|||+|||++||+||+
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~  101 (328)
T d1n1ba2          81 DDIYDVYGTLDELELFTDTFK  101 (328)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHH
T ss_pred             hHHhcccCCHHHHHHHHHHHH
Confidence            999999999999999999985

>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]}

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Aristolochene/pentalenene synthase
domain: Pentalenene synthase
species: Streptomyces sp., UC5319 [TaxId: 1931]

Probab=98.23  E-value=2.7e-07  Score=79.70  Aligned_cols=78  Identities=18%  Similarity=0.225  Sum_probs=63.2

Q ss_pred             hHHHHHHHHH-HHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHH-HHHHHHhHHHhhcccccCCC--CHHHHHH
Q 045533          161 HKEELNELTK-WWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRK-IMTQLNYILSIIDDTYDAYG--TLEELSL  236 (242)
Q Consensus       161 hq~EL~~lsr-Ww~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~-~~aK~~~l~tiiDD~yD~yg--t~eEl~~  236 (242)
                      |..+++.-++ |+++.|+. .-|.+|+|.++++||.++.++.|+.+..|+ .+||.+.++.++||+||.++  +++++..
T Consensus        16 ~~~~~~~~~~~W~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~P~~~~~rl~l~~~~~~~~f~~DD~~D~~~~~~~~~~~~   94 (311)
T d1ps1a_          16 DHARAEAEQLAWPRSLGLI-RSDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPEDTKQ   94 (311)
T ss_dssp             THHHHHHSTTHHHHHTTSC-CSHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCC-CChHHHHHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccccCccccCHHHHHH
Confidence            4555554444 55789984 558999999999999999999999999998 67999999999999999775  4556655


Q ss_pred             HHH
Q 045533          237 FTE  239 (242)
Q Consensus       237 ft~  239 (242)
                      +++
T Consensus        95 ~~~   97 (311)
T d1ps1a_          95 LTD   97 (311)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]}

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Aristolochene/pentalenene synthase
domain: Aristolochene synthase
species: Fungus (Penicillium roqueforti) [TaxId: 5082]

Probab=95.76  E-value=0.0033  Score=53.08  Aligned_cols=72  Identities=14%  Similarity=0.128  Sum_probs=57.9

Q ss_pred             HHHHHHHhhcCCCCCCcchhHHHHHHHHhhccccCCCchhHHHHH-HHHHhHHHhhcccccCCCCHHHHHHHHHh
Q 045533          167 ELTKWWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIM-TQLNYILSIIDDTYDAYGTLEELSLFTEA  240 (242)
Q Consensus       167 ~lsrWw~~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~-aK~~~l~tiiDD~yD~ygt~eEl~~ft~a  240 (242)
                      ++..|..+.++- .-+-+|.+.+.+.|.-+++++-|.-+..|+.+ ++.+.++.++||.||. |+.++...+++.
T Consensus        21 ~~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~P~a~~e~L~l~a~~~~w~f~~DD~~d~-~~~~~~~~~~~~   93 (300)
T d1di1a_          21 EVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAYNNR   93 (300)
T ss_dssp             HHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCC-CCHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhhhcc-CChhhHHHHHHH
Confidence            456677665541 22357888999999889999999999999995 9999999999999995 688888777654