Citrus Sinensis ID: 045549

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MLEEEVTQEVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH
Secondary Structure (PSIPRED)
ccEEccccccccccEEEccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccHHHHccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccEEcc
Secondary Structure Prediction (SSPRO)
ccccccccHHccccEEEccccccccccccccccEEEEEEccccccccccccccccEEEEcccccccccccHHHHccccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEccccccccccc
Coil and Loop (DISEMBL)
MLEEEVTQEVCRDIKIqfgknsfdgikklpwknleylDFRSNLLqglfldpssnmkvflisnnrftreipclicnlstieipwpipetlskgsnlrtlnfngnelvgsvprsllncenlqvvdlgnnkiedilh
Flexible Loop (DISEMBL)
MLEEEVTQEVCRdikiqfgknsfdgikKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLncenlqvvdlgnnkiedilh
Low Complexity Region (SEG)
MLEEEVTQEVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH
Disordered region (IsUnstruct)
********EVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN*******
Disordered Region (DISOPRED)
MLEEEVTQEVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH
Disordered Region (DISEMBL)
********EVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH
Disordered Region (DISPRO)
*L*EEVTQEVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLEEEVTQEVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.985	0.155	0.308	5e-08
Q94AG2	625	Somatic embryogenesis rec	no	no	0.567	0.121	0.392	2e-07
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.559	0.059	0.337	9e-07
C0LGJ9	742	Probable LRR receptor-lik	no	no	0.716	0.129	0.317	2e-06
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.858	0.110	0.294	3e-06
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.723	0.077	0.305	3e-06
Q9LHP4	1141	Receptor-like protein kin	no	no	0.708	0.083	0.336	5e-06
C0LGP9	784	Probable leucine-rich rep	no	no	0.723	0.123	0.302	5e-06
C0LGQ9	1037	Probable LRR receptor-lik	no	no	0.858	0.110	0.285	9e-06
Q9SGP2	996	Receptor-like protein kin	no	no	0.798	0.107	0.333	1e-05

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 14/146 (9%)

Query: 2   LEEEVTQEVCRDIKIQFGKNSFDGIKKLPWKN--LEYLDFRSNLLQG---LFLDPSSNMK 56
           LE EV   + R   +    NSF   +    +   +E LD  SN  QG     +   S++ 
Sbjct: 411 LEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLG 470

Query: 57  VFLISNNRFTREIPCLICNLSTI---------EIPWPIPETLSKGSNLRTLNFNGNELVG 107
              +SNN F+  IP  I N S                +P+  SK + L +L+ + N+L G
Sbjct: 471 FLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEG 530

Query: 108 SVPRSLLNCENLQVVDLGNNKIEDIL 133
             P+SL+NC+ L++V++ +NKI+DI 
Sbjct: 531 KFPKSLINCKALELVNVESNKIKDIF 556

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94AG2|SERK1_ARATH Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 8/84 (9%)

Query: 54  NMKVFLISNNRFTREIPCLICNLSTI--------EIPWPIPETLSKGSNLRTLNFNGNEL 105
           N++   + +N  T  IP  + NL+ +            PIPE+L K S LR L  N N L
Sbjct: 94  NLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSL 153

Query: 106 VGSVPRSLLNCENLQVVDLGNNKI 129
            GS+P SL N   LQV+DL NN++
Sbjct: 154 TGSIPMSLTNITTLQVLDLSNNRL 177

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Phosphorylates BRI1 on 'Ser-887' and CDC48 on at least one threonine residue and on 'Ser-41'. Confers embryogenic competence. Acts redundantly with SERK2 as a control point for sporophytic development controlling male gametophyte production. Involved in the brassinolide signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 8/83 (9%)

Query: 55  MKVFLISNNRFTREIPCLICNLSTI-EIPW-------PIPETLSKGSNLRTLNFNGNELV 106
           +++  +  NRF+ E+P  I N + + EI W        IP ++ +  +L  L+   NELV
Sbjct: 435 LEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELV 494

Query: 107 GSVPRSLLNCENLQVVDLGNNKI 129
           G++P SL NC  + V+DL +N++
Sbjct: 495 GNIPASLGNCHQMTVIDLADNQL 517

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGJ9|Y2278_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g02780 OS=Arabidopsis thaliana GN=At2g02780 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 8/104 (7%)

Query: 32  KNLEYLDFRSNLLQGLFLDPS---SNMKVFLISNNRFTREIPCLICNLSTIEIP-----W 83
           KNL+ L  R N+  G   D     SN++   +  N+   E+P L   L+T+ +       
Sbjct: 155 KNLKSLVLRDNMFWGFVSDDLRGLSNLQELDLGGNKLGPEVPSLPSKLTTVSLKNNSFRS 214

Query: 84  PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN 127
            IPE + K +NL++L+ + NE  GS+P  L +  +LQ++ L  N
Sbjct: 215 KIPEQIKKLNNLQSLDLSSNEFTGSIPEFLFSIPSLQILSLDQN 258

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 14/129 (10%)

Query: 14  IKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLF---LDPSSNMKVFLISNNRFTR 67
           I+++F  NSF G        +  L ++D  +N   G      + S  +  F++SNN  T 
Sbjct: 433 IRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITG 492

Query: 68  EIPCLICN--------LSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENL 119
            IP  I N        LS+  I   +PE++S  + +  L  NGN L G +P  +    NL
Sbjct: 493 AIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNL 552

Query: 120 QVVDLGNNK 128
           + +DL +N+
Sbjct: 553 EYLDLSSNR 561

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 11/108 (10%)

Query: 33  NLEYLDFRSNLLQGLF---LDPSSNMKVFLISNNRFTREIPCLICNLSTIEI-------- 81
           NL++L    N L+G     +     ++V  +  NRF+ EIP  I N +++++        
Sbjct: 409 NLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHF 468

Query: 82  PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI 129
              IP ++ +   L  L+   NELVG +P SL NC  L ++DL +N++
Sbjct: 469 EGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQL 516

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 15/110 (13%)

Query: 33  NLEYLDFRSNLLQGLFLDPSSNMKV-----FLISNNRFTREIPCLICNLSTI-------- 79
           NL+ +D   NLL G    PSS  ++     F+IS+N+F+  IP  I N S++        
Sbjct: 323 NLKMIDLSLNLLSGSI--PSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKN 380

Query: 80  EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI 129
           +I   IP  L   + L       N+L GS+P  L +C +LQ +DL  N +
Sbjct: 381 QISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSL 430

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP9|IMK3_ARATH Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 12/109 (11%)

Query: 33  NLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIPCLICNLSTIE-------- 80
           +L++L    N L G  LD     S N++V  + +N  +   P  +CNL+ ++        
Sbjct: 222 SLQFLALDHNNLSGPILDTWGSKSLNLRVLSLDHNSLSGPFPFSLCNLTQLQDFSFSHNR 281

Query: 81  IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI 129
           I   +P  LSK + LR ++ +GN + G +P +L N  +L  +DL  NK+
Sbjct: 282 IRGTLPSELSKLTKLRKMDISGNSVSGHIPETLGNISSLIHLDLSQNKL 330

Can phosphorylate AGL24.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ9|Y4294_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 18/133 (13%)

Query: 14  IKIQFGKNSFDGIKKLP-----WKNLEYLDFRSNLLQGLF---LDPSSNMKVFLISNNRF 65
           +K+    NS  G+  LP     +K+L++LD   NL        +  S +++   +S N F
Sbjct: 81  VKLSMSNNSLSGV--LPNDLGSFKSLQFLDLSDNLFSSSLPKEIGRSVSLRNLSLSGNNF 138

Query: 66  TREIP----CLIC----NLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCE 117
           + EIP     LI     ++S+  +  P+P++L++ ++L  LN + N   G +PR      
Sbjct: 139 SGEIPESMGGLISLQSLDMSSNSLSGPLPKSLTRLNDLLYLNLSSNGFTGKMPRGFELIS 198

Query: 118 NLQVVDLGNNKIE 130
           +L+V+DL  N I+
Sbjct: 199 SLEVLDLHGNSID 211

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 22/129 (17%)

Query: 13  DIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFT-RE 68
           DI   FGK          ++NLE L    NLL G    FL   S +K+  +S N F+   
Sbjct: 147 DIPASFGK----------FENLEVLSLVYNLLDGTIPPFLGNISTLKMLNLSYNPFSPSR 196

Query: 69  IPCLICNLSTIEIPW--------PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQ 120
           IP    NL+ +E+ W         IP++L + S L  L+   N+LVG +P SL    N+ 
Sbjct: 197 IPPEFGNLTNLEVMWLTECHLVGQIPDSLGQLSKLVDLDLALNDLVGHIPPSLGGLTNVV 256

Query: 121 VVDLGNNKI 129
            ++L NN +
Sbjct: 257 QIELYNNSL 265

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
225459979	979	PREDICTED: receptor-like protein 12-like	0.865	0.118	0.382	8e-17
225462116	1001	PREDICTED: receptor-like protein 12-like	0.776	0.103	0.458	6e-16
359493479	814	PREDICTED: receptor-like protein 12-like	0.873	0.143	0.366	2e-15
359493546	985	PREDICTED: LRR receptor-like serine/thre	0.843	0.114	0.369	3e-15
359493544	978	PREDICTED: receptor-like protein 12-like	0.828	0.113	0.375	1e-14
359493539	1001	PREDICTED: receptor-like protein 12-like	0.895	0.119	0.339	7e-14
356553697	895	PREDICTED: receptor-like protein 12-like	0.768	0.115	0.362	9e-14
356553670	909	PREDICTED: receptor-like protein 12-like	0.768	0.113	0.362	9e-14
224116970	921	predicted protein [Populus trichocarpa]	0.783	0.114	0.374	2e-13
225455498	980	PREDICTED: receptor-like protein 12-like	0.828	0.113	0.354	2e-13

>gi|225459979|ref|XP_002267546.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 92.0 bits (227), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 75/149 (50%), Gaps = 33/149 (22%)

Query: 16  IQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICN 75
           +    NS  G K LPWKN+  LD  SNLLQG    P ++   F +S+N+ + EI  LIC 
Sbjct: 534 LNLSYNSISGFKMLPWKNIGILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEISSLICR 593

Query: 76  LSTIEI---------------------------------PWPIPETLSKGSNLRTLNFNG 102
            S++EI                                    IP+T  KG+ +R L+FN 
Sbjct: 594 ASSMEILDLSDNNLSGRLPHCLGNFSKYLSVLNLRRNRFHGNIPQTFLKGNAIRDLDFND 653

Query: 103 NELVGSVPRSLLNCENLQVVDLGNNKIED 131
           N+L G VPRSL+ C  L+V+DLGNNKI D
Sbjct: 654 NQLDGLVPRSLIICRKLEVLDLGNNKIND 682

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462116|ref|XP_002263233.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 72/120 (60%), Gaps = 16/120 (13%)

Query: 26  IKKLPWKNLEYLDFRSNLLQGLFLDPS-----SNMKVFLISNNRFTREIP-CL------- 72
            ++ PWKN+ +LD  SNLLQG    PS     S + V   SNN  +  IP CL       
Sbjct: 588 FERFPWKNMLFLDLHSNLLQGPL--PSLICEMSYISVLDFSNNNLSGLIPQCLGNFSESL 645

Query: 73  -ICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131
            + +L   ++   IPET SKG+ +R L FNGN+L G +PRSL+NC  LQV+DLGNN+I D
Sbjct: 646 SVLDLRMNQLHGNIPETFSKGNFIRNLGFNGNQLEGPLPRSLINCRRLQVLDLGNNRIND 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493479|ref|XP_003634609.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 73/150 (48%), Gaps = 33/150 (22%)

Query: 15  KIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLIC 74
            +    N   G + LPWK ++ LD RSNLLQG    P  +   F ISNN+ + EI   IC
Sbjct: 368 SLNLSYNLISGFELLPWKKIQILDLRSNLLQGPLPTPPYSTFFFAISNNKLSGEISPSIC 427

Query: 75  NLSTIEI---------------------------------PWPIPETLSKGSNLRTLNFN 101
            + +I +                                    IP+T  KG+ +R L+FN
Sbjct: 428 KVHSIGVLDLSNNNLSGRLPHCLGNFSKDLSVLNLQGNRFHGTIPQTFLKGNVIRNLDFN 487

Query: 102 GNELVGSVPRSLLNCENLQVVDLGNNKIED 131
           GN+L G VPRSL+ C  L+V+DLGNNKI D
Sbjct: 488 GNQLEGLVPRSLIICRELEVLDLGNNKIND 517

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493546|ref|XP_002267585.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 72/146 (49%), Gaps = 33/146 (22%)

Query: 21  NSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIE 80
           N   G + LPWKNL  LD  SNLLQG    P ++   F +S+N+ + EI  L C  S++ 
Sbjct: 545 NLISGFEMLPWKNLYILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEILSLFCKASSMR 604

Query: 81  I---------------------------------PWPIPETLSKGSNLRTLNFNGNELVG 107
           I                                    IP+T  KG+ +R L+FNGN+L G
Sbjct: 605 ILDLSNNNLSGMLPLCLGNFSKYLSVLNLGRNRFHGIIPQTFLKGNAIRNLDFNGNQLEG 664

Query: 108 SVPRSLLNCENLQVVDLGNNKIEDIL 133
            +PRSL+ C  L+V+DLGNNKI D  
Sbjct: 665 LLPRSLIICRKLEVLDLGNNKINDTF 690

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493544|ref|XP_002267509.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/144 (37%), Positives = 72/144 (50%), Gaps = 33/144 (22%)

Query: 21  NSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIE 80
           NS  G + LPW+NL  LD  SNLLQG      ++   F +S+N+ + EI  LIC  S++ 
Sbjct: 538 NSISGFEMLPWENLYTLDLHSNLLQGPLPTLPNSTFFFSVSHNKLSGEISSLICKASSMR 597

Query: 81  I---------------------------------PWPIPETLSKGSNLRTLNFNGNELVG 107
           I                                    IP+T  KG+ +R L+FN N+L G
Sbjct: 598 IFDLSNNNLSGVLPHCLGNFSKDLFVLNLRRNQFHGIIPQTFLKGNAIRNLDFNDNQLEG 657

Query: 108 SVPRSLLNCENLQVVDLGNNKIED 131
            VPRSL+ C  L+V+DLGNNKI D
Sbjct: 658 PVPRSLIICRKLEVLDLGNNKIND 681

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493539|ref|XP_002267388.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 33/153 (21%)

Query: 14  IKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLI 73
           + +    N   G + LPWKN+  LD  SNLLQG    P ++   F +S+N+ + EI  LI
Sbjct: 554 LYLNLSYNIISGFEMLPWKNMHILDLHSNLLQGPLPIPPNSTFFFSVSHNKLSGEISPLI 613

Query: 74  CNLSTIEI---------------------------------PWPIPETLSKGSNLRTLNF 100
           C +S++ +                                    IP+T  KG+ +R L+F
Sbjct: 614 CKVSSMGVLDLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQTFLKGNAIRNLDF 673

Query: 101 NGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133
           N N+L G VPRSL+    L+V+DLGNNKI D  
Sbjct: 674 NDNQLEGLVPRSLIIYRKLEVLDLGNNKINDTF 706

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553697|ref|XP_003545189.1| PREDICTED: receptor-like protein 12-like [Glycine max]

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 66/135 (48%), Gaps = 32/135 (23%)

Query: 31  WKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI--------- 81
           WKN+ Y+D   N LQG    P + +  FL+SNN  T  IP  +CN S+++I         
Sbjct: 484 WKNISYIDLSFNKLQGDLPIPPNGIHYFLVSNNELTGNIPSAMCNASSLKILNLAHNNLT 543

Query: 82  -PWP----------------------IPETLSKGSNLRTLNFNGNELVGSVPRSLLNCEN 118
            P P                      IP   SKG+ L T+  NGN+L G +PR L +C N
Sbjct: 544 GPIPQCLGTFPSLWALDLQKNNLYGNIPANFSKGNALETIKLNGNQLDGQLPRCLAHCTN 603

Query: 119 LQVVDLGNNKIEDIL 133
           L+V+DL +N IED  
Sbjct: 604 LEVLDLADNNIEDTF 618

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553670|ref|XP_003545176.1| PREDICTED: receptor-like protein 12-like [Glycine max]

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 69/135 (51%), Gaps = 32/135 (23%)

Query: 31  WKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI--------- 81
           WKN++++D   N LQG    P + ++ FL+SNN  T  IP  +CN S+++I         
Sbjct: 481 WKNIDFIDLSFNKLQGDLPIPPNGIEYFLVSNNELTGNIPSAMCNASSLKILNLAHNNLA 540

Query: 82  -PWP----------------------IPETLSKGSNLRTLNFNGNELVGSVPRSLLNCEN 118
            P P                      IP   SKG+ L T+  NGN+L G +PRSL +C N
Sbjct: 541 GPIPQCLGTFPSLWTLDLQKNNLYGNIPGNFSKGNALGTIKLNGNQLDGPLPRSLAHCTN 600

Query: 119 LQVVDLGNNKIEDIL 133
           L+V+DL +N IED  
Sbjct: 601 LEVLDLADNNIEDTF 615

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa]

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 34/139 (24%)

Query: 26  IKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI---- 81
           + +LP  +L+YLD  SNLLQ  F     +M + LI+NN+ T EIP  ICN++T +I    
Sbjct: 492 VNELP-PSLQYLDLTSNLLQQPFPILPQSMYILLIANNKLTGEIPPWICNITTFQIINLS 550

Query: 82  -----------------------------PWPIPETLSKGSNLRTLNFNGNELVGSVPRS 112
                                           IP + ++G+ +R+L+ NGNEL GS+P S
Sbjct: 551 NNSLSGNIPQCLGNFSTELSVLNLRSNSFHGTIPGSFTEGNKIRSLDLNGNELEGSLPLS 610

Query: 113 LLNCENLQVVDLGNNKIED 131
           L NC+ L+V+DLGNN I D
Sbjct: 611 LANCKMLEVLDLGNNYIND 629

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455498|ref|XP_002264793.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 71/144 (49%), Gaps = 33/144 (22%)

Query: 21  NSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIE 80
           NS  G + LPWKN+  LD  SNLLQG    P ++   F + +N+ +  I  LIC +S+I 
Sbjct: 540 NSISGFEMLPWKNVGILDLHSNLLQGALPTPPNSTFFFSVFHNKLSGGISPLICKVSSIR 599

Query: 81  I---------------------------------PWPIPETLSKGSNLRTLNFNGNELVG 107
           +                                    IP++  KG+ +R L+FN N L G
Sbjct: 600 VLDLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQSFLKGNVIRNLDFNDNRLEG 659

Query: 108 SVPRSLLNCENLQVVDLGNNKIED 131
            VPRSL+ C  L+V++LGNNKI D
Sbjct: 660 LVPRSLIICRKLEVLNLGNNKIND 683

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.828	0.108	0.363	7.4e-11
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.970	0.165	0.330	6.1e-10
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.947	0.158	0.333	6.3e-10
TAIR|locus:2040035	671	RLP20 "receptor like protein 2	0.425	0.084	0.456	5.8e-09
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.977	0.154	0.317	6.2e-09
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.820	0.123	0.325	1.4e-08
TAIR|locus:2046535	740	RLP28 "receptor like protein 2	0.589	0.106	0.357	1.4e-08
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.813	0.126	0.330	1.7e-08
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.820	0.124	0.358	2.2e-08
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.820	0.124	0.375	2.2e-08

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 48/132 (36%), Positives = 68/132 (51%)

Query:    16 IQFGKNSFDG----IKKLPWKNLEYLDFRSNLLQG-LFLDPSSNMKVFLISNNRFTREIP 70
             +    NS  G    +K  P   L  +D  SN  QG LFL PS +++ F  SNN FT +IP
Sbjct:   570 VDLSNNSLSGFHVSVKASPESQLTSVDLSSNAFQGPLFL-PSKSLRYFSGSNNNFTGKIP 628

Query:    71 CLICNLSTIEI------------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCEN 118
               IC LS++EI            PW + ETL   S+L  L+   N L GS+P   +N   
Sbjct:   629 RSICGLSSLEILDLSNNNLNGSLPWCL-ETLM--SSLSDLDLRNNSLSGSLPEIFMNATK 685

Query:   119 LQVVDLGNNKIE 130
             L+ +D+ +N++E
Sbjct:   686 LRSLDVSHNRME 697

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 6.1e-10, P = 6.1e-10
 Identities = 47/142 (33%), Positives = 74/142 (52%)

Query:     2 LEEEVTQEVCRDIKIQFGKNSFDGIKKLPWKN--LEYLDFRSNLLQGLFLDPSSNMKV-- 57
             LE EV   + R        NSF   +K+  K   ++ LD   N  +G F      +K   
Sbjct:   354 LEGEVPSWLWRLSSTMLSHNSFSSFEKIYSKETMIQVLDLSFNSFRGTFPVWICKLKGLH 413

Query:    58 FL-ISNNRFTREIP-CLI-CNLSTI-----EIPWPIPETLSKGSNLRTLNFNGNELVGSV 109
             FL +SNN F   IP CL   NL+ +     +    +P+  +  +NL++L+ +GN+L G  
Sbjct:   414 FLDLSNNLFNGSIPLCLRNFNLTGLILGNNKFSGTLPDIFANNTNLQSLDVSGNQLEGKF 473

Query:   110 PRSLLNCENLQVVDLGNNKIED 131
             P+SL+NC+ L  V++ +NKI+D
Sbjct:   474 PKSLINCKGLHFVNVESNKIKD 495

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 6.3e-10, P = 6.3e-10
 Identities = 46/138 (33%), Positives = 68/138 (49%)

Query:     5 EVTQEVCRDIKIQ---FGKNSFDGIKKLPWKNLEYLDFRSNLLQG---LFLDPSSNMKVF 58
             E + EV  +  +Q   F  NS  G    P     YL   +N   G   L +   S++ V 
Sbjct:   349 EGSSEVLLNSSVQLLDFAYNSMTGAFPTPPLGSIYLSAWNNSFTGNIPLSICNRSSLIVL 408

Query:    59 LISNNRFTREIP-CL----ICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSL 113
              +S N+FT  IP CL    + NL    +   IP+    G+  +TL+   N L G +P+SL
Sbjct:   409 DLSYNKFTGPIPQCLSNLKVVNLRKNSLEGSIPDEFHSGAKTQTLDVGYNRLTGKLPKSL 468

Query:   114 LNCENLQVVDLGNNKIED 131
             LNC +L+ + + NN+IED
Sbjct:   469 LNCSSLRFLSVDNNRIED 486

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040035 RLP20 "receptor like protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
 Identities = 26/57 (45%), Positives = 37/57 (64%)

Query:    75 NLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131
             NL    +   IPET   GS++RTL+   N L G +PRSLLNC +L+ + + NN+I+D
Sbjct:   323 NLRKNNLEGTIPETFIVGSSIRTLDVGYNRLTGKLPRSLLNCSSLEFLSVDNNRIKD 379

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 46/145 (31%), Positives = 74/145 (51%)

Query:     2 LEEEVTQEVCRDIKIQFGKNSFDGIKKLPWKN--LEYLDFRSNLLQG---LFLDPSSNMK 56
             LE EV   + R   +    NSF   +    +   +E LD  SN  QG     +   S++ 
Sbjct:   411 LEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLG 470

Query:    57 VFLISNNRFTREIPCLICNLS-TIE--------IPWPIPETLSKGSNLRTLNFNGNELVG 107
                +SNN F+  IP  I N S +I+            +P+  SK + L +L+ + N+L G
Sbjct:   471 FLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEG 530

Query:   108 SVPRSLLNCENLQVVDLGNNKIEDI 132
               P+SL+NC+ L++V++ +NKI+DI
Sbjct:   531 KFPKSLINCKALELVNVESNKIKDI 555

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 39/120 (32%), Positives = 64/120 (53%)

Query:    21 NSFDG-IKKLPWKNLEYLDFRSNLLQG---LFLDPSSNMKVFLISNNRFTREIPCLICNL 76
             N+F+G +  LP  +++     SN       L +   S++    +S N FT  IP  + NL
Sbjct:   472 NNFEGALPDLPL-SIKGFGVASNSFTSEIPLSICNRSSLAAIDLSYNNFTGPIPPCLRNL 530

Query:    77 STI-----EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131
               +      +   IP+ L  G++LRTL+ + N L G +PRS +NC +L+ + + NN+IED
Sbjct:   531 ELVYLRNNNLEGSIPDALCDGASLRTLDVSHNRLTGKLPRSFVNCSSLKFLSVINNRIED 590

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2046535 RLP28 "receptor like protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 30/84 (35%), Positives = 51/84 (60%)

Query:    53 SNMKVFLISNNRFTREIPCLICNLSTIEI-----PWPIPETLSKGSNLRTLNFNGNELVG 107
             S++    +  N FT +IP  + NL+ + +        IP+TL  G +L+TL+   N + G
Sbjct:   409 SSLAALSLPYNNFTGKIPQCLSNLTFVHLRKNNLEGSIPDTLCAGDSLQTLDIGFNLISG 468

Query:   108 SVPRSLLNCENLQVVDLGNNKIED 131
             ++PRSLLNC +L+ + + NN+I+D
Sbjct:   469 TLPRSLLNCSSLEFLSVDNNRIKD 492

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 40/121 (33%), Positives = 65/121 (53%)

Query:    21 NSFDGIKKLPWKNLEYLDFRS--NLLQG---LFLDPSSNMKVFLISNNRFTREIP-CL-- 72
             N+F+G   LP   L  + F +  N   G   L +   +++ +  +S N FT  IP CL  
Sbjct:   459 NNFEGA--LPTLPLSIIGFSAIHNSFTGEIPLSICNRTSLTMVDLSYNNFTGPIPQCLSN 516

Query:    73 --ICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130
                 NL   ++   IP+T    S+L++L+   N L G +PRSLLNC +L+ + + NN+++
Sbjct:   517 FMFVNLRKNDLEGSIPDTFYTDSSLKSLDVGYNRLTGKLPRSLLNCSSLRFLSVDNNRVK 576

Query:   131 D 131
             D
Sbjct:   577 D 577

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 43/120 (35%), Positives = 61/120 (50%)

Query:    21 NSFDG-IKKLPWKNLEYLDFRSNLLQG---LFLDPSSNMKVFLISNNRFTREIP-CL--- 72
             NS +G +  LP  ++ Y   R N  +G   L +   S++ V  +  N FT  IP CL   
Sbjct:   473 NSLEGALPHLPL-SIIYFSARYNRFKGDIPLSICNRSSLDVLDLRYNNFTGPIPPCLSNL 531

Query:    73 -ICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131
                NL    +   IP+T    + LR+L+   N L G +PRSLLNC  LQ + + +N IED
Sbjct:   532 LFLNLRKNNLEGSIPDTYFADAPLRSLDVGYNRLTGKLPRSLLNCSALQFLSVDHNGIED 591

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 45/120 (37%), Positives = 63/120 (52%)

Query:    21 NSFDG-IKKLPWKNLEYLDFRSNLLQG-LFLDPSSNMK-VFL-ISNNRFTREIP-C---- 71
             N+ +G +  LP  ++ Y   R+N   G + L   S    VFL +S N FT  IP C    
Sbjct:   474 NNLEGALPHLPL-SVNYFSARNNRYGGDIPLSICSRRSLVFLDLSYNNFTGPIPPCPSNF 532

Query:    72 LICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131
             LI NL    +   IP+T    + LR+L+   N L G +PRSLLNC  LQ + + +N I+D
Sbjct:   533 LILNLRKNNLEGSIPDTYYADAPLRSLDVGYNRLTGKLPRSLLNCSALQFLSVDHNGIKD 592

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00032000001 SubName- Full=Chromosome chr18 scaffold_61, whole genome shotgun sequence; (539 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	134
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 20/146 (13%)

Query: 2   LEEEVTQEV--CRDIK-IQFGKNSFDG-----IKKLPWKNLEYLDFRSNLLQGLFLDPSS 53
           LE E+ + +  CR ++ ++   NSF G       KLP     +LD  +N LQG       
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY--FLDISNNNLQGRINSRKW 449

Query: 54  NM---KVFLISNNRFTREIPCLI-------CNLSTIEIPWPIPETLSKGSNLRTLNFNGN 103
           +M   ++  ++ N+F   +P           +LS  +    +P  L   S L  L  + N
Sbjct: 450 DMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509

Query: 104 ELVGSVPRSLLNCENLQVVDLGNNKI 129
           +L G +P  L +C+ L  +DL +N++
Sbjct: 510 KLSGEIPDELSSCKKLVSLDLSHNQL 535

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 6e-07
 Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 12/112 (10%)

Query: 28  KLPWKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIP-CLICNLSTIE-- 80
           +LP+  ++ ++  +N L G   D     SS+++   +SNN FT  IP   I NL T++  
Sbjct: 91  RLPY--IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS 148

Query: 81  ---IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI 129
              +   IP  +   S+L+ L+  GN LVG +P SL N  +L+ + L +N++
Sbjct: 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 41/128 (32%), Positives = 58/128 (45%), Gaps = 14/128 (10%)

Query: 14  IKIQFGKNSFDG-IKKL--PWKNLEYLDFRSNLLQGLF---LDPSSNMKVFLISNNRFTR 67
           I +    NS  G I +L    +NLE L   SN   G     L     ++V  + +N+F+ 
Sbjct: 287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346

Query: 68  EIP--------CLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENL 119
           EIP          + +LST  +   IPE L    NL  L    N L G +P+SL  C +L
Sbjct: 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406

Query: 120 QVVDLGNN 127
           + V L +N
Sbjct: 407 RRVRLQDN 414

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 8/62 (12%)

Query: 60  ISNNRFTREIPCLICNLSTIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPR 111
           +S N     IP  + +++++E+           IPE+L + ++LR LN NGN L G VP 
Sbjct: 449 LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Query: 112 SL 113
           +L
Sbjct: 509 AL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 11/111 (9%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIP--WP-- 84
           + L  LD   N L G     +    N+++  + +N FT +IP  + +L  +++   W   
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 85  ----IPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131
               IP+ L K +NL  L+ + N L G +P  L +  NL  + L +N +E 
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 21  NSFDG-IKKLPWK--NLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICN 75
           N+  G I    W   +L+ L    N   G   D   S  ++   +S N+F+  +P  + +
Sbjct: 438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGS 497

Query: 76  LSTI--------EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN 127
           LS +        ++   IP+ LS    L +L+ + N+L G +P S      L  +DL  N
Sbjct: 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557

Query: 128 KI 129
           ++
Sbjct: 558 QL 559

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 9/106 (8%)

Query: 33  NLEYLDFRSNLLQGLFLDPS-SNMKVFLISNNRFTREIPCLICNLSTIEI--------PW 83
           +L YL+  +N   G     S  N++   +SNN  + EIP  I + S++++          
Sbjct: 119 SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178

Query: 84  PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI 129
            IP +L+  ++L  L    N+LVG +PR L   ++L+ + LG N +
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 85  IPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI 129
           IP  +SK  +L+++N +GN + G++P SL +  +L+V+DL  N  
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 11/110 (10%)

Query: 33  NLEYLDFRSNLLQG---LFLDPSSNMKVFLISNNRFTREIPCLICNLSTIE--------I 81
           +L+ LD   N+L G     L   ++++   +++N+   +IP  +  + +++        +
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224

Query: 82  PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131
              IP  +   ++L  L+   N L G +P SL N +NLQ + L  NK+  
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 15/110 (13%)

Query: 33  NLEYLDFRSNLLQGLFLDPSS-----NMKVFLISNNRFTREIPCLICNLSTI-------- 79
           +L +LD   N L G    PSS     N++   +  N+ +  IP  I +L  +        
Sbjct: 237 SLNHLDLVYNNLTGPI--PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294

Query: 80  EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI 129
            +   IPE + +  NL  L+   N   G +P +L +   LQV+ L +NK 
Sbjct: 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 33.7 bits (78), Expect = 0.003
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 74  CNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI 129
             L+ I              NL+ L+ +GN L    P +     +L+ +DL  N +
Sbjct: 10  NRLTVIP-----DGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 19/124 (15%)

Query: 20  KNSFDGIKKLP----WKNLEYLDFRSNLLQGL----FLDPSSNMKVFLISNNRFTREIP- 70
           +N F G   LP     K LE LD   N   G         S  M++ L S N+ + EIP 
Sbjct: 461 RNKFFG--GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL-SENKLSGEIPD 517

Query: 71  -------CLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVD 123
                   +  +LS  ++   IP + S+   L  L+ + N+L G +P++L N E+L  V+
Sbjct: 518 ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577

Query: 124 LGNN 127
           + +N
Sbjct: 578 ISHN 581

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.52
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.49
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.4
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.38
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.35
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.31
PLN03150	623	hypothetical protein; Provisional	99.3
PLN03150	623	hypothetical protein; Provisional	99.28
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.22
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.2
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.18
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.17
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.16
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.13
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.12
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.11
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.82
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.79
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.78
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.75
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.6
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.56
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.54
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.49
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.45
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.4
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.37
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.32
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.28
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.18
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.15
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.1
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.08
PRK15386	426	type III secretion protein GogB; Provisional	97.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.95
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.89
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.78
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.62
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.62
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.6
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.59
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.57
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.14
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.11
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.85
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.7
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.58
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.57
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.53
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.52
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.4
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.37
PRK15386	426	type III secretion protein GogB; Provisional	96.17
smart00370	26	LRR Leucine-rich repeats, outliers.	95.97
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.97
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.23
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.5
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.33
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	92.47
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.81
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	90.47
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	90.2
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.9

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.73  E-value=1.2e-17  Score=130.06  Aligned_cols=46  Identities=24%  Similarity=0.377  Sum_probs=19.1

Q ss_pred             CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           86 PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        86 ~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      |..++.+++|+.|++++|.+.+.+|..++++++|+.|++++|.+++
T Consensus       205 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  250 (968)
T PLN00113        205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG  250 (968)
T ss_pred             ChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence            3333344444444444444443344444444444444444444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.70  E-value=6.6e-17  Score=126.05  Aligned_cols=128  Identities=27%  Similarity=0.408  Sum_probs=114.4

Q ss_pred             cccCCcccEEEcCCCccCC-CCcccc---cCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc
Q 045549            7 TQEVCRDIKIQFGKNSFDG-IKKLPW---KNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI   81 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~-~~~~~~---~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~   81 (134)
                      +..+++|+.|++++|.+.+ +|..++   .+|++|++++|.+++..|.. ++.|++|++++|.+++..|..++.+.+|+.
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  168 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV  168 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence            4578999999999999986 887654   89999999999999887776 899999999999999899999998888877


Q ss_pred             --------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549           82 --------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH  134 (134)
Q Consensus        82 --------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  134 (134)
                              .+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|
T Consensus       169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  229 (968)
T PLN00113        169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP  229 (968)
T ss_pred             EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence                    34678889999999999999999998899999999999999999999998765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.52  E-value=8e-16  Score=96.97  Aligned_cols=120  Identities=19%  Similarity=0.337  Sum_probs=78.7

Q ss_pred             cCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc---
Q 045549            9 EVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      .+.+++.|.+++|.++-+|..+.  .+++.|++.+|++....+..  ++.|+.|.++.|++. ..|..|+.++.|..   
T Consensus        31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence            45566777777777776666653  67777777777776654443  666666666666666 66666665555443   


Q ss_pred             -----------------------------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549           82 -----------------------------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        82 -----------------------------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                                                   ...+|..++++++|++|.+..|.+- .+|..++.++.|++|++++|+++
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence                                         2245666677777777777777666 66777777777777777777765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.49  E-value=4.3e-15  Score=109.27  Aligned_cols=126  Identities=24%  Similarity=0.331  Sum_probs=100.5

Q ss_pred             ccccccccCCcccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccCccccC
Q 045549            2 LEEEVTQEVCRDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIPCLICN   75 (134)
Q Consensus         2 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~~~~~~   75 (134)
                      ||.++| .+..|+.|++++|+++.+|..+  ..++-+|++++|++.. +|..    ++.|-+||+++|+++ .+|+.+..
T Consensus        95 iP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR  171 (1255)
T KOG0444|consen   95 IPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR  171 (1255)
T ss_pred             CCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccchhh-hcCHHHHH
Confidence            344444 5677888888888888888766  3778888888888775 4443    788999999999999 88888776


Q ss_pred             CCCccc---------------------------------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEE
Q 045549           76 LSTIEI---------------------------------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVV  122 (134)
Q Consensus        76 l~~L~~---------------------------------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L  122 (134)
                      +.+|+.                                 ...+|..+..+.+|..++++.|.+. ..|+++.++++|+.|
T Consensus       172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrL  250 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRL  250 (1255)
T ss_pred             HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhee
Confidence            666554                                 2356777778889999999999998 889999999999999


Q ss_pred             EcCCCcccc
Q 045549          123 DLGNNKIED  131 (134)
Q Consensus       123 ~l~~n~l~~  131 (134)
                      ++++|.|+-
T Consensus       251 NLS~N~ite  259 (1255)
T KOG0444|consen  251 NLSGNKITE  259 (1255)
T ss_pred             ccCcCceee
Confidence            999999863

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.40  E-value=9e-14  Score=101.32  Aligned_cols=127  Identities=20%  Similarity=0.153  Sum_probs=75.3

Q ss_pred             cccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCC
Q 045549            5 EVTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLST   78 (134)
Q Consensus         5 ~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~   78 (134)
                      +-.+.++.|+.|+|+.|.++.++...+   .++++|++++|+++......   +.+|.+|.|++|+++..-+..|+.+++
T Consensus       143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~  222 (873)
T KOG4194|consen  143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK  222 (873)
T ss_pred             HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch
Confidence            334456666666676666666555443   55666666666666442222   445555556666655222233333443


Q ss_pred             ccc--------------------------------------------------------cccCCccCcCCCCCcEEEccC
Q 045549           79 IEI--------------------------------------------------------PWPIPETLSKGSNLRTLNFNG  102 (134)
Q Consensus        79 L~~--------------------------------------------------------~~~~~~~~~~~~~L~~l~l~~  102 (134)
                      |+.                                                        ......++.++++|++|++++
T Consensus       223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~  302 (873)
T KOG4194|consen  223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY  302 (873)
T ss_pred             hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence            332                                                        112233555677777888888


Q ss_pred             CccccCccccccCCCCCcEEEcCCCcccc
Q 045549          103 NELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus       103 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      |.|....++.+..+++|++|+++.|+|+.
T Consensus       303 NaI~rih~d~WsftqkL~~LdLs~N~i~~  331 (873)
T KOG4194|consen  303 NAIQRIHIDSWSFTQKLKELDLSSNRITR  331 (873)
T ss_pred             hhhheeecchhhhcccceeEecccccccc
Confidence            88876667777777888888888887764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.38  E-value=2.2e-14  Score=104.40  Aligned_cols=125  Identities=15%  Similarity=0.148  Sum_probs=64.3

Q ss_pred             ccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCc
Q 045549            6 VTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTI   79 (134)
Q Consensus         6 ~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L   79 (134)
                      .|+++++++.|.+..|.+.++.+..|   ..++.|+++.|++....-..   +++|++|++++|.+....++.+..+.+|
T Consensus       240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL  319 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL  319 (873)
T ss_pred             hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence            45555555555555555555555432   55666666666655433222   5555666666665555555555544444


Q ss_pred             cc-------cccC-------------------------CccCcCCCCCcEEEccCCccccCccc---cccCCCCCcEEEc
Q 045549           80 EI-------PWPI-------------------------PETLSKGSNLRTLNFNGNELVGSVPR---SLLNCENLQVVDL  124 (134)
Q Consensus        80 ~~-------~~~~-------------------------~~~~~~~~~L~~l~l~~n~l~~~~p~---~~~~l~~L~~L~l  124 (134)
                      +.       ...+                         ...|..+.+|+.|+|.+|.+.+.+-+   .|.++++|+.|++
T Consensus       320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l  399 (873)
T KOG4194|consen  320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL  399 (873)
T ss_pred             eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence            44       0111                         12334445555555555555543322   3455556666666


Q ss_pred             CCCccc
Q 045549          125 GNNKIE  130 (134)
Q Consensus       125 ~~n~l~  130 (134)
                      .||++.
T Consensus       400 ~gNqlk  405 (873)
T KOG4194|consen  400 TGNQLK  405 (873)
T ss_pred             cCceee
Confidence            666554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.35  E-value=2.8e-14  Score=105.10  Aligned_cols=118  Identities=22%  Similarity=0.415  Sum_probs=79.9

Q ss_pred             ccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc--
Q 045549            8 QEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI--   81 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--   81 (134)
                      +++.+|..++++.|++..+|+.++  ++|++|++++|.++.+.-..  ...+++|.++.|.++ .+|.+++++++|+.  
T Consensus       219 d~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy  297 (1255)
T KOG0444|consen  219 DDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLY  297 (1255)
T ss_pred             hhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence            345677778888888888888775  78888888888877653333  667777888888887 77777777776655  


Q ss_pred             -------ccc-----------------------CCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCC
Q 045549           82 -------PWP-----------------------IPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN  127 (134)
Q Consensus        82 -------~~~-----------------------~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  127 (134)
                             ...                       +|+.+.+|..|+.|.++.|++. .+|+.+.-++.|++||++.|
T Consensus       298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             hccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCC
Confidence                   122                       3555555556666666666655 55666666666666666655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.31  E-value=4.3e-12  Score=96.57  Aligned_cols=76  Identities=28%  Similarity=0.441  Sum_probs=51.5

Q ss_pred             CCccEEEcccCccccccCccccCCCCccc----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCc
Q 045549           53 SNMKVFLISNNRFTREIPCLICNLSTIEI----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNK  128 (134)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  128 (134)
                      .+|+.|++++|.++ .+|.....+..|..    ...+|..   ..+|+.|++++|+++ .+|..++++++|..+++++|.
T Consensus       382 ~~L~~LdLs~N~Lt-~LP~l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        382 SGLKELIVSGNRLT-SLPVLPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             cccceEEecCCccc-CCCCcccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence            35666666666666 34444433433333    2233432   245677888889888 789999999999999999999


Q ss_pred             ccccC
Q 045549          129 IEDIL  133 (134)
Q Consensus       129 l~~~~  133 (134)
                      ++|.+
T Consensus       457 Ls~~~  461 (788)
T PRK15387        457 LSERT  461 (788)
T ss_pred             CCchH
Confidence            99864

>PLN03150 hypothetical protein; Provisional

Probab=99.30  E-value=5.3e-12  Score=94.86  Aligned_cols=43  Identities=37%  Similarity=0.554  Sum_probs=24.0

Q ss_pred             CccCcCCCCCcEEEccCCccccCccccccCC-CCCcEEEcCCCc
Q 045549           86 PETLSKGSNLRTLNFNGNELVGSVPRSLLNC-ENLQVVDLGNNK  128 (134)
Q Consensus        86 ~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l-~~L~~L~l~~n~  128 (134)
                      |..++.+++|+.|++++|.+.|.+|..++.. .++..+++.+|.
T Consensus       483 P~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             chHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            4444555666666666666666666655543 244555555554

>PLN03150 hypothetical protein; Provisional

Probab=99.28  E-value=1.4e-11  Score=92.60  Aligned_cols=86  Identities=22%  Similarity=0.382  Sum_probs=72.4

Q ss_pred             CCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccccCc
Q 045549           33 NLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSV  109 (134)
Q Consensus        33 ~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~  109 (134)
                      .++.|++++|.+++..|..   ++.|+.|++++|.+.+.+                |..++.+++|+.|++++|.+.|.+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~i----------------P~~~~~l~~L~~LdLs~N~lsg~i  482 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI----------------PPSLGSITSLEVLDLSYNSFNGSI  482 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcC----------------ChHHhCCCCCCEEECCCCCCCCCC
Confidence            3677889999988877765   788999999999888543                445667788999999999999889


Q ss_pred             cccccCCCCCcEEEcCCCcccccCC
Q 045549          110 PRSLLNCENLQVVDLGNNKIEDILH  134 (134)
Q Consensus       110 p~~~~~l~~L~~L~l~~n~l~~~~~  134 (134)
                      |+.++.+++|+.|++++|.++|.+|
T Consensus       483 P~~l~~L~~L~~L~Ls~N~l~g~iP  507 (623)
T PLN03150        483 PESLGQLTSLRILNLNGNSLSGRVP  507 (623)
T ss_pred             chHHhcCCCCCEEECcCCcccccCC
Confidence            9999999999999999999998876

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.28  E-value=7.4e-13  Score=92.94  Aligned_cols=127  Identities=28%  Similarity=0.404  Sum_probs=91.0

Q ss_pred             ccccccccCC--cccEEEcCCCccCCCCccc--------------------------ccCCcEEEccCcccCCcCCCC--
Q 045549            2 LEEEVTQEVC--RDIKIQFGKNSFDGIKKLP--------------------------WKNLEYLDFRSNLLQGLFLDP--   51 (134)
Q Consensus         2 ~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~--------------------------~~~L~~L~l~~n~l~~~~~~~--   51 (134)
                      +|.|+|+...  -++.++++.|++.++|+..                          ++++..|++++|.+-...-..  
T Consensus       377 VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~  456 (565)
T KOG0472|consen  377 VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGS  456 (565)
T ss_pred             CCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhh
Confidence            4556665443  4666788888877766533                          156677777777665432222  


Q ss_pred             CCCccEEEcccCccccccCccccCCCCccc-------cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEE
Q 045549           52 SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVD  123 (134)
Q Consensus        52 l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~  123 (134)
                      +..||.++++.|+|. .+|..+..+..+..       .+.+ +.++..|.+|..|++.+|.+. .+|..+++|++|+.|.
T Consensus       457 lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLe  534 (565)
T KOG0472|consen  457 LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLE  534 (565)
T ss_pred             hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEE
Confidence            556888888888777 67766555444433       2333 445889999999999999999 8899999999999999


Q ss_pred             cCCCccc
Q 045549          124 LGNNKIE  130 (134)
Q Consensus       124 l~~n~l~  130 (134)
                      +.||.|.
T Consensus       535 L~gNpfr  541 (565)
T KOG0472|consen  535 LDGNPFR  541 (565)
T ss_pred             ecCCccC
Confidence            9999986

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.22  E-value=1.5e-12  Score=94.53  Aligned_cols=122  Identities=20%  Similarity=0.234  Sum_probs=102.0

Q ss_pred             ccCCcccEEEcCCCccCCCCcccc-cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc---
Q 045549            8 QEVCRDIKIQFGKNSFDGIKKLPW-KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~~~~~~~-~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      .++..|++++++.|++..+|..+| .-|+.|.+++|+++......  ...+..||.+.|.+. .+|..++.+.+|..   
T Consensus       118 ~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~v  196 (722)
T KOG0532|consen  118 CNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNV  196 (722)
T ss_pred             hhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHH
Confidence            456778889999999988888776 66899999999988654444  778889999999988 88888888887776   


Q ss_pred             ----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           82 ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 ----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                          ...+|+++.. -.|..||+++|++. .+|-.|.+|++|++|-|++|.++++
T Consensus       197 rRn~l~~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  197 RRNHLEDLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hhhhhhhCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence                4467888874 45888999999999 8999999999999999999999764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.20  E-value=4.8e-11  Score=91.00  Aligned_cols=113  Identities=18%  Similarity=0.331  Sum_probs=66.2

Q ss_pred             cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCcccc----------------
Q 045549           12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLIC----------------   74 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~----------------   74 (134)
                      .|+.|++++|.+..+|..+..+|+.|++++|+++.+ |.. ..+|++|++++|+++ .+|..+.                
T Consensus       242 ~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~L-P~~l~~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        242 TIQEMELSINRITELPERLPSALQSLDLFHNKISCL-PENLPEELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTAL  319 (754)
T ss_pred             cccEEECcCCccCcCChhHhCCCCEEECcCCccCcc-ccccCCCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccC
Confidence            567777777777767766656677777777777643 333 456777777777666 3343221                


Q ss_pred             ------CCCCccc----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           75 ------NLSTIEI----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        75 ------~l~~L~~----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                            .+..|..    ...+|..+  .++|+.|++++|.++ .+|..+.  ++|+.|++++|.++.
T Consensus       320 P~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~  381 (754)
T PRK15370        320 PETLPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN  381 (754)
T ss_pred             CccccccceeccccCCccccCChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC
Confidence                  1111111    11233322  246777777777776 5565442  467777777777764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.20  E-value=1.1e-12  Score=99.48  Aligned_cols=118  Identities=21%  Similarity=0.319  Sum_probs=96.3

Q ss_pred             cCCcccEEEcCCCccCC--CCccc-ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-
Q 045549            9 EVCRDIKIQFGKNSFDG--IKKLP-WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-   81 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~--~~~~~-~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-   81 (134)
                      .++.|+.|++.+|.+++  +|... +++|+.|++++|++..+....   +..|+.|++++|++. .+|..+.+|..|+. 
T Consensus       357 ~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  357 NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL  435 (1081)
T ss_pred             hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence            45688889999999987  67665 499999999999988654444   778999999999999 89999999988887 


Q ss_pred             ------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCc
Q 045549           82 ------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNK  128 (134)
Q Consensus        82 ------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  128 (134)
                            ....| ++..+++|+.+|++.|.+....-..-...++|++||++||.
T Consensus       436 ~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  436 RAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence                  34567 78889999999999999985433222333899999999996

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.18  E-value=2.4e-11  Score=77.63  Aligned_cols=107  Identities=23%  Similarity=0.277  Sum_probs=36.2

Q ss_pred             cCCcccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccccccC
Q 045549            9 EVCRDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPI   85 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~   85 (134)
                      +...++.|++++|.++.+...-  ..+++.|++++|.++.+..-. ++.|++|++++|+++ .+...+            
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~-~i~~~l------------   83 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRIS-SISEGL------------   83 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS----S-CHHH------------
T ss_pred             cccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCC-ccccch------------
Confidence            3446888999999998765432  378999999999998765444 899999999999998 332111            


Q ss_pred             CccCcCCCCCcEEEccCCccccCc-cccccCCCCCcEEEcCCCcccc
Q 045549           86 PETLSKGSNLRTLNFNGNELVGSV-PRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        86 ~~~~~~~~~L~~l~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                         ...+++|+.|++++|++...- -..+..+++|+.|++.+|.++.
T Consensus        84 ---~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   84 ---DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             ---HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             ---HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence               123577778888888776321 1346677778888888887754

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.17  E-value=4.2e-11  Score=63.78  Aligned_cols=61  Identities=39%  Similarity=0.651  Sum_probs=50.8

Q ss_pred             CCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcc
Q 045549           53 SNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI  129 (134)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  129 (134)
                      ++|++|++++|+++ .+|               +..|..+++|+.+++++|.++..-+..|.++++|+.+++++|+|
T Consensus         1 p~L~~L~l~~n~l~-~i~---------------~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIP---------------PDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EEC---------------TTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccC---------------HHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46888999999888 444               45778889999999999999855566899999999999999975

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.16  E-value=2.2e-10  Score=87.50  Aligned_cols=71  Identities=24%  Similarity=0.382  Sum_probs=42.2

Q ss_pred             CCccEEEcccCccccccCccccCCCCccc----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCc
Q 045549           53 SNMKVFLISNNRFTREIPCLICNLSTIEI----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNK  128 (134)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  128 (134)
                      .+|++|++++|+++ .+|.....+..|..    ...+|..   ..+|+.|++++|.++ .+|..   .++|+.|++++|.
T Consensus       342 ~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~  413 (788)
T PRK15387        342 SGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNR  413 (788)
T ss_pred             cccceEecCCCccC-CCCCCCcccceehhhccccccCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCc
Confidence            46888888888887 55654444444433    2233432   245677777777777 45543   2456666777766


Q ss_pred             ccc
Q 045549          129 IED  131 (134)
Q Consensus       129 l~~  131 (134)
                      +++
T Consensus       414 Lss  416 (788)
T PRK15387        414 LTS  416 (788)
T ss_pred             CCC
Confidence            654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.13  E-value=1.2e-12  Score=82.83  Aligned_cols=97  Identities=26%  Similarity=0.376  Sum_probs=77.3

Q ss_pred             cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc-------cccCCccCcCCCCCcEEEccC
Q 045549           32 KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWPIPETLSKGSNLRTLNFNG  102 (134)
Q Consensus        32 ~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~~~~~~~~~~L~~l~l~~  102 (134)
                      .++++|-++.|+++...|..  +.+|++|.+.+|.++ ..|.++..+.+|+.       ...+|.+||.++.|+.|++.+
T Consensus        33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence            78899999999999887776  999999999999999 99999998888887       567899999999999998888


Q ss_pred             Ccccc-CccccccCCCCCcEEEcCCCcc
Q 045549          103 NELVG-SVPRSLLNCENLQVVDLGNNKI  129 (134)
Q Consensus       103 n~l~~-~~p~~~~~l~~L~~L~l~~n~l  129 (134)
                      |.+.. .+|..|.++..|+.|++++|.+
T Consensus       112 nnl~e~~lpgnff~m~tlralyl~dndf  139 (264)
T KOG0617|consen  112 NNLNENSLPGNFFYMTTLRALYLGDNDF  139 (264)
T ss_pred             cccccccCCcchhHHHHHHHHHhcCCCc
Confidence            77742 2455555555555555555444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.12  E-value=1.2e-12  Score=91.89  Aligned_cols=119  Identities=21%  Similarity=0.263  Sum_probs=66.3

Q ss_pred             cccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc------
Q 045549           12 RDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI------   81 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------   81 (134)
                      .+..++..+|++..+|.+++  .++..+++.+|.++...+..  |+.|+++|...|-++ .+|+.++.+.+|..      
T Consensus       138 ~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N  216 (565)
T KOG0472|consen  138 DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN  216 (565)
T ss_pred             hhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence            34445555555555555432  44455555555555444433  445555555555444 44444444443322      


Q ss_pred             -----------------------cccCCccCc-CCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           82 -----------------------PWPIPETLS-KGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 -----------------------~~~~~~~~~-~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                                             ...+|.+.. ++.++..|++..|++. +.|+.++-+++|..||+++|.|++.
T Consensus       217 ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L  290 (565)
T KOG0472|consen  217 KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL  290 (565)
T ss_pred             ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC
Confidence                                   123344443 5667777777777777 6677777777777777777777654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.11  E-value=2.9e-10  Score=86.83  Aligned_cols=116  Identities=22%  Similarity=0.288  Sum_probs=82.4

Q ss_pred             CcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCcccc-CCCCccc----ccc
Q 045549           11 CRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLIC-NLSTIEI----PWP   84 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~----~~~   84 (134)
                      ++|+.|++++|.++.+|..+..+++.|++++|.++.+ |.. ...|+.|++++|+++ .+|..+. .+..|..    ...
T Consensus       220 ~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~L-P~~l~s~L~~L~Ls~N~L~-~LP~~l~~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        220 GNIKTLYANSNQLTSIPATLPDTIQEMELSINRITEL-PERLPSALQSLDLFHNKIS-CLPENLPEELRYLSVYDNSIRT  297 (754)
T ss_pred             cCCCEEECCCCccccCChhhhccccEEECcCCccCcC-ChhHhCCCCEEECcCCccC-ccccccCCCCcEEECCCCcccc
Confidence            4899999999999999988778999999999999864 444 668999999999998 6676553 3333332    112


Q ss_pred             CCccCc-------------------CCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           85 IPETLS-------------------KGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        85 ~~~~~~-------------------~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      +|..+.                   ..++|+.|++++|.++ .+|..+.  ++|+.|++++|+|+.
T Consensus       298 LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~  360 (754)
T PRK15370        298 LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITV  360 (754)
T ss_pred             CcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCCc
Confidence            222111                   1245677777777777 4565443  578888998888863

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=5.7e-12  Score=85.95  Aligned_cols=121  Identities=16%  Similarity=0.165  Sum_probs=93.3

Q ss_pred             CcccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCcc---ccCCCCccccc-
Q 045549           11 CRDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCL---ICNLSTIEIPW-   83 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~---~~~l~~L~~~~-   83 (134)
                      ..|+.+++++|.++.++..+  .+.++.|++++|.+.....-. +++|+.||+++|.++ .+..+   +++.+.|.... 
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhh
Confidence            47889999999999888876  499999999999988654322 899999999999987 44433   44444444421 


Q ss_pred             --cCCccCcCCCCCcEEEccCCccccCcc--ccccCCCCCcEEEcCCCcccccC
Q 045549           84 --PIPETLSKGSNLRTLNFNGNELVGSVP--RSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        84 --~~~~~~~~~~~L~~l~l~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                        +--.+++.+.+|..|++.+|+|. .+.  ..+++++.|+.+.+.+|.+.+.+
T Consensus       363 ~iE~LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  363 KIETLSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hHhhhhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCccccc
Confidence              22345677889999999999998 433  35899999999999999998753

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=4.2e-10  Score=71.93  Aligned_cols=100  Identities=22%  Similarity=0.330  Sum_probs=50.5

Q ss_pred             cCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCC---CCCCccEEEcccCccccccCccccCCCCcccccc
Q 045549            9 EVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLD---PSSNMKVFLISNNRFTREIPCLICNLSTIEIPWP   84 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~---~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~   84 (134)
                      .+.+|+.|++++|.++.++... .+.|+.|++++|+++.....   .+++|++|++++|++.. +..             
T Consensus        40 ~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~-l~~-------------  105 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISD-LNE-------------  105 (175)
T ss_dssp             T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---S-CCC-------------
T ss_pred             hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCC-hHH-------------
Confidence            4678999999999999876643 49999999999999986432   28899999999999973 211             


Q ss_pred             CCccCcCCCCCcEEEccCCccccCccc----cccCCCCCcEEEc
Q 045549           85 IPETLSKGSNLRTLNFNGNELVGSVPR----SLLNCENLQVVDL  124 (134)
Q Consensus        85 ~~~~~~~~~~L~~l~l~~n~l~~~~p~----~~~~l~~L~~L~l  124 (134)
                       -..+..+++|+.|++.+|.++. .+.    .+..+|+|+.||-
T Consensus       106 -l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  106 -LEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -CGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred             -hHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence             1245668999999999999984 343    4788999999884

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=1e-09  Score=58.40  Aligned_cols=52  Identities=27%  Similarity=0.340  Sum_probs=23.7

Q ss_pred             cccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccC
Q 045549           12 RDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNN   63 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n   63 (134)
                      +|+.|++++|.++.+|+..+   ++|++|++++|.++...+..   +++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            45555555555555444332   44444444444444333322   344444444444

...

>PLN03210 Resistant to P

Probab=98.91  E-value=1.6e-08  Score=81.01  Aligned_cols=113  Identities=16%  Similarity=0.219  Sum_probs=47.8

Q ss_pred             ccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc--------
Q 045549           13 DIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI--------   81 (134)
Q Consensus        13 L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------   81 (134)
                      |+.|.+.++.++.+|..+ ..+|..|++.+|.+.......  ++.|+.++++++..-..+|. +..+++|+.        
T Consensus       591 Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~  669 (1153)
T PLN03210        591 LRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSS  669 (1153)
T ss_pred             cEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCC
Confidence            444444444443344332 244555555555544322111  44555555554432223332 333333333        


Q ss_pred             cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCC
Q 045549           82 PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN  127 (134)
Q Consensus        82 ~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  127 (134)
                      ...+|..++.+++|+.|+++++.....+|..+ ++++|+.|++++|
T Consensus       670 L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        670 LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC  714 (1153)
T ss_pred             ccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence            22344455555555555555432222444433 3444444544444

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.82  E-value=3.3e-08  Score=79.21  Aligned_cols=126  Identities=16%  Similarity=0.185  Sum_probs=97.1

Q ss_pred             ccccccccCCcccEEEcCCCccC------C-CCccc---ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccC
Q 045549            2 LEEEVTQEVCRDIKIQFGKNSFD------G-IKKLP---WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIP   70 (134)
Q Consensus         2 ~~~~~~~~~~~L~~L~l~~n~l~------~-~~~~~---~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~   70 (134)
                      ++.+.|..+++|+.|.+..+...      . +|..+   ..+++.|.+.++.++...... +.+|+.|++.+|.+. .++
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccc
Confidence            34556889999999998665422      1 45543   267999999999887654444 789999999999998 677


Q ss_pred             ccccCCCCccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcc
Q 045549           71 CLICNLSTIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI  129 (134)
Q Consensus        71 ~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l  129 (134)
                      ..+..+.+|+.        ...+| .++.+++|+.|++++|.....+|..+.++++|+.|++++|..
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~  693 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN  693 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence            77777777776        23445 467789999999998765558899999999999999998743

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.79  E-value=3.7e-10  Score=86.10  Aligned_cols=123  Identities=23%  Similarity=0.275  Sum_probs=92.3

Q ss_pred             ccccCCcccEEEcCCCccCCCCcccc----------------------------cCCcEEEccCcccCCc-CCCC--CCC
Q 045549            6 VTQEVCRDIKIQFGKNSFDGIKKLPW----------------------------KNLEYLDFRSNLLQGL-FLDP--SSN   54 (134)
Q Consensus         6 ~~~~~~~L~~L~l~~n~l~~~~~~~~----------------------------~~L~~L~l~~n~l~~~-~~~~--l~~   54 (134)
                      +......|+.|++..|++..+|+.++                            +.|+.|.+.+|.++.. +|..  +..
T Consensus       305 ~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h  384 (1081)
T KOG0618|consen  305 FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH  384 (1081)
T ss_pred             cccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence            34467899999999999988776442                            2345556777777754 3333  788


Q ss_pred             ccEEEcccCccccccCccccCCCCccc-------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCC
Q 045549           55 MKVFLISNNRFTREIPCLICNLSTIEI-------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN  127 (134)
Q Consensus        55 l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  127 (134)
                      |++|++++|++...-...+.+|..|..       ...+|.++..+..|+.|...+|.+. ..| .+..++.|+++|++.|
T Consensus       385 LKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N  462 (1081)
T KOG0618|consen  385 LKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCN  462 (1081)
T ss_pred             eeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccc
Confidence            999999999988444455667766665       4467777888888888888888888 778 7888999999999999


Q ss_pred             ccc
Q 045549          128 KIE  130 (134)
Q Consensus       128 ~l~  130 (134)
                      +++
T Consensus       463 ~L~  465 (1081)
T KOG0618|consen  463 NLS  465 (1081)
T ss_pred             hhh
Confidence            875

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.78  E-value=2.9e-10  Score=79.83  Aligned_cols=124  Identities=19%  Similarity=0.255  Sum_probs=87.3

Q ss_pred             cccccCC-cccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccE-EEcccCccccccCccccCC
Q 045549            5 EVTQEVC-RDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKV-FLISNNRFTREIPCLICNL   76 (134)
Q Consensus         5 ~~~~~~~-~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~-L~l~~n~l~~~~~~~~~~l   76 (134)
                      ++|.++| ..+.+.|..|.|+.+|+..|   .+|++|+++.|.++.+.|..   +.++.. ++.++|+|+......|+.+
T Consensus        60 eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL  139 (498)
T KOG4237|consen   60 EVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL  139 (498)
T ss_pred             cCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence            4566665 45567888888888888765   77888888888888777665   444333 3445588885555667777


Q ss_pred             CCccc--------cccCCccCcCCCCCcEEEccCCccccCccc-cccCCCCCcEEEcCCCcc
Q 045549           77 STIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPR-SLLNCENLQVVDLGNNKI  129 (134)
Q Consensus        77 ~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l  129 (134)
                      ..++.        .-..++.+..++++..|.+-.|.+. .++. .|..+.+++.+++..|.+
T Consensus       140 ~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  140 SSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             HHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcc
Confidence            77766        2234556777888888888888887 5554 678888888888877763

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.75  E-value=8.2e-09  Score=73.84  Aligned_cols=122  Identities=26%  Similarity=0.355  Sum_probs=67.8

Q ss_pred             cCCcccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc---
Q 045549            9 EVCRDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      .+++|+.|++++|++..++...  .+.++.|++++|+++.+.+..  ...|+++.+++|.+. ..+..+.++..+..   
T Consensus       161 ~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l  239 (394)
T COG4886         161 NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLEL  239 (394)
T ss_pred             ccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhccccccccc
Confidence            3444444555555554444432  244455555555544433321  333555555555332 23333333333222   


Q ss_pred             ----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549           82 ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        82 ----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                          ...++..++.+.+++.+++++|.++ .++. ++.+.+++.+++++|.+....
T Consensus       240 ~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         240 SNNKLEDLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             CCceeeeccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccc
Confidence                1122566777788999999999888 5554 888889999999998876553

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.75  E-value=1.7e-09  Score=74.95  Aligned_cols=123  Identities=19%  Similarity=0.307  Sum_probs=59.4

Q ss_pred             cCCcccEEEcCCCccCC-CCccc--cc---CCcEEEccCcccCCc----CCC---CC-CCccEEEcccCccccc----cC
Q 045549            9 EVCRDIKIQFGKNSFDG-IKKLP--WK---NLEYLDFRSNLLQGL----FLD---PS-SNMKVFLISNNRFTRE----IP   70 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~-~~~~~--~~---~L~~L~l~~n~l~~~----~~~---~l-~~l~~L~l~~n~l~~~----~~   70 (134)
                      .+++|+.|++++|.+.. .+..+  ..   +++.|++++|.+++.    ...   .+ +.|+.|++++|.+++.    ++
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            45677777777776654 22211  12   267777777766521    000   13 5666667766666521    22


Q ss_pred             ccccCCCCccc----c--------ccCCccCcCCCCCcEEEccCCccccC----ccccccCCCCCcEEEcCCCcccc
Q 045549           71 CLICNLSTIEI----P--------WPIPETLSKGSNLRTLNFNGNELVGS----VPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        71 ~~~~~l~~L~~----~--------~~~~~~~~~~~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      ..+..+.+|+.    .        ..++..+..+++|+.+++++|.+.+.    +...+..+++|+.|++++|.+++
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            22332222322    0        01122233345666666666655422    12234455566666666665553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.60  E-value=7.1e-08  Score=47.79  Aligned_cols=39  Identities=38%  Similarity=0.656  Sum_probs=30.0

Q ss_pred             CCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           93 SNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        93 ~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                      ++|+.|++++|+|+ .+|..++++++|+.|++++|++++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence            46788888888888 6777788888888888888888754

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.56  E-value=3.2e-08  Score=70.84  Aligned_cols=119  Identities=29%  Similarity=0.362  Sum_probs=71.2

Q ss_pred             cccEEEcCCCccCCCCcc--cccCCcEEEccCcccCCcCCC--CCCCccEEEcccCccccccCccccCCCCccc----c-
Q 045549           12 RDIKIQFGKNSFDGIKKL--PWKNLEYLDFRSNLLQGLFLD--PSSNMKVFLISNNRFTREIPCLICNLSTIEI----P-   82 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~~--~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----~-   82 (134)
                      +|+.|++++|.+..+|..  -.++++.|++++|+++...+.  ..+.++.|++++|++. .+|..+.....|..    . 
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            555566666666555322  235566666666666554444  2556666666666666 55544332222322    1 


Q ss_pred             --ccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           83 --WPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        83 --~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                        ...+..++.+..+..+.+.+|++. ..+..++.+.+++.|++++|.++..
T Consensus       220 ~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         220 SIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             cceecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc
Confidence              234455666677777777777777 4467788888888888888887653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.54  E-value=7.9e-09  Score=72.80  Aligned_cols=116  Identities=15%  Similarity=0.141  Sum_probs=95.6

Q ss_pred             EEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc--------cc
Q 045549           15 KIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--------PW   83 (134)
Q Consensus        15 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~   83 (134)
                      .++.++-.+++||..+.+....+.+..|+++.+.+..   +.+|+.|||+.|.|+.+-|.+|..+..+..        ..
T Consensus        50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            3566777787899998899999999999999876665   889999999999999888999988877655        12


Q ss_pred             cCC-ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549           84 PIP-ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        84 ~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                      .+| ..|+.+.+++.|.+.-|++.-...+.|..++++..|.+-+|.+.
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q  177 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ  177 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence            233 46888888898988888888677778999999988888888764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.49  E-value=3.4e-08  Score=68.46  Aligned_cols=38  Identities=29%  Similarity=0.384  Sum_probs=17.1

Q ss_pred             CCCcEEEccCCcccc----CccccccCCCCCcEEEcCCCccc
Q 045549           93 SNLRTLNFNGNELVG----SVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        93 ~~L~~l~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                      +.|+.+++++|.++.    .+...+..+++|+.+++++|.++
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            344555555554431    11223333445555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.45  E-value=8.8e-09  Score=75.46  Aligned_cols=97  Identities=33%  Similarity=0.415  Sum_probs=64.7

Q ss_pred             cCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc-------cccCCccCcCCCCCcEEEccCC
Q 045549           32 KNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWPIPETLSKGSNLRTLNFNGN  103 (134)
Q Consensus        32 ~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~~~~~~~~~~L~~l~l~~n  103 (134)
                      ..+++++++.|+++...... .--|++|.+++|+++ .+|..++.+.+|..       ...+|..++.+.+|+.+.+..|
T Consensus       121 ~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn  199 (722)
T KOG0532|consen  121 EALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN  199 (722)
T ss_pred             hHHHHhhhccchhhcCChhhhcCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh
Confidence            45666677777766543333 445777777777777 67777665555544       2345666777777777777777


Q ss_pred             ccccCccccccCCCCCcEEEcCCCcccc
Q 045549          104 ELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus       104 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      ++. .+|..++.++ |..||++.|+++-
T Consensus       200 ~l~-~lp~El~~Lp-Li~lDfScNkis~  225 (722)
T KOG0532|consen  200 HLE-DLPEELCSLP-LIRLDFSCNKISY  225 (722)
T ss_pred             hhh-hCCHHHhCCc-eeeeecccCceee
Confidence            777 6677777554 7788888887753

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.40  E-value=2.7e-09  Score=80.23  Aligned_cols=102  Identities=20%  Similarity=0.209  Sum_probs=55.0

Q ss_pred             CCcccEEEcCCCccCCCCcccc-cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccccccCC
Q 045549           10 VCRDIKIQFGKNSFDGIKKLPW-KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIP   86 (134)
Q Consensus        10 ~~~L~~L~l~~n~l~~~~~~~~-~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~   86 (134)
                      ++.++.|+|++|.+++++...+ +.|+.|++++|.+....-..  -..|+.|.+++|.++                  .-
T Consensus       186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~------------------tL  247 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALT------------------TL  247 (1096)
T ss_pred             HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHH------------------hh
Confidence            3444555555555544442221 45555555555544322222  112555555555444                  12


Q ss_pred             ccCcCCCCCcEEEccCCccccC-ccccccCCCCCcEEEcCCCcc
Q 045549           87 ETLSKGSNLRTLNFNGNELVGS-VPRSLLNCENLQVVDLGNNKI  129 (134)
Q Consensus        87 ~~~~~~~~L~~l~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l  129 (134)
                      ..+.++.+|+.||+++|-+.+- --..+..+..|+.|+++||.+
T Consensus       248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            2456778888888888877632 122456667788888888876

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.37  E-value=6.7e-09  Score=63.54  Aligned_cols=99  Identities=19%  Similarity=0.228  Sum_probs=61.8

Q ss_pred             cccEEEcCCCccCCCCcccc-----cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccccc
Q 045549           12 RDIKIQFGKNSFDGIKKLPW-----KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPW   83 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~   83 (134)
                      .+..++|+.|++-.+++.++     ..++.+++++|.+++..+..   .+.++.+.+.+|.++ .+              
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dv--------------   92 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DV--------------   92 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hc--------------
Confidence            45567777777766666553     66777788888877655544   456777788888777 33              


Q ss_pred             cCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCc
Q 045549           84 PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNK  128 (134)
Q Consensus        84 ~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  128 (134)
                        |.++..++.|+.++++.|.+. ..|..+..+.++..|+..+|.
T Consensus        93 --PeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen   93 --PEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             --hHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence              444455555566666666555 445555555555555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.32  E-value=1.9e-06  Score=56.04  Aligned_cols=99  Identities=20%  Similarity=0.278  Sum_probs=64.2

Q ss_pred             cccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccccccCCc
Q 045549           12 RDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPE   87 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~   87 (134)
                      +...+++++|++..++... .+.|.+|.+++|+++.+.|..   ++.+..|.+.+|.+... .             . -+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-~-------------d-l~  107 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-G-------------D-LD  107 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh-h-------------h-cc
Confidence            4455666776665544433 366777777777777666655   56677777777766511 1             0 12


Q ss_pred             cCcCCCCCcEEEccCCccccCccc----cccCCCCCcEEEcCC
Q 045549           88 TLSKGSNLRTLNFNGNELVGSVPR----SLLNCENLQVVDLGN  126 (134)
Q Consensus        88 ~~~~~~~L~~l~l~~n~l~~~~p~----~~~~l~~L~~L~l~~  126 (134)
                      .+..|++|+.|.+-+|.++ ..+.    .+..+++|++||.++
T Consensus       108 pLa~~p~L~~Ltll~Npv~-~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  108 PLASCPKLEYLTLLGNPVE-HKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hhccCCccceeeecCCchh-cccCceeEEEEecCcceEeehhh
Confidence            3456788888888888887 3332    477888999998764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.28  E-value=2.9e-07  Score=66.50  Aligned_cols=104  Identities=22%  Similarity=0.253  Sum_probs=61.9

Q ss_pred             ccCCcccEEEcCCCccCCCCc--ccccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCcccccc
Q 045549            8 QEVCRDIKIQFGKNSFDGIKK--LPWKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPWP   84 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~   84 (134)
                      ..+.+++.|++.+|.+.++..  ..+++|++|++++|.++.+.+-. ++.|+.|++.+|.++ .                
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~-~----------------  154 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLIS-D----------------  154 (414)
T ss_pred             ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcch-h----------------
Confidence            345666667777777766544  23466777777777766655444 566777777777666 1                


Q ss_pred             CCccCcCCCCCcEEEccCCccccCcccc-ccCCCCCcEEEcCCCccc
Q 045549           85 IPETLSKGSNLRTLNFNGNELVGSVPRS-LLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        85 ~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~  130 (134)
                       ...+..+..|+.+++++|.++ .+... ..++.+++.+++.+|.+.
T Consensus       155 -~~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  155 -ISGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             -ccCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchh
Confidence             123334566666777777666 22221 355556666666666553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.18  E-value=5.1e-08  Score=73.59  Aligned_cols=102  Identities=22%  Similarity=0.246  Sum_probs=78.9

Q ss_pred             cccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccccccCCcc
Q 045549           12 RDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPET   88 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~   88 (134)
                      .|...+.++|.+..++..+  .+.++.|+++.|++++...-. ++.|++||+++|++. .+|..               .
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~-~vp~l---------------~  228 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLR-HVPQL---------------S  228 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhc-ccccc---------------c
Confidence            5667788888887777765  388999999999988765222 889999999999988 55522               2


Q ss_pred             CcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           89 LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        89 ~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                      ...+. |..|.+.+|.++ .+ ..+.++.+|+.||++.|-|.+.
T Consensus       229 ~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  229 MVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEH  269 (1096)
T ss_pred             hhhhh-heeeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcc
Confidence            33444 899999999988 43 3588999999999999988653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.15  E-value=5e-07  Score=62.27  Aligned_cols=96  Identities=23%  Similarity=0.375  Sum_probs=52.7

Q ss_pred             ccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc-------cccCCccCcCCCCCcEEEcc
Q 045549           31 WKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWPIPETLSKGSNLRTLNFN  101 (134)
Q Consensus        31 ~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~~~~~~~~~~L~~l~l~  101 (134)
                      |..++.+++++|.++.+.-+-  .+.++.|+++.|++. .+.. +..+.+|..       ...+-.+-..+-++..|.++
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            467888899999887643332  778999999999887 2221 333333332       11111122233344445555


Q ss_pred             CCccccCccccccCCCCCcEEEcCCCccc
Q 045549          102 GNELVGSVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus       102 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                      .|.+. .+ +.++.+=+|..||+++|+|.
T Consensus       361 ~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  361 QNKIE-TL-SGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             hhhHh-hh-hhhHhhhhheeccccccchh
Confidence            55444 21 23444555666777777663

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.11  E-value=2.7e-06  Score=42.09  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=14.6

Q ss_pred             cccEEEcCCCccCCCCccc--ccCCcEEEccCcccC
Q 045549           12 RDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQ   45 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~   45 (134)
                      +|++|++++|+++++|..+  +++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            4455555555555444422  244444444444443

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=2e-07  Score=66.49  Aligned_cols=126  Identities=15%  Similarity=0.234  Sum_probs=77.5

Q ss_pred             cccccCCcccEEEcCCCccCCCCcc---c--ccCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccC-cccc
Q 045549            5 EVTQEVCRDIKIQFGKNSFDGIKKL---P--WKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIP-CLIC   74 (134)
Q Consensus         5 ~~~~~~~~L~~L~l~~n~l~~~~~~---~--~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~-~~~~   74 (134)
                      ++...+++++.|+++.|-+......   .  .++|+.|.++.|++.......    ++.++.|.++.|+++..-- ....
T Consensus       140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~  219 (505)
T KOG3207|consen  140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL  219 (505)
T ss_pred             hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence            3556788888888888877652221   1  388888888888876543333    6778888888888763211 1122


Q ss_pred             CCCCccc----cc--cCCc--cCcCCCCCcEEEccCCccccCcc--ccccCCCCCcEEEcCCCcccc
Q 045549           75 NLSTIEI----PW--PIPE--TLSKGSNLRTLNFNGNELVGSVP--RSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        75 ~l~~L~~----~~--~~~~--~~~~~~~L~~l~l~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      .++++..    ..  ..-.  ....+..|+.|++++|.+- ..+  ...+.++.|..|.++.+.+++
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~s  285 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIAS  285 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcch
Confidence            2333333    11  1111  1223466778888888776 444  346777888888888877764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.08  E-value=2.6e-06  Score=66.71  Aligned_cols=117  Identities=21%  Similarity=0.222  Sum_probs=81.5

Q ss_pred             CcccEEEcCCCccCCCCccc-ccCCcEEEccCcc--cCCcCCC---CCCCccEEEcccCccccccCccccCCCCccc---
Q 045549           11 CRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNL--LQGLFLD---PSSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~--l~~~~~~---~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      ...+...+.+|.+..++... .+.+++|-+..|.  +......   .++.|++||+++|.--+..|..++.+.+|++   
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            35566666666665555443 3668888888875  3332222   2888999999887655588888888888877   


Q ss_pred             ----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCC
Q 045549           82 ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN  127 (134)
Q Consensus        82 ----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  127 (134)
                          ...+|..++.+..|.+|++..+.....+|.....+.+|++|.+...
T Consensus       603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence                4467888888888888888877655455666667888888777543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.99  E-value=2.5e-05  Score=56.23  Aligned_cols=113  Identities=15%  Similarity=0.210  Sum_probs=64.9

Q ss_pred             cCCcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC-CCCccEEEcccC-ccccccCccccCCCCccc-----
Q 045549            9 EVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNN-RFTREIPCLICNLSTIEI-----   81 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~-----   81 (134)
                      .+.+++.|++++|.++.+|. +..+|+.|.++++.--...|.. ..+|++|++++| .+. .+|..+..|. +..     
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~-LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-sLP~sLe~L~-L~~n~~~~  126 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV-LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-GLPESVRSLE-IKGSATDS  126 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC-CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc-ccccccceEE-eCCCCCcc
Confidence            35788889999988888873 3467888888875432334433 456888888877 454 5665554332 101     


Q ss_pred             cccCCccCcC------------------CCCCcEEEccCCccccCccccccCCCCCcEEEcCCC
Q 045549           82 PWPIPETLSK------------------GSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN  127 (134)
Q Consensus        82 ~~~~~~~~~~------------------~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  127 (134)
                      ...+|..+..                  .++|+.|+++++... .+|..+.  .+|+.|+++.+
T Consensus       127 L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        127 IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            1222222211                  146777877776654 3343222  36677776554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=1.8e-06  Score=61.85  Aligned_cols=41  Identities=17%  Similarity=0.179  Sum_probs=25.9

Q ss_pred             ccccCCcccEEEcCCCccCC-CCc---ccccCCcEEEccCcccCC
Q 045549            6 VTQEVCRDIKIQFGKNSFDG-IKK---LPWKNLEYLDFRSNLLQG   46 (134)
Q Consensus         6 ~~~~~~~L~~L~l~~n~l~~-~~~---~~~~~L~~L~l~~n~l~~   46 (134)
                      +.+.+|+|+.|+++.|.+.- ...   ...++++.|.++.|.++.
T Consensus       167 i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~  211 (505)
T KOG3207|consen  167 IAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW  211 (505)
T ss_pred             HHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCH
Confidence            34567888888888887753 111   123667777777776653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.91  E-value=2.4e-07  Score=56.82  Aligned_cols=84  Identities=14%  Similarity=0.144  Sum_probs=60.9

Q ss_pred             CCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCcccccc
Q 045549           10 VCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEIPWP   84 (134)
Q Consensus        10 ~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~   84 (134)
                      ...|+..++++|.++++|+.+   ++.++.+++++|.++...-..  ++.|+.+.++.|.+. ..|+-            
T Consensus        52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~-~~p~v------------  118 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN-AEPRV------------  118 (177)
T ss_pred             CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc-cchHH------------
Confidence            456778899999999999876   378999999999998754333  899999999999988 33333            


Q ss_pred             CCccCcCCCCCcEEEccCCccccCccc
Q 045549           85 IPETLSKGSNLRTLNFNGNELVGSVPR  111 (134)
Q Consensus        85 ~~~~~~~~~~L~~l~l~~n~l~~~~p~  111 (134)
                          +..+.++..|+..+|.+. .+|-
T Consensus       119 ----i~~L~~l~~Lds~~na~~-eid~  140 (177)
T KOG4579|consen  119 ----IAPLIKLDMLDSPENARA-EIDV  140 (177)
T ss_pred             ----HHHHHhHHHhcCCCCccc-cCcH
Confidence                333455555555555555 4443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.89  E-value=3.4e-06  Score=61.02  Aligned_cols=124  Identities=23%  Similarity=0.285  Sum_probs=81.8

Q ss_pred             cccCCcccEEEcCCCccCCCCcc-cccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc---
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKL-PWKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      ...+++|++|++++|.++.+... ....|+.|++++|.++.+.-.. +..++.+++++|++...-+.....+..+..   
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l  193 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDL  193 (414)
T ss_pred             hhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhc
Confidence            45789999999999999985543 3466999999999998764444 889999999999988444410233333332   


Q ss_pred             -----------------------cccCCc--cCcCCCC--CcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           82 -----------------------PWPIPE--TLSKGSN--LRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 -----------------------~~~~~~--~~~~~~~--L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                                             ...+..  .+..+..  |+.+++++|.+. ..+..+..+..+..+++.+|++..
T Consensus       194 ~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  194 GGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             cCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccc
Confidence                                   000100  1111122  667777777777 444566777778888888777654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.78  E-value=5.3e-06  Score=57.85  Aligned_cols=122  Identities=21%  Similarity=0.271  Sum_probs=68.9

Q ss_pred             cCCcccEEEcCCCccCC--CCccc-----ccCCcEEEccCcccCCcCC----------------CCCCCccEEEcccCcc
Q 045549            9 EVCRDIKIQFGKNSFDG--IKKLP-----WKNLEYLDFRSNLLQGLFL----------------DPSSNMKVFLISNNRF   65 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~--~~~~~-----~~~L~~L~l~~n~l~~~~~----------------~~l~~l~~L~l~~n~l   65 (134)
                      ..+.|+.|+||+|.+..  ++..-     +..|+.|.+.+|.+.....                ..-+.|++++..+|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            45678888888888854  33211     2667778888886652211                0145688888888887


Q ss_pred             ccccCcc----ccCCCCccc-----cccCCc-------cCcCCCCCcEEEccCCccccC----ccccccCCCCCcEEEcC
Q 045549           66 TREIPCL----ICNLSTIEI-----PWPIPE-------TLSKGSNLRTLNFNGNELVGS----VPRSLLNCENLQVVDLG  125 (134)
Q Consensus        66 ~~~~~~~----~~~l~~L~~-----~~~~~~-------~~~~~~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~l~  125 (134)
                      ...-...    +...+.|..     .+.-|+       .+..++.|+.|++..|.|+..    +...+..+++|+.++++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            6333322    223333332     112222       345667777777777766521    22345556667777777


Q ss_pred             CCccc
Q 045549          126 NNKIE  130 (134)
Q Consensus       126 ~n~l~  130 (134)
                      .+.++
T Consensus       250 dcll~  254 (382)
T KOG1909|consen  250 DCLLE  254 (382)
T ss_pred             ccccc
Confidence            66654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.62  E-value=0.00017  Score=47.20  Aligned_cols=101  Identities=24%  Similarity=0.307  Sum_probs=70.4

Q ss_pred             cEEEcCCCccCCCCc-ccc-cCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccccccCCccCc
Q 045549           14 IKIQFGKNSFDGIKK-LPW-KNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLS   90 (134)
Q Consensus        14 ~~L~l~~n~l~~~~~-~~~-~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~   90 (134)
                      +.+++.+..+..+-. ..+ .+...+++++|.+....--. ++.|.+|.+++|+++..-|                ..-.
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p----------------~L~~   85 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDP----------------DLDT   85 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeecc----------------chhh
Confidence            345555555443222 222 67888999999987643333 8999999999999983322                2222


Q ss_pred             CCCCCcEEEccCCccccCccc--cccCCCCCcEEEcCCCcccc
Q 045549           91 KGSNLRTLNFNGNELVGSVPR--SLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        91 ~~~~L~~l~l~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~  131 (134)
                      -++.|..|.+.+|.+. .+.+  -+..+++|+.|.+-+|.++.
T Consensus        86 ~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen   86 FLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             hccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhc
Confidence            3477889999999998 4433  47888999999999998764

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.62  E-value=2.3e-05  Score=60.15  Aligned_cols=119  Identities=13%  Similarity=0.056  Sum_probs=79.3

Q ss_pred             CcccEEEcCCCccCC--CCccc---ccCCcEEEccCcccCCcC----CCCCCCccEEEcccCccccccCccccCCCCccc
Q 045549           11 CRDIKIQFGKNSFDG--IKKLP---WKNLEYLDFRSNLLQGLF----LDPSSNMKVFLISNNRFTREIPCLICNLSTIEI   81 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~--~~~~~---~~~L~~L~l~~n~l~~~~----~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~   81 (134)
                      .+|+.|++++...-.  =+..+   +|+|+.|.+++-.+....    -..+++|..||+++++++..  ..+..+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            477888888744321  11111   399999999997765432    22388999999999998844  56677777777


Q ss_pred             -----ccc----CCccCcCCCCCcEEEccCCccccCc------cccccCCCCCcEEEcCCCcccc
Q 045549           82 -----PWP----IPETLSKGSNLRTLNFNGNELVGSV------PRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 -----~~~----~~~~~~~~~~L~~l~l~~n~l~~~~------p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                           ...    .-..+..+++|+.||++........      -+.-..++.|+.||.+++.++.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence                 111    1113556899999999976554211      1233458899999999887754

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.60  E-value=3.4e-05  Score=60.62  Aligned_cols=114  Identities=19%  Similarity=0.205  Sum_probs=70.5

Q ss_pred             CCcccEEEcCCCc--cCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc
Q 045549           10 VCRDIKIQFGKNS--FDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI   81 (134)
Q Consensus        10 ~~~L~~L~l~~n~--l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~   81 (134)
                      .+.++.|-+.+|.  +..++..++   +.|.+|++++|.--+..|..   +.+||+|+++++.++ .+|..+.+++.|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            3457777777665  444555432   77777888877655556655   777888888888877 78877777776665


Q ss_pred             --------cccCCccCcCCCCCcEEEccCCcccc--CccccccCCCCCcEEEc
Q 045549           82 --------PWPIPETLSKGSNLRTLNFNGNELVG--SVPRSLLNCENLQVVDL  124 (134)
Q Consensus        82 --------~~~~~~~~~~~~~L~~l~l~~n~l~~--~~p~~~~~l~~L~~L~l  124 (134)
                              ...++.....+.+|+.|.+.......  ..-..+.++.+|+.+..
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence                    11334455557888888877655321  11223455555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.59  E-value=8.1e-05  Score=50.91  Aligned_cols=58  Identities=19%  Similarity=0.233  Sum_probs=37.8

Q ss_pred             cCCcccEEEcCCCccCC-CCccc------ccCCcEEEccCcccCCcCCCC----------------CCCccEEEcccCcc
Q 045549            9 EVCRDIKIQFGKNSFDG-IKKLP------WKNLEYLDFRSNLLQGLFLDP----------------SSNMKVFLISNNRF   65 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~-~~~~~------~~~L~~L~l~~n~l~~~~~~~----------------l~~l~~L~l~~n~l   65 (134)
                      .+|.++.+++++|.+.. .|..+      ...+..|.+++|.+..+....                -+.|++++...|++
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            46778888888888765 55433      166777788887655332111                45678888888877


Q ss_pred             c
Q 045549           66 T   66 (134)
Q Consensus        66 ~   66 (134)
                      .
T Consensus       170 e  170 (388)
T COG5238         170 E  170 (388)
T ss_pred             c
Confidence            6

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.57  E-value=6.8e-05  Score=51.86  Aligned_cols=125  Identities=19%  Similarity=0.216  Sum_probs=73.6

Q ss_pred             cccCCcccEEEcCCCccCC-CCcc--cccCCcEEEccCcccCCcCCCC----CCCccEEEcccCcccc---------ccC
Q 045549            7 TQEVCRDIKIQFGKNSFDG-IKKL--PWKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTR---------EIP   70 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~-~~~~--~~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~---------~~~   70 (134)
                      ..++|.|+.|+++.|.+.. +...  ...+++.|-+.+..+.......    ++.++.++++.|.+..         .+.
T Consensus        93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s  172 (418)
T KOG2982|consen   93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS  172 (418)
T ss_pred             HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccc
Confidence            3578888888888888875 3332  2377888888877666432222    5666777777764321         111


Q ss_pred             ccccCCCCccc------------------------cccC-----CccCcCCCCCcEEEccCCccccCcc--ccccCCCCC
Q 045549           71 CLICNLSTIEI------------------------PWPI-----PETLSKGSNLRTLNFNGNELVGSVP--RSLLNCENL  119 (134)
Q Consensus        71 ~~~~~l~~L~~------------------------~~~~-----~~~~~~~~~L~~l~l~~n~l~~~~p--~~~~~l~~L  119 (134)
                      .....++.+.-                        .+.+     ...+..++.+..|+++.|++. ...  +.+.+++++
T Consensus       173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~id-swasvD~Ln~f~~l  251 (418)
T KOG2982|consen  173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNID-SWASVDALNGFPQL  251 (418)
T ss_pred             hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccc-cHHHHHHHcCCchh
Confidence            11111111111                        0111     123445566777888888876 432  467888888


Q ss_pred             cEEEcCCCccccc
Q 045549          120 QVVDLGNNKIEDI  132 (134)
Q Consensus       120 ~~L~l~~n~l~~~  132 (134)
                      .-|.+.+|.+.+.
T Consensus       252 ~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  252 VDLRVSENPLSDP  264 (418)
T ss_pred             heeeccCCccccc
Confidence            8888888887654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.14  E-value=0.00036  Score=49.00  Aligned_cols=121  Identities=14%  Similarity=0.229  Sum_probs=71.2

Q ss_pred             cCCcccEEEcCCCccCCCCcccc-------cCCcEEEccCcccCCcCCCC-------CCCccEEEcccCcccc----ccC
Q 045549            9 EVCRDIKIQFGKNSFDGIKKLPW-------KNLEYLDFRSNLLQGLFLDP-------SSNMKVFLISNNRFTR----EIP   70 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~~~~~~~-------~~L~~L~l~~n~l~~~~~~~-------l~~l~~L~l~~n~l~~----~~~   70 (134)
                      +-+.|+++....|.+..-++..+       +.++.+.+..|.+....-..       ++.|++||++.|-++.    .+.
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            34566677777666654333221       56677777777654221100       6778888888887752    233


Q ss_pred             ccccCCCCccc------------cccCCcc-CcCCCCCcEEEccCCccccC----ccccccCCCCCcEEEcCCCcc
Q 045549           71 CLICNLSTIEI------------PWPIPET-LSKGSNLRTLNFNGNELVGS----VPRSLLNCENLQVVDLGNNKI  129 (134)
Q Consensus        71 ~~~~~l~~L~~------------~~~~~~~-~~~~~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l  129 (134)
                      ..++.|++|+.            ...+-+. -...++|+.+.+.+|.++..    +..++...+.|..|++++|++
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            44455555444            0011111 12357888889999888732    223456678899999999988

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.11  E-value=0.00031  Score=29.20  Aligned_cols=19  Identities=26%  Similarity=0.454  Sum_probs=11.2

Q ss_pred             ccEEEcccCccccccCcccc
Q 045549           55 MKVFLISNNRFTREIPCLIC   74 (134)
Q Consensus        55 l~~L~l~~n~l~~~~~~~~~   74 (134)
                      |++||+++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            566666666666 5554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=2.6e-05  Score=53.42  Aligned_cols=99  Identities=23%  Similarity=0.213  Sum_probs=61.8

Q ss_pred             CCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccccccCCc
Q 045549           10 VCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPE   87 (134)
Q Consensus        10 ~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~   87 (134)
                      +.+++.|++=+|.+++|.-.. ++.+++|.++-|+++.+.|-. ++.|+.|+|+.|.|. .+...              .
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~-sldEL--------------~   82 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIE-SLDEL--------------E   82 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccc-cHHHH--------------H
Confidence            445666777777666533221 377788888888877765555 777788888777776 21110              1


Q ss_pred             cCcCCCCCcEEEccCCccccCccc-----cccCCCCCcEEE
Q 045549           88 TLSKGSNLRTLNFNGNELVGSVPR-----SLLNCENLQVVD  123 (134)
Q Consensus        88 ~~~~~~~L~~l~l~~n~l~~~~p~-----~~~~l~~L~~L~  123 (134)
                      -+.++++|+.|-+..|-.+|.-+.     .+..+++|+.||
T Consensus        83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            234567777777777777765432     355677777665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.84  E-value=0.00074  Score=45.60  Aligned_cols=32  Identities=28%  Similarity=0.228  Sum_probs=15.9

Q ss_pred             cCCcEEEccCcccCCcCCCC-CCCccEEEcccC
Q 045549           32 KNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNN   63 (134)
Q Consensus        32 ~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n   63 (134)
                      ..++.+++.+..++...... ++.|+.|+++.|
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDN   75 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhcccCC
Confidence            44555555555544332222 555666666666

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.70  E-value=0.00095  Score=27.70  Aligned_cols=22  Identities=45%  Similarity=0.724  Sum_probs=16.5

Q ss_pred             CCcEEEccCCccccCccccccCC
Q 045549           94 NLRTLNFNGNELVGSVPRSLLNC  116 (134)
Q Consensus        94 ~L~~l~l~~n~l~~~~p~~~~~l  116 (134)
                      +|+.|++++|+++ .+|+.|+++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4788899999888 778776653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.58  E-value=0.0014  Score=25.39  Aligned_cols=15  Identities=7%  Similarity=0.217  Sum_probs=7.1

Q ss_pred             cccEEEcCCCccCCC
Q 045549           12 RDIKIQFGKNSFDGI   26 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~   26 (134)
                      +|+.|++++|.++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            456666666665544

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.57  E-value=0.0013  Score=44.38  Aligned_cols=101  Identities=18%  Similarity=0.261  Sum_probs=57.8

Q ss_pred             ccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcc--cCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc
Q 045549            8 QEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNL--LQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI   81 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~--l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~   81 (134)
                      ..+..++.+.+.+..++.+.... .++|+.|.++.|.  ..+-....   .++|+++.+++|++. . ...+.       
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~-------  110 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLR-------  110 (260)
T ss_pred             ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccc-------
Confidence            34556666666666666533332 2788999998883  33322222   688999999999877 2 22211       


Q ss_pred             cccCCccCcCCCCCcEEEccCCccccCcc----ccccCCCCCcEEEc
Q 045549           82 PWPIPETLSKGSNLRTLNFNGNELVGSVP----RSLLNCENLQVVDL  124 (134)
Q Consensus        82 ~~~~~~~~~~~~~L~~l~l~~n~l~~~~p----~~~~~l~~L~~L~l  124 (134)
                            .+..+.+|..|++.++..++ +-    ..|.-+++|.+|+-
T Consensus       111 ------pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  111 ------PLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             ------hhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccc
Confidence                  22334556666666665543 21    13555666666553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=3.9e-05  Score=52.57  Aligned_cols=82  Identities=20%  Similarity=0.203  Sum_probs=60.3

Q ss_pred             cCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccccCcc
Q 045549           32 KNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVP  110 (134)
Q Consensus        32 ~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p  110 (134)
                      .+.+.|+..++.++.+.-.. |+.|++|.|+-|.++.                  -..+.+|+.|+.|+|..|.|. .+.
T Consensus        19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIss------------------L~pl~rCtrLkElYLRkN~I~-sld   79 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISS------------------LAPLQRCTRLKELYLRKNCIE-SLD   79 (388)
T ss_pred             HHhhhhcccCCCccHHHHHHhcccceeEEeecccccc------------------chhHHHHHHHHHHHHHhcccc-cHH
Confidence            45677788888777653333 8889999999988872                  224667888888999888887 443


Q ss_pred             c--cccCCCCCcEEEcCCCccccc
Q 045549          111 R--SLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus       111 ~--~~~~l~~L~~L~l~~n~l~~~  132 (134)
                      +  .+.++++|+.|.+..|.-.|.
T Consensus        80 EL~YLknlpsLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   80 ELEYLKNLPSLRTLWLDENPCCGE  103 (388)
T ss_pred             HHHHHhcCchhhhHhhccCCcccc
Confidence            3  577888889988888876553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.00016  Score=50.11  Aligned_cols=96  Identities=13%  Similarity=0.023  Sum_probs=59.6

Q ss_pred             ccccCCcccEEEcCCCccCC--CCccc---ccCCcEEEccCcccCCcCCC------CCCCccEEEcccCc-cccccCccc
Q 045549            6 VTQEVCRDIKIQFGKNSFDG--IKKLP---WKNLEYLDFRSNLLQGLFLD------PSSNMKVFLISNNR-FTREIPCLI   73 (134)
Q Consensus         6 ~~~~~~~L~~L~l~~n~l~~--~~~~~---~~~L~~L~l~~n~l~~~~~~------~l~~l~~L~l~~n~-l~~~~~~~~   73 (134)
                      ++.++..|..|+++.|.+..  +...+   ..+++.|++++++---....      ..+.+..||+++|. ++......|
T Consensus       255 l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~  334 (419)
T KOG2120|consen  255 LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  334 (419)
T ss_pred             HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence            45678888889999888764  33222   38889999998863311111      17889999999874 554555555


Q ss_pred             cCCCCccc------cccCCcc---CcCCCCCcEEEcc
Q 045549           74 CNLSTIEI------PWPIPET---LSKGSNLRTLNFN  101 (134)
Q Consensus        74 ~~l~~L~~------~~~~~~~---~~~~~~L~~l~l~  101 (134)
                      .+++.|++      ++..|..   +...++|.+|++.
T Consensus       335 ~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  335 FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             HhcchheeeehhhhcCCChHHeeeeccCcceEEEEec
Confidence            55555555      3334442   3445666666653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.46  E-value=0.021  Score=34.19  Aligned_cols=59  Identities=14%  Similarity=0.236  Sum_probs=34.0

Q ss_pred             ccccccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEccc
Q 045549            2 LEEEVTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISN   62 (134)
Q Consensus         2 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~   62 (134)
                      |+..+|.++.+|+.+.+.. .+..+++..+   .+++.+.+..+ +.......   +.+++.+.+..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence            5677888899999999985 5666777654   57889988775 44432222   55788888865

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=8.8e-05  Score=51.33  Aligned_cols=59  Identities=14%  Similarity=0.075  Sum_probs=35.2

Q ss_pred             ccCCcccEEEcCCCccCC-CCcccc--cCCcEEEccCcc-cCCc----CCCCCCCccEEEcccCccc
Q 045549            8 QEVCRDIKIQFGKNSFDG-IKKLPW--KNLEYLDFRSNL-LQGL----FLDPSSNMKVFLISNNRFT   66 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~-~~~~~~--~~L~~L~l~~n~-l~~~----~~~~l~~l~~L~l~~n~l~   66 (134)
                      +.+..|+.|.+.++++.+ +-..+.  ..|..++++.+. ++..    ....+++|..|.++||.+.
T Consensus       207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~  273 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF  273 (419)
T ss_pred             HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence            345566666777766654 333322  667777777764 2211    1111678888889888765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.00099  Score=46.31  Aligned_cols=17  Identities=24%  Similarity=0.376  Sum_probs=9.1

Q ss_pred             CcCCCCCcEEEccCCcc
Q 045549           89 LSKGSNLRTLNFNGNEL  105 (134)
Q Consensus        89 ~~~~~~L~~l~l~~n~l  105 (134)
                      +..++.++.++++.|..
T Consensus       142 l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  142 LDDLPKVTELHMSDNSL  158 (418)
T ss_pred             hhcchhhhhhhhccchh
Confidence            33455556666665533

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.17  E-value=0.016  Score=42.16  Aligned_cols=61  Identities=13%  Similarity=0.172  Sum_probs=36.9

Q ss_pred             cccEEEcCCC-ccCCCCcccccCCcEEEccCc-ccCCcCCCCCCCccEEEcccCccc--cccCccccCC
Q 045549           12 RDIKIQFGKN-SFDGIKKLPWKNLEYLDFRSN-LLQGLFLDPSSNMKVFLISNNRFT--REIPCLICNL   76 (134)
Q Consensus        12 ~L~~L~l~~n-~l~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~l~~n~l~--~~~~~~~~~l   76 (134)
                      +|+.|.+++| .++.+|..+..+|++|.+++| .+.. .   ..+|+.|+++.+.+.  +.+|..+..|
T Consensus        73 sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~s-L---P~sLe~L~L~~n~~~~L~~LPssLk~L  137 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISG-L---PESVRSLEIKGSATDSIKNVPNGLTSL  137 (426)
T ss_pred             CCcEEEccCCCCcccCCchhhhhhhheEccCcccccc-c---ccccceEEeCCCCCcccccCcchHhhe
Confidence            6888888774 444477666678899999888 4432 2   234666666554421  2455444433

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.97  E-value=0.0067  Score=26.04  Aligned_cols=22  Identities=5%  Similarity=0.134  Sum_probs=16.6

Q ss_pred             CCcccEEEcCCCccCCCCcccc
Q 045549           10 VCRDIKIQFGKNSFDGIKKLPW   31 (134)
Q Consensus        10 ~~~L~~L~l~~n~l~~~~~~~~   31 (134)
                      +++|+.|++++|.++.+|..++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4677888888888887777653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.97  E-value=0.0067  Score=26.04  Aligned_cols=22  Identities=5%  Similarity=0.134  Sum_probs=16.6

Q ss_pred             CCcccEEEcCCCccCCCCcccc
Q 045549           10 VCRDIKIQFGKNSFDGIKKLPW   31 (134)
Q Consensus        10 ~~~L~~L~l~~n~l~~~~~~~~   31 (134)
                      +++|+.|++++|.++.+|..++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4677888888888887777653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.23  E-value=0.0068  Score=46.98  Aligned_cols=19  Identities=21%  Similarity=0.368  Sum_probs=15.2

Q ss_pred             CCCCCcEEEccCCccccCc
Q 045549           91 KGSNLRTLNFNGNELVGSV  109 (134)
Q Consensus        91 ~~~~L~~l~l~~n~l~~~~  109 (134)
                      .+++|+.||.+++.+.+.+
T Consensus       248 ~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  248 VLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             cCccccEEecCCcchhHHH
Confidence            3789999999998887543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.50  E-value=0.0097  Score=41.08  Aligned_cols=42  Identities=21%  Similarity=0.370  Sum_probs=29.1

Q ss_pred             cCcCCCCCcEEEccCCccccCccc----cccCCCCCcEEEcCCCcc
Q 045549           88 TLSKGSNLRTLNFNGNELVGSVPR----SLLNCENLQVVDLGNNKI  129 (134)
Q Consensus        88 ~~~~~~~L~~l~l~~n~l~~~~p~----~~~~l~~L~~L~l~~n~l  129 (134)
                      .+-.|+.++..+++.|.|....|+    .+.+.+.|..|.+.+|.+
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            445678888888888877655543    355666778888877765

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.33  E-value=0.049  Score=22.75  Aligned_cols=15  Identities=53%  Similarity=0.835  Sum_probs=8.5

Q ss_pred             CCCcEEEcCCCcccc
Q 045549          117 ENLQVVDLGNNKIED  131 (134)
Q Consensus       117 ~~L~~L~l~~n~l~~  131 (134)
                      ++|+.|++++|.|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            456777777776654

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=92.47  E-value=0.1  Score=22.54  Aligned_cols=18  Identities=11%  Similarity=0.252  Sum_probs=12.6

Q ss_pred             cccEEEcCCCccCCCCcc
Q 045549           12 RDIKIQFGKNSFDGIKKL   29 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~   29 (134)
                      .|+.|++++|+++.+|+.
T Consensus         3 ~L~~L~vs~N~Lt~LPeL   20 (26)
T smart00364        3 SLKELNVSNNQLTSLPEL   20 (26)
T ss_pred             ccceeecCCCccccCccc
Confidence            567777777777776653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.81  E-value=0.5  Score=28.09  Aligned_cols=98  Identities=26%  Similarity=0.380  Sum_probs=48.1

Q ss_pred             ccccccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCC---CCCCCccEEEcccCccccccCccccC
Q 045549            2 LEEEVTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFL---DPSSNMKVFLISNNRFTREIPCLICN   75 (134)
Q Consensus         2 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~---~~l~~l~~L~l~~n~l~~~~~~~~~~   75 (134)
                      |....|.+++.++.+.+.++ +..++...+   .+++.+.+..+ +.....   ...+.++.+++..+ +. .++     
T Consensus        26 I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~-----   96 (129)
T PF13306_consen   26 IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNCTNLKNIDIPSN-IT-EIG-----   96 (129)
T ss_dssp             E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-TTECEEEETTT--B-EEH-----
T ss_pred             eChhhccccccccccccccc-ccccceeeeeccccccccccccc-ccccccccccccccccccccCcc-cc-EEc-----
Confidence            45667888889999999885 777777654   47899998763 222222   22678888888654 33 222     


Q ss_pred             CCCccccccCCccCcCCCCCcEEEccCCccccCccccccCCCCCc
Q 045549           76 LSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQ  120 (134)
Q Consensus        76 l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~  120 (134)
                                ...+..+ .++.+.+.. .+...-...|.++++|+
T Consensus        97 ----------~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   97 ----------SSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             ----------TTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ----------hhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence                      3356666 777787765 33323345677776653

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=90.47  E-value=0.29  Score=21.08  Aligned_cols=15  Identities=47%  Similarity=0.707  Sum_probs=8.7

Q ss_pred             CCCcEEEcCCCcccc
Q 045549          117 ENLQVVDLGNNKIED  131 (134)
Q Consensus       117 ~~L~~L~l~~n~l~~  131 (134)
                      .+|+.|++++|+|+.
T Consensus         2 ~~L~~L~L~~NkI~~   16 (26)
T smart00365        2 TNLEELDLSQNKIKK   16 (26)
T ss_pred             CccCEEECCCCccce
Confidence            456666666666543

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=90.20  E-value=0.25  Score=21.53  Aligned_cols=14  Identities=43%  Similarity=0.660  Sum_probs=9.8

Q ss_pred             CCCcEEEcCCCccc
Q 045549          117 ENLQVVDLGNNKIE  130 (134)
Q Consensus       117 ~~L~~L~l~~n~l~  130 (134)
                      ++|++|++++|.|+
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            35777777777774

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.90  E-value=0.0086  Score=40.44  Aligned_cols=80  Identities=16%  Similarity=0.139  Sum_probs=47.4

Q ss_pred             cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccccCc
Q 045549           32 KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSV  109 (134)
Q Consensus        32 ~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~  109 (134)
                      .+.+.|+++.|++-..-...  ++.+.-+|++.|.+. ..|                .-+++...++.+++..|..+ ..
T Consensus        42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~----------------~d~~q~~e~~~~~~~~n~~~-~~  103 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLP----------------KDAKQQRETVNAASHKNNHS-QQ  103 (326)
T ss_pred             ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hCh----------------hhHHHHHHHHHHHhhccchh-hC
Confidence            66777777777765433333  666777777777665 333                33444444555555555555 55


Q ss_pred             cccccCCCCCcEEEcCCCcc
Q 045549          110 PRSLLNCENLQVVDLGNNKI  129 (134)
Q Consensus       110 p~~~~~l~~L~~L~l~~n~l  129 (134)
                      |-+++..++++.++.-+|.+
T Consensus       104 p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  104 PKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             CccccccCCcchhhhccCcc
Confidence            66666666666666666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.5 bits (202), Expect = 3e-19
 Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 37/138 (26%)

Query: 31  WKNLEYLDFRSNLLQG-----LFLDPSSNMKVFLISNNRFTREIPCLICNLSTIE----- 80
             +L  LD  SN   G     L  +P + ++   + NN FT +IP  + N S +      
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426

Query: 81  -------IPW--------------------PIPETLSKGSNLRTLNFNGNELVGSVPRSL 113
                  IP                      IP+ L     L TL  + N+L G +P  L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486

Query: 114 LNCENLQVVDLGNNKIED 131
            NC NL  + L NN++  
Sbjct: 487 SNCTNLNWISLSNNRLTG 504

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.2 bits (178), Expect = 4e-16
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 16  IQFGKNSFDGIKKLP-----WKNLEYLDFRSNLLQGLFLDPSS-----NMKVFLISNNRF 65
           +    N   G   +P        L  L    N+L+G    P        ++  ++  N  
Sbjct: 423 LHLSFNYLSG--TIPSSLGSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDL 478

Query: 66  TREIPCLICNLSTIEIPW--------PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCE 117
           T EIP  + N + +             IP+ + +  NL  L  + N   G++P  L +C 
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538

Query: 118 NLQVVDLGNNKI 129
           +L  +DL  N  
Sbjct: 539 SLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.8 bits (156), Expect = 4e-13
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 15/115 (13%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSSNM---KVFLISNNRFTREIPCLIC----NLSTIEIPW- 83
             L+ L+  SN   G    P   +   +   ++ N+FT EIP  +      L+ +++   
Sbjct: 247 TELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 84  ----PIPETLSKGSNLRTLNFNGNELVGSVPRSLL-NCENLQVVDLGNNKIEDIL 133
                +P      S L +L  + N   G +P   L     L+V+DL  N+    L
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.2 bits (152), Expect = 1e-12
 Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 21/133 (15%)

Query: 16  IQFGKNSFDG-IKKLPWKNLEYLDFRSNLLQGLF----LDPSSNMKVFLISNNRFTREIP 70
           +    N F G I  LP K+L+YL    N   G            +    +S N F   +P
Sbjct: 252 LNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 71  CLICNLSTIE------------IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNC-E 117
               + S +E            +P    +TL K   L+ L+ + NE  G +P SL N   
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELP---MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368

Query: 118 NLQVVDLGNNKIE 130
           +L  +DL +N   
Sbjct: 369 SLLTLDLSSNNFS 381

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.5 bits (145), Expect = 1e-11
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 21/128 (16%)

Query: 21  NSFDGIKKLPW----KNLEYLDFRSNLLQG------LFLDPSSNMKVFLISNNRFTREIP 70
           N+ D   K+       +LE LD  +N + G      +  D    +K   IS N+ + ++ 
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195

Query: 71  CLICNLSTIEIPW--------PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVV 122
             +     +E            IP  L   S L+ L+ +GN+L G   R++  C  L+++
Sbjct: 196 --VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 123 DLGNNKIE 130
           ++ +N+  
Sbjct: 253 NISSNQFV 260

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 7e-10
 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 21/106 (19%)

Query: 31  WKNLEYLDFRSNLLQGLFLDPS----SNMKVFLISNNRFTREIPCLICNLSTIEIPWPIP 86
              LE L   SN   G     +      +KV  +S N F+ E+P  + NLS         
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS--------- 367

Query: 87  ETLSKGSNLRTLNFNGNELVGSVPRSLLNC--ENLQVVDLGNNKIE 130
                 ++L TL+ + N   G +  +L       LQ + L NN   
Sbjct: 368 ------ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 13/111 (11%)

Query: 31  WKNLEYLDFRSNLLQGLFLDPSS-NMKVFLISNNRFTREIPCLICNLS----------TI 79
            ++L +LD  +NL  G    P++   +   I+ N    +    I N             +
Sbjct: 537 CRSLIWLDLNTNLFNGTI--PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594

Query: 80  EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130
           E      E L++ S     N       G    +  N  ++  +D+  N + 
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 11/109 (10%)

Query: 33  NLEYLDFRSNLLQGLFLDPSSNMKVFL---ISNNRFTREIPCLICNLSTIE--------I 81
                +  S +  G       N    +   +S N  +  IP  I ++  +         I
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

Query: 82  PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130
              IP+ +     L  L+ + N+L G +P+++     L  +DL NN + 
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 18/116 (15%)

Query: 32  KNLEYLDFRSNLLQGLF--LDPSSNMKVFLISNNRFTREIPCL--ICNLSTIEI------ 81
             LE L   ++ + G       S+++    +S N  +  +  L  + + S ++       
Sbjct: 77  TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136

Query: 82  ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLL---NCENLQVVDLGNNKIE 130
               P  +     K ++L  L+ + N + G+     +    C  L+ + +  NKI 
Sbjct: 137 TLDFPGKVSG-GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 8/107 (7%)

Query: 31  WKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPW------- 83
              +            +  D          +   F       +  LST            
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

Query: 84  -PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI 129
                T     ++  L+ + N L G +P+ + +   L +++LG+N I
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 13/111 (11%)

Query: 31  WKNLEYLDFRSNLLQGLFLDPS-----SNMKVFLISNNRFTREIPCLICNLSTIE----- 80
               +      NLL+   +        S      I++  +         N  ++      
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

Query: 81  ---IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNK 128
              +   IP+ +     L  LN   N++ GS+P  + +   L ++DL +NK
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 15/94 (15%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSS--NMK--VFL-ISNNRFTREIPCLICNLSTIEI----- 81
            ++ +LD   N+L G    P    +M     L + +N  +  IP  + +L  + I     
Sbjct: 632 GSMMFLDMSYNMLSGYI--PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689

Query: 82  ---PWPIPETLSKGSNLRTLNFNGNELVGSVPRS 112
                 IP+ +S  + L  ++ + N L G +P  
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSS--NMK----VFLISNNRFTREIPCLICNLS---TIEIP 82
             +  LD     L   +  PSS  N+     +++   N     IP  I  L+    + I 
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 83  W-----PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI 129
                  IP+ LS+   L TL+F+ N L G++P S+ +  NL  +    N+I
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.2 bits (139), Expect = 6e-11
 Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 17/113 (15%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSS-----NMKVFLISNNRFTREIPCLICNLSTIEIPW--- 83
           K L  LDF  N L G    P S     N+       NR +  IP    + S +       
Sbjct: 125 KTLVTLDFSYNALSGTL--PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 84  ------PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130
                  IP T +   NL  ++ + N L G       + +N Q + L  N + 
Sbjct: 183 RNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.8 bits (133), Expect = 5e-10
 Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 15/111 (13%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSS----NMKVFLISNNRFTREIPCLICNLSTIEIPW---- 83
           K    +    N L G    P +    N+    +S N    +   L  +    +       
Sbjct: 174 KLFTSMTISRNRLTGKI--PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 84  ----PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130
                + + +    NL  L+   N + G++P+ L   + L  +++  N + 
Sbjct: 232 SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 11/106 (10%)

Query: 33  NLEYLDFRSNLLQG---LFLDPSSNMKVFLISNNRFTREIPCL--ICNLSTIEIPW---- 83
           NL ++D   N+L+G   +      N +   ++ N    ++  +    NL+ +++      
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

Query: 84  -PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNK 128
             +P+ L++   L +LN + N L G +P    N +   V    NNK
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 7e-11
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 12/113 (10%)

Query: 32  KNLEYLDFRSNLLQGLF---LDPSSNMKVFLISNNRFTREI-PCLICNLSTIE------- 80
           +NL YLD      +  F    +  S+++V  ++ N F     P +   L  +        
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 81  -IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
            +    P   +  S+L+ LN + N              +LQV+D   N I   
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 8e-09
 Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 11/111 (9%)

Query: 33  NLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIE--------I 81
           + + LD   N L+ L          ++V  +S             +LS +         I
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 82  PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                   S  S+L+ L      L       + + + L+ +++ +N I+  
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 13/111 (11%)

Query: 32  KNLEYLDFRSNLLQGLF----LDPSSNMKVFLISNNRFTREIPCLICNLSTIE------- 80
            +LE L    N  Q  F         N+    +S  +  +  P    +LS+++       
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

Query: 81  -IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCE-NLQVVDLGNNKI 129
                        ++L+ L+++ N ++ S  + L +   +L  ++L  N  
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 16/117 (13%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI------- 81
            +L  L    N +Q L        S+++  +             I +L T++        
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 82  --PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVV----DLGNNKIEDI 132
              + +PE  S  +NL  L+ + N++       L     + ++    DL  N +  I
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 11/105 (10%), Positives = 29/105 (27%), Gaps = 17/105 (16%)

Query: 32  KNLEYLDFRSNLLQGLF--LDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETL 89
            +L+YLD   N +  +         ++     ++   +                      
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE---------------FSVF 417

Query: 90  SKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH 134
               NL  L+ +      +         +L+V+ +  N  ++   
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 15/107 (14%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 32  KNLEYLDFRSNLLQGLF-LDPSSNMKVFLISNNRFTREIPCLICNLSTI---EIPWPIPE 87
            N+      S  ++ +     +   +   + N +F +     + +L  +           
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341

Query: 88  TLSKGSNLRTLNFNGNEL--VGSVPRSLLNCENLQVVDLGNNKIEDI 132
           +     +L  L+ + N L   G   +S     +L+ +DL  N +  +
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 17/134 (12%), Positives = 34/134 (25%), Gaps = 21/134 (15%)

Query: 20  KNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMK--VFLISNNRFTREIPCLICN-- 75
                 + ++P  NL  LD   N +  +       ++     + NN  +  +        
Sbjct: 166 CTDLRVLHQMPLLNLS-LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 76  -------------LSTIEIPWPIPETLSKGSNLRTLNFNGNEL---VGSVPRSLLNCENL 119
                         +   +       L    NL    F    L   +  +        N+
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 120 QVVDLGNNKIEDIL 133
               L +  IE + 
Sbjct: 285 SSFSLVSVTIERVK 298

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 13/105 (12%)

Query: 32  KNLEYLDFRSNLLQGL----FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPE 87
           + +E L F  N L+ +         S M     S N                     +  
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP---------LDP 427

Query: 88  TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
           T  KG N+ ++N + N++             L  ++L  N + +I
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 9e-10
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 15/106 (14%)

Query: 31  WKNLEYLDFRSNLLQGLFLDPS----SNMKVFLISNNRFTREIPCLICNLSTIEIPWPIP 86
              L  +D R N L  L  D        +    +S N F+ + P    N ST        
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSST-------- 537

Query: 87  ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
             L         +  GN  +   P  +  C +L  + +G+N I  +
Sbjct: 538 --LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV 581

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 13/108 (12%), Positives = 31/108 (28%), Gaps = 11/108 (10%)

Query: 33  NLEYLDFRSNLLQGLFLDPSS-----NMKVFLISNNRFTREIPCLICNLSTIEIP---WP 84
               +   SN +  +     +      ++ F + N+ F  E  C        E       
Sbjct: 184 KDTQIGQLSNNITFV---SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240

Query: 85  IPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                    +L  +       +  +P  L     +Q++++  N+    
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 15/141 (10%), Positives = 37/141 (26%), Gaps = 39/141 (27%)

Query: 32  KNLEYLDFRSNLLQGLFLDPS----------------------SNMKVFLISNNRFTREI 69
             L      ++      +  +                       ++    + N     ++
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 70  PCLICNLSTIEI----------------PWPIPETLSKGSNLRTLNFNGNEL-VGSVPRS 112
           P  +  L  +++                 W        G  ++ +    N L    V  S
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325

Query: 113 LLNCENLQVVDLGNNKIEDIL 133
           L   + L +++   N++E  L
Sbjct: 326 LQKMKKLGMLECLYNQLEGKL 346

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 17/128 (13%), Positives = 33/128 (25%), Gaps = 28/128 (21%)

Query: 32  KNLEYLDFRSNLLQGL----------FLDPSSNMKVFLISNNRFTREIPCLICNLSTI-- 79
             +  +DF  N +  +                N+    +SNN+ ++    L    S +  
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 80  -------------EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSL--LNCENLQVVDL 124
                               E       L +++   N+L   +           L  +DL
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDL 520

Query: 125 GNNKIEDI 132
             N     
Sbjct: 521 SYNSFSKF 528

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 13/120 (10%), Positives = 30/120 (25%), Gaps = 19/120 (15%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPI------ 85
             ++ ++   N              +         + I     NL T  +   +      
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 86  -------------PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                                 L +LN   N++           E ++ +   +NK++ I
Sbjct: 333 GMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 17/131 (12%), Positives = 31/131 (23%), Gaps = 31/131 (23%)

Query: 24  DGIKKLPWKNLEYLDFRSNLLQGL-----------FLDPSSNMKVFLISNNRFTREIPCL 72
           D  +      L  +D   N                     +         NR  RE P  
Sbjct: 505 DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR---DAQGNRTLREWPEG 561

Query: 73  ICNLSTIE-----------IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQV 121
           I    ++            +     +      N+  L+   N  +      +       +
Sbjct: 562 ITLCPSLTQLQIGSNDIRKVN---EKITP---NISVLDIKDNPNISIDLSYVCPYIEAGM 615

Query: 122 VDLGNNKIEDI 132
             L  +K +DI
Sbjct: 616 YMLFYDKTQDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 9/114 (7%), Positives = 27/114 (23%), Gaps = 7/114 (6%)

Query: 21  NSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIE 80
                      K    + ++   +     +  S++    I+++   + I           
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 81  IP-------WPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN 127
                      + + + + + LR      +  V          EN +       
Sbjct: 187 QIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 7/101 (6%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSK 91
             LE L   S+  +              IS N    +   +  +     + +   E  S 
Sbjct: 105 TELEVLALGSHGEKVNERLFGPK----GISANMSDEQKQKMRMHYQKTFVDYDPREDFS- 159

Query: 92  GSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
             +L     N +    S+ +S         +   +N I  +
Sbjct: 160 --DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 88  TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH 134
           +L+    +  L+  G    G VP ++     L+V+ LG++  +    
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 21/122 (17%), Positives = 34/122 (27%), Gaps = 20/122 (16%)

Query: 29  LPWKNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIE----- 80
           L W NL  LD   N L  +          ++ F +  N         +  L  +      
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK 304

Query: 81  ------------IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNK 128
                       +P     +      L  LN   N++ G          NL+ + L N+ 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364

Query: 129 IE 130
             
Sbjct: 365 TS 366

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 14/115 (12%)

Query: 32  KNLEYLDFRSNLLQGLF----LDPSSNMKVFLISNNRFTREIPCLICNLSTIEI------ 81
            +LE LD   N +             N+    +S N++ +        + +++       
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

Query: 82  ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                   P       NL  L+ + N +       L   E L+++DL +N +  +
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 33  NLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIE--------IPWP 84
           + E  D     L  +  D  +N+ V  +++N+  R         S +         I   
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 85  IPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
            PE   K   L+ LN   NEL     ++   C NL  + L +N I+ I
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 11/111 (9%)

Query: 33  NLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIE--------I 81
            L  LD   N +  L          +KV  + +N  ++         + +         I
Sbjct: 50  QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109

Query: 82  PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                    K  NL TL+ + N L  +   + +  ENLQ + L NNKI+ +
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 24/136 (17%)

Query: 21  NSFDGIKKLPW-----KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTR----- 67
            +   +   P      +NL  LD  +N +  +    L+    +++  + +N   R     
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523

Query: 68  ---EIPCLICNLSTIE--------IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNC 116
                   +  LS +               E       L+ ++   N L         N 
Sbjct: 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583

Query: 117 ENLQVVDLGNNKIEDI 132
            +L+ ++L  N I  +
Sbjct: 584 VSLKSLNLQKNLITSV 599

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 5e-08
 Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 16/120 (13%)

Query: 29  LPWKNLEYLDFRSNLLQGLF---LDPSSNMKVFLISNNRFTREIPCLIC----------- 74
               +L+ L+  SN ++            +    ++N +    +   +C           
Sbjct: 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 75  NLSTIEIPWPIPETLS--KGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
           +LS  ++      T    K +NL  L+ + N L      S      L+   L  N I+ +
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 24/127 (18%)

Query: 32  KNLEYLDFRSNLLQGLF-------LDPSS-----NMKVFLISNNRFTREIPCLICNLST- 78
            N+ YL+ + +  +          +D  S      ++   + +N        +   L   
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL 355

Query: 79  ---------IEIPWPIPETLS--KGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN 127
                      +     ET      S L  LN   N++      +     +L+V+DLG N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 128 KIEDILH 134
           +I   L 
Sbjct: 416 EIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 15/116 (12%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIE-------- 80
            NL  L   SN +Q +         N+    +S+N  +         L  ++        
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 81  ---IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133
              +       +   S+L+ L  + N++    P        L  + L N ++   L
Sbjct: 157 IQALK-SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 17/122 (13%), Positives = 35/122 (28%), Gaps = 21/122 (17%)

Query: 32  KNLEYLDFRSNLLQGLF---LDPSSNMKVFLISNNRFTR--EIPCLICNLSTIE------ 80
           +N+  +    N    L         +++  ++           P     L  +       
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 81  --IPWPIPETLSKGSNLRTLNFNGNEL--------VGSVPRSLLNCENLQVVDLGNNKIE 130
             I     + L     L  L+   N L         G     L    +L +++L +N  +
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 131 DI 132
           +I
Sbjct: 550 EI 551

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 16/119 (13%), Positives = 40/119 (33%), Gaps = 16/119 (13%)

Query: 32  KNLEYLDFRSNLLQGLFLDPS-------SNMKVFLISNNRFTREIPCLICNLSTIE---- 80
            NL+YL   ++      L          S + +  ++ N+ ++        L  +E    
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412

Query: 81  ----IPWPIP-ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH 134
               I   +  +      N+  +  + N+ +     S     +LQ + L    ++++  
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 12/118 (10%), Positives = 34/118 (28%), Gaps = 16/118 (13%)

Query: 32  KNLEYLDFRSNLLQGL------FLDPSSNMKVFLISNNRFTREIPCLICNLSTI------ 79
             L  L   +  L             +++++   +SN++ +         L         
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 80  ----EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133
                +     ++ +    L       N +      SL    N++ ++L  +  +  +
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 15/116 (12%)

Query: 32  KNLEYLDFRSNLLQGL----FLDPSSNMKVFLISNNRFTREIPCLICNLSTIE------- 80
             LE LD     L+             +KV  +S++        L   L  ++       
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 81  ----IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                      +L     L  L  +  +L      +  + + +  VDL +N++   
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKV-FLISNNRFTREIPCLICNLST--------- 78
             L+ L   +N  + L         ++    +  N +        + NL           
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 79  -IEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
            IE        L   S+L++LN + NE +     +   C  L+++DL   +++  
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 11/111 (9%)

Query: 33  NLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIE--------I 81
           NL +LD     +  +          +   +++ N         +     ++        I
Sbjct: 58  NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117

Query: 82  PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                  L     L +L    N +           E L+V+D  NN I  +
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 19/103 (18%)

Query: 33  NLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETL 89
           + E L+F  N+L  +         N+    ++  +          +              
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH------------ 81

Query: 90  SKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                L TL    N L+     +L   + L+ +      I  I
Sbjct: 82  ----RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI 120

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 16/116 (13%)

Query: 32  KNLEYLDFRSNLLQGLFLD---PSSNMKVFLISNNRFT----------REIPCLICNLST 78
           K LE L   SN +  + L    P+  +KV    NN             ++   L  NL+ 
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 79  IEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCE--NLQVVDLGNNKIEDI 132
            +I   I       +  ++LNF G + +  + + L N    +L +    +   EDI
Sbjct: 189 NDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 12/125 (9%)

Query: 17  QFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLD-----PSSNMKVFLISNNRFTREIPC 71
           Q     F G+K    ++L    F     + +           +++   +  + F      
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 72  LICNLSTIEIPW-------PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDL 124
                S ++           +P  L   S L+ L  + N+       S  N  +L  + +
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 125 GNNKI 129
             N  
Sbjct: 333 KGNTK 337

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 39  FRSNLLQGLFLDPSSNMKVFL--ISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLR 96
           F S + Q L    + N+ V    + N+           ++   +I   + E L +  ++ 
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE-MSVE 257

Query: 97  TLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
           ++N   +        +      LQ +DL    + ++
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 15/113 (13%), Positives = 38/113 (33%), Gaps = 15/113 (13%)

Query: 32  KNLEYLDFRSNLLQGLFLDPS------SNMKVFLISNNRFTREIPCLICNLSTIE----- 80
             L++L+ + N      +  +        +++ ++S    +        +L  +      
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508

Query: 81  ---IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130
              +     E LS    +  LN   N +   +P  L      + ++L  N ++
Sbjct: 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 2e-09
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 15/106 (14%)

Query: 31  WKNLEYLDFRSNLLQGL----FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIP 86
              L  +D R N L  L           +    +S N F+   P    N S         
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQ-------- 777

Query: 87  ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
             L         +  GN ++   P  +  C +L  + +G+N I  +
Sbjct: 778 --LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV 821

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 4e-09
 Identities = 16/119 (13%), Positives = 40/119 (33%), Gaps = 7/119 (5%)

Query: 21  NSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPS----SNMKVFLISNNRFTREIPC---LI 73
                IKK    +L+     +   +  F+  +    + +++   +N+ FT +        
Sbjct: 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED 471

Query: 74  CNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
            N    +       + S   +L  +       +  +P  L +   LQ +++  N+    
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 24/125 (19%)

Query: 32  KNLEYLDFRSNLLQGL----FLDPSSNMKVFLISNNRFTREIPCLICNLSTIE------- 80
             +E L F  N L+ +           M     S N+   E   + C++   +       
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 81  ------IPWPIPETLSKGSNLRTLNFNGNEL-------VGSVPRSLLNCENLQVVDLGNN 127
                 I     E  + GS + T+  + N +       +     +  N   L  +DL  N
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 128 KIEDI 132
           K+  +
Sbjct: 739 KLTSL 743

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 14/118 (11%), Positives = 35/118 (29%), Gaps = 19/118 (16%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIE--------IPW 83
             L+ + F ++       + + + +       +          NL  +            
Sbjct: 448 TKLQIIYFANSPFTYD--NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505

Query: 84  PIPETLSKGSNLRTLNFNGNELVG---------SVPRSLLNCENLQVVDLGNNKIEDI 132
            +P+ L     L++LN   N  +           +         +Q+  +G N +E+ 
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 15/118 (12%)

Query: 20  KNSFDGIKKLPWKNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNL 76
           +N    +      N   +    N +Q          S +   ++SNN  T  IP      
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIP------ 713

Query: 77  STIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLL--NCENLQVVDLGNNKIEDI 132
                  P          L T++   N+L  S+           L  +D+  N     
Sbjct: 714 --ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSF 768

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 11/105 (10%)

Query: 32  KNLEYLDFRSNLLQGLF---LDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPET 88
           K+L  ++  +          L     ++   I+ NR       L  + + +       + 
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI-SAAQLKADWTRL------ADD 543

Query: 89  LSKGSNLRTLNFNGNELVG-SVPRSLLNCENLQVVDLGNNKIEDI 132
              G  ++      N L       SL     L ++D  +NK+  +
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL 588

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 12/106 (11%), Positives = 30/106 (28%), Gaps = 24/106 (22%)

Query: 32  KNLEYLDFRSNLLQGL----FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPE 87
             ++      N L+       L     + +    +N+                      E
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR------------------HLE 589

Query: 88  TLSKGSNLRTLNFNGNELVGSVPRSLL-NCENLQVVDLGNNKIEDI 132
                  L  L  + N++   +P       + ++ +   +NK++ I
Sbjct: 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI 634

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 19/127 (14%), Positives = 32/127 (25%), Gaps = 23/127 (18%)

Query: 24  DGIKKLPWKNLEYLDFRSNLLQGL-----------FLDPSSNMKVFLISNNRFTREIPCL 72
           D  +      L  +D   N                               NR  R+ P  
Sbjct: 745 DDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR---DAEGNRILRQWPTG 801

Query: 73  ICNLSTIEIPW-------PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLG 125
           I    ++            + E L+    L  L+   N  +     S+       +  L 
Sbjct: 802 ITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLL 859

Query: 126 NNKIEDI 132
            +K +DI
Sbjct: 860 YDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 9/47 (19%), Positives = 16/47 (34%)

Query: 88  TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH 134
            L     +  L+  G    G VP ++     L+V+  G +       
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 12/113 (10%)

Query: 32  KNLEYLDFRSNLLQGLF---LDPSSNMKVFLISNNRFTREIP-CLICNLSTIE------- 80
           + L YLD      +  F       +++    ++ N F       +  N + +        
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

Query: 81  -IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
            +             L+ LN + N L+           +L  +D   N+IE  
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 16/119 (13%)

Query: 15  KIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLF-LDPSSNMKVFLISNNRFTREIPCLI 73
            +   +        L    L+ L    N     F      ++    +S N  +    C  
Sbjct: 311 SLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSY 370

Query: 74  CNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
            +L T              ++LR L+ + N  +  +  + +  E LQ +D  ++ ++ +
Sbjct: 371 SDLGT--------------NSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRV 414

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 12/110 (10%)

Query: 32  KNLEYLDFRSNLLQGL----FLDPSSNMKVFLISNNRFTREIPCLICNLSTIE------- 80
            +L  L    N  +          ++N+    +S  +  +    +   L  ++       
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

Query: 81  -IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI 129
            + +      ++  +L TL+ + N +  S        ++L   +L NN +
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 12/113 (10%)

Query: 32  KNLEYLDFRSNLLQGLF---LDPSSNMKVFLISNNRFTREIPCLICNLSTIE-------- 80
             L++LD     ++ +         ++   +++ N      P     L+++E        
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115

Query: 81  IPWPIPETLSKGSNLRTLNFNGNELVG-SVPRSLLNCENLQVVDLGNNKIEDI 132
           +       + +   L+ LN   N +    +P    N  NL  VDL  N I+ I
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 8/104 (7%)

Query: 37  LDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIE--------IPWPIPET 88
                  L  +  D  S+ K   +S N           N S ++        I     + 
Sbjct: 16  YQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA 75

Query: 89  LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                +L  L   GN +    P S     +L+ +     K+  +
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 11/111 (9%)

Query: 33  NLEYLDFRSNLLQGLFLDPSSNMK--VFL-ISNNRFTREIPCLICNLSTIE--------I 81
           + + +D   N L+ L     SN     +L +S              L  +         I
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 82  PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
               P + S  ++L  L     +L       +     L+ +++ +N I   
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 12/107 (11%), Positives = 25/107 (23%), Gaps = 17/107 (15%)

Query: 29  LPWKNLEYLDFRSNLLQGL--FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIP 86
           L   +L +LD   N    +         ++     ++   R                   
Sbjct: 373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE---------------F 417

Query: 87  ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133
                   L  L+ +            L   +L  + +  N  +D  
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 12/100 (12%), Positives = 22/100 (22%), Gaps = 4/100 (4%)

Query: 33  NLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKG 92
            L  L  R N      +          ++     R I     +   +EI  P        
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQN----LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 93  SNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
             +                      N+  + L    I+ +
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 9e-07
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 10/104 (9%)

Query: 33  NLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPW----PIPET 88
            L  L   +N L  L   PS  +K  ++S NR T  +P L   L  + +       +P  
Sbjct: 202 ELYKLWAYNNRLTSLPALPS-GLKELIVSGNRLT-SLPVLPSELKELMVSGNRLTSLPML 259

Query: 89  LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
            S    L +L+   N+L   +P SL++  +   V+L  N + + 
Sbjct: 260 PS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 21/102 (20%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSK 91
                L+   + L  L     +++   +I +N  T  +P L                   
Sbjct: 40  NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPALP------------------ 80

Query: 92  GSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133
              LRTL  +GN+L  S+P        L +       +  + 
Sbjct: 81  -PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP 120

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 37.6 bits (87), Expect = 6e-04
 Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 14/116 (12%)

Query: 21  NSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIE 80
           N    +  LP   L  L    N L  L + P   ++   +S+N+    +P L   L  + 
Sbjct: 111 NPLTHLPALP-SGLCKLWIFGNQLTSLPVLPP-GLQELSVSDNQLA-SLPALPSELCKLW 167

Query: 81  IPW----PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                   +P   S    L+ L+ + N+L  S+P        L      NN++  +
Sbjct: 168 AYNNQLTSLPMLPS---GLQELSVSDNQLA-SLPTLPSELYKL---WAYNNRLTSL 216

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 13/119 (10%)

Query: 26  IKKLP--WKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTI---- 79
           +  LP     LEY++  +N L  L   P+ +++V  + NN+ T  +P L  +L  +    
Sbjct: 132 LTMLPELPALLEYINADNNQLTMLPELPT-SLEVLSVRNNQLT-FLPELPESLEALDVST 189

Query: 80  ----EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH 134
                +P                    N +   +P ++L+ +    + L +N +   + 
Sbjct: 190 NLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 12/111 (10%)

Query: 26  IKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPW-- 83
           +K+        L      L  L  +    + V  I+ N     +P L  +L  ++     
Sbjct: 53  LKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLPELPASLEYLDACDNR 111

Query: 84  --PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
              +PE     ++L+ L+ + N+L   +P        L+ ++  NN++  +
Sbjct: 112 LSTLPELP---ASLKHLDVDNNQLT-MLPELP---ALLEYINADNNQLTML 155

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 16/115 (13%)

Query: 26  IKKLP--WKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPW 83
           +  LP    +LE L  R+N L  L   P  +++   +S N     +P +       E   
Sbjct: 152 LTMLPELPTSLEVLSVRNNQLTFLPELPE-SLEALDVSTNLLE-SLPAVPVRNHHSEETE 209

Query: 84  P-----------IPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN 127
                       IPE +       T+    N L  S  R  L+ +  Q    G  
Sbjct: 210 IFFRCRENRITHIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPR 263

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 21/113 (18%)

Query: 21  NSFDGIKKLPWKNLEYLDFRSNLLQGL-FLDPSSNMKVFLISNNRFTREIPCLICNLSTI 79
                +  L    L +L+  +N +  +  +   + +K+  + +N+ +             
Sbjct: 234 TDLSPLANLS--QLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD------------ 279

Query: 80  EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                    L+  S L +L  N N+L       +    NL  + L  N I DI
Sbjct: 280 ------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 20/102 (19%)

Query: 32  KNLEYLDFRSNLLQGL-FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLS 90
            NL  L    + +  +  L   + M    +  N                         LS
Sbjct: 110 TNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLS-----------------DLSPLS 152

Query: 91  KGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
             + L  L    +++    P  + N  +L  + L  N+IEDI
Sbjct: 153 NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 20/102 (19%)

Query: 32  KNLEYLDFRSNLLQGL-FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLS 90
             L  L   +N +  +  L   +N++   ++ +  +   P                  L+
Sbjct: 88  VKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP------------------LA 129

Query: 91  KGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
             + + +LN   N  + S    L N   L  + +  +K++D+
Sbjct: 130 NLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDV 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 14/121 (11%), Positives = 41/121 (33%), Gaps = 12/121 (9%)

Query: 21  NSFDGIKKLPWKNLEYLDFRSNLLQGL-FLDPSSNMKVFLISNNRFTREIPCLICNLSTI 79
               GI+     N++ L   +        +   SN++   I     T +    +  L+++
Sbjct: 57  TDLTGIEYA--HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114

Query: 80  E--------IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED 131
                        I   ++    + +++ + N  +  +   L     L+ +++  + + D
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD 173

Query: 132 I 132
            
Sbjct: 174 Y 174

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 19/120 (15%)

Query: 14  IKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGL-FLDPSSNMKVFLISNNRFTREIPCL 72
           +    G++S   I +    +L Y+   +  +  L  ++ + N+K   I+N          
Sbjct: 26  LNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI--------- 76

Query: 73  ICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
             + +           +S  SNL  L   G ++      +L    +L ++D+ ++  +D 
Sbjct: 77  --HATNYN-------PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 16/111 (14%), Positives = 31/111 (27%), Gaps = 12/111 (10%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSSNM---KVFLISNNRFTREIPCLICNLSTIEIPW----- 83
            NLE L      +    +   S +    +  IS++     I   I  L  +         
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 84  --PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                  L     L++LN   + +       + +   L  +   +  I   
Sbjct: 148 AITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 17/130 (13%), Positives = 44/130 (33%), Gaps = 21/130 (16%)

Query: 22  SFDGIKKLP-----WKNLEYLDFRSNLLQGLFLDPSS-----NMKVFLISNNRFTREIPC 71
            + GI+ LP      +NL+ L  R++ L  L     +      ++   +      R  P 
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSPLSAL---GPAIHHLPKLEELDLRGCTALRNYPP 247

Query: 72  LICNLSTIEIPW--------PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVD 123
           +    + ++            +P  + + + L  L+  G   +  +P  +       ++ 
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Query: 124 LGNNKIEDIL 133
           +  +    + 
Sbjct: 308 VPPHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 27/115 (23%)

Query: 24  DGIKKLPWKNLEYLDFRSNLLQGLFLDPSS-----NMKVFLISNNRFTREIPCLICNLST 78
           D ++         L+ RS  L      P       +++   I       E+P  +     
Sbjct: 73  DLLEDATQPGRVALELRSVPLPQF---PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF-- 126

Query: 79  IEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDL-GNNKIEDI 132
                         + L TL    N L  ++P S+ +   L+ + +    ++ ++
Sbjct: 127 --------------AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 4e-06
 Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 20/127 (15%)

Query: 10  VCRDIKI-QFGKNSFDGIKKLPWKNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRF 65
           V  D+ I    ++ + G + +   N + + F+++ ++ L    LD    +++  +++ + 
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87

Query: 66  TREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLG 125
                         EI        +    ++ L    N +    P    N   L V+ L 
Sbjct: 88  E-------------EID---TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131

Query: 126 NNKIEDI 132
            N +  +
Sbjct: 132 RNDLSSL 138

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.9 bits (93), Expect = 9e-05
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 21/104 (20%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPET 88
             L  +D   N L+ +          ++   ISNNR                    +   
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-----------------LNLY 296

Query: 89  LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                 L+ L+ + N L+  V R+    + L+ + L +N I  +
Sbjct: 297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 339

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSK 91
            +L+ L   SN L  + L    ++    +S N  +  +   I  +  ++        +  
Sbjct: 171 TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS-TLAIPI-AVEELDASHNSINVVRG 228

Query: 92  G--SNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                L  L    N L  +    LLN   L  VDL  N++E I
Sbjct: 229 PVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKI 269

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 19/104 (18%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPET 88
             ++ L    N ++ L          + V ++  N  +              +P      
Sbjct: 99  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-------------SLP---RGI 142

Query: 89  LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                 L TL+ + N L      +     +LQ + L +N++  +
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 20/127 (15%)

Query: 10  VCRDIKI-QFGKNSFDGIKKLPWKNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRF 65
           V  D+ I    ++ + G + +   N + + F+++ ++ L    LD    +++  +++ + 
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 66  TREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLG 125
                         EI        +    ++ L    N +    P    N   L V+ L 
Sbjct: 82  E-------------EID---TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

Query: 126 NNKIEDI 132
            N +  +
Sbjct: 126 RNDLSSL 132

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 21/104 (20%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPET 88
             L  +D   N L+ +          ++   ISNNR                    +   
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-----------------LNLY 290

Query: 89  LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                 L+ L+ + N L+  V R+    + L+ + L +N I  +
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSK 91
            +L+ L   SN L  + L    ++    +S N  +  +   I  +  ++        +  
Sbjct: 165 TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS-TLAIPI-AVEELDASHNSINVVRG 222

Query: 92  G--SNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                L  L    N L  +    LLN   L  VDL  N++E I
Sbjct: 223 PVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKI 263

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 19/104 (18%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPET 88
             ++ L    N ++ L          + V ++  N  +              +P      
Sbjct: 93  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-------------SLP---RGI 136

Query: 89  LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                 L TL+ + N L      +     +LQ + L +N++  +
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 17/115 (14%), Positives = 32/115 (27%), Gaps = 17/115 (14%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIE-------- 80
             L  L  R   +  +          +KV  IS+  +   +         +         
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 81  ---IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
              +P      +     LR LN + N +       L     LQ + L   ++  +
Sbjct: 236 LTAVP---YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 19/104 (18%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPET 88
            NL  L  RSN L+ +        SN+    IS N+           +  +         
Sbjct: 80  FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-----------IVILL-----DYM 123

Query: 89  LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                NL++L    N+LV    R+     +L+ + L    +  I
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 19/103 (18%)

Query: 33  NLEYLDFRSNLLQGLFLDPSSNM---KVFLISNNRFTREIPCLICNLSTIEIPWPIPETL 89
               LD   N ++ L  D  ++    +   ++ N            +S +E     P   
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-----------IVSAVE-----PGAF 76

Query: 90  SKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
           +   NLRTL    N L            NL  +D+  NKI  +
Sbjct: 77  NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 12/103 (11%), Positives = 30/103 (29%), Gaps = 19/103 (18%)

Query: 33  NLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETL 89
           +LE L      L  +    L     + V  + +                  I      + 
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-------------AIR---DYSF 196

Query: 90  SKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
            +   L+ L  +    + ++  + L   NL  + + +  +  +
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 22/114 (19%), Positives = 52/114 (45%), Gaps = 13/114 (11%)

Query: 32  KNLEYLDFRSNLLQGL----FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI------ 81
           + LE+LDF+ + L+ +          N+    IS+         +   LS++E+      
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 82  ---PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                 +P+  ++  NL  L+ +  +L    P +  +  +LQV+++ +N+++ +
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 16/121 (13%)

Query: 15  KIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLF-LDPSSNMKVFLISNNRFTREIPCLI 73
            ++     F     L  K+L+ L F SN     F      +++   +S N          
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG--------- 358

Query: 74  CNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL 133
             LS         ++    ++L+ L+ + N ++ ++  + L  E L+ +D  ++ ++ + 
Sbjct: 359 --LSFKGCC---SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 134 H 134
            
Sbjct: 413 E 413

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 16/117 (13%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPW----- 83
            +L  L    N +Q L        S+++  +             I +L T++        
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 84  ----PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVV----DLGNNKIEDI 132
                +PE  S  +NL  L+ + N++       L     + ++    DL  N +  I
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 14/111 (12%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREI-PCLICNLSTIE------- 80
           +NL YLD      +       +  S+++V  ++ N F     P +   L  +        
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 81  -IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLL-NCENLQVVDLGNNKI 129
            +    P   +  S+L+ LN   N+L  SVP  +     +LQ + L  N  
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 19/103 (18%)

Query: 33  NLEYLDFRSNLLQGLF---LDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETL 89
           + + LD   N L+ L          ++V  +S              + TIE         
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-----------EIQTIE-----DGAY 72

Query: 90  SKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
              S+L TL   GN +      +     +LQ +      +  +
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 17/111 (15%), Positives = 42/111 (37%), Gaps = 12/111 (10%)

Query: 32  KNLEYLDFRSNLLQGL----FLDPSSNMKVFLISNNRFTREIPCLIC--NLSTIEIPW-- 83
             ++YLD + N +  +        S  ++   +  N    ++   +    L T+++    
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNK 202

Query: 84  --PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
              +       + +  ++   N+LV  + ++L   +NL+  DL  N     
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 32  KNLEYLDFRSNLLQGLF-LDPSSNMKVFLISNNRFTREIPCLI---------CNLSTIEI 81
             LE L+  SN+L     L+  S ++   ++NN    E+              N+S +  
Sbjct: 58  TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVS- 115

Query: 82  PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                   S+G   + +    N++             +Q +DL  N+I+ +
Sbjct: 116 -------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 19/111 (17%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCL-------ICNLSTIEI 81
            N++ LD   N L  +    L P + +++  +S+N    E   L         +L+   +
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV 92

Query: 82  PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                + L  G ++ TL+   N +   V  S       + + L NNKI  +
Sbjct: 93  -----QELLVGPSIETLHAANNNI-SRVSCSRGQ--GKKNIYLANNKITML 135

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 18/129 (13%)

Query: 21  NSFDGIKKLPWKNLEYLDFRSNLLQGLF---LDPSSNMKVFLISNNRFTREIPCLIC--- 74
           +    + K+    +  L      L             +K   + N++    +PC      
Sbjct: 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHL 333

Query: 75  -NLSTI--------EIPWPIPETLSKGSNLRTLNFNGNEL--VGSVPRSLLNCENLQVVD 123
            +L  +        E             +L+TL  + N L  +      LL  +NL  +D
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393

Query: 124 LGNNKIEDI 132
           +  N    +
Sbjct: 394 ISRNTFHPM 402

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 21/107 (19%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSS------NMKVFLISNNRFTREIPCLICNLSTIEIPWPI 85
           K+LE+LD   NL+   +L  S+      +++  ++S N            L ++      
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-----------LRSM---QKT 379

Query: 86  PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
            E L    NL +L+ + N     +P S    E ++ ++L +  I  +
Sbjct: 380 GEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIRVV 425

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPW----PIPE 87
           + + +L+  S  ++ +       ++V  +SNN         +  L  + I       +P+
Sbjct: 410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSLFLPRLQELYISRNKLKTLPD 468

Query: 88  TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKI 129
             S    L  +  + N+L            +LQ + L  N  
Sbjct: 469 A-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 13/116 (11%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTR-EIPCLICNLSTIE------- 80
            +LE+LD   N L  L   +  P S++K   +  N +    +  L  NL+ ++       
Sbjct: 74  GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 81  --IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH 134
                      +  ++L  L      L     +SL +  ++  + L  ++   +L 
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 9e-06
 Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 19/130 (14%)

Query: 21  NSFDGIKKLPWKNLEYLDFRSNLLQGL----FLDPSSNMKVFLISNNRFTREIPCLIC-- 74
           N    + K+       +    N L+ L    FL    ++++ +++ NRF+          
Sbjct: 391 NKLVTLPKINL-TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449

Query: 75  ------------NLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVV 122
                        L          +     S+L+ L  N N L    P    +   L+ +
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 123 DLGNNKIEDI 132
            L +N++  +
Sbjct: 510 SLNSNRLTVL 519

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 15/117 (12%), Positives = 34/117 (29%), Gaps = 20/117 (17%)

Query: 21  NSFDGIKKLPW--KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICN 75
             F  + ++P      E L    N ++ +          +++  + +      I      
Sbjct: 11  YRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID----- 65

Query: 76  LSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                      E      NLR L+   +++    P +     +L  + L    + D 
Sbjct: 66  ----------KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 18/105 (17%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPET 88
            NL  LD  S+ +  L         ++    +               LS   +       
Sbjct: 73  PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG-----------LSDAVLK---DGY 118

Query: 89  LSKGSNLRTLNFNGNELVG-SVPRSLLNCENLQVVDLGNNKIEDI 132
                 L  L+ + N++    +  S     +L+ +D  +N+I  +
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 19/104 (18%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPET 88
           K+L+ L+   N +  +         N++V  +S N                E+       
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-------------ELY---SSN 333

Query: 89  LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                 +  ++   N +     ++    E LQ +DL +N +  I
Sbjct: 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 10/108 (9%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSK 91
           + L+ LD R N L    +    ++    +S N+    +P +    + I +     E L  
Sbjct: 362 EKLQTLDLRDNALT--TIHFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDI 418

Query: 92  GS------NLRTLNFNGNELVGSVPRSLL-NCENLQVVDLGNNKIEDI 132
                   +L+ L  N N               +L+ + LG N ++  
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 3/122 (2%)

Query: 13  DIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCL 72
            +  +   +    +       LE LD   N          SN  +              +
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN-AISKSQAFSLILAHHIM 243

Query: 73  ICNLSTIEIPWPIPETLS--KGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE 130
                   I  P   T +    S++R L+ +   +     R     ++L+V++L  NKI 
Sbjct: 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

Query: 131 DI 132
            I
Sbjct: 304 KI 305

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 19/118 (16%)

Query: 32  KNLEYLDFRSNLLQGL----FLDPSSNMKVFLISNNRFTREIPCLIC------------- 74
            +L+ L    N             + +++   +  N         +C             
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485

Query: 75  NLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
            L+   +    P   S  + LR L+ N N L       L    NL+++D+  N++   
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAP 541

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 13/106 (12%), Positives = 38/106 (35%), Gaps = 21/106 (19%)

Query: 32  KNLEYLDFRSNLLQGLFLD-----PSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIP 86
            ++    F  + ++    +       S+++   +S+             + ++       
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-----------FVFSLN-----S 283

Query: 87  ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                  +L+ LN   N++      +    +NLQV++L  N + ++
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 20/117 (17%)

Query: 19  GKNSFDGIKKLPWKNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICN 75
            +    GI K   + L  L    N +Q +    L   S +    + +N+           
Sbjct: 180 SEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ----------- 228

Query: 76  LSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
           +  IE       +LS    LR L+ + N+L   VP  L + + LQVV L  N I  +
Sbjct: 229 IRMIE-----NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 16/140 (11%), Positives = 34/140 (24%), Gaps = 22/140 (15%)

Query: 16  IQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSS-------NMKVFLISNNRFTRE 68
           ++    +   + +    +L  L+ R+          +         +KV  I+       
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164

Query: 69  IPCLICNLSTIEI----------PWPIPETLSKG--SNLRTLNFNGNE---LVGSVPRSL 113
               +     +               +   L       L+ L           G      
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 114 LNCENLQVVDLGNNKIEDIL 133
                LQ +DL +N + D  
Sbjct: 225 AARVQLQGLDLSHNSLRDAA 244

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 22/120 (18%), Positives = 35/120 (29%), Gaps = 22/120 (18%)

Query: 32  KNLEYLDFRSNLLQG-------LFLDPSSNMKVFLISNNRFTR---EIPCLICNLSTIEI 81
             L  LD   N   G       L       ++V  + N            L      ++ 
Sbjct: 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG 232

Query: 82  ---------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                          +    S L +LN +   L   VP+ L     L V+DL  N+++  
Sbjct: 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN 289

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 23/113 (20%)

Query: 21  NSFDGIKKLPWKNLEYLDFRSNLLQGLF-LDPSSNMKVFLISNNRFTREIPCLICNLSTI 79
            S  GI+ LP  N+  L    N L  +  L    N+    +  N+           +  +
Sbjct: 56  KSVQGIQYLP--NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK-----------IKDL 102

Query: 80  EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                   +L     L++L+   N +  S    L++   L+ + LGNNKI DI
Sbjct: 103 S-------SLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKITDI 146

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 23/113 (20%), Positives = 39/113 (34%), Gaps = 23/113 (20%)

Query: 21  NSFDGIKKLPWKNLEYLDFRSNLLQGL-FLDPSSNMKVFLISNNRFTREIPCLICNLSTI 79
                +K L    L+ L    N +  +  L     ++   + NN            ++ I
Sbjct: 100 KDLSSLKDLK--KLKSLSLEHNGISDINGLVHLPQLESLYLGNN-----------KITDI 146

Query: 80  EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                    LS+ + L TL+   N++  S    L     LQ + L  N I D+
Sbjct: 147 T-------VLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISDL 190

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.3 bits (96), Expect = 3e-05
 Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 20/133 (15%)

Query: 1   MLEEEVTQEVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGL-FLDPSSNMKVFL 59
            L+            ++      + + K+ + ++  L      L  L  L+    +    
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLD 469

Query: 60  ISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENL 119
           +S+NR                    +P  L+    L  L  + N L  +V   + N   L
Sbjct: 470 LSHNRLRA-----------------LPPALAALRCLEVLQASDNALE-NVD-GVANLPRL 510

Query: 120 QVVDLGNNKIEDI 132
           Q + L NN+++  
Sbjct: 511 QELLLCNNRLQQS 523

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 15/118 (12%), Positives = 38/118 (32%), Gaps = 10/118 (8%)

Query: 15  KIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLIC 74
            +       + ++      L+ +D                    L       R +     
Sbjct: 394 ALDPLLYEKETLQYF--STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK 451

Query: 75  NLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
           +L+ +         L +   +  L+ + N L  ++P +L     L+V+   +N +E++
Sbjct: 452 DLTVLC-------HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV 501

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 14/112 (12%)

Query: 32  KNLEYLDFRSNLLQGL----FLDPSSNMKVFLISNNRFTREIPCLIC-------NLSTIE 80
             ++YLD + N +  +        S  ++   +  N    ++   +        +LS+ +
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNK 202

Query: 81  IPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
           + + +       + +  ++   N+LV  + ++L   +NL+  DL  N     
Sbjct: 203 LAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 32  KNLEYLDFRSNLLQGLF-LDPSSNMKVFLISNNRFTREIPCLI---------CNLSTIEI 81
             LE L+  SN+L     L+  S ++   ++NN    E+              N+S +  
Sbjct: 58  TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVS- 115

Query: 82  PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                   S+G   + +    N++             +Q +DL  N+I+ +
Sbjct: 116 -------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 23/113 (20%)

Query: 21  NSFDGIKKLPWKNLEYLDFRSNLLQGL-FLDPSSNMKVFLISNNRFTREIPCLICNLSTI 79
           ++   +  L    L  L+   N L+ +  +    N+    +  N  +   P         
Sbjct: 278 SNISPLAGL--TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--------- 326

Query: 80  EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                    +S  + L+ L F  N++  S   SL N  N+  +  G+N+I D+
Sbjct: 327 ---------VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDL 368

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 23/113 (20%)

Query: 21  NSFDGIKKLPWKNLEYLDFRSNLLQGL-FLDPSSNMKVFLISNNRFTREIPCLICNLSTI 79
            S DG++ L   NL  ++F +N L  +  L   + +   L++NN+     P         
Sbjct: 59  KSIDGVEYL--NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--------- 107

Query: 80  EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                    L+  +NL  L    N++    P  L N  NL  ++L +N I DI
Sbjct: 108 ---------LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI 149

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 7/106 (6%)

Query: 32  KNLEYLDFRSNLLQGL-FLDPSSNMKVFLISNNRFTREIPCLIC-NLSTIEIPW---PIP 86
             LE LD  SN +  +  L   +N++  + +NN+ +   P  I  NL  + +        
Sbjct: 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 236

Query: 87  ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
            TL+  +NL  L+   N++    P  L     L  + LG N+I +I
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 20/101 (19%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSK 91
            +L+ L F + +     L   + ++   IS+N+ +                      L+K
Sbjct: 156 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS------------------DISVLAK 197

Query: 92  GSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
            +NL +L    N++    P  L    NL  + L  N+++DI
Sbjct: 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI 236

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 23/113 (20%)

Query: 26  IKKLPW---KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLICNLSTI 79
           I  +P     +L  L    N +  +    L   +N+    +S N            +S +
Sbjct: 183 ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-----------ISAV 231

Query: 80  EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
           +       +L+   +LR L+ N N+LV  VP  L + + +QVV L NN I  I
Sbjct: 232 D-----NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 16/113 (14%)

Query: 33  NLEYLDFRSNLLQGLFLDPS-----SNMKVFLISNNRFTREIPCLICNLSTI-------- 79
            +  ++  +N L+   ++         +    I++   T     L  +L+ +        
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT 205

Query: 80  EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
           ++      +L   +NL  L  + N +      SL N  +L+ + L NNK+  +
Sbjct: 206 KVD---AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 18/103 (17%)

Query: 33  NLEYLDFRSNLLQGLF---LDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETL 89
           +   L+  SN LQ L     D  + +    +S+N            LS         ++ 
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-----------GLSFKGCC---SQSD 74

Query: 90  SKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
              ++L+ L+ + N ++ ++  + L  E L+ +D  ++ ++ +
Sbjct: 75  FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 116

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 22/118 (18%)

Query: 32  KNLEYLDFRSNLLQGL---FLDPSSNMKVFLISNNRFTREIPCLI--------------C 74
           +NL YLD      +       +  S+++V  ++ N F       I              C
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 75  NLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
            L  +      P   +  S+L+ LN + N              +LQV+D   N I   
Sbjct: 186 QLEQLS-----PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETL-- 89
             L +LD  SN L  + + P + +  F  S N  T      +  L+T+         +  
Sbjct: 212 IQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDL 271

Query: 90  SKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
           +  + L      G   +  +   + +   L ++D     I ++
Sbjct: 272 THNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITEL 312

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 4/103 (3%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETL-- 89
            NL YL   SN L  L + P + +       N+ T+        L+ +         +  
Sbjct: 85  TNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDV 144

Query: 90  SKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
           S  + L  L+ + N+ +  +   +     L  +D   NKI ++
Sbjct: 145 SHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL 185

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 20/98 (20%)

Query: 32  KNLEYLDFRSN-LLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLS 90
           K+L  L+  SN L   +F      +KV  + +N+                    IP+ + 
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-----------------IPKQVV 441

Query: 91  KGSNLRTLNFNGNELVGSVPRSLL-NCENLQVVDLGNN 127
           K   L+ LN   N+L  SVP  +     +LQ + L  N
Sbjct: 442 KLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTN 478

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 5/114 (4%)

Query: 20  KNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTI 79
           + +   ++    +    L+  +  L  L   P  +++  + S N  T E+P L  +L ++
Sbjct: 59  EMAVSRLRDCLDRQAHELELNNLGLSSLPELPP-HLESLVASCNSLT-ELPELPQSLKSL 116

Query: 80  EIPWPIPETLSK-GSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
            +     + LS     L  L  + N+L   +P  L N   L+++D+ NN ++ +
Sbjct: 117 LVDNNNLKALSDLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKKL 168

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 15/116 (12%)

Query: 21  NSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIE 80
           N F G+ +LP  NL YL+  SN ++ L   P  +++   +SNN+   E+P L   L  + 
Sbjct: 287 NIFSGLSELP-PNLYYLNASSNEIRSLCDLP-PSLEELNVSNNKLI-ELPALPPRLERLI 343

Query: 81  IP----WPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                   +PE      NL+ L+   N L    P    + E+L++    N+ + ++
Sbjct: 344 ASFNHLAEVPELP---QNLKQLHVEYNPLR-EFPDIPESVEDLRM----NSHLAEV 391

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 7/104 (6%)

Query: 32  KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLI--CNLSTIEIPW-PIPET 88
             L+ +D  +N L+ L   P  +++     NN+   E+P L     L+ I      + + 
Sbjct: 153 SFLKIIDVDNNSLKKLPDLPP-SLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLKKL 210

Query: 89  LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                +L ++    N L       L N   L  +   NN ++ +
Sbjct: 211 PDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKTL 252

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 10/103 (9%)

Query: 33  NLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLI---CNLSTIEIPWPIPETL 89
           +LE  +   + ++ L LD S + +  L        E+  L      L++I         L
Sbjct: 8   HLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-------L 60

Query: 90  SKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
            K + L+ L  + N + G +      C NL  ++L  NKI+D+
Sbjct: 61  PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 87  ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
           +       L+TL  N N +            +L  + L NN + ++
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 87  ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
             L K   L+ L  + N + G +        NL  ++L  NK++DI
Sbjct: 65  SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 21/107 (19%)

Query: 23  FDGIKKLPWKNLEYLDFRSNLLQ-GLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI 81
           +D       +++  L+  SN+L   +F      +KV  + NNR                 
Sbjct: 420 YDRTCAWA-ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS-------------- 464

Query: 82  PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLL-NCENLQVVDLGNN 127
              IP+ ++    L+ LN   N+L  SVP  +     +LQ + L +N
Sbjct: 465 ---IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 18/116 (15%)

Query: 32  KNLEYLDFRSNLLQGLFL---DPSSNMKVFLISNNRFT------------REIPCLICNL 76
            +  +L+F  N+              ++  ++  N                 +  L  +L
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412

Query: 77  STIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
           +++        T +   ++  LN + N L GSV R L     ++V+DL NN+I  I
Sbjct: 413 NSLN-SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI 465

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 37.4 bits (86), Expect = 5e-04
 Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 1/49 (2%)

Query: 85  IPETLSKGSNLRTLNFNGNELVGSVPR-SLLNCENLQVVDLGNNKIEDI 132
               L    NL  L     + +  +    L     L+ + +  + +  +
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.82
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.77
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.76
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.75
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.75
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.74
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.71
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.7
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.7
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.7
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.68
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.68
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.68
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.68
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.68
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.67
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.67
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.67
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.66
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.65
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.65
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.64
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.64
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.64
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.64
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.64
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.64
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.64
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.64
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.63
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.63
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.63
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.63
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.62
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.62
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.61
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.61
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.6
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.6
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.6
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.6
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.59
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.59
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.59
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.58
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.58
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.57
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.57
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.57
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.55
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.55
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.54
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.54
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.53
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.53
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.52
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.52
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.51
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.5
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.48
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.47
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.47
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.46
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.44
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.44
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.44
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.43
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.41
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.4
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.33
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.31
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.25
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.25
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.24
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.22
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.1
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.02
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.02
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.98
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.86
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.78
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.58
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.48
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.32
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.28
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.23
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.86
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.41
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.38
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.38
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.28
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.22
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.13
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.06
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.17
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.57
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.31
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	94.34

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.82  E-value=6.7e-20  Score=138.68  Aligned_cols=82  Identities=24%  Similarity=0.370  Sum_probs=60.7

Q ss_pred             CCccEEEcccCccccccCccccCCCCccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEc
Q 045549           53 SNMKVFLISNNRFTREIPCLICNLSTIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDL  124 (134)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l  124 (134)
                      +++++||+++|++++.+|..++.++.|+.        .+.+|..++.+++|+.|++++|+++|.+|..+.++++|++|++
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  711 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL  711 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence            34666777777777777777777666665        4467777777777777787777777777777777777888888


Q ss_pred             CCCcccccCC
Q 045549          125 GNNKIEDILH  134 (134)
Q Consensus       125 ~~n~l~~~~~  134 (134)
                      ++|+++|.||
T Consensus       712 s~N~l~g~iP  721 (768)
T 3rgz_A          712 SNNNLSGPIP  721 (768)
T ss_dssp             CSSEEEEECC
T ss_pred             cCCcccccCC
Confidence            8888877776

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.79  E-value=2e-18  Score=111.12  Aligned_cols=121  Identities=17%  Similarity=0.104  Sum_probs=100.3

Q ss_pred             ccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCC--C--CCCccEEEcccCccccccCccccCCCCccc-------
Q 045549           13 DIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLD--P--SSNMKVFLISNNRFTREIPCLICNLSTIEI-------   81 (134)
Q Consensus        13 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~--~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------   81 (134)
                      -+.+++++|.++.+|..+..+++.|++++|.+++..+.  .  ++.|++|++++|.+++..|..+..+.+|+.       
T Consensus        10 ~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            36788888888888887777888888888888877654  2  788888888888888777888888777776       


Q ss_pred             -cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549           82 -PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        82 -~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                       ....+..++.+++|+.|++++|++++..|..+..+++|+.|++++|.+++..
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence             2334556888999999999999999888889999999999999999998653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=4.4e-18  Score=113.45  Aligned_cols=127  Identities=17%  Similarity=0.197  Sum_probs=83.7

Q ss_pred             ccccCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCc
Q 045549            6 VTQEVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTI   79 (134)
Q Consensus         6 ~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L   79 (134)
                      .+..+++|+.|++++|.+++++...   .++|++|++++|.+++..+..   +++|++|++++|++++..+..+..+.+|
T Consensus        54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  133 (251)
T 3m19_A           54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL  133 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence            4556677777777777776654432   267777777777777655443   6677777777777775555555666666


Q ss_pred             cc-------cccCCc-cCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           80 EI-------PWPIPE-TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        80 ~~-------~~~~~~-~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                      +.       ...++. .++.+++|+.|++++|.+++..+..+..+++|+.+++++|.+++.
T Consensus       134 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            55       223333 566777788888888877755455677777788888888777653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.78  E-value=1.6e-18  Score=131.19  Aligned_cols=128  Identities=22%  Similarity=0.364  Sum_probs=95.3

Q ss_pred             cccCCcccEEEcCCCccCC-CCcccc--cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCcc
Q 045549            7 TQEVCRDIKIQFGKNSFDG-IKKLPW--KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIE   80 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~-~~~~~~--~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~   80 (134)
                      +..+++|+.|++++|.+++ +|..+.  ++|+.|++++|.+++..|..   +++|++|++++|++++.+|..+..+++|+
T Consensus       414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  493 (768)
T 3rgz_A          414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN  493 (768)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence            3456677777777777765 555442  67777777777777666654   67788888888887777777777777776


Q ss_pred             c--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549           81 I--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH  134 (134)
Q Consensus        81 ~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  134 (134)
                      .        .+.+|.+++.+++|+.|++++|.+.+.+|..++++++|+.|++++|.++|.+|
T Consensus       494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred             EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence            6        34677777888888888888888887788888888888888888888887776

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.78  E-value=1.6e-18  Score=119.11  Aligned_cols=124  Identities=16%  Similarity=0.179  Sum_probs=71.8

Q ss_pred             CCcccEEEcCCCccCC-CCcccc--c-CCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-
Q 045549           10 VCRDIKIQFGKNSFDG-IKKLPW--K-NLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-   81 (134)
Q Consensus        10 ~~~L~~L~l~~n~l~~-~~~~~~--~-~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-   81 (134)
                      +++|++|++++|.+++ +|..+.  . +++.|++++|.+++..|..   +. |++|++++|.+++..|..+..+++|+. 
T Consensus       148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  226 (313)
T 1ogq_A          148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI  226 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred             CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence            3444444444444432 333332  1 4444444444444333332   22 555555555555455555555555544 


Q ss_pred             ------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549           82 ------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH  134 (134)
Q Consensus        82 ------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  134 (134)
                            ....+..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.++|.+|
T Consensus       227 ~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             ECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             ECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence                  11123336667888888888888887888888888888888888888888776

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=7.9e-18  Score=111.02  Aligned_cols=122  Identities=16%  Similarity=0.134  Sum_probs=99.8

Q ss_pred             CcccEEEcCCCccCCCCc-cc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549           11 CRDIKIQFGKNSFDGIKK-LP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~~-~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      ++|+.|++++|.+++++. .+  .++|+.|++++|.++...+..   ++.|++|++++|++++..+..+..+.+|+.   
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            688999999999988644 33  388999999999998765543   789999999999999666666777777776   


Q ss_pred             ----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           82 ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 ----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                          ...+|..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+++.
T Consensus       120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence                446788888899999999999999955456788999999999999988753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=9.6e-18  Score=113.06  Aligned_cols=126  Identities=17%  Similarity=0.113  Sum_probs=74.4

Q ss_pred             ccCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc
Q 045549            8 QEVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI   81 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~   81 (134)
                      ..+++|++|++++|.+++++...   .++|++|++++|.+++..+..   +++|++|++++|.+++..+..+..+++|+.
T Consensus        82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  161 (272)
T 3rfs_A           82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE  161 (272)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCE
Confidence            34556666666666665544432   256666666666666554432   566666666666666444444555555554


Q ss_pred             --------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549           82 --------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        82 --------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                              ....+..++.+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus       162 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  221 (272)
T 3rfs_A          162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  221 (272)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             EECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence                    1222333566677777777777777555555667777777777777666544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=6.6e-18  Score=110.80  Aligned_cols=121  Identities=17%  Similarity=0.210  Sum_probs=92.3

Q ss_pred             CcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549           11 CRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      ++++.|++++|.+++++...   +++|+.|++++|++++..+..   +++|++|++++|+++...+..+..+.+|+.   
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            47888888888888766543   278888888888888776654   788888888888888554555677777766   


Q ss_pred             -----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           82 -----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 -----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                           ....+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+..
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence                 23345677888889999999998886555678888889999998888753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.77  E-value=3.3e-18  Score=118.28  Aligned_cols=63  Identities=14%  Similarity=0.166  Sum_probs=32.9

Q ss_pred             CCcccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccc
Q 045549           10 VCRDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLI   73 (134)
Q Consensus        10 ~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~   73 (134)
                      +++|++|++++|.++.+|..+  .++|++|++++|.++.. |..   +++|++|++++|++.+.+|..+
T Consensus       103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~~p~~~  170 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPL  170 (328)
T ss_dssp             GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred             CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEEECCCCCCccccChhH
Confidence            555666666666655555543  25556666666555532 222   4555555555554444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.77  E-value=1.9e-17  Score=111.41  Aligned_cols=126  Identities=19%  Similarity=0.251  Sum_probs=61.4

Q ss_pred             ccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCc
Q 045549            6 VTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTI   79 (134)
Q Consensus         6 ~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L   79 (134)
                      .+..+++|++|++++|.++.++...+   ++|++|++++|.+++..+..   +++|++|++++|.+++..+..+..+++|
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  135 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL  135 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence            34455556666666655555544332   55555555555555443322   4555555555555554444444444444


Q ss_pred             cc-------cccCCc-cCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           80 EI-------PWPIPE-TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        80 ~~-------~~~~~~-~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      +.       ...++. .++.+++|+.|++++|.+++..+..+.++++|+.|++++|.+++
T Consensus       136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence            44       111222 24445555555555555553323334455555555555555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.77  E-value=4.6e-18  Score=125.19  Aligned_cols=129  Identities=18%  Similarity=0.265  Sum_probs=107.2

Q ss_pred             cccccCC-cccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCC
Q 045549            5 EVTQEVC-RDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLS   77 (134)
Q Consensus         5 ~~~~~~~-~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~   77 (134)
                      ++|+++| ++++|++++|.+++++...   +++|++|++++|.++++.+..   +++|++|++++|++++..+..|..+.
T Consensus        45 ~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~  124 (635)
T 4g8a_A           45 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS  124 (635)
T ss_dssp             SCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred             ccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence            4566665 7999999999999977643   389999999999999876654   89999999999999966667788888


Q ss_pred             Cccc-------cccCC-ccCcCCCCCcEEEccCCcccc-CccccccCCCCCcEEEcCCCcccccC
Q 045549           78 TIEI-------PWPIP-ETLSKGSNLRTLNFNGNELVG-SVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        78 ~L~~-------~~~~~-~~~~~~~~L~~l~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                      +|+.       ...++ ..++.+++|+.|++++|.+++ ..|..+..+++|+.|++++|++++..
T Consensus       125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence            8887       23344 468899999999999999985 35778999999999999999998753

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.76  E-value=2.1e-17  Score=110.20  Aligned_cols=123  Identities=17%  Similarity=0.269  Sum_probs=100.3

Q ss_pred             CcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549           11 CRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      +.++.|++++|.+++++...   +++|++|++++|.+++..+..   +++|++|++++|++++..+..+..+.+|+.   
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            47889999999998865543   388999999999999877654   889999999999999766677788877776   


Q ss_pred             ----cccCC-ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549           82 ----PWPIP-ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        82 ----~~~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                          ...++ ..++.+++|+.|++++|.+++..+..+.++++|+.|++++|.+++..
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence                22344 34688999999999999999555557999999999999999998754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.76  E-value=4.6e-18  Score=117.54  Aligned_cols=82  Identities=18%  Similarity=0.193  Sum_probs=50.0

Q ss_pred             CCCccEEEcccCccccccCccccCCCCccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEE
Q 045549           52 SSNMKVFLISNNRFTREIPCLICNLSTIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVD  123 (134)
Q Consensus        52 l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~  123 (134)
                      +++|++|++++|.++ .+|..+..+++|+.        .+.+|..++.+++|+.|++++|.+.+.+|..+.++++|+.|+
T Consensus       205 l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  283 (328)
T 4fcg_A          205 LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD  283 (328)
T ss_dssp             CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred             CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence            445555555555555 34444554444444        334556666667777777777666666666677777777777


Q ss_pred             cCCCcccccCC
Q 045549          124 LGNNKIEDILH  134 (134)
Q Consensus       124 l~~n~l~~~~~  134 (134)
                      +++|.+.+.+|
T Consensus       284 L~~n~~~~~iP  294 (328)
T 4fcg_A          284 LRGCVNLSRLP  294 (328)
T ss_dssp             CTTCTTCCCCC
T ss_pred             CCCCCchhhcc
Confidence            77777666655

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=1.1e-17  Score=109.73  Aligned_cols=121  Identities=15%  Similarity=0.212  Sum_probs=97.1

Q ss_pred             cccEEEcCCCccCCC-Cccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549           12 RDIKIQFGKNSFDGI-KKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~-~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      .++.|++++|.++++ +...   +++|+.|++++|.+++..+..   +++|++|++++|.+++..+..+..+++|+.   
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            567889999998885 4332   388999999999988876643   888999999999998777777888887776   


Q ss_pred             -----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           82 -----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 -----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                           ....|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence                 233467788889999999999999976688889999999999999988753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=1.5e-17  Score=109.11  Aligned_cols=123  Identities=14%  Similarity=0.112  Sum_probs=106.4

Q ss_pred             cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccCccccCCCCccc------
Q 045549           12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIPCLICNLSTIEI------   81 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------   81 (134)
                      .-+.+++++|.++.+|..+...++.|++++|.+++..+..    +++|++|++++|.+++..+..+..+.+|+.      
T Consensus        12 ~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           12 EGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            3468999999999999988888999999999999875542    899999999999999777778988888877      


Q ss_pred             --cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549           82 --PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH  134 (134)
Q Consensus        82 --~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  134 (134)
                        ....+..++.+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..|
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence              22334568899999999999999997778899999999999999999988754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.76  E-value=2.9e-18  Score=117.75  Aligned_cols=47  Identities=23%  Similarity=0.288  Sum_probs=22.7

Q ss_pred             CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549           86 PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        86 ~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                      |..++.+++|+.|++++|.+++..|. +..+++|+.|++++|.++|.+
T Consensus       214 ~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~  260 (313)
T 1ogq_A          214 SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL  260 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECC
T ss_pred             CHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcC
Confidence            33444445555555555555433222 444555555555555555444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=4e-17  Score=105.91  Aligned_cols=124  Identities=17%  Similarity=0.156  Sum_probs=100.2

Q ss_pred             CcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549           11 CRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      ++++.|++++|.+++++...   +++|++|++++|++++..+..   +++|++|++++|.+++..+..+..+++|+.   
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            47899999999998877654   388999999999998776543   789999999999999666666777777776   


Q ss_pred             ----cccCC-ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549           82 ----PWPIP-ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH  134 (134)
Q Consensus        82 ----~~~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  134 (134)
                          ...++ ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence                22333 457889999999999999996555568999999999999999877543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.75  E-value=4.6e-17  Score=109.57  Aligned_cols=130  Identities=16%  Similarity=0.162  Sum_probs=107.4

Q ss_pred             ccccccccCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccC
Q 045549            2 LEEEVTQEVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICN   75 (134)
Q Consensus         2 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~   75 (134)
                      ++..++..+++|++|++++|.++.++...   .++|++|++++|.+++..+..   +++|++|++++|.+++..+..+..
T Consensus        76 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  155 (270)
T 2o6q_A           76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK  155 (270)
T ss_dssp             CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC
Confidence            45566788999999999999999877654   389999999999999877654   899999999999999666666788


Q ss_pred             CCCccc-------cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           76 LSTIEI-------PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        76 l~~L~~-------~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      +++|+.       ...+ +..+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+..
T Consensus       156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            888777       2233 3457889999999999999995545568899999999999998854

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.75  E-value=3.9e-17  Score=110.05  Aligned_cols=127  Identities=20%  Similarity=0.226  Sum_probs=103.0

Q ss_pred             cccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-   81 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-   81 (134)
                      +..+++|++|++++|.+++++... +++|++|++++|.+++..+..   +++|++|++++|++++..+..+..+++|+. 
T Consensus        59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  138 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL  138 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence            456889999999999998765322 388999999999999876643   889999999999999777777788887777 


Q ss_pred             ------cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549           82 ------PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        82 ------~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                            ...+ +..++.+++|+.|++++|.+++..+..+.++++|+.|++++|.+++..
T Consensus       139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence                  2233 345688999999999999999666667899999999999999998764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.74  E-value=3.6e-17  Score=110.70  Aligned_cols=43  Identities=16%  Similarity=0.176  Sum_probs=21.9

Q ss_pred             CcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           89 LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        89 ~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      +..+++|+.|++++|.+.+..|..+.++++|+.|++++|.+++
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  215 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence            4444555555555555554444455555555555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=4.5e-17  Score=106.81  Aligned_cols=121  Identities=15%  Similarity=0.175  Sum_probs=106.0

Q ss_pred             ccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-------c
Q 045549           13 DIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-------P   82 (134)
Q Consensus        13 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~   82 (134)
                      -+.++++++.++.+|..+..+++.|++++|.+++..+..   +++|++|++++|.+++..|..+..+.+|+.       .
T Consensus        13 ~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             TTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             CCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            467999999999999988899999999999999876644   889999999999999888999999988887       3


Q ss_pred             ccCCc-cCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549           83 WPIPE-TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        83 ~~~~~-~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                      ..+|. .+..+++|+.|++++|.+++..|..|.++++|+.|++++|.+++..
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  144 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA  144 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence            34454 4688999999999999999777888999999999999999998754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.74  E-value=4.5e-17  Score=110.25  Aligned_cols=125  Identities=18%  Similarity=0.204  Sum_probs=52.1

Q ss_pred             cccCCcccEEEcCCCccCCC-Cccc--ccCCcEEEccCcc-cCCcCCCC---CCCccEEEcccCccccccCccccCCCCc
Q 045549            7 TQEVCRDIKIQFGKNSFDGI-KKLP--WKNLEYLDFRSNL-LQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTI   79 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~-l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L   79 (134)
                      +..+++|+.|++++|.++++ +..+  .++|++|++++|. ++...+..   +++|++|++++|.+++..+..+..+++|
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  131 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL  131 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence            34444555555555544442 2222  1444445554443 33332222   4444444444444443334444444444


Q ss_pred             cc-------cccCC-ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           80 EI-------PWPIP-ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        80 ~~-------~~~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      +.       ...++ ..++.+++|+.|++++|.+++..+..+.++++|+.|++++|.+++
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            33       11111 223444444444444444442222234444444444444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.73  E-value=6.2e-17  Score=119.29  Aligned_cols=123  Identities=20%  Similarity=0.220  Sum_probs=102.5

Q ss_pred             CcccEEEcCCCccCCCCc-cc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549           11 CRDIKIQFGKNSFDGIKK-LP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~~-~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      ++++.|++++|.+++++. .+  +++|++|++++|.+++..|..   ++.|++|++++|.+++..|..++.+++|+.   
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            578999999999988655 33  388999999999998876654   889999999999999777889998888887   


Q ss_pred             ----c-ccCCccCcCCCCCcEEEccCCcccc-CccccccCCCCCcEEEcCCCcccccC
Q 045549           82 ----P-WPIPETLSKGSNLRTLNFNGNELVG-SVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        82 ----~-~~~~~~~~~~~~L~~l~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                          . ...+..++.+++|+.|++++|.+.+ .+|..++++++|+.|++++|.+++..
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~  169 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT  169 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence                1 2233678899999999999999985 46889999999999999999988754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.72  E-value=9.5e-17  Score=108.19  Aligned_cols=127  Identities=18%  Similarity=0.246  Sum_probs=100.0

Q ss_pred             ccccCC-cccEEEcCCCccCCCCcc-c--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCC
Q 045549            6 VTQEVC-RDIKIQFGKNSFDGIKKL-P--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLST   78 (134)
Q Consensus         6 ~~~~~~-~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~   78 (134)
                      +|..++ +++.|++++|.+++++.. +  ++++++|++++|.+++..+..   +++|++|++++|.+++..+..+..+.+
T Consensus        22 ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (276)
T 2z62_A           22 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  101 (276)
T ss_dssp             CCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             cCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence            333333 689999999999886653 3  388999999999988766543   789999999999998777788888887


Q ss_pred             ccc-------cccC-CccCcCCCCCcEEEccCCccccC-ccccccCCCCCcEEEcCCCccccc
Q 045549           79 IEI-------PWPI-PETLSKGSNLRTLNFNGNELVGS-VPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        79 L~~-------~~~~-~~~~~~~~~L~~l~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                      |+.       ...+ +..++.+++|+.|++++|.+.+. +|..+.++++|+.|++++|.+++.
T Consensus       102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            776       1223 33578889999999999999853 588899999999999999988764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.72  E-value=9.6e-17  Score=101.43  Aligned_cols=105  Identities=18%  Similarity=0.164  Sum_probs=91.6

Q ss_pred             cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccccccCCcc
Q 045549           12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPET   88 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~   88 (134)
                      ..+.+++++|.++.+|..+..++++|++++|.+++..+..   ++.|++|++++|+++ .++               +..
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~---------------~~~   73 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLP---------------AGV   73 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCC---------------TTT
T ss_pred             CCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccC---------------hhh
Confidence            5678999999999999988899999999999999987764   889999999999998 333               445


Q ss_pred             CcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           89 LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        89 ~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                      +..+++|+.|++++|++++..+..+.++++|+.|++++|.+++.
T Consensus        74 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           74 FDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            67889999999999999965555799999999999999998754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=1.4e-16  Score=108.49  Aligned_cols=124  Identities=22%  Similarity=0.197  Sum_probs=67.7

Q ss_pred             cccCCcccEEEcCCCccCCCCcc-cccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc--
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKL-PWKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI--   81 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--   81 (134)
                      +..+++|+.|++++|.+++++.. ..++|++|++++|+++......  +++|++|++++|++++..+..+..+.+|+.  
T Consensus        51 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~  130 (290)
T 1p9a_G           51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY  130 (290)
T ss_dssp             GTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred             hhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence            44555666666666665553332 2355666666666655432222  556666666666666444455555555554  


Q ss_pred             -----cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549           82 -----PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        82 -----~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                           ...+ +..+..+++|+.|++++|++++..+..+..+++|+.|++++|+++
T Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence                 1122 233455666666666666666332334556666666666666665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=1.6e-16  Score=100.77  Aligned_cols=121  Identities=17%  Similarity=0.140  Sum_probs=85.1

Q ss_pred             cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-------
Q 045549           12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-------   81 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------   81 (134)
                      ..+.++++++.++.+|.....+++.|++++|.+++..+..   +++|++|++++|++++..+..+..+.+|+.       
T Consensus         8 ~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            3456677777776666666667777777777766654432   566777777777776444445566655555       


Q ss_pred             cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           82 PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 ~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                      ...+ +..++.+++|+.+++++|.+++..+..+..+++|+.+++++|.+++.
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            1223 34568899999999999999954444578899999999999999875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=2e-16  Score=104.27  Aligned_cols=123  Identities=15%  Similarity=0.204  Sum_probs=105.2

Q ss_pred             CCcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-----
Q 045549           10 VCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-----   81 (134)
Q Consensus        10 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-----   81 (134)
                      .+.-+.++.+++.++.+|..+.+++++|++++|.+++..+..   ++.|++|++++|+++...+..+..+.+|+.     
T Consensus        18 ~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           18 SCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            456778999999999999988899999999999999987654   889999999999998555566788888777     


Q ss_pred             --cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549           82 --PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        82 --~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                        ...+ +..+..+++|+.|++++|.++ .+|..+.++++|+.|++++|.+++..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~  151 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP  151 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC
Confidence              2233 345788999999999999999 88999999999999999999998653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.71  E-value=2.4e-16  Score=101.52  Aligned_cols=118  Identities=15%  Similarity=0.163  Sum_probs=82.9

Q ss_pred             cEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc--------cc
Q 045549           14 IKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI--------PW   83 (134)
Q Consensus        14 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~   83 (134)
                      +.+++++|.++.+|..+..+++.|++++|.++.+....  ++.|++|++++|.+++..+..|..+.+|+.        ..
T Consensus        13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~   92 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC   92 (193)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence            45666666666666665566777777777666433222  666777777777766555555666666555        22


Q ss_pred             cCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           84 PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        84 ~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      ..+..+..+++|+.|++++|.++...+..|..+++|+.+++++|.+..
T Consensus        93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            335578889999999999999995444568999999999999998864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.70  E-value=1.9e-16  Score=108.09  Aligned_cols=44  Identities=25%  Similarity=0.252  Sum_probs=18.8

Q ss_pred             cCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           88 TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        88 ~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      .+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       194 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence            34444444444444444443222234444444444444444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.70  E-value=2.3e-16  Score=107.36  Aligned_cols=121  Identities=20%  Similarity=0.262  Sum_probs=84.4

Q ss_pred             CcccEEEcCCCccCCCCcc-c--ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc-----
Q 045549           11 CRDIKIQFGKNSFDGIKKL-P--WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI-----   81 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-----   81 (134)
                      +.++.|++++|.+++++.. +  +++|+.|++++|.+++..+.. +++|++|++++|.++ .+|..+..+++|+.     
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~  109 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF  109 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCS
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCC
Confidence            3566666666666654332 2  266777777777766654433 777888888888887 67777777777666     


Q ss_pred             --cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           82 --PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 --~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                        ...+ +..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++.
T Consensus       110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G          110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence              2233 35678888888899988888855555678888889999988888754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.70  E-value=2.2e-16  Score=112.81  Aligned_cols=124  Identities=16%  Similarity=0.111  Sum_probs=105.4

Q ss_pred             CcccEEEcCCCccCC-CCccc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549           11 CRDIKIQFGKNSFDG-IKKLP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~-~~~~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      ++|+.|++++|.+.+ .|..+  +++|+.|++++|.+++..+..   +++|++|++++|.+++..+..+..+++|+.   
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            689999999999988 45444  389999999999999876654   789999999999999777888888888877   


Q ss_pred             -----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549           82 -----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH  134 (134)
Q Consensus        82 -----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  134 (134)
                           ....|..++.+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence                 33457788999999999999999996545568999999999999999998765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.69  E-value=6e-16  Score=98.15  Aligned_cols=104  Identities=18%  Similarity=0.171  Sum_probs=89.4

Q ss_pred             cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccccccCCcc
Q 045549           12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPET   88 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~   88 (134)
                      .-+.+++++|.++.+|..+..++++|++++|.+++..|..   ++.|++|++++|++++ +|               +..
T Consensus        13 ~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~---------------~~~   76 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IP---------------TGV   76 (174)
T ss_dssp             CSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CC---------------TTT
T ss_pred             CCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cC---------------hhH
Confidence            4478999999999899988899999999999999987754   8899999999999983 33               345


Q ss_pred             CcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           89 LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        89 ~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      +..+++|+.|++++|++++..+..+..+++|+.|++++|.+..
T Consensus        77 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           77 FDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             hCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            6788999999999999995444469999999999999999864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.68  E-value=5.4e-16  Score=115.67  Aligned_cols=122  Identities=20%  Similarity=0.201  Sum_probs=80.2

Q ss_pred             CcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549           11 CRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      ++++.|++++|.+++++...   +++|++|++++|.+++..|..   ++.|++|++++|.+++..+..++.+.+|+.   
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            46777777777777755532   267777777777777665554   677777777777777443345666666665   


Q ss_pred             -----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           82 -----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 -----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                           ....+..++.+++|+.|++++|.+.+..|..+.++++|+.|++++|.+++.
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence                 122234566777777777777777765566667777777777777766553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.68  E-value=6.4e-16  Score=110.36  Aligned_cols=128  Identities=19%  Similarity=0.165  Sum_probs=75.6

Q ss_pred             cccccCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCC
Q 045549            5 EVTQEVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLST   78 (134)
Q Consensus         5 ~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~   78 (134)
                      +.+..+++|+.|++++|.++.++...   .++|++|++++|.++...+..   +++|++|++++|.++...+..+..+++
T Consensus        82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  161 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS  161 (440)
T ss_dssp             TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence            44566777777777777777655433   267777788777777655432   677777777777777555555555555


Q ss_pred             ccc--------cccCC-ccCcC----------------------CCCCcEEEccCCccccCccccccCCCCCcEEEcCCC
Q 045549           79 IEI--------PWPIP-ETLSK----------------------GSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN  127 (134)
Q Consensus        79 L~~--------~~~~~-~~~~~----------------------~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  127 (134)
                      |+.        ...++ ..+..                      +++|+.|++++|.+++..|..|.++++|+.|++++|
T Consensus       162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence            544        01111 13334                      445555555555555444555555666666666666


Q ss_pred             ccccc
Q 045549          128 KIEDI  132 (134)
Q Consensus       128 ~l~~~  132 (134)
                      .+++.
T Consensus       242 ~l~~~  246 (440)
T 3zyj_A          242 QIQVI  246 (440)
T ss_dssp             CCCEE
T ss_pred             ceeEE
Confidence            55543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.68  E-value=1.8e-16  Score=106.77  Aligned_cols=127  Identities=17%  Similarity=0.156  Sum_probs=94.5

Q ss_pred             cccccCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCC
Q 045549            5 EVTQEVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLST   78 (134)
Q Consensus         5 ~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~   78 (134)
                      ..+..+++|+.|++++|.+++++...   .++|++|++++|.+++..+..   +++|++|++++|.+.+..+..+..+++
T Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  125 (276)
T 2z62_A           46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (276)
T ss_dssp             TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred             hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence            35677899999999999998866533   388999999999988776544   788999999999998666667777777


Q ss_pred             ccc-------cc--cCCccCcCCCCCcEEEccCCccccCccccccCCCCCc----EEEcCCCcccc
Q 045549           79 IEI-------PW--PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQ----VVDLGNNKIED  131 (134)
Q Consensus        79 L~~-------~~--~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~----~L~l~~n~l~~  131 (134)
                      |+.       ..  .+|..++.+++|+.|++++|.+++..+..+..+.+++    .+++++|.+++
T Consensus       126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~  191 (276)
T 2z62_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF  191 (276)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred             CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence            776       11  2577888889999999999988855445555444443    55666665554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.68  E-value=1.5e-15  Score=98.52  Aligned_cols=122  Identities=15%  Similarity=0.186  Sum_probs=101.4

Q ss_pred             cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-------
Q 045549           12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-------   81 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------   81 (134)
                      .-+.++.+++.++.+|.....++++|++++|.+++..+..   +++|++|++++|++++..+..+..+++|+.       
T Consensus         8 ~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A            8 SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            3467899999999999888899999999999999876643   889999999999999666666777877777       


Q ss_pred             cccCC-ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549           82 PWPIP-ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        82 ~~~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                      ...++ ..++.+++|+.|++++|.+++..+..+.++++|+.|++++|.+++..
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  140 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP  140 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence            22333 45788999999999999999655566899999999999999998653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.68  E-value=5.2e-16  Score=105.89  Aligned_cols=127  Identities=17%  Similarity=0.154  Sum_probs=99.4

Q ss_pred             ccccCCcccEEEcCCCccCCCC-ccc--ccCCcEEEccCcccCC-cCCCC---CCCccEEEcccCccccccCccccCCCC
Q 045549            6 VTQEVCRDIKIQFGKNSFDGIK-KLP--WKNLEYLDFRSNLLQG-LFLDP---SSNMKVFLISNNRFTREIPCLICNLST   78 (134)
Q Consensus         6 ~~~~~~~L~~L~l~~n~l~~~~-~~~--~~~L~~L~l~~n~l~~-~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~   78 (134)
                      .+..+++|+.|++++|.+.+.+ ..+  .++|+.|++++|.+++ ..|..   +++|++|++++|.+++..|..+..+++
T Consensus       121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  200 (306)
T 2z66_A          121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  200 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence            4566778888888888877633 333  3788888888888876 33433   788999999999998777888888877


Q ss_pred             ccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCC-CCcEEEcCCCccccc
Q 045549           79 IEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCE-NLQVVDLGNNKIEDI  132 (134)
Q Consensus        79 L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~-~L~~L~l~~n~l~~~  132 (134)
                      |+.        ....+..+..+++|+.|++++|.+.+..|..+..++ +|+.|++++|.+++.
T Consensus       201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            776        222334678899999999999999988888899985 899999999999763

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.68  E-value=4.7e-16  Score=111.84  Aligned_cols=128  Identities=20%  Similarity=0.186  Sum_probs=78.2

Q ss_pred             cccccCCcccEEEcCCCccCCC-Cccc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCC
Q 045549            5 EVTQEVCRDIKIQFGKNSFDGI-KKLP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLST   78 (134)
Q Consensus         5 ~~~~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~   78 (134)
                      +.+..+++|+.|++++|.++++ |..+  .++|++|++++|.++...+..   +++|++|++++|.+.+..+..+..+.+
T Consensus        50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  129 (477)
T 2id5_A           50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN  129 (477)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence            3445566666677766666663 3333  266677777777666554432   566777777777776666666666666


Q ss_pred             ccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           79 IEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        79 L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                      |+.        ....+..++.+++|+.|++++|.+++..+..+.++++|+.|++++|.+++.
T Consensus       130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            655        222344566667777777777777644344566666666666666666543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.67  E-value=6.9e-16  Score=106.35  Aligned_cols=61  Identities=16%  Similarity=0.072  Sum_probs=29.3

Q ss_pred             ccccCCcccEEEcCCCccCCC-Ccccc--cCCcEEEccCcccCCcCCCCCCCccEEEcccCccc
Q 045549            6 VTQEVCRDIKIQFGKNSFDGI-KKLPW--KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFT   66 (134)
Q Consensus         6 ~~~~~~~L~~L~l~~n~l~~~-~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~   66 (134)
                      .+..+++|++|++++|.++++ |..+.  ++|++|++++|.++.......++|++|++++|.++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~  134 (330)
T 1xku_A           71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT  134 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCC
T ss_pred             hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCccc
Confidence            345556666666666666553 33331  55555555555555322221333444444444433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.67  E-value=7.8e-16  Score=107.54  Aligned_cols=120  Identities=18%  Similarity=0.255  Sum_probs=93.8

Q ss_pred             cccEEEcCCCccCCCCccc----ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549           12 RDIKIQFGKNSFDGIKKLP----WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      .++.|++++|.+++++...    .++|+.|++++|.+++..+..   +++|++|++++|++++..+..+..+.+|+.   
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            5788999999998865543    378899999999988876553   788999999999998666667787877776   


Q ss_pred             -----cccCCccCcCCCCCcEEEccCCccccCcccc-c---cCCCCCcEEEcCCCccccc
Q 045549           82 -----PWPIPETLSKGSNLRTLNFNGNELVGSVPRS-L---LNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 -----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~---~~l~~L~~L~l~~n~l~~~  132 (134)
                           ....+..+..+++|+.|++++|.++ .+|.. +   ..+++|+.|++++|+|++.
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence                 2234667888999999999999999 45554 4   5688999999999998753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.67  E-value=7.5e-16  Score=112.58  Aligned_cols=122  Identities=19%  Similarity=0.266  Sum_probs=98.5

Q ss_pred             CcccEEEcCCCccCCCCcc-c--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549           11 CRDIKIQFGKNSFDGIKKL-P--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      ++++.|++++|.+++++.. +  +++|++|++++|.+++..+..   ++.|++|++++|.+++..+..++.+++|+.   
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            3688999999999886543 3  388999999999988876554   789999999999998777788888888877   


Q ss_pred             ----cccCCc-cCcCCCCCcEEEccCCcccc-CccccccCCCCCcEEEcCCCccccc
Q 045549           82 ----PWPIPE-TLSKGSNLRTLNFNGNELVG-SVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 ----~~~~~~-~~~~~~~L~~l~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                          ...++. .++.+++|+.|++++|.+.+ .+|..++++++|+.|++++|.+++.
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence                223333 57888999999999999886 3688899999999999999988764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.67  E-value=9.7e-16  Score=109.77  Aligned_cols=128  Identities=18%  Similarity=0.177  Sum_probs=75.4

Q ss_pred             cccccCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCC
Q 045549            5 EVTQEVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLST   78 (134)
Q Consensus         5 ~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~   78 (134)
                      +.+..+++|+.|++++|.+++++...   .++|++|++++|.++...+..   +++|++|++++|.+++..+..+..+++
T Consensus        93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  172 (452)
T 3zyi_A           93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS  172 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCc
Confidence            34556677777777777776644332   267777777777777655443   667777777777776444445554444


Q ss_pred             ccc--------cccCC-c----------------------cCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCC
Q 045549           79 IEI--------PWPIP-E----------------------TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN  127 (134)
Q Consensus        79 L~~--------~~~~~-~----------------------~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  127 (134)
                      |+.        ...++ .                      .+..+++|+.|++++|.+.+..|..|.++++|+.|++++|
T Consensus       173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred             ccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence            443        00111 1                      2334455556666666666555556666666666776666


Q ss_pred             ccccc
Q 045549          128 KIEDI  132 (134)
Q Consensus       128 ~l~~~  132 (134)
                      .+++.
T Consensus       253 ~l~~~  257 (452)
T 3zyi_A          253 QVSLI  257 (452)
T ss_dssp             CCCEE
T ss_pred             cCceE
Confidence            66554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.67  E-value=6e-16  Score=110.51  Aligned_cols=128  Identities=17%  Similarity=0.232  Sum_probs=103.4

Q ss_pred             cccCCcccEEEcCCCccCCC-Cccc--ccCCcEEEccCcccCCcCCC-C---CCCccEEEcccCccccccCccccCCCCc
Q 045549            7 TQEVCRDIKIQFGKNSFDGI-KKLP--WKNLEYLDFRSNLLQGLFLD-P---SSNMKVFLISNNRFTREIPCLICNLSTI   79 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~~~~-~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L   79 (134)
                      |.-.+++++|++++|.++++ |..+  +++|++|++++|.+.+..+. .   +++|++|++++|.+++..|..++.+++|
T Consensus        26 p~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  105 (455)
T 3v47_A           26 PELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL  105 (455)
T ss_dssp             CCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred             CCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence            33336899999999999885 5444  38999999999998755433 2   8899999999999998889999988888


Q ss_pred             cc--------cccCCcc--CcCCCCCcEEEccCCccccCcccc-ccCCCCCcEEEcCCCcccccCC
Q 045549           80 EI--------PWPIPET--LSKGSNLRTLNFNGNELVGSVPRS-LLNCENLQVVDLGNNKIEDILH  134 (134)
Q Consensus        80 ~~--------~~~~~~~--~~~~~~L~~l~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~  134 (134)
                      +.        .+..+..  ++.+++|+.|++++|.+.+..|.. +.++++|+.|++++|.+++..|
T Consensus       106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A          106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence            87        1122333  888999999999999999776765 8999999999999999987643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.67  E-value=1.2e-15  Score=109.05  Aligned_cols=128  Identities=14%  Similarity=0.130  Sum_probs=90.0

Q ss_pred             ccccccCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CC------------------------
Q 045549            4 EEVTQEVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SS------------------------   53 (134)
Q Consensus         4 ~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~------------------------   53 (134)
                      ...+.++++|+.|++++|.++.++...   .++|+.|++++|.++...+..   ++                        
T Consensus       105 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l  184 (440)
T 3zyj_A          105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL  184 (440)
T ss_dssp             GGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC
T ss_pred             hhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc
Confidence            345667788888888888887766543   277778888887776544322   44                        


Q ss_pred             -CccEEEcccCccccccCccccCCCCccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEc
Q 045549           54 -NMKVFLISNNRFTREIPCLICNLSTIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDL  124 (134)
Q Consensus        54 -~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l  124 (134)
                       +|++|++++|.++ .+| .+..+.+|+.        ....|..+..+++|+.|++++|.+++..+..|.++++|+.|++
T Consensus       185 ~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  262 (440)
T 3zyj_A          185 SNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL  262 (440)
T ss_dssp             SSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEEC
T ss_pred             cccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEEC
Confidence             4555555555544 333 2334444444        2334678889999999999999999777888999999999999


Q ss_pred             CCCcccccC
Q 045549          125 GNNKIEDIL  133 (134)
Q Consensus       125 ~~n~l~~~~  133 (134)
                      ++|++++..
T Consensus       263 ~~N~l~~~~  271 (440)
T 3zyj_A          263 AHNNLTLLP  271 (440)
T ss_dssp             TTSCCCCCC
T ss_pred             CCCCCCccC
Confidence            999998653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=1.1e-16  Score=120.65  Aligned_cols=110  Identities=22%  Similarity=0.250  Sum_probs=73.5

Q ss_pred             cccccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCc
Q 045549            5 EVTQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTI   79 (134)
Q Consensus         5 ~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L   79 (134)
                      +.+..++.|+.|++++|.+..+|..++  .+|++|++++|.++. +|..   +++|++|+|++|+++ .           
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~-~-----------  284 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-S-----------  284 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSCCS-S-----------
T ss_pred             hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCcCC-c-----------
Confidence            344556666667777666666665543  666666777766663 3332   666667777766666 3           


Q ss_pred             cccccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549           80 EIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        80 ~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                           +|..++.+++|+.|++++|.+. .+|..|+++++|+.|++++|.|++.+
T Consensus       285 -----lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~  332 (727)
T 4b8c_D          285 -----LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF  332 (727)
T ss_dssp             -----CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred             -----cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCC
Confidence                 4556667778888888888887 67777888888888888888887754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=4.4e-16  Score=100.37  Aligned_cols=120  Identities=11%  Similarity=0.128  Sum_probs=53.4

Q ss_pred             CCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc------
Q 045549           10 VCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI------   81 (134)
Q Consensus        10 ~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------   81 (134)
                      +++|+.|++++|.++.++... ++++++|++++|.++....-. ++.|++|++++|.+++..+..++.+++|+.      
T Consensus        43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  122 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS  122 (197)
T ss_dssp             HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred             cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence            445555555555555444211 245555555555443321111 445555555555554444444444444444      


Q ss_pred             --cccCCccCcCCCCCcEEEccCCc-cccCccccccCCCCCcEEEcCCCcccc
Q 045549           82 --PWPIPETLSKGSNLRTLNFNGNE-LVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 --~~~~~~~~~~~~~L~~l~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                        ....+..++.+++|+.|++++|. +. .+| .+.++++|+.|++++|.+++
T Consensus       123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          123 AHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             BCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             ccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence              11123334444445555555444 33 333 34444444444444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.66  E-value=3.3e-16  Score=115.44  Aligned_cols=99  Identities=18%  Similarity=0.179  Sum_probs=50.2

Q ss_pred             cCCcEEEccCcccCCcCCCC---CCCccEEEcccCcccc-ccCccccCCCCccc--------cccCCccCcCCCCCcEEE
Q 045549           32 KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTR-EIPCLICNLSTIEI--------PWPIPETLSKGSNLRTLN   99 (134)
Q Consensus        32 ~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l~   99 (134)
                      ++|+.|++++|.+++..|..   +++|++|++++|.+++ ..|..+..+++|+.        ....|..++.+++|+.|+
T Consensus       424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence            44444444444444433332   4455555555555543 24444444444444        222344455555666666


Q ss_pred             ccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549          100 FNGNELVGSVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus       100 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                      +++|.+++..|..+.++++|+.|++++|+++
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            6666655444555566666666666666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.66  E-value=8.1e-16  Score=112.42  Aligned_cols=127  Identities=19%  Similarity=0.221  Sum_probs=74.2

Q ss_pred             ccCCcccEEEcCCCccCCCCc-cc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccc-cccCccccCCCCc
Q 045549            8 QEVCRDIKIQFGKNSFDGIKK-LP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFT-REIPCLICNLSTI   79 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~~~~-~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~-~~~~~~~~~l~~L   79 (134)
                      ..+++|+.|++++|.+.+.+. ..   .++|++|++++|.+++..+..   +++|++|++++|.+. +.+|..+..+++|
T Consensus       393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L  472 (570)
T 2z63_A          393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  472 (570)
T ss_dssp             ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence            345555555555555554221 11   255666666666555544433   556666666666665 4566666666655


Q ss_pred             cc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549           80 EI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH  134 (134)
Q Consensus        80 ~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  134 (134)
                      +.        ....|..++.+++|+.|++++|.+++..+..+.++++|+.+++++|.+++..|
T Consensus       473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            55        22335566666777777777777775545556677777777777777766543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.66  E-value=1.6e-15  Score=108.68  Aligned_cols=127  Identities=15%  Similarity=0.123  Sum_probs=90.6

Q ss_pred             cccccCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC----------------------------CC
Q 045549            5 EVTQEVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP----------------------------SS   53 (134)
Q Consensus         5 ~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~----------------------------l~   53 (134)
                      +.+..+++|+.|++++|.++.++...   .++|++|++++|.++...+..                            ++
T Consensus       117 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~  196 (452)
T 3zyi_A          117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF  196 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred             hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence            45667778888888888877766543   267777777777766543321                            44


Q ss_pred             CccEEEcccCccccccCccccCCCCccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcC
Q 045549           54 NMKVFLISNNRFTREIPCLICNLSTIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLG  125 (134)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~  125 (134)
                      +|++|++++|+++ .+| .+..+.+|+.        ....|..+..+++|+.|++++|.+.+..+..+.++++|+.|+++
T Consensus       197 ~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  274 (452)
T 3zyi_A          197 NLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA  274 (452)
T ss_dssp             TCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence            5555556556555 233 2444444444        23446788999999999999999997778889999999999999


Q ss_pred             CCcccccC
Q 045549          126 NNKIEDIL  133 (134)
Q Consensus       126 ~n~l~~~~  133 (134)
                      +|++++..
T Consensus       275 ~N~l~~~~  282 (452)
T 3zyi_A          275 HNNLSSLP  282 (452)
T ss_dssp             SSCCSCCC
T ss_pred             CCcCCccC
Confidence            99998653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=7.4e-16  Score=96.83  Aligned_cols=121  Identities=18%  Similarity=0.180  Sum_probs=98.5

Q ss_pred             cCCcccEEEcCCCccC--CCCccc--ccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc-
Q 045549            9 EVCRDIKIQFGKNSFD--GIKKLP--WKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI-   81 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~--~~~~~~--~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-   81 (134)
                      ..++++.|++++|.++  .+|..+  +++|++|++++|.+++. ...  +++|++|++++|++++..|..+..+++|+. 
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            3478999999999998  488764  49999999999999887 333  889999999999999768877776777766 


Q ss_pred             ------cccCC--ccCcCCCCCcEEEccCCccccCccc----cccCCCCCcEEEcCCCcccc
Q 045549           82 ------PWPIP--ETLSKGSNLRTLNFNGNELVGSVPR----SLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 ------~~~~~--~~~~~~~~L~~l~l~~n~l~~~~p~----~~~~l~~L~~L~l~~n~l~~  131 (134)
                            ...++  ..+..+++|+.|++++|.+++ .|.    .+..+++|+.|++++|.++.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhh
Confidence                  22333  577888999999999999994 454    78899999999999988754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.65  E-value=7.6e-17  Score=119.95  Aligned_cols=123  Identities=19%  Similarity=0.175  Sum_probs=84.0

Q ss_pred             cccCCcccEEEcCCCccCC------------------CCcccc----cCCcEEEccCcccCCcCCCC---CCCccEEEcc
Q 045549            7 TQEVCRDIKIQFGKNSFDG------------------IKKLPW----KNLEYLDFRSNLLQGLFLDP---SSNMKVFLIS   61 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~------------------~~~~~~----~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~   61 (134)
                      +..+++|++|++++|.+++                  +|+.+.    ++|++|++++|.+.+..|..   +++|++|+++
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence            4467788888888888887                  777543    77888888888877777754   7778888888


Q ss_pred             cCc-ccc-ccCccccCC------CCccc-------cccCCc--cCcCCCCCcEEEccCCccccCccccccCCCCCcEEEc
Q 045549           62 NNR-FTR-EIPCLICNL------STIEI-------PWPIPE--TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDL  124 (134)
Q Consensus        62 ~n~-l~~-~~~~~~~~l------~~L~~-------~~~~~~--~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l  124 (134)
                      +|+ +++ .+|..++.+      ++|+.       ...+|.  .++.+++|+.|++++|.+.|.+| .+..+++|+.|++
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L  360 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL  360 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence            887 776 677666554      44444       225565  66666777777777777666666 5566666666666


Q ss_pred             CCCccc
Q 045549          125 GNNKIE  130 (134)
Q Consensus       125 ~~n~l~  130 (134)
                      ++|.++
T Consensus       361 ~~N~l~  366 (636)
T 4eco_A          361 AYNQIT  366 (636)
T ss_dssp             CSSEEE
T ss_pred             CCCccc
Confidence            666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.65  E-value=1.6e-15  Score=111.82  Aligned_cols=77  Identities=12%  Similarity=0.057  Sum_probs=43.3

Q ss_pred             cccccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCcc-ccCCCC
Q 045549            5 EVTQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCL-ICNLST   78 (134)
Q Consensus         5 ~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~-~~~l~~   78 (134)
                      +.+..+++|+.|++++|.++.+|..+.  ++|++|++++|.+++..+..   +++|++|++++|.+.+.++.. +..+++
T Consensus       272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  351 (606)
T 3t6q_A          272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN  351 (606)
T ss_dssp             TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred             HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence            345566777777777777766666542  66777777777666554422   455555555555544333322 344444


Q ss_pred             ccc
Q 045549           79 IEI   81 (134)
Q Consensus        79 L~~   81 (134)
                      |+.
T Consensus       352 L~~  354 (606)
T 3t6q_A          352 LRE  354 (606)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            333

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.65  E-value=1.9e-15  Score=112.42  Aligned_cols=124  Identities=16%  Similarity=0.237  Sum_probs=86.7

Q ss_pred             cCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CC-------CccEEEcccCccccccCcccc-
Q 045549            9 EVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SS-------NMKVFLISNNRFTREIPCLIC-   74 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~-------~l~~L~l~~n~l~~~~~~~~~-   74 (134)
                      .+++|+.|++++|.++.+|..++   ++|+.|++++|.++...+..   ..       +|++|++++|+++ .+|..+. 
T Consensus       431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  509 (636)
T 4eco_A          431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA  509 (636)
T ss_dssp             CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST
T ss_pred             cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh
Confidence            34577777777777777776543   67788888888877433322   21       7888888888887 6777665 


Q ss_pred             -CCCCccc-------cccCCccCcCCCCCcEEEc------cCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549           75 -NLSTIEI-------PWPIPETLSKGSNLRTLNF------NGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH  134 (134)
Q Consensus        75 -~l~~L~~-------~~~~~~~~~~~~~L~~l~l------~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  134 (134)
                       .+++|+.       ...+|..++.+++|+.|++      ++|.+.+.+|..+.++++|+.|++++|.+ +.+|
T Consensus       510 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip  582 (636)
T 4eco_A          510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN  582 (636)
T ss_dssp             TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred             ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence             6666665       2336777777888888888      45667777777788888888888888887 4444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.65  E-value=3.8e-16  Score=113.87  Aligned_cols=124  Identities=14%  Similarity=0.138  Sum_probs=91.6

Q ss_pred             CcccEEEcCCCccCCCC-ccc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549           11 CRDIKIQFGKNSFDGIK-KLP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~-~~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      +++++|++++|.+++++ ..+  ++++++|++++|++++..+..   +++|++|++++|++++..+..++.+++|+.   
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            57888888888888743 333  378888888888888766543   778888888888888666666777777776   


Q ss_pred             ----cc--cCCccCcCCCCCcEEEccCCccccCcc-ccccCCCCCcEEEcCCCcccccCC
Q 045549           82 ----PW--PIPETLSKGSNLRTLNFNGNELVGSVP-RSLLNCENLQVVDLGNNKIEDILH  134 (134)
Q Consensus        82 ----~~--~~~~~~~~~~~L~~l~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~  134 (134)
                          ..  ..|..++.+++|+.|++++|.+.+.+| ..+.++++|+.|++++|.+++.+|
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence                11  345667788888888888887444554 467888888888888888877543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.65  E-value=3.1e-15  Score=103.10  Aligned_cols=124  Identities=23%  Similarity=0.317  Sum_probs=60.0

Q ss_pred             cccCCcccEEEcCCCccCC--C-Cccc--ccCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc
Q 045549            7 TQEVCRDIKIQFGKNSFDG--I-KKLP--WKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI   81 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~--~-~~~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~   81 (134)
                      +..+++|+.|++++|.++.  + +..+  .++|++|++++|.++.......++|++|++++|.+++..+..+..+++|+.
T Consensus       141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  220 (330)
T 1xku_A          141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAK  220 (330)
T ss_dssp             HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred             hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence            3445555555555555542  2 1111  145555555555555432222445555555555555444445554444444


Q ss_pred             --------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           82 --------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 --------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                              ....+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus       221 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             EECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             EECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence                    1112224444555555555555555 445555555555555555555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=7.2e-16  Score=99.36  Aligned_cols=123  Identities=13%  Similarity=0.078  Sum_probs=98.4

Q ss_pred             cccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-   81 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-   81 (134)
                      +..+++|+.|++++|.++.++... +++|++|++++|.+++..+..   +++|++|++++|.+++..+..+..+++|+. 
T Consensus        62 l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  141 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI  141 (197)
T ss_dssp             GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred             HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence            467889999999999877665332 489999999999998754444   899999999999999878888888888877 


Q ss_pred             -------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           82 -------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 -------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                             ...++ .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+.
T Consensus       142 ~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~~  196 (197)
T 4ezg_A          142 DLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGGK  196 (197)
T ss_dssp             ECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-----
T ss_pred             EccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCCc
Confidence                   12233 57889999999999999994 55 789999999999999998763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.64  E-value=2.4e-15  Score=112.15  Aligned_cols=132  Identities=14%  Similarity=0.130  Sum_probs=107.5

Q ss_pred             cccccccCCcccEEEcCCCccCCCCcc-c--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCC
Q 045549            3 EEEVTQEVCRDIKIQFGKNSFDGIKKL-P--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNL   76 (134)
Q Consensus         3 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l   76 (134)
                      +...+..+++|++|++++|.+++++.. +  .++|++|++++|.+++..+..   +++|++|++++|++++..|..++.+
T Consensus        41 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  120 (680)
T 1ziw_A           41 PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ  120 (680)
T ss_dssp             CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred             CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHcccc
Confidence            445577889999999999999985443 3  389999999999999876543   8899999999999997777888888


Q ss_pred             CCccc--------cccCCccCcCCCCCcEEEccCCccccCcccccc--CCCCCcEEEcCCCcccccCC
Q 045549           77 STIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLL--NCENLQVVDLGNNKIEDILH  134 (134)
Q Consensus        77 ~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~--~l~~L~~L~l~~n~l~~~~~  134 (134)
                      ++|+.        ....+..++.+++|+.|++++|.+++..+..+.  .+++|+.|++++|.+++..|
T Consensus       121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  188 (680)
T 1ziw_A          121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP  188 (680)
T ss_dssp             TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred             CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence            88887        334566788899999999999999966565544  56889999999999887643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.64  E-value=1.9e-15  Score=104.23  Aligned_cols=125  Identities=22%  Similarity=0.247  Sum_probs=75.3

Q ss_pred             cccCCcccEEEcCCCccCC--CCcccc--cCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc-
Q 045549            7 TQEVCRDIKIQFGKNSFDG--IKKLPW--KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI-   81 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~--~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-   81 (134)
                      +..+++|+.|++++|.++.  +....+  .+++.|++++|.+++......++|++|++++|.+++..+..+..+++|+. 
T Consensus       143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  222 (332)
T 2ft3_A          143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL  222 (332)
T ss_dssp             GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred             hCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            3444555555555554432  111111  24444444444444422222456777777777777666666766666655 


Q ss_pred             -------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           82 -------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 -------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                             ....+..++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++.
T Consensus       223 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             BCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred             ECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence                   2223345677788888888888888 6777788888888888888887654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=3.1e-15  Score=110.55  Aligned_cols=43  Identities=19%  Similarity=0.257  Sum_probs=26.8

Q ss_pred             CcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           89 LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        89 ~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      ++.+++|+.|++++|.+.+..|..+.++++|+.|++++|.+++
T Consensus       250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  292 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA  292 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred             hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence            3445566666666666665556666666666666666666654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.64  E-value=6.8e-16  Score=112.01  Aligned_cols=114  Identities=18%  Similarity=0.218  Sum_probs=60.6

Q ss_pred             EEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-------ccc
Q 045549           15 KIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWP   84 (134)
Q Consensus        15 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~   84 (134)
                      .|++++|.++++|..+.+++++|++++|.+++..+..   ++.|++|++++|++++..|..++.+++|+.       ...
T Consensus         4 ~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~   83 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK   83 (520)
T ss_dssp             EEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE
T ss_pred             eEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee
Confidence            4555555555555544455555555555555443322   555555555555555444555555555544       122


Q ss_pred             CCccCcCCCCCcEEEccCCcccc-CccccccCCCCCcEEEcCCCccc
Q 045549           85 IPETLSKGSNLRTLNFNGNELVG-SVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        85 ~~~~~~~~~~L~~l~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                      +|..  .+++|+.|++++|.+++ .+|..++++++|+.|++++|.++
T Consensus        84 lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           84 ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence            3333  45566666666666654 24555666666666666665554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.64  E-value=5.8e-16  Score=107.68  Aligned_cols=120  Identities=14%  Similarity=0.138  Sum_probs=55.5

Q ss_pred             cccEEEcCCCccCCCCcc-c--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc----
Q 045549           12 RDIKIQFGKNSFDGIKKL-P--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI----   81 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----   81 (134)
                      +++.|++++|.+++++.. +  +++|++|++++|.+++..+..   +++|++|++++|++++..+..++.+++|+.    
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            455555555555554432 1  255555555555555443332   455555555555555322222444444444    


Q ss_pred             ---cccCCc--cCcCCCCCcEEEccCC-ccccCccccccCCCCCcEEEcCCCcccc
Q 045549           82 ---PWPIPE--TLSKGSNLRTLNFNGN-ELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 ---~~~~~~--~~~~~~~L~~l~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                         ...+|.  .++.+++|+.|++++| .+.+..+..+.++++|+.|++++|.+++
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence               112232  3444555555555554 2332223344455555555555554444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.64  E-value=1.8e-15  Score=106.41  Aligned_cols=122  Identities=13%  Similarity=0.244  Sum_probs=81.8

Q ss_pred             CCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc--
Q 045549           10 VCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--   81 (134)
Q Consensus        10 ~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--   81 (134)
                      +++++.|++++|.++.+|...   ++++++|++++|.+++..+..   ++.|++|++++|.+++..|..++.+++|+.  
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            466777777777776666654   267777777777776654433   667777777777777665666666666665  


Q ss_pred             -----cccCCcc-CcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           82 -----PWPIPET-LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 -----~~~~~~~-~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                           ...+|.. ++.+++|+.|++++|.+.+..+..+.++++|+.|++++|.+++
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence                 2234443 4667777777777777775555667777777777777777664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.64  E-value=3.4e-15  Score=110.04  Aligned_cols=125  Identities=16%  Similarity=0.139  Sum_probs=60.0

Q ss_pred             cccCCcccEEEcCCCccCCC-Cccc--ccCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccCccccCCCCc
Q 045549            7 TQEVCRDIKIQFGKNSFDGI-KKLP--WKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIPCLICNLSTI   79 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~~~~~~l~~L   79 (134)
                      +..+++|+.|++++|.+.++ +..+  .++++.|++++|++++..+..    +++|++|++++|.+++..|..+..+++|
T Consensus       372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  451 (606)
T 3t6q_A          372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL  451 (606)
T ss_dssp             TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred             cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence            34555666666666655552 2222  255555666655555443321    4555555555555554445555544444


Q ss_pred             cc--------cc---cCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           80 EI--------PW---PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        80 ~~--------~~---~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      +.        .+   ..+..++.+++|+.|++++|.+++..|..+.++++|+.|++++|++++
T Consensus       452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  514 (606)
T 3t6q_A          452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS  514 (606)
T ss_dssp             CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred             CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence            44        00   011234444445555555554443334444444445555555444444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.64  E-value=2.1e-15  Score=111.00  Aligned_cols=118  Identities=18%  Similarity=0.075  Sum_probs=101.2

Q ss_pred             cEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-------cc
Q 045549           14 IKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PW   83 (134)
Q Consensus        14 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~   83 (134)
                      +..+.++-.++.||+.+..++++|++++|+++++.+..   ++.|++|++++|++++..+.+|..+++|+.       ..
T Consensus        34 ~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~  113 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ  113 (635)
T ss_dssp             TEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             CEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence            45677777888899988889999999999999877654   899999999999999777778999988887       23


Q ss_pred             cCC-ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           84 PIP-ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        84 ~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      .+| ..|+.+++|+.|++++|.+++..+..|+++++|+.|++++|.+++
T Consensus       114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~  162 (635)
T 4g8a_A          114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS  162 (635)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence            344 468899999999999999996555679999999999999999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.64  E-value=7e-16  Score=105.78  Aligned_cols=59  Identities=8%  Similarity=-0.057  Sum_probs=28.2

Q ss_pred             ccCCcccEEEcCCCccCCCCcccc-------cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccc
Q 045549            8 QEVCRDIKIQFGKNSFDGIKKLPW-------KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFT   66 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~~~~~~~-------~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~   66 (134)
                      ..+++|+.|++++|.++++|..+.       ++|++|++++|++++..+..   +++|++|++++|++.
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  186 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL  186 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence            344555555555555544433221       44555555555555444332   445555555555543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.64  E-value=1.7e-15  Score=110.40  Aligned_cols=125  Identities=15%  Similarity=0.134  Sum_probs=77.3

Q ss_pred             cccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc---
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      +..+++|+.|++++|.++.+|..+.  ++|++|++++|+++.......++|++|++++|++++. +..+..+..|..   
T Consensus       383 ~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~-~~~l~~L~~L~Ls~N  461 (549)
T 2z81_A          383 LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF-SLFLPRLQELYISRN  461 (549)
T ss_dssp             GGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC-CCCCTTCCEEECCSS
T ss_pred             hhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhh-cccCChhcEEECCCC
Confidence            4455556666666665555555432  5566666666665543222245666666666666632 222222222222   


Q ss_pred             -cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549           82 -PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        82 -~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                       ...+|. .+.+++|+.|++++|++++..|..+..+++|+.+++++|.+.+..
T Consensus       462 ~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          462 KLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             CCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred             ccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence             334555 356788999999999998776777888999999999999887653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=2.4e-15  Score=111.10  Aligned_cols=122  Identities=13%  Similarity=0.232  Sum_probs=82.8

Q ss_pred             CCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc--
Q 045549           10 VCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--   81 (134)
Q Consensus        10 ~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--   81 (134)
                      +.+++.+++++|.+..+|...+   ++|++|++++|.+++..+..   ++.|++|++++|.+++..|..++.+++|+.  
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            4566777777777766666542   67777777777777665533   667777777777777666666666666665  


Q ss_pred             -----cccCCcc-CcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           82 -----PWPIPET-LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 -----~~~~~~~-~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                           ...+|.. ++.+++|+.|++++|.+.+..|..+.++++|+.|++++|.+++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence                 2234433 4677777777777777776666667777777777777777765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.63  E-value=5.2e-16  Score=107.92  Aligned_cols=125  Identities=19%  Similarity=0.213  Sum_probs=80.8

Q ss_pred             cccccCCcccEEEcCCCccCCCCcc-c--ccCCcEEEccCcccCCcCCC---CCCCccEEEcccCccccccCc--cccCC
Q 045549            5 EVTQEVCRDIKIQFGKNSFDGIKKL-P--WKNLEYLDFRSNLLQGLFLD---PSSNMKVFLISNNRFTREIPC--LICNL   76 (134)
Q Consensus         5 ~~~~~~~~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~~---~l~~l~~L~l~~n~l~~~~~~--~~~~l   76 (134)
                      +.+..+++|+.|++++|.+++++.. +  .++|++|++++|.+++..+.   .+++|++|++++|.++ .+|.  .+..+
T Consensus        70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l  148 (353)
T 2z80_A           70 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHL  148 (353)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTC
T ss_pred             HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccC
Confidence            3456677888888888877774432 3  26777888888777765443   1677777777777777 4443  56666


Q ss_pred             CCccc---------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549           77 STIEI---------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        77 ~~L~~---------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                      ++|+.         ....+..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.++
T Consensus       149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            66655         1112345666777777777777777555666666666666666666553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.63  E-value=1.4e-15  Score=109.36  Aligned_cols=128  Identities=19%  Similarity=0.132  Sum_probs=96.0

Q ss_pred             ccccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCC
Q 045549            4 EEVTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLS   77 (134)
Q Consensus         4 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~   77 (134)
                      ...+.++++|+.|++++|.++.+|...+   ++|++|++++|.+++..+..   +++|++|++++|.+++..+..+..+.
T Consensus        73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  152 (477)
T 2id5_A           73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN  152 (477)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT
T ss_pred             hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC
Confidence            3456788999999999999988877543   88999999999988776654   78899999999999877777888877


Q ss_pred             Cccc-------cccCC-ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           78 TIEI-------PWPIP-ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        78 ~L~~-------~~~~~-~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      +|+.       ...++ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~  214 (477)
T 2id5_A          153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD  214 (477)
T ss_dssp             TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred             CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence            7776       12223 346677788888888887775555567777777777776665443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.63  E-value=3.9e-15  Score=103.98  Aligned_cols=121  Identities=17%  Similarity=0.123  Sum_probs=104.1

Q ss_pred             cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCC----CCCCccEEEcccCccccccCccccCCCCccc------
Q 045549           12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLD----PSSNMKVFLISNNRFTREIPCLICNLSTIEI------   81 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~----~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------   81 (134)
                      .-+.++++++.++.+|..+...++.|++++|.+++..+.    .+++|++|++++|++++..+..|..+++|+.      
T Consensus        19 ~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           19 ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             ETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            346899999999999998888899999999999987654    3789999999999999777788888888877      


Q ss_pred             --cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           82 --PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 --~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                        ....+..+..+++|+.|++++|.+.+..|..|.++++|+.|++++|.+++.
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l  151 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF  151 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence              222344688899999999999999976688899999999999999999863

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.62  E-value=3.1e-15  Score=109.68  Aligned_cols=119  Identities=17%  Similarity=0.148  Sum_probs=91.4

Q ss_pred             CcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc------
Q 045549           11 CRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI------   81 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------   81 (134)
                      ...+.+++++|.++++|..+.++++.|++++|.+++..+..   ++.|++|++++|++++..|..+..+++|+.      
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             CCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            34467888888888888877788888888888888766543   778888888888888777778888777777      


Q ss_pred             -cccCCccCcCCCCCcEEEccCCcccc-CccccccCCCCCcEEEcCCCcccc
Q 045549           82 -PWPIPETLSKGSNLRTLNFNGNELVG-SVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 -~~~~~~~~~~~~~L~~l~l~~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                       ...+|..  .+++|+.|++++|.+.+ ..|..++++++|+.|++++|.+++
T Consensus       111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence             2345555  67888888888888885 235778888888888888888764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.62  E-value=8.4e-15  Score=101.05  Aligned_cols=119  Identities=18%  Similarity=0.277  Sum_probs=98.3

Q ss_pred             CcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc------
Q 045549           11 CRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI------   81 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------   81 (134)
                      +.++.++++++.++.+|..+.++++.|++++|.+++..+..   ++.|++|++++|.+++..|..++.+++|+.      
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            47899999999998899888889999999999998876643   889999999999999777888888888877      


Q ss_pred             -cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           82 -PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 -~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                       ...+|..+.  ++|+.|++++|.+.+..+..+.++++|+.|++++|.++.
T Consensus       113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  161 (332)
T 2ft3_A          113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN  161 (332)
T ss_dssp             CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred             cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence             334555544  789999999999985545568889999999999998853

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=2.3e-15  Score=92.81  Aligned_cols=108  Identities=22%  Similarity=0.321  Sum_probs=75.2

Q ss_pred             ccCCcccEEEcCCCccC--CCCccc--ccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc
Q 045549            8 QEVCRDIKIQFGKNSFD--GIKKLP--WKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI   81 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~--~~~~~~--~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~   81 (134)
                      ...++++.|++++|.++  .+|..+  ++++++|++++|.+++. ...  ++.|++|++++|.+++.+|..+.       
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-------   85 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE-------   85 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH-------
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhh-------
Confidence            34578999999999998  487754  48999999999999887 332  88999999999999854554433       


Q ss_pred             cccCCccCcCCCCCcEEEccCCccccC-ccccccCCCCCcEEEcCCCccccc
Q 045549           82 PWPIPETLSKGSNLRTLNFNGNELVGS-VPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 ~~~~~~~~~~~~~L~~l~l~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                               .+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++.
T Consensus        86 ---------~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~  128 (149)
T 2je0_A           86 ---------KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL  128 (149)
T ss_dssp             ---------HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred             ---------hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence                     345555555555555531 124555555556666655555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.62  E-value=2.9e-15  Score=99.05  Aligned_cols=118  Identities=17%  Similarity=0.139  Sum_probs=55.5

Q ss_pred             cccEEEcCCCccCCCCccc---ccCCcEEEccCcc-cCCcCCCC---CCCccEEEccc-CccccccCccccCCCCccc--
Q 045549           12 RDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNL-LQGLFLDP---SSNMKVFLISN-NRFTREIPCLICNLSTIEI--   81 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~-l~~~~~~~---l~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~--   81 (134)
                      +++.|++++|.+++++...   ++++++|++++|. ++...+..   +++|++|++++ |.+++..+..+..+++|+.  
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            4555555555555544422   2555555555554 44433322   45555555555 5555333344444444444  


Q ss_pred             -----cccCCccCcCCCCCc---EEEccCC-ccccCccccccCCCCCc-EEEcCCCccc
Q 045549           82 -----PWPIPETLSKGSNLR---TLNFNGN-ELVGSVPRSLLNCENLQ-VVDLGNNKIE  130 (134)
Q Consensus        82 -----~~~~~~~~~~~~~L~---~l~l~~n-~l~~~~p~~~~~l~~L~-~L~l~~n~l~  130 (134)
                           ...+|. ++.+++|+   .+++++| .+++..+..|.++++|+ .+++++|.++
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence                 122333 44444444   5555555 44422223344555555 5555555444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.62  E-value=2e-15  Score=99.78  Aligned_cols=125  Identities=12%  Similarity=0.072  Sum_probs=63.5

Q ss_pred             cccCCcccEEEcCC-CccCCCCccc---ccCCcEEEccCcccCCcCCCC-CCCcc---EEEcccC-ccccccCccccCCC
Q 045549            7 TQEVCRDIKIQFGK-NSFDGIKKLP---WKNLEYLDFRSNLLQGLFLDP-SSNMK---VFLISNN-RFTREIPCLICNLS   77 (134)
Q Consensus         7 ~~~~~~L~~L~l~~-n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~~-l~~l~---~L~l~~n-~l~~~~~~~~~~l~   77 (134)
                      +..+++|+.|++++ |.++.++...   +++|++|++++|.+++...-. +++++   +|++++| .+++..+..+..+.
T Consensus        76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~  155 (239)
T 2xwt_C           76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC  155 (239)
T ss_dssp             EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred             cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchh
Confidence            33444444444444 4444433322   144455555555444422111 33333   5555555 55544444455555


Q ss_pred             Ccc-c-------cccCCccCcCCCCCcEEEccCCc-cccCccccccCC-CCCcEEEcCCCcccc
Q 045549           78 TIE-I-------PWPIPETLSKGSNLRTLNFNGNE-LVGSVPRSLLNC-ENLQVVDLGNNKIED  131 (134)
Q Consensus        78 ~L~-~-------~~~~~~~~~~~~~L~~l~l~~n~-l~~~~p~~~~~l-~~L~~L~l~~n~l~~  131 (134)
                      +|+ .       ...+|......++|+.+++++|. +++..+..+.++ ++|+.|++++|++++
T Consensus       156 ~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          156 NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             SSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             cceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence            555 3       12334333233667777777773 663334556777 777777777777764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.61  E-value=1.4e-15  Score=96.44  Aligned_cols=122  Identities=19%  Similarity=0.226  Sum_probs=91.3

Q ss_pred             cccCCcccEEEcCCCccCCCCccc-c-cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc-
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKLP-W-KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI-   81 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~~-~-~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-   81 (134)
                      +...++++.|++++|.++.++... . +++++|++++|.+++. +..  ++.|++|++++|++++..+..+..+++|+. 
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            346789999999999999886543 2 5999999999999986 333  889999999999999544344466666655 


Q ss_pred             ------cccCCc--cCcCCCCCcEEEccCCccccCcccc----ccCCCCCcEEEcCCCccc
Q 045549           82 ------PWPIPE--TLSKGSNLRTLNFNGNELVGSVPRS----LLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        82 ------~~~~~~--~~~~~~~L~~l~l~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l~  130 (134)
                            ...+|.  .++.+++|+.+++++|.++ .+|..    +..+++|+.|++++|.+.
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence                  233444  5667788888888888887 55654    777888888888777653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.61  E-value=6.9e-15  Score=103.41  Aligned_cols=127  Identities=13%  Similarity=0.115  Sum_probs=94.8

Q ss_pred             ccccccccCCcccEEEcCCCccCCCCcc-c--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccC
Q 045549            2 LEEEVTQEVCRDIKIQFGKNSFDGIKKL-P--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICN   75 (134)
Q Consensus         2 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~   75 (134)
                      ++..++..+++|++|++++|.+++++.. +  .++|++|++++|.+++..+..   ++.|++|++++|.++...+..+..
T Consensus        60 l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~  139 (390)
T 3o6n_A           60 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN  139 (390)
T ss_dssp             ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcC
Confidence            4555677889999999999999886653 3  388999999999999877664   889999999999999444444677


Q ss_pred             CCCccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           76 LSTIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        76 l~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      +++|+.        ....+..++.+++|+.|++++|.+++. +  +..+++|+.+++++|.+++
T Consensus       140 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEECCSSCCSE
T ss_pred             CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cccccccceeecccccccc
Confidence            777777        233455688899999999999998843 2  4445555555555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=6.8e-16  Score=118.22  Aligned_cols=121  Identities=20%  Similarity=0.193  Sum_probs=62.6

Q ss_pred             ccCCcccEEEcCCCccCC------------------CCccc----ccCCcEEEccCcccCCcCCCC---CCCccEEEccc
Q 045549            8 QEVCRDIKIQFGKNSFDG------------------IKKLP----WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISN   62 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~------------------~~~~~----~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~   62 (134)
                      ..+++|+.|++++|.+++                  +|+.+    .++|++|++++|.+.+..|..   +++|++|++++
T Consensus       445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC  524 (876)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred             hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence            355666666666666665                  55543    255666666666655555543   55566666666


Q ss_pred             Cc-ccc-ccCccccCCC-------Cccc-------cccCCc--cCcCCCCCcEEEccCCccccCccccccCCCCCcEEEc
Q 045549           63 NR-FTR-EIPCLICNLS-------TIEI-------PWPIPE--TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDL  124 (134)
Q Consensus        63 n~-l~~-~~~~~~~~l~-------~L~~-------~~~~~~--~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l  124 (134)
                      |+ +++ .+|..++.+.       +|+.       ...+|.  .++.+++|+.|++++|.+. .+| .++.+++|+.|++
T Consensus       525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L  602 (876)
T 4ecn_A          525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL  602 (876)
T ss_dssp             CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred             CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence            65 554 4554443322       3333       123444  4445555555555555554 444 4444444555555


Q ss_pred             CCCccc
Q 045549          125 GNNKIE  130 (134)
Q Consensus       125 ~~n~l~  130 (134)
                      ++|.++
T Consensus       603 s~N~l~  608 (876)
T 4ecn_A          603 DYNQIE  608 (876)
T ss_dssp             CSSCCS
T ss_pred             cCCccc
Confidence            554444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.60  E-value=8.5e-15  Score=111.91  Aligned_cols=128  Identities=13%  Similarity=0.128  Sum_probs=99.8

Q ss_pred             ccccCCcccEEEcCCCccCCC-Cccc--ccCCcEEEccCcccCCcC-CCC---CCCccEEEcccCccccccCccccCCCC
Q 045549            6 VTQEVCRDIKIQFGKNSFDGI-KKLP--WKNLEYLDFRSNLLQGLF-LDP---SSNMKVFLISNNRFTREIPCLICNLST   78 (134)
Q Consensus         6 ~~~~~~~L~~L~l~~n~l~~~-~~~~--~~~L~~L~l~~n~l~~~~-~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~   78 (134)
                      +|.-.++++.|++++|.++++ +..+  ..+|++|++++|...+.+ |..   ++.|++|++++|.+.+..|..++.+.+
T Consensus        19 vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~   98 (844)
T 3j0a_A           19 VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH   98 (844)
T ss_dssp             CCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred             CCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence            444346889999999999884 4444  388999999999655444 333   889999999999999888999998888


Q ss_pred             ccc--------cccCCcc--CcCCCCCcEEEccCCccccCcc-ccccCCCCCcEEEcCCCcccccC
Q 045549           79 IEI--------PWPIPET--LSKGSNLRTLNFNGNELVGSVP-RSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        79 L~~--------~~~~~~~--~~~~~~L~~l~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                      |+.        .+..+..  ++.+++|+.|++++|.+.+..+ ..++++++|+.|++++|.+++..
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~  164 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC  164 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence            877        2223443  7889999999999999986544 57899999999999999887653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.60  E-value=1.8e-15  Score=104.00  Aligned_cols=118  Identities=15%  Similarity=0.210  Sum_probs=65.6

Q ss_pred             CCcccEEEcCCCccCCCCcc-c--ccCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccCccccCCCCccc-
Q 045549           10 VCRDIKIQFGKNSFDGIKKL-P--WKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIPCLICNLSTIEI-   81 (134)
Q Consensus        10 ~~~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-   81 (134)
                      +++|+.|++++|.+++++.. +  .++|++|++++|.+++..+..    +++|++|++++|.+++. +.. ..+++|+. 
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~-~~l~~L~~L  196 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ-VVFAKLKTL  196 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC-CCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccc-cccccCCEE
Confidence            44455555555555543322 1  255555555555555443322    45555555555555522 211 12333333 


Q ss_pred             ------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549           82 ------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        82 ------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                            ...+|..+..+++|+.|++++|.++ .+|..+..+++|+.+++++|.++
T Consensus       197 ~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             ECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             ECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence                  2234455666777777777777777 56767777777777777777776

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.60  E-value=2.1e-15  Score=109.15  Aligned_cols=40  Identities=23%  Similarity=0.273  Sum_probs=25.3

Q ss_pred             CCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           91 KGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        91 ~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      .+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++
T Consensus       189 ~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          189 VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE
T ss_pred             cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc
Confidence            35666666666666663 34446666667777777776665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.60  E-value=1.4e-15  Score=104.22  Aligned_cols=124  Identities=15%  Similarity=0.084  Sum_probs=95.5

Q ss_pred             cCCcccEEEcCCCccCC-CCccc----ccCCcEEEccCcccCCcCCCC---C-----CCccEEEcccCccccccCccccC
Q 045549            9 EVCRDIKIQFGKNSFDG-IKKLP----WKNLEYLDFRSNLLQGLFLDP---S-----SNMKVFLISNNRFTREIPCLICN   75 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~-~~~~~----~~~L~~L~l~~n~l~~~~~~~---l-----~~l~~L~l~~n~l~~~~~~~~~~   75 (134)
                      .+++|++|++++|.+++ +|..+    .++|++|++++|++++. |..   +     ++|++|++++|++++..+..++.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            58899999999999997 77754    38999999999999987 543   3     89999999999999777789998


Q ss_pred             CCCccc----ccc------CCccC--cCCCCCcEEEccCCcccc--Ccc-ccccCCCCCcEEEcCCCcccccC
Q 045549           76 LSTIEI----PWP------IPETL--SKGSNLRTLNFNGNELVG--SVP-RSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        76 l~~L~~----~~~------~~~~~--~~~~~L~~l~l~~n~l~~--~~p-~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                      +++|+.    ...      .+..+  +.+++|+.|++++|.+++  .++ ..+.++++|+.|++++|.+++.+
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            888877    111      23333  677888888888888872  112 23457778888888888877743

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.59  E-value=2e-14  Score=98.49  Aligned_cols=59  Identities=15%  Similarity=0.226  Sum_probs=27.4

Q ss_pred             ccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccc
Q 045549            8 QEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFT   66 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~   66 (134)
                      ..+++|+.|++++|.+++++... +++|++|++++|.+++...-. +++|++|++++|+++
T Consensus        60 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~  120 (308)
T 1h6u_A           60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT  120 (308)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCC
T ss_pred             hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCC
Confidence            34555555555555555544311 245555555555544432111 444444444444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.59  E-value=1.8e-15  Score=109.52  Aligned_cols=78  Identities=19%  Similarity=0.130  Sum_probs=35.3

Q ss_pred             CCccEEEcccCccccccCccccCCCCccc--------cccCCccCc-CCCCCcEEEccCCccccCccccccCCCCCcEEE
Q 045549           53 SNMKVFLISNNRFTREIPCLICNLSTIEI--------PWPIPETLS-KGSNLRTLNFNGNELVGSVPRSLLNCENLQVVD  123 (134)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~~~~~~~~-~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~  123 (134)
                      ++|++|++++|.+++..|..++.+++|+.        .+..|..+. .+++|+.|++++|.+++. |. ...+++|+.|+
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~  197 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLD  197 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEE
Confidence            34444444444444444444444444433        112233332 345555555555555532 21 22355555555


Q ss_pred             cCCCccccc
Q 045549          124 LGNNKIEDI  132 (134)
Q Consensus       124 l~~n~l~~~  132 (134)
                      +++|.+++.
T Consensus       198 Ls~N~l~~~  206 (487)
T 3oja_A          198 LSSNKLAFM  206 (487)
T ss_dssp             CCSSCCCEE
T ss_pred             CCCCCCCCC
Confidence            555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.59  E-value=1e-14  Score=106.92  Aligned_cols=123  Identities=23%  Similarity=0.282  Sum_probs=69.0

Q ss_pred             cCCcccEEEcCCCccCCCCcc---c--ccCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccCcccc-CCCC
Q 045549            9 EVCRDIKIQFGKNSFDGIKKL---P--WKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIPCLIC-NLST   78 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~~~~~---~--~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~~~~~-~l~~   78 (134)
                      .+++|+.|++++|.+++++..   +  .++++.|++++|.+++..|..    +++|++|++++|++++..|..+. .+..
T Consensus       375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~  454 (562)
T 3a79_B          375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV  454 (562)
T ss_dssp             SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSE
T ss_pred             ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCE
Confidence            444555555555555443321   1  145555555555555422221    45555555555555544444442 3333


Q ss_pred             ccc----cccCCccCcCCCCCcEEEccCCccccCcccc-ccCCCCCcEEEcCCCccccc
Q 045549           79 IEI----PWPIPETLSKGSNLRTLNFNGNELVGSVPRS-LLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        79 L~~----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~  132 (134)
                      |..    ...+|..+..+++|+.|++++|+++ .+|.. +..+++|+.+++++|.+++.
T Consensus       455 L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          455 LDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             EECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             EECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            322    3356666667777777888777777 55654 77777777788887777653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=1.6e-14  Score=110.70  Aligned_cols=122  Identities=13%  Similarity=0.214  Sum_probs=84.4

Q ss_pred             CcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCCC----------CCccEEEcccCccccccCcccc--C
Q 045549           11 CRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDPS----------SNMKVFLISNNRFTREIPCLIC--N   75 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~l----------~~l~~L~l~~n~l~~~~~~~~~--~   75 (134)
                      ++|+.|++++|.++.+|..++   ++|+.|++++|.++.+.....          ++|++|++++|+++ .+|..+.  .
T Consensus       673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~  751 (876)
T 4ecn_A          673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT  751 (876)
T ss_dssp             CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred             CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence            367777777777777766543   677888888887774333221          16788888888877 6776665  6


Q ss_pred             CCCccc-------cccCCccCcCCCCCcEEEccC------CccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549           76 LSTIEI-------PWPIPETLSKGSNLRTLNFNG------NELVGSVPRSLLNCENLQVVDLGNNKIEDILH  134 (134)
Q Consensus        76 l~~L~~-------~~~~~~~~~~~~~L~~l~l~~------n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  134 (134)
                      +++|+.       ...+|..++.+++|+.|++++      |.+.+.+|..+.++++|+.|++++|.+ +.+|
T Consensus       752 l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip  822 (876)
T 4ecn_A          752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD  822 (876)
T ss_dssp             CTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred             CCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence            666655       234677777778888887765      666767777777888888888888877 5554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.58  E-value=2.1e-14  Score=98.38  Aligned_cols=121  Identities=21%  Similarity=0.329  Sum_probs=70.1

Q ss_pred             cccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc---
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      +..+++|+.|++++|.+++++... .++|+.|++++|.+++..+-. +++|++|++++|.+++. +. +..+++|+.   
T Consensus        81 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l  158 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSI  158 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEEC
T ss_pred             HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEc
Confidence            345666666777666666654321 266666777766666543322 66666677766666633 22 445555544   


Q ss_pred             ----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           82 ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 ----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                          ...++. +..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+++.
T Consensus       159 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~  210 (308)
T 1h6u_A          159 GNAQVSDLTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDV  210 (308)
T ss_dssp             CSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBC
T ss_pred             cCCcCCCChh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCcc
Confidence                112222 5566667777777776663 332 56666777777777766654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.58  E-value=3.1e-14  Score=96.83  Aligned_cols=119  Identities=26%  Similarity=0.284  Sum_probs=62.5

Q ss_pred             ccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc----
Q 045549            8 QEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI----   81 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----   81 (134)
                      ..+++|+.|++++|.+++++... +++|++|++++|.+++...-. +++|++|++++|++++ + ..+..+++|+.    
T Consensus        65 ~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~  142 (291)
T 1h6t_A           65 QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLG  142 (291)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECC
T ss_pred             hcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEcc
Confidence            34556666666666665544311 255666666666655532211 5566666666666553 2 23444444444    


Q ss_pred             ---cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           82 ---PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 ---~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                         ...+ ..++.+++|+.|++++|.+++. +. +..+++|+.|++++|.+++
T Consensus       143 ~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          143 NNKITDI-TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             SSCCCCC-GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCB
T ss_pred             CCcCCcc-hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcCCC
Confidence               1112 3445556666666666666532 22 5566666666666665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=2e-14  Score=105.88  Aligned_cols=104  Identities=18%  Similarity=0.234  Sum_probs=80.4

Q ss_pred             cccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccccccCCc
Q 045549           12 RDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPE   87 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~   87 (134)
                      .|+.|++++|.++++|... +++|+.|++++|.++.+ |..   +++|++|++++|.+++                 +| 
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~-----------------lp-  502 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN-----------------VD-  502 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCC-----------------CG-
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCC-----------------Cc-
Confidence            4677788888777777621 26778888888877743 333   7778888888877772                 34 


Q ss_pred             cCcCCCCCcEEEccCCccccCc-cccccCCCCCcEEEcCCCcccccCC
Q 045549           88 TLSKGSNLRTLNFNGNELVGSV-PRSLLNCENLQVVDLGNNKIEDILH  134 (134)
Q Consensus        88 ~~~~~~~L~~l~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~~~~  134 (134)
                      .++.+++|+.|++++|.+++.. |..++.+++|+.|++++|.+++..|
T Consensus       503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            6778899999999999999665 8899999999999999999988753

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.57  E-value=3.3e-15  Score=102.31  Aligned_cols=37  Identities=11%  Similarity=-0.064  Sum_probs=21.4

Q ss_pred             cCCcccEEEcCCCccCCCCccc---ccCCcEEEccCcccC
Q 045549            9 EVCRDIKIQFGKNSFDGIKKLP---WKNLEYLDFRSNLLQ   45 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~   45 (134)
                      .+++|+.|++++|.+.+++...   .++|++|++++|++.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  182 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL  182 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc
Confidence            4566666666666665544322   256666666666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.57  E-value=1.8e-14  Score=106.08  Aligned_cols=113  Identities=16%  Similarity=0.259  Sum_probs=67.6

Q ss_pred             cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc-------ccc
Q 045549           12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWP   84 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~   84 (134)
                      +|+.|++++|.++++|. .+++|+.|++++|.+++ +|..+++|++|++++|.+++ +|. +.  ++|+.       ...
T Consensus       121 ~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLPE-LPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES  194 (571)
T ss_dssp             TCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS
T ss_pred             CCCEEECCCCcCCCCCC-cCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc
Confidence            44444444444444444 33455555555555554 22235566666666666663 554 33  33333       224


Q ss_pred             CCccCcCCCCC-------cEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549           85 IPETLSKGSNL-------RTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH  134 (134)
Q Consensus        85 ~~~~~~~~~~L-------~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  134 (134)
                      +|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            454 433  56       88899999888 678888889999999999999987653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.57  E-value=9.6e-15  Score=111.62  Aligned_cols=127  Identities=16%  Similarity=0.117  Sum_probs=79.7

Q ss_pred             cccccCCcccEEEcCCCccCC-CCc-cc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCcc--ccC
Q 045549            5 EVTQEVCRDIKIQFGKNSFDG-IKK-LP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCL--ICN   75 (134)
Q Consensus         5 ~~~~~~~~L~~L~l~~n~l~~-~~~-~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~--~~~   75 (134)
                      ..+..+++|++|++++|.... ++. .+  .++|++|++++|.+++..|..   +++|++|++++|.+++..+..  ++.
T Consensus        42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  121 (844)
T 3j0a_A           42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN  121 (844)
T ss_dssp             SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred             hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence            345677777888887775544 533 33  277777888877777765554   677777788777777655543  666


Q ss_pred             CCCccc--------ccc-CCccCcCCCCCcEEEccCCccccCccccccCC--CCCcEEEcCCCcccc
Q 045549           76 LSTIEI--------PWP-IPETLSKGSNLRTLNFNGNELVGSVPRSLLNC--ENLQVVDLGNNKIED  131 (134)
Q Consensus        76 l~~L~~--------~~~-~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l--~~L~~L~l~~n~l~~  131 (134)
                      +++|+.        ... .+..++.+++|+.|++++|.+.+..+..+..+  ++|+.|++++|.+++
T Consensus       122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~  188 (844)
T 3j0a_A          122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS  188 (844)
T ss_dssp             CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred             cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc
Confidence            666666        111 22456777777777777777776555555544  445555555444444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.56  E-value=2.1e-14  Score=104.21  Aligned_cols=99  Identities=24%  Similarity=0.244  Sum_probs=53.0

Q ss_pred             cCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccCcccc-CCCCccc----cccCCccCcCCCCCcEEEccC
Q 045549           32 KNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIPCLIC-NLSTIEI----PWPIPETLSKGSNLRTLNFNG  102 (134)
Q Consensus        32 ~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~----~~~~~~~~~~~~~L~~l~l~~  102 (134)
                      ++|++|++++|.+++..|..    +++|++|++++|.+++..|..+. .+..|..    ...+|..+..+++|+.|++++
T Consensus       374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~  453 (520)
T 2z7x_B          374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVAS  453 (520)
T ss_dssp             TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCC
Confidence            44444444444444422211    34455555555554444443332 2222222    234566556677777777777


Q ss_pred             CccccCcccc-ccCCCCCcEEEcCCCcccc
Q 045549          103 NELVGSVPRS-LLNCENLQVVDLGNNKIED  131 (134)
Q Consensus       103 n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~  131 (134)
                      |.++ .+|.. +..+++|+.+++++|.+++
T Consensus       454 N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          454 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence            7777 45554 6677777777777777765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.55  E-value=4.2e-14  Score=94.94  Aligned_cols=118  Identities=18%  Similarity=0.247  Sum_probs=70.3

Q ss_pred             ccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc----
Q 045549            8 QEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI----   81 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----   81 (134)
                      ..+++|+.|++++|.++.++... +++|+.|++++|++++..+-. ++.|++|++++|++++ ++....  .+|+.    
T Consensus        38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~  114 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLD  114 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECC
T ss_pred             hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC-cCcccc--CcccEEEcc
Confidence            45667777777777777666322 367777777777777655422 6677777777777763 332211  33333    


Q ss_pred             ---cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           82 ---PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 ---~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                         ...+ +.++.+++|+.|++++|++++ ++ .+..+++|+.|++++|.+++
T Consensus       115 ~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          115 NNELRDT-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             SSCCSBS-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred             CCccCCC-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence               1122 235566666667776666663 33 46666666666666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.55  E-value=6.1e-14  Score=94.17  Aligned_cols=121  Identities=23%  Similarity=0.292  Sum_probs=98.7

Q ss_pred             cccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc----
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI----   81 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----   81 (134)
                      +..+++|+.|++++|.+++++... .++|+.|++++|++++..+...+.|++|++++|++++ ++ .+..+++|+.    
T Consensus        59 l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls  136 (263)
T 1xeu_A           59 MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRD-TD-SLIHLKNLEILSIR  136 (263)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSSCCSB-SG-GGTTCTTCCEEECT
T ss_pred             HhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCccccCcccEEEccCCccCC-Ch-hhcCcccccEEECC
Confidence            467899999999999999877622 3899999999999988543335889999999999994 43 5777777777    


Q ss_pred             ---cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           82 ---PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 ---~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                         ...++ .++.+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++.
T Consensus       137 ~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          137 NNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence               22333 578899999999999999955  6789999999999999998754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.54  E-value=1.7e-14  Score=99.10  Aligned_cols=118  Identities=14%  Similarity=0.088  Sum_probs=76.2

Q ss_pred             cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCcccc-CCCCccc------
Q 045549           12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLIC-NLSTIEI------   81 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~------   81 (134)
                      +|+.|++++|.+++++...+++++.|++++|++++..+..   +++|++|++++|.+++..+..+. .+++|+.      
T Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             TCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             CcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence            3444444444444333333466777777777777654433   67788888888887765555553 4555555      


Q ss_pred             -cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           82 -PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 -~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                       ...++ ....+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus       180 ~l~~~~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          180 FIYDVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             CCCEEE-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE
T ss_pred             cCcccc-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccc
Confidence             12222 2234788889999999888 556668888899999999998875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.54  E-value=4.7e-14  Score=95.98  Aligned_cols=120  Identities=17%  Similarity=0.210  Sum_probs=97.8

Q ss_pred             cccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc---
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      +..+++|+.|++++|.+++++... +++|+.|++++|.+++...-. +++|++|++++|.+++.  ..+..+++|+.   
T Consensus        86 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L  163 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL  163 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEc
Confidence            567899999999999998876532 389999999999998863222 89999999999999854  56777777776   


Q ss_pred             ----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           82 ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 ----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                          ...++. +..+++|+.|++++|.++ .++ .+..+++|+.|++++|.++.
T Consensus       164 ~~N~l~~~~~-l~~l~~L~~L~L~~N~i~-~l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          164 EDNQISDIVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CSSCCCCCGG-GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             cCCccccchh-hcCCCccCEEECCCCcCC-CCh-hhccCCCCCEEECcCCcccC
Confidence                223333 788999999999999999 455 48999999999999998864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.53  E-value=1.3e-14  Score=99.32  Aligned_cols=123  Identities=15%  Similarity=0.102  Sum_probs=75.0

Q ss_pred             ccCCcccEEEcCCCccCC-CCcc--c----ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccc--c--Cccc
Q 045549            8 QEVCRDIKIQFGKNSFDG-IKKL--P----WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTRE--I--PCLI   73 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~-~~~~--~----~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~--~--~~~~   73 (134)
                      ..+++|+.|++++|.+++ .+..  .    .++|++|++++|.+++..+..   ++.|++|++++|++.+.  .  +..+
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence            567788888888888876 3311  1    378888888888887766554   77888888888886531  1  1222


Q ss_pred             cCCCCccc-------cccCCc----cCcCCCCCcEEEccCCccccCccccccCC---CCCcEEEcCCCccc
Q 045549           74 CNLSTIEI-------PWPIPE----TLSKGSNLRTLNFNGNELVGSVPRSLLNC---ENLQVVDLGNNKIE  130 (134)
Q Consensus        74 ~~l~~L~~-------~~~~~~----~~~~~~~L~~l~l~~n~l~~~~p~~~~~l---~~L~~L~l~~n~l~  130 (134)
                      ..+++|+.       ...++.    .++.+++|+.|++++|.+.+..|..+..+   ++|+.|++++|+++
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence            34444444       111121    13445666666666666665555555554   46666666666665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.53  E-value=1.6e-13  Score=101.69  Aligned_cols=120  Identities=28%  Similarity=0.320  Sum_probs=63.4

Q ss_pred             cccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc---
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      +..+++|+.|++++|.+.+++... +++|+.|++++|.+++...-. ++.|++|++++|.+++ + ..+..+++|+.   
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~L  138 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL  138 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEEC
T ss_pred             HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEEC
Confidence            345667777777777776654421 366666666666666532211 5666666666666653 2 23444444444   


Q ss_pred             ----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           82 ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 ----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                          ...+ ..++.+++|+.|++++|.+.+..|  +..+++|+.|++++|.|++
T Consensus       139 s~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          139 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence                1111 234455555555555555553322  4555555555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.52  E-value=1.7e-13  Score=87.94  Aligned_cols=99  Identities=15%  Similarity=0.255  Sum_probs=84.4

Q ss_pred             cccEEEcCCCccCCCCcc--c--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc---
Q 045549           12 RDIKIQFGKNSFDGIKKL--P--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~--~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      +++.|++++|.+++++..  +  .++|++|++++|.+++..|..   ++.|++|++++|++++..+..+..+++|+.   
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            899999999999986653  3  389999999999999987765   889999999999999888888888888877   


Q ss_pred             -----cccCCccCcCCCCCcEEEccCCccccCcc
Q 045549           82 -----PWPIPETLSKGSNLRTLNFNGNELVGSVP  110 (134)
Q Consensus        82 -----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p  110 (134)
                           ....|..++.+++|+.+++++|.+.+..+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence                 34557889999999999999999986544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.52  E-value=9.7e-14  Score=96.00  Aligned_cols=99  Identities=24%  Similarity=0.253  Sum_probs=57.1

Q ss_pred             cCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc-------cccCCccCcCCCCCcEEEccCC
Q 045549           32 KNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWPIPETLSKGSNLRTLNFNGN  103 (134)
Q Consensus        32 ~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~~~~~~~~~~L~~l~l~~n  103 (134)
                      ++++.|++++|.+++..+-. +++|++|++++|.+++ + ..+..+++|+.       ...+ +.+..+++|+.|++++|
T Consensus       221 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          221 TRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS
T ss_pred             CcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCC
Confidence            55555666666555543322 5566666666666553 2 23444444444       1112 23556677777777777


Q ss_pred             ccccCccccccCCCCCcEEEcCCCcccccC
Q 045549          104 ELVGSVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus       104 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                      .+.+..+..+..+++|+.|++++|.+++..
T Consensus       298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             CCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred             cCCCcChhHhhccccCCEEEccCCcccccc
Confidence            776555666777777777777777776653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.51  E-value=1.3e-13  Score=102.43  Aligned_cols=116  Identities=24%  Similarity=0.338  Sum_probs=74.7

Q ss_pred             CcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc----cccCC
Q 045549           11 CRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI----PWPIP   86 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----~~~~~   86 (134)
                      ++|+.|++++|.++++|... ++++.|++++|.++. +|..+++|++|++++|.++ .+|..+.++..|..    ...+|
T Consensus       181 ~~L~~L~Ls~N~l~~l~~~~-~~L~~L~L~~N~l~~-l~~~~~~L~~L~Ls~N~L~-~lp~~l~~L~~L~Ls~N~L~~lp  257 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPTLP-SELYKLWAYNNRLTS-LPALPSGLKELIVSGNRLT-SLPVLPSELKELMVSGNRLTSLP  257 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCCC-TTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCC
T ss_pred             CCCcEEECCCCCCCCCCCcc-chhhEEECcCCcccc-cCCCCCCCCEEEccCCccC-cCCCCCCcCcEEECCCCCCCcCC
Confidence            34444444444444433321 344444444444443 2222467888888888887 46644444444444    22344


Q ss_pred             ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549           87 ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        87 ~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                      .   .+++|+.|++++|.++ .+|..+.++++|+.|++++|.+++.+
T Consensus       258 ~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~  300 (622)
T 3g06_A          258 M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT  300 (622)
T ss_dssp             C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred             c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence            4   5688999999999999 78999999999999999999998764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.51  E-value=7.6e-14  Score=96.56  Aligned_cols=120  Identities=20%  Similarity=0.315  Sum_probs=94.7

Q ss_pred             cccCCcccEEEcCCCccCCCCcc-cccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc---
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKL-PWKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      +..+++|+.|++++|.+++++.. ..++++.|++++|.+++...-. +++|++|++++|.+++ + ..+..+++|+.   
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFL  294 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred             hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEEC
Confidence            56788999999999999886652 2489999999999988753222 8999999999999985 3 45666777666   


Q ss_pred             -----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549           82 -----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        82 -----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                           ....+..++.+++|+.+++++|.+++..|  +..+++|+.+++++|.|+
T Consensus       295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence                 23445667889999999999999996544  889999999999999986

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=2.9e-14  Score=87.88  Aligned_cols=106  Identities=20%  Similarity=0.176  Sum_probs=85.6

Q ss_pred             ccccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc
Q 045549            6 VTQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI   81 (134)
Q Consensus         6 ~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~   81 (134)
                      .+..+++|+.|++++|.+++++... .+++++|++++|.+++..|..   +++|++|++++|.+++. +           
T Consensus        37 ~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~-~-----------  104 (149)
T 2je0_A           37 LTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL-S-----------  104 (149)
T ss_dssp             CCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSH-H-----------
T ss_pred             HHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCCh-H-----------
Confidence            3467899999999999998872221 389999999999999865554   89999999999998832 1           


Q ss_pred             cccCCccCcCCCCCcEEEccCCccccCcc---ccccCCCCCcEEEcCC
Q 045549           82 PWPIPETLSKGSNLRTLNFNGNELVGSVP---RSLLNCENLQVVDLGN  126 (134)
Q Consensus        82 ~~~~~~~~~~~~~L~~l~l~~n~l~~~~p---~~~~~l~~L~~L~l~~  126 (134)
                         .+..++.+++|+.+++++|.+++..+   ..+..+++|+.|++++
T Consensus       105 ---~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          105 ---TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ---HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ---HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence               13467778999999999999995543   3789999999999864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.50  E-value=2.5e-13  Score=100.67  Aligned_cols=121  Identities=17%  Similarity=0.204  Sum_probs=99.2

Q ss_pred             cccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc---
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      +..+++|+.|++++|.+.+++... +++|+.|++++|.+++...-. +++|+.|++++|.+++.  ..++.+++|+.   
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L  160 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL  160 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEEC
T ss_pred             hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEEC
Confidence            568899999999999998877433 489999999999998753322 89999999999999954  66777777776   


Q ss_pred             ----cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           82 ----PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 ----~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                          ...++. +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+.+.
T Consensus       161 s~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          161 EDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred             cCCcCCCchh-hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence                223333 7889999999999999995 44 689999999999999998764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.49  E-value=4.9e-13  Score=98.51  Aligned_cols=110  Identities=18%  Similarity=0.285  Sum_probs=55.8

Q ss_pred             cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCcccc-CCCCccc----cccCC
Q 045549           12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLIC-NLSTIEI----PWPIP   86 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~----~~~~~   86 (134)
                      +++.|++++|.++++|..+++++++|++++|.++.+ |..+++|++|++++|.+++ +|. +. .+..|..    ...+|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~i-p~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N~l~~lp  136 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISL-PELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNNQLTMLP  136 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCC-CCCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCC
T ss_pred             CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCccc-ccccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCCcCCCCC
Confidence            566666666666666665556666666666666643 3335666666666666663 444 33 2222222    11233


Q ss_pred             ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           87 ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        87 ~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      .   .+++|+.|++++|.+++ +|.   .+++|+.|++++|.+++
T Consensus       137 ~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~  174 (571)
T 3cvr_A          137 E---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF  174 (571)
T ss_dssp             C---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             C---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence            3   34445555555555542 333   33444444444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.48  E-value=4e-13  Score=96.56  Aligned_cols=40  Identities=18%  Similarity=0.273  Sum_probs=17.6

Q ss_pred             cCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           90 SKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        90 ~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      ..+++|+.|++++|.+++..|  +..+++|+.|++++|.+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            334444444444444443322  4444444444444444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.47  E-value=1.2e-12  Score=94.20  Aligned_cols=57  Identities=18%  Similarity=0.220  Sum_probs=22.5

Q ss_pred             CCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCCCCCccEEEcccCccc
Q 045549           10 VCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFT   66 (134)
Q Consensus        10 ~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~   66 (134)
                      +++|+.|++++|.++++|... ++++++|++++|.+++.....++.|++|++++|.++
T Consensus        41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~   98 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLT   98 (457)
T ss_dssp             HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCS
T ss_pred             cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCc
Confidence            344444444444444443211 144444444444444332111334444444444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.47  E-value=1.6e-12  Score=93.48  Aligned_cols=40  Identities=20%  Similarity=0.304  Sum_probs=21.1

Q ss_pred             CcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           89 LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        89 ~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      ++.+++|+.|++++|++++ +|  +..+++|+.|++++|.+++
T Consensus       208 l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          208 LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            3444555555555555553 33  4555555555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.46  E-value=6.3e-13  Score=95.53  Aligned_cols=40  Identities=30%  Similarity=0.331  Sum_probs=17.1

Q ss_pred             cCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           90 SKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        90 ~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      ..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+++
T Consensus       284 ~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          284 AGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             TTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSC
T ss_pred             cCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCC
Confidence            3444444444444444422 11 3444444444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.45  E-value=2.1e-12  Score=92.76  Aligned_cols=36  Identities=25%  Similarity=0.306  Sum_probs=21.5

Q ss_pred             CCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           94 NLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        94 ~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      +|+.|++++|.++ .+|. ++.+++|+.|++++|++++
T Consensus       216 ~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          216 SLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             TCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred             cccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc
Confidence            4555555555555 4453 5666667777777776665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.44  E-value=2.2e-12  Score=92.67  Aligned_cols=116  Identities=23%  Similarity=0.306  Sum_probs=58.5

Q ss_pred             ccCCcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc----
Q 045549            8 QEVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI----   81 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----   81 (134)
                      ..+++|++|++++|.++++|... .++++|++++|.+++. |..  +++|++|++++|.++ .+|.....+..|..    
T Consensus       150 ~~l~~L~~L~l~~N~l~~lp~~~-~~L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~~N~l~-~l~~~~~~L~~L~l~~n~  226 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLKKLPDLP-PSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAGNNI  226 (454)
T ss_dssp             TTCTTCCEEECCSSCCSCCCCCC-TTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCS-SCCCCCTTCCEEECCSSC
T ss_pred             CCCCCCCEEECCCCcCcccCCCc-ccccEEECcCCcCCcC-ccccCCCCCCEEECCCCcCC-cCCCCcCcccEEECcCCc
Confidence            34445555555555554444332 3455555555555542 222  555555555555555 23333333333322    


Q ss_pred             cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           82 PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 ~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      ...+| .++.+++|+.|++++|+++ .+|..   +++|+.|++++|.+++
T Consensus       227 l~~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          227 LEELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTD  271 (454)
T ss_dssp             CSSCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSC
T ss_pred             CCccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcccc
Confidence            22445 3667777888888888777 34432   2445555555555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.44  E-value=1.3e-14  Score=109.50  Aligned_cols=114  Identities=22%  Similarity=0.201  Sum_probs=85.1

Q ss_pred             ccccccccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCC
Q 045549            2 LEEEVTQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNL   76 (134)
Q Consensus         2 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l   76 (134)
                      ++..++ .+++|+.|+|++|.++.+|..+.  .+|++|++++|.++.+ |..   +++|++|++++|.++ .        
T Consensus       239 l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~-~--------  307 (727)
T 4b8c_D          239 ISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVT-T--------  307 (727)
T ss_dssp             CCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCC-C--------
T ss_pred             CChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCC-c--------
Confidence            344444 78999999999999999998763  9999999999999954 554   899999999999987 3        


Q ss_pred             CCccccccCCccCcCCCCCcEEEccCCccccCccccccCCCC-CcEEEcCCCcccccCC
Q 045549           77 STIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCEN-LQVVDLGNNKIEDILH  134 (134)
Q Consensus        77 ~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~~  134 (134)
                              +|..++.+++|+.|++++|.+++.+|..+..+.. ...+++++|.++|.+|
T Consensus       308 --------lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          308 --------LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             --------CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             --------cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence                    3555777888999999999998777766544321 1224445555554443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.44  E-value=1.7e-12  Score=83.44  Aligned_cols=98  Identities=19%  Similarity=0.224  Sum_probs=82.9

Q ss_pred             CcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc--------cccCCccCcCCCCCcEEEccCCcc
Q 045549           34 LEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI--------PWPIPETLSKGSNLRTLNFNGNEL  105 (134)
Q Consensus        34 L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l  105 (134)
                      -+.+++++|.++.+.......+++|++++|.++ .+|..+..+.+|+.        ....+..|..+++|+.|++++|.+
T Consensus        12 ~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            468899999988754444778999999999999 78888888888877        233345788999999999999999


Q ss_pred             ccCccccccCCCCCcEEEcCCCccccc
Q 045549          106 VGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus       106 ~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                      ++..|..|.++++|+.|++++|.+++.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~  117 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVV  117 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCee
Confidence            977677899999999999999999865

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.43  E-value=2.9e-12  Score=95.28  Aligned_cols=54  Identities=17%  Similarity=0.128  Sum_probs=30.7

Q ss_pred             CcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCCCCCccEEEcccCccc
Q 045549           11 CRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFT   66 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~   66 (134)
                      ++|+.|++++|.++.+|. ..++|++|++++|.++++. ..+++|++|++++|.++
T Consensus        61 ~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp-~~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLP-VLPPGLLELSIFSNPLT  114 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCC-CCCTTCCEEEECSCCCC
T ss_pred             CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCC-CCCCCCCEEECcCCcCC
Confidence            456666666666665555 3355666666666655432 24555666666655555

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.42  E-value=6.1e-13  Score=83.42  Aligned_cols=100  Identities=19%  Similarity=0.157  Sum_probs=82.4

Q ss_pred             ccCCcEEEccCcccC-CcCCCC---CCCccEEEcccCccccccCccccCCCCccc--------cccCCccCcCCCCCcEE
Q 045549           31 WKNLEYLDFRSNLLQ-GLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--------PWPIPETLSKGSNLRTL   98 (134)
Q Consensus        31 ~~~L~~L~l~~n~l~-~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l   98 (134)
                      .++++.|++++|.++ +.+|..   ++.|++|++++|.+++.  ..+..+++|+.        ...+|..++.+++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            378999999999998 444544   88999999999999855  77788888777        22366666679999999


Q ss_pred             EccCCccccCcc--ccccCCCCCcEEEcCCCcccccC
Q 045549           99 NFNGNELVGSVP--RSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        99 ~l~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                      ++++|.+++ +|  ..+..+++|+.|++++|.+++..
T Consensus       101 ~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~  136 (168)
T 2ell_A          101 NLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLN  136 (168)
T ss_dssp             ECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred             eccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchH
Confidence            999999994 44  68999999999999999998753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.41  E-value=1.6e-12  Score=90.07  Aligned_cols=100  Identities=19%  Similarity=0.203  Sum_probs=80.6

Q ss_pred             cEEEcCCC-ccCCCCcccc--cCCcEEEccC-cccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccccccCC
Q 045549           14 IKIQFGKN-SFDGIKKLPW--KNLEYLDFRS-NLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIP   86 (134)
Q Consensus        14 ~~L~l~~n-~l~~~~~~~~--~~L~~L~l~~-n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~   86 (134)
                      ..++++++ .++.+|. +.  .+|+.|++++ |.+++..+..   +++|++|+|++|++++..                |
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~----------------~   73 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA----------------P   73 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC----------------T
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC----------------H
Confidence            45789888 8988998 54  6799999996 9999876543   899999999999999432                4


Q ss_pred             ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           87 ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        87 ~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      ..|+.+++|+.|+|++|++++..+..+..++ |+.|++++|.+..
T Consensus        74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            5667789999999999999954344455555 9999999999864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.40  E-value=9.1e-13  Score=91.62  Aligned_cols=40  Identities=23%  Similarity=0.507  Sum_probs=25.8

Q ss_pred             CCCCcEEEccC-CccccCccc-cccCCCCCcEEEcCCCccccc
Q 045549           92 GSNLRTLNFNG-NELVGSVPR-SLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        92 ~~~L~~l~l~~-n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~  132 (134)
                      ..+++.+++.+ |.++ .+|. .|.++++|+.|++++|+|+..
T Consensus       176 ~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~l  217 (350)
T 4ay9_X          176 GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSL  217 (350)
T ss_dssp             TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred             ccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCcc
Confidence            34455555543 4444 4443 567788889999999888753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.37  E-value=8.6e-12  Score=78.80  Aligned_cols=101  Identities=14%  Similarity=0.131  Sum_probs=81.5

Q ss_pred             CCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc-------cccCC-ccCcCCCCCcEEEccCCc
Q 045549           33 NLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWPIP-ETLSKGSNLRTLNFNGNE  104 (134)
Q Consensus        33 ~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~~-~~~~~~~~L~~l~l~~n~  104 (134)
                      +.+.++++++.++.......+++++|++++|++++..+..+..+.+|+.       ...++ ..++.+++|+.|++++|.
T Consensus         8 ~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            4578899999988765444789999999999999666667787877777       22334 456889999999999999


Q ss_pred             cccCccccccCCCCCcEEEcCCCcccccC
Q 045549          105 LVGSVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus       105 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                      +++..+..+..+++|+.|++++|.+++..
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  116 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVP  116 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeC
Confidence            99665667899999999999999998653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.37  E-value=4.9e-15  Score=95.49  Aligned_cols=58  Identities=17%  Similarity=0.264  Sum_probs=38.5

Q ss_pred             cccCCcccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccc
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFT   66 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~   66 (134)
                      +..+++|+.|++++|.++++| .+  +++|++|++++|.++.. |..   +++|++|++++|+++
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~N~l~  106 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSC-SSHHHHHHHCSEEEEEEEECC
T ss_pred             HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccc-cchhhcCCcCCEEECcCCcCC
Confidence            345667777777777777666 33  27777777777777643 322   466777777777776

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.35  E-value=4.7e-12  Score=93.30  Aligned_cols=102  Identities=17%  Similarity=0.176  Sum_probs=83.8

Q ss_pred             cccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCcccc
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEIP   82 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~   82 (134)
                      +..+++|+.|++++|.++.+|..+.  ++|+.|++++|.++++ |..  +++|++|++++|++++..             
T Consensus       459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l-p~l~~l~~L~~L~Ls~N~l~~~~-------------  524 (567)
T 1dce_A          459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSA-------------  524 (567)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSSCCCSSS-------------
T ss_pred             ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC-cccCCCCCCcEEECCCCCCCCCC-------------
Confidence            5678899999999999999998764  9999999999999985 433  899999999999998432             


Q ss_pred             ccCCccCcCCCCCcEEEccCCccccCccc---cccCCCCCcEEEc
Q 045549           83 WPIPETLSKGSNLRTLNFNGNELVGSVPR---SLLNCENLQVVDL  124 (134)
Q Consensus        83 ~~~~~~~~~~~~L~~l~l~~n~l~~~~p~---~~~~l~~L~~L~l  124 (134)
                        .|..++.+++|+.|++++|.+++..|.   .+..+++|+.|++
T Consensus       525 --~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          525 --AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             --TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             --CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence              055677789999999999999965432   2345889999864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=1.1e-11  Score=78.04  Aligned_cols=86  Identities=16%  Similarity=0.227  Sum_probs=71.6

Q ss_pred             cCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccccCccc
Q 045549           32 KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPR  111 (134)
Q Consensus        32 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~  111 (134)
                      ...+.+++++|.++.+.....+.+++|++++|++++.                .|..++.+++|+.|++++|++++..+.
T Consensus         9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~----------------~~~~~~~l~~L~~L~Ls~N~l~~l~~~   72 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKL----------------EPGVFDRLTQLTRLDLDNNQLTVLPAG   72 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCC----------------CTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCcc----------------ChhhhcCcccCCEEECCCCCcCccChh
Confidence            3467899999999885444478899999999999832                255677889999999999999965556


Q ss_pred             cccCCCCCcEEEcCCCcccccC
Q 045549          112 SLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus       112 ~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                      .|.++++|+.|++++|+|++..
T Consensus        73 ~f~~l~~L~~L~L~~N~l~~~~   94 (170)
T 3g39_A           73 VFDKLTQLTQLSLNDNQLKSIP   94 (170)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCC
T ss_pred             hccCCCCCCEEECCCCccCEeC
Confidence            6899999999999999998754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.33  E-value=7.3e-12  Score=87.07  Aligned_cols=93  Identities=17%  Similarity=0.115  Sum_probs=45.8

Q ss_pred             cEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccC-ccccCCCCccc--------
Q 045549           14 IKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIP-CLICNLSTIEI--------   81 (134)
Q Consensus        14 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~--------   81 (134)
                      +.++.+++.++.+|..+..+++.|++++|+++.+.+..   +++|++|++++|.+.+.+| ..|..+.++..        
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            34555555555555555555555555555555443322   5555555555555543333 23444444332        


Q ss_pred             -cccCCccCcCCCCCcEEEccCCccc
Q 045549           82 -PWPIPETLSKGSNLRTLNFNGNELV  106 (134)
Q Consensus        82 -~~~~~~~~~~~~~L~~l~l~~n~l~  106 (134)
                       ....|..+..+++|+.+++++|.+.
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l~  117 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGIK  117 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred             ccccCchhhhhccccccccccccccc
Confidence             1112344555555555555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.31  E-value=7.3e-12  Score=79.15  Aligned_cols=96  Identities=17%  Similarity=0.119  Sum_probs=79.2

Q ss_pred             cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-------cccCCcc-CcCCCCCcEEEc
Q 045549           32 KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWPIPET-LSKGSNLRTLNF  100 (134)
Q Consensus        32 ~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~~~~-~~~~~~L~~l~l  100 (134)
                      .+++.|++++|.++.. +..   .++|++|++++|.+++.  ..+..+++|+.       ...+|.. ++.+++|+.|++
T Consensus        19 ~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             TSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            7899999999999875 433   45999999999999954  67777777777       2334544 478999999999


Q ss_pred             cCCccccCccc--cccCCCCCcEEEcCCCcccc
Q 045549          101 NGNELVGSVPR--SLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus       101 ~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~  131 (134)
                      ++|.+. .+|.  .+..+++|+.|++++|.++.
T Consensus        96 ~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~  127 (176)
T 1a9n_A           96 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN  127 (176)
T ss_dssp             CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             CCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC
Confidence            999997 6776  78999999999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.30  E-value=1.8e-13  Score=96.14  Aligned_cols=44  Identities=18%  Similarity=0.310  Sum_probs=26.2

Q ss_pred             cCcCCCCCcEEEccCCccc----cCccccccCCCCCcEEEcCCCcccc
Q 045549           88 TLSKGSNLRTLNFNGNELV----GSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        88 ~~~~~~~L~~l~l~~n~l~----~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      .+..+++|+.|++++|.++    +.+|..+..+++|+.|++++|.+++
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence            4555666666666666663    3455556666666666666666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=2.5e-11  Score=76.73  Aligned_cols=85  Identities=20%  Similarity=0.285  Sum_probs=70.1

Q ss_pred             CCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccccCcccc
Q 045549           33 NLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRS  112 (134)
Q Consensus        33 ~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~  112 (134)
                      .-+.+++++|.++.+.....+.+++|++++|++++.                .|..++.+++|+.|++++|++++..+..
T Consensus        13 ~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~----------------~~~~~~~l~~L~~L~Ls~N~l~~i~~~~   76 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKL----------------EPGVFDHLVNLQQLYFNSNKLTAIPTGV   76 (174)
T ss_dssp             CSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCC----------------CTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCcccc----------------CHHHhcCCcCCCEEECCCCCCCccChhH
Confidence            457899999999765444478899999999999832                2556788899999999999999554456


Q ss_pred             ccCCCCCcEEEcCCCcccccC
Q 045549          113 LLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus       113 ~~~l~~L~~L~l~~n~l~~~~  133 (134)
                      |.++++|+.|++++|+|++..
T Consensus        77 ~~~l~~L~~L~L~~N~l~~l~   97 (174)
T 2r9u_A           77 FDKLTQLTQLDLNDNHLKSIP   97 (174)
T ss_dssp             TTTCTTCCEEECCSSCCCCCC
T ss_pred             hCCcchhhEEECCCCccceeC
Confidence            799999999999999998753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.25  E-value=3.3e-13  Score=92.93  Aligned_cols=119  Identities=17%  Similarity=0.293  Sum_probs=52.3

Q ss_pred             CCcccEEEcCCCccCC--CCccc--ccCCcEEEccCcccCCcCCCC---CCCccEEEcccC-cccc-ccCccccCCCCcc
Q 045549           10 VCRDIKIQFGKNSFDG--IKKLP--WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNN-RFTR-EIPCLICNLSTIE   80 (134)
Q Consensus        10 ~~~L~~L~l~~n~l~~--~~~~~--~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n-~l~~-~~~~~~~~l~~L~   80 (134)
                      +++|+.|++++|.+++  ++..+  +++|++|++++|.+++..+..   +++|++|++++| .+++ .++..+..+++|+
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            3444555555544432  22221  245555555555444322211   445555555555 3432 1333333344333


Q ss_pred             c---c-c-c-----CCccCcCCC-CCcEEEccCC--ccc-cCccccccCCCCCcEEEcCCCc
Q 045549           81 I---P-W-P-----IPETLSKGS-NLRTLNFNGN--ELV-GSVPRSLLNCENLQVVDLGNNK  128 (134)
Q Consensus        81 ~---~-~-~-----~~~~~~~~~-~L~~l~l~~n--~l~-~~~p~~~~~l~~L~~L~l~~n~  128 (134)
                      .   . . .     ++..+..++ +|+.|++++|  .++ +.++..+.++++|+.|++++|.
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence            3   0 0 1     222234445 5555555555  232 2334445555666666666655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.25  E-value=7e-13  Score=91.27  Aligned_cols=121  Identities=15%  Similarity=0.161  Sum_probs=68.5

Q ss_pred             cccCCcccEEEcCCCccCC-CCccc--ccCCcEEEccCc-ccCCc-CCCC---CCCccEEEcccC-ccccc-cCccccCC
Q 045549            7 TQEVCRDIKIQFGKNSFDG-IKKLP--WKNLEYLDFRSN-LLQGL-FLDP---SSNMKVFLISNN-RFTRE-IPCLICNL   76 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~-~~~~~--~~~L~~L~l~~n-~l~~~-~~~~---l~~l~~L~l~~n-~l~~~-~~~~~~~l   76 (134)
                      +..+++|+.|++++|.+++ .+..+  +++|++|++++| .+++. .+..   +++|++|++++| .+++. ++..+..+
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            3456777777777777664 33332  367777777777 45431 2221   666777777777 66532 34444444


Q ss_pred             C-Cccc-----c------ccCCccCcCCCCCcEEEccCCc-cccCccccccCCCCCcEEEcCCC
Q 045549           77 S-TIEI-----P------WPIPETLSKGSNLRTLNFNGNE-LVGSVPRSLLNCENLQVVDLGNN  127 (134)
Q Consensus        77 ~-~L~~-----~------~~~~~~~~~~~~L~~l~l~~n~-l~~~~p~~~~~l~~L~~L~l~~n  127 (134)
                      + +|+.     .      ..++..+..+++|+.|++++|. +++..+..+..+++|+.|++++|
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            4 4444     1      1223344456666666666666 44444555666666666666666

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.24  E-value=7e-13  Score=93.14  Aligned_cols=122  Identities=17%  Similarity=0.252  Sum_probs=83.2

Q ss_pred             CcccEEEcCCCccCC--CCc---cc--ccCCcEEEccCcccCC-----cCC-CC--CCCccEEEcccCccc----cccCc
Q 045549           11 CRDIKIQFGKNSFDG--IKK---LP--WKNLEYLDFRSNLLQG-----LFL-DP--SSNMKVFLISNNRFT----REIPC   71 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~--~~~---~~--~~~L~~L~l~~n~l~~-----~~~-~~--l~~l~~L~l~~n~l~----~~~~~   71 (134)
                      ++|+.|++++|.++.  ++.   .+  .++|+.|++++|.++.     ..+ ..  +++|++|++++|.++    ..+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            677777777777762  442   11  2678888888887762     222 22  778888888888875    46666


Q ss_pred             cccCCCCccc----c--------ccCCccC--cCCCCCcEEEccCCcccc----Cccccc-cCCCCCcEEEcCCCccccc
Q 045549           72 LICNLSTIEI----P--------WPIPETL--SKGSNLRTLNFNGNELVG----SVPRSL-LNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        72 ~~~~l~~L~~----~--------~~~~~~~--~~~~~L~~l~l~~n~l~~----~~p~~~-~~l~~L~~L~l~~n~l~~~  132 (134)
                      .+..+++|+.    .        ..++..+  +.+++|+.|++++|.+.+    .+|..+ .++++|+.|++++|.+++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            7776666666    1        1134444  337888888888888885    367666 6678888888888888764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.22  E-value=1.6e-12  Score=90.76  Aligned_cols=14  Identities=21%  Similarity=0.318  Sum_probs=7.0

Q ss_pred             CCccEEEcccCccc
Q 045549           53 SNMKVFLISNNRFT   66 (134)
Q Consensus        53 ~~l~~L~l~~n~l~   66 (134)
                      ++|++|++++|.++
T Consensus       109 ~~L~~L~Ls~N~l~  122 (362)
T 3goz_A          109 FTITVLDLGWNDFS  122 (362)
T ss_dssp             TTCCEEECCSSCGG
T ss_pred             CCccEEECcCCcCC
Confidence            34555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.20  E-value=2.1e-12  Score=90.13  Aligned_cols=124  Identities=17%  Similarity=0.172  Sum_probs=78.5

Q ss_pred             ccCCcccEEEcCCCccCCCCc----cc---cc-CCcEEEccCcccCCcCCCC---C-----CCccEEEcccCccccccCc
Q 045549            8 QEVCRDIKIQFGKNSFDGIKK----LP---WK-NLEYLDFRSNLLQGLFLDP---S-----SNMKVFLISNNRFTREIPC   71 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~~~~----~~---~~-~L~~L~l~~n~l~~~~~~~---l-----~~l~~L~l~~n~l~~~~~~   71 (134)
                      ...++|+.|++++|.+++.+.    ..   .+ +++.|++++|.+++..+..   +     ++|++|++++|.+++..+.
T Consensus        19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            344569999999999988664    22   25 8999999999998765433   2     8899999999999866555


Q ss_pred             cccC----C-CCccc-------cccC-C----ccCcC-CCCCcEEEccCCccccC----ccccccCCC-CCcEEEcCCCc
Q 045549           72 LICN----L-STIEI-------PWPI-P----ETLSK-GSNLRTLNFNGNELVGS----VPRSLLNCE-NLQVVDLGNNK  128 (134)
Q Consensus        72 ~~~~----l-~~L~~-------~~~~-~----~~~~~-~~~L~~l~l~~n~l~~~----~p~~~~~l~-~L~~L~l~~n~  128 (134)
                      .+..    + ++|+.       .... +    ..+.. ..+|+.|++++|.+.+.    ++..+..++ +|+.|++++|.
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence            4332    2 44444       1111 1    11222 24677777777766632    223334444 66666666666


Q ss_pred             ccc
Q 045549          129 IED  131 (134)
Q Consensus       129 l~~  131 (134)
                      +++
T Consensus       179 l~~  181 (362)
T 3goz_A          179 LAS  181 (362)
T ss_dssp             GGG
T ss_pred             Cch
Confidence            654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.14  E-value=1.7e-10  Score=79.89  Aligned_cols=82  Identities=20%  Similarity=0.227  Sum_probs=68.4

Q ss_pred             cEEEccCc-ccCCcCCCC--CCCccEEEccc-CccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccccCcc
Q 045549           35 EYLDFRSN-LLQGLFLDP--SSNMKVFLISN-NRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVP  110 (134)
Q Consensus        35 ~~L~l~~n-~l~~~~~~~--l~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p  110 (134)
                      ..++.+++ .++.+.. .  +++|++|+|++ |.+++ ++               +..|+.+++|+.|+|++|++++..|
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~-~~---------------~~~~~~l~~L~~L~l~~N~l~~~~~   73 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQH-LE---------------LRDLRGLGELRNLTIVKSGLRFVAP   73 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCE-EC---------------GGGSCSCCCCSEEECCSSCCCEECT
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCC-cC---------------hhHhccccCCCEEECCCCccceeCH
Confidence            45688887 8887554 4  77899999996 99983 33               4567889999999999999998778


Q ss_pred             ccccCCCCCcEEEcCCCcccccC
Q 045549          111 RSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus       111 ~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                      ..|.++++|+.|++++|+|++..
T Consensus        74 ~~~~~l~~L~~L~l~~N~l~~~~   96 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNALESLS   96 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCC
T ss_pred             HHhcCCcCCCEEeCCCCccceeC
Confidence            88999999999999999998753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.14  E-value=1.6e-12  Score=92.80  Aligned_cols=122  Identities=18%  Similarity=0.200  Sum_probs=67.8

Q ss_pred             CCcccEEEcCCCccCC-----CCccc--ccCCcEEEccCcccCCcCCCC--------CCCccEEEcccCccccc----cC
Q 045549           10 VCRDIKIQFGKNSFDG-----IKKLP--WKNLEYLDFRSNLLQGLFLDP--------SSNMKVFLISNNRFTRE----IP   70 (134)
Q Consensus        10 ~~~L~~L~l~~n~l~~-----~~~~~--~~~L~~L~l~~n~l~~~~~~~--------l~~l~~L~l~~n~l~~~----~~   70 (134)
                      +++|+.|++++|.++.     ++..+  .++++.|++++|.++...+..        .+.|++|++++|.+++.    ++
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            4555555555555543     22222  255666666666554321111        24666666666666533    33


Q ss_pred             ccccCCCCccc----cc--------cCCccCcC-CCCCcEEEccCCcccc----CccccccCCCCCcEEEcCCCcccc
Q 045549           71 CLICNLSTIEI----PW--------PIPETLSK-GSNLRTLNFNGNELVG----SVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        71 ~~~~~l~~L~~----~~--------~~~~~~~~-~~~L~~l~l~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      ..+..+++|+.    ..        .+...+.. .++|+.|++++|.+++    .+|..+..+++|+.|++++|.+++
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            34444444444    00        11111211 5678888888888875    567777778888888888888765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.10  E-value=6.1e-13  Score=85.62  Aligned_cols=108  Identities=22%  Similarity=0.230  Sum_probs=86.1

Q ss_pred             ccccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccc
Q 045549            6 VTQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEI   81 (134)
Q Consensus         6 ~~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~   81 (134)
                      .+..+++|+.|++++|.++.+|....  +++++|++++|++++.. ..  +++|++|++++|.+++ ++.          
T Consensus        65 ~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~-~~~----------  132 (198)
T 1ds9_A           65 SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITN-WGE----------  132 (198)
T ss_dssp             CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCC-HHH----------
T ss_pred             ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCc-hhH----------
Confidence            34567899999999999998887653  89999999999998853 33  7899999999999883 221          


Q ss_pred             cccCCccCcCCCCCcEEEccCCccccCccc----------cccCCCCCcEEEcCCCcccc
Q 045549           82 PWPIPETLSKGSNLRTLNFNGNELVGSVPR----------SLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 ~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~----------~~~~l~~L~~L~l~~n~l~~  131 (134)
                          ...+..+++|+.+++++|.+.+..|.          .+..+++|+.||  +|.++.
T Consensus       133 ----~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          133 ----IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             ----HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             ----HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence                12466789999999999999866554          378899999987  676654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.02  E-value=2.2e-09  Score=73.90  Aligned_cols=78  Identities=19%  Similarity=0.183  Sum_probs=49.6

Q ss_pred             CCccEEEcccCccccccCccccCCCCccc------cccC-CccCcCCCCCc-EEEccCCccccCccccccCCCCCcEEEc
Q 045549           53 SNMKVFLISNNRFTREIPCLICNLSTIEI------PWPI-PETLSKGSNLR-TLNFNGNELVGSVPRSLLNCENLQVVDL  124 (134)
Q Consensus        53 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------~~~~-~~~~~~~~~L~-~l~l~~n~l~~~~p~~~~~l~~L~~L~l  124 (134)
                      ++|+.+++++|.++..-+..|..+.+|+.      ...+ +..|..+.+|+ .+.+.+ .++..-+.+|.++++|+.+++
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence            46777777777777555556666666665      1122 34566777777 777776 555333456777777777777


Q ss_pred             CCCcccc
Q 045549          125 GNNKIED  131 (134)
Q Consensus       125 ~~n~l~~  131 (134)
                      .+|.++.
T Consensus       305 ~~n~i~~  311 (329)
T 3sb4_A          305 TGDKITT  311 (329)
T ss_dssp             CSSCCCE
T ss_pred             CCCccCc
Confidence            7766643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.02  E-value=1.2e-09  Score=75.16  Aligned_cols=92  Identities=13%  Similarity=0.017  Sum_probs=71.3

Q ss_pred             cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCcc-c------cccC-CccCcCCCCCcEEEc
Q 045549           32 KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIE-I------PWPI-PETLSKGSNLRTLNF  100 (134)
Q Consensus        32 ~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~-~------~~~~-~~~~~~~~~L~~l~l  100 (134)
                      .+|+.+++++|.++.+....   +.+|+.+++..| +...-+.+|..+.+|+ .      ...+ +..|..|++|+.+++
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEe
Confidence            47888888888877654443   788999999988 7756777888888887 4      2223 467889999999999


Q ss_pred             cCCccccCccccccCCCCCcEEEc
Q 045549          101 NGNELVGSVPRSLLNCENLQVVDL  124 (134)
Q Consensus       101 ~~n~l~~~~p~~~~~l~~L~~L~l  124 (134)
                      ..|.++..-+.+|.++++|+.++.
T Consensus       305 ~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          305 TGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCCccCccchhhhcCCcchhhhcc
Confidence            999888444558999999998864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.98  E-value=2.1e-11  Score=87.02  Aligned_cols=74  Identities=15%  Similarity=0.134  Sum_probs=33.9

Q ss_pred             ccCCcccEEEcCCCccCC-----CCccc--ccCCcEEEccCcccCCcCCC----CCC----CccEEEcccCcccc----c
Q 045549            8 QEVCRDIKIQFGKNSFDG-----IKKLP--WKNLEYLDFRSNLLQGLFLD----PSS----NMKVFLISNNRFTR----E   68 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~-----~~~~~--~~~L~~L~l~~n~l~~~~~~----~l~----~l~~L~l~~n~l~~----~   68 (134)
                      ..+++|+.|++++|.++.     ++..+  .+++++|++++|.++...+.    .+.    +|++|++++|.++.    .
T Consensus        25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  104 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  104 (461)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence            345555666666555542     11111  15555555555554432111    022    45555555555542    3


Q ss_pred             cCccccCCCCccc
Q 045549           69 IPCLICNLSTIEI   81 (134)
Q Consensus        69 ~~~~~~~l~~L~~   81 (134)
                      ++..+..+++|+.
T Consensus       105 l~~~l~~~~~L~~  117 (461)
T 1z7x_W          105 LSSTLRTLPTLQE  117 (461)
T ss_dssp             HHHHTTSCTTCCE
T ss_pred             HHHHHccCCceeE
Confidence            3444444444444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.95  E-value=3.6e-11  Score=84.46  Aligned_cols=121  Identities=15%  Similarity=0.159  Sum_probs=73.8

Q ss_pred             CcccEEEcCCCccCC--CCccc--ccCCcEEEccCcccCCcCCC--------CCCCccEEEcccCccccc----cCcccc
Q 045549           11 CRDIKIQFGKNSFDG--IKKLP--WKNLEYLDFRSNLLQGLFLD--------PSSNMKVFLISNNRFTRE----IPCLIC   74 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~--~~~~~--~~~L~~L~l~~n~l~~~~~~--------~l~~l~~L~l~~n~l~~~----~~~~~~   74 (134)
                      ++|+.|++++|.++.  +....  ..+++.|++++|.++.....        ..+.|++|++++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            577777887777754  11111  26777888888876542111        135688888888877632    223334


Q ss_pred             CCCCccc------------cccCCccCcCCCCCcEEEccCCccccC----ccccccCCCCCcEEEcCCCcccc
Q 045549           75 NLSTIEI------------PWPIPETLSKGSNLRTLNFNGNELVGS----VPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        75 ~l~~L~~------------~~~~~~~~~~~~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      ..++|+.            ...+...+...++|+.|++++|.+...    +...+...++|+.|++++|.|++
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            4444444            112334455667888888888888642    23345566788888888888764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.86  E-value=3.5e-09  Score=77.77  Aligned_cols=121  Identities=12%  Similarity=0.045  Sum_probs=70.4

Q ss_pred             ccCCcccEEEcCCCccCCCCcc----c---ccCCcEEEccCcccCCcCCCC-------CCCccEEEcccCccccccCccc
Q 045549            8 QEVCRDIKIQFGKNSFDGIKKL----P---WKNLEYLDFRSNLLQGLFLDP-------SSNMKVFLISNNRFTREIPCLI   73 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~~~~~----~---~~~L~~L~l~~n~l~~~~~~~-------l~~l~~L~l~~n~l~~~~~~~~   73 (134)
                      ..+++|+.|++++|.+++....    .   +++|+.|++++|.+++.....       +++|++|++++|.+. .++..+
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~  239 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFF  239 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHH
T ss_pred             hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHH
Confidence            3678888888888887653221    1   378888888888876332211       678888888888877 355555


Q ss_pred             cCCCCccc---c--------ccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549           74 CNLSTIEI---P--------WPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        74 ~~l~~L~~---~--------~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                      ..+++|+.   .        ......+..+++|+.+++.++... .+|..+..+++|+.|++++|.++
T Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~  306 (592)
T 3ogk_B          240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLE  306 (592)
T ss_dssp             HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCC
T ss_pred             hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCC
Confidence            55555544   0        112233444455555555443222 34444555555555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.78  E-value=1.9e-10  Score=80.75  Aligned_cols=122  Identities=14%  Similarity=0.072  Sum_probs=85.4

Q ss_pred             CCcccEEEcCCCccCCCCcc-c-------ccCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccCcccc---
Q 045549           10 VCRDIKIQFGKNSFDGIKKL-P-------WKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIPCLIC---   74 (134)
Q Consensus        10 ~~~L~~L~l~~n~l~~~~~~-~-------~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~~~~~---   74 (134)
                      .+.++.|++++|.++..... +       ..+++.|++++|.++......    +.++++|++++|.++......++   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46799999999999762221 1       158999999999986532211    67899999999999754433332   


Q ss_pred             --CCCCccc------------cccCCccCcCCCCCcEEEccCCccccC----ccccccCCCCCcEEEcCCCcccc
Q 045549           75 --NLSTIEI------------PWPIPETLSKGSNLRTLNFNGNELVGS----VPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        75 --~l~~L~~------------~~~~~~~~~~~~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                        ....|+.            ...++..+..+++|+.|++++|.+...    ++..+...++|+.|++++|.|++
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence              1233333            112344456778899999999998742    24567778899999999999875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.72  E-value=7.5e-10  Score=70.60  Aligned_cols=113  Identities=9%  Similarity=0.013  Sum_probs=81.4

Q ss_pred             cccCCcccEEEcCCC-ccCC--CC---ccc--ccCCcEEEccCcccCCcCCC----C---CCCccEEEcccCccccccCc
Q 045549            7 TQEVCRDIKIQFGKN-SFDG--IK---KLP--WKNLEYLDFRSNLLQGLFLD----P---SSNMKVFLISNNRFTREIPC   71 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n-~l~~--~~---~~~--~~~L~~L~l~~n~l~~~~~~----~---l~~l~~L~l~~n~l~~~~~~   71 (134)
                      ....+.|+.|++++| .+..  +.   ..+  ..+++.|++++|.+......    .   .++|++|++++|.++..-..
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            456789999999999 8864  21   111  27899999999998743111    1   57899999999998743222


Q ss_pred             cccCCCCccccccCCccCcCCCCCcEEEc--cCCccccC----ccccccCCCCCcEEEcCCCcccc
Q 045549           72 LICNLSTIEIPWPIPETLSKGSNLRTLNF--NGNELVGS----VPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        72 ~~~~l~~L~~~~~~~~~~~~~~~L~~l~l--~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      .            +...+...+.|+.|++  ++|.+...    +...+...++|+.|++++|.+..
T Consensus       112 ~------------l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          112 A------------LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             H------------HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             H------------HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            2            2335566788999999  88998743    33456667899999999998853

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.58  E-value=3.3e-08  Score=72.57  Aligned_cols=120  Identities=15%  Similarity=0.098  Sum_probs=72.1

Q ss_pred             ccccCCcccEEEcCCCccCCCCc-----cc--ccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccc---cccCccc
Q 045549            6 VTQEVCRDIKIQFGKNSFDGIKK-----LP--WKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFT---REIPCLI   73 (134)
Q Consensus         6 ~~~~~~~L~~L~l~~n~l~~~~~-----~~--~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~---~~~~~~~   73 (134)
                      ++..+++|+.|++++|.++++..     .+  +++|+.|++++|.+.+.....  +++|++|+++.....   +.....+
T Consensus       187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence            45678999999999999975432     11  389999999999877632211  777888888753221   1222333


Q ss_pred             cCCCCccc-------cccCCccCcCCCCCcEEEccCCccccCcc-ccccCCCCCcEEEcC
Q 045549           74 CNLSTIEI-------PWPIPETLSKGSNLRTLNFNGNELVGSVP-RSLLNCENLQVVDLG  125 (134)
Q Consensus        74 ~~l~~L~~-------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p-~~~~~l~~L~~L~l~  125 (134)
                      ..+++|+.       ...+|..+..+++|+.|++++|.+.+... ..+.++++|+.|+++
T Consensus       267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            44444433       22344455556677777777666543222 234556666666655

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.48  E-value=1.5e-07  Score=63.24  Aligned_cols=76  Identities=22%  Similarity=0.228  Sum_probs=47.4

Q ss_pred             cCCcEEEccCcccCCcC--CCC---CCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccc
Q 045549           32 KNLEYLDFRSNLLQGLF--LDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELV  106 (134)
Q Consensus        32 ~~L~~L~l~~n~l~~~~--~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~  106 (134)
                      ++|+.|++++|+++++.  +..   +++|++|+|++|.+++.  ..+.             .+..+ +|+.|++.+|.++
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~-------------~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELD-------------KIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGG-------------GGTTS-CCSEEECTTSTTG
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhh-------------hcccC-CcceEEccCCcCc
Confidence            67777777777777643  222   77777777777777632  1111             12223 6777788777777


Q ss_pred             cCcc-------ccccCCCCCcEEE
Q 045549          107 GSVP-------RSLLNCENLQVVD  123 (134)
Q Consensus       107 ~~~p-------~~~~~l~~L~~L~  123 (134)
                      +.+|       ..+..+++|+.||
T Consensus       234 ~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          234 DTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             cccCcchhHHHHHHHHCcccCeEC
Confidence            5444       2356677777766

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.47  E-value=1.4e-06  Score=61.79  Aligned_cols=124  Identities=8%  Similarity=0.087  Sum_probs=73.7

Q ss_pred             cccccccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccc-----cccCcc
Q 045549            3 EEEVTQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFT-----REIPCL   72 (134)
Q Consensus         3 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~-----~~~~~~   72 (134)
                      +...|.++++|+.+.+..+ ++.++...+  .+++.+.+..+ ++.+....   +.+|+.+++.+|.+.     ..-+..
T Consensus       218 ~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a  295 (401)
T 4fdw_A          218 GSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC  295 (401)
T ss_dssp             CTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred             hhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence            4455666667777777653 444444433  55666666332 33322222   677888888776654     344566


Q ss_pred             ccCCCCccc------cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549           73 ICNLSTIEI------PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        73 ~~~l~~L~~------~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                      |..|.+|+.      ...+ ...|..|.+|+.+.+..+ ++..-..+|.++ +|+.+++.+|.+.
T Consensus       296 F~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          296 LEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             TTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             hhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            666666665      1122 345677788888888655 442334567777 7888888777553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.42  E-value=2.4e-06  Score=60.52  Aligned_cols=60  Identities=15%  Similarity=0.179  Sum_probs=34.9

Q ss_pred             ccccccccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC---CCCccEEEccc
Q 045549            2 LEEEVTQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISN   62 (134)
Q Consensus         2 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~   62 (134)
                      |+...|.++++|+.+++++|.++.++...+  .+++.+.+..+ ++.+....   +.+|+.+++..
T Consensus       171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          171 LKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             ECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             ehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            345567777888888888777776665543  56666666543 33222211   44555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.32  E-value=8.8e-07  Score=59.54  Aligned_cols=66  Identities=30%  Similarity=0.423  Sum_probs=46.0

Q ss_pred             CCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccccCccccccCCC--CCcEEEcCCCcc
Q 045549           52 SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCE--NLQVVDLGNNKI  129 (134)
Q Consensus        52 l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~--~L~~L~l~~n~l  129 (134)
                      ++.|+.|+|++|++++. +             .++..+..+++|+.|+|++|.+.+.  ..+..+.  +|+.|++++|.+
T Consensus       169 l~~L~~L~Ls~N~l~~l-~-------------~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl  232 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRL-D-------------DMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSL  232 (267)
T ss_dssp             CTTCCEEECTTSCCCCC-G-------------GGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTT
T ss_pred             CCCCCEEECCCCCCCCC-c-------------cchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcC
Confidence            67888888888888732 1             1244455678888888888888843  2233333  788888888888


Q ss_pred             cccC
Q 045549          130 EDIL  133 (134)
Q Consensus       130 ~~~~  133 (134)
                      .+.+
T Consensus       233 ~~~~  236 (267)
T 3rw6_A          233 CDTF  236 (267)
T ss_dssp             GGGC
T ss_pred             cccc
Confidence            7644

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.28  E-value=1.5e-07  Score=69.12  Aligned_cols=37  Identities=24%  Similarity=0.188  Sum_probs=23.9

Q ss_pred             CCCCCcEEEccCCccccCc-cccccCCCCCcEEEcCCC
Q 045549           91 KGSNLRTLNFNGNELVGSV-PRSLLNCENLQVVDLGNN  127 (134)
Q Consensus        91 ~~~~L~~l~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n  127 (134)
                      .+++|+.|++++|.+.+.. ...+..+++|+.|++++|
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            4567777777777765322 223557777777777766

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.23  E-value=1.9e-07  Score=68.56  Aligned_cols=59  Identities=14%  Similarity=0.093  Sum_probs=30.1

Q ss_pred             cCCcccEEEcCCCccCC-CCccc---ccCCcEEEccCc-ccCCc-CCC---CCCCccEEEcccCcccc
Q 045549            9 EVCRDIKIQFGKNSFDG-IKKLP---WKNLEYLDFRSN-LLQGL-FLD---PSSNMKVFLISNNRFTR   67 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~-~~~~~---~~~L~~L~l~~n-~l~~~-~~~---~l~~l~~L~l~~n~l~~   67 (134)
                      .+++|+.|++++|.+++ .+..+   +++|+.|++++| .++.. .+.   .+++|++|++++|.+++
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~  170 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD  170 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence            45566666666665544 22211   256666666666 33221 111   15566666666666553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.09  E-value=8.8e-07  Score=62.02  Aligned_cols=40  Identities=15%  Similarity=0.279  Sum_probs=22.7

Q ss_pred             CCCCcEEEccCCccccC----ccccccCCCCCcEEEcCCCcccc
Q 045549           92 GSNLRTLNFNGNELVGS----VPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        92 ~~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      +++|+.|+++.|.+.+.    ++..+.++++|+.|++++|.+++
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            45666666666666532    22233445666666666666653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.07  E-value=3.9e-07  Score=57.91  Aligned_cols=88  Identities=19%  Similarity=0.281  Sum_probs=64.8

Q ss_pred             cCCcEEEccCc-ccCCcCCC-------CCCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCC
Q 045549           32 KNLEYLDFRSN-LLQGLFLD-------PSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGN  103 (134)
Q Consensus        32 ~~L~~L~l~~n-~l~~~~~~-------~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n  103 (134)
                      ++++.|++++| .+......       ..++|++|++++|.+...-...+            ...+...+.|+.|++++|
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l------------~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL------------AEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH------------HHHHHHCSSCCEEECCSS
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH------------HHHHHhCCCcCEEECcCC
Confidence            78999999999 77642111       15789999999999873322221            233445678999999999


Q ss_pred             ccccC----ccccccCCCCCcEEEc--CCCcccc
Q 045549          104 ELVGS----VPRSLLNCENLQVVDL--GNNKIED  131 (134)
Q Consensus       104 ~l~~~----~p~~~~~l~~L~~L~l--~~n~l~~  131 (134)
                      .+...    +...+...++|+.|++  ++|.+++
T Consensus       104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            99843    3556777889999999  8899875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.04  E-value=5e-06  Score=58.23  Aligned_cols=123  Identities=15%  Similarity=0.144  Sum_probs=74.2

Q ss_pred             cCCcccEEEcCCCccCC----------CCccc--ccCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCcccc--
Q 045549            9 EVCRDIKIQFGKNSFDG----------IKKLP--WKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLIC--   74 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~----------~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~--   74 (134)
                      .+++|+.|.+.+.....          +...+  +++|+.|.+++|.-....+..+++|+.|++..+.+.......++  
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~  216 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGS  216 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHc
Confidence            46788888886653321          11111  27899999988731122221277888888888877533322332  


Q ss_pred             CCCCccc---c---c---------cCCccC--cCCCCCcEEEccCCccccCccccc---cCCCCCcEEEcCCCcccc
Q 045549           75 NLSTIEI---P---W---------PIPETL--SKGSNLRTLNFNGNELVGSVPRSL---LNCENLQVVDLGNNKIED  131 (134)
Q Consensus        75 ~l~~L~~---~---~---------~~~~~~--~~~~~L~~l~l~~n~l~~~~p~~~---~~l~~L~~L~l~~n~l~~  131 (134)
                      .+++|+.   .   .         .+...+  ..+++|+.|++.+|.+.+..+..+   ..+++|+.|+++.|.+++
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            3344433   0   0         011122  247899999999998874333333   357899999999999876

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.86  E-value=4.9e-05  Score=45.56  Aligned_cols=53  Identities=11%  Similarity=0.093  Sum_probs=45.7

Q ss_pred             cEEEcCCCccC--CCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccc
Q 045549           14 IKIQFGKNSFD--GIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFT   66 (134)
Q Consensus        14 ~~L~l~~n~l~--~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~   66 (134)
                      ..++.+++.++  .+|..+..+++.|++++|+++.+.+..   ++.|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47899999998  799888889999999999999876554   789999999999765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.41  E-value=2.9e-05  Score=49.83  Aligned_cols=111  Identities=12%  Similarity=0.137  Sum_probs=73.6

Q ss_pred             ccCCcccEEEcCCC-ccCC--C---Ccccc--cCCcEEEccCcccCCcCCCC-------CCCccEEEcccCccccccCcc
Q 045549            8 QEVCRDIKIQFGKN-SFDG--I---KKLPW--KNLEYLDFRSNLLQGLFLDP-------SSNMKVFLISNNRFTREIPCL   72 (134)
Q Consensus         8 ~~~~~L~~L~l~~n-~l~~--~---~~~~~--~~L~~L~l~~n~l~~~~~~~-------l~~l~~L~l~~n~l~~~~~~~   72 (134)
                      ..-+.|+.|+|++| .+..  .   .+.+.  ..++.|++++|.+.......       -++|++|+|++|.++..-...
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            45678999999985 6653  1   11111  78999999999987543222       568999999999988433322


Q ss_pred             ccCCCCccccccCCccCcCCCCCcEEEccCCc---ccc----CccccccCCCCCcEEEcCCCccc
Q 045549           73 ICNLSTIEIPWPIPETLSKGSNLRTLNFNGNE---LVG----SVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        73 ~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~---l~~----~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                      +            -+.+..-+.|+.|+++++.   +..    .+...+..-++|..|+++.|.+.
T Consensus       118 l------------a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          118 L------------LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             H------------HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             H------------HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            2            2344555779999998653   331    13345556678999999877653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.38  E-value=0.00058  Score=40.80  Aligned_cols=55  Identities=20%  Similarity=0.313  Sum_probs=33.7

Q ss_pred             cEEEccCcccC-CcCCCC-CCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCcc
Q 045549           35 EYLDFRSNLLQ-GLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNEL  105 (134)
Q Consensus        35 ~~L~l~~n~l~-~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l  105 (134)
                      ..++.+++.++ ..+|.. ..++++|+|++|+++ .++               +..|..+++|+.++|.+|.+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~-~l~---------------~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLT-ALP---------------PGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCS-SCC---------------TTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCC-ccC---------------hhhhhhccccCEEEecCCCe
Confidence            35667777766 124433 556778888888777 333               33445566667777777655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.38  E-value=0.0024  Score=44.76  Aligned_cols=119  Identities=14%  Similarity=0.095  Sum_probs=67.0

Q ss_pred             ccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc-
Q 045549            6 VTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI-   81 (134)
Q Consensus         6 ~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-   81 (134)
                      .+..+..++.+.+..+.. .+....+   ..++.+....+.+.........+|+.+.+..+ +...-..+|..+.+|+. 
T Consensus       248 ~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i  325 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI  325 (394)
T ss_dssp             TTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred             cccccccceeEEcCCCcc-eeeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence            344444555555544322 2222221   44455444444333322233667777777654 44344566767766665 


Q ss_pred             -----cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCC
Q 045549           82 -----PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN  127 (134)
Q Consensus        82 -----~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n  127 (134)
                           ...+ ..+|.+|.+|+.+.+..+ ++..-..+|.++.+|+.+++..+
T Consensus       326 ~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          326 DLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             EeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence                 1222 346778889999988776 55233457888889988887543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.28  E-value=4.2e-05  Score=48.25  Aligned_cols=34  Identities=12%  Similarity=0.096  Sum_probs=17.8

Q ss_pred             CCcEEEccCC-ccccCccccccCCCCCcEEEcCCC
Q 045549           94 NLRTLNFNGN-ELVGSVPRSLLNCENLQVVDLGNN  127 (134)
Q Consensus        94 ~L~~l~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n  127 (134)
                      +|+.|+++++ +++..--..+..+++|+.|+++++
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence            4566666654 344222223455666666666655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.22  E-value=0.0013  Score=46.09  Aligned_cols=120  Identities=12%  Similarity=0.084  Sum_probs=60.6

Q ss_pred             ccccccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCC---CCCCCccEEEcccCccccccCccccC
Q 045549            2 LEEEVTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFL---DPSSNMKVFLISNNRFTREIPCLICN   75 (134)
Q Consensus         2 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~---~~l~~l~~L~l~~n~l~~~~~~~~~~   75 (134)
                      |....|.++.+|+.+.+.. .++.+.+..+   .+|+.+.+..+ ++....   ..+..|+.+.+..+ +...-..+|..
T Consensus        62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~  138 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG  138 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence            4456788889999999975 4766766554   77888888655 332211   11445555444332 22122233333


Q ss_pred             CCCccc------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcC
Q 045549           76 LSTIEI------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLG  125 (134)
Q Consensus        76 l~~L~~------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~  125 (134)
                      +.....      ...-...|..+.+|+.+.+..+... .-...|.++.+|+.+.+.
T Consensus       139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~  193 (394)
T 4fs7_A          139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLP  193 (394)
T ss_dssp             CCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCC
T ss_pred             ccccccccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcC
Confidence            322221      0111234555666666666544322 223345555555555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.13  E-value=0.0033  Score=44.12  Aligned_cols=73  Identities=12%  Similarity=0.145  Sum_probs=31.6

Q ss_pred             cccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcC---CCCCCCccEEEcccCccccccCccccCCCC
Q 045549            5 EVTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLF---LDPSSNMKVFLISNNRFTREIPCLICNLST   78 (134)
Q Consensus         5 ~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~---~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~   78 (134)
                      ..|.++..|+.+.+..+. ..+....+   ..|+.+.+... ++...   ...+.+|+.+++..+ ++..-..+|..|.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEeccccc-ceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            345555666666665432 22333222   55565555422 22211   111456666666543 33222333444444


Q ss_pred             cc
Q 045549           79 IE   80 (134)
Q Consensus        79 L~   80 (134)
                      |+
T Consensus       336 L~  337 (394)
T 4gt6_A          336 LE  337 (394)
T ss_dssp             CC
T ss_pred             CC
Confidence            33

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.06  E-value=0.0036  Score=43.55  Aligned_cols=29  Identities=14%  Similarity=0.250  Sum_probs=14.3

Q ss_pred             CCCccEEEcccCccccccCccccCCCCcc
Q 045549           52 SSNMKVFLISNNRFTREIPCLICNLSTIE   80 (134)
Q Consensus        52 l~~l~~L~l~~n~l~~~~~~~~~~l~~L~   80 (134)
                      +.+|+.+.+.++.++..-..+|..+.+|+
T Consensus       285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          285 CSNLTKVVMDNSAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             CTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred             ccccccccccccccceehhhhhcCCCCCC
Confidence            45566666665555533333444444333

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.17  E-value=0.0009  Score=42.92  Aligned_cols=84  Identities=18%  Similarity=0.230  Sum_probs=58.2

Q ss_pred             cCCcEEEccCc-ccCCcCC----C---CCCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCC
Q 045549           32 KNLEYLDFRSN-LLQGLFL----D---PSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGN  103 (134)
Q Consensus        32 ~~L~~L~l~~n-~l~~~~~----~---~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n  103 (134)
                      ..|+.|++++| .+.....    .   .-+.|+.|+|++|.+.......+            .+.+..-+.|+.|+|+.|
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~al------------A~aL~~N~tL~~L~L~~N  108 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL------------IELIETSPSLRVLNVESN  108 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH------------HHHHHHCSSCCEEECCSS
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHH------------HHHHhcCCccCeEecCCC
Confidence            78999999986 6553111    1   15689999999999884433332            223444578999999999


Q ss_pred             ccccC----ccccccCCCCCcEEEcCCC
Q 045549          104 ELVGS----VPRSLLNCENLQVVDLGNN  127 (134)
Q Consensus       104 ~l~~~----~p~~~~~l~~L~~L~l~~n  127 (134)
                      .|...    +-..+..-+.|+.|++++|
T Consensus       109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          109 FLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             BCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            99742    2334555667999999865

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.57  E-value=0.054  Score=37.55  Aligned_cols=57  Identities=11%  Similarity=0.085  Sum_probs=33.6

Q ss_pred             ccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccC
Q 045549            6 VTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNN   63 (134)
Q Consensus         6 ~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n   63 (134)
                      .+.++..++.+.+..+ ++.++...+   .+|+.+.+.++.++.+....   +.+|+.+++..+
T Consensus       258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            3444555555555432 433444332   67888888877666443333   678888888654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.31  E-value=0.17  Score=35.33  Aligned_cols=75  Identities=11%  Similarity=0.202  Sum_probs=51.8

Q ss_pred             CCCccEEEcccCccccccCccccCCCCccc------cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEc
Q 045549           52 SSNMKVFLISNNRFTREIPCLICNLSTIEI------PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDL  124 (134)
Q Consensus        52 l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l  124 (134)
                      +..|+.+.+.. .+...-..+|..+.+|+.      ...+ ..+|.+|.+|+.+.+..+ ++..-..+|.++.+|+.+++
T Consensus       287 c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          287 CPALQDIEFSS-RITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             CTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred             ccccccccCCC-cccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence            56777777753 344355566777777766      1222 346888999999999765 55233557999999999999


Q ss_pred             CCCc
Q 045549          125 GNNK  128 (134)
Q Consensus       125 ~~n~  128 (134)
                      .++.
T Consensus       365 ~~~~  368 (394)
T 4gt6_A          365 SGSR  368 (394)
T ss_dssp             SSCH
T ss_pred             CCce
Confidence            8764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=94.34  E-value=0.064  Score=33.67  Aligned_cols=64  Identities=3%  Similarity=0.027  Sum_probs=44.8

Q ss_pred             CCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCc-cccCccccccCC----CCCcEEEcCC
Q 045549           52 SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNE-LVGSVPRSLLNC----ENLQVVDLGN  126 (134)
Q Consensus        52 l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~-l~~~~p~~~~~l----~~L~~L~l~~  126 (134)
                      -..|+.||++++.++..   .             -..+..+++|+.|+++++. ++..--..+..+    ++|+.|++++
T Consensus        60 ~~~L~~LDLs~~~Itd~---G-------------L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~  123 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSI---G-------------FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIIS  123 (176)
T ss_dssp             CCCEEEEEEESCCCCGG---G-------------GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEES
T ss_pred             CceEeEEeCcCCCccHH---H-------------HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCC
Confidence            44699999999987621   1             1234678999999999984 663322345554    4799999999


Q ss_pred             C-cccc
Q 045549          127 N-KIED  131 (134)
Q Consensus       127 n-~l~~  131 (134)
                      | ++++
T Consensus       124 C~~ITD  129 (176)
T 3e4g_A          124 CGNVTD  129 (176)
T ss_dssp             CTTCCH
T ss_pred             CCcCCH
Confidence            7 4765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 4e-06
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 70  PCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNK 128
                +L    I   +P+ L++   L +LN + N L G +P    N +   V    NNK
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 4e-04
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 12/126 (9%)

Query: 15  KIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLF-LDPSSNMKVFLISNNRFTREIPCL 72
            +    N    +  L     L  L   +N +  +  L   + +    ++ N+     P  
Sbjct: 245 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304

Query: 73  IC------NLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGN 126
                    L    I    P  +S  + L+ L F  N++  S   SL N  N+  +  G+
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGH 360

Query: 127 NKIEDI 132
           N+I D+
Sbjct: 361 NQISDL 366

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 21/99 (21%)

Query: 30  PWKNLEYLDFRSNLLQGL-FLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPET 88
             KNL YL    N +  +  +   + ++    +NN+ +                     +
Sbjct: 305 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS------------------DVSS 346

Query: 89  LSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNN 127
           L+  +N+  L+   N++    P  L N   +  + L + 
Sbjct: 347 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (77), Expect = 0.002
 Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 84  PIPETLSKGSNLRTLNFNGNEL----VGSVPRSLLNCENLQVVDLGNNKIEDI 132
              E L      + +  +   L       +  +L     L  ++L +N++ D+
Sbjct: 18  RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV 70

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 34.1 bits (76), Expect = 0.003
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 70  PCLICNLSTIEIPWPIPETLSKGSN--LRTLNFNGNELVGSVPRSLL-----NCENLQVV 122
             L   L +      + +  SK  N  L+TL    NE+     R+L         +L  +
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 123 DLGNNKIED 131
           +L  N+  +
Sbjct: 308 ELNGNRFSE 316

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.5 bits (75), Expect = 0.004
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 31  WKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNL--------STIEIP 82
            K L Y+      +  +      ++    +  N+ T+     +  L        S   I 
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 83  WPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI 132
                +L+   +LR L+ N N+LV  VP  L + + +QVV L NN I  I
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 257

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.76
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.75
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.74
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.71
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.68
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.63
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.56
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.53
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.52
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.49
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.41
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.36
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.35
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.3
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.19
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.18
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.12
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.03
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.94
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.27
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.23
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.11
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.09
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.02
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.13
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.13
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.98

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=7.7e-18  Score=106.85  Aligned_cols=121  Identities=17%  Similarity=0.115  Sum_probs=92.9

Q ss_pred             cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC----CCCccEEEcccCccccccCccccCCCCccc------
Q 045549           12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP----SSNMKVFLISNNRFTREIPCLICNLSTIEI------   81 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~----l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------   81 (134)
                      ..+.++.+++.++.+|+.+..++++|++++|++++..+..    ++.|+.|++++|.+....+..+..+.+|+.      
T Consensus         9 ~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             cCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            3456778888887788777777888888888876543332    677888888888877666677776666665      


Q ss_pred             --cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           82 --PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 --~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                        ....+..|.++++|+.|++++|++++..+.+|.++++|+++++++|.+...
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence              223355788999999999999999966677899999999999999988653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.75  E-value=2.4e-18  Score=116.32  Aligned_cols=48  Identities=19%  Similarity=0.362  Sum_probs=43.9

Q ss_pred             ccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccCC
Q 045549           87 ETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDILH  134 (134)
Q Consensus        87 ~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~  134 (134)
                      ..++.+++++.|++++|+++|.+|..++++++|++|++++|+|+|.||
T Consensus       238 ~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence            346677899999999999999999999999999999999999999987

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.2e-17  Score=109.47  Aligned_cols=118  Identities=19%  Similarity=0.236  Sum_probs=68.9

Q ss_pred             cccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc------
Q 045549           12 RDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI------   81 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~------   81 (134)
                      ++++|++++|.+++++...+   ++|+.|++++|.++.+.+.. +++|++|++++|+++ ..+..+..+++|+.      
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~  110 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN  110 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSS
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence            56677777777766554332   56667777777666543322 666666666666665 33444444444333      


Q ss_pred             -------------------------cccC-CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549           82 -------------------------PWPI-PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        82 -------------------------~~~~-~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                                               ...+ +..+..++.++.+++++|++++..+..+..+++|+.|++++|+|+
T Consensus       111 ~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence                                     1112 223445666777777777777554555667777777777777766

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-16  Score=106.82  Aligned_cols=129  Identities=19%  Similarity=0.211  Sum_probs=109.9

Q ss_pred             cccccccCCcccEEEcCCCccCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCC
Q 045549            3 EEEVTQEVCRDIKIQFGKNSFDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNL   76 (134)
Q Consensus         3 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l   76 (134)
                      +...+.++++|+.|++++|.+..++...+   .+++.+++++|.++...+..   ++.+++|++++|++.+..+..+..+
T Consensus        97 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l  176 (284)
T d1ozna_          97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL  176 (284)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             cchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccc
Confidence            44567889999999999999987655442   88999999999999876554   7889999999999997778888888


Q ss_pred             CCccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           77 STIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        77 ~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      ++|+.        ....|..++.+++++.+++++|.+.+..+..|.++++|+.+++++|.+.+
T Consensus       177 ~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             cccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            88877        34557889999999999999999997777789999999999999998875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.1e-16  Score=103.80  Aligned_cols=120  Identities=17%  Similarity=0.176  Sum_probs=84.9

Q ss_pred             cCCcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc----
Q 045549            9 EVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI----   81 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----   81 (134)
                      ....+.+++.+++.++.+|+.+.+++++|++++|++++..+..   +++|++|++++|+++ .++. ++.+++|+.    
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls   85 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLS   85 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECC
T ss_pred             ccCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-ccccccccccccc
Confidence            4456667899999999999988889999999999999875543   889999999999998 4543 456666666    


Q ss_pred             ---cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549           82 ---PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        82 ---~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                         ....+..+..+++|+.+++++|.+.+..+..+..+.+++.+++++|.++
T Consensus        86 ~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~  137 (266)
T d1p9ag_          86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK  137 (266)
T ss_dssp             SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred             cccccccccccccccccccccccccccceeeccccccccccccccccccccc
Confidence               2344556667777777777776665433334444444444444444443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.64  E-value=5.1e-16  Score=104.72  Aligned_cols=123  Identities=19%  Similarity=0.324  Sum_probs=104.8

Q ss_pred             cccEEEcCCCccCC---CCcccc--cCCcEEEccC-cccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc-
Q 045549           12 RDIKIQFGKNSFDG---IKKLPW--KNLEYLDFRS-NLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI-   81 (134)
Q Consensus        12 ~L~~L~l~~n~l~~---~~~~~~--~~L~~L~l~~-n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-   81 (134)
                      +++.|++++|.+.+   +|+.+.  ++|++|++++ |.+++.+|..   +++|++|++++|++.+..+..+..+.+|+. 
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            68899999999986   677764  8999999986 7888877765   899999999999999888888888877776 


Q ss_pred             -------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCC-cEEEcCCCcccccCC
Q 045549           82 -------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENL-QVVDLGNNKIEDILH  134 (134)
Q Consensus        82 -------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L-~~L~l~~n~l~~~~~  134 (134)
                             ...+|..++.++.++.+++++|.+.+.+|..+..+..+ +.+++++|+++|..|
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~  191 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP  191 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccc
Confidence                   44678889999999999999999998899988888875 889999999988654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=2.5e-15  Score=88.99  Aligned_cols=100  Identities=18%  Similarity=0.251  Sum_probs=81.0

Q ss_pred             cEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccccccCCccCc
Q 045549           14 IKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLS   90 (134)
Q Consensus        14 ~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~   90 (134)
                      ++|++++|+++.++..- ..++++|++++|+++...+..  +++|++|++++|.+++ +|                 .++
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~-l~-----------------~~~   62 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-----------------GVA   62 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-----------------GGT
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc-cC-----------------ccc
Confidence            57899999999877532 488999999999998764433  8999999999999882 22                 467


Q ss_pred             CCCCCcEEEccCCccccCcc--ccccCCCCCcEEEcCCCccccc
Q 045549           91 KGSNLRTLNFNGNELVGSVP--RSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        91 ~~~~L~~l~l~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                      .+++|+.+++++|+++ .++  ..+..+++|+.+++++|.+++.
T Consensus        63 ~l~~L~~L~l~~N~i~-~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          63 NLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             TCSSCCEEECCSSCCC-SSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             cccccCeEECCCCccC-CCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            7889999999999998 444  4688899999999999998753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.8e-15  Score=98.75  Aligned_cols=100  Identities=14%  Similarity=0.104  Sum_probs=53.9

Q ss_pred             CCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc--------cccCCccCcCCCCCcEEEcc
Q 045549           33 NLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI--------PWPIPETLSKGSNLRTLNFN  101 (134)
Q Consensus        33 ~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l~l~  101 (134)
                      +|+.|++++|.+....+..   ...|+.+++++|.+++..+..+..+.+|+.        ....+..+..+++|+.++++
T Consensus       106 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (284)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             cCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhh
Confidence            3444444444443332222   344555555555555333344444444433        11223455666667777777


Q ss_pred             CCccccCccccccCCCCCcEEEcCCCccccc
Q 045549          102 GNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus       102 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                      +|++.+..|..|.++++|+.|++++|.+++.
T Consensus       186 ~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~  216 (284)
T d1ozna_         186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (284)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             hccccccChhHhhhhhhcccccccccccccc
Confidence            7766655566677777777777777766654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.4e-15  Score=92.92  Aligned_cols=106  Identities=23%  Similarity=0.277  Sum_probs=71.8

Q ss_pred             ccCCcccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCcccccc
Q 045549            8 QEVCRDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPWP   84 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~   84 (134)
                      .+...+++|++++|.++.++...  ..+|+.|++++|.++....-. +++|++|++++|+++...+..+           
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~-----------   83 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLD-----------   83 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHH-----------
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccc-----------
Confidence            46678999999999999987643  389999999999998763322 8999999999999984322222           


Q ss_pred             CCccCcCCCCCcEEEccCCccccCcc--ccccCCCCCcEEEcCCCccc
Q 045549           85 IPETLSKGSNLRTLNFNGNELVGSVP--RSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        85 ~~~~~~~~~~L~~l~l~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~  130 (134)
                           ..+++|+.|++++|.++ .++  ..+..+++|+.+++++|.++
T Consensus        84 -----~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          84 -----QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             -----HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             -----ccccccccceecccccc-ccccccccccccccchhhcCCCccc
Confidence                 33455555555555554 222  23445555555555555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=3.7e-15  Score=94.26  Aligned_cols=102  Identities=14%  Similarity=0.278  Sum_probs=83.4

Q ss_pred             ccccC-CcccEEEcCCCccCC-CCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCC
Q 045549            6 VTQEV-CRDIKIQFGKNSFDG-IKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLS   77 (134)
Q Consensus         6 ~~~~~-~~L~~L~l~~n~l~~-~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~   77 (134)
                      +|+++ +++++|++++|.++. ++...+   ++|+.|++++|.+....+..   ++.|++|++++|++++..+..|..++
T Consensus        23 iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~  102 (192)
T d1w8aa_          23 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH  102 (192)
T ss_dssp             CCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred             cCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCC
Confidence            34444 478999999999987 555543   89999999999998876655   88999999999999977788889898


Q ss_pred             Cccc--------cccCCccCcCCCCCcEEEccCCcccc
Q 045549           78 TIEI--------PWPIPETLSKGSNLRTLNFNGNELVG  107 (134)
Q Consensus        78 ~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~  107 (134)
                      +|+.        ....+..|..+++|+.+++++|.+..
T Consensus       103 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            8887        23345678899999999999998864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=1.3e-13  Score=92.31  Aligned_cols=125  Identities=13%  Similarity=0.091  Sum_probs=101.8

Q ss_pred             cccccCCcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCccc
Q 045549            5 EVTQEVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEI   81 (134)
Q Consensus         5 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~   81 (134)
                      ..+..+++|+.+++++|.+..+|....++++.|++++|..++..+..   ++.+++|++++|.+++..+..+..+++|+.
T Consensus       144 ~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         144 GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  223 (305)
T ss_dssp             TGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             cccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccccee
Confidence            34667889999999999998888887899999999999888765544   788999999999999777888887777766


Q ss_pred             -------cccCCccCcCCCCCcEEEccCCccccCccc-c------ccCCCCCcEEEcCCCccc
Q 045549           82 -------PWPIPETLSKGSNLRTLNFNGNELVGSVPR-S------LLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        82 -------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~-~------~~~l~~L~~L~l~~n~l~  130 (134)
                             ...+|..+..+++|+.|++++|+++ .++. +      ...+.+|+.+++++|.++
T Consensus       224 L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         224 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             EECCSSCCSSCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             eecccccccccccccccccCCCEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcCc
Confidence                   3467788888999999999999998 4443 2      334677899999999885

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.52  E-value=1.3e-13  Score=92.40  Aligned_cols=77  Identities=27%  Similarity=0.374  Sum_probs=52.6

Q ss_pred             CccEEEcccCccccccCccccCCCCccc--------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcC
Q 045549           54 NMKVFLISNNRFTREIPCLICNLSTIEI--------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLG  125 (134)
Q Consensus        54 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~--------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~  125 (134)
                      +++.|++++|...+..+..+..+..++.        ....+..+..+++|+.|++++|+++ .+|..+.++++|++|+++
T Consensus       172 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred             ccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECC
Confidence            4444444444444444444444444433        2233556677889999999999998 778889999999999999


Q ss_pred             CCcccc
Q 045549          126 NNKIED  131 (134)
Q Consensus       126 ~n~l~~  131 (134)
                      +|+|+.
T Consensus       251 ~N~i~~  256 (305)
T d1xkua_         251 NNNISA  256 (305)
T ss_dssp             SSCCCC
T ss_pred             CCccCc
Confidence            998875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=1.3e-13  Score=88.14  Aligned_cols=119  Identities=24%  Similarity=0.279  Sum_probs=65.9

Q ss_pred             cCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc----c
Q 045549            9 EVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI----P   82 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~----~   82 (134)
                      .+++|+.|++++|.+++++... .++|++|++++|++++...-. ++.|+.+++++|.+. .+ ..+..+..++.    .
T Consensus        66 ~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~  143 (210)
T d1h6ta2          66 YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGN  143 (210)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCS
T ss_pred             hCCCCCEEeCCCccccCccccccCcccccccccccccccccccccccccccccccccccc-cc-cccccccccccccccc
Confidence            3445555555555554433221 245555555555554432111 455555555555443 11 12333333333    0


Q ss_pred             c--cCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           83 W--PIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        83 ~--~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      .  .-+..+..+++|+.+++++|.+++ ++ .+.++++|+.|++++|.+++
T Consensus       144 n~l~~~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         144 NKITDITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             SCCCCCGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB
T ss_pred             ccccccccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC
Confidence            0  112345567889999999998884 44 37889999999999998875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=4.1e-13  Score=85.13  Aligned_cols=42  Identities=33%  Similarity=0.549  Sum_probs=32.3

Q ss_pred             cCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           88 TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        88 ~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      .+..+++++.+++.+|++++ ++ .+.++++|+.|++++|++++
T Consensus       145 ~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         145 ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC
Confidence            45667788888888888773 33 47888889999999888876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=7.5e-13  Score=83.88  Aligned_cols=120  Identities=19%  Similarity=0.313  Sum_probs=95.4

Q ss_pred             cCCcccEEEcCCCccCCCCcc-cccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc-----
Q 045549            9 EVCRDIKIQFGKNSFDGIKKL-PWKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI-----   81 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-----   81 (134)
                      .+++++.|++++|.++.++.. .+++|++|++++|++++..+-. +++|++|++++|.+. .++ .+..+..|+.     
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFN  115 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCS
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCcccccccccccccc-ccc-ccccccccccccccc
Confidence            468999999999999887653 2599999999999999876533 899999999999887 444 3666666665     


Q ss_pred             -cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           82 -PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 -~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                       .......+..+++|+.+++++|.+. .++ .+..+++++.|++.+|++++.
T Consensus       116 ~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2         116 NQITDIDPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC
T ss_pred             cccccccccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCC
Confidence             1112235778899999999999988 444 588999999999999998764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=7.3e-13  Score=78.12  Aligned_cols=101  Identities=18%  Similarity=0.217  Sum_probs=79.1

Q ss_pred             cccCCcccEEEcCCCccCCCCcccc--cCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccccc
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPW   83 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~   83 (134)
                      +..+++|++|++++|.++++|+.+.  ++++.|++++|.++...+-. +++|+++++++|+++. ++             
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~-~~-------------   81 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ-SA-------------   81 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCS-SS-------------
T ss_pred             cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCC-CC-------------
Confidence            4678899999999999999987653  89999999999999864323 8999999999999983 22             


Q ss_pred             cCCccCcCCCCCcEEEccCCccccC--cc-ccccCCCCCcEE
Q 045549           84 PIPETLSKGSNLRTLNFNGNELVGS--VP-RSLLNCENLQVV  122 (134)
Q Consensus        84 ~~~~~~~~~~~L~~l~l~~n~l~~~--~p-~~~~~l~~L~~L  122 (134)
                       ....++.+++|+.+++++|.++..  .+ ..+..+++++.+
T Consensus        82 -~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          82 -AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             -TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             -CchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence             123567789999999999999742  12 234557777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=1.4e-12  Score=83.97  Aligned_cols=43  Identities=35%  Similarity=0.469  Sum_probs=34.7

Q ss_pred             cCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           88 TLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        88 ~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                      .++.+++|+.+++++|+++ .++ .+.++++|+.|++++|++++.
T Consensus       168 ~l~~l~~L~~L~Ls~n~l~-~l~-~l~~l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         168 PLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             hhcccccceecccCCCccC-CCh-hhcCCCCCCEEECcCCcCCCC
Confidence            3667888999999999888 444 378889999999999988764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=1.3e-12  Score=83.41  Aligned_cols=120  Identities=17%  Similarity=0.210  Sum_probs=96.1

Q ss_pred             cCCcccEEEcCCCccCCCCcc-cccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccc-----
Q 045549            9 EVCRDIKIQFGKNSFDGIKKL-PWKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEI-----   81 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-----   81 (134)
                      .+.+++.|++++|.++.++.. .+++|+.|++++|++++..+.. +++|++|++++|+++ .++ .++.+++|+.     
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTT
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCcccccccccccccc-ccc-ccccccccccccccc
Confidence            467899999999999886653 3599999999999999876555 899999999999998 455 4676777766     


Q ss_pred             -cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccccc
Q 045549           82 -PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDI  132 (134)
Q Consensus        82 -~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~  132 (134)
                       ...-...+..++.++.+++++|.+++  +..+..+++|+.+++++|.+++.
T Consensus       122 ~~~~~~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i  171 (210)
T d1h6ta2         122 NGISDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI  171 (210)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC
T ss_pred             ccccccccccccccccccccccccccc--ccccccccccccccccccccccc
Confidence             11123356778999999999999884  34578899999999999999864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.4e-13  Score=81.79  Aligned_cols=103  Identities=16%  Similarity=0.218  Sum_probs=83.1

Q ss_pred             cccccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCcc
Q 045549            5 EVTQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIE   80 (134)
Q Consensus         5 ~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~   80 (134)
                      ..+..+++|+.|++++|.++.++... .++|+.|++++|+++...+..   ++.+++|++++|+++ .++.         
T Consensus        35 ~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~---------  104 (162)
T d1a9na_          35 NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGD---------  104 (162)
T ss_dssp             CGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGG---------
T ss_pred             ccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccceecccccc-cccc---------
Confidence            34567899999999999998875432 489999999999999876643   899999999999987 2221         


Q ss_pred             ccccCCccCcCCCCCcEEEccCCccccCccc----cccCCCCCcEEE
Q 045549           81 IPWPIPETLSKGSNLRTLNFNGNELVGSVPR----SLLNCENLQVVD  123 (134)
Q Consensus        81 ~~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~----~~~~l~~L~~L~  123 (134)
                           -..+..+++|+.+++.+|.++ ..|.    .+..+++|++||
T Consensus       105 -----l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         105 -----LDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             -----GGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             -----ccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence                 124567899999999999998 4553    578899999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=3.6e-12  Score=87.17  Aligned_cols=122  Identities=24%  Similarity=0.314  Sum_probs=72.3

Q ss_pred             cCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccC----------------
Q 045549            9 EVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIP----------------   70 (134)
Q Consensus         9 ~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~----------------   70 (134)
                      ..++++.|++++|.++.++... .++++.+++++|.+++..+.. ++.|++++++++.+.+..+                
T Consensus       217 ~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~  296 (384)
T d2omza2         217 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ  296 (384)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred             ccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccccc
Confidence            4556777777777766654322 266677777777666554433 6666666666666553211                


Q ss_pred             ----ccccCCCCccc-------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccccC
Q 045549           71 ----CLICNLSTIEI-------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus        71 ----~~~~~l~~L~~-------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                          ..+..+..+..       ...++ .+..+++|+.|++++|+++ .++ .+.++++|++|++++|++++..
T Consensus       297 l~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         297 LEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             CSCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCG
T ss_pred             cccccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCCh
Confidence                01111222211       11122 2566788888888888887 444 5778888888888888887754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.6e-12  Score=77.91  Aligned_cols=102  Identities=19%  Similarity=0.166  Sum_probs=77.6

Q ss_pred             cccEEEcCCCccCCCCcccc--cCCcEEEccCcc-cCCcCCCC---CCCccEEEcccCccccccCccccCCCCccccccC
Q 045549           12 RDIKIQFGKNSFDGIKKLPW--KNLEYLDFRSNL-LQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPI   85 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~n~-l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~   85 (134)
                      ..+.++.+++.+..+|..+.  .+++.|++++|+ ++.+.+..   ++.|+.|++++|+++ .++               
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~---------------   72 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVA---------------   72 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EEC---------------
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC-Ccc---------------
Confidence            45568888888887776653  789999997664 77654433   889999999999988 333               


Q ss_pred             CccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCccc
Q 045549           86 PETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        86 ~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                      +..|..+++|+.|++++|+++ .+|.......+|+.|++++|.+.
T Consensus        73 ~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          73 PDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             TTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cccccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            556777889999999999999 66655444457999999999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=3.9e-12  Score=86.97  Aligned_cols=117  Identities=14%  Similarity=0.207  Sum_probs=82.6

Q ss_pred             cccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCC----------------------CC-CCCccEEEccc
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFL----------------------DP-SSNMKVFLISN   62 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~----------------------~~-l~~l~~L~l~~   62 (134)
                      +..+++++.+++++|.+++++... .++++.++++++.+++..+                      .. ++.++++++++
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~  316 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF  316 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCS
T ss_pred             hhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCC
Confidence            345667777777777776654422 3666777766666554321                      11 67889999999


Q ss_pred             CccccccCccccCCCCccc-------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCc
Q 045549           63 NRFTREIPCLICNLSTIEI-------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNK  128 (134)
Q Consensus        63 n~l~~~~~~~~~~l~~L~~-------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~  128 (134)
                      |++++..  .+..+++|+.       ...++ .++.+++|+.|++++|++++..|  +.++++|+.|++++|.
T Consensus       317 n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         317 NNISDIS--PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             SCCSCCG--GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCCCCCc--ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            9998543  2566666666       22333 58889999999999999995433  8999999999999984

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.6e-11  Score=79.40  Aligned_cols=32  Identities=16%  Similarity=0.330  Sum_probs=25.1

Q ss_pred             EccCCccccCccc-cccCCCCCcEEEcCCCcccc
Q 045549           99 NFNGNELVGSVPR-SLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        99 ~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~  131 (134)
                      .+.+|+++ .+|. .|.++++|++|++++|+++.
T Consensus       183 ~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~  215 (242)
T d1xwdc1         183 LSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS  215 (242)
T ss_dssp             CTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCC
T ss_pred             cccccccc-cccHHHhcCCCCCCEEECCCCcCCc
Confidence            45667777 5554 58889999999999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=2.4e-14  Score=91.02  Aligned_cols=105  Identities=20%  Similarity=0.269  Sum_probs=65.3

Q ss_pred             cccCCcccEEEcCCCccCCCCccc-ccCCcEEEccCcccCCcCCCC--CCCccEEEcccCccccccCccccCCCCccccc
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKLP-WKNLEYLDFRSNLLQGLFLDP--SSNMKVFLISNNRFTREIPCLICNLSTIEIPW   83 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~~~--l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~   83 (134)
                      +..+++|+.|++++|.++.++... +.+|+.|++++|.++.+.+..  ++.|++|++++|.++. ++             
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~-l~-------------  109 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-------------  109 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC-HH-------------
T ss_pred             HhcccccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccccccccccc-cc-------------
Confidence            345777888888888887775421 377888888888877643222  4568888888887772 22             


Q ss_pred             cCCccCcCCCCCcEEEccCCccccCcc--ccccCCCCCcEEEcCCCccc
Q 045549           84 PIPETLSKGSNLRTLNFNGNELVGSVP--RSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        84 ~~~~~~~~~~~L~~l~l~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~  130 (134)
                          .+..+++|+.|++++|+++ .++  ..+..+++|+.|++++|.+.
T Consensus       110 ----~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         110 ----GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             ----HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ----cccccccccccccccchhc-cccccccccCCCccceeecCCCccc
Confidence                2334455666666666665 333  24556666666666666553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.19  E-value=1.7e-10  Score=77.57  Aligned_cols=96  Identities=23%  Similarity=0.370  Sum_probs=71.5

Q ss_pred             cccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccccccCCccCcC
Q 045549           12 RDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSK   91 (134)
Q Consensus        12 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~   91 (134)
                      +++.|+++++.++.+|+. .+++++|++++|+++. +|..+.+|+.|++++|+++ .++..                   
T Consensus        39 ~l~~LdLs~~~L~~lp~~-~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~l~~n~l~-~l~~l-------------------   96 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL-PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLK-ALSDL-------------------   96 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC-CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-CCCSC-------------------
T ss_pred             CCCEEEeCCCCCCCCCCC-CCCCCEEECCCCCCcc-cccchhhhhhhhhhhcccc-hhhhh-------------------
Confidence            688999999999888864 4789999999999885 4666788999999999887 32211                   


Q ss_pred             CCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           92 GSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        92 ~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                      .+.|+.|++++|.+. .+|. ++.+++|+.+++++|.+++
T Consensus        97 p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_          97 PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSC
T ss_pred             ccccccccccccccc-cccc-hhhhccceeeccccccccc
Confidence            135777777777777 5554 4667777777777776654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.6e-11  Score=76.79  Aligned_cols=118  Identities=15%  Similarity=0.083  Sum_probs=81.1

Q ss_pred             ccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccC-ccccCCCCccc-------
Q 045549           13 DIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIP-CLICNLSTIEI-------   81 (134)
Q Consensus        13 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~-------   81 (134)
                      .+.++.++..++.+|+.+..++++|++++|.++.+.+..   +++|++|++++|.+...++ ..+..+..+..       
T Consensus        10 ~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             CCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            357888888888899887788999999999988765533   7889999999998765443 44555555444       


Q ss_pred             --cccCCccCcCCCCCcEEEccCCccccCccc-cccCCCCCcEEEcCCCccc
Q 045549           82 --PWPIPETLSKGSNLRTLNFNGNELVGSVPR-SLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        82 --~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~  130 (134)
                        ....+..+..+++|+.+++.+|.+....+. .+..++.+..+...++.+.
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~  141 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH  141 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCC
T ss_pred             cccccccccccccccccccccchhhhcccccccccccccccccccccccccc
Confidence              223345567888899999988888732221 2334455555555655554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.12  E-value=3e-10  Score=72.83  Aligned_cols=70  Identities=27%  Similarity=0.354  Sum_probs=51.7

Q ss_pred             CCCccEEEcccCccccccCccccCCCCccc-------cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEc
Q 045549           52 SSNMKVFLISNNRFTREIPCLICNLSTIEI-------PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDL  124 (134)
Q Consensus        52 l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-------~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l  124 (134)
                      ++++++|++++|.+....  .+..+++|+.       ...++ .++.+++|+.|++++|+++ .++ .+.++++|+.|++
T Consensus       150 ~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~N~lt-~i~-~l~~l~~L~~L~l  224 (227)
T d1h6ua2         150 LTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTL  224 (227)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEE
T ss_pred             ccccccccccccccccch--hhcccccceecccCCCccCCCh-hhcCCCCCCEEECcCCcCC-CCc-ccccCCCCCEEEe
Confidence            667888888888776332  2556666665       12233 3778999999999999999 455 3889999999998


Q ss_pred             CC
Q 045549          125 GN  126 (134)
Q Consensus       125 ~~  126 (134)
                      ++
T Consensus       225 sn  226 (227)
T d1h6ua2         225 TN  226 (227)
T ss_dssp             EE
T ss_pred             eC
Confidence            63

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.03  E-value=9.7e-13  Score=83.44  Aligned_cols=107  Identities=22%  Similarity=0.225  Sum_probs=81.8

Q ss_pred             cccCCcccEEEcCCCccCCCCccc--ccCCcEEEccCcccCCcCCCC-CCCccEEEcccCccccccCccccCCCCccccc
Q 045549            7 TQEVCRDIKIQFGKNSFDGIKKLP--WKNLEYLDFRSNLLQGLFLDP-SSNMKVFLISNNRFTREIPCLICNLSTIEIPW   83 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~   83 (134)
                      +..+++|+.|++++|.++.++...  .++|+.|++++|.++...+-. +++|++|++++|+++. ++.            
T Consensus        66 l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~-~~~------------  132 (198)
T d1m9la_          66 LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITN-WGE------------  132 (198)
T ss_dssp             HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEESEEECCC-HHH------------
T ss_pred             ccCCccccChhhcccccccccccccccccccccccccccccccccccccccccccccccchhcc-ccc------------
Confidence            467889999999999999888654  378999999999998753322 8899999999999872 220            


Q ss_pred             cCCccCcCCCCCcEEEccCCccccCccc----------cccCCCCCcEEEcCCCccc
Q 045549           84 PIPETLSKGSNLRTLNFNGNELVGSVPR----------SLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        84 ~~~~~~~~~~~L~~l~l~~n~l~~~~p~----------~~~~l~~L~~L~l~~n~l~  130 (134)
                        ...++.+++|+.|++++|.+....+.          .+..+++|+.||  +..++
T Consensus       133 --~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         133 --IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             --HHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             --cccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence              12467789999999999988743332          256789999987  44443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.9e-10  Score=67.24  Aligned_cols=82  Identities=16%  Similarity=0.170  Sum_probs=64.4

Q ss_pred             ccCCcccEEEcCCCc-cCCCCcccc---cCCcEEEccCcccCCcCCCC---CCCccEEEcccCccccccCccccCCCCcc
Q 045549            8 QEVCRDIKIQFGKNS-FDGIKKLPW---KNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFTREIPCLICNLSTIE   80 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~-l~~~~~~~~---~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~~~~~~~~~~l~~L~   80 (134)
                      ..+++++.|++.+|+ ++.++...+   ++|+.|++++|+++.+.+..   +++|++|++++|+++ .+|          
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~----------   96 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLS----------   96 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCC----------
T ss_pred             cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccC----------
Confidence            356799999997664 877877653   89999999999999876654   889999999999998 444          


Q ss_pred             ccccCCccCcCCCCCcEEEccCCccc
Q 045549           81 IPWPIPETLSKGSNLRTLNFNGNELV  106 (134)
Q Consensus        81 ~~~~~~~~~~~~~~L~~l~l~~n~l~  106 (134)
                           +..+. ...++.+++++|.+.
T Consensus        97 -----~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          97 -----WKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             -----STTTC-SCCCCEEECCSSCCC
T ss_pred             -----hhhhc-cccccccccCCCccc
Confidence                 22233 346889999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.94  E-value=1.7e-08  Score=67.56  Aligned_cols=121  Identities=21%  Similarity=0.211  Sum_probs=77.9

Q ss_pred             cccccCCcccEEEcCCCccCCCCcccccCCcEEEccCcccCCcCCCCCCCccEEEcccCccccccCccccCCCCccc---
Q 045549            5 EVTQEVCRDIKIQFGKNSFDGIKKLPWKNLEYLDFRSNLLQGLFLDPSSNMKVFLISNNRFTREIPCLICNLSTIEI---   81 (134)
Q Consensus         5 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~---   81 (134)
                      ++|+..++|++|++++|+++.+|+.+ .+|+.|++++|+++.+ +...+.|++|++++|.+. .+|. ++.+++|+.   
T Consensus        52 ~lp~~~~~L~~L~Ls~N~l~~lp~~~-~~L~~L~l~~n~l~~l-~~lp~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l  127 (353)
T d1jl5a_          52 SLPELPPHLESLVASCNSLTELPELP-QSLKSLLVDNNNLKAL-SDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDV  127 (353)
T ss_dssp             CCCSCCTTCSEEECCSSCCSSCCCCC-TTCCEEECCSSCCSCC-CSCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEEC
T ss_pred             CCCCCCCCCCEEECCCCCCcccccch-hhhhhhhhhhcccchh-hhhccccccccccccccc-cccc-hhhhccceeecc
Confidence            45666789999999999999998764 7899999999998754 333567999999999988 5553 455555555   


Q ss_pred             -cccCCccCcCCCCCcEEEccCCccccCccccccCCCCCcEEEcCCCcccc
Q 045549           82 -PWPIPETLSKGSNLRTLNFNGNELVGSVPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        82 -~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                       ...+.........+..+.+..+...  ....+..++.++.+++++|.+..
T Consensus       128 ~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         128 DNNSLKKLPDLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccccccccccccccchhhcccccc--ccccccccccceecccccccccc
Confidence             1111111122334445554444332  12345556666777776665543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2e-09  Score=74.39  Aligned_cols=109  Identities=12%  Similarity=0.125  Sum_probs=77.5

Q ss_pred             CcccEEEcCCCccCC--CCccc--ccCCcEEEccCcccCCcC----C---CCCCCccEEEcccCccccccCccccCCCCc
Q 045549           11 CRDIKIQFGKNSFDG--IKKLP--WKNLEYLDFRSNLLQGLF----L---DPSSNMKVFLISNNRFTREIPCLICNLSTI   79 (134)
Q Consensus        11 ~~L~~L~l~~n~l~~--~~~~~--~~~L~~L~l~~n~l~~~~----~---~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L   79 (134)
                      ++|++|++++|++++  +.+.+  .+++++|++++|.++...    .   ...++|++||+++|.++......+      
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l------   75 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV------   75 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH------
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHH------
Confidence            478999999999986  33322  389999999999877321    1   127889999999998862111111      


Q ss_pred             cccccCCccCc-CCCCCcEEEccCCccccC----ccccccCCCCCcEEEcCCCcccc
Q 045549           80 EIPWPIPETLS-KGSNLRTLNFNGNELVGS----VPRSLLNCENLQVVDLGNNKIED  131 (134)
Q Consensus        80 ~~~~~~~~~~~-~~~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~  131 (134)
                            ...+. ...+|+.|++++|.++..    ++..+..+++|+.|++++|.+++
T Consensus        76 ------~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          76 ------LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             ------HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             ------HHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence                  11221 235799999999998743    34567788999999999998864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=4.5e-09  Score=69.55  Aligned_cols=124  Identities=14%  Similarity=0.184  Sum_probs=60.2

Q ss_pred             cccCCcccEEEcCCCccCC-CCccc--ccCCcEEEccCc-ccCCcC----CCCCCCccEEEcccC-cccc-ccCcccc--
Q 045549            7 TQEVCRDIKIQFGKNSFDG-IKKLP--WKNLEYLDFRSN-LLQGLF----LDPSSNMKVFLISNN-RFTR-EIPCLIC--   74 (134)
Q Consensus         7 ~~~~~~L~~L~l~~n~l~~-~~~~~--~~~L~~L~l~~n-~l~~~~----~~~l~~l~~L~l~~n-~l~~-~~~~~~~--   74 (134)
                      ++.+++|++|++++|.+++ ....+  .++|+.|++++| .++...    ...++.|++|+++++ .++. .+...+.  
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            4456677777777776554 22222  266777777764 333210    011567777777765 2321 1111111  


Q ss_pred             --CCCCcccc---cc-----CCccCcCCCCCcEEEccCC-ccccCccccccCCCCCcEEEcCCC-ccc
Q 045549           75 --NLSTIEIP---WP-----IPETLSKGSNLRTLNFNGN-ELVGSVPRSLLNCENLQVVDLGNN-KIE  130 (134)
Q Consensus        75 --~l~~L~~~---~~-----~~~~~~~~~~L~~l~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n-~l~  130 (134)
                        .+..|...   ..     +......+++|+.|+++++ .+++.....+..+++|+.|+++++ .++
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~  214 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  214 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCC
Confidence              12222111   00     1112234566667776654 455444455666666666666663 444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.1e-07  Score=62.71  Aligned_cols=120  Identities=10%  Similarity=0.140  Sum_probs=70.3

Q ss_pred             ccCCcccEEEcCCC-ccCC--CCccc--ccCCcEEEccCcc-cCCc-CC----CCCCCccEEEcccCc--ccc-ccCccc
Q 045549            8 QEVCRDIKIQFGKN-SFDG--IKKLP--WKNLEYLDFRSNL-LQGL-FL----DPSSNMKVFLISNNR--FTR-EIPCLI   73 (134)
Q Consensus         8 ~~~~~L~~L~l~~n-~l~~--~~~~~--~~~L~~L~l~~n~-l~~~-~~----~~l~~l~~L~l~~n~--l~~-~~~~~~   73 (134)
                      ..+++|+.|++++| .+++  +....  +++|+.|+++++. ++.. ..    ...+.|+.|+++++.  ++. .+....
T Consensus        92 ~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~  171 (284)
T d2astb2          92 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV  171 (284)
T ss_dssp             TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred             hcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccc
Confidence            45678888888875 3432  22211  3778888888763 3211 00    114567777777542  321 122222


Q ss_pred             cCCCCccc---------cccCCccCcCCCCCcEEEccC-CccccCccccccCCCCCcEEEcCCC
Q 045549           74 CNLSTIEI---------PWPIPETLSKGSNLRTLNFNG-NELVGSVPRSLLNCENLQVVDLGNN  127 (134)
Q Consensus        74 ~~l~~L~~---------~~~~~~~~~~~~~L~~l~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n  127 (134)
                      ..+++|+.         .+.....+.++++|+.|++++ +.+++.....++.+++|+.|++.++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            33444443         122344566788899999988 4666554556778889999998876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.27  E-value=6.6e-08  Score=65.17  Aligned_cols=41  Identities=17%  Similarity=0.271  Sum_probs=19.5

Q ss_pred             cCCCCCcEEEccCCccccC----ccccccCCCCCcEEEcCCCccc
Q 045549           90 SKGSNLRTLNFNGNELVGS----VPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        90 ~~~~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                      ..++.|+.|++++|.+...    +...+..+++|++|++++|.++
T Consensus       212 ~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         212 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             cchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            3445555555555554311    2223444555555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.2e-07  Score=57.68  Aligned_cols=59  Identities=12%  Similarity=0.209  Sum_probs=35.0

Q ss_pred             ccCCcccEEEcCCCccCCCCccc-----ccCCcEEEccCcccCCcCCCC---CCCccEEEcccCccc
Q 045549            8 QEVCRDIKIQFGKNSFDGIKKLP-----WKNLEYLDFRSNLLQGLFLDP---SSNMKVFLISNNRFT   66 (134)
Q Consensus         8 ~~~~~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~---l~~l~~L~l~~n~l~   66 (134)
                      +.+++|++|++++|.++.++...     +++|+.|++++|.++......   ...++.+++++|.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            45666777777777776654321     266777777777666543211   345666666666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=8.9e-08  Score=65.94  Aligned_cols=38  Identities=32%  Similarity=0.408  Sum_probs=18.7

Q ss_pred             CCCcEEEccCCccccC----ccccccCCCCCcEEEcCCCccc
Q 045549           93 SNLRTLNFNGNELVGS----VPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        93 ~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                      ..|+.|++++|.++..    +...+..+++|++|++++|.|+
T Consensus       369 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             CCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            4455555555555421    2233444455555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.6e-07  Score=57.09  Aligned_cols=84  Identities=23%  Similarity=0.235  Sum_probs=53.7

Q ss_pred             cCCcEEEccCcccCCcCCCC-----CCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCCccc
Q 045549           32 KNLEYLDFRSNLLQGLFLDP-----SSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELV  106 (134)
Q Consensus        32 ~~L~~L~l~~n~l~~~~~~~-----l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~  106 (134)
                      +++++|++++|+++...+..     +++|++|++++|+++ .++..               .......++.+++.+|.++
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l---------------~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SEREL---------------DKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGH---------------HHHTTCCCSSCCCTTSTTS
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhh---------------hhhhccccceeecCCCCcC
Confidence            67888888888887654321     778888888888877 22210               1112345777888888887


Q ss_pred             cCcc-------ccccCCCCCcEEEcCCCcccccC
Q 045549          107 GSVP-------RSLLNCENLQVVDLGNNKIEDIL  133 (134)
Q Consensus       107 ~~~p-------~~~~~l~~L~~L~l~~n~l~~~~  133 (134)
                      ....       ..+..+++|+.||  |..+..+|
T Consensus       129 ~~~~~~~~y~~~i~~~~P~L~~LD--g~~v~p~~  160 (162)
T d1koha1         129 DTFRDQSTYISAIRERFPKLLRLD--GHELPPPI  160 (162)
T ss_dssp             SSSSSHHHHHHHHHTTSTTCCEET--TEECCCCC
T ss_pred             cCcccchhHHHHHHHHCCCCCEEC--cCCCcCCC
Confidence            5433       2356778888776  55555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.09  E-value=5.8e-07  Score=54.74  Aligned_cols=110  Identities=11%  Similarity=0.110  Sum_probs=75.7

Q ss_pred             ccCCcccEEEcCCC-ccCC--CCccc-----ccCCcEEEccCcccCCcCCCC-------CCCccEEEcccCccccccCcc
Q 045549            8 QEVCRDIKIQFGKN-SFDG--IKKLP-----WKNLEYLDFRSNLLQGLFLDP-------SSNMKVFLISNNRFTREIPCL   72 (134)
Q Consensus         8 ~~~~~L~~L~l~~n-~l~~--~~~~~-----~~~L~~L~l~~n~l~~~~~~~-------l~~l~~L~l~~n~l~~~~~~~   72 (134)
                      .+.+.|+.|+++++ .+..  +....     ..+++.|++++|.++......       .+.|++|++++|.++..-...
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            46789999999974 4543  22111     178999999999887432221       678999999999987432222


Q ss_pred             ccCCCCccccccCCccCcCCCCCcEEEccCCccccC-------ccccccCCCCCcEEEcCCCcc
Q 045549           73 ICNLSTIEIPWPIPETLSKGSNLRTLNFNGNELVGS-------VPRSLLNCENLQVVDLGNNKI  129 (134)
Q Consensus        73 ~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-------~p~~~~~l~~L~~L~l~~n~l  129 (134)
                                  +-..+...++|+.|++.+|.+...       +..++...++|+.++++.+..
T Consensus        92 ------------l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          92 ------------LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             ------------HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             ------------HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence                        233566678999999998865521       334556678899999987654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.02  E-value=1.1e-06  Score=59.02  Aligned_cols=39  Identities=21%  Similarity=0.325  Sum_probs=23.6

Q ss_pred             CCCcEEEccCCccccC----ccccc-cCCCCCcEEEcCCCcccc
Q 045549           93 SNLRTLNFNGNELVGS----VPRSL-LNCENLQVVDLGNNKIED  131 (134)
Q Consensus        93 ~~L~~l~l~~n~l~~~----~p~~~-~~l~~L~~L~l~~n~l~~  131 (134)
                      ..++.|++++|.+...    +...+ .+.++|+.|++++|++..
T Consensus       273 ~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            5577777777776532    12223 245677777777777643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.13  E-value=1.5e-05  Score=48.08  Aligned_cols=112  Identities=9%  Similarity=0.025  Sum_probs=73.0

Q ss_pred             cccCCcccEEEcCC-CccCC--CCccc-----ccCCcEEEccCcccCCcCCCC-------CCCccEEEcccCccccccCc
Q 045549            7 TQEVCRDIKIQFGK-NSFDG--IKKLP-----WKNLEYLDFRSNLLQGLFLDP-------SSNMKVFLISNNRFTREIPC   71 (134)
Q Consensus         7 ~~~~~~L~~L~l~~-n~l~~--~~~~~-----~~~L~~L~l~~n~l~~~~~~~-------l~~l~~L~l~~n~l~~~~~~   71 (134)
                      ..+.+.|+.|++++ +.++.  +....     .++++.|++++|.++...-..       ..+++.+++++|.++.....
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            45678999999987 44543  21111     278999999999876431111       67899999999887633222


Q ss_pred             cccCCCCccccccCCccCcCCCCCcEEEc--cCCcccc----CccccccCCCCCcEEEcCCCccc
Q 045549           72 LICNLSTIEIPWPIPETLSKGSNLRTLNF--NGNELVG----SVPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus        72 ~~~~l~~L~~~~~~~~~~~~~~~L~~l~l--~~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                      .            +...+...++++.+++  ++|.+..    .+...+...++|+.|+++.+...
T Consensus        93 ~------------l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          93 A------------LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             H------------HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             H------------HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence            2            2334556677877666  4566642    23445667889999999877543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.13  E-value=3.9e-05  Score=46.35  Aligned_cols=87  Identities=17%  Similarity=0.204  Sum_probs=59.6

Q ss_pred             cCCcEEEccCc-ccCCcCC-------CCCCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCC
Q 045549           32 KNLEYLDFRSN-LLQGLFL-------DPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGN  103 (134)
Q Consensus        32 ~~L~~L~l~~n-~l~~~~~-------~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n  103 (134)
                      ++++.|+++++ .++...-       ...+.|++|++++|.+.......+            .+.+...+.|+.|++++|
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~l------------a~~L~~n~~L~~L~L~~n   82 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL------------IELIETSPSLRVLNVESN   82 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH------------HHHHHHCSSCCEEECCSS
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHH------------hhhhhhcccccceeeehh
Confidence            67999999874 4443110       115679999999998873322222            223445688999999999


Q ss_pred             ccccC----ccccccCCCCCcEEEcCCCccc
Q 045549          104 ELVGS----VPRSLLNCENLQVVDLGNNKIE  130 (134)
Q Consensus       104 ~l~~~----~p~~~~~l~~L~~L~l~~n~l~  130 (134)
                      .+...    +-..+...++|+.|++++|.+.
T Consensus        83 ~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          83 FLTPELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             BCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             hcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            98742    2234667788999999988654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.98  E-value=0.0017  Score=38.66  Aligned_cols=88  Identities=19%  Similarity=0.288  Sum_probs=58.1

Q ss_pred             cCCcEEEccC-cccCCcCC-------CCCCCccEEEcccCccccccCccccCCCCccccccCCccCcCCCCCcEEEccCC
Q 045549           32 KNLEYLDFRS-NLLQGLFL-------DPSSNMKVFLISNNRFTREIPCLICNLSTIEIPWPIPETLSKGSNLRTLNFNGN  103 (134)
Q Consensus        32 ~~L~~L~l~~-n~l~~~~~-------~~l~~l~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~~~~~~~~~~L~~l~l~~n  103 (134)
                      ++++.|++++ +.++...-       ...+.|++|++++|.++......+            -..+...++++.++++++
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L------------~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL------------AEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH------------HHHHHHCSSCCEEECCSS
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHH------------HHHHhhcccchhhhhccc
Confidence            7899999997 44543211       116789999999998873322222            223445678999999998


Q ss_pred             ccccC----ccccccCCCCCcEEEcC--CCcccc
Q 045549          104 ELVGS----VPRSLLNCENLQVVDLG--NNKIED  131 (134)
Q Consensus       104 ~l~~~----~p~~~~~l~~L~~L~l~--~n~l~~  131 (134)
                      .+...    +...+...++++.++++  +|.+..
T Consensus        85 ~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~  118 (166)
T d1io0a_          85 FISGSGILALVEALQSNTSLIELRIDNQSQPLGN  118 (166)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             cccchhHHHHHHHHHhCccccEEeeccCCCcCcH
Confidence            87632    23456777889886664  566643