Citrus Sinensis ID: 045559

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
MVVEILSKFPVKSLLRFRCVCKSWYELFESPSFISKHLKAGNSNTRLILRYVDSSDDPEYPRLRYCLFLDPTLANISLEEDLILLIPIEEHFRGPFEGLFIMFIGGDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYDPNSEEIIDFQHK
cHHHHHHcccHHHccEEEEccccHHHHHccHHHHHHHHHcccccccEEEEEEccccccccccccEEccccccccccccccccccccccccEEEEEEccEEEEEEcccEEEEEEcccccEEEcccccccccccccEEEEEEEccccccccEEEEEEEEEEccccccccccccEEEEEEcccccEEEEcccccccccccccccEEEEcccEEEEEEccccccccccEEEEEEEccccEEEEEcccccccccccccEEEEEEccEEEEEEEcccccEEEEEEEcccccEEEEEEEcccccccccEEEEEccEEEEEEcccEEEEEEccccEEEEcccc
cHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccEEEEEEcccccccccccEEEEccccccccccccccccccccccEEEEEEcccEEEEEEEccccEEEEccccccEEEcccccccccccccEEEEEEEccccccccEEEEEEEEccccccccccccccEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccccEEEEEEEcccccEEEEEcccccccccccEEEEEEEccEEEEEEEccccccEEEEEEccccccEEEEEEcccccccccEEEEEccEEEEEEcccEEEEEEcccccEEEEccc
MVVEIlskfpvksllRFRCVCKSWyelfespsfiskhlkagnsnTRLILRYvdssddpeyprlryclfldptlanisleeDLILlipieehfrgpfeGLFIMFIGGDeialynhatrdlkflpkltliDNLESIYTIMFGlgldpkcnyYKLVYIVTYhdselgkvlnDSRQVFIYSFsdnswrnfqgfefgmydldevldctyhngachwlvpfgafhplCCHYVILSFDMSDEVFEeilgpnclleispkhtvfglyndslsflvfderescFDIWTMKERyhwtkefsttpilavdapigfwkndtFFIRSNTeelllydpnseeiiDFQHK
mvveilskfpvksllRFRCVCKSWYELFESPSFISKHLKAGNSNTRLILRYVDSSDDPEYPRLRYCLFLDPTLANISLEEDLILLIPIEEHFRGPFEGLFIMFIGGDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEelllydpnseeiidfqhk
MVVEILSKFPVKSLLRFRCVCKSWYELFESPSFISKHLKAGNSNTRLILRYVDSSDDPEYPRLRYCLFLDPTLANisleedlillipieeHFRGPFEGLFIMFIGGDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYDPNSEEIIDFQHK
**VEILSKFPVKSLLRFRCVCKSWYELFESPSFISKHLKAGNSNTRLILRYVDSSDDPEYPRLRYCLFLDPTLANISLEEDLILLIPIEEHFRGPFEGLFIMFIGGDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYDP***********
MVVEILSKFPVKSLLRFRCVCKSWYELFESPSFISKHLKAGNSNTRLILRYVDSSDDPEYPRLRYCLFLDPTLANISLEEDLILLIPIEEHFRGPFEGLFIMFIGGDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYDPNSEEIIDFQHK
MVVEILSKFPVKSLLRFRCVCKSWYELFESPSFISKHLKAGNSNTRLILRYVDSSDDPEYPRLRYCLFLDPTLANISLEEDLILLIPIEEHFRGPFEGLFIMFIGGDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYDPNSEEIIDFQHK
MVVEILSKFPVKSLLRFRCVCKSWYELFESPSFISKHLKAGNSNTRLILRYVDSSDDPEYPRLRYCLFLDPTLANISLEEDLILLIPIEEHFRGPFEGLFIMFIGGDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYDPNSEEIIDFQHK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVVEILSKFPVKSLLRFRCVCKSWYELFESPSFISKHLKAGNSNTRLILRYVDSSDDPEYPRLRYCLFLDPTLANISLEEDLILLIPIEEHFRGPFEGLFIMFIGGDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNTEELLLYDPNSEEIIDFQHK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query335 2.2.26 [Sep-21-2011]
Q9SU30413 F-box protein CPR30 OS=Ar yes no 0.958 0.777 0.242 3e-10
O49420431 F-box/kelch-repeat protei no no 0.823 0.640 0.243 1e-09
Q8GXC7427 F-box/kelch-repeat protei no no 0.907 0.711 0.247 2e-09
O49421411 F-box protein At4g19940 O no no 0.477 0.389 0.3 3e-09
Q9LIR8364 F-box/kelch-repeat protei no no 0.850 0.782 0.255 7e-09
Q9FJJ4420 F-box protein At5g62510 O no no 0.797 0.635 0.234 1e-08
Q4PSN6410 F-box/WD-40 repeat-contai no no 0.761 0.621 0.254 2e-08
Q9SAB5363 Putative F-box/LRR-repeat no no 0.811 0.749 0.242 4e-08
Q9LV12379 Putative F-box protein At no no 0.782 0.691 0.244 5e-08
Q9FGS3357 Putative F-box protein At no no 0.698 0.655 0.263 1e-07
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function desciption
 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 151/359 (42%), Gaps = 38/359 (10%)

Query: 1   MVVEILSKFPVKSLLRFRCVCKSWYELFESPSFISKHLK---AGNSNTRLILRYVDSSDD 57
           +V +I  + P K+L+R R + K  Y L   P FI  HL        +  ++LR       
Sbjct: 8   IVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGA----- 62

Query: 58  PEYPRLR-YCLFLDPTLANISLEEDLILLIPIEEHFRGPFEGLFIMFIGGDEIALYNHAT 116
                LR Y + LD   +   +E  +    P E    G   GL  +     ++A++N +T
Sbjct: 63  -----LRLYSVDLDSLDSVSDVEHPMKRGGPTEVF--GSSNGLIGLSNSPTDLAVFNPST 115

Query: 117 RDLKFLP--KLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYH-DSELGKVLNDSRQV 173
           R +  LP   + L D   +   + +GLG D   + YK+V +V +  DSE     +   +V
Sbjct: 116 RQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEV 175

Query: 174 FIYSFSDNSWRNFQG--------FEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHY 225
            ++S   NSW+  +         F F  + L           + HW++P      L    
Sbjct: 176 KVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRP--GLIAFN 233

Query: 226 VILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKE--- 282
           +I+ FD++ E FE +  P  +   +    +     D    L+ +  +S  D+W MKE   
Sbjct: 234 LIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNV 293

Query: 283 RYHWTKEFSTTPILAVDA-----PIGFWKN-DTFFIRSNTEELLLYDPNSEEIIDFQHK 335
           R  WTK F+     +V +     P+ + K+     +  N  +L+ +D  S+++   + K
Sbjct: 294 RDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTLRIK 352
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|O49420|FBK86_ARATH F-box/kelch-repeat protein At4g19930 OS=Arabidopsis thaliana GN=At4g19930 PE=1 SV=1 Back     alignment and function description
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function description
>sp|O49421|FB238_ARATH F-box protein At4g19940 OS=Arabidopsis thaliana GN=At4g19940 PE=4 SV=1 Back     alignment and function description
>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1 Back     alignment and function description
>sp|Q9FJJ4|FB298_ARATH F-box protein At5g62510 OS=Arabidopsis thaliana GN=At5g62510 PE=2 SV=1 Back     alignment and function description
>sp|Q4PSN6|FBW1_ARATH F-box/WD-40 repeat-containing protein 1 OS=Arabidopsis thaliana GN=FBW1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SAB5|FBLK2_ARATH Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana GN=At1g11620 PE=4 SV=1 Back     alignment and function description
>sp|Q9LV12|FB299_ARATH Putative F-box protein At5g62660 OS=Arabidopsis thaliana GN=At5g62660 PE=4 SV=1 Back     alignment and function description
>sp|Q9FGS3|FB287_ARATH Putative F-box protein At5g50220 OS=Arabidopsis thaliana GN=At5g50220 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
224119696367 predicted protein [Populus trichocarpa] 0.934 0.852 0.324 5e-33
224133722 443 predicted protein [Populus trichocarpa] 0.946 0.715 0.318 1e-29
224117590 441 f-box family protein [Populus trichocarp 0.913 0.693 0.332 2e-29
117939133416 S locus F-box protein with the low allel 0.901 0.725 0.296 4e-27
29420813397 F-box [Prunus mume] 0.955 0.806 0.281 2e-25
117939139407 S locus F-box protein with the low allel 0.955 0.786 0.284 2e-25
296090345423 unnamed protein product [Vitis vinifera] 0.850 0.673 0.285 3e-24
147785389 485 hypothetical protein VITISV_041940 [Viti 0.928 0.641 0.278 3e-22
113129068376 SLF-like protein 1 [Antirrhinum majus] 0.859 0.765 0.321 9e-22
148923044388 class S F-box protein [Nicotiana alata] 0.955 0.824 0.287 1e-21
>gi|224119696|ref|XP_002318137.1| predicted protein [Populus trichocarpa] gi|222858810|gb|EEE96357.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 173/342 (50%), Gaps = 29/342 (8%)

Query: 1   MVVEILSKFPVKSLLRFRCVCKSWYELFESPSFISKHLKAGNSNTR---LILRYVDSSDD 57
           +++EILS  PVK+LL+F+CVCKSWY +  S +FIS HL    +N +   L+  +V     
Sbjct: 13  VIIEILSLLPVKTLLQFKCVCKSWYGIITSSNFISLHLNNHYNNIKSGHLLAHFV----- 67

Query: 58  PEYPRLRYCLFLDPTLANISLEEDLILLIPIEEHFRGPFEGLFIMFIGGDEIA---LYNH 114
              P+L   LF D +L ++S +    L  PI     GP  G+F  ++  ++ +   L+N 
Sbjct: 68  --CPQLLE-LFQDESLTDLSHQG---LDPPIRGRLCGPCNGIF--YVDSEDSSGSGLWNP 119

Query: 115 ATRDLKFLP-KLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQV 173
           AT++ K LP K+    +L   Y   +G G DP  N YK+V I   +  E       S  V
Sbjct: 120 ATKEFKLLPEKIRNKSSLPLYYEDSYGFGFDPVTNDYKVVVIRESYTREYYLEKFPSSLV 179

Query: 174 FIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMS 233
            +Y+   +SWR +   + G Y L      T  +G  +W    G         VILSF+M+
Sbjct: 180 IVYTLRTDSWRCWGSLDQG-YTLLGNYCYTNVDGVYYWQAGHGVHMN-----VILSFNMA 233

Query: 234 DEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKERYHWTKEFSTT 293
            + F+EI  P+   +     T   LY+DS++F      E   DIW + E   W ++F + 
Sbjct: 234 TDAFQEIQEPD--YDKPAYSTRLILYHDSIAFSTVHNVEKFLDIWVLNEGC-WIRQFKSR 290

Query: 294 PILAVDAPIGFWKNDTFFIRSNTEELLLYDPNSEEIIDFQHK 335
           P+L +  P+  WKN    + S+ ++L+LYD N +E+ D + K
Sbjct: 291 PLLELRNPVAHWKNGNVILDSDNDQLMLYDTNKQELKDLRFK 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224133722|ref|XP_002327664.1| predicted protein [Populus trichocarpa] gi|222836749|gb|EEE75142.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117590|ref|XP_002331674.1| f-box family protein [Populus trichocarpa] gi|222874093|gb|EEF11224.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|117939133|dbj|BAF36715.1| S locus F-box protein with the low allelic sequence polymorphism 3-S4 [Prunus avium] Back     alignment and taxonomy information
>gi|29420813|dbj|BAC66628.1| F-box [Prunus mume] Back     alignment and taxonomy information
>gi|117939139|dbj|BAF36718.1| S locus F-box protein with the low allelic sequence polymorphism 3-Sf [Prunus mume] Back     alignment and taxonomy information
>gi|296090345|emb|CBI40164.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147785389|emb|CAN68677.1| hypothetical protein VITISV_041940 [Vitis vinifera] Back     alignment and taxonomy information
>gi|113129068|gb|ABI30337.1| SLF-like protein 1 [Antirrhinum majus] Back     alignment and taxonomy information
>gi|148923044|gb|ABR18786.1| class S F-box protein [Nicotiana alata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.862 0.793 0.252 4.6e-13
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.943 0.765 0.244 1.2e-10
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.623 0.489 0.279 2e-10
TAIR|locus:2172239379 AT5G62660 "AT5G62660" [Arabido 0.805 0.712 0.244 2.8e-10
TAIR|locus:2119772431 AT4G19930 "AT4G19930" [Arabido 0.826 0.642 0.247 3.8e-10
TAIR|locus:2027397363 AT1G11620 "AT1G11620" [Arabido 0.862 0.796 0.256 2.2e-09
TAIR|locus:2089473410 AT3G21410 "AT3G21410" [Arabido 0.561 0.458 0.278 4.8e-09
TAIR|locus:2119787411 AT4G19940 "AT4G19940" [Arabido 0.823 0.671 0.238 6.4e-09
TAIR|locus:2075790370 AT3G10430 "AT3G10430" [Arabido 0.567 0.513 0.285 6.5e-09
TAIR|locus:2154169420 AT5G62510 "AT5G62510" [Arabido 0.785 0.626 0.247 6.6e-09
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 193 (73.0 bits), Expect = 4.6e-13, P = 4.6e-13
 Identities = 80/317 (25%), Positives = 131/317 (41%)

Query:     1 MVVEILSKFPVKSLLRFRCVCKSWYELFESPSFISKH---LKAGNSNTRLILRYVDSSDD 57
             M+ EIL + PVKSL RF+CVC SW  L     F  KH   L+   + T     Y   +  
Sbjct:    18 MMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGVITTS 77

Query:    58 PEYPRLRYCLFLDPTLANXXXXXXXXXXXXXXXHFR--GPFEGLFIMFIGGDE-IALYNH 114
               Y  L+ C       A+               +++  G   GL    +  D+ + L+N 
Sbjct:    78 -RY-HLKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVCFHVDYDKSLYLWNP 135

Query:   115 ATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVF 174
               +  + L    L +  +    + +G G D   + YK+V ++     +  +V  +++   
Sbjct:   136 TIKLQQRLSSSDL-ETSDDECVVTYGFGYDESEDDYKVVALL----QQRHQVKIETK--- 187

Query:   175 IYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSD 234
             IYS     WR+   F  G+   D+     Y NG  +W     +       + I+S+DMS 
Sbjct:   188 IYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSSS-----SSWTIISYDMSR 242

Query:   235 EVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDERESCFDIWTMKER---YHWTKEFS 291
             + F+E+ GP C        T+ G     LS + + +  +  D+W MKE    Y W+K  S
Sbjct:   243 DEFKELPGPVCCGRGCFTMTL-GDLRGCLSMVCYCKGANA-DVWVMKEFGEVYSWSKLLS 300

Query:   292 TTPILAVDAPIGFWKND 308
                +     P+  W +D
Sbjct:   301 IPGLTDFVRPL--WISD 315
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005634 "nucleus" evidence=IDA
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172239 AT5G62660 "AT5G62660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119772 AT4G19930 "AT4G19930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027397 AT1G11620 "AT1G11620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089473 AT3G21410 "AT3G21410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119787 AT4G19940 "AT4G19940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075790 AT3G10430 "AT3G10430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154169 AT5G62510 "AT5G62510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00120932
hypothetical protein (367 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 7e-09
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 9e-06
pfam0064648 pfam00646, F-box, F-box domain 2e-05
pfam1293747 pfam12937, F-box-like, F-box-like 4e-04
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 46/205 (22%), Positives = 76/205 (37%), Gaps = 27/205 (13%)

Query: 94  GPFEGLFIMFIGGDEIALYNHATRDLKFLPKLTLIDNLESIYTI--MFGLGLDPKCNYYK 151
            P +GL I F  G  + ++N +T   ++LP                 + LG DP    YK
Sbjct: 2   VPCDGL-ICFSYGKRLVVWNPSTGQSRWLPT----PKSRRSNKESDTYFLGYDPIEKQYK 56

Query: 152 LVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNFQGF-EFGMYDLDEVLDCTYHNGACH 210
           ++               +  +  +Y+   NSWR  +            V      NG  +
Sbjct: 57  VLCFSDR------SGNRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGV----CINGVLY 106

Query: 211 WLVPFGAFHPLCCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGL--YNDSLSFLVF 268
           +L      +P      I+SFD+S E F+E +   C    S       L  Y   L+ L  
Sbjct: 107 YLAYTLKTNPDYF---IVSFDVSSERFKEFIPLPCG--NSDSVDYLSLINYKGKLAVLKQ 161

Query: 269 DERESCFDIWTMK--ERYHWTKEFS 291
            +  + FD+W +    +  W+K F+
Sbjct: 162 KKDTNNFDLWVLNDAGKQEWSKLFT 186

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 335
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.67
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.63
PHA02713557 hypothetical protein; Provisional 99.42
PHA02713557 hypothetical protein; Provisional 99.32
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.31
PHA02790480 Kelch-like protein; Provisional 99.27
PHA03098534 kelch-like protein; Provisional 99.27
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.23
PLN02153341 epithiospecifier protein 99.11
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 99.07
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 99.05
PLN02193470 nitrile-specifier protein 99.04
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.03
PHA03098534 kelch-like protein; Provisional 98.93
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.89
PHA02790480 Kelch-like protein; Provisional 98.88
PLN02153 341 epithiospecifier protein 98.75
PLN02193 470 nitrile-specifier protein 98.67
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.62
TIGR03548 323 mutarot_permut cyclically-permuted mutatrotase fam 98.55
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.5
KOG1230 521 consensus Protein containing repeated kelch motifs 98.49
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.3
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.27
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.19
KOG4693392 consensus Uncharacterized conserved protein, conta 97.62
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 97.03
KOG4693 392 consensus Uncharacterized conserved protein, conta 96.99
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.77
smart00284255 OLF Olfactomedin-like domains. 96.58
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 96.5
KOG1230 521 consensus Protein containing repeated kelch motifs 95.95
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 95.44
PF1396450 Kelch_6: Kelch motif 95.17
KOG0281499 consensus Beta-TrCP (transducin repeats containing 94.44
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 94.35
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 94.27
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 94.13
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 93.94
COG3055 381 Uncharacterized protein conserved in bacteria [Fun 93.22
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 93.12
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 93.06
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 92.83
PF1396450 Kelch_6: Kelch motif 92.55
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 92.05
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 91.49
smart0061247 Kelch Kelch domain. 90.9
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 90.22
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 89.85
KOG2055 514 consensus WD40 repeat protein [General function pr 89.29
KOG3545249 consensus Olfactomedin and related extracellular m 89.11
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 89.09
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 88.76
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 88.31
PRK11138 394 outer membrane biogenesis protein BamB; Provisiona 87.75
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 87.54
KOG2997366 consensus F-box protein FBX9 [General function pre 87.23
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 86.32
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 85.11
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 85.04
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 84.85
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 84.23
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 82.69
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 81.32
PRK11028 330 6-phosphogluconolactonase; Provisional 81.21
PF08450 246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 80.84
PRK11028330 6-phosphogluconolactonase; Provisional 80.75
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=2.1e-35  Score=254.06  Aligned_cols=218  Identities=22%  Similarity=0.334  Sum_probs=164.0

Q ss_pred             cccccceEEEeecCceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCce
Q 045559           93 RGPFEGLFIMFIGGDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQ  172 (335)
Q Consensus        93 ~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~  172 (335)
                      ++|||||||+.. ...++||||+||+++.||+++.. ... .....++||||+.+++||||++.....      ......
T Consensus         1 ~~sCnGLlc~~~-~~~~~V~NP~T~~~~~LP~~~~~-~~~-~~~~~~~~G~d~~~~~YKVv~~~~~~~------~~~~~~   71 (230)
T TIGR01640         1 VVPCDGLICFSY-GKRLVVWNPSTGQSRWLPTPKSR-RSN-KESDTYFLGYDPIEKQYKVLCFSDRSG------NRNQSE   71 (230)
T ss_pred             CcccceEEEEec-CCcEEEECCCCCCEEecCCCCCc-ccc-cccceEEEeecccCCcEEEEEEEeecC------CCCCcc
Confidence            479999999887 48899999999999999977643 000 111268999999999999999975311      124578


Q ss_pred             EEEEEcCCCcceecCcccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceee-ecCCCccccCCC
Q 045559          173 VFIYSFSDNSWRNFQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEE-ILGPNCLLEISP  251 (335)
Q Consensus       173 ~~vyss~~~~W~~~~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~-i~~P~~~~~~~~  251 (335)
                      ++||++++++||.++..+.......   .+|++||++||++......   ....|++||+++|+|++ +++|...... .
T Consensus        72 ~~Vys~~~~~Wr~~~~~~~~~~~~~---~~v~~~G~lyw~~~~~~~~---~~~~IvsFDl~~E~f~~~i~~P~~~~~~-~  144 (230)
T TIGR01640        72 HQVYTLGSNSWRTIECSPPHHPLKS---RGVCINGVLYYLAYTLKTN---PDYFIVSFDVSSERFKEFIPLPCGNSDS-V  144 (230)
T ss_pred             EEEEEeCCCCccccccCCCCccccC---CeEEECCEEEEEEEECCCC---CcEEEEEEEcccceEeeeeecCcccccc-c
Confidence            9999999999999874322222221   3999999999999754311   02389999999999995 8888754321 1


Q ss_pred             CeeEEEEeCCeEEEEEecCCCCEEEEEEECC--CCceeEEEEeccC---Cce---eeeEEEeeCCEEEEEecC--Ce-EE
Q 045559          252 KHTVFGLYNDSLSFLVFDERESCFDIWTMKE--RYHWTKEFSTTPI---LAV---DAPIGFWKNDTFFIRSNT--EE-LL  320 (335)
Q Consensus       252 ~~~~l~~~~g~L~~~~~~~~~~~~~IW~l~~--~~~W~~~~~i~~~---~~~---~~~~~~~~~~~il~~~~~--~~-l~  320 (335)
                      ....|++++|+||++........++||+|++  ..+|+++++| +.   ..+   ..|.++.++|+|++...+  .. ++
T Consensus       145 ~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i-~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~  223 (230)
T TIGR01640       145 DYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTV-PIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIF  223 (230)
T ss_pred             cceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEE-cCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEE
Confidence            3468999999999999875345699999997  5679999999 53   222   458899999999887663  34 99


Q ss_pred             EEeCCCC
Q 045559          321 LYDPNSE  327 (335)
Q Consensus       321 ~yd~~~~  327 (335)
                      +||+++|
T Consensus       224 ~y~~~~~  230 (230)
T TIGR01640       224 YYNVGEN  230 (230)
T ss_pred             EEeccCC
Confidence            9999986

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 9e-04
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
 Score = 36.0 bits (84), Expect = 9e-04
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 2  VVEILSKFPVKSLLRFRCVCKSWYELFESPSF 33
          ++ I S   +  LL+   VCK WY L    S 
Sbjct: 17 LLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.44
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.42
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.41
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.4
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.39
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.39
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.32
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.32
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.32
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.32
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.31
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.24
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.18
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.99
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.93
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 98.68
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.58
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.52
2zwa_A 695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.39
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.37
3v7d_B 464 Cell division control protein 4; WD 40 domain, pho 98.35
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.33
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.16
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.14
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 95.55
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 95.43
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 95.2
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 95.18
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 94.37
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 94.3
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 94.11
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 94.03
2iwa_A 266 Glutamine cyclotransferase; pyroglutamate, acyltra 94.02
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 93.75
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 93.5
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 93.1
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 92.8
3dsm_A 328 Uncharacterized protein bacuni_02894; seven_blated 92.75
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 92.72
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 92.67
3jro_A 753 Fusion protein of protein transport protein SEC13 92.64
3jrp_A 379 Fusion protein of protein transport protein SEC13 92.59
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 92.42
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 92.38
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 92.18
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 92.17
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 91.45
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 91.44
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 91.31
4gga_A 420 P55CDC, cell division cycle protein 20 homolog; ce 91.26
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 91.08
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 90.65
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 89.91
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 89.75
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 89.48
3u4y_A 331 Uncharacterized protein; structural genomics, PSI- 88.88
1ri6_A 343 Putative isomerase YBHE; 7-bladed propeller, enzym 88.65
1nir_A 543 Nitrite reductase; hemoprotein, denitrification, d 88.27
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 87.94
3v65_B386 Low-density lipoprotein receptor-related protein; 87.45
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 87.08
3v64_C 349 Agrin; beta propeller, laminin-G, signaling, prote 85.74
1qks_A 567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 85.38
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 85.28
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 85.1
2dg1_A 333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 84.98
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 84.47
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 84.39
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 83.9
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 83.75
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 83.52
3pe7_A388 Oligogalacturonate lyase; seven-bladed beta-propel 82.77
3v65_B386 Low-density lipoprotein receptor-related protein; 82.57
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 82.43
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 82.06
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 81.87
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 81.85
3hrp_A 409 Uncharacterized protein; NP_812590.1, structural g 81.47
4e54_B435 DNA damage-binding protein 2; beta barrel, double 80.47
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 80.1
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 80.06
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
Probab=99.44  E-value=5.8e-12  Score=112.04  Aligned_cols=198  Identities=11%  Similarity=0.059  Sum_probs=131.2

Q ss_pred             eEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCcceecC
Q 045559          108 EIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRNFQ  187 (335)
Q Consensus       108 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~~~  187 (335)
                      .++++||.|++|..+|+++..     ..  ..+....  .+  +++.+.......   .......+++|+..+++|+.++
T Consensus        68 ~~~~~d~~~~~W~~~~~~p~~-----r~--~~~~~~~--~~--~lyv~GG~~~~~---~~~~~~~~~~~d~~~~~W~~~~  133 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPPLPSP-----RC--LFGLGEA--LN--SIYVVGGREIKD---GERCLDSVMCYDRLSFKWGESD  133 (315)
T ss_dssp             EEEEEETTTTEEEECCCBSSC-----EE--SCEEEEE--TT--EEEEECCEESST---TCCBCCCEEEEETTTTEEEECC
T ss_pred             ceEEecCCCCeEEECCCCCcc-----hh--ceeEEEE--CC--EEEEEeCCcCCC---CCcccceEEEECCCCCcEeECC
Confidence            388999999999999887755     11  1111111  12  333332211100   0233567999999999999998


Q ss_pred             cccccccccCCCceeeeecceEEEEeecCCCCCccCceEEEEEECCccceeee-cCCCccccCCCCeeEEEEeCCeEEEE
Q 045559          188 GFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHPLCCHYVILSFDMSDEVFEEI-LGPNCLLEISPKHTVFGLYNDSLSFL  266 (335)
Q Consensus       188 ~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~g~L~~~  266 (335)
                      .+|.+...+    ..+.++|.+|.+.......  .....+..||+.+++|+.+ ++|...     .....+..+|+|+++
T Consensus       134 ~~p~~r~~~----~~~~~~~~iyv~GG~~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~~~~~~~~~iyv~  202 (315)
T 4asc_A          134 PLPYVVYGH----TVLSHMDLVYVIGGKGSDR--KCLNKMCVYDPKKFEWKELAPMQTAR-----SLFGATVHDGRIIVA  202 (315)
T ss_dssp             CCSSCCBSC----EEEEETTEEEEECCBCTTS--CBCCCEEEEETTTTEEEECCCCSSCC-----BSCEEEEETTEEEEE
T ss_pred             CCCCcccce----eEEEECCEEEEEeCCCCCC--cccceEEEEeCCCCeEEECCCCCCch-----hceEEEEECCEEEEE
Confidence            776665544    3788999999998762211  0134799999999999998 555533     344577889999999


Q ss_pred             EecCCC-CEEEEEEECC-CCceeEEEEeccCCceeeeEEEeeCCEEEEEecC---------------CeEEEEeCCCCce
Q 045559          267 VFDERE-SCFDIWTMKE-RYHWTKEFSTTPILAVDAPIGFWKNDTFFIRSNT---------------EELLLYDPNSEEI  329 (335)
Q Consensus       267 ~~~~~~-~~~~IW~l~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~---------------~~l~~yd~~~~~~  329 (335)
                      +..... ..-++|+++. ...|..+..+ |.+.......+ -+++|++..+.               ..+..||+++++|
T Consensus       203 GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  280 (315)
T 4asc_A          203 AGVTDTGLTSSAEVYSITDNKWAPFEAF-PQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW  280 (315)
T ss_dssp             EEECSSSEEEEEEEEETTTTEEEEECCC-SSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred             eccCCCCccceEEEEECCCCeEEECCCC-CCcccceeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence            886422 2446788877 6899987655 54433333332 36787765431               3489999999999


Q ss_pred             eec
Q 045559          330 IDF  332 (335)
Q Consensus       330 ~~v  332 (335)
                      +++
T Consensus       281 ~~~  283 (315)
T 4asc_A          281 EGV  283 (315)
T ss_dssp             EEE
T ss_pred             hhh
Confidence            986
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 335
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 8e-07
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 6e-04
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (102), Expect = 8e-07
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 1  MVVEILSKFPVKSLLRFRCVCKSWYELFESPSF 33
          +++ I S   +  LL+   VCK WY L    S 
Sbjct: 8  LLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 99.07
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 98.83
d1zgka1 288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.35
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 98.23
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 98.14
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.11
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.03
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.01
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 93.57
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 92.63
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 92.02
d1qfma1430 Prolyl oligopeptidase, N-terminal domain {Pig (Sus 88.72
d1qksa2 432 C-terminal (heme d1) domain of cytochrome cd1-nitr 86.97
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 84.48
d2dg1a1 319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 83.67
d2p4oa1 302 Hypothetical protein All0351 homologue {Nostoc pun 83.61
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.9e-09  Score=91.82  Aligned_cols=205  Identities=9%  Similarity=-0.010  Sum_probs=115.8

Q ss_pred             CceEEEEecchhhhhcCCCCcccCCcCCceeeeeEEeecCCCCCeEEEEEEEEecCccccccCCCceEEEEEcCCCccee
Q 045559          106 GDEIALYNHATRDLKFLPKLTLIDNLESIYTIMFGLGLDPKCNYYKLVYIVTYHDSELGKVLNDSRQVFIYSFSDNSWRN  185 (335)
Q Consensus       106 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~l~~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~vyss~~~~W~~  185 (335)
                      -..+.++||.|++|.++|.++..+    ..   ......  .+.-.|+........    +......+++|+..++.|+.
T Consensus        18 ~~~~~~yd~~t~~W~~~~~~p~~R----~~---~~~~~~--~~~iyv~GG~~~~~~----~~~~~~~~~~yd~~~~~w~~   84 (288)
T d1zgka1          18 LSYLEAYNPSNGTWLRLADLQVPR----SG---LAGCVV--GGLLYAVGGRNNSPD----GNTDSSALDCYNPMTNQWSP   84 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCC----BS---CEEEEE--TTEEEEECCEEEETT----EEEECCCEEEEETTTTEEEE
T ss_pred             CceEEEEECCCCeEEECCCCCCcc----ce---eEEEEE--CCEEEEEeCcccCCC----Cccccchhhhcccccccccc
Confidence            346789999999999998876651    11   111111  122222222211111    01234578999999999999


Q ss_pred             cCcccccccccCCCceeeeecceEEEEeecCCCCC--------------------------------------------c
Q 045559          186 FQGFEFGMYDLDEVLDCTYHNGACHWLVPFGAFHP--------------------------------------------L  221 (335)
Q Consensus       186 ~~~~p~~~~~~~~~~~~v~~~G~~ywl~~~~~~~~--------------------------------------------~  221 (335)
                      ++.+|.+...+    .++.++|.+|.+........                                            .
T Consensus        85 ~~~~p~~r~~~----~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~  160 (288)
T d1zgka1          85 CAPMSVPRNRI----GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT  160 (288)
T ss_dssp             CCCCSSCCBTC----EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             cccccceecce----eccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccc
Confidence            98777665444    37888999998754321100                                            0


Q ss_pred             cCceEEEEEECCccceeeecCCCccccCCCCeeEEEEeCCeEEEEEecC-CCCEEEEEEECC-CCceeEEEEeccCCcee
Q 045559          222 CCHYVILSFDMSDEVFEEILGPNCLLEISPKHTVFGLYNDSLSFLVFDE-RESCFDIWTMKE-RYHWTKEFSTTPILAVD  299 (335)
Q Consensus       222 ~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~l~~~~g~L~~~~~~~-~~~~~~IW~l~~-~~~W~~~~~i~~~~~~~  299 (335)
                      .....+..||+.+++|.....++...    .....+..++.+.++.... ....-..|..+. ...|.....+ |.+...
T Consensus       161 ~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~r~~  235 (288)
T d1zgka1         161 NRLNSAECYYPERNEWRMITAMNTIR----SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM-KHRRSA  235 (288)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC-SSCCBS
T ss_pred             cccceEEEeecccccccccccccccc----ccccccceeeeEEEecCccccccccceeeeeecceeeecccCc-cCcccc
Confidence            00112344455555554442222211    2345677788888887653 122234455554 5777765444 443332


Q ss_pred             eeEEEeeCCEEEEEec------CCeEEEEeCCCCceeecc
Q 045559          300 APIGFWKNDTFFIRSN------TEELLLYDPNSEEIIDFQ  333 (335)
Q Consensus       300 ~~~~~~~~~~il~~~~------~~~l~~yd~~~~~~~~v~  333 (335)
                      .-++ .-+++|++..+      ...+..||+++++|+++.
T Consensus       236 ~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  274 (288)
T d1zgka1         236 LGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVT  274 (288)
T ss_dssp             CEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE
T ss_pred             eEEE-EECCEEEEEecCCCCeecceEEEEECCCCEEEECC
Confidence            2223 34788888643      245899999999999874
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure