Citrus Sinensis ID: 045564

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MSNCLDSSSTALLPFKVTVQYKLRTCTFQQRKLGAATDTHREAQISNAKRGGRTALLSRTVTCLTLGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYFPVIVASVKKWKPVLSSRSEDYYQEQNAVTSLMTATLEQKF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHEEEEEEEcccccHHcHHHHHHHHHHHHHHHHHccccEEEEEEEEEEcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHcHcccEEEEcccccccccccccccEEccccccccccccccHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHccccHHcccccccccccc
Coil and Loop (DISEMBL)
msncldssstallpfkVTVQYKLRTCTFqqrklgaatdtHREAQIsnakrggrtALLSRTVTCLTLGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTIlldstatfdslrpqrcdiglslckapskVQFAVLYSGIALACLGLGGLRFTLATmganqfeipqhqgiffNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYFPVIVASVKKWKPVLSSRSEDYYQEQNAVTSLMTATLEQKF
Flexible Loop (DISEMBL)
msncldssstallpfkVTVQYKLRTCTFQqrklgaatdthreaqisnakrggrtallSRTVTCLTLGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYFPVIVASVKKWKPVLSSRSEDYYQEQNAVTSLMTATLEQKF
Low Complexity Region (SEG)
MSNCLDSSSTALLPFKVTVQYKLRTCTFQQRKLGAATDTHREAQISNAKRGGRTALLSRTVTCLTLGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSgialaclglgglRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYFPVIVASVKKWKPVLSSRSEDYYQEQNAVTSLMTATLEQKF
Disordered region (IsUnstruct)
**********ALLPFKVTVQYKLRTCTFQQRKLGAA***************GRTALLSRTVTCLTLGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYFPVIVASVKKWKPVLS*************************
Disordered Region (DISOPRED)
***************************************************GRTALLSRTVTCLTLGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQR************KVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYFPVIVASVKKWKPVLSSRSED*************AT***KF
Disordered Region (DISEMBL)
********STALLPFKVTVQYKLRTCTFQQRK****************KRGGRTALLSRTVTCLTLGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYFPVIVASVKKWKPVLSSRSEDYYQEQNAVTSLMTATLEQKF
Disordered Region (DISPRO)
*****DSSSTALLPFKVTVQYKLRTCTFQQRKLGAATDTHREAQISNAKRGGRTALLSRTVTCLTLGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYFPVIVASVKKWKPVLSSRSEDYYQEQNAVT***********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNCLDSSSTALLPFKVTVQYKLRTCTFQQRKLGAATDTHREAQISNAKRGGRTALLSRTVTCLTLGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYFPVIVASVKKWKPVLSSRSEDYYQEQNAVTSLMTATLEQKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q9M1E1	557	Probable nitrate excretio	yes	no	0.817	0.434	0.480	9e-62
Q9M175	558	Probable nitrate excretio	no	no	0.807	0.428	0.461	6e-58
Q9M1E2	558	Nitrate excretion transpo	no	no	0.820	0.435	0.457	1e-57
Q9M174	516	Putative nitrate excretio	no	no	0.787	0.451	0.457	1e-56
Q9M173	548	Probable nitrate excretio	no	no	0.834	0.450	0.437	6e-56
Q9M172	560	Probable nitrate excretio	no	no	0.834	0.441	0.446	6e-56
Q9M171	555	Putative nitrate excretio	no	no	0.834	0.445	0.443	2e-55
Q8RX77	620	Nitrate transporter 1.7 O	no	no	0.790	0.377	0.328	4e-29
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.706	0.356	0.318	7e-25
Q8VZR7	583	Probable peptide/nitrate	no	no	0.621	0.315	0.343	2e-22

>sp|Q9M1E1|PTR38_ARATH Probable nitrate excretion transporter 2 OS=Arabidopsis thaliana GN=At3g45660 PE=2 SV=1

 Score =  237 bits (604), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 124/258 (48%), Positives = 165/258 (63%), Gaps = 16/258 (6%)

Query: 41  REAQISNAKRGGRTALLSRTVTC--LTLGE-GWVANLMVYMIQEFHITSINSALISNIVN 97
           + A  S  + GGR       VT   LTL   GW+ NL+VY+I+E+++ SI +A I NI +
Sbjct: 13  KSADSSTRRSGGRITFPFMIVTLFGLTLATLGWLQNLIVYLIEEYNMKSIAAAKILNIFS 72

Query: 98  GFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCK 157
           GF  +FP +GAI ADSF G+  VI +SSFISL+G +LL  T  FDSLRPQ C+    LC+
Sbjct: 73  GFTFMFPAIGAIAADSFFGTIPVILVSSFISLVGVVLLALTTLFDSLRPQACETASKLCQ 132

Query: 158 APSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVIS 217
           AP+ +Q  VLY+ I L C+G GGLRFTLAT GANQ+E  + QG FFNWFF   Y +  IS
Sbjct: 133 APTNIQLGVLYTAITLGCVGAGGLRFTLATAGANQYEKTKDQGSFFNWFFFTWYLAASIS 192

Query: 218 SAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------------FPVIVASVK 264
           + A VY E+N+SW  G GL +AANL G+++F+SGK FY               VI A+++
Sbjct: 193 ATAIVYAEENISWSFGFGLCVAANLLGLIVFISGKKFYKHDKPLGSPFTSLLRVIFAAIR 252

Query: 265 KWKPVLSSRSEDYYQEQN 282
           K K V+S+  +DY+ E  
Sbjct: 253 KRKAVVSTNEKDYHSESK 270

Transporter involved in a passive nitrate efflux.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M175|PTR39_ARATH Probable nitrate excretion transporter 3 OS=Arabidopsis thaliana GN=At3g45680 PE=2 SV=1

 Score =  224 bits (571), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 119/258 (46%), Positives = 161/258 (62%), Gaps = 19/258 (7%)

Query: 41  REAQISN---AKRGGRTALLSRTVTCLTLGE---GWVANLMVYMIQEFHITSINSALISN 94
           +EAQIS    +KRGG         T L L     GWV NL+V++I+EF+I SI +A ISN
Sbjct: 9   KEAQISGDPGSKRGGWITFPFMLATLLGLSVTSFGWVMNLIVFLIEEFNIKSIAAAQISN 68

Query: 95  IVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLS 154
           + NG +++ PV+ AI+ADSF G+  VI  SSFISLLG +LL   A+ D LRP+ C+ G  
Sbjct: 69  VANGCLSMLPVVAAILADSFFGNIPVIAASSFISLLGIVLLTLIASLDYLRPRPCEAGSV 128

Query: 155 LCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYAST 214
           LC  PSK+   +LY+ +AL   G GG RFT+A+ GANQ+E P+ QG FFNW+F+  YA  
Sbjct: 129 LCTPPSKLHLGILYTALALVTTGAGGTRFTMASAGANQYEKPKEQGSFFNWYFLTLYAGA 188

Query: 215 VISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------------FPVIVA 261
           +  + A VYI+DN SW+LG GL  AANL   ++F+SGK +Y               V+V+
Sbjct: 189 ITGATAIVYIQDNASWKLGFGLCAAANLISFIVFVSGKRYYKHDKPMGSPFTSLIRVVVS 248

Query: 262 SVKKWKPVLSSRSEDYYQ 279
           +  K K V+S   EDY+ 
Sbjct: 249 ATVKRKAVISCNEEDYHH 266

Transporter involved in a passive nitrate efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1E2|PTR37_ARATH Nitrate excretion transporter 1 OS=Arabidopsis thaliana GN=NAXT1 PE=1 SV=1

 Score =  223 bits (568), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 119/260 (45%), Positives = 166/260 (63%), Gaps = 17/260 (6%)

Query: 38  DTHREAQISNAKRGG---RTALLSRTVTCLTLGE-GWVANLMVYMIQEFHITSINSALIS 93
           +T   A  S  +RGG       +  T+  LT+   GW+ NL+VY+I+EF++ SI +A I+
Sbjct: 10  ETAISADSSTKRRGGGWITFPFMIATLLGLTIAAWGWLLNLIVYLIEEFNVKSIAAAQIA 69

Query: 94  NIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGL 153
           NIV+G + + P + AI +DSF G+  VI +S+FISL+G  LL  TA+ D+LRP+ C+   
Sbjct: 70  NIVSGCICMVPAVAAIASDSFFGTIPVISVSAFISLMGVALLTLTASLDTLRPRPCETAS 129

Query: 154 SLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYAS 213
            LC++PSK Q  VLY+ I LA +G GG RFTLAT GANQ+E  + QG FFNWFF  TY +
Sbjct: 130 ILCQSPSKTQLGVLYTAITLASIGTGGTRFTLATAGANQYEKTKDQGSFFNWFFFTTYLA 189

Query: 214 TVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------------FPVIV 260
             IS+ A VY EDN+SW LG GL++AAN    ++F+SGK FY               VI 
Sbjct: 190 GAISATAIVYTEDNISWTLGFGLSVAANFFSFLVFVSGKRFYKHDKPLGSPFTSLLCVIF 249

Query: 261 ASVKKWKPVLSSRSEDYYQE 280
           A+++K K V+S+  +DY+ E
Sbjct: 250 AALRKRKAVVSTNEKDYHNE 269

Transporter involved in a passive nitrate efflux. Not competent for chloride transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M174|PTR40_ARATH Putative nitrate excretion transporter 4 OS=Arabidopsis thaliana GN=At3g45690 PE=5 SV=1

 Score =  219 bits (559), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/249 (45%), Positives = 156/249 (62%), Gaps = 16/249 (6%)

Query: 47  NAKRGGRTALLSRTVTCLTLGE---GWVANLMVYMIQEFHITSINSALISNIVNGFVNLF 103
           ++KRGG         T L L     GWV NL+V++I+EF+I SI +   SNIVNG V++ 
Sbjct: 16  SSKRGGWKTFPFMIATLLGLSIASFGWVMNLVVFLIKEFNIKSIAATQNSNIVNGCVSML 75

Query: 104 PVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQ 163
           PV+ AI+ADSF G+  VI +S+FISLLG ILL    + D LRP  C+ G  LC++PSK+Q
Sbjct: 76  PVVAAILADSFFGNIPVISVSAFISLLGIILLTMITSLDHLRPPPCETGSILCESPSKLQ 135

Query: 164 FAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVY 223
             +LY  +AL  +G  G RFTLA+ GANQ+E P+ QG FFNW+F+  Y   +  + A VY
Sbjct: 136 LGILYIALALVIIGSAGTRFTLASAGANQYEKPKEQGSFFNWYFLTLYTGAITGATAIVY 195

Query: 224 IEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------------FPVIVASVKKWKPVL 270
            ++N SW+LG GL   ANL   ++F+SGK +Y               V+VA+ +K K V+
Sbjct: 196 TQENASWKLGFGLCAVANLISFIVFVSGKRYYKHDKPMGSPFTNLIRVVVAATRKRKAVI 255

Query: 271 SSRSEDYYQ 279
           SSR EDY+ 
Sbjct: 256 SSREEDYHH 264

Transporter involved in a passive nitrate efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M173|PTR41_ARATH Probable nitrate excretion transporter 5 OS=Arabidopsis thaliana GN=At3g45700 PE=2 SV=1

 Score =  218 bits (554), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 115/263 (43%), Positives = 160/263 (60%), Gaps = 16/263 (6%)

Query: 35  AATDTHREAQISNAKRGGRTALLSRTVTCLTLGE---GWVANLMVYMIQEFHITSINSAL 91
           A +D+  +    ++K GG   L    VT L +     GWV NL+V++I+EF+I SI +  
Sbjct: 2   ANSDSGDKEAHRSSKHGGWITLPFMLVTLLGMSITYFGWVMNLIVFLIEEFNIKSIAAVQ 61

Query: 92  ISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDI 151
           ISNIVNG VN+ PV+ AI+ADSF G+  VI  S+FISL G  LL   A+ D LRP+ C+ 
Sbjct: 62  ISNIVNGVVNMLPVVAAILADSFFGNIPVISASAFISLTGISLLTLIASLDYLRPRPCET 121

Query: 152 GLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTY 211
           G  LC++PSK+Q  +LY+ +AL   G  G RF LA+ GANQ++ P+ QG FFNW+F   Y
Sbjct: 122 GSILCQSPSKLQLGILYAALALVITGTAGTRFILASAGANQYKKPKEQGRFFNWYFFTLY 181

Query: 212 ASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------------FPV 258
              +  + A VY +DN SW+LG GL +AANL   +IF++GK  Y               V
Sbjct: 182 GGAITGTTAIVYAQDNASWKLGFGLCVAANLISFIIFVAGKRLYEHDQPLGSPYTSLVRV 241

Query: 259 IVASVKKWKPVLSSRSEDYYQEQ 281
           +VA+  K K V+S + EDY+  +
Sbjct: 242 LVAATMKRKAVISYKDEDYHHRE 264

Transporter involved in a passive nitrate efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M172|PTR42_ARATH Probable nitrate excretion transporter 6 OS=Arabidopsis thaliana GN=At3g45710 PE=2 SV=2

 Score =  217 bits (553), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 118/264 (44%), Positives = 159/264 (60%), Gaps = 17/264 (6%)

Query: 32  KLGAATDTHREAQISNAKRGGRTALLSRTVTCLTLGE---GWVANLMVYMIQEFHITSIN 88
           K G     HR +  S  KRGG   L    VT L +     GW  NL+V++I+EFHI +I 
Sbjct: 5   KSGDTEVAHRSSDPSE-KRGGWITLPFMLVTLLGMSITSFGWGMNLIVFLIEEFHIKNIA 63

Query: 89  SALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQR 148
           +A ISN+VNG VN+ PV+ AI+ADSF G+  VI  S+FISL GT LL    + + L P+ 
Sbjct: 64  AAQISNVVNGVVNMLPVVAAILADSFFGNIPVISTSTFISLAGTSLLTLITSLNYLMPRP 123

Query: 149 CDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFI 208
           C+ G  LC++PSK+Q  +LY  +AL  +G  G RFTLA  GANQ++ P+ QG FFNWFF+
Sbjct: 124 CETGSILCQSPSKLQLGILYVALALVIIGSAGTRFTLAAAGANQYKKPKEQGRFFNWFFL 183

Query: 209 LTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY------------- 255
             Y   +  + A VY +DN SW+LG GL   ANL   ++F++G  FY             
Sbjct: 184 ALYIGAITGTTAIVYTQDNASWKLGFGLCAVANLISFIVFIAGVRFYKHDKPLGSPYTSL 243

Query: 256 FPVIVASVKKWKPVLSSRSEDYYQ 279
             V+VA+  K K V+SS+ EDY+Q
Sbjct: 244 IRVLVAATMKRKAVISSKDEDYHQ 267

Transporter involved in a passive nitrate efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M171|PTR43_ARATH Putative nitrate excretion transporter 7 OS=Arabidopsis thaliana GN=At3g45720 PE=2 SV=1

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 117/264 (44%), Positives = 165/264 (62%), Gaps = 17/264 (6%)

Query: 34  GAATDTHREAQIS-NAKRGGRTALLSRTVTCLTLG---EGWVANLMVYMIQEFHITSINS 89
           G       EA+IS + KRGG         T L +     GWV NL+V++I+E++I SI +
Sbjct: 3   GLVLSNDTEAKISGDCKRGGCITFPFMIATLLGISVTSYGWVLNLIVFLIEEYNIKSIAA 62

Query: 90  ALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRC 149
           A ISNIVNG +++ PV+ AI+ADSF G+  VI  S+FISLLG  LL   ++F++LRP+ C
Sbjct: 63  AQISNIVNGCLSMLPVVTAILADSFFGNIPVISASAFISLLGIFLLTLISSFENLRPRPC 122

Query: 150 DIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFIL 209
           + G  LC++PSK+   VLY+ +AL   G  G R  LA+ GANQ++ P+ +G FFNW+F+ 
Sbjct: 123 ETGSILCQSPSKLHLGVLYAALALVTAGTSGTRVALASAGANQYDKPRDKGSFFNWYFLT 182

Query: 210 TYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------------F 256
                +IS+ A VY ++N SWRLG GL  AANL   ++F+SGK FY              
Sbjct: 183 VNTGAIISATAIVYTQENASWRLGFGLCAAANLISFIVFISGKRFYKHDKPMGSPFTSLI 242

Query: 257 PVIVASVKKWKPVLSSRSEDYYQE 280
            V+VA++ K K V SS+ EDY++E
Sbjct: 243 RVLVAAILKIKVVTSSKEEDYHRE 266

Transporter involved in a passive nitrate efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1

 Score =  128 bits (322), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 132/256 (51%), Gaps = 22/256 (8%)

Query: 42  EAQISNAKRGGRTAL--LSRTVTCLTLGE-GWVANLMVYMIQEFHITSINSALISNIVNG 98
           +A+    K GG  A+  +    T   LG  G +AN MVY+ + FH+  +++A + NI +G
Sbjct: 44  DAEKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSG 103

Query: 99  FVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSL-CK 157
           F NL P++GA I+D+++G F+ I  +SF +LLG I +  TA+F  L P  C+    L C 
Sbjct: 104 FTNLTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCG 163

Query: 158 APSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGI-----FFNWFFILTYA 212
            P+K+Q  VL  G+    +G GG+R      G +QF+    +G+     FFNW+++    
Sbjct: 164 GPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVASFFNWYYMTFTV 223

Query: 213 STVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYF-------------PVI 259
             +I+    VYI+D +SW +G  +        VV+F +G   Y               VI
Sbjct: 224 VLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQVI 283

Query: 260 VASVKKWKPVLSSRSE 275
           VA+ KK K  L +  +
Sbjct: 284 VAARKKRKLKLPAEDD 299

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  114 bits (286), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 23/232 (9%)

Query: 69  GWVANLMVYMIQEFHITSINSALISNIVN--GFVNLFPVLGAIIADSFLGSFQVIWISSF 126
           G  +NL++YM  + H  ++ S+  +N+ N  G   L P+LGA +AD+  G +    ISS 
Sbjct: 50  GISSNLVIYMTTKLHQGTVKSS--NNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSA 107

Query: 127 ISLLGTILLDSTATFDSLRPQRCDIG-LSLCKAPSKVQFAVLYSGIALACLGLGGLRFTL 185
           I LLG  LL  + +   L+P +C    +  C+  S +Q AV +  +    +G GG +  +
Sbjct: 108 IYLLGMALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNI 167

Query: 186 ATMGANQFE--IPQ---HQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAA 240
           +T+GA+QF+   P+   H+  FFNW+    +  T  ++   VY++DN+ W +G GL+   
Sbjct: 168 STIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLG 227

Query: 241 NLAGVVIFLSGKHFY---FP----------VIVASVKKWKPVLSSRSEDYYQ 279
               + IFL G   Y    P          VIVAS++K +  +SS S  +Y+
Sbjct: 228 LAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYE 279

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZR7|PTR30_ARATH Probable peptide/nitrate transporter At2g40460 OS=Arabidopsis thaliana GN=At2g40460 PE=2 SV=2

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 8/192 (4%)

Query: 69  GWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS 128
           G  +NL+ Y+ +  H  +I+S    N  +G V + P+ GA IADS++G F     SS I 
Sbjct: 47  GIASNLVNYLTKRLHEDTISSVRNVNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIY 106

Query: 129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATM 188
           +LG ILL    T  SLRP  C+ G  +C   S +Q    Y  +    +G GG +  ++T 
Sbjct: 107 VLGMILLTMAVTVKSLRPT-CENG--VCNKASSLQVTFFYISLYTIAIGAGGTKPNISTF 163

Query: 189 GANQF-----EIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLA 243
           GA+QF     E  + +  FFNW+   ++   + ++   VYI++NL W LG G+     L 
Sbjct: 164 GADQFDSYSIEEKKQKVSFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLV 223

Query: 244 GVVIFLSGKHFY 255
            +V+F  G  FY
Sbjct: 224 SLVVFYIGTPFY 235

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
297746190	547	unnamed protein product [Vitis vinifera]	0.858	0.464	0.512	1e-65
225435185	577	PREDICTED: nitrate excretion transporter	0.858	0.440	0.512	2e-65
297746189	545	unnamed protein product [Vitis vinifera]	0.858	0.466	0.501	4e-64
225435181	577	PREDICTED: nitrate excretion transporter	0.858	0.440	0.501	4e-64
15231202	557	major facilitator protein [Arabidopsis t	0.817	0.434	0.480	6e-60
255582989	566	Peptide transporter, putative [Ricinus c	0.881	0.461	0.471	7e-58
297815710	558	proton-dependent oligopeptide transport	0.716	0.379	0.506	2e-57
113205242	531	POT family protein [Solanum demissum]	0.722	0.403	0.482	4e-57
15231215	558	major facilitator protein [Arabidopsis t	0.807	0.428	0.461	3e-56
26450397	558	putative transporter protein [Arabidopsi	0.807	0.428	0.461	5e-56

>gi|297746190|emb|CBI16246.3| unnamed protein product [Vitis vinifera]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 141/275 (51%), Positives = 185/275 (67%), Gaps = 21/275 (7%)

Query: 41  REAQISNA--KRGGRTALL--SRTVTCLTLGEG-WVANLMVYMIQEFHITSINSALISNI 95
           RE+QIS++   +GG    L  +  +T LTL  G W ANL+VY+I+EF++  I++A ISN+
Sbjct: 21  RESQISDSGSTKGGWITFLFIAGALTGLTLAAGGWGANLIVYLIEEFNVKRIDAAQISNV 80

Query: 96  VNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSL 155
           V+G  +LFP++GAI AD F GSF +I + S ISLLG +LL  T T D LRPQ+C+ G +L
Sbjct: 81  VSGSTSLFPIVGAIAADCFFGSFSIIALCSCISLLGVVLLALT-TLDFLRPQQCEHGSTL 139

Query: 156 CKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTV 215
           CK PSK+QFAVLYSGIALA +GLGG RFTLATMGA+QF+ P+HQG FFNW+F + Y S V
Sbjct: 140 CKNPSKIQFAVLYSGIALAVIGLGGTRFTLATMGADQFDKPKHQGTFFNWYFFVFYVSAV 199

Query: 216 ISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYFP-------------VIVAS 262
           IS+ A VY+EDN+SW  G GL +  NL G+VIFL G  FY               V VA+
Sbjct: 200 ISNTAIVYVEDNVSWTWGFGLTVVCNLIGLVIFLLGSRFYRHVKPQGSPFVDLARVFVAA 259

Query: 263 VKKWKPVLSSRSEDYY--QEQNAVTSLMTATLEQK 295
           ++K K +LS  S+DYY   +      ++T T   K
Sbjct: 260 LRKRKVLLSLNSDDYYYCHKHQGSVKMVTGTTPTK 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435185|ref|XP_002281925.1| PREDICTED: nitrate excretion transporter 1 [Vitis vinifera]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/275 (51%), Positives = 185/275 (67%), Gaps = 21/275 (7%)

Query: 41  REAQISNA--KRGGRTALL--SRTVTCLTLGEG-WVANLMVYMIQEFHITSINSALISNI 95
           RE+QIS++   +GG    L  +  +T LTL  G W ANL+VY+I+EF++  I++A ISN+
Sbjct: 21  RESQISDSGSTKGGWITFLFIAGALTGLTLAAGGWGANLIVYLIEEFNVKRIDAAQISNV 80

Query: 96  VNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSL 155
           V+G  +LFP++GAI AD F GSF +I + S ISLLG +LL  T T D LRPQ+C+ G +L
Sbjct: 81  VSGSTSLFPIVGAIAADCFFGSFSIIALCSCISLLGVVLLALT-TLDFLRPQQCEHGSTL 139

Query: 156 CKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTV 215
           CK PSK+QFAVLYSGIALA +GLGG RFTLATMGA+QF+ P+HQG FFNW+F + Y S V
Sbjct: 140 CKNPSKIQFAVLYSGIALAVIGLGGTRFTLATMGADQFDKPKHQGTFFNWYFFVFYVSAV 199

Query: 216 ISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYFP-------------VIVAS 262
           IS+ A VY+EDN+SW  G GL +  NL G+VIFL G  FY               V VA+
Sbjct: 200 ISNTAIVYVEDNVSWTWGFGLTVVCNLIGLVIFLLGSRFYRHVKPQGSPFVDLARVFVAA 259

Query: 263 VKKWKPVLSSRSEDYY--QEQNAVTSLMTATLEQK 295
           ++K K +LS  S+DYY   +      ++T T   K
Sbjct: 260 LRKRKVLLSLNSDDYYYCHKHQGSVKMVTGTTPTK 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746189|emb|CBI16245.3| unnamed protein product [Vitis vinifera]

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 138/275 (50%), Positives = 183/275 (66%), Gaps = 21/275 (7%)

Query: 41  REAQISNA--KRGGRTALL--SRTVTCLTLGEG-WVANLMVYMIQEFHITSINSALISNI 95
           RE+QIS++   +GG    L  +  +T LTL  G W ANL+VY+I+EF +  I++A ISN+
Sbjct: 21  RESQISDSGSTKGGWITFLFIAGALTGLTLAAGGWGANLIVYLIEEFSVKRIDAAQISNV 80

Query: 96  VNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSL 155
           V+G  +LFP++GAI AD F GSF +I + S ISLLG + L  T T D LRPQ+C+ G +L
Sbjct: 81  VSGSTSLFPIVGAIAADCFFGSFSIIALCSCISLLGVVFLALT-TLDFLRPQQCEHGSTL 139

Query: 156 CKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTV 215
           CK PSK+QFAVLYSGI LA +GLGG RFTLATMGA+QF+ P+HQ  FFNW+F + Y S+V
Sbjct: 140 CKNPSKIQFAVLYSGITLAVIGLGGTRFTLATMGADQFDKPKHQATFFNWYFFVFYVSSV 199

Query: 216 ISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYFP-------------VIVAS 262
           IS+ A VY+EDN+SW  G GL +  NL G+VIFL G  FY               V VA+
Sbjct: 200 ISNTAIVYVEDNVSWTWGFGLTVVCNLIGLVIFLLGSRFYRHVKPQGSPFVDLARVFVAA 259

Query: 263 VKKWKPVLSSRSEDYY--QEQNAVTSLMTATLEQK 295
           ++K K ++S  S+DYY   +      ++TAT   K
Sbjct: 260 LRKRKVLISLNSDDYYYCHKHQGYVKMVTATTPTK 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435181|ref|XP_002281906.1| PREDICTED: nitrate excretion transporter 1 [Vitis vinifera]

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 138/275 (50%), Positives = 183/275 (66%), Gaps = 21/275 (7%)

Query: 41  REAQISNA--KRGGRTALL--SRTVTCLTLGEG-WVANLMVYMIQEFHITSINSALISNI 95
           RE+QIS++   +GG    L  +  +T LTL  G W ANL+VY+I+EF +  I++A ISN+
Sbjct: 21  RESQISDSGSTKGGWITFLFIAGALTGLTLAAGGWGANLIVYLIEEFSVKRIDAAQISNV 80

Query: 96  VNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSL 155
           V+G  +LFP++GAI AD F GSF +I + S ISLLG + L  T T D LRPQ+C+ G +L
Sbjct: 81  VSGSTSLFPIVGAIAADCFFGSFSIIALCSCISLLGVVFLALT-TLDFLRPQQCEHGSTL 139

Query: 156 CKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTV 215
           CK PSK+QFAVLYSGI LA +GLGG RFTLATMGA+QF+ P+HQ  FFNW+F + Y S+V
Sbjct: 140 CKNPSKIQFAVLYSGITLAVIGLGGTRFTLATMGADQFDKPKHQATFFNWYFFVFYVSSV 199

Query: 216 ISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYFP-------------VIVAS 262
           IS+ A VY+EDN+SW  G GL +  NL G+VIFL G  FY               V VA+
Sbjct: 200 ISNTAIVYVEDNVSWTWGFGLTVVCNLIGLVIFLLGSRFYRHVKPQGSPFVDLARVFVAA 259

Query: 263 VKKWKPVLSSRSEDYY--QEQNAVTSLMTATLEQK 295
           ++K K ++S  S+DYY   +      ++TAT   K
Sbjct: 260 LRKRKVLISLNSDDYYYCHKHQGYVKMVTATTPTK 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231202|ref|NP_190152.1| major facilitator protein [Arabidopsis thaliana] gi|75181814|sp|Q9M1E1.1|PTR38_ARATH RecName: Full=Probable nitrate excretion transporter 2; AltName: Full=Protein NAXT1-like 1 gi|6996269|emb|CAB75495.1| putative protein [Arabidopsis thaliana] gi|332644535|gb|AEE78056.1| major facilitator protein [Arabidopsis thaliana]

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 124/258 (48%), Positives = 165/258 (63%), Gaps = 16/258 (6%)

Query: 41  REAQISNAKRGGRTALLSRTVTC--LTLGE-GWVANLMVYMIQEFHITSINSALISNIVN 97
           + A  S  + GGR       VT   LTL   GW+ NL+VY+I+E+++ SI +A I NI +
Sbjct: 13  KSADSSTRRSGGRITFPFMIVTLFGLTLATLGWLQNLIVYLIEEYNMKSIAAAKILNIFS 72

Query: 98  GFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCK 157
           GF  +FP +GAI ADSF G+  VI +SSFISL+G +LL  T  FDSLRPQ C+    LC+
Sbjct: 73  GFTFMFPAIGAIAADSFFGTIPVILVSSFISLVGVVLLALTTLFDSLRPQACETASKLCQ 132

Query: 158 APSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVIS 217
           AP+ +Q  VLY+ I L C+G GGLRFTLAT GANQ+E  + QG FFNWFF   Y +  IS
Sbjct: 133 APTNIQLGVLYTAITLGCVGAGGLRFTLATAGANQYEKTKDQGSFFNWFFFTWYLAASIS 192

Query: 218 SAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------------FPVIVASVK 264
           + A VY E+N+SW  G GL +AANL G+++F+SGK FY               VI A+++
Sbjct: 193 ATAIVYAEENISWSFGFGLCVAANLLGLIVFISGKKFYKHDKPLGSPFTSLLRVIFAAIR 252

Query: 265 KWKPVLSSRSEDYYQEQN 282
           K K V+S+  +DY+ E  
Sbjct: 253 KRKAVVSTNEKDYHSESK 270

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582989|ref|XP_002532264.1| Peptide transporter, putative [Ricinus communis] gi|223528052|gb|EEF30130.1| Peptide transporter, putative [Ricinus communis]

 Score =  230 bits (586), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 131/278 (47%), Positives = 180/278 (64%), Gaps = 17/278 (6%)

Query: 36  ATDTHREAQISNAKRGGR---TALLSRTVTCLTL-GEGWVANLMVYMIQEFHITSINSAL 91
           + D   +   S+AK  G       +  T+  +TL G G++ANL+VY+I+EF+  SI++A 
Sbjct: 6   SADPEAKMPSSSAKERGNWITFPFIIGTMAGVTLAGGGYLANLIVYLIEEFNFKSIDAAQ 65

Query: 92  ISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDI 151
           + N+VNG  NLFP+ GAI+ADSFLG+F V+ ISS +S LG +LL  T+  D L+P+ C+I
Sbjct: 66  VFNVVNGASNLFPIAGAIVADSFLGNFTVVTISSCVSFLGVVLLVLTSLLDFLKPKPCEI 125

Query: 152 GLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTY 211
           G SLC+ P K Q+AVLY  + L  +G GG R++LATMGANQF  P+ Q  +FNWFF   Y
Sbjct: 126 GSSLCQTPLKPQYAVLYGALVLTSIGFGGSRYSLATMGANQFNKPEDQNTYFNWFFFTLY 185

Query: 212 ASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------------FPV 258
           +++VIS  A VY+E+N+SW LG GL + AN   +VIFL GK FY               V
Sbjct: 186 SASVISVTAIVYVEENISWALGFGLCLGANFIALVIFLLGKRFYRCDKPEGSPFTALARV 245

Query: 259 IVASVKKWKPVLSSRSEDYYQEQNAVTSLMTATLEQKF 296
           +VA++KK K +LSSRSEDYY E +A      AT+ + F
Sbjct: 246 VVATIKKRKVLLSSRSEDYYYENDAKAKEAAATVTKSF 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815710|ref|XP_002875738.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297321576|gb|EFH51997.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 114/225 (50%), Positives = 154/225 (68%), Gaps = 13/225 (5%)

Query: 69  GWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS 128
           GW+ NL+VY+I+EF++ SI +A I+NIV+G + + P + AI +DSF G+  VI +S+FIS
Sbjct: 45  GWLLNLIVYLIEEFNVKSIAAAQIANIVSGCICMVPAMAAIASDSFFGTIPVISVSAFIS 104

Query: 129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATM 188
           L+G  LL  TA+ DSLRP+ C+   SLC++PSK Q  VLY+ I LA +G GG RFTLAT 
Sbjct: 105 LMGVALLTLTASLDSLRPRACETASSLCQSPSKTQLGVLYTAITLASIGTGGTRFTLATA 164

Query: 189 GANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIF 248
           GANQ+E  + QG FFNWFF  TY +  IS+ A VY EDN+SW LG GL++AANL   ++F
Sbjct: 165 GANQYEKTKDQGSFFNWFFFTTYLAGAISATAIVYTEDNISWTLGFGLSVAANLFSFLVF 224

Query: 249 LSGKHFY-------------FPVIVASVKKWKPVLSSRSEDYYQE 280
           +SGK FY               VI A+V+K K V+S+  +DY+ E
Sbjct: 225 ISGKRFYKHDKPLGSPFTSLLCVIFAAVRKRKAVVSTNEKDYHNE 269

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113205242|gb|AAT39311.2| POT family protein [Solanum demissum]

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 110/228 (48%), Positives = 151/228 (66%), Gaps = 14/228 (6%)

Query: 69  GWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS 128
           GW +NL+VY+I EF++ SI +A + N++NG   LFP++G I+ADS+LGSF VIW SS IS
Sbjct: 10  GWTSNLIVYLIDEFNMKSIKTAKVYNVINGCTTLFPIVGGILADSYLGSFSVIWFSSLIS 69

Query: 129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATM 188
            LG +LL  T+  D LRP  CD G SLC +PS  Q+AVLY  +ALA LG+ G RF +A M
Sbjct: 70  ALGILLLLFTSAIDVLRPPPCDDGSSLCTSPSTHQYAVLYVALALASLGVAGTRFIIAPM 129

Query: 189 GANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIF 248
           GANQF+ P+HQ IFFNW+    Y S  IS+   VY+EDN+SW  G G+++A N+ G+ +F
Sbjct: 130 GANQFDKPKHQAIFFNWYIFAFYMSFAISTTVIVYVEDNVSWSWGYGISMAFNILGLAMF 189

Query: 249 LSGKHFYFP--------------VIVASVKKWKPVLSSRSEDYYQEQN 282
           L GK FY                VIV +++KW+  LS +++ YY + +
Sbjct: 190 LIGKRFYCDVKEQGGSPFVNLARVIVVAIQKWRVPLSEQTQHYYHDPS 237

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231215|ref|NP_190154.1| major facilitator protein [Arabidopsis thaliana] gi|75311772|sp|Q9M175.1|PTR39_ARATH RecName: Full=Probable nitrate excretion transporter 3; AltName: Full=Protein NAXT1-like 2 gi|7019634|emb|CAB75781.1| putative transporter protein [Arabidopsis thaliana] gi|332644538|gb|AEE78059.1| major facilitator protein [Arabidopsis thaliana]

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 119/258 (46%), Positives = 161/258 (62%), Gaps = 19/258 (7%)

Query: 41  REAQISN---AKRGGRTALLSRTVTCLTLGE---GWVANLMVYMIQEFHITSINSALISN 94
           +EAQIS    +KRGG         T L L     GWV NL+V++I+EF+I SI +A ISN
Sbjct: 9   KEAQISGDPGSKRGGWITFPFMLATLLGLSVTSFGWVMNLIVFLIEEFNIKSIAAAQISN 68

Query: 95  IVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLS 154
           + NG +++ PV+ AI+ADSF G+  VI  SSFISLLG +LL   A+ D LRP+ C+ G  
Sbjct: 69  VANGCLSMLPVVAAILADSFFGNIPVIAASSFISLLGIVLLTLIASLDYLRPRPCEAGSV 128

Query: 155 LCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYAST 214
           LC  PSK+   +LY+ +AL   G GG RFT+A+ GANQ+E P+ QG FFNW+F+  YA  
Sbjct: 129 LCTPPSKLHLGILYTALALVTTGAGGTRFTMASAGANQYEKPKEQGSFFNWYFLTLYAGA 188

Query: 215 VISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------------FPVIVA 261
           +  + A VYI+DN SW+LG GL  AANL   ++F+SGK +Y               V+V+
Sbjct: 189 ITGATAIVYIQDNASWKLGFGLCAAANLISFIVFVSGKRYYKHDKPMGSPFTSLIRVVVS 248

Query: 262 SVKKWKPVLSSRSEDYYQ 279
           +  K K V+S   EDY+ 
Sbjct: 249 ATVKRKAVISCNEEDYHH 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26450397|dbj|BAC42313.1| putative transporter protein [Arabidopsis thaliana]

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 119/258 (46%), Positives = 161/258 (62%), Gaps = 19/258 (7%)

Query: 41  REAQISN---AKRGGRTALLSRTVTCLTLGE---GWVANLMVYMIQEFHITSINSALISN 94
           +EAQIS    +KRGG         T L L     GWV NL+V++I+EF+I SI +A ISN
Sbjct: 9   KEAQISGDPGSKRGGWITFPFMLATLLGLSVTSFGWVMNLIVFLIEEFNIKSIAAAQISN 68

Query: 95  IVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLS 154
           + NG +++ PV+ AI+ADSF G+  VI  SSFISLLG +LL   A+ D LRP+ C+ G  
Sbjct: 69  VANGCLSVLPVVAAILADSFFGNIPVIAASSFISLLGIVLLTLIASLDYLRPRPCEAGSV 128

Query: 155 LCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYAST 214
           LC  PSK+   +LY+ +AL   G GG RFT+A+ GANQ+E P+ QG FFNW+F+  YA  
Sbjct: 129 LCTPPSKLHLGILYTALALVTTGAGGTRFTMASAGANQYEKPKEQGSFFNWYFLTLYAGA 188

Query: 215 VISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------------FPVIVA 261
           +  + A VYI+DN SW+LG GL  AANL   ++F+SGK +Y               V+V+
Sbjct: 189 ITGATAIVYIQDNASWKLGFGLCAAANLISFIVFVSGKRYYKHDKPMGSPFTSLIRVVVS 248

Query: 262 SVKKWKPVLSSRSEDYYQ 279
           +  K K V+S   EDY+ 
Sbjct: 249 ATVKRKAVISCNEEDYHH 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2085662	557	AT3G45660 [Arabidopsis thalian	0.810	0.430	0.460	3e-53
TAIR|locus:2102659	558	AT3G45680 [Arabidopsis thalian	0.804	0.426	0.447	4e-51
TAIR|locus:2085647	558	NAXT1 "nitrate excretion trans	0.820	0.435	0.438	8.3e-51
TAIR|locus:2102669	516	AT3G45690 [Arabidopsis thalian	0.783	0.449	0.447	1.7e-50
TAIR|locus:2102694	555	AT3G45720 [Arabidopsis thalian	0.834	0.445	0.431	3.6e-50
TAIR|locus:2102689	560	AT3G45710 [Arabidopsis thalian	0.834	0.441	0.435	5.8e-50
TAIR|locus:2102679	548	AT3G45700 [Arabidopsis thalian	0.810	0.437	0.439	2.5e-49
TAIR|locus:2196800	620	NRT1.7 "nitrate transporter 1.	0.722	0.345	0.322	1.6e-25
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.706	0.356	0.306	9.2e-23
TAIR|locus:2061843	583	AT2G40460 [Arabidopsis thalian	0.621	0.315	0.328	1.1e-21

TAIR|locus:2085662 AT3G45660 [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 118/256 (46%), Positives = 158/256 (61%)

Query:    41 REAQISNAKRGGRTALLSRTVTC--LTLGE-GWVANLMVYMIQEFHITSINSALISNIVN 97
             + A  S  + GGR       VT   LTL   GW+ NL+VY+I+E+++ SI +A I NI +
Sbjct:    13 KSADSSTRRSGGRITFPFMIVTLFGLTLATLGWLQNLIVYLIEEYNMKSIAAAKILNIFS 72

Query:    98 GFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCK 157
             GF  +FP +GAI ADSF G+  VI +SSFISL+G +LL  T  FDSLRPQ C+    LC+
Sbjct:    73 GFTFMFPAIGAIAADSFFGTIPVILVSSFISLVGVVLLALTTLFDSLRPQACETASKLCQ 132

Query:   158 APSKVQFAVLYSXXXXXXXXXXXXRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVIS 217
             AP+ +Q  VLY+            RFTLAT GANQ+E  + QG FFNWFF   Y +  IS
Sbjct:   133 APTNIQLGVLYTAITLGCVGAGGLRFTLATAGANQYEKTKDQGSFFNWFFFTWYLAASIS 192

Query:   218 SAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------FP------VIVASVK 264
             + A VY E+N+SW  G GL +AANL G+++F+SGK FY        P      VI A+++
Sbjct:   193 ATAIVYAEENISWSFGFGLCVAANLLGLIVFISGKKFYKHDKPLGSPFTSLLRVIFAAIR 252

Query:   265 KWKPVLSSRSEDYYQE 280
             K K V+S+  +DY+ E
Sbjct:   253 KRKAVVSTNEKDYHSE 268

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2102659 AT3G45680 [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 115/257 (44%), Positives = 156/257 (60%)

Query:    41 REAQISN---AKRGGRTALLSRTVTCLTLGE---GWVANLMVYMIQEFHITSINSALISN 94
             +EAQIS    +KRGG         T L L     GWV NL+V++I+EF+I SI +A ISN
Sbjct:     9 KEAQISGDPGSKRGGWITFPFMLATLLGLSVTSFGWVMNLIVFLIEEFNIKSIAAAQISN 68

Query:    95 IVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLS 154
             + NG +++ PV+ AI+ADSF G+  VI  SSFISLLG +LL   A+ D LRP+ C+ G  
Sbjct:    69 VANGCLSMLPVVAAILADSFFGNIPVIAASSFISLLGIVLLTLIASLDYLRPRPCEAGSV 128

Query:   155 LCKAPSKVQFAVLYSXXXXXXXXXXXXRFTLATMGANQFEIPQHQGIFFNWFFILTYAST 214
             LC  PSK+   +LY+            RFT+A+ GANQ+E P+ QG FFNW+F+  YA  
Sbjct:   129 LCTPPSKLHLGILYTALALVTTGAGGTRFTMASAGANQYEKPKEQGSFFNWYFLTLYAGA 188

Query:   215 VISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------FP------VIVA 261
             +  + A VYI+DN SW+LG GL  AANL   ++F+SGK +Y        P      V+V+
Sbjct:   189 ITGATAIVYIQDNASWKLGFGLCAAANLISFIVFVSGKRYYKHDKPMGSPFTSLIRVVVS 248

Query:   262 SVKKWKPVLSSRSEDYY 278
             +  K K V+S   EDY+
Sbjct:   249 ATVKRKAVISCNEEDYH 265

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2085647 NAXT1 "nitrate excretion transporter1" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 114/260 (43%), Positives = 160/260 (61%)

Query:    38 DTHREAQISNAKRGG---RTALLSRTVTCLTLGE-GWVANLMVYMIQEFHITSINSALIS 93
             +T   A  S  +RGG       +  T+  LT+   GW+ NL+VY+I+EF++ SI +A I+
Sbjct:    10 ETAISADSSTKRRGGGWITFPFMIATLLGLTIAAWGWLLNLIVYLIEEFNVKSIAAAQIA 69

Query:    94 NIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGL 153
             NIV+G + + P + AI +DSF G+  VI +S+FISL+G  LL  TA+ D+LRP+ C+   
Sbjct:    70 NIVSGCICMVPAVAAIASDSFFGTIPVISVSAFISLMGVALLTLTASLDTLRPRPCETAS 129

Query:   154 SLCKAPSKVQFAVLYSXXXXXXXXXXXXRFTLATMGANQFEIPQHQGIFFNWFFILTYAS 213
              LC++PSK Q  VLY+            RFTLAT GANQ+E  + QG FFNWFF  TY +
Sbjct:   130 ILCQSPSKTQLGVLYTAITLASIGTGGTRFTLATAGANQYEKTKDQGSFFNWFFFTTYLA 189

Query:   214 TVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------FP------VIV 260
               IS+ A VY EDN+SW LG GL++AAN    ++F+SGK FY        P      VI 
Sbjct:   190 GAISATAIVYTEDNISWTLGFGLSVAANFFSFLVFVSGKRFYKHDKPLGSPFTSLLCVIF 249

Query:   261 ASVKKWKPVLSSRSEDYYQE 280
             A+++K K V+S+  +DY+ E
Sbjct:   250 AALRKRKAVVSTNEKDYHNE 269

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010447 "response to acidity" evidence=IMP

GO:0010542 "nitrate efflux transmembrane transporter activity" evidence=IMP

GO:0015706 "nitrate transport" evidence=IMP

TAIR|locus:2102669 AT3G45690 [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 111/248 (44%), Positives = 156/248 (62%)

Query:    47 NAKRGG-RT-ALLSRTVTCLTLGE-GWVANLMVYMIQEFHITSINSALISNIVNGFVNLF 103
             ++KRGG +T   +  T+  L++   GWV NL+V++I+EF+I SI +   SNIVNG V++ 
Sbjct:    16 SSKRGGWKTFPFMIATLLGLSIASFGWVMNLVVFLIKEFNIKSIAATQNSNIVNGCVSML 75

Query:   104 PVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQ 163
             PV+ AI+ADSF G+  VI +S+FISLLG ILL    + D LRP  C+ G  LC++PSK+Q
Sbjct:    76 PVVAAILADSFFGNIPVISVSAFISLLGIILLTMITSLDHLRPPPCETGSILCESPSKLQ 135

Query:   164 FAVLYSXXXXXXXXXXXXRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVY 223
               +LY             RFTLA+ GANQ+E P+ QG FFNW+F+  Y   +  + A VY
Sbjct:   136 LGILYIALALVIIGSAGTRFTLASAGANQYEKPKEQGSFFNWYFLTLYTGAITGATAIVY 195

Query:   224 IEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------FP------VIVASVKKWKPVL 270
              ++N SW+LG GL   ANL   ++F+SGK +Y        P      V+VA+ +K K V+
Sbjct:   196 TQENASWKLGFGLCAVANLISFIVFVSGKRYYKHDKPMGSPFTNLIRVVVAATRKRKAVI 255

Query:   271 SSRSEDYY 278
             SSR EDY+
Sbjct:   256 SSREEDYH 263

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2102694 AT3G45720 [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 114/264 (43%), Positives = 161/264 (60%)

Query:    34 GAATDTHREAQIS-NAKRGGRTALLSRTVTCLTLGE---GWVANLMVYMIQEFHITSINS 89
             G       EA+IS + KRGG         T L +     GWV NL+V++I+E++I SI +
Sbjct:     3 GLVLSNDTEAKISGDCKRGGCITFPFMIATLLGISVTSYGWVLNLIVFLIEEYNIKSIAA 62

Query:    90 ALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRC 149
             A ISNIVNG +++ PV+ AI+ADSF G+  VI  S+FISLLG  LL   ++F++LRP+ C
Sbjct:    63 AQISNIVNGCLSMLPVVTAILADSFFGNIPVISASAFISLLGIFLLTLISSFENLRPRPC 122

Query:   150 DIGLSLCKAPSKVQFAVLYSXXXXXXXXXXXXRFTLATMGANQFEIPQHQGIFFNWFFIL 209
             + G  LC++PSK+   VLY+            R  LA+ GANQ++ P+ +G FFNW+F+ 
Sbjct:   123 ETGSILCQSPSKLHLGVLYAALALVTAGTSGTRVALASAGANQYDKPRDKGSFFNWYFLT 182

Query:   210 TYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------FP----- 257
                  +IS+ A VY ++N SWRLG GL  AANL   ++F+SGK FY        P     
Sbjct:   183 VNTGAIISATAIVYTQENASWRLGFGLCAAANLISFIVFISGKRFYKHDKPMGSPFTSLI 242

Query:   258 -VIVASVKKWKPVLSSRSEDYYQE 280
              V+VA++ K K V SS+ EDY++E
Sbjct:   243 RVLVAAILKIKVVTSSKEEDYHRE 266

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2102689 AT3G45710 [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 115/264 (43%), Positives = 154/264 (58%)

Query:    32 KLGAATDTHREAQISNAKRGGRTALLSRTVTCLTLGE---GWVANLMVYMIQEFHITSIN 88
             K G     HR +  S  KRGG   L    VT L +     GW  NL+V++I+EFHI +I 
Sbjct:     5 KSGDTEVAHRSSDPSE-KRGGWITLPFMLVTLLGMSITSFGWGMNLIVFLIEEFHIKNIA 63

Query:    89 SALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQR 148
             +A ISN+VNG VN+ PV+ AI+ADSF G+  VI  S+FISL GT LL    + + L P+ 
Sbjct:    64 AAQISNVVNGVVNMLPVVAAILADSFFGNIPVISTSTFISLAGTSLLTLITSLNYLMPRP 123

Query:   149 CDIGLSLCKAPSKVQFAVLYSXXXXXXXXXXXXRFTLATMGANQFEIPQHQGIFFNWFFI 208
             C+ G  LC++PSK+Q  +LY             RFTLA  GANQ++ P+ QG FFNWFF+
Sbjct:   124 CETGSILCQSPSKLQLGILYVALALVIIGSAGTRFTLAAAGANQYKKPKEQGRFFNWFFL 183

Query:   209 LTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------FP---- 257
               Y   +  + A VY +DN SW+LG GL   ANL   ++F++G  FY        P    
Sbjct:   184 ALYIGAITGTTAIVYTQDNASWKLGFGLCAVANLISFIVFIAGVRFYKHDKPLGSPYTSL 243

Query:   258 --VIVASVKKWKPVLSSRSEDYYQ 279
               V+VA+  K K V+SS+ EDY+Q
Sbjct:   244 IRVLVAATMKRKAVISSKDEDYHQ 267

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2102679 AT3G45700 [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 113/257 (43%), Positives = 154/257 (59%)

Query:    41 REAQISNAKRGGRTALLSRTVTCLTLGE---GWVANLMVYMIQEFHITSINSALISNIVN 97
             +EA  S+ K GG   L    VT L +     GWV NL+V++I+EF+I SI +  ISNIVN
Sbjct:     9 KEAHRSS-KHGGWITLPFMLVTLLGMSITYFGWVMNLIVFLIEEFNIKSIAAVQISNIVN 67

Query:    98 GFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCK 157
             G VN+ PV+ AI+ADSF G+  VI  S+FISL G  LL   A+ D LRP+ C+ G  LC+
Sbjct:    68 GVVNMLPVVAAILADSFFGNIPVISASAFISLTGISLLTLIASLDYLRPRPCETGSILCQ 127

Query:   158 APSKVQFAVLYSXXXXXXXXXXXXRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVIS 217
             +PSK+Q  +LY+            RF LA+ GANQ++ P+ QG FFNW+F   Y   +  
Sbjct:   128 SPSKLQLGILYAALALVITGTAGTRFILASAGANQYKKPKEQGRFFNWYFFTLYGGAITG 187

Query:   218 SAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY-------FP------VIVASVK 264
             + A VY +DN SW+LG GL +AANL   +IF++GK  Y        P      V+VA+  
Sbjct:   188 TTAIVYAQDNASWKLGFGLCVAANLISFIIFVAGKRLYEHDQPLGSPYTSLVRVLVAATM 247

Query:   265 KWKPVLSSRSEDYYQEQ 281
             K K V+S + EDY+  +
Sbjct:   248 KRKAVISYKDEDYHHRE 264

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 1.6e-25, P = 1.6e-25
 Identities = 72/223 (32%), Positives = 114/223 (51%)

Query:    42 EAQISNAKRGGRTAL--LSRTVTCLTLGE-GWVANLMVYMIQEFHITSINSALISNIVNG 98
             +A+    K GG  A+  +    T   LG  G +AN MVY+ + FH+  +++A + NI +G
Sbjct:    44 DAEKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSG 103

Query:    99 FVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSL-CK 157
             F NL P++GA I+D+++G F+ I  +SF +LLG I +  TA+F  L P  C+    L C 
Sbjct:   104 FTNLTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCG 163

Query:   158 APSKVQFAVLYSXXXXXXXXXXXXRFTLATMGANQFEIPQHQGI-----FFNWFFILTYA 212
              P+K+Q  VL              R      G +QF+    +G+     FFNW+++    
Sbjct:   164 GPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVASFFNWYYMTFTV 223

Query:   213 STVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY 255
               +I+    VYI+D +SW +G  +        VV+F +G   Y
Sbjct:   224 VLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRY 266

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015706 "nitrate transport" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 9.2e-23, P = 9.2e-23
 Identities = 71/232 (30%), Positives = 116/232 (50%)

Query:    69 GWVANLMVYMIQEFHITSINSALISNIVN--GFVNLFPVLGAIIADSFLGSFQVIWISSF 126
             G  +NL++YM  + H  ++ S+  +N+ N  G   L P+LGA +AD+  G +    ISS 
Sbjct:    50 GISSNLVIYMTTKLHQGTVKSS--NNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSA 107

Query:   127 ISLLGTILLDSTATFDSLRPQRCDIG-LSLCKAPSKVQFAVLYSXXXXXXXXXXXXRFTL 185
             I LLG  LL  + +   L+P +C    +  C+  S +Q AV +             +  +
Sbjct:   108 IYLLGMALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNI 167

Query:   186 ATMGANQFEI--PQ---HQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAA 240
             +T+GA+QF+   P+   H+  FFNW+    +  T  ++   VY++DN+ W +G GL+   
Sbjct:   168 STIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLG 227

Query:   241 NLAGVVIFLSGKHFY---FP----------VIVASVKKWKPVLSSRSEDYYQ 279
                 + IFL G   Y    P          VIVAS++K +  +SS S  +Y+
Sbjct:   228 LAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDSTRFYE 279

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2061843 AT2G40460 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 63/192 (32%), Positives = 96/192 (50%)

Query:    69 GWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS 128
             G  +NL+ Y+ +  H  +I+S    N  +G V + P+ GA IADS++G F     SS I 
Sbjct:    47 GIASNLVNYLTKRLHEDTISSVRNVNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIY 106

Query:   129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSXXXXXXXXXXXXRFTLATM 188
             +LG ILL    T  SLRP  C+ G+  C   S +Q    Y             +  ++T 
Sbjct:   107 VLGMILLTMAVTVKSLRPT-CENGV--CNKASSLQVTFFYISLYTIAIGAGGTKPNISTF 163

Query:   189 GANQFEI----PQHQGI-FFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLA 243
             GA+QF+      + Q + FFNW+   ++   + ++   VYI++NL W LG G+     L 
Sbjct:   164 GADQFDSYSIEEKKQKVSFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLV 223

Query:   244 GVVIFLSGKHFY 255
              +V+F  G  FY
Sbjct:   224 SLVVFYIGTPFY 235

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024460001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (577 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
pfam00854	372	pfam00854, PTR2, POT family	6e-09
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	2e-06
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	1e-05
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	1e-04

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 17/141 (12%)

Query: 118 FQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLG 177
           F+ I + S I  +G +LL   A   SL P               VQ A+ Y G+ L  LG
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSP---------------VQVALFYIGLYLIALG 45

Query: 178 LGGLRFTLATMGANQF-EIPQHQ-GIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSG 235
            GG++  ++  GA+QF E    +   FF+WF+    A ++I++    Y++ N+ + LG G
Sbjct: 46  TGGIKPNVSAFGADQFDETQDPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFG 105

Query: 236 LNIAANLAGVVIFLSGKHFYF 256
           L     L  +++FL G   Y 
Sbjct: 106 LPAVGMLLALLVFLLGSRRYK 126

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 16/149 (10%)

Query: 69  GWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS 128
           G    L++Y++         +  I +       L P++GA+IADS+LG F+ I   S + 
Sbjct: 5   GMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVY 64

Query: 129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATM 188
           ++G  L    A      P    + L                G+AL  LG GG++  ++  
Sbjct: 65  VVGHALASLGAVPSLGHPLHDALSL---------------VGLALIALGTGGIKPCVSAF 109

Query: 189 GANQFEIPQHQGIFFNWFFILTYASTVIS 217
           G +QFE  +   + F +F    +A    S
Sbjct: 110 GGDQFE-ERQLSLRFRFFSFFYFAINAGS 137

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 36/198 (18%), Positives = 78/198 (39%), Gaps = 28/198 (14%)

Query: 74  LMVYMIQEF-HITSINSALISNIVNGF---VNLFPVLGAIIADSFLGSFQVIWISSFISL 129
           L++Y+  +       +    + + + +   V L P++G  +AD  LG+ + I + + +  
Sbjct: 44  LILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMA 103

Query: 130 LGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMG 189
           +G ++L  ++                           LY G+AL  +G G  +  ++++ 
Sbjct: 104 IGHLVLAISSVSGP---------------------GGLYIGLALIIVGTGLFKPNISSLL 142

Query: 190 ANQFEI--PQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVI 247
              +    P+  G  F  F++     ++I+      +  N  W +G GL     + G+VI
Sbjct: 143 GELYPKDDPRRDG-GFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI 201

Query: 248 FLSGKHFYFPVIVASVKK 265
           FL G+     +       
Sbjct: 202 FLLGRRHVKGIGGVPDPN 219

Length = 498

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 34/193 (17%)

Query: 69  GWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS 128
           G  A L++Y+  +      ++  + +     V + P+LG  +AD  LG+   + + + + 
Sbjct: 27  GMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM 86

Query: 129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATM 188
            +G ++L ++                    PS      LY  +A+   G G  +  ++ +
Sbjct: 87  AIGHVVLGASEI-----------------HPS-----FLYLSLAIIVCGYGLFKSNVSCL 124

Query: 189 GANQFEI--PQHQGIFFNWFFILTYAS----TVISSAAFVYIEDNLSWRLGSGLNIAANL 242
               +E   P+  G      F L YA+    ++I+  A  Y ++  SW +G GL     +
Sbjct: 125 LGELYEPTDPRRDG-----GFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMI 179

Query: 243 AGVVIFLSG-KHF 254
           AG+VIFL G +HF
Sbjct: 180 AGLVIFLCGNRHF 192

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	99.96
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.95
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.93
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.91
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.9
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.89
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.89
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.75
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.73
PRK03545	390	putative arabinose transporter; Provisional	99.73
TIGR00891	405	2A0112 putative sialic acid transporter.	99.72
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.72
PRK10054	395	putative transporter; Provisional	99.71
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.7
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.69
PRK10504	471	putative transporter; Provisional	99.69
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.69
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.69
PRK05122	399	major facilitator superfamily transporter; Provisi	99.69
PRK12307	426	putative sialic acid transporter; Provisional	99.69
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.68
PRK12382	392	putative transporter; Provisional	99.68
PRK03893	496	putative sialic acid transporter; Provisional	99.68
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.68
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.68
TIGR00895	398	2A0115 benzoate transport.	99.68
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.67
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.67
PRK10091	382	MFS transport protein AraJ; Provisional	99.67
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.67
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.66
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.66
TIGR00900	365	2A0121 H+ Antiporter protein.	99.66
TIGR00893	399	2A0114 d-galactonate transporter.	99.66
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.65
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.65
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.65
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.65
PRK11663	434	regulatory protein UhpC; Provisional	99.64
PRK03699	394	putative transporter; Provisional	99.64
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.63
PRK11043	401	putative transporter; Provisional	99.63
PRK09705	393	cynX putative cyanate transporter; Provisional	99.63
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.63
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.61
PRK10642	490	proline/glycine betaine transporter; Provisional	99.61
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.61
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.61
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.6
PRK09874	408	drug efflux system protein MdtG; Provisional	99.6
PLN00028	476	nitrate transmembrane transporter; Provisional	99.6
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.59
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.58
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.58
PRK03633	381	putative MFS family transporter protein; Provision	99.57
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.57
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.57
PRK15011	393	sugar efflux transporter B; Provisional	99.56
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.55
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.55
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.55
PRK10133	438	L-fucose transporter; Provisional	99.55
PRK15075	434	citrate-proton symporter; Provisional	99.55
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.55
PRK10642	490	proline/glycine betaine transporter; Provisional	99.54
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.53
PRK15011	393	sugar efflux transporter B; Provisional	99.53
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.53
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.53
TIGR00805	633	oat sodium-independent organic anion transporter.	99.52
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.52
PRK10489	417	enterobactin exporter EntS; Provisional	99.51
PRK09952	438	shikimate transporter; Provisional	99.51
PRK09952	438	shikimate transporter; Provisional	99.5
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.5
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.5
TIGR00898	505	2A0119 cation transport protein.	99.5
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.5
KOG0254	513	consensus Predicted transporter (major facilitator	99.49
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.49
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.48
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.48
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.47
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.46
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.46
PRK09705	393	cynX putative cyanate transporter; Provisional	99.45
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.45
PRK03699	394	putative transporter; Provisional	99.45
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.44
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.44
PRK03893	496	putative sialic acid transporter; Provisional	99.43
TIGR00893	399	2A0114 d-galactonate transporter.	99.41
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.41
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.41
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.4
PRK15075	434	citrate-proton symporter; Provisional	99.4
PRK09528	420	lacY galactoside permease; Reviewed	99.4
PRK10489	417	enterobactin exporter EntS; Provisional	99.4
PTZ00207	591	hypothetical protein; Provisional	99.39
TIGR00891	405	2A0112 putative sialic acid transporter.	99.39
PRK11010	491	ampG muropeptide transporter; Validated	99.38
PRK05122	399	major facilitator superfamily transporter; Provisi	99.38
PRK03633	381	putative MFS family transporter protein; Provision	99.38
PRK03545	390	putative arabinose transporter; Provisional	99.38
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.37
TIGR00901	356	2A0125 AmpG-related permease.	99.37
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.37
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.37
PRK12382	392	putative transporter; Provisional	99.37
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.36
PRK09874	408	drug efflux system protein MdtG; Provisional	99.36
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.35
PRK09528	420	lacY galactoside permease; Reviewed	99.35
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.34
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.34
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.34
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.32
PRK11663	434	regulatory protein UhpC; Provisional	99.32
PRK11010	491	ampG muropeptide transporter; Validated	99.32
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.32
KOG2532	466	consensus Permease of the major facilitator superf	99.31
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.31
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.31
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.3
PRK11902	402	ampG muropeptide transporter; Reviewed	99.3
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.29
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.28
KOG0569	485	consensus Permease of the major facilitator superf	99.28
PLN00028	476	nitrate transmembrane transporter; Provisional	99.26
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.25
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.24
PRK10091	382	MFS transport protein AraJ; Provisional	99.24
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.22
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.22
TIGR00900	365	2A0121 H+ Antiporter protein.	99.21
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.21
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.2
PRK12307	426	putative sialic acid transporter; Provisional	99.2
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.19
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.19
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.17
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.17
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.16
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.16
PRK10504	471	putative transporter; Provisional	99.16
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.15
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.15
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.14
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.14
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.13
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.13
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.13
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.12
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.12
TIGR00895	398	2A0115 benzoate transport.	99.12
KOG2533	495	consensus Permease of the major facilitator superf	99.11
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.11
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.11
PRK10133	438	L-fucose transporter; Provisional	99.1
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.08
KOG2615	451	consensus Permease of the major facilitator superf	99.07
PRK11902	402	ampG muropeptide transporter; Reviewed	99.06
PRK09848	448	glucuronide transporter; Provisional	99.05
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.05
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.04
PRK09669	444	putative symporter YagG; Provisional	99.03
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.03
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.03
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.02
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.01
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.98
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.98
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.97
PRK10429	473	melibiose:sodium symporter; Provisional	98.96
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.96
PRK10054	395	putative transporter; Provisional	98.95
PRK10429	473	melibiose:sodium symporter; Provisional	98.93
PRK09669	444	putative symporter YagG; Provisional	98.93
PF13347	428	MFS_2: MFS/sugar transport protein	98.92
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.91
TIGR00901	356	2A0125 AmpG-related permease.	98.9
TIGR00898	505	2A0119 cation transport protein.	98.9
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.9
KOG0569	485	consensus Permease of the major facilitator superf	98.9
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.87
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.86
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.86
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.85
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.84
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.83
PRK11462	460	putative transporter; Provisional	98.83
PRK11043	401	putative transporter; Provisional	98.82
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.82
PF13347	428	MFS_2: MFS/sugar transport protein	98.81
KOG2532	466	consensus Permease of the major facilitator superf	98.81
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.79
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.69
PRK11462	460	putative transporter; Provisional	98.68
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.68
PRK09848	448	glucuronide transporter; Provisional	98.68
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.67
COG2211	467	MelB Na+/melibiose symporter and related transport	98.66
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.57
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.55
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.54
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.49
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.48
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.46
COG0477	338	ProP Permeases of the major facilitator superfamil	98.45
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.42
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.41
COG2211	467	MelB Na+/melibiose symporter and related transport	98.32
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.32
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.29
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.26
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.25
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.22
KOG3626	735	consensus Organic anion transporter [Secondary met	98.16
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.12
KOG2533	495	consensus Permease of the major facilitator superf	98.12
KOG2563	480	consensus Permease of the major facilitator superf	98.11
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.11
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.09
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.98
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.97
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.9
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.89
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.86
PF12832	77	MFS_1_like: MFS_1 like family	97.81
KOG0254	513	consensus Predicted transporter (major facilitator	97.77
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.76
PTZ00207	591	hypothetical protein; Provisional	97.72
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.7
KOG3762	618	consensus Predicted transporter [General function	97.57
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.55
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.53
TIGR00805	633	oat sodium-independent organic anion transporter.	97.41
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.32
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.17
KOG0637	498	consensus Sucrose transporter and related proteins	97.08
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.01
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.87
PRK03612	521	spermidine synthase; Provisional	96.82
PRK15462	493	dipeptide/tripeptide permease D; Provisional	96.78
KOG2563	480	consensus Permease of the major facilitator superf	96.67
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.63
KOG2615	451	consensus Permease of the major facilitator superf	96.49
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.39
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.3
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.02
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.53
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.51
KOG1330	493	consensus Sugar transporter/spinster transmembrane	95.45
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	94.41
KOG3762	618	consensus Predicted transporter [General function	94.35
KOG3098	461	consensus Uncharacterized conserved protein [Funct	94.32
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.23
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.0
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	92.96
KOG2325	488	consensus Predicted transporter/transmembrane prot	91.18
KOG3098	461	consensus Uncharacterized conserved protein [Funct	91.12
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	90.44
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	87.1
KOG3626	735	consensus Organic anion transporter [Secondary met	86.01
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	83.37
KOG3097	390	consensus Predicted membrane protein [Function unk	80.66

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=99.96  E-value=1.2e-27  Score=236.48  Aligned_cols=243  Identities=37%  Similarity=0.566  Sum_probs=216.9

Q ss_pred             cccccCCccccccc--ccCCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 045564           35 AATDTHREAQISNA--KRGGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAI  109 (296)
Q Consensus        35 ~~v~~~~~p~~~~~--~~~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~  109 (296)
                      ..+|++++|..+..  +.+.|+++..+++.+.  + ++||+..++..|+++++|.+...+...++.|.+...+.++++++
T Consensus        16 ~~~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~   95 (571)
T KOG1237|consen   16 TSVDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAF   95 (571)
T ss_pred             ceeeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHH
Confidence            35788887655421  5688999999999998  8 99999999999999999999999999999999999999999999


Q ss_pred             HhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc--CCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhh
Q 045564          110 IADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRC--DIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLAT  187 (296)
Q Consensus       110 laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c--~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~  187 (296)
                      ++|.++||++++.++.+++.+|..++++++..|.+.++.|  ...+..|..++..+...++.++.++++|.|+.+|+..+
T Consensus        96 laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~  175 (571)
T KOG1237|consen   96 LADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLA  175 (571)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchh
Confidence            9999999999999999999999999999988888888776  22234677777778889999999999999999999999


Q ss_pred             hhhccCC---Cc--cchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCchh------
Q 045564          188 MGANQFE---IP--QHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYF------  256 (296)
Q Consensus       188 ~~ad~f~---~~--~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~~~~~~------  256 (296)
                      +.+|||+   ++  ..+.++|+|+|+..|+|.+++-.+..|++++.||.++|.++.+.+++++++|+.+.+.|+      
T Consensus       176 fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~g  255 (571)
T KOG1237|consen  176 FGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRG  255 (571)
T ss_pred             hcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCC
Confidence            9999998   22  234589999999999999999999999999999999999999999999999999998776      


Q ss_pred             -------HHHHHHHhcCCCcCCCCchhh
Q 045564          257 -------PVIVASVKKWKPVLSSRSEDY  277 (296)
Q Consensus       257 -------~v~~~~~~~~~~~~~~~~~~~  277 (296)
                             +|++|+.|||+...+++++++
T Consensus       256 sp~t~i~~Vlvaa~~k~~~~~~~~~~~~  283 (571)
T KOG1237|consen  256 SPKTRIGQVLVAAAFKRKAVVSLDPEEL  283 (571)
T ss_pred             CchhHHHHHHHHHHHHHhccCCCcchhc
Confidence                   999999999999888875554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.95  E-value=5.2e-28  Score=230.86  Aligned_cols=187  Identities=21%  Similarity=0.324  Sum_probs=173.4

Q ss_pred             ccCCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHH
Q 045564           49 KRGGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFH----ITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVI  121 (296)
Q Consensus        49 ~~~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg----~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i  121 (296)
                      ..+|||.++.++.+|+  | +|||+.+.+..|++..++    +++++|..+.+.|....++.+++|||+|||++|+||++
T Consensus        16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI   95 (498)
T COG3104          16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI   95 (498)
T ss_pred             cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence            5679999999999999  9 999999999999999988    99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCC-Cccchh
Q 045564          122 WISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFE-IPQHQG  200 (296)
Q Consensus       122 ~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~-~~~~r~  200 (296)
                      +++.+++++|+++++.+. .                    .+...++++++++++|.|+.++++.++++|++| ++.||+
T Consensus        96 ~lGail~~iGh~~L~~~~-~--------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD  154 (498)
T COG3104          96 VLGAILMAIGHLVLAISS-V--------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRD  154 (498)
T ss_pred             HHHHHHHHHHHHHHhccc-c--------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccC
Confidence            999999999999998763 0                    123578999999999999999999999999998 455799


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCchh
Q 045564          201 IFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYF  256 (296)
Q Consensus       201 ~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~~~~~~  256 (296)
                      .+|+++|++.|+|++++|++.+++.+++||+.+|.++++.+.++++.+...++++.
T Consensus       155 ~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~  210 (498)
T COG3104         155 GGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVK  210 (498)
T ss_pred             CCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhc
Confidence            99999999999999999999999999999999999999999999999988877664

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.93  E-value=6.2e-25  Score=214.97  Aligned_cols=184  Identities=12%  Similarity=0.190  Sum_probs=162.0

Q ss_pred             ccCCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHH
Q 045564           49 KRGGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISS  125 (296)
Q Consensus        49 ~~~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~  125 (296)
                      +++|||.++.+++.++  | ++|++..+++.|+++++|++.+++.++.+.+.+..++.++++|+++||++||||++.++.
T Consensus         9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~   88 (489)
T PRK10207          9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA   88 (489)
T ss_pred             hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence            5689999999999998  8 999999999999999999999999999999999999999999999999779999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCcc-chhhHHH
Q 045564          126 FISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQ-HQGIFFN  204 (296)
Q Consensus       126 ~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~-~r~~~f~  204 (296)
                      +++.+|++.+.++..                      ....++++|+++++|.|..+|+..++++|+||+++ +|++.++
T Consensus        89 ~~~~~g~~~~~~~~~----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~  146 (489)
T PRK10207         89 IVLAIGYFMTGMSLL----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFT  146 (489)
T ss_pred             HHHHHHHHHHHHhcc----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchh
Confidence            999999988876531                      11245678999999999999999999999998443 5688999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCc
Q 045564          205 WFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHF  254 (296)
Q Consensus       205 ~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~~~~  254 (296)
                      ++|++.|+|+.+||.+++++.++.|||++|++..+.+.++++.+...+++
T Consensus       147 ~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~  196 (489)
T PRK10207        147 LFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGM  196 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchh
Confidence            99999999999999999999999999999999877776666666555433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.91  E-value=4e-23  Score=201.50  Aligned_cols=184  Identities=20%  Similarity=0.376  Sum_probs=158.8

Q ss_pred             cCCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHH
Q 045564           50 RGGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSF  126 (296)
Q Consensus        50 ~~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~  126 (296)
                      .+|||.++.+++.++  + ++|++..+++.|+++.+|++..+++.+.+.+.+..+++++++|+++||++||||++.++.+
T Consensus         5 ~~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~i   84 (493)
T PRK15462          5 ASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGAL   84 (493)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence            459999999999888  8 9999999999999999999999999999999999999999999999994499999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCc-cchhhHHHH
Q 045564          127 ISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIP-QHQGIFFNW  205 (296)
Q Consensus       127 l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~-~~r~~~f~~  205 (296)
                      +..+|+++++....                      ....++++..+.++|.|..+++.+++++|+||++ .+|++++++
T Consensus        85 l~~lg~lll~~~~~----------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i  142 (493)
T PRK15462         85 LMAIGHVVLGASEI----------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSL  142 (493)
T ss_pred             HHHHHHHHHHHhhc----------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehH
Confidence            99999876653210                      1123455566677888888999999999999843 479999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCch
Q 045564          206 FFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY  255 (296)
Q Consensus       206 ~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~~~~~  255 (296)
                      +|+..|+|+.++|.+.+++.+.+||+++|.++++.++++++.++..++++
T Consensus       143 ~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l  192 (493)
T PRK15462        143 MYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHF  192 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999888888887777665544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.90  E-value=1.9e-22  Score=196.77  Aligned_cols=184  Identities=18%  Similarity=0.308  Sum_probs=161.6

Q ss_pred             ccCCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHH
Q 045564           49 KRGGRTALLSRTVTCL--T-LGEGWVANLMVYMIQE--FHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWI  123 (296)
Q Consensus        49 ~~~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~--lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i  123 (296)
                      .++|||.++.+++.++  + ++|++..+++.|++++  +|++..+++.+.+.+.++..++++++|+++||++||||++.+
T Consensus         5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~   84 (475)
T TIGR00924         5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL   84 (475)
T ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence            4679999988888888  7 9999999999999988  999999999999999999999999999999996699999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCc--cchhh
Q 045564          124 SSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIP--QHQGI  201 (296)
Q Consensus       124 ~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~--~~r~~  201 (296)
                      +.++..+++++++++.                       +...+++++++.++|.|..+++..++++|++|++  .+|++
T Consensus        85 ~~~~~~~g~~~~~~~~-----------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~  141 (475)
T TIGR00924        85 GGIVLMLGHFMLAMSI-----------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDG  141 (475)
T ss_pred             HHHHHHHHHHHHHhcc-----------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccc
Confidence            9999999988776542                       2346777889999999999999999999999843  35888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCch
Q 045564          202 FFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFY  255 (296)
Q Consensus       202 ~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~~~~~  255 (296)
                      +++++|++.|+|+.+||.+++++.+++||++.|++.++.+++++++++..++.+
T Consensus       142 ~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~  195 (475)
T TIGR00924       142 GFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHML  195 (475)
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHccccc
Confidence            999999999999999999999999989999999998887777766665555433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.89  E-value=5.2e-22  Score=199.62  Aligned_cols=188  Identities=25%  Similarity=0.433  Sum_probs=161.9

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      +|||+.+.+..|+++.+|++.+.+..+...+....++.+++||+++|+++||++++.++.+++.+|++++++++ .|...
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~~~~~   80 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-IPSSG   80 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-Ccccc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999998765 22210


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCC--ccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEI--PQHQGIFFNWFFILTYASTVISSAAFVY  223 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~--~~~r~~~f~~~y~~~~iG~~i~p~v~~~  223 (296)
                                    ...+...++++++++++|.|+++|+..++.+|||++  +++|.++|+|+|+++|+|+++++++.++
T Consensus        81 --------------~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~  146 (654)
T TIGR00926        81 --------------HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPI  146 (654)
T ss_pred             --------------cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          012334577889999999999999999999999983  3358999999999999999999999999


Q ss_pred             hhccc-------cchhhHHHHHHHHHHHHHHHHhCCCchh-------------HHHHHHHhcCCC
Q 045564          224 IEDNL-------SWRLGSGLNIAANLAGVVIFLSGKHFYF-------------PVIVASVKKWKP  268 (296)
Q Consensus       224 l~~~~-------gw~~~F~i~~~~~~~~~~~~~~~~~~~~-------------~v~~~~~~~~~~  268 (296)
                      ++++.       +|.++|.+++++++++++++...+|+|+             ++++.+.|+++.
T Consensus       147 l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~  211 (654)
T TIGR00926       147 LRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFS  211 (654)
T ss_pred             HHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhc
Confidence            98543       6999999999999999999988877764             455667766543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.89  E-value=8.8e-22  Score=193.23  Aligned_cols=181  Identities=17%  Similarity=0.250  Sum_probs=154.5

Q ss_pred             ccCCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHH
Q 045564           49 KRGGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISS  125 (296)
Q Consensus        49 ~~~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~  125 (296)
                      ..+|+|.++.+++.++  + ++|++..+++.|+++++|++..+++++.+.+....+..++++|+++||++|||+++.++.
T Consensus        16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~   95 (500)
T PRK09584         16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGA   95 (500)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            4568888888888887  8 999999999999999999999999998888888888888899999999559999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCC-ccchhhHHH
Q 045564          126 FISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEI-PQHQGIFFN  204 (296)
Q Consensus       126 ~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~-~~~r~~~f~  204 (296)
                      ++..+|+++++++.                      .....+++++++.++|.|...++..++++|+||+ +++|+.+++
T Consensus        96 ~~~~ig~~l~~~~~----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~  153 (500)
T PRK09584         96 IVLAIGYALVAWSG----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFT  153 (500)
T ss_pred             HHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcch
Confidence            99999887776542                      1124567788899999999999999999999984 345667899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhC
Q 045564          205 WFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSG  251 (296)
Q Consensus       205 ~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~  251 (296)
                      ++|++.|+|+.+||.+++++.+++|||+.|++.++.++++++.++..
T Consensus       154 ~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~  200 (500)
T PRK09584        154 MYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFC  200 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999988777766555443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.75  E-value=8.1e-17  Score=157.63  Aligned_cols=172  Identities=8%  Similarity=0.027  Sum_probs=139.8

Q ss_pred             chhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHH
Q 045564           53 RTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLL  130 (296)
Q Consensus        53 ~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~i  130 (296)
                      |..+..+++..+ . ..-.+.....+.+.+++|.+..+.+++.+.+.++...+.+++|+++|| +|||+++.++.+++.+
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFGL   83 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHH
Confidence            444444444444 3 333333444445678999999999999999999999999999999999 7999999999999999


Q ss_pred             HHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHH
Q 045564          131 GTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILT  210 (296)
Q Consensus       131 g~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~  210 (296)
                      +.++++++.                       +...++++|++.|+|.+...+.....+.+.++++++|+.+++++....
T Consensus        84 ~~~~~~~a~-----------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~  140 (495)
T PRK14995         84 ASLAAAFSP-----------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVG  140 (495)
T ss_pred             HHHHHHHcC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            988876542                       356789999999999999888888888787754557999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHH
Q 045564          211 YASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       211 ~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      ++|..+||.+++++.+..||||.|++...+.++.+++.
T Consensus       141 ~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~  178 (495)
T PRK14995        141 SGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLT  178 (495)
T ss_pred             HHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999877655554443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.73  E-value=2.4e-16  Score=150.82  Aligned_cols=168  Identities=11%  Similarity=-0.019  Sum_probs=137.3

Q ss_pred             CchhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHH
Q 045564           52 GRTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISL  129 (296)
Q Consensus        52 ~~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~  129 (296)
                      +|+....+++..+ . ............+.+++|++..+.+++.+++.++..++.++.|+++|| +|||+++.++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~   84 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVLWG   84 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHHHH
Confidence            4554444444433 2 333334455568899999999999999999999999999999999999 799999999999999


Q ss_pred             HHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHH
Q 045564          130 LGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFIL  209 (296)
Q Consensus       130 ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~  209 (296)
                      ++.++.+++.                       +...++++|++.|++.+...+....++.|.+|+ ++|+...++++.+
T Consensus        85 ~~~~~~~~~~-----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-~~rg~~~~~~~~~  140 (412)
T TIGR02332        85 IASTATMFAT-----------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPA-YFRARANALFMIA  140 (412)
T ss_pred             HHHHHHHHhc-----------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH-HHHHHHHHHHHHH
Confidence            8888776542                       346788999999999999999888999999994 4689999999999


Q ss_pred             HHHHHHHHHHHHHhhhc------cccchhhHHHHHHHHHHH
Q 045564          210 TYASTVISSAAFVYIED------NLSWRLGSGLNIAANLAG  244 (296)
Q Consensus       210 ~~iG~~i~p~v~~~l~~------~~gw~~~F~i~~~~~~~~  244 (296)
                      .++|..+++.+++++.+      ..|||+.|++.++..++.
T Consensus       141 ~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~  181 (412)
T TIGR02332       141 MPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVIL  181 (412)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHH
Confidence            99999999999998864      369999999977755443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.73  E-value=2.9e-16  Score=148.46  Aligned_cols=170  Identities=12%  Similarity=0.070  Sum_probs=137.7

Q ss_pred             CchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q 045564           52 GRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS  128 (296)
Q Consensus        52 ~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~  128 (296)
                      +|..++.+....+  . ..+. ...+...+.+++|.+..+.+++.+.+..+..++.++.|+++|| +||||++.++.++.
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~   84 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFV-PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLF   84 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHH-HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHH
Confidence            4444444444334  3 3332 2333456778999999999999999999999999999999999 79999999999999


Q ss_pred             HHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHH
Q 045564          129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFI  208 (296)
Q Consensus       129 ~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~  208 (296)
                      .++.+...+..                       +...++++|++.|++.+...+...+++.|.+|+ ++|++.++++..
T Consensus        85 ~~~~~~~~~~~-----------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~g~~~~  140 (390)
T PRK03545         85 IASHVLSALAW-----------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPA-GKKAQALSLLAT  140 (390)
T ss_pred             HHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-hhhhhHHHHHHH
Confidence            88877765542                       356788899999999998889999999999984 478999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Q 045564          209 LTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       209 ~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~  247 (296)
                      +.++|..++|.+++.+.+..|||+.|++.++..++..+.
T Consensus       141 ~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~  179 (390)
T PRK03545        141 GTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLL  179 (390)
T ss_pred             HHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998899999999988766554433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.72  E-value=1.1e-15  Score=143.40  Aligned_cols=172  Identities=13%  Similarity=0.092  Sum_probs=139.6

Q ss_pred             cCCchhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH
Q 045564           50 RGGRTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFI  127 (296)
Q Consensus        50 ~~~~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l  127 (296)
                      +.+|+.....++..+ . ............+.+++|++..+.+++.+++..+..++.++.|+++|| +|||+++.++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~   86 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTSIVL   86 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHH
Confidence            456666555555555 3 333344555567788999999999999999999999999999999999 7999999999988


Q ss_pred             HHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHH
Q 045564          128 SLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFF  207 (296)
Q Consensus       128 ~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y  207 (296)
                      ..++.+++.+..                       +...+++.|++.|++.+...+...+++.|.+|+ ++|+...+++.
T Consensus        87 ~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~  142 (405)
T TIGR00891        87 FSAGTLACGFAP-----------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPK-HLRNKASGLLI  142 (405)
T ss_pred             HHHHHHHHHHhc-----------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCCh-hhhhHHHHHHH
Confidence            888777665432                       346788899999999999999999999999984 47899999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccc--chhhHHHHHHHHHHHHH
Q 045564          208 ILTYASTVISSAAFVYIEDNLS--WRLGSGLNIAANLAGVV  246 (296)
Q Consensus       208 ~~~~iG~~i~p~v~~~l~~~~g--w~~~F~i~~~~~~~~~~  246 (296)
                      .+.++|..+++.+.+.+.+..+  ||+.|++.++..++.++
T Consensus       143 ~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~  183 (405)
T TIGR00891       143 SGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALW  183 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            9999999999999998887665  99999987665554443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.72  E-value=8.7e-16  Score=146.11  Aligned_cols=172  Identities=15%  Similarity=0.107  Sum_probs=141.4

Q ss_pred             ccCCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHH
Q 045564           49 KRGGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISS  125 (296)
Q Consensus        49 ~~~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~  125 (296)
                      ++..|+.+..+.+..+  . ..|.....++. +.+++|.+..+.++.++.+..+..++.++.|+++|| +||||.+.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~   92 (394)
T PRK10213         15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFA   92 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHH
Confidence            3446766555555444  3 44444444544 567899999999999999999999999999999999 79999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHH
Q 045564          126 FISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNW  205 (296)
Q Consensus       126 ~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~  205 (296)
                      ++..++.+++..+.                       +.+.+++.|++.|++.|...+...+++.|.+|++ +|+.+.++
T Consensus        93 ~~~~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~-~~~~a~~~  148 (394)
T PRK10213         93 VLLTLSCLLVSFAN-----------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPR-TVPKALSV  148 (394)
T ss_pred             HHHHHHHHHHHHHC-----------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHh-HHHHHHHH
Confidence            99988877665432                       4578899999999999999999999999999844 78999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Q 045564          206 FFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVV  246 (296)
Q Consensus       206 ~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~  246 (296)
                      +..+.++|..++|.+++++.+.+|||+.|++.++..++..+
T Consensus       149 ~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        149 IFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999989999999998775554443

>PRK10054 putative transporter; Provisional

Probab=99.71  E-value=7.9e-16  Score=146.44  Aligned_cols=170  Identities=12%  Similarity=0.044  Sum_probs=138.7

Q ss_pred             CchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q 045564           52 GRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS  128 (296)
Q Consensus        52 ~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~  128 (296)
                      .+|....++...+  . +++....+++.|+++++|++..+.+++.+++.+...++.++.|+++|| +|||+++.++.++.
T Consensus         5 ~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~   83 (395)
T PRK10054          5 LRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAF   83 (395)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHH
Confidence            3444555555455  5 677778889999999999999999999999999999999999999999 79999999999888


Q ss_pred             HHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHH
Q 045564          129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFI  208 (296)
Q Consensus       129 ~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~  208 (296)
                      .++.+++.+..                       +...+++.+.+.+.+.+...+...+..+|.+|++ +|++.+++.+.
T Consensus        84 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~  139 (395)
T PRK10054         84 ASGFIAIPLVN-----------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSST-SKTKIFSLNYT  139 (395)
T ss_pred             HHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh-HHHHHHHHHHH
Confidence            88776655432                       2345666677777777777888899999999844 78999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Q 045564          209 LTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       209 ~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~  247 (296)
                      ..++|..++|.+++++.+ .+|+..|++.+++.+++++.
T Consensus       140 ~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~  177 (395)
T PRK10054        140 MLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVF  177 (395)
T ss_pred             HHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHH
Confidence            999999999999999875 69999999888766665443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.70  E-value=6.9e-17  Score=152.61  Aligned_cols=144  Identities=33%  Similarity=0.624  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCC--
Q 045564          118 FQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEI--  195 (296)
Q Consensus       118 ~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~--  195 (296)
                      +|++.++.+++.+|++++++++ .|...             +++.+...++++++++++|.|+.+|++.++++|||++  
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~-~~~~~-------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~   66 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSA-IPPSL-------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD   66 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHH-TSSSC-------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred             CHhhhHHHHHHHHHHHHhHHHH-hcchh-------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence            5899999999999999988887 33321             1223567899999999999999999999999999983  


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCchh---------------HHHH
Q 045564          196 PQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHFYF---------------PVIV  260 (296)
Q Consensus       196 ~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~~~~~~---------------~v~~  260 (296)
                      +++|.++|+|||+++|+|+.+++.+.+|+++++||.++|+++.+++++++++++.++++|+               .+++
T Consensus        67 ~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~  146 (372)
T PF00854_consen   67 DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLV  146 (372)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHH
T ss_pred             hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHH
Confidence            5689999999999999999999999999999999999999999999999999999988876               5667


Q ss_pred             HHHhcCCCcCCCCch
Q 045564          261 ASVKKWKPVLSSRSE  275 (296)
Q Consensus       261 ~~~~~~~~~~~~~~~  275 (296)
                      ++.|+++...|++..
T Consensus       147 ~~~~~~~~~~~~~~~  161 (372)
T PF00854_consen  147 AAFKKRKLAVPKGSS  161 (372)
T ss_dssp             HHHHHHCCCH-HHHH
T ss_pred             HHHHHhhcccccchH
Confidence            888888887765433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.69  E-value=9.4e-16  Score=148.18  Aligned_cols=155  Identities=14%  Similarity=0.127  Sum_probs=133.6

Q ss_pred             HHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 045564           68 EGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQ  147 (296)
Q Consensus        68 y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~  147 (296)
                      ..+.....+.+.+++|.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.+++..+.        
T Consensus        18 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~--------   88 (485)
T TIGR00711        18 STIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGSLLCGVAP--------   88 (485)
T ss_pred             HHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHHhCcC--------
Confidence            3344455567778999999999999999999999999999999999 7999999999999998887765432        


Q ss_pred             ccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 045564          148 RCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDN  227 (296)
Q Consensus       148 ~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~  227 (296)
                                     +...++++|++.|++.+...+...+++.|.+|+ ++|+.++++++....+|..++|.+++++.++
T Consensus        89 ---------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  152 (485)
T TIGR00711        89 ---------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP-EKRGRAMAIWGLTVLVAPALGPTLGGWIIEN  152 (485)
T ss_pred             ---------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHhhhhhccHhHhccC
Confidence                           346788999999999999999999999999984 4789999999999999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHH
Q 045564          228 LSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       228 ~gw~~~F~i~~~~~~~~~~~  247 (296)
                      +|||+.|++.++..++..++
T Consensus       153 ~~w~~~f~~~~~~~~~~~~~  172 (485)
T TIGR00711       153 YHWRWIFLINVPIGIIVVVV  172 (485)
T ss_pred             cCceehhhhhhHHHHHHHHH
Confidence            99999999987765554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10504 putative transporter; Provisional

Probab=99.69  E-value=1.8e-15  Score=146.31  Aligned_cols=169  Identities=11%  Similarity=0.057  Sum_probs=136.5

Q ss_pred             hHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHH
Q 045564           55 ALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLG  131 (296)
Q Consensus        55 ~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig  131 (296)
                      ..+.+.+..+  . ..+.+...++.|. +++|.+..+.+++.+.+.++..++.+++|+++|| +||||++..+.++..++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~   88 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHH
Confidence            3444444444  3 4444555666665 5799999999999999999999999999999999 79999999998888887


Q ss_pred             HHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHH
Q 045564          132 TILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTY  211 (296)
Q Consensus       132 ~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~  211 (296)
                      .+++.++.                       +...++++|++.|++.+...+...+.+.|.+| +++|++.+++++...+
T Consensus        89 ~~~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  144 (471)
T PRK10504         89 SLFCALSG-----------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVP-REQYMAAMTFVTLPGQ  144 (471)
T ss_pred             HHHHHHhC-----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHH
Confidence            76654331                       24567888999999999999999999999998 4478899999999999


Q ss_pred             HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHH
Q 045564          212 ASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFL  249 (296)
Q Consensus       212 iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~  249 (296)
                      +|..++|.+++++.+..|||+.|++......++.++..
T Consensus       145 ~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~  182 (471)
T PRK10504        145 VGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATL  182 (471)
T ss_pred             HHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999989999999998776555554443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.69  E-value=2.3e-17  Score=156.48  Aligned_cols=173  Identities=12%  Similarity=0.096  Sum_probs=143.4

Q ss_pred             cCCchhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH
Q 045564           50 RGGRTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFI  127 (296)
Q Consensus        50 ~~~~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l  127 (296)
                      +..++.+..+++..+ + +--........-..+.+|++....+.+.+.+.+...+..|+.|+++|| +.||+++.+|..+
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~i  107 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIFI  107 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHHH
Confidence            444555555555555 3 322233445556677899999999999999999999999999999999 6999999999999


Q ss_pred             HHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHH
Q 045564          128 SLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFF  207 (296)
Q Consensus       128 ~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y  207 (296)
                      +.++.+...+..                       .++.+.+.|.+.|+|.+.+.+..+++++|.||++ .|++.++++|
T Consensus       108 W~~Av~~~~fs~-----------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~-~Rs~~~~ify  163 (493)
T KOG1330|consen  108 WTLAVFASGFSN-----------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD-KRSRVLGIFY  163 (493)
T ss_pred             HHHHHHHHHHHH-----------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcch-hhhHHHHHhh
Confidence            999887776553                       4678899999999999999999999999999955 7999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccc-chhhHHHHHHHHHHHHHH
Q 045564          208 ILTYASTVISSAAFVYIEDNLS-WRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       208 ~~~~iG~~i~p~v~~~l~~~~g-w~~~F~i~~~~~~~~~~~  247 (296)
                      +++++|.++|.++++++.+..+ |||+|++.++..++..++
T Consensus       164 ~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L  204 (493)
T KOG1330|consen  164 FAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLL  204 (493)
T ss_pred             hhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHH
Confidence            9999999999999999988766 999999988865554433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.69  E-value=1.8e-15  Score=139.00  Aligned_cols=152  Identities=17%  Similarity=0.239  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccC
Q 045564           71 VANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCD  150 (296)
Q Consensus        71 ~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~  150 (296)
                      ...++.++.+++|.+..+.+++.+++.++..++.++.|+++|| +||||++.++.++..++.++..++.           
T Consensus        16 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~-----------   83 (352)
T PF07690_consen   16 SPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLAFAS-----------   83 (352)
T ss_dssp             HHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhhhhh-----------
Confidence            3444448889999999999999999999999999999999999 7999999999999998855544321           


Q ss_pred             CCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 045564          151 IGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSW  230 (296)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw  230 (296)
                                  +.+.++++|++.|++.+...+...+++.|.+|+ ++|+..+++.+.+.++|..++|.+++++.+..||
T Consensus        84 ------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~  150 (352)
T PF07690_consen   84 ------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPP-EERGRAFGILSAGFSLGSILGPLLGGFLISYFGW  150 (352)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHH
T ss_pred             ------------hHHHHhhhccccccccccccccccccccccchh-hhhhhccccccchhhhhhhcccchhhhhhhcccc
Confidence                        234788999999999999999999999999995 4789999999999999999999999999988999


Q ss_pred             hhhHHHHHHHHHHHHHH
Q 045564          231 RLGSGLNIAANLAGVVI  247 (296)
Q Consensus       231 ~~~F~i~~~~~~~~~~~  247 (296)
                      ++.|++.++..++..++
T Consensus       151 ~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  151 RWAFLISAILSLIAAIL  167 (352)
T ss_dssp             CCHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhhhhhh
Confidence            99999999987776653

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.69  E-value=1.4e-15  Score=143.91  Aligned_cols=176  Identities=16%  Similarity=0.075  Sum_probs=138.4

Q ss_pred             chhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHH
Q 045564           53 RTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISL  129 (296)
Q Consensus        53 ~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~  129 (296)
                      +|.+..+....+  . ........++.|+.+++|.|..+.+++.+++.++..++.++.|+++|| +||||++.++.++..
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~   92 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCA   92 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHH
Confidence            334444444444  3 444456678888999999999999999999999999999999999999 799999999998888


Q ss_pred             HHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHH
Q 045564          130 LGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFIL  209 (296)
Q Consensus       130 ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~  209 (296)
                      ++.+.+.++.+....               ...+...+++.|++.|++.+...+...+++.|.+|+ ++|++..+++..+
T Consensus        93 ~~~~~~~~~~~~~~~---------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~  156 (399)
T PRK05122         93 LSGLLYLLAGLLAAW---------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGA-LHTGRVISWNGIA  156 (399)
T ss_pred             HHHHHHHHhhhhhcc---------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcCh-hhhccchhhhhhh
Confidence            776665544311100               001345688899999999999999999999999984 4688899988888


Q ss_pred             HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Q 045564          210 TYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGV  245 (296)
Q Consensus       210 ~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~  245 (296)
                      .++|..++|.+++++.+..||++.|++..+..++..
T Consensus       157 ~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~  192 (399)
T PRK05122        157 TYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGL  192 (399)
T ss_pred             hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            899999999999999988999998887666544433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.69  E-value=2.4e-15  Score=143.30  Aligned_cols=167  Identities=13%  Similarity=0.106  Sum_probs=137.0

Q ss_pred             CCchhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q 045564           51 GGRTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS  128 (296)
Q Consensus        51 ~~~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~  128 (296)
                      .+++.+....+..+ . ..+....++..++.+++|.+..+.+.+.+++.++..++.++.|+++|| +|||+++.++.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~~   93 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHH
Confidence            34454444444333 2 333344556667788999999999999999999999999999999999 79999999999999


Q ss_pred             HHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHH
Q 045564          129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFI  208 (296)
Q Consensus       129 ~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~  208 (296)
                      .++.++.+++.                       +...++++|++.|++.|...+....++.|.+|++ +|++..+++..
T Consensus        94 ~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~-~r~~~~~~~~~  149 (426)
T PRK12307         94 SVGTGLSGLAS-----------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH-LKSKASAFLVS  149 (426)
T ss_pred             HHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh-HhhHhhhHHHH
Confidence            98887766542                       3567889999999999999999999999999944 68899999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Q 045564          209 LTYASTVISSAAFVYIEDNLSWRLGSGLNIAANL  242 (296)
Q Consensus       209 ~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~  242 (296)
                      +..+|..+++.+.+++.+..|||+.|++..+..+
T Consensus       150 ~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~  183 (426)
T PRK12307        150 GFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVL  183 (426)
T ss_pred             HHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHH
Confidence            9999999999999999888999999998665443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.68  E-value=3.2e-15  Score=141.51  Aligned_cols=171  Identities=16%  Similarity=0.066  Sum_probs=135.9

Q ss_pred             cCCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHH
Q 045564           50 RGGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSF  126 (296)
Q Consensus        50 ~~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~  126 (296)
                      +.+|..+...+...+  . ..+. .....+.+.+++|.+..+.+++.+.+.++..++.++.|+++|| +||||++.++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~   88 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQS-AGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVA   88 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHH
Confidence            345555554444444  2 2222 2333346668899999999999999999999999999999999 799999999998


Q ss_pred             HHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHH
Q 045564          127 ISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWF  206 (296)
Q Consensus       127 l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~  206 (296)
                      +..++.+++.+..                       +...+++.|++.|++.+...+...+++.|.+|+ ++|++..+++
T Consensus        89 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~  144 (406)
T PRK11551         89 LFGLFSLATAQAW-----------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGP-RLRGTAVSLM  144 (406)
T ss_pred             HHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH-HHHHHHHHHH
Confidence            8887766554432                       346778889999999999999999999999984 4789999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Q 045564          207 FILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVV  246 (296)
Q Consensus       207 y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~  246 (296)
                      +...++|+.+++.+++.+.+..+|++.|++.+++.++..+
T Consensus       145 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (406)
T PRK11551        145 YCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVP  184 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888888999999987765544443

>PRK12382 putative transporter; Provisional

Probab=99.68  E-value=3.3e-15  Score=141.12  Aligned_cols=172  Identities=12%  Similarity=0.079  Sum_probs=133.8

Q ss_pred             chhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHH
Q 045564           53 RTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISL  129 (296)
Q Consensus        53 ~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~  129 (296)
                      .+.++.+++..+  . ........++.|+.+++|.|..+.+.+.+.+.+...++.++.|+++|| +||||++.++.+...
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~   92 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACG   92 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHH
Confidence            334444444444  3 444455667778999999999999999999999999999999999999 799999999888777


Q ss_pred             HHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHH
Q 045564          130 LGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFIL  209 (296)
Q Consensus       130 ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~  209 (296)
                      ++.+...+....+...               ..+...++++|++.|++.+...+...+.+.|.+|+ ++|+++++++..+
T Consensus        93 ~~~~~~~~~~~~~~~~---------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~a~~~~~~~  156 (392)
T PRK12382         93 LAGLAYLLAAILPVSA---------------PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGP-KHSGKVMSWNGMA  156 (392)
T ss_pred             HHHHHHHhhhccccch---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc-cccchhhhHHHHH
Confidence            6554333222111100               12456788999999999998888888899999984 4789999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Q 045564          210 TYASTVISSAAFVYIEDNLSWRLGSGLNIAAN  241 (296)
Q Consensus       210 ~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~  241 (296)
                      .++|..++|.+++++.+.+||++.+.+..+..
T Consensus       157 ~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~  188 (392)
T PRK12382        157 MYGALAAGAPLGLLLHSHFGFAALALTTMVLP  188 (392)
T ss_pred             HHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            99999999999999988889998777665543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.68  E-value=3.7e-15  Score=144.89  Aligned_cols=168  Identities=13%  Similarity=0.095  Sum_probs=138.5

Q ss_pred             CCchhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q 045564           51 GGRTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS  128 (296)
Q Consensus        51 ~~~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~  128 (296)
                      .+|+.+..++...+ . ..+.....+..++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~   95 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHH
Confidence            45555544444444 4 444455566667888999999999999999999999999999999999 79999999999988


Q ss_pred             HHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHH
Q 045564          129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFI  208 (296)
Q Consensus       129 ~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~  208 (296)
                      .++.+++.+..                       +...+++.|++.|++.++..+...+++.|.+|+ ++|+..+++++.
T Consensus        96 ~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~  151 (496)
T PRK03893         96 SVGTLACGFAP-----------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK-HLRNKASGFLIS  151 (496)
T ss_pred             HHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHH
Confidence            88877766542                       356788899999999999999999999999984 478899999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Q 045564          209 LTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLA  243 (296)
Q Consensus       209 ~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~  243 (296)
                      +.++|..++|.+.+++.+.+|||+.|++.++..++
T Consensus       152 ~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~  186 (496)
T PRK03893        152 GFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIF  186 (496)
T ss_pred             HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999886554433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.68  E-value=2.9e-15  Score=139.88  Aligned_cols=150  Identities=11%  Similarity=0.049  Sum_probs=129.5

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCC
Q 045564           74 LMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGL  153 (296)
Q Consensus        74 l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~  153 (296)
                      ..+.+.+++|.+..+.+++.+++..+..++.++.|+++|| +||||++.++.++..++.+++....              
T Consensus        27 ~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~--------------   91 (385)
T TIGR00710        27 AFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFALSSLGLALSN--------------   91 (385)
T ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHHc--------------
Confidence            3446678899999999999999999999999999999999 7999999999998888777665432              


Q ss_pred             cCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhh
Q 045564          154 SLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLG  233 (296)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~  233 (296)
                               +...+++.|++.|++.+...+...+++.|.+|+ ++|+..+++.+...++|..++|.+++++.+..+|++.
T Consensus        92 ---------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~  161 (385)
T TIGR00710        92 ---------NIETLLVLRFVQAFGASAGSVISQALVRDIYPG-EELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAI  161 (385)
T ss_pred             ---------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence                     345788889999999999999999999999984 4789999999999999999999999999988899999


Q ss_pred             HHHHHHHHHHHHHHH
Q 045564          234 SGLNIAANLAGVVIF  248 (296)
Q Consensus       234 F~i~~~~~~~~~~~~  248 (296)
                      |++.++..++..+..
T Consensus       162 ~~~~~~~~~~~~~~~  176 (385)
T TIGR00710       162 FAFLSLAGILLSALI  176 (385)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            998877665554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.68  E-value=4.5e-15  Score=140.31  Aligned_cols=178  Identities=16%  Similarity=0.097  Sum_probs=153.8

Q ss_pred             cCCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHH
Q 045564           50 RGGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSF  126 (296)
Q Consensus        50 ~~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~  126 (296)
                      +..|..++.+.+..|  . +-| +...+.+-+.+++|+|..++++.+++|..+..++.++...+.|| +.||++++....
T Consensus         9 ~~~~~~l~aLa~~~F~igttEf-v~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEF-VPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHH-HHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHH
Confidence            345556666666666  3 444 44555566778999999999999999999999999999999999 799999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHH
Q 045564          127 ISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWF  206 (296)
Q Consensus       127 l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~  206 (296)
                      ++++|.++.+++.                       ++..++++|++.++..|..++...+..+++.|++ +|+++.++.
T Consensus        87 lFi~~n~l~alAp-----------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~-~~~~Aiaiv  142 (394)
T COG2814          87 LFIVSNLLSALAP-----------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPG-KRGRALALV  142 (394)
T ss_pred             HHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-chhhHHHHH
Confidence            9999999988874                       4678999999999999999999999999999954 799999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCC
Q 045564          207 FILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKH  253 (296)
Q Consensus       207 y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~~~  253 (296)
                      +.+..++..+|..++.++.|.+|||+.|++-+++.++.++..+...|
T Consensus       143 ~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         143 FTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999988877777766655555

>TIGR00895 2A0115 benzoate transport

Probab=99.68  E-value=2.3e-15  Score=140.43  Aligned_cols=169  Identities=15%  Similarity=0.082  Sum_probs=135.9

Q ss_pred             CchhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHH
Q 045564           52 GRTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISL  129 (296)
Q Consensus        52 ~~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~  129 (296)
                      +|+.+...+...+ . ..+.......+++.+++|.+..+.+++.++..++..++.++.|+++|| +|||+.+.++.++..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~   93 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLFS   93 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHHH
Confidence            4444444444444 3 333344555667778899999999999999999999999999999999 799999999998888


Q ss_pred             HHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHH
Q 045564          130 LGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFIL  209 (296)
Q Consensus       130 ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~  209 (296)
                      ++.+++.+..                       +...+++.+++.|++.+...+...++++|.+|+ ++|+..++++..+
T Consensus        94 ~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~  149 (398)
T TIGR00895        94 VFTLLCALAT-----------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK-RFRGTAVGLMFCG  149 (398)
T ss_pred             HHHHHHHHcc-----------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCH-HhhchhHhhHhhH
Confidence            8776655432                       345678889999999999999999999999984 4789999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Q 045564          210 TYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGV  245 (296)
Q Consensus       210 ~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~  245 (296)
                      .++|..++|.+.+++.+..||++.|++.++...+..
T Consensus       150 ~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  185 (398)
T TIGR00895       150 YPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL  185 (398)
T ss_pred             HHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHH
Confidence            999999999999999998999999998865443333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.67  E-value=5.1e-15  Score=141.11  Aligned_cols=156  Identities=12%  Similarity=0.116  Sum_probs=136.0

Q ss_pred             H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccC
Q 045564           65 T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDS  143 (296)
Q Consensus        65 ~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~  143 (296)
                      . +.+.+...++.|+.+++|.|..+.+.+.+.+.+...+..+++|+++|| +|||+++.++.++..++.+.+....    
T Consensus        23 ~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~----   97 (400)
T PRK11646         23 VLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFATMAIAH----   97 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHHHHHHhc----
Confidence            6 777788889999999999999999999999999999999999999999 7999999999999988877665432    


Q ss_pred             CCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 045564          144 LRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVY  223 (296)
Q Consensus       144 ~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~  223 (296)
                                         +.+.+++.+++.+++.+...+...+.+.|.+|+ ++|++++++.+...++|..+||.++++
T Consensus        98 -------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~g~~ig~~l~g~  157 (400)
T PRK11646         98 -------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP-HQRGRFFSLLMMQDSAGAVIGALLGSW  157 (400)
T ss_pred             -------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               245677889999999988889999999999984 478999999999999999999999999


Q ss_pred             hhccccchhhHHHHHHHHHHHHH
Q 045564          224 IEDNLSWRLGSGLNIAANLAGVV  246 (296)
Q Consensus       224 l~~~~gw~~~F~i~~~~~~~~~~  246 (296)
                      +. .+||++.|++.++..++..+
T Consensus       158 l~-~~g~~~~f~~~~~~~~~~~i  179 (400)
T PRK11646        158 LL-QYDFRLVCATGAVLFVLAAA  179 (400)
T ss_pred             HH-HhhHHHHHHHHHHHHHHHHH
Confidence            98 67999999998776555443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.67  E-value=3.2e-15  Score=152.56  Aligned_cols=162  Identities=15%  Similarity=0.153  Sum_probs=133.2

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRC  149 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c  149 (296)
                      +...+.+++.+++|++..+.+++.+++.++..++.+++|+++|| +|||++++++.++..++.++++++.          
T Consensus       185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~----------  253 (742)
T TIGR01299       185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQ----------  253 (742)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence            45556677888999999999999999999999999999999999 7999999999998888877766542          


Q ss_pred             CCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc--
Q 045564          150 DIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDN--  227 (296)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~--  227 (296)
                                   +...++++|++.|+|.|+..+..+++++|.+|. +.|+..++++.+...+|.++++.++.++...  
T Consensus       254 -------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~-~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       254 -------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ-EKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             -------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                         356788899999999999999999999999994 4789999998888899999988877665432  


Q ss_pred             -----------ccchhhHHHHHHHHHHHHHH--HHhCCCchh
Q 045564          228 -----------LSWRLGSGLNIAANLAGVVI--FLSGKHFYF  256 (296)
Q Consensus       228 -----------~gw~~~F~i~~~~~~~~~~~--~~~~~~~~~  256 (296)
                                 .+||+.|++.++..++.+++  +++.+|+|.
T Consensus       320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL  361 (742)
T TIGR01299       320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFF  361 (742)
T ss_pred             chhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence                       36899888877755554443  356777775

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.67  E-value=4e-15  Score=140.57  Aligned_cols=150  Identities=10%  Similarity=0.072  Sum_probs=128.5

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCC
Q 045564           73 NLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIG  152 (296)
Q Consensus        73 ~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~  152 (296)
                      ...+.+.+++|.+..+.+++.+.+..+..++.++.|+++|| +||||++.++.++..++.++++.+.             
T Consensus        24 ~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~l~~~~~-------------   89 (382)
T PRK10091         24 GVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVIGNAMFTLSS-------------   89 (382)
T ss_pred             hChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHHHHHHHHHhC-------------
Confidence            34456678999999999999999999999999999999999 7999999999999998887766542             


Q ss_pred             CcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchh
Q 045564          153 LSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRL  232 (296)
Q Consensus       153 ~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~  232 (296)
                                +.+.+++.|++.|++.+...+...+.+.|.+|+ ++|+..++.+..+..+|..++|.+++++.+..|||+
T Consensus        90 ----------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~  158 (382)
T PRK10091         90 ----------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP-GKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRY  158 (382)
T ss_pred             ----------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh-HHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHH
Confidence                      356788899999999998888888889999884 467888888888889999999999999998899999


Q ss_pred             hHHHHHHHHHHHHHH
Q 045564          233 GSGLNIAANLAGVVI  247 (296)
Q Consensus       233 ~F~i~~~~~~~~~~~  247 (296)
                      .|++.++..++.++.
T Consensus       159 ~f~~~~~~~~~~~~~  173 (382)
T PRK10091        159 TFLLIAVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999988765554443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.67  E-value=4.9e-15  Score=141.92  Aligned_cols=146  Identities=9%  Similarity=0.016  Sum_probs=125.7

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCc
Q 045564           77 YMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLC  156 (296)
Q Consensus        77 yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~  156 (296)
                      .+.+++|.+..++++.++++.++..++.+++|+++|| +||||++.++.+++.++.++..++.                 
T Consensus        41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~-----------------  102 (413)
T PRK15403         41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFTT-----------------  102 (413)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHcC-----------------
Confidence            4678899999999999999999999999999999999 7999999999999888877665442                 


Q ss_pred             CCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHH
Q 045564          157 KAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGL  236 (296)
Q Consensus       157 ~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i  236 (296)
                            +...++++|++.|++.+...+...+...|.+|+ ++|.+.++++..+.++|..+||.+++++.+..|||+.|++
T Consensus       103 ------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~  175 (413)
T PRK15403        103 ------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQ-TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI  175 (413)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence                  356788999999999887677777888999984 4678889998999999999999999999988899999999


Q ss_pred             HHHHHHHHHHH
Q 045564          237 NIAANLAGVVI  247 (296)
Q Consensus       237 ~~~~~~~~~~~  247 (296)
                      .++..+++++.
T Consensus       176 ~~~~~~i~~~~  186 (413)
T PRK15403        176 IAVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHHHH
Confidence            88766665544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.66  E-value=2.4e-15  Score=143.09  Aligned_cols=149  Identities=17%  Similarity=0.186  Sum_probs=123.6

Q ss_pred             HHHHHhCCC--------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCc
Q 045564           77 YMIQEFHIT--------SINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQR  148 (296)
Q Consensus        77 yl~~~lg~s--------~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~  148 (296)
                      ....+++.+        ..+.+++.+++.++..++.++.|+++|| +|||+++.++.++..++.++..+....       
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~-------  124 (481)
T TIGR00879        53 LPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAFA-------  124 (481)
T ss_pred             cHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhccc-------
Confidence            444555555        8899999999999999999999999999 799999999999999888777554310       


Q ss_pred             cCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHH---Hhhh
Q 045564          149 CDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAF---VYIE  225 (296)
Q Consensus       149 c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~---~~l~  225 (296)
                                   .+.+.++++|++.|+|.+...+...++++|.+|++ +|+...++++.+.++|..+++.++   ..+.
T Consensus       125 -------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  190 (481)
T TIGR00879       125 -------------LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKA-LRGALTSLYQLAITFGILVAYGFGSGKVSLN  190 (481)
T ss_pred             -------------cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChh-hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence                         12457889999999999999999999999999844 789999999999999999999988   6666


Q ss_pred             ccccchhhHHHHHHHHHHHHHH
Q 045564          226 DNLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       226 ~~~gw~~~F~i~~~~~~~~~~~  247 (296)
                      +..+||+.|++.++..++.++.
T Consensus       191 ~~~~w~~~f~~~~~~~~~~~~~  212 (481)
T TIGR00879       191 NTLGWRIPLGLQLIPAGLLFLG  212 (481)
T ss_pred             CCccHHHHHHHHHHHHHHHHHH
Confidence            7789999999976655544433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.66  E-value=8.3e-15  Score=138.46  Aligned_cols=169  Identities=13%  Similarity=0.084  Sum_probs=132.5

Q ss_pred             CCchhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q 045564           51 GGRTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS  128 (296)
Q Consensus        51 ~~~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~  128 (296)
                      +.+|.+..+..... . ...........++.+++|.|..+.+++.+++.....++.++.|+++|| +||||++.++.++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~~   83 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSIF   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHH
Confidence            34555554444444 2 222233333445668999999999999999999999999999999999 79999999999888


Q ss_pred             HHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHH
Q 045564          129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFI  208 (296)
Q Consensus       129 ~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~  208 (296)
                      .++.++.....                       +...+++.|++.|++.+...+....+..|.+++ ++++...+++..
T Consensus        84 ~~~~~~~~~~~-----------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  139 (394)
T PRK11652         84 ILGTLVALFAH-----------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG-TQLRHANSLLNM  139 (394)
T ss_pred             HHHHHHHHHHc-----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH-HHHHHHHHHHHH
Confidence            88776655432                       346788889999999888778888888898874 467788888888


Q ss_pred             HHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Q 045564          209 LTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAG  244 (296)
Q Consensus       209 ~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~  244 (296)
                      +..+|..++|.+++++.+..|||+.|++.++..++.
T Consensus       140 ~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~  175 (394)
T PRK11652        140 GILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGV  175 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            999999999999999988889999999877655443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.66  E-value=7e-15  Score=135.58  Aligned_cols=155  Identities=8%  Similarity=-0.040  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCC
Q 045564           72 ANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDI  151 (296)
Q Consensus        72 ~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~  151 (296)
                      ..++.|. .+++.+..+.+++.+++.++..++.++.|+++|| +||||++.++.++..++.+++.+....+         
T Consensus        20 ~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~---------   88 (365)
T TIGR00900        20 VALPLYV-LAGTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVLPFVALLG---------   88 (365)
T ss_pred             HHHHHHH-HHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHcC---------
Confidence            3445555 4689999999999999999999999999999999 7999999999988877776665543110         


Q ss_pred             CCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 045564          152 GLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWR  231 (296)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~  231 (296)
                               ..+.+.++++|++.+++.+...+...++++|.+|++ +|++.+++++.+.++|..++|.+++++.+..||+
T Consensus        89 ---------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~  158 (365)
T TIGR00900        89 ---------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE-QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIK  158 (365)
T ss_pred             ---------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence                     014567888999999999999999999999999954 7899999999999999999999999999889999


Q ss_pred             hhHHHHHHHHHHHHHH
Q 045564          232 LGSGLNIAANLAGVVI  247 (296)
Q Consensus       232 ~~F~i~~~~~~~~~~~  247 (296)
                      +.|++.++..+++.+.
T Consensus       159 ~~~~~~~~~~~~~~~~  174 (365)
T TIGR00900       159 WAIWVDAVGFAISALL  174 (365)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999887765554443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.66  E-value=3.2e-15  Score=138.44  Aligned_cols=151  Identities=11%  Similarity=0.027  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCC
Q 045564           72 ANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDI  151 (296)
Q Consensus        72 ~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~  151 (296)
                      ....+++.+++|.+..+.+++.+++.++..++.++.|+++|| +|||+++.++.++..++.++++++.            
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~------------   80 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFAG------------   80 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHHc------------
Confidence            344456888999999999999999999999999999999999 7999999999998888877766542            


Q ss_pred             CCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 045564          152 GLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWR  231 (296)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~  231 (296)
                                 +...++++|++.|++.+...+...+++.|.+|+ ++|++.++++....++|..++|.+.+++.+..+|+
T Consensus        81 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  148 (399)
T TIGR00893        81 -----------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA-SERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQ  148 (399)
T ss_pred             -----------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH-HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCch
Confidence                       356788999999999999999999999999984 47899999999999999999999999998889999


Q ss_pred             hhHHHHHHHHHHHHHH
Q 045564          232 LGSGLNIAANLAGVVI  247 (296)
Q Consensus       232 ~~F~i~~~~~~~~~~~  247 (296)
                      +.|++.++..++..++
T Consensus       149 ~~~~~~~~~~~~~~~~  164 (399)
T TIGR00893       149 WAFIIEGVLGIIWGVL  164 (399)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999887765554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.65  E-value=8.5e-15  Score=138.51  Aligned_cols=150  Identities=13%  Similarity=0.047  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRC  149 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c  149 (296)
                      ...+..+.+.+++|++..+.+++.+.+.++..++.+..|+++|| +|||+++..+.+....+.+ .....          
T Consensus         9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~-~~~~~----------   76 (368)
T TIGR00903         9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAG-RLLDP----------   76 (368)
T ss_pred             HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHH-HHHHh----------
Confidence            33455567788999999999999999999999999999999999 7999887655544443322 11111          


Q ss_pred             CCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 045564          150 DIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLS  229 (296)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~g  229 (296)
                                  .+...++++|++.|+|.+.. .+.....+|.+|+ ++|++..+++..+.++|..+++++++++.+.+|
T Consensus        77 ------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~-~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g  142 (368)
T TIGR00903        77 ------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIRE-ERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG  142 (368)
T ss_pred             ------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence                        13567899999999999864 4555556899984 579999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHH
Q 045564          230 WRLGSGLNIAANLAGV  245 (296)
Q Consensus       230 w~~~F~i~~~~~~~~~  245 (296)
                      ||+.|.+.++..++..
T Consensus       143 Wr~~f~~~~~l~~~~~  158 (368)
T TIGR00903       143 LQLLIIPIAAVAAAGI  158 (368)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999998666544433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.65  E-value=6.6e-15  Score=136.11  Aligned_cols=168  Identities=15%  Similarity=0.076  Sum_probs=134.3

Q ss_pred             chhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHH
Q 045564           53 RTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLL  130 (296)
Q Consensus        53 ~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~i  130 (296)
                      |+.+...+...+ . ..|. ...+.+++.+++|++..+.+++.+++.++..++.++.|+++|| +|||+++.++.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~   80 (377)
T TIGR00890         3 WYVLVGTVIMCFTSGYVYT-WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGL   80 (377)
T ss_pred             EEEeHHHHHHHHHhhHHhh-hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHH
Confidence            444444444444 3 4443 3455678889999999999999999999999999999999999 7999999999999999


Q ss_pred             HHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHH
Q 045564          131 GTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILT  210 (296)
Q Consensus       131 g~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~  210 (296)
                      +.+..+++.                       +...++++|++.|++.+...+.......+.+| + +|+...+++..+.
T Consensus        81 ~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~  135 (377)
T TIGR00890        81 GFTFYAIAD-----------------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-D-KRGLASGIIIGGY  135 (377)
T ss_pred             HHHHHHHHH-----------------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-c-ccHHHHHHHHHhc
Confidence            887766543                       45678889999999999888878888888887 3 5888999988888


Q ss_pred             HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Q 045564          211 YASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       211 ~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~  247 (296)
                      ++|..+++.+.+.+.+..|||+.|++.++..++..+.
T Consensus       136 ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  172 (377)
T TIGR00890       136 GLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVL  172 (377)
T ss_pred             chhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            8998887777777777789999999988765554433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.65  E-value=9.5e-15  Score=141.24  Aligned_cols=151  Identities=8%  Similarity=-0.003  Sum_probs=120.1

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCch
Q 045564           83 HITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKV  162 (296)
Q Consensus        83 g~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~  162 (296)
                      +.+..+.+++.+++.++..++++++|+++|| +||||++.++.+++.++.+..+++.+ ....         . ..++..
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~-~~~~---------~-~~~~~~  118 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEF-GFTS---------I-GPDNTG  118 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhcc-cccc---------c-cccchh
Confidence            8888999999999999999999999999999 79999999999999888877665421 1000         0 001112


Q ss_pred             hhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh--------ccccchhhH
Q 045564          163 QFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE--------DNLSWRLGS  234 (296)
Q Consensus       163 ~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~--------~~~gw~~~F  234 (296)
                      ....++++|++.|++.|+..+...++++|.+|+ ++|+...+++..+..+|..+++.++..+.        +..|||+.|
T Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f  197 (479)
T PRK10077        119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA-HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMF  197 (479)
T ss_pred             HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHH
Confidence            345678999999999999999999999999994 47899999988888999988887665443        356999999


Q ss_pred             HHHHHHHHHHHH
Q 045564          235 GLNIAANLAGVV  246 (296)
Q Consensus       235 ~i~~~~~~~~~~  246 (296)
                      ++.++..++..+
T Consensus       198 ~~~~~~~~~~~~  209 (479)
T PRK10077        198 ASEAIPALLFLM  209 (479)
T ss_pred             HHHHHHHHHHHH
Confidence            988776555443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.65  E-value=2.2e-14  Score=137.81  Aligned_cols=159  Identities=15%  Similarity=0.146  Sum_probs=116.3

Q ss_pred             hHHHHHHHHHHHhC---CChhHHHHHH---HHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccC
Q 045564           70 WVANLMVYMIQEFH---ITSINSALIS---NIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDS  143 (296)
Q Consensus        70 ~~~~l~~yl~~~lg---~s~~~a~~i~---~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~  143 (296)
                      ....+..++.++++   .+..+.+.+.   +...++..++.+++|+++|| +||||++.++.+++.++.++.+++.   .
T Consensus        40 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~---~  115 (432)
T PRK10406         40 VYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCMMCFGSLVIACLP---G  115 (432)
T ss_pred             HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHhhcC---C
Confidence            44566668888874   4555433333   33444455899999999999 7999999999999999888776542   2


Q ss_pred             CCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 045564          144 LRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVY  223 (296)
Q Consensus       144 ~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~  223 (296)
                      +..            -.......+++.|++.|++.|+..+...++++|.+|++ +|+...++.+.+.+.|..+++.+...
T Consensus       116 ~~~------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~-~rg~~~~~~~~~~~~G~~~~~~~~~~  182 (432)
T PRK10406        116 YET------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEG-RKGFYASFQYVTLIGGQLLALLVVVV  182 (432)
T ss_pred             chh------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC-cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            100            00012346888999999999999999999999999954 68888888888888888888766554


Q ss_pred             hh--------ccccchhhHHHHHHHHHHHH
Q 045564          224 IE--------DNLSWRLGSGLNIAANLAGV  245 (296)
Q Consensus       224 l~--------~~~gw~~~F~i~~~~~~~~~  245 (296)
                      +.        ..+|||+.|++.++..++.+
T Consensus       183 ~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~  212 (432)
T PRK10406        183 LQQTLEDAELREWGWRIPFALGAVLAVVAL  212 (432)
T ss_pred             HHHhCCHHHHhccchHHHHHHHHHHHHHHH
Confidence            43        25799999998777555443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.64  E-value=1.4e-14  Score=139.45  Aligned_cols=147  Identities=11%  Similarity=0.074  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCC
Q 045564           72 ANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDI  151 (296)
Q Consensus        72 ~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~  151 (296)
                      ..++ .+.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.++++...            
T Consensus        44 ~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~------------  109 (434)
T PRK11663         44 AAMP-EMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILFGFSS------------  109 (434)
T ss_pred             HhhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHHHHHh------------
Confidence            3344 4456799999999999999999999999999999999 7999999999999888877665442            


Q ss_pred             CCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 045564          152 GLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWR  231 (296)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~  231 (296)
                                 +...+++.|++.+++.|...+...+++.|.+|+ ++|+...++++.+.++|..++|.+.+++.+.+|||
T Consensus       110 -----------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~-~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~  177 (434)
T PRK11663        110 -----------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR-TERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR  177 (434)
T ss_pred             -----------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence                       345677788899999888888899999999984 47899999999999999999999999999889999


Q ss_pred             hhHHHHHHHHHHH
Q 045564          232 LGSGLNIAANLAG  244 (296)
Q Consensus       232 ~~F~i~~~~~~~~  244 (296)
                      +.|++.++..++.
T Consensus       178 ~~f~~~~i~~~~~  190 (434)
T PRK11663        178 YGMMIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999887754433

>PRK03699 putative transporter; Provisional

Probab=99.64  E-value=2.8e-14  Score=135.36  Aligned_cols=171  Identities=9%  Similarity=-0.034  Sum_probs=132.5

Q ss_pred             CCchhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q 045564           51 GGRTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS  128 (296)
Q Consensus        51 ~~~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~  128 (296)
                      +|+|..+..++..+ . ........+...+.+++|+|..+.+++.+.+.++..++.+++|+++|| +||||++.++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~~   82 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFALM   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Confidence            35555554444444 3 222223333344668899999999999999999999999999999999 79999999999888


Q ss_pred             HHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHH
Q 045564          129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFI  208 (296)
Q Consensus       129 ~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~  208 (296)
                      .++.+++.+..                       +...+++.|++.|++.|...+...+.+.|.+|++ +|+...+..+.
T Consensus        83 ~i~~~l~~~~~-----------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~-~r~~~~~~~~~  138 (394)
T PRK03699         83 ILAVAGLMFSH-----------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK-QRGSRLLFTDS  138 (394)
T ss_pred             HHHHHHHHHcc-----------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc-hHHHHHHHHHH
Confidence            88777665432                       3467788899999999988888899999999854 68888888777


Q ss_pred             HHHHHHHHHHHHHHhhhc-cccchhhHHHHHHHHHHHHH
Q 045564          209 LTYASTVISSAAFVYIED-NLSWRLGSGLNIAANLAGVV  246 (296)
Q Consensus       209 ~~~iG~~i~p~v~~~l~~-~~gw~~~F~i~~~~~~~~~~  246 (296)
                      ..++|+.++|.+.+++.. ..|||+.|.+.++..++..+
T Consensus       139 ~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~  177 (394)
T PRK03699        139 FFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFI  177 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            888999999999888754 57999999987775554443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.63  E-value=1.9e-14  Score=136.68  Aligned_cols=146  Identities=11%  Similarity=-0.024  Sum_probs=123.4

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCc
Q 045564           77 YMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLC  156 (296)
Q Consensus        77 yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~  156 (296)
                      .+.+++|.+..+.++..+.+.++..++.++.|+++|| +||||++.++.++..++.+....+.                 
T Consensus        38 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~-----------------   99 (406)
T PRK15402         38 AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVAFFILTCLAILLAQ-----------------   99 (406)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHc-----------------
Confidence            4568899999999999999999999999999999999 7999999999988888776655432                 


Q ss_pred             CCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHH
Q 045564          157 KAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGL  236 (296)
Q Consensus       157 ~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i  236 (296)
                            +...+++.|++.|++.+...+...+.+.|.+|++ +|.+..++.+....+|..++|.+++++.+..+|++.|++
T Consensus       100 ------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~  172 (406)
T PRK15402        100 ------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA-DAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL  172 (406)
T ss_pred             ------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence                  3456788899999999988888899999999854 677788887777788999999999999888899999998


Q ss_pred             HHHHHHHHHHH
Q 045564          237 NIAANLAGVVI  247 (296)
Q Consensus       237 ~~~~~~~~~~~  247 (296)
                      .+++.++..+.
T Consensus       173 ~~~~~~~~~~~  183 (406)
T PRK15402        173 FAALAALSFFG  183 (406)
T ss_pred             HHHHHHHHHHH
Confidence            87766655543

>PRK11043 putative transporter; Provisional

Probab=99.63  E-value=3.7e-14  Score=134.33  Aligned_cols=158  Identities=11%  Similarity=0.047  Sum_probs=128.1

Q ss_pred             hHHHhHHHHHHH--HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccC
Q 045564           66 LGEGWVANLMVY--MIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDS  143 (296)
Q Consensus        66 ~~y~~~~~l~~y--l~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~  143 (296)
                      ++++...++|.+  +.+++|.+..+.+++.+++.++..++.++.|+++|| +|||+++.++.++..++.++..+..    
T Consensus        18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~----   92 (401)
T PRK11043         18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWVE----   92 (401)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHhc----
Confidence            344433444433  678999999999999999999999999999999999 7999999999888887776655432    


Q ss_pred             CCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 045564          144 LRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVY  223 (296)
Q Consensus       144 ~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~  223 (296)
                                         +...+++.|++.|++.+...+...+++.|.+|++ ++...++......++|..++|.++++
T Consensus        93 -------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~i~~~  152 (401)
T PRK11043         93 -------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ-KANRVFATIMPLVALSPALAPLLGAW  152 (401)
T ss_pred             -------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               3466788899999998887788888899999844 57777888777888999999999999


Q ss_pred             hhccccchhhHHHHHHHHHHHHHHH
Q 045564          224 IEDNLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       224 l~~~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      +.+.+|||+.|++..+..++..+..
T Consensus       153 l~~~~g~~~~~~~~~~~~~~~~~~~  177 (401)
T PRK11043        153 LLNHFGWQAIFATLFAITLLLILPT  177 (401)
T ss_pred             HHhcCChHHHHHHHHHHHHHHHHHH
Confidence            9998999999998877665554433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.63  E-value=2.5e-14  Score=135.95  Aligned_cols=152  Identities=13%  Similarity=0.157  Sum_probs=128.0

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .++... ...+.+.+++|.|..+.+++.+.+.++..++.++.|+++|| +|||+++..+..+..++.++.+++.      
T Consensus        24 ~~~~~~-~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a~------   95 (393)
T PRK09705         24 LLTSVG-PLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELYP------   95 (393)
T ss_pred             hhhccc-hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHCc------
Confidence            444444 44446778999999999999999999999999999999999 7999999999999999998887653      


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                       +...++++|++.|+|.+...+..+..+.+.+| + +|+...+.+..+.++|..+++.+++++.
T Consensus        96 -----------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~-~~~~~~g~~~~~~~~g~~~g~~~~~~l~  156 (393)
T PRK09705         96 -----------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-Q-RTPLVMGLWSAALMGGGGLGAAITPWLV  156 (393)
T ss_pred             -----------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-c-cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             24567889999999999999999999999997 3 5788999988889999999999999988


Q ss_pred             ccc-cchhhHHHHHHHHHHH
Q 045564          226 DNL-SWRLGSGLNIAANLAG  244 (296)
Q Consensus       226 ~~~-gw~~~F~i~~~~~~~~  244 (296)
                      +.. +||+.+.+.++..++.
T Consensus       157 ~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        157 QHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             HhcCCHHHHHHHHHHHHHHH
Confidence            775 8998877655543333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.63  E-value=3.9e-14  Score=133.79  Aligned_cols=148  Identities=10%  Similarity=0.089  Sum_probs=125.6

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCc
Q 045564           75 MVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLS  154 (296)
Q Consensus        75 ~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~  154 (296)
                      .+.+.+++|.+..+.++..+++..+..++.++.|+++|| +||||.+.++.++..++.+++....               
T Consensus        26 lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~~~~~~~---------------   89 (392)
T PRK10473         26 LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASLLCSLAE---------------   89 (392)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHHHHHHhC---------------
Confidence            345567899999999999999999999999999999999 7999999999988888777655432               


Q ss_pred             CcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhH
Q 045564          155 LCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGS  234 (296)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F  234 (296)
                              +...++++|++.|++.+...+...+++.|.+|+ ++|++..++++...++|..++|.+++++.+..||++.|
T Consensus        90 --------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~  160 (392)
T PRK10473         90 --------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD-RRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLF  160 (392)
T ss_pred             --------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHH
Confidence                    245677889999999998888899999999984 47899999999999999999999999988888999999


Q ss_pred             HHHHHHHHHHHHH
Q 045564          235 GLNIAANLAGVVI  247 (296)
Q Consensus       235 ~i~~~~~~~~~~~  247 (296)
                      ++.+++.++..++
T Consensus       161 ~~~~~~~~i~~~~  173 (392)
T PRK10473        161 YTMAAMGILVLLL  173 (392)
T ss_pred             HHHHHHHHHHHHH
Confidence            9887765554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.61  E-value=4.9e-14  Score=131.05  Aligned_cols=146  Identities=8%  Similarity=0.024  Sum_probs=116.2

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ..+.....++.++.+++|++..+.+++.+++.++..++.+++|+++|| +|||+++.++.++..++.+++.+..      
T Consensus        16 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~~~~~~~------   88 (366)
T TIGR00886        16 VWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPCLWAGLAV------   88 (366)
T ss_pred             HHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHh------
Confidence            444445556667999999999999999999999999999999999999 7999999999999988877765442      


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                      .+...++++|++.|++.+. .+...++++|.+|+ ++|+...+++....++|..+++.+.+.+.
T Consensus        89 ----------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  150 (366)
T TIGR00886        89 ----------------QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPK-KIQGTALGLAAGWGNMGGGVAQFVMPPII  150 (366)
T ss_pred             ----------------hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCH-hhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence                            0346678889999998664 45567889999984 46888998888777788777777666554


Q ss_pred             c----------cccchhhHHH
Q 045564          226 D----------NLSWRLGSGL  236 (296)
Q Consensus       226 ~----------~~gw~~~F~i  236 (296)
                      .          ..+||+.|++
T Consensus       151 ~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       151 GSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HHHHhcccccccccccchhHH
Confidence            3          2489999944

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.61  E-value=6.2e-14  Score=137.07  Aligned_cols=164  Identities=13%  Similarity=0.108  Sum_probs=118.4

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhH-HHH-----HHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhc
Q 045564           66 LGEGWVANLMVYMIQEFHITSIN-SAL-----ISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTA  139 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~-a~~-----i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~  139 (296)
                      ..+++..+...++.++++.+... ..+     +.++..++..++++++|+++|| +|||+++.++.+++.++.++++++.
T Consensus        30 ~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~i~~~~~a~~~  108 (490)
T PRK10642         30 FDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDK-YGRQKILAITIVIMSISTFCIGLIP  108 (490)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHhcc
Confidence            33445556666888888643322 111     2466677888999999999999 7999999999999999988877653


Q ss_pred             cccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHH
Q 045564          140 TFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSA  219 (296)
Q Consensus       140 ~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~  219 (296)
                         .+..            -.......+++.|++.|+|.|+..+...++++|.+|++ +|+...++...+.++|..+|+.
T Consensus       109 ---~~~~------------~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~-~Rg~~~~~~~~~~~~G~~lg~~  172 (490)
T PRK10642        109 ---SYAT------------IGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDR-KRGFMGSWLDFGSIAGFVLGAG  172 (490)
T ss_pred             ---cHHH------------HHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC-CCcHHHHHHHHHHHHHHHHHHH
Confidence               2100            00001124788999999999999999999999999954 6888888888777788877776


Q ss_pred             HHHhhh--------ccccchhhHHHHHHHHHHHHH
Q 045564          220 AFVYIE--------DNLSWRLGSGLNIAANLAGVV  246 (296)
Q Consensus       220 v~~~l~--------~~~gw~~~F~i~~~~~~~~~~  246 (296)
                      +...+.        ..+|||+.|++.++..+++++
T Consensus       173 ~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~  207 (490)
T PRK10642        173 VVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLY  207 (490)
T ss_pred             HHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            554432        257999999997765544443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.61  E-value=5.3e-14  Score=128.46  Aligned_cols=157  Identities=18%  Similarity=0.183  Sum_probs=133.8

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ..+.....++.|. +++|.+..+.+++.+....+..++.++.|+++|| +||||.+.++.++..++.+.+.+..      
T Consensus        14 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~~~~~~------   85 (352)
T cd06174          14 DRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLLLAFAS------   85 (352)
T ss_pred             hhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHHHHHhc------
Confidence            4444445555555 5679999999999999999999999999999999 7999999999999998887766542      


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                       +...+++++++.|++.+...+...++..|.+|+ ++|++.+++.+...++|..++|.+.+++.
T Consensus        86 -----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  147 (352)
T cd06174          86 -----------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP-KERGRALGLFSAGFGLGALLGPLLGGLLA  147 (352)
T ss_pred             -----------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCc-cchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                             346788899999999999999999999999995 47899999999999999999999999999


Q ss_pred             ccccchhhHHHHHHHHHHHHHHH
Q 045564          226 DNLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       226 ~~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      +..+|++.|++.++..++..+..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~  170 (352)
T cd06174         148 ESLGWRWLFLILAILGLLLALLL  170 (352)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHH
Confidence            98899999999887666655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.61  E-value=3.2e-14  Score=133.11  Aligned_cols=151  Identities=11%  Similarity=0.076  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCC
Q 045564           72 ANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDI  151 (296)
Q Consensus        72 ~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~  151 (296)
                      ..++.+. +++|++..+.+.+.+++.++..++.+++|+++|| +|||+++.++.++..++.+.+....            
T Consensus        12 p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~------------   77 (377)
T PRK11102         12 PALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALAQ------------   77 (377)
T ss_pred             ccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHHc------------
Confidence            3444444 6799999999999999999999999999999999 7999999999998888877765432            


Q ss_pred             CCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 045564          152 GLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWR  231 (296)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~  231 (296)
                                 +...+++.+++.|++.+...+...+++.|.+|+ ++|++.+++.+...++|..++|.+++++.+..||+
T Consensus        78 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  145 (377)
T PRK11102         78 -----------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPK-EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWH  145 (377)
T ss_pred             -----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH
Confidence                       245678889999999999999999999999984 47899999999999999999999999999888999


Q ss_pred             hhHHHHHHHHHHHHHHH
Q 045564          232 LGSGLNIAANLAGVVIF  248 (296)
Q Consensus       232 ~~F~i~~~~~~~~~~~~  248 (296)
                      +.|++.++..++..+..
T Consensus       146 ~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102        146 AIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99998877665554443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.60  E-value=3.8e-14  Score=137.45  Aligned_cols=147  Identities=18%  Similarity=0.115  Sum_probs=120.7

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcC
Q 045564           76 VYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSL  155 (296)
Q Consensus        76 ~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~  155 (296)
                      ..+.+++|.+..+.+++.+.+.....++.+++|+++|| +|||++++.+.++..++.++++++.                
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~----------------  105 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS----------------  105 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence            45568999999999999999999999999999999999 7999999999988888777665542                


Q ss_pred             cCCCCchhhHHHH-HHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhH
Q 045564          156 CKAPSKVQFAVLY-SGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGS  234 (296)
Q Consensus       156 ~~~~~~~~~~~l~-~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F  234 (296)
                             +...++ ..|++.|++.+...+...+.+.+.++ + +|++..++.+.+.++|..++|.+.+++.+.+|||+.|
T Consensus       106 -------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~-~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f  176 (455)
T TIGR00892       106 -------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-R-RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSF  176 (455)
T ss_pred             -------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-h-hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHH
Confidence                   223444 34678899888766666777888886 4 6899999999999999999999999999989999999


Q ss_pred             HHHHHHHHHHHHHH
Q 045564          235 GLNIAANLAGVVIF  248 (296)
Q Consensus       235 ~i~~~~~~~~~~~~  248 (296)
                      ++.+++.++..+..
T Consensus       177 ~~~~~~~~~~~v~~  190 (455)
T TIGR00892       177 LILGGLLLHCCVCG  190 (455)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99888766555443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.60  E-value=1.1e-13  Score=130.68  Aligned_cols=155  Identities=14%  Similarity=0.022  Sum_probs=123.5

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhH-----HHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhcc
Q 045564           66 LGEGWVANLMVYMIQEFHITSIN-----SALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTAT  140 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~-----a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~  140 (296)
                      ++......++.|++ ++|.+..+     .+.+.+++.+...++.++.|+++|| +|||+++.++.++..++.+++.... 
T Consensus        29 ~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~-  105 (408)
T PRK09874         29 AFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSALGMGIVMVLMGLAQ-  105 (408)
T ss_pred             HHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHHHHHHHHHHHHHHh-
Confidence            44555666777774 58888654     3678888999999999999999999 7999999999888888776654432 


Q ss_pred             ccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 045564          141 FDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAA  220 (296)
Q Consensus       141 ~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v  220 (296)
                                            +...+++.|++.+++.+ ..+...+.+.|.+|+ ++|+...++++.+.++|..++|.+
T Consensus       106 ----------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~  161 (408)
T PRK09874        106 ----------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPR-NKSGWALGTLSTGGVSGALLGPLA  161 (408)
T ss_pred             ----------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCH-hhhhHHHHHHHHHHHHHHHHHHHH
Confidence                                  34677888999998755 456777788899884 468889999889999999999999


Q ss_pred             HHhhhccccchhhHHHHHHHHHHHHHH
Q 045564          221 FVYIEDNLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       221 ~~~l~~~~gw~~~F~i~~~~~~~~~~~  247 (296)
                      .+++.+..+|++.|++.++..++..+.
T Consensus       162 ~~~l~~~~~~~~~~~~~~~~~~~~~~~  188 (408)
T PRK09874        162 GGLLADSYGLRPVFFITASVLFLCFLV  188 (408)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            999988889999999988766555443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.60  E-value=1.1e-13  Score=135.09  Aligned_cols=149  Identities=7%  Similarity=-0.061  Sum_probs=115.0

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCC
Q 045564           73 NLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIG  152 (296)
Q Consensus        73 ~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~  152 (296)
                      ....++.+++|++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.++++++.             
T Consensus        57 ~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~-------------  122 (476)
T PLN00028         57 PLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTAPAVFCMSLVS-------------  122 (476)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHhc-------------
Confidence            44457788999999999999999999999999999999999 7999999999888888776655442             


Q ss_pred             CcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh----c--
Q 045564          153 LSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE----D--  226 (296)
Q Consensus       153 ~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~----~--  226 (296)
                                +...+++.|++.|++.+... ....+++|.+|++ +|+.+.++.+...++|+.+++.+.+.+.    +  
T Consensus       123 ----------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~-~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~  190 (476)
T PLN00028        123 ----------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGK-IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG  190 (476)
T ss_pred             ----------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChh-heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                      23567778999998887654 3456789999844 7899999887777788777766555442    2  


Q ss_pred             ---cccchhhHHHHHHHHHHHHHH
Q 045564          227 ---NLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       227 ---~~gw~~~F~i~~~~~~~~~~~  247 (296)
                         ..|||+.|++.+++.++..++
T Consensus       191 ~~~~~gWr~~f~i~g~l~l~~~l~  214 (476)
T PLN00028        191 APSFTAWRIAFFVPGLLHIIMGIL  214 (476)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHH
Confidence               248999999988765544433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.59  E-value=9.6e-14  Score=136.07  Aligned_cols=155  Identities=15%  Similarity=0.122  Sum_probs=122.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCch
Q 045564           83 HITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKV  162 (296)
Q Consensus        83 g~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~  162 (296)
                      +.+..+.+++.+.+.++..++.++.|+++|| +|||+++.++.++..++.++.+++.   ..              ....
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~v~~~~~~~~~---~~--------------~~~~  113 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELIIMIIATVASGLSP---GS--------------SPKS  113 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcc---Cc--------------ccch
Confidence            3455677889999999999999999999999 7999999999999998887666542   10              0001


Q ss_pred             hhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhc----------------
Q 045564          163 QFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIED----------------  226 (296)
Q Consensus       163 ~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~----------------  226 (296)
                      +...++++|++.|++.|+..+..+.+++|.+|++ .|+++.+++++...+|..+++.+..++..                
T Consensus       114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~-~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  192 (502)
T TIGR00887       114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKK-WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCT  192 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence            2467899999999999999999999999999954 78999999999999999998887765431                


Q ss_pred             -------cccchhhHHHHHHHHHHHHHH--HHhCCCchh
Q 045564          227 -------NLSWRLGSGLNIAANLAGVVI--FLSGKHFYF  256 (296)
Q Consensus       227 -------~~gw~~~F~i~~~~~~~~~~~--~~~~~~~~~  256 (296)
                             .++||+.|.+.++..++.++.  +++++|||.
T Consensus       193 ~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l  231 (502)
T TIGR00887       193 GSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYT  231 (502)
T ss_pred             ccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence                   247999998877755444433  467888884

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.58  E-value=1.5e-14  Score=133.84  Aligned_cols=151  Identities=11%  Similarity=0.074  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCC
Q 045564           72 ANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDI  151 (296)
Q Consensus        72 ~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~  151 (296)
                      ....+++.+++|++..+.+++.+++.++..++.+++|+++|| +|||+++.++.++..++.+++.++.            
T Consensus        15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~------------   81 (379)
T TIGR00881        15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFST------------   81 (379)
T ss_pred             hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHhh------------
Confidence            344457888999999999999999999999999999999999 7999999999999988887766542            


Q ss_pred             CCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHH-HHHHhhhccccc
Q 045564          152 GLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISS-AAFVYIEDNLSW  230 (296)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p-~v~~~l~~~~gw  230 (296)
                                 +...+++.|++.|++.+...+...+++.|.+|++ +|+..+++...+.++|..++| .+.+.+.+..+|
T Consensus        82 -----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  149 (379)
T TIGR00881        82 -----------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS-ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSW  149 (379)
T ss_pred             -----------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh-hheeeEeehhccchhHHHHHHHHHHHHHHhcCCc
Confidence                       3467888999999999999999999999999844 688888888899999999999 567777777899


Q ss_pred             hhhHHHHHHHHHHHHHH
Q 045564          231 RLGSGLNIAANLAGVVI  247 (296)
Q Consensus       231 ~~~F~i~~~~~~~~~~~  247 (296)
                      ++.|++.+++.++..++
T Consensus       150 ~~~~~~~~~~~~~~~~~  166 (379)
T TIGR00881       150 HWVFIVPGIIAIIVSLI  166 (379)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            99999887755544433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.58  E-value=1.1e-14  Score=141.26  Aligned_cols=150  Identities=11%  Similarity=-0.049  Sum_probs=122.4

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCC
Q 045564           74 LMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGL  153 (296)
Q Consensus        74 l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~  153 (296)
                      ....+.+++|++..+.+++.+.+..+..++.+++|+++|| +|||+++.++.++..++.+.++... . ..         
T Consensus        51 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~-~-~~---------  118 (467)
T PRK09556         51 AQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSAICMLGFGASL-G-SG---------  118 (467)
T ss_pred             hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHHHHHHHHHHHH-h-cc---------
Confidence            3456778999999999999999999999999999999999 7999999998888877666555421 0 00         


Q ss_pred             cCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccc---cc
Q 045564          154 SLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNL---SW  230 (296)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~---gw  230 (296)
                             ..+...+++.|++.|++.+...+....+++|.+|++ +|+..++++..+.++|+.+++.+..++.+..   +|
T Consensus       119 -------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~  190 (467)
T PRK09556        119 -------SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR-KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHV  190 (467)
T ss_pred             -------cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc-ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcc
Confidence                   024677888999999999998999999999999954 6899999988899999999998888776543   68


Q ss_pred             hhhHHHHHHHHHH
Q 045564          231 RLGSGLNIAANLA  243 (296)
Q Consensus       231 ~~~F~i~~~~~~~  243 (296)
                      +..|.+.++..++
T Consensus       191 ~~~f~~~g~~~~~  203 (467)
T PRK09556        191 IGMFIFPSIIALI  203 (467)
T ss_pred             hhHHHHHHHHHHH
Confidence            8888886665444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.57  E-value=2.2e-13  Score=128.56  Aligned_cols=154  Identities=12%  Similarity=0.067  Sum_probs=124.7

Q ss_pred             CchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q 045564           52 GRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS  128 (296)
Q Consensus        52 ~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~  128 (296)
                      +.|.++.+++..+  . ........++.|+. ++|.|..+++++.+.+.++..++.++.|+++|| +||||++.++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~   81 (381)
T PRK03633          4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIF   81 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHH
Confidence            3455666666665  3 44445566666665 689999999999999999999999999999999 79999999999999


Q ss_pred             HHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHH
Q 045564          129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFI  208 (296)
Q Consensus       129 ~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~  208 (296)
                      .++.++..++.                       +...++++|++.|++.+...+...+.+.+..+++ +|++.++++..
T Consensus        82 ~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  137 (381)
T PRK03633         82 AAGCAGLGLMV-----------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR-NRGRLLAAYMM  137 (381)
T ss_pred             HHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHH
Confidence            88877665442                       3467888999999999988888777778888744 68999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccch
Q 045564          209 LTYASTVISSAAFVYIEDNLSWR  231 (296)
Q Consensus       209 ~~~iG~~i~p~v~~~l~~~~gw~  231 (296)
                      +.++|..+||.+.+++.+...|.
T Consensus       138 ~~~~g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633        138 VYYLGTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             HHHHHHHHHHHHHhcccccccch
Confidence            99999999999999987754333

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.57  E-value=1.6e-13  Score=127.88  Aligned_cols=158  Identities=11%  Similarity=-0.009  Sum_probs=119.7

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHH-HHHHHHHHHHHHhhccccCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWIS-SFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~-~~l~~ig~~~la~~~~~p~~  144 (296)
                      +.......++.|+.+++|.|..+.+++.+.+.+...+..++.|+++|| +||||.+++. .++..++.++.+.+.     
T Consensus        12 ~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~-----   85 (375)
T TIGR00899        12 AGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLFAWNR-----   85 (375)
T ss_pred             HHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHHHhcc-----
Confidence            445556778889999999999999999999999999999999999999 7999876654 444444444443321     


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhH--HHHHHHHHHHHHHHHHHHHH
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIF--FNWFFILTYASTVISSAAFV  222 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~--f~~~y~~~~iG~~i~p~v~~  222 (296)
                                        +...+++.+++.+.+.+...|...++..|..|++ +|...  .++.....++|..++|.+++
T Consensus        86 ------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ig~~~~~  146 (375)
T TIGR00899        86 ------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRT-GREAVMFSSVMRAQISLAWVIGPPLAF  146 (375)
T ss_pred             ------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc-chhhHHHHHHHHHHHhHHHHHhhhHHH
Confidence                              3455667777777777777787778888877643 34432  46667778899999999999


Q ss_pred             hhhccccchhhHHHHHHHHHHHHHHH
Q 045564          223 YIEDNLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       223 ~l~~~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      ++.+..|||+.|++.+++.++..++.
T Consensus       147 ~l~~~~~~~~~f~~~~~~~~~~~~~~  172 (375)
T TIGR00899       147 WLALGFGFTVMFLTAALAFVLCGVLV  172 (375)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            99988999999999888665554443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00897 2A0118 polyol permease family

Probab=99.57  E-value=2.7e-13  Score=128.97  Aligned_cols=170  Identities=11%  Similarity=0.072  Sum_probs=132.5

Q ss_pred             ccCCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHH
Q 045564           49 KRGGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISS  125 (296)
Q Consensus        49 ~~~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~  125 (296)
                      +-+.||.+....+..+  . +.+....+++.|+ +++|.+..+.+++.+.+.++..++.+++|+++|| +||||++..+.
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~   85 (402)
T TIGR00897         8 KIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGL   85 (402)
T ss_pred             HcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHH
Confidence            4567777777766666  3 4444556677777 6789999999999999999999999999999999 79999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHH
Q 045564          126 FISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNW  205 (296)
Q Consensus       126 ~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~  205 (296)
                      ++..++.+++......                   ..+...+++.|++.|+|.+...+...+.+.+.+|+ ++|+++.++
T Consensus        86 ~~~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~-~~~g~~~g~  145 (402)
T TIGR00897        86 LLWCVGHAAFIVFGLG-------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ-DNLSSAVGW  145 (402)
T ss_pred             HHHHHHHHHHHHHhcc-------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH-HHHHHHHHH
Confidence            9888876554322100                   01345677889999999887777777888888884 478999999


Q ss_pred             HHHHHHHHH-HHHHHHHHhhhccccchhhHHHHHHH
Q 045564          206 FFILTYAST-VISSAAFVYIEDNLSWRLGSGLNIAA  240 (296)
Q Consensus       206 ~y~~~~iG~-~i~p~v~~~l~~~~gw~~~F~i~~~~  240 (296)
                      ++.+.++|. .++|.+++++.+..||+..+|.....
T Consensus       146 ~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~  181 (402)
T TIGR00897       146 FWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF  181 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            999999996 58999999998888977666655443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.56  E-value=5.5e-13  Score=126.50  Aligned_cols=159  Identities=11%  Similarity=0.069  Sum_probs=120.8

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .++....+++.|+++++|++..+++.+.+...+...++.+++|+++|| +|||+.+..+.+...+....+...       
T Consensus       231 ~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~-------  302 (393)
T PRK15011        231 TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAGVCFYAGMLMA-------  302 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHH-------
Confidence            444455678889999999999999888888778888899999999999 799998877665544433222111       


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                      .+...+++.+++.+++.|...+..++...|.+|+  +|++..++++...++|..++|.++|++.
T Consensus       303 ----------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~--~~g~~~~~~~~~~~lg~~~g~~l~G~i~  364 (393)
T PRK15011        303 ----------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG--QAGSATTLYTNTSRVGWIIAGSLAGIVA  364 (393)
T ss_pred             ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            1223455566677777666666677778898884  4788888888888999999999999999


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHh
Q 045564          226 DNLSWRLGSGLNIAANLAGVVIFLS  250 (296)
Q Consensus       226 ~~~gw~~~F~i~~~~~~~~~~~~~~  250 (296)
                      +..||+..|++..++.++++++.+.
T Consensus       365 ~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        365 EIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            9889999999888877776665543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.55  E-value=1.9e-13  Score=132.21  Aligned_cols=152  Identities=7%  Similarity=-0.037  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCC
Q 045564           72 ANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDI  151 (296)
Q Consensus        72 ~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~  151 (296)
                      ....+|+.++ |++..+.+++.+.+.++..++.+++|+++|| +|||+++.++.++..++.+.+++..   ..       
T Consensus        49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~---~~-------  116 (452)
T PRK11273         49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVP---WA-------  116 (452)
T ss_pred             HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhh---cc-------
Confidence            3444577777 9999999999999999999999999999999 7999999999998888777665432   00       


Q ss_pred             CCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHH-HHHHHHHhhhccccc
Q 045564          152 GLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTV-ISSAAFVYIEDNLSW  230 (296)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~-i~p~v~~~l~~~~gw  230 (296)
                               ..+...+++.|++.|++.|...+.....+.|++|+ ++|+.+.++++.+.++|+. ++|++...+....||
T Consensus       117 ---------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw  186 (452)
T PRK11273        117 ---------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-KERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDW  186 (452)
T ss_pred             ---------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccH
Confidence                     01345677889999999998888888889999984 4689999999999999864 455543334334599


Q ss_pred             hhhHHHHHHHHHHHH
Q 045564          231 RLGSGLNIAANLAGV  245 (296)
Q Consensus       231 ~~~F~i~~~~~~~~~  245 (296)
                      |+.|++.++..++..
T Consensus       187 ~~~f~i~~~~~~~~~  201 (452)
T PRK11273        187 HAALYMPAFAAILVA  201 (452)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999877555433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.55  E-value=5.7e-13  Score=127.75  Aligned_cols=158  Identities=16%  Similarity=0.119  Sum_probs=129.1

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ..+++...+.+.+++++|++..+.+++.+.+..+..++.++.|++.|| +|||+++.++.++..+|.+++..+...    
T Consensus        17 ~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~~l~~~~~~~----   91 (410)
T TIGR00885        17 FANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGAFLFWPAAEI----   91 (410)
T ss_pred             HHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHhh----
Confidence            344555566678899999999999999999999999999999999999 799999999999999988765433210    


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                      .+...+++++++.|+|.|...+..++++.+..|++ +|++..++.+...++|..++|.+.+.+.
T Consensus        92 ----------------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        92 ----------------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPES-TATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             ----------------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            13567888999999999999999999999988844 5778888888889999999999888774


Q ss_pred             cc--------------------------ccchhhHHHHHHHHHHHH
Q 045564          226 DN--------------------------LSWRLGSGLNIAANLAGV  245 (296)
Q Consensus       226 ~~--------------------------~gw~~~F~i~~~~~~~~~  245 (296)
                      ..                          .+||++|.+.+++.++..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~  200 (410)
T TIGR00885       155 LSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA  200 (410)
T ss_pred             hcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21                          369999988776554433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.55  E-value=1.3e-13  Score=132.83  Aligned_cols=152  Identities=7%  Similarity=-0.026  Sum_probs=122.1

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCC
Q 045564           73 NLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIG  152 (296)
Q Consensus        73 ~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~  152 (296)
                      ...+++.+ +|++..+.+++.+++.++..++.++.|+++|| +|||+.+.++.++..++.+++....   ..        
T Consensus        48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~---~~--------  114 (438)
T TIGR00712        48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVP---WA--------  114 (438)
T ss_pred             hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhccc---cc--------
Confidence            34456665 59999999999999999999999999999999 7999999999888888776654331   11        


Q ss_pred             CcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh-ccccch
Q 045564          153 LSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE-DNLSWR  231 (296)
Q Consensus       153 ~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~-~~~gw~  231 (296)
                              ..+...+++.|++.+++.|...+.....+.|.+|++ +|+.++++++.+.++|+.++|.+.+++. +..+||
T Consensus       115 --------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~-~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~  185 (438)
T TIGR00712       115 --------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS-ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWH  185 (438)
T ss_pred             --------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc-cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhH
Confidence                    013456677889999999988888889999999844 6899999999999999999988777644 446999


Q ss_pred             hhHHHHHHHHHHHHH
Q 045564          232 LGSGLNIAANLAGVV  246 (296)
Q Consensus       232 ~~F~i~~~~~~~~~~  246 (296)
                      +.|++.+++.++..+
T Consensus       186 ~~f~~~~~~~~i~~~  200 (438)
T TIGR00712       186 AALYFPAICAIIVAL  200 (438)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998876655443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10133 L-fucose transporter; Provisional

Probab=99.55  E-value=7.9e-13  Score=127.82  Aligned_cols=153  Identities=14%  Similarity=0.120  Sum_probs=116.6

Q ss_pred             CCchhHHHHHHHHH--HhHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q 045564           51 GGRTALLSRTVTCL--TLGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS  128 (296)
Q Consensus        51 ~~~~~~~~l~~~~~--~~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~  128 (296)
                      ++...+..+..+.+  .........+.+.+.+++|++..+.++..+.+.++..++.++.|+++|| +||||++.++.+++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~~~  101 (438)
T PRK10133         23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLY  101 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHH
Confidence            34444444444444  2223334444556689999999999999999999999999999999999 79999999999999


Q ss_pred             HHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHH
Q 045564          129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFI  208 (296)
Q Consensus       129 ~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~  208 (296)
                      .++.+++......                    .+...++++|++.|+|.|...+..++++.|..| +++|....+.+..
T Consensus       102 ~~~~~l~~~~~~a--------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~-~~~~~~~~s~~~~  160 (438)
T PRK10133        102 ALGAALFWPAAEI--------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGP-ESSGHFRLNLAQT  160 (438)
T ss_pred             HHHHHHHHHHHhc--------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC-hhhHHHHHHHHHH
Confidence            9988765322211                    145678899999999999999999999998765 3355556777777


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 045564          209 LTYASTVISSAAFVYIE  225 (296)
Q Consensus       209 ~~~iG~~i~p~v~~~l~  225 (296)
                      ...+|..+||.+++.+.
T Consensus       161 ~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        161 FNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88889999988876543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.55  E-value=4.7e-13  Score=128.69  Aligned_cols=154  Identities=12%  Similarity=0.067  Sum_probs=111.8

Q ss_pred             hHHHHHHHHHHHhCCChhHHHH-HHHHHHHH-----HHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccC
Q 045564           70 WVANLMVYMIQEFHITSINSAL-ISNIVNGF-----VNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDS  143 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~-i~~~~~~~-----~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~  143 (296)
                      ....+.+.+.++++.+..+.+. ..+.....     ..++.++.|+++|| +||||.++++.+++.++.++++++..+..
T Consensus        33 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~l~~~~~~~~~  111 (434)
T PRK15075         33 LFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIVTLSIMASGTLLIAFVPGYAT  111 (434)
T ss_pred             HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            3455666888899988766443 33322221     23578899999999 79999999999999998887765431100


Q ss_pred             CCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 045564          144 LRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVY  223 (296)
Q Consensus       144 ~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~  223 (296)
                      +.               ......++++|++.|++.|...+....+++|.+|+ ++|+...+++....++|..+++.+++.
T Consensus       112 ~~---------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~-~~rg~~~~~~~~~~~~g~~~g~~~g~~  175 (434)
T PRK15075        112 IG---------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP-GRKGFYTSWQSASQQVAVVFAALLGYL  175 (434)
T ss_pred             HH---------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc-ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00               00012468889999999999999899999999994 478999998888878887777777666


Q ss_pred             h--------hccccchhhHHHHHHH
Q 045564          224 I--------EDNLSWRLGSGLNIAA  240 (296)
Q Consensus       224 l--------~~~~gw~~~F~i~~~~  240 (296)
                      +        .+.+|||+.|++..+.
T Consensus       176 l~~~~~~~~~~~~gWr~~f~~~~~~  200 (434)
T PRK15075        176 LNQWLSPAQMAEWGWRIPFLIGCLI  200 (434)
T ss_pred             HHHhCCHHHHhccchHHHHHHHHHH
Confidence            5        2467999999986543

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.55  E-value=5.1e-13  Score=128.93  Aligned_cols=149  Identities=11%  Similarity=0.008  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHhCCChhH-HHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccC
Q 045564           72 ANLMVYMIQEFHITSIN-SALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCD  150 (296)
Q Consensus        72 ~~l~~yl~~~lg~s~~~-a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~  150 (296)
                      +.+..|+.+++|++.++ .+.+.+++..++.++.+++|+++|| +|-||++.++.+.+.+..+++.++.           
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~-----------  113 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGT-----------  113 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            44556899999999999 9999999999999999999999999 7999999999999998887777653           


Q ss_pred             CCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 045564          151 IGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSW  230 (296)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw  230 (296)
                                  +...+.+.|++.|++.|... ....++...+| +++|+++.+++..+.++|.++++++++++. .+||
T Consensus       114 ------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP-~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gW  178 (511)
T TIGR00806       114 ------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVP-PSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGW  178 (511)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCc
Confidence                        35678899999999999988 99999999999 457999999999999999999999999954 6799


Q ss_pred             hhhHHH---HHHHHHHHHHH
Q 045564          231 RLGSGL---NIAANLAGVVI  247 (296)
Q Consensus       231 ~~~F~i---~~~~~~~~~~~  247 (296)
                      ++-+.+   ......+++++
T Consensus       179 r~y~~Ln~Isl~s~~~a~~~  198 (511)
T TIGR00806       179 ISYSTLNIISLVFMTFSVFL  198 (511)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            876554   44444444443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.54  E-value=6.9e-13  Score=129.69  Aligned_cols=183  Identities=9%  Similarity=0.059  Sum_probs=126.6

Q ss_pred             CCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH
Q 045564           51 GGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFI  127 (296)
Q Consensus        51 ~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l  127 (296)
                      ++++.+...+...+  . .+|++..++++|+++.+|++..++........++..++.+++|+++|| +|||+++.++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~  325 (490)
T PRK10642        247 KHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVA  325 (490)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHH
Confidence            34555544444333  5 788888999999999999998888888888888899999999999999 7999998888765


Q ss_pred             HHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHH
Q 045564          128 SLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFF  207 (296)
Q Consensus       128 ~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y  207 (296)
                      ..++.+.+......                    .+...+++++++.+++.+...+...++..+.+|++ .|+++.++.|
T Consensus       326 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~-~Rg~~~g~~~  384 (490)
T PRK10642        326 LFVLAIPAFILINS--------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTH-IRYSALAAAF  384 (490)
T ss_pred             HHHHHHHHHHHHhC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-cchHHHHHHH
Confidence            44333221111100                    12345667777877777766777788888999954 7899999844


Q ss_pred             HHHHHHHHHHHHHHHhhhccc-cchhhHHHHHHHHHHHHHH--HHhCCCch
Q 045564          208 ILTYASTVISSAAFVYIEDNL-SWRLGSGLNIAANLAGVVI--FLSGKHFY  255 (296)
Q Consensus       208 ~~~~iG~~i~p~v~~~l~~~~-gw~~~F~i~~~~~~~~~~~--~~~~~~~~  255 (296)
                      ....+++.++|.+.+++.+.. +|+.++++..+..+++++.  ++.++|++
T Consensus       385 ~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~  435 (490)
T PRK10642        385 NISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANR  435 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCC
Confidence            445666788999999998765 4666665544443333333  33455544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.53  E-value=5.6e-13  Score=126.78  Aligned_cols=140  Identities=14%  Similarity=0.083  Sum_probs=117.8

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCc
Q 045564           77 YMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLC  156 (296)
Q Consensus        77 yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~  156 (296)
                      .+.+++|.+..+.+++.+.+.+...++.+++|+++|| +||||++.++.++..++.+.+....                 
T Consensus        28 ~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~~~~~~~~~-----------------   89 (393)
T PRK11195         28 ALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLGCLLMLFGI-----------------   89 (393)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHHHHHHHHHH-----------------
Confidence            3467899999999999999999999999999999999 7999999999999888766554321                 


Q ss_pred             CCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHH
Q 045564          157 KAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGL  236 (296)
Q Consensus       157 ~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i  236 (296)
                            +   .++.|++.|++.+...|...+++.|.+|++ +|+++.++.....++|..+||.++|++.+. .|+..+.+
T Consensus        90 ------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~-~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i  158 (393)
T PRK11195         90 ------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGE-KLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAV  158 (393)
T ss_pred             ------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence                  1   267789999999999999999999999954 789999999999999999999999999874 47777776


Q ss_pred             HHHHHHHHH
Q 045564          237 NIAANLAGV  245 (296)
Q Consensus       237 ~~~~~~~~~  245 (296)
                      .+...+++.
T Consensus       159 ~~~~~~~~~  167 (393)
T PRK11195        159 CALIYLLAA  167 (393)
T ss_pred             HHHHHHHHH
Confidence            665444443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.53  E-value=1.3e-12  Score=124.04  Aligned_cols=157  Identities=12%  Similarity=0.115  Sum_probs=107.3

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhhcchHHHHH-HHHHHHHHHHHHHHhhccccC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNG-FVNLFPVLGAIIADSFLGSFQVIW-ISSFISLLGTILLDSTATFDS  143 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~-~~~~~~l~~G~laDr~iGR~~~i~-i~~~l~~ig~~~la~~~~~p~  143 (296)
                      +.......++.|+.+++|.|.++.+.+.+.... ...++++++|+ +|| +||||.++ .+.++..++..+.+++.    
T Consensus        30 ~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~----  103 (393)
T PRK15011         30 AGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLLGVLACTLFAWNR----  103 (393)
T ss_pred             HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHHHHHHHHHHHHhh----
Confidence            555567788999999999999999998766544 55666666677 999 79998755 44454445544443321    


Q ss_pred             CCCCccCCCCcCcCCCCchhhHHHHHH-HHHHHHhhchhhhhhhhhhhccCCCccchh-hHHHHHHHHHHHHHHHHHHHH
Q 045564          144 LRPQRCDIGLSLCKAPSKVQFAVLYSG-IALACLGLGGLRFTLATMGANQFEIPQHQG-IFFNWFFILTYASTVISSAAF  221 (296)
Q Consensus       144 ~~~~~c~~~~~~~~~~~~~~~~~l~~~-~~l~gig~g~~~~~~~~~~ad~f~~~~~r~-~~f~~~y~~~~iG~~i~p~v~  221 (296)
                                         +...+++. +++.+.+ +...|...++..|..+++++.. ...++...+.++|..++|.++
T Consensus       104 -------------------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~  163 (393)
T PRK15011        104 -------------------NYFVLLFVGVFLSSFG-STANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLA  163 (393)
T ss_pred             -------------------HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHH
Confidence                               23344333 4444443 4567777787788666332222 223567788899999999999


Q ss_pred             HhhhccccchhhHHHHHHHHHHHHHHH
Q 045564          222 VYIEDNLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       222 ~~l~~~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      +++.+..|||+.|++.++..++..+..
T Consensus       164 ~~l~~~~gw~~~f~~~~~~~~~~~~~~  190 (393)
T PRK15011        164 YALAMGFSFTVMYLSAAVAFIVCGVMV  190 (393)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            999988999999998877655544443

>TIGR00896 CynX cyanate transporter

Probab=99.53  E-value=2.7e-13  Score=126.40  Aligned_cols=152  Identities=14%  Similarity=0.221  Sum_probs=122.9

Q ss_pred             HHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 045564           67 GEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRP  146 (296)
Q Consensus        67 ~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~  146 (296)
                      ++.........+.+++|++..+.+++.+++.++..++.++.|+++|| +||||++.++.++..++.+.. ..   +    
T Consensus        15 ~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~---~----   85 (355)
T TIGR00896        15 ALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SA---P----   85 (355)
T ss_pred             ccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hh---c----
Confidence            33344455556788999999999999999999999999999999999 799999999988877766544 21   1    


Q ss_pred             CccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045564          147 QRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIED  226 (296)
Q Consensus       147 ~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~  226 (296)
                                      +...+++.|++.|++.+...+..+....|.+| + +|++..++++.+.++|..+++.+.+++.+
T Consensus        86 ----------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~g~~i~~~~~~~l~~  147 (355)
T TIGR00896        86 ----------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-Q-RVGLMTGLYSMALMGGAALAAAATVPLAQ  147 (355)
T ss_pred             ----------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-c-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            23567788999999999888888888899887 3 58889999999999999999999998876


Q ss_pred             cc--cchhhHHHHHHHHHHHH
Q 045564          227 NL--SWRLGSGLNIAANLAGV  245 (296)
Q Consensus       227 ~~--gw~~~F~i~~~~~~~~~  245 (296)
                      ..  +||+.|.+.++..++..
T Consensus       148 ~~~~~w~~~f~~~~~~~~~~~  168 (355)
T TIGR00896       148 HSGGHWQQALAWWALPALLAL  168 (355)
T ss_pred             hhhhhHHHHHHHHHHHHHHHH
Confidence            64  39988887666444433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.53  E-value=1.8e-12  Score=125.83  Aligned_cols=174  Identities=11%  Similarity=0.004  Sum_probs=122.0

Q ss_pred             hhHHHHHHHHH-H-hHHHhHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHH
Q 045564           54 TALLSRTVTCL-T-LGEGWVANLMVYMIQ-EFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLL  130 (296)
Q Consensus        54 ~~~~~l~~~~~-~-~~y~~~~~l~~yl~~-~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~i  130 (296)
                      |.+........ . ..-...+.+...+.+ ++|+|.+|.+++.++..+...++.+..|++.|| +|.|+++.++.++..+
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHH
Confidence            55544444333 2 222234444556554 799999999999999999999999999999999 7999999999999888


Q ss_pred             HHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHH
Q 045564          131 GTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILT  210 (296)
Q Consensus       131 g~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~  210 (296)
                      ..+.++++.  +..                ..+...+++.|++.|++ |...+.....+++.||+ ++|+.+.+++....
T Consensus       113 ~~~~~~~a~--~~~----------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~-~~rG~A~Gi~~g~G  172 (462)
T PRK15034        113 PCVWLGIAV--QNP----------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPK-AKQGSALGINGGLG  172 (462)
T ss_pred             HHHHHHHHH--ccc----------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH-hHhHHHHHHHHHHH
Confidence            887776541  000                02457889999999998 66788888999999994 47899999986666


Q ss_pred             HHHHHHHHHHHHhhh-----c-------------cccchhhHHHHHHHHHHHHHHH
Q 045564          211 YASTVISSAAFVYIE-----D-------------NLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       211 ~iG~~i~p~v~~~l~-----~-------------~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      |+|..+++++...+.     +             ..+|+..+++..+..++..++.
T Consensus       173 ~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~  228 (462)
T PRK15034        173 NLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAA  228 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            777665554433221     2             2346666666666544444333

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.52  E-value=6.6e-14  Score=141.29  Aligned_cols=198  Identities=14%  Similarity=0.102  Sum_probs=144.6

Q ss_pred             CCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH
Q 045564           51 GGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFI  127 (296)
Q Consensus        51 ~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l  127 (296)
                      .++|.+++.+....  . .+.+......+-+.++++++..+.+++.+.+.++..++.++.|+++|| +||||.+.++.++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll  107 (633)
T TIGR00805        29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAI  107 (633)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHH
Confidence            34554433333233  3 445556666678889999999999999999999999999999999999 7999999999999


Q ss_pred             HHHHHHHHHhhccccC-C---------------CCCccCCCC----------cCcCCCC--chhhHHHHHHHHHHHHhhc
Q 045564          128 SLLGTILLDSTATFDS-L---------------RPQRCDIGL----------SLCKAPS--KVQFAVLYSGIALACLGLG  179 (296)
Q Consensus       128 ~~ig~~~la~~~~~p~-~---------------~~~~c~~~~----------~~~~~~~--~~~~~~l~~~~~l~gig~g  179 (296)
                      +.+|.++.+++.++.. +               ...-|....          ..|....  ......++++|++.|+|.+
T Consensus       108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~  187 (633)
T TIGR00805       108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT  187 (633)
T ss_pred             HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence            9999999887642110 0               001121000          0111111  1124567899999999999


Q ss_pred             hhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccc----------------------cchhhHHHH
Q 045564          180 GLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNL----------------------SWRLGSGLN  237 (296)
Q Consensus       180 ~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~----------------------gw~~~F~i~  237 (296)
                      ...+...+++.|.+|++ +|+..+++++.+..+|..+|+++++++.+.+                      +|+.+|++.
T Consensus       188 ~~~~~~~~~i~d~~~~~-~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~  266 (633)
T TIGR00805       188 PIFPLGISYIDDFAKSK-NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLIC  266 (633)
T ss_pred             cchhcCchhhhccCCcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHH
Confidence            99999999999999954 7899999999999999999999999887543                      277778887


Q ss_pred             HHHHHHHHHHHHh
Q 045564          238 IAANLAGVVIFLS  250 (296)
Q Consensus       238 ~~~~~~~~~~~~~  250 (296)
                      +++.++..+.++.
T Consensus       267 g~l~~l~~v~l~~  279 (633)
T TIGR00805       267 GGVALLTSIPFFF  279 (633)
T ss_pred             HHHHHHHHHHHHh
Confidence            7765554444433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.52  E-value=1.2e-13  Score=133.65  Aligned_cols=143  Identities=12%  Similarity=-0.037  Sum_probs=122.8

Q ss_pred             HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCC
Q 045564           81 EFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPS  160 (296)
Q Consensus        81 ~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~  160 (296)
                      +++++..+.+.+.+.+..+..++.+++|+++|| +|||+++.++.++..++.++......                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            688999999999999999999999999999999 79999999999888877666543320                    


Q ss_pred             chhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccc-cchhhHHHHHH
Q 045564          161 KVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNL-SWRLGSGLNIA  239 (296)
Q Consensus       161 ~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~-gw~~~F~i~~~  239 (296)
                       .+...+++.|++.|++.+...+....+++|.+|+ ++|++..++++.+.++|..++|.+.+++.+.. |||+.|++.++
T Consensus       129 -~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~  206 (465)
T TIGR00894       129 -GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPP-KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGI  206 (465)
T ss_pred             -cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhH
Confidence             1235688899999999999999999999999984 47899999999999999999999999999884 99999999887


Q ss_pred             HHHHHHH
Q 045564          240 ANLAGVV  246 (296)
Q Consensus       240 ~~~~~~~  246 (296)
                      ..++..+
T Consensus       207 ~~~~~~~  213 (465)
T TIGR00894       207 VGCAWSL  213 (465)
T ss_pred             HHHHHHH
Confidence            6554443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.51  E-value=2.4e-13  Score=129.62  Aligned_cols=155  Identities=15%  Similarity=0.024  Sum_probs=124.2

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCC
Q 045564           73 NLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIG  152 (296)
Q Consensus        73 ~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~  152 (296)
                      .++.+ .++++.+..+.+++.+.+.+...++.++.|+++|| +|||+.+.++.++..++.+.+++..+.+.         
T Consensus        39 ~~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~---------  107 (417)
T PRK10489         39 AVPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGFIGLALNAFLPE---------  107 (417)
T ss_pred             HHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHHHHHHHHHHcCC---------
Confidence            34444 46678899999999999999999999999999999 79999999888877776665543221100         


Q ss_pred             CcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchh
Q 045564          153 LSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRL  232 (296)
Q Consensus       153 ~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~  232 (296)
                               .+...+++.+++.|++.+...+...+.+.|.+|+ ++|++..++.++..++|..+||.+++++.+..+|++
T Consensus       108 ---------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~  177 (417)
T PRK10489        108 ---------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR-ENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAW  177 (417)
T ss_pred             ---------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH-HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHH
Confidence                     1345677888999998888888888999999984 468888999889999999999999999988889999


Q ss_pred             hHHHHHHHHHHHHHHH
Q 045564          233 GSGLNIAANLAGVVIF  248 (296)
Q Consensus       233 ~F~i~~~~~~~~~~~~  248 (296)
                      .|++.++..++..+..
T Consensus       178 ~~~~~~~~~~~~~~~~  193 (417)
T PRK10489        178 NYGLAAAGTFITLLPL  193 (417)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9998877665555443

>PRK09952 shikimate transporter; Provisional

Probab=99.51  E-value=2.4e-12  Score=124.15  Aligned_cols=180  Identities=16%  Similarity=0.049  Sum_probs=126.2

Q ss_pred             CCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH
Q 045564           51 GGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFI  127 (296)
Q Consensus        51 ~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l  127 (296)
                      .+++.....+...+  . .+|...++++.|+++.+|++......+..+......++.+++|+++|| +||||++.++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~  325 (438)
T PRK09952        247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALI  325 (438)
T ss_pred             HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHH
Confidence            34554444443344  5 778888899999999999988776666666677778888999999999 7999998887766


Q ss_pred             HHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHH-H
Q 045564          128 SLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNW-F  206 (296)
Q Consensus       128 ~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~-~  206 (296)
                      ..++.+.+....  ..                 ......+++..++.+++.+...+..+++.+|.+|. +.|+++.++ +
T Consensus       326 ~~~~~~~~~~~~--~~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~-~~r~tg~g~~~  385 (438)
T PRK09952        326 GTLSAFPFFMAL--EA-----------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA-SYRYSGAGVGY  385 (438)
T ss_pred             HHHHHHHHHHHH--Hc-----------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc-chhHHHHhHHH
Confidence            554433222211  00                 01122334445566778787788889999999995 478888888 4


Q ss_pred             HHHHHHHHHHHHHHHHhhhccc--cchhhHHHHHHHHHHHHHHHHhC
Q 045564          207 FILTYASTVISSAAFVYIEDNL--SWRLGSGLNIAANLAGVVIFLSG  251 (296)
Q Consensus       207 y~~~~iG~~i~p~v~~~l~~~~--gw~~~F~i~~~~~~~~~~~~~~~  251 (296)
                      .++..+|+.++|.+.+++.+..  +|...+.+.+++.+++.+..+..
T Consensus       386 ~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        386 QVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            4555689999999999998744  47888877777766666554443

>PRK09952 shikimate transporter; Provisional

Probab=99.50  E-value=2.8e-12  Score=123.67  Aligned_cols=150  Identities=15%  Similarity=0.135  Sum_probs=108.7

Q ss_pred             HHHHHHh--CCChhHHHHHH-----HHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCc
Q 045564           76 VYMIQEF--HITSINSALIS-----NIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQR  148 (296)
Q Consensus        76 ~yl~~~l--g~s~~~a~~i~-----~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~  148 (296)
                      .+..+++  +.++.+ +.+.     ++..++..++.++.|+++|| +|||+++.++.+++.++.++++++.   .+..  
T Consensus        47 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~---~~~~--  119 (438)
T PRK09952         47 LVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRMLMLTVWMMGIATALIGLLP---SFST--  119 (438)
T ss_pred             HHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHhcCC---cHHH--
Confidence            3555555  666664 3332     23334566778888999999 7999999999999999888776653   1100  


Q ss_pred             cCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh---
Q 045564          149 CDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE---  225 (296)
Q Consensus       149 c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~---  225 (296)
                                ........+++.|++.|++.|+..+....++.|.+|++ +|+...+....+..+|..++..+..++.   
T Consensus       120 ----------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~-~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~  188 (438)
T PRK09952        120 ----------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKN-KKAFYSSGVQVGYGVGLLLSTGLVSLISMMT  188 (438)
T ss_pred             ----------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                      00001235778899999999999999999999999954 6788777778888888888877666654   


Q ss_pred             -----ccccchhhHHHHHHHHHH
Q 045564          226 -----DNLSWRLGSGLNIAANLA  243 (296)
Q Consensus       226 -----~~~gw~~~F~i~~~~~~~  243 (296)
                           +.+|||+.|++.++..++
T Consensus       189 ~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        189 TDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             CHHHhhccChHHHHHHHHHHHHH
Confidence                 257999999988775544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.50  E-value=1.2e-12  Score=121.04  Aligned_cols=152  Identities=12%  Similarity=0.094  Sum_probs=121.0

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRC  149 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c  149 (296)
                      ...+.+.|. +++|.+..+++.+.+...++..++.+++|+++|| +|||+.+.++.++..++.+++....   .      
T Consensus       224 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~---~------  292 (377)
T TIGR00890       224 LIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGMAAMLFIP---M------  292 (377)
T ss_pred             HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHcc---c------
Confidence            344555564 5689998888999999999999999999999999 7999999998888877766554321   1      


Q ss_pred             CCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 045564          150 DIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLS  229 (296)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~g  229 (296)
                                  .....+++..++.+++.+...+..+++..|.+|++ +|++.+++++...++|..++|.+.+++.+..|
T Consensus       293 ------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  359 (377)
T TIGR00890       293 ------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPA-NSAANYGFLYTAKAVAGIFGGLIASHALTEIG  359 (377)
T ss_pred             ------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhh-hhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence                        01123444556777777777778888999999844 78999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHH
Q 045564          230 WRLGSGLNIAANLAGV  245 (296)
Q Consensus       230 w~~~F~i~~~~~~~~~  245 (296)
                      |++.|.+.+++.++++
T Consensus       360 ~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       360 FEYTFIVTGAFALTSL  375 (377)
T ss_pred             hhhHHHHHHHHHHHhc
Confidence            9999998887666544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.50  E-value=5.2e-13  Score=132.67  Aligned_cols=158  Identities=15%  Similarity=0.091  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCC
Q 045564           72 ANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDI  151 (296)
Q Consensus        72 ~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~  151 (296)
                      +....++..++|-+ ....|+.+.+.+...++.++.|.+||. ||||..++.+.++..+|.++.+-+.            
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~------------  129 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQ------------  129 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCC------------
Confidence            45567888899875 555778888999999999999999999 7999999999999999999877542            


Q ss_pred             CCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 045564          152 GLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWR  231 (296)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~  231 (296)
                                 +...++++..+.|+|.|... .....++|+.|.+ .|..++.+.....-+...++|.++..+..+.+||
T Consensus       130 -----------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k-~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WR  196 (599)
T PF06609_consen  130 -----------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNK-WRGLGLAIASIPFIITTWISPLIAQLFAAHSGWR  196 (599)
T ss_pred             -----------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccc-hhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcc
Confidence                       45689999999999987665 4566689999954 6766666655554455556777777776667999


Q ss_pred             hhHHHHHHHHHHHHHHH--HhCCCchh
Q 045564          232 LGSGLNIAANLAGVVIF--LSGKHFYF  256 (296)
Q Consensus       232 ~~F~i~~~~~~~~~~~~--~~~~~~~~  256 (296)
                      |.|++..+...++++..  +...|++.
T Consensus       197 w~~~~~~i~~~i~~vl~~~fY~PP~~~  223 (599)
T PF06609_consen  197 WIFYIFIIWSGIALVLIFFFYFPPPRA  223 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence            99999988766665442  33444443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00898 2A0119 cation transport protein

Probab=99.50  E-value=3.9e-13  Score=131.24  Aligned_cols=151  Identities=13%  Similarity=0.189  Sum_probs=124.7

Q ss_pred             HHHHHhCCC---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCC
Q 045564           77 YMIQEFHIT---SINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGL  153 (296)
Q Consensus        77 yl~~~lg~s---~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~  153 (296)
                      -+.++++++   ..+.+++.+++.++..++.++.|+++|| +|||+++.++.++..++.++.+++.              
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~~--------------  178 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFSP--------------  178 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHcc--------------
Confidence            456789998   8899999999999999999999999999 7999999999998888777665442              


Q ss_pred             cCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhh
Q 045564          154 SLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLG  233 (296)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~  233 (296)
                               +...+++.|++.|++.++..+...+++.|.+|++ +|+...+++.++..+|.+++|.++..+.+   ||+.
T Consensus       179 ---------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~  245 (505)
T TIGR00898       179 ---------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK-QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWL  245 (505)
T ss_pred             ---------cHHHHHHHHHHHHhhccchHHHHHHHhheecChh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHH
Confidence                     3567889999999999999999999999999844 68888888888888999999988766653   9999


Q ss_pred             HHHHHHHHHHHHHHH--HhCCCch
Q 045564          234 SGLNIAANLAGVVIF--LSGKHFY  255 (296)
Q Consensus       234 F~i~~~~~~~~~~~~--~~~~~~~  255 (296)
                      |++.++..++..+..  +.++|++
T Consensus       246 ~~~~~i~~~~~~~~~~~~~esp~~  269 (505)
T TIGR00898       246 QLAVSLPTFLFFLLSWFVPESPRW  269 (505)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChHH
Confidence            998877655544433  3445555

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.50  E-value=2.3e-12  Score=125.19  Aligned_cols=161  Identities=10%  Similarity=-0.000  Sum_probs=118.1

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .+++...++|.|+++.+|++..+++.......++..++.+++|+++|| +|||+.+.....+..++..++.+..  .   
T Consensus       273 ~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~~~~~~~~~~--~---  346 (467)
T PRK09556        273 VRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALIIFTLGVYQH--A---  346 (467)
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHHHHHHHHh--c---
Confidence            666778899999999999999999999999999999999999999999 7999877665444433322222111  0   


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHH-HHHHHHHHHHhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYA-STVISSAAFVYI  224 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~i-G~~i~p~v~~~l  224 (296)
                                      .+....++.+++.|+...+..........|.+|+ +.|+++.++.+...++ |+.++|.+.|++
T Consensus       347 ----------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~-~~~g~a~gi~~~~g~l~g~~~~~~~~G~i  409 (467)
T PRK09556        347 ----------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK-KAIGVANGIKGTFAYLFGDSFAKVGLGMI  409 (467)
T ss_pred             ----------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHhHHHHhhhHHHH
Confidence                            1123344555566654333333344566799984 4789999998888886 778999999999


Q ss_pred             hc------------cccchhhHHHHHHHHHHHHHHHH
Q 045564          225 ED------------NLSWRLGSGLNIAANLAGVVIFL  249 (296)
Q Consensus       225 ~~------------~~gw~~~F~i~~~~~~~~~~~~~  249 (296)
                      .+            ..||+..|++..++.+++++..+
T Consensus       410 ~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        410 ADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             hcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            99            57899999988777777665543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.49  E-value=2e-12  Score=127.38  Aligned_cols=162  Identities=15%  Similarity=0.299  Sum_probs=127.4

Q ss_pred             HhHHHHHHHHHHHh-----CCCh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccc
Q 045564           69 GWVANLMVYMIQEF-----HITS--INSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATF  141 (296)
Q Consensus        69 ~~~~~l~~yl~~~l-----g~s~--~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~  141 (296)
                      +..+.+...+.+..     ..+.  .+.+++.+++.++..++.++.|+++|+ +|||++++++.+++.+|.++.+.+.  
T Consensus        64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a~--  140 (513)
T KOG0254|consen   64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALAP--  140 (513)
T ss_pred             ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhh--
Confidence            45555555555432     2222  344799999999999999999999999 7999999999999999999988763  


Q ss_pred             cCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 045564          142 DSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAF  221 (296)
Q Consensus       142 p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~  221 (296)
                                           +...++++|++.|+|.|+.....+.+++|.-|. +.|+...+.+....++|..++. +.
T Consensus       141 ---------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~-~~RG~l~~~~~l~~~~Gi~~~~-~~  197 (513)
T KOG0254|consen  141 ---------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPA-HIRGTLVSLYQLFITIGILLGY-CI  197 (513)
T ss_pred             ---------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCCh-hhhHHHHHHHHHHHHHHHHHHH-HH
Confidence                                 467899999999999999999999999999984 4799999999999999998884 45


Q ss_pred             Hhhhcc--ccchhhHHHHHHHHHHHH--HHHHhCCCchh
Q 045564          222 VYIEDN--LSWRLGSGLNIAANLAGV--VIFLSGKHFYF  256 (296)
Q Consensus       222 ~~l~~~--~gw~~~F~i~~~~~~~~~--~~~~~~~~~~~  256 (296)
                      ++..++  .+||..+++..+..++..  +.+.+++|+|.
T Consensus       198 ~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L  236 (513)
T KOG0254|consen  198 NYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWL  236 (513)
T ss_pred             hhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence            555444  489988887666433322  33455788886

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.49  E-value=4.6e-12  Score=118.02  Aligned_cols=156  Identities=12%  Similarity=0.081  Sum_probs=121.9

Q ss_pred             HHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 045564           68 EGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQ  147 (296)
Q Consensus        68 y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~  147 (296)
                      .....+++.|+.+++|.+..+++.+.....+....+.+++|+++|| +|||+++.++.++..++.+.+...         
T Consensus       216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~---------  285 (375)
T TIGR00899       216 ILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAAD---------  285 (375)
T ss_pred             HHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHH---------
Confidence            3345567889999999999999888877777778888999999999 799999888776655443332221         


Q ss_pred             ccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 045564          148 RCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDN  227 (296)
Q Consensus       148 ~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~  227 (296)
                                    .+.+.+++.+++.+++.|...+....+..|.+|+  +++++.++++...++|..++|.+.|++.+.
T Consensus       286 --------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~  349 (375)
T TIGR00899       286 --------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG--RAGAATTLYTNTGRVGWIIAGSVGGILAER  349 (375)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                          1234455566777888887778888888898884  356889999999999999999999999998


Q ss_pred             ccchhhHHHHHHHHHHHHHHHH
Q 045564          228 LSWRLGSGLNIAANLAGVVIFL  249 (296)
Q Consensus       228 ~gw~~~F~i~~~~~~~~~~~~~  249 (296)
                      .||+..|++.+++.+++.++..
T Consensus       350 ~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       350 WSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             ccchhHHHHHHHHHHHHHHHHh
Confidence            9999999998887777666543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.48  E-value=2.7e-13  Score=127.79  Aligned_cols=152  Identities=9%  Similarity=0.072  Sum_probs=132.7

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCC
Q 045564           73 NLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIG  152 (296)
Q Consensus        73 ~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~  152 (296)
                      ...+++.++.++|.+|.+.+.+.+.+.+.++-.+.|.++|| .+.|+.+.+++++..+..+++.++.             
T Consensus        50 ~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsai~nil~Gfs~-------------  115 (448)
T COG2271          50 LAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSAIVNILFGFSP-------------  115 (448)
T ss_pred             hccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHHHHHHHHhhhh-------------
Confidence            34568888999999999999999999999999999999999 7999999999999988777766543             


Q ss_pred             CcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHH--Hhhhccccc
Q 045564          153 LSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAF--VYIEDNLSW  230 (296)
Q Consensus       153 ~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~--~~l~~~~gw  230 (296)
                                ++..+.+..++.|...|.-.|++...++..|| +++|++..++++.+.|+|+.+.|++.  +++..+.+|
T Consensus       116 ----------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfs-r~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w  184 (448)
T COG2271         116 ----------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFS-RKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGW  184 (448)
T ss_pred             ----------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcC-ccccCceEEEehhhhhcccchHHHHHHHHHHHhccch
Confidence                      45677788889999999999999999999999 55799999999999999999999998  999988899


Q ss_pred             hhhHHHHHHHHHH-HHHHHH
Q 045564          231 RLGSGLNIAANLA-GVVIFL  249 (296)
Q Consensus       231 ~~~F~i~~~~~~~-~~~~~~  249 (296)
                      |.+|++++++.++ +++.+.
T Consensus       185 ~~~f~~pgiiaiival~~~~  204 (448)
T COG2271         185 RAAFYFPGIIAIIVALILLF  204 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            9999999985544 444443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.48  E-value=5.2e-12  Score=115.27  Aligned_cols=158  Identities=18%  Similarity=0.193  Sum_probs=135.3

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHH-HHHHHHHHHHHHHHHHHhhccccCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQ-VIWISSFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~-~i~i~~~l~~ig~~~la~~~~~p~~  144 (296)
                      .......+.+.|+.+.+|.+..+.+........+..++.++.|+++|| +|||+ .+.++.++..++.+.+....     
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~-----  263 (352)
T cd06174         190 GYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAALGLLLLALAP-----  263 (352)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHhc-----
Confidence            444456677788887789999999999999999999999999999999 79999 99999888888777665432     


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                                        +....++..++.+++.+...+...++..|..|+ +.|++.++.++...++|..++|.+.+++
T Consensus       264 ------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~i~g~l  324 (352)
T cd06174         264 ------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPP-EARGTASGLFNTFGSLGGALGPLLAGLL  324 (352)
T ss_pred             ------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              234567778899999999999999999999985 4789999999999999999999999999


Q ss_pred             hccccchhhHHHHHHHHHHHHHHH
Q 045564          225 EDNLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       225 ~~~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      .+..+|++.|.+.+++.+++.++.
T Consensus       325 ~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         325 LDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             hcccCcchHHHHHHHHHHHHHHHh
Confidence            988999999999988877766554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.47  E-value=9.9e-13  Score=129.32  Aligned_cols=150  Identities=14%  Similarity=0.049  Sum_probs=128.3

Q ss_pred             HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCC
Q 045564           79 IQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKA  158 (296)
Q Consensus        79 ~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~  158 (296)
                      .+..+.+........+++.++..+|+++.|++||| +|||++++++.++.+++.++.+++.                   
T Consensus       110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~-------------------  169 (521)
T KOG0255|consen  110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP-------------------  169 (521)
T ss_pred             hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC-------------------
Confidence            35667788888999999999999999999999999 8999999999999999887766653                   


Q ss_pred             CCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHH
Q 045564          159 PSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNI  238 (296)
Q Consensus       159 ~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~  238 (296)
                          +...+++.|++.|++.++...+...+++|.++++ .|+.+.++ ......++.++|.+++++..  +|||.+++..
T Consensus       170 ----~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~-~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~  241 (521)
T KOG0255|consen  170 ----NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK-QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIIS  241 (521)
T ss_pred             ----cHHHHHHHHHHHHhhccchhHHhHhhheeecCcc-hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence                4678999999999999999999999999999844 78888877 67777888899999999987  9999999988


Q ss_pred             HHHHHHHHH-HHh-CCCchh
Q 045564          239 AANLAGVVI-FLS-GKHFYF  256 (296)
Q Consensus       239 ~~~~~~~~~-~~~-~~~~~~  256 (296)
                      +..++.++. ++. +.|||+
T Consensus       242 ~~~~~~~~~~~l~~Es~rwl  261 (521)
T KOG0255|consen  242 IPSGLFLLLWFLPPESPRWL  261 (521)
T ss_pred             HHHHHHHHHHHccCcChHHH
Confidence            876655544 333 677886

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.46  E-value=1.7e-12  Score=120.75  Aligned_cols=166  Identities=13%  Similarity=0.027  Sum_probs=120.7

Q ss_pred             HHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHH
Q 045564           56 LLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGT  132 (296)
Q Consensus        56 ~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~  132 (296)
                      ........+  . .++....+++.|+++++|.+..+++.+.....+...++.+++|+++|| +|||+.+.++..+..+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~  299 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALLA  299 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHH
Confidence            444443343  5 666777889999999999999999999999999999999999999999 799998876655443322


Q ss_pred             HHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHH-HHHHHH
Q 045564          133 ILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNW-FFILTY  211 (296)
Q Consensus       133 ~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~-~y~~~~  211 (296)
                      +...... .+.                  .+...+++..++.+++.+...+...+++.|.+|++ .|++++++ +.++..
T Consensus       300 ~~~~~~~-~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~  359 (394)
T TIGR00883       300 VPLLMAL-LDS------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTE-VRYTGASLAYNLAGA  359 (394)
T ss_pred             HHHHHHH-hcC------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCcc-ceeeEeeehhHhHHH
Confidence            1111110 000                  12344555667778888888889999999999954 67777777 456667


Q ss_pred             HHHHHHHHHHHhhhcccc-chhhHHHHHHHHH
Q 045564          212 ASTVISSAAFVYIEDNLS-WRLGSGLNIAANL  242 (296)
Q Consensus       212 iG~~i~p~v~~~l~~~~g-w~~~F~i~~~~~~  242 (296)
                      +|..++|.+.|++.+..| |++.++...++.+
T Consensus       360 ~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       360 IFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             HHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            888899999999999888 8877666555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.46  E-value=4.5e-12  Score=129.62  Aligned_cols=132  Identities=14%  Similarity=0.061  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHH
Q 045564           92 ISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGI  171 (296)
Q Consensus        92 i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~  171 (296)
                      ...+..++..++.+++|+++|| +|||+++.++.++.+++.+++.+..                       +...+++.+
T Consensus       600 ~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~-----------------------s~~~ll~~~  655 (742)
T TIGR01299       600 VNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN-----------------------SESAMIALL  655 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc-----------------------cHHHHHHHH
Confidence            3455667888999999999999 7999999999888888776655432                       123445556


Q ss_pred             HHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHH
Q 045564          172 ALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFL  249 (296)
Q Consensus       172 ~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~  249 (296)
                      ++.+++.++..+...++++|++|++ .|++++++.+...++|+++||++++++.+. +...+|++.+++.+++.++.+
T Consensus       656 ~l~g~~~~~~~~~~~a~~aEl~Pt~-~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~  731 (742)
T TIGR01299       656 CLFGGLSIAAWNALDVLTVELYPSD-KRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL  731 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH
Confidence            6777777778888999999999955 799999999999999999999999988764 456778887776666555443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.45  E-value=1e-11  Score=118.02  Aligned_cols=163  Identities=12%  Similarity=0.068  Sum_probs=126.3

Q ss_pred             H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccC
Q 045564           65 T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDS  143 (296)
Q Consensus        65 ~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~  143 (296)
                      . .+++...+++.|+.+ .|.+..+++...+.+.++..++.++.|+++|| +|||+.+.++..+..++.+++...   |.
T Consensus       218 ~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~~~~~~~~---~~  292 (393)
T PRK09705        218 NGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVGFCGFIWL---PL  292 (393)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHc---cc
Confidence            5 777888899999975 89999999999999999999999999999999 799999988877777665544321   11


Q ss_pred             CCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 045564          144 LRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVY  223 (296)
Q Consensus       144 ~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~  223 (296)
                                         +.....  ..+.+++.+...+.......+.+++++.+++.+++.+...++++.++|.+.|+
T Consensus       293 -------------------~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~  351 (393)
T PRK09705        293 -------------------QLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGV  351 (393)
T ss_pred             -------------------hHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               111121  23457777777777777777888645578999999888999999999999999


Q ss_pred             hhcccc-chhhHHHHHHHHHHHHHHHHhCCC
Q 045564          224 IEDNLS-WRLGSGLNIAANLAGVVIFLSGKH  253 (296)
Q Consensus       224 l~~~~g-w~~~F~i~~~~~~~~~~~~~~~~~  253 (296)
                      +.+..| |...|.+.+++.+++.+..+...|
T Consensus       352 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        352 LRSISGNYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            999876 788888888777666655544444

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.45  E-value=1.6e-12  Score=103.08  Aligned_cols=132  Identities=15%  Similarity=0.147  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHH
Q 045564           94 NIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIAL  173 (296)
Q Consensus        94 ~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l  173 (296)
                      +.+..+..++.++.|+++|| +|||+.+.++..+..++.+.+....                       +...+++.+++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~   60 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALSS-----------------------NITVLIIARFL   60 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhc-----------------------cHHHHHHHHHH
Confidence            44566788889999999999 7999999999888887766554321                       23566777889


Q ss_pred             HHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHh
Q 045564          174 ACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLS  250 (296)
Q Consensus       174 ~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~  250 (296)
                      .+++.+...+...++..|.+|++ .|++..++.+...++|..++|.+.+++.+..+|++.|++..+..+++.+....
T Consensus        61 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (141)
T TIGR00880        61 QGFGAAFALVAGAALIADIYPPE-ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF  136 (141)
T ss_pred             HHHHHHHHHHhHHHHHHHHCChh-hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            99999988999999999999854 78999999999999999999999999998889999999888766665554433

>PRK03699 putative transporter; Provisional

Probab=99.45  E-value=7.4e-12  Score=118.71  Aligned_cols=156  Identities=10%  Similarity=0.015  Sum_probs=121.2

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .++++..++|.|+++.+|++..+++.+.+.+.++..++.+++|+++|| +|||+.+.....+..++..++....      
T Consensus       220 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~~~~------  292 (394)
T PRK03699        220 AQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALVLMYLFVNTD------  292 (394)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHcC------
Confidence            667778899999999999999999999999999999999999999999 7999998877766555443332211      


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                       +.....+..++.|++.+...+...+...+..|++  +....++.+.+.++|+.++|.+.|++.
T Consensus       293 -----------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~i~p~~~G~l~  353 (394)
T PRK03699        293 -----------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA--SPKLVNFILTCGTIGTMLTFVVTSPIV  353 (394)
T ss_pred             -----------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence                             1123344456677777777787777888877633  455677777888999999999999999


Q ss_pred             ccccchhhHHHHHHHHHHHHHH
Q 045564          226 DNLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       226 ~~~gw~~~F~i~~~~~~~~~~~  247 (296)
                      +..|++..|++..++.+++.+.
T Consensus       354 ~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        354 AHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HHhCchhhhhhhHHHHHHHHHH
Confidence            9899999998877766665443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.44  E-value=6e-12  Score=120.88  Aligned_cols=158  Identities=8%  Similarity=0.025  Sum_probs=120.7

Q ss_pred             hHHHHHHHHHHHhCCCh--------hHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccc
Q 045564           70 WVANLMVYMIQEFHITS--------INSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATF  141 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~--------~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~  141 (296)
                      ...+.+.|+++ .|.++        ...+...++..+...++.++.|+++|| +|||+++.++.++..++..++....  
T Consensus       227 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~~~v~~~l~~~~~--  302 (418)
T TIGR00889       227 TNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVAWALRFGFFAYGD--  302 (418)
T ss_pred             HHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcC--
Confidence            33556677754 45443        556788888888999999999999999 7999999999998887765554421  


Q ss_pred             cCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHH-HHHHHHHHHHHHH
Q 045564          142 DSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFF-ILTYASTVISSAA  220 (296)
Q Consensus       142 p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y-~~~~iG~~i~p~v  220 (296)
                      +.                 ......+++..++.+++.+...+....+++|.+|+ +.|++++++++ +...+|..+||++
T Consensus       303 ~~-----------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~-~~~g~~~g~~~~~~~~lg~~iGp~l  364 (418)
T TIGR00889       303 PE-----------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV-HIRASAQGLFTLMCNGFGSLLGYIL  364 (418)
T ss_pred             cc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            00                 01234566778889999888888889999999994 47899999986 5678999999999


Q ss_pred             HHhhhcc------ccchhhHHHHHHHHHHHHHHHH
Q 045564          221 FVYIEDN------LSWRLGSGLNIAANLAGVVIFL  249 (296)
Q Consensus       221 ~~~l~~~------~gw~~~F~i~~~~~~~~~~~~~  249 (296)
                      .|++.+.      +||+..|.+.+++.+++.+++.
T Consensus       365 ~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~  399 (418)
T TIGR00889       365 SGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFM  399 (418)
T ss_pred             HHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence            9999887      4699999988776655554443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.44  E-value=5.6e-12  Score=119.42  Aligned_cols=162  Identities=8%  Similarity=-0.032  Sum_probs=116.3

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      +......+++.|+++++|++..+.+.+.+++.+...++.++.|+++|| +||||.+..+.+...++...+......+...
T Consensus        17 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (396)
T TIGR00882        17 IMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVLFAPFFIYVFGPLLQ   95 (396)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            445566788999999999999999999999999999999999999999 7999999887766655433222111011000


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                     ......+++++++.+++.+...+....+..|.-+   +++..++......++|..++|.+++.+.
T Consensus        96 ---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~g~~~g~~~~g~l~  157 (396)
T TIGR00882        96 ---------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR---NSNFEYGKARMFGCVGWALCASIAGILF  157 (396)
T ss_pred             ---------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh---hcccccchhhhhcccHHHHHHHHHhhhh
Confidence                           0012234556677778777777777777666432   2234566667778999999999999886


Q ss_pred             ccccchhhHHHHHHHHHHHHHH
Q 045564          226 DNLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       226 ~~~gw~~~F~i~~~~~~~~~~~  247 (296)
                      + .+|++.|++.++..++..++
T Consensus       158 ~-~~~~~~f~~~~~~~~~~~~~  178 (396)
T TIGR00882       158 S-IDPQIVFWLGSGFALILMLL  178 (396)
T ss_pred             c-cCchHHHHHHHHHHHHHHHH
Confidence            5 59999999887765554433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.43  E-value=6.6e-12  Score=122.09  Aligned_cols=150  Identities=13%  Similarity=0.014  Sum_probs=112.7

Q ss_pred             HhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCc
Q 045564           69 GWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQR  148 (296)
Q Consensus        69 ~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~  148 (296)
                      +...+++.|+++++|++..+++.+.+...++..++.+++|+++|| +|||+++.++.++..++.+++....         
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~---------  362 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIG---------  362 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhcc---------
Confidence            355788999988999999999999999999999999999999999 7999998887766554433222111         


Q ss_pred             cCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 045564          149 CDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNL  228 (296)
Q Consensus       149 c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~  228 (296)
                                  ........+..++.+....+..+..++++.|.+|+ +.|++.+++++...++|+.+||++.|++.+.+
T Consensus       363 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~  429 (496)
T PRK03893        363 ------------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT-EQRAAGLGFTYNVGALGGALAPILGALIAQRL  429 (496)
T ss_pred             ------------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCH-HHhhcccchhhhhhhHHHHHHHHHHHHHhccC
Confidence                        01222233333333333333456777888999984 47899999988999999999999999999999


Q ss_pred             cchhhHHHHHHHH
Q 045564          229 SWRLGSGLNIAAN  241 (296)
Q Consensus       229 gw~~~F~i~~~~~  241 (296)
                      ||+..+.+.++..
T Consensus       430 g~~~~~~~~~~~~  442 (496)
T PRK03893        430 DLGTALASLSFSL  442 (496)
T ss_pred             ChHHHHHHHHHHH
Confidence            9988876655433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.41  E-value=2.4e-11  Score=112.40  Aligned_cols=164  Identities=9%  Similarity=-0.011  Sum_probs=115.1

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHH-HHHHHHHHHHHHHHHHhhccccCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQV-IWISSFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~-i~i~~~l~~ig~~~la~~~~~p~~  144 (296)
                      ..+....+++.|+.+.+|.+..+++.+.+...++..++.+++|+++|| +|||+. +........++.+...+.......
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (399)
T TIGR00893       230 GLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAIIAGLVLSLLMFATNY  308 (399)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Confidence            666677889999999999999999999999999999999999999999 799862 111111111221111111100000


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                                      ... ....+...+.+.+..+..+...++.+|.+|+ +.|++.+++++...++|..++|.+.+++
T Consensus       309 ----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~g~~~~~~i~g~l  370 (399)
T TIGR00893       309 ----------------VNI-PYAALALVALGFFGLGAGAIGWALISDNAPG-NIAGLTGGLINSLGNLGGIVGPIVIGAI  370 (399)
T ss_pred             ----------------chh-HHHHHHHHHHHHhchhhhhHHHHHHHhhcCh-hHHHHHHHHHHHHHHHhhhhhhHHhhhh
Confidence                            001 1222222333333333788899999999994 4789999999999999999999999999


Q ss_pred             hcccc-chhhHHHHHHHHHHHHHHH
Q 045564          225 EDNLS-WRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       225 ~~~~g-w~~~F~i~~~~~~~~~~~~  248 (296)
                      .+..| |++.|++.+++.+++.+..
T Consensus       371 ~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       371 AATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             ccCCCchhHHHHHHHHHHHHHHHHH
Confidence            99888 9999998887766665544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.41  E-value=1.3e-11  Score=131.65  Aligned_cols=134  Identities=11%  Similarity=0.035  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHhCCChh--HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 045564           72 ANLMVYMIQEFHITSI--NSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRC  149 (296)
Q Consensus        72 ~~l~~yl~~~lg~s~~--~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c  149 (296)
                      ..+..++...++.+..  ..+++.+++.+...++++++|+++|| +|||++++++.++.+++.++..++...        
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~~~~~~~~~~~~~~--------  100 (1146)
T PRK08633         30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFEVGLTLLIVLAYYL--------  100 (1146)
T ss_pred             HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            3344455556666543  35788899999999999999999999 799999999887776666555443211        


Q ss_pred             CCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 045564          150 DIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDN  227 (296)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~  227 (296)
                                  .+...++++|++.|++.+...+...++++|.+|++ +|+.+++++..+.++|.++||.+++++.+.
T Consensus       101 ------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        101 ------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE-NLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             ------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc-cchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                        13567889999999999999999999999999954 789999999999999999999999998765

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.41  E-value=2.6e-11  Score=117.32  Aligned_cols=159  Identities=14%  Similarity=0.072  Sum_probs=108.6

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc--chHHHH-HHHHHHHHHHHHHHHhhcccc
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFL--GSFQVI-WISSFISLLGTILLDSTATFD  142 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~i--GR~~~i-~i~~~l~~ig~~~la~~~~~p  142 (296)
                      ..++...++|.|++++.|++..+++.+..++.++..++.+++|+++|| +  |||+.. .+...+..++.+.+.+.   +
T Consensus       268 ~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l~~~~~~~~~~~---~  343 (452)
T PRK11273        268 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWLN---P  343 (452)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHHHHHHHHHHHHh---c
Confidence            667778899999999999999999888888888999999999999999 6  455432 22223333332222111   1


Q ss_pred             CCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHH-HHHHH
Q 045564          143 SLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVI-SSAAF  221 (296)
Q Consensus       143 ~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i-~p~v~  221 (296)
                      .                  .+....++..++.+.+..........+..|.+|+ +.|++++++++...++|+.+ +|.+.
T Consensus       344 ~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~g~~~~g~~v~  404 (452)
T PRK11273        344 A------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPK-KAAGTAAGFTGLFGYLGGSVAASAIV  404 (452)
T ss_pred             c------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh-hhhhhHHHHHHHHHHHHHHHhhhhhH
Confidence            0                  0112233333444443322233344566788984 47899999988888888654 79999


Q ss_pred             HhhhccccchhhHHHHHHHHHHHHHH
Q 045564          222 VYIEDNLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       222 ~~l~~~~gw~~~F~i~~~~~~~~~~~  247 (296)
                      |++.+..||+..|++..++.+++++.
T Consensus       405 g~l~~~~g~~~~f~~~~~~~~~~~~~  430 (452)
T PRK11273        405 GYTVDFFGWDGGFMVMIGGSILAVIL  430 (452)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            99999999999999888766665543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.40  E-value=7.1e-12  Score=118.35  Aligned_cols=175  Identities=11%  Similarity=0.097  Sum_probs=132.1

Q ss_pred             hhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-chHHHH-HHHHHHH
Q 045564           54 TALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFL-GSFQVI-WISSFIS  128 (296)
Q Consensus        54 ~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~i-GR~~~i-~i~~~l~  128 (296)
                      |.++.+.+..+  = ..|++..+.|.|+.+..|+|..++.+..+.+-.+...++++.||+|||++ |||... +++.+..
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            33455555555  4 88999999999999999999999999999999999999999999999988 777654 3344444


Q ss_pred             HHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHH
Q 045564          129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFI  208 (296)
Q Consensus       129 ~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~  208 (296)
                      .++.+.....+   .                  .+..+..+..+++|+..-+..-.+.....|..|++ .-+++-+.-.+
T Consensus       332 ~~~~~~~w~~~---~------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~-AaGtA~Gf~Gl  389 (448)
T COG2271         332 TASLVLYWLAP---N------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKK-AAGTATGFVGL  389 (448)
T ss_pred             HHHHHHHHcCC---C------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHh-hccchhchhhh
Confidence            44333333221   1                  23456666777788777777777788888999843 56777777666


Q ss_pred             HHHH-HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHh
Q 045564          209 LTYA-STVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLS  250 (296)
Q Consensus       209 ~~~i-G~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~  250 (296)
                      ...+ |+.++....+++.|.+||..+|.+..+..+++.+++++
T Consensus       390 f~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         390 FAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             HHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence            6777 88899999999999999999999887766666655443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.40  E-value=2.2e-11  Score=117.10  Aligned_cols=144  Identities=11%  Similarity=0.053  Sum_probs=102.0

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH-HHHhhccccCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTI-LLDSTATFDSL  144 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~-~la~~~~~p~~  144 (296)
                      .++++..+++.|+++.+|++..+++.......++..++.+++|+++|| +|||+.+.++.++..+... .+....  +. 
T Consensus       253 ~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~--~~-  328 (434)
T PRK15075        253 SFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPALSWLV--AA-  328 (434)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHH--cC-
Confidence            677788889999999899999998888888888899999999999999 7999988776544332111 111110  00 


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHH-HHHHHHHHHHHHHHHh
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFF-ILTYASTVISSAAFVY  223 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y-~~~~iG~~i~p~v~~~  223 (296)
                                       .......+..++.+++.+...+...++..|.+|++ .|++++++.+ ++..+++.++|.+.++
T Consensus       329 -----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~-~rg~~~g~~~~~~~~~~g~~~p~~~g~  390 (434)
T PRK15075        329 -----------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAE-VRTAGFSLAYSLATAIFGGFTPAISTW  390 (434)
T ss_pred             -----------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCC-ccchheeHHHHHHHHHHhhhHHHHHHH
Confidence                             01122333344455666666666778889999954 7899988844 3434457789999999


Q ss_pred             hhccccch
Q 045564          224 IEDNLSWR  231 (296)
Q Consensus       224 l~~~~gw~  231 (296)
                      +.+..|++
T Consensus       391 i~~~~g~~  398 (434)
T PRK15075        391 LIHVTGDK  398 (434)
T ss_pred             HHHhcCCc
Confidence            99988854

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.40  E-value=1.3e-11  Score=117.83  Aligned_cols=165  Identities=11%  Similarity=0.019  Sum_probs=107.0

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      +++....+++.|+.+++|++..+.+.+.+++.+...+++++.|+++|| +||||++.++..+..++...+......+.+.
T Consensus        25 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (420)
T PRK09528         25 IWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLVLFGPFFIYVFAPLLQ  103 (420)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455567889999999999999999999999999999999999999999 7999999887665554433221111000000


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                     .......+++.++.+.+.....+....+. +.++ + .++..++......++|..++|.+++++.
T Consensus       104 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~~g~~~g~~~~~~~~g~~i~~~~~g~l~  165 (420)
T PRK09528        104 ---------------YNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERVS-R-RSGFEYGRARMWGSLGWALCAFIAGILF  165 (420)
T ss_pred             ---------------HHHHHHHHHHHHHhhhhhccchhhhhhHH-HHHH-h-hccccchhhHHhhhHHHHHHHHHHHHHH
Confidence                           00001112222223332222223333322 2222 2 3455667767778999999999999997


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHh
Q 045564          226 DNLSWRLGSGLNIAANLAGVVIFLS  250 (296)
Q Consensus       226 ~~~gw~~~F~i~~~~~~~~~~~~~~  250 (296)
                      + .+|++.|++.++..++.+++++.
T Consensus       166 ~-~~~~~~f~~~~~~~~~~~~~~~~  189 (420)
T PRK09528        166 N-INPQINFWLGSGSALILLVLLFF  189 (420)
T ss_pred             h-cCchHhHHHHHHHHHHHHHHHhc
Confidence            6 48999999887766555544443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.40  E-value=3.1e-11  Score=115.09  Aligned_cols=157  Identities=11%  Similarity=-0.042  Sum_probs=124.0

Q ss_pred             HHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 045564           67 GEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRP  146 (296)
Q Consensus        67 ~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~  146 (296)
                      ..+...+++.|+.+.+|.+..+.+.+.+...++..++.++.++++|| .++++.+..+.++..++.+++....       
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~-------  310 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLMP-------  310 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHccc-------
Confidence            34456678889988899999999999999999999999999999999 6888888888777766655443221       


Q ss_pred             CccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045564          147 QRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIED  226 (296)
Q Consensus       147 ~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~  226 (296)
                                      +.....++.++.|++.+...+...+++.|.+|+ +.|++.+++++...++|..+||.+.|++.+
T Consensus       311 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~  373 (417)
T PRK10489        311 ----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPD-EMLGRINGLWTAQNVTGDAIGAALLGGLGA  373 (417)
T ss_pred             ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence                            233455667777888877777778889999984 478999999999999999999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHHH
Q 045564          227 NLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       227 ~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      .+|++..+++.+++.++..++.
T Consensus       374 ~~g~~~~~~~~~~~~~~~~~~~  395 (417)
T PRK10489        374 MMTPVASASASGFGLLIIGVLL  395 (417)
T ss_pred             HhchhhHHHHHHHHHHHHHHHH
Confidence            8898888887776554444333

>PTZ00207 hypothetical protein; Provisional

Probab=99.39  E-value=3.7e-11  Score=119.81  Aligned_cols=170  Identities=16%  Similarity=0.105  Sum_probs=124.6

Q ss_pred             CCchhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q 045564           51 GGRTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS  128 (296)
Q Consensus        51 ~~~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~  128 (296)
                      ++|..+...+.+.. . ..|+...+ ...+.+++|++..+.+++.++.... .++.+++|+++|| +|||+++.++.+++
T Consensus        25 ~Rw~~lva~~~~~~~~g~~y~fsv~-s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr-~G~R~vllig~ll~  101 (591)
T PTZ00207         25 RRFALLVLGAFCSICTSFMYAFNLI-SGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDY-LGPRPIFVLSMTVF  101 (591)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHH-hCcHHHHHHHHHHH
Confidence            34544444444444 4 56655543 3467889999999998887774443 4566678999999 79999999999999


Q ss_pred             HHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHH
Q 045564          129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFI  208 (296)
Q Consensus       129 ~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~  208 (296)
                      .+|+++++++.. ...                ..+.+.+++.|++.|+|.+...+.....+.+.|| + +|+...++...
T Consensus       102 ~iG~ll~ala~~-~~i----------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~-~RG~a~Gi~~~  162 (591)
T PTZ00207        102 CLGTLLFALTFQ-EVI----------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-S-NRGAVVAIMKT  162 (591)
T ss_pred             HHHHHHHHHHhc-ccc----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-h-hhHHHHHHHHH
Confidence            999998887621 100                0246778889999999999888888888999998 3 58999999999


Q ss_pred             HHHHHHHH-HHHHHHhhhccccchhhHHHHHHHHHHH
Q 045564          209 LTYASTVI-SSAAFVYIEDNLSWRLGSGLNIAANLAG  244 (296)
Q Consensus       209 ~~~iG~~i-~p~v~~~l~~~~gw~~~F~i~~~~~~~~  244 (296)
                      ..++|+.+ +++..+++.+  +|+..|++.+++.++.
T Consensus       163 ~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv  197 (591)
T PTZ00207        163 FTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVV  197 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHH
Confidence            99999875 5555666553  5777777766644443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.39  E-value=1.6e-11  Score=115.05  Aligned_cols=147  Identities=14%  Similarity=0.059  Sum_probs=113.8

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ...+...+++.|+.+++|++..+++.+.+...++..++.++.|+++|| +|||+.+.++.++..+..+.+....      
T Consensus       253 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~------  325 (405)
T TIGR00891       253 YSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLIIPVFAIG------  325 (405)
T ss_pred             HHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHHHHHHHhC------
Confidence            444566778999999999999999999999999999999999999999 7999998887765432221111110      


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                      .+...+.++.++.++..++..+..++++.|.+|++ .|++.+++.+...++|+.++|++.|++.
T Consensus       326 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~g~~~~g~l~  388 (405)
T TIGR00891       326 ----------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTD-QRAAGLGFTYQLGNLGGALAPIIGALLA  388 (405)
T ss_pred             ----------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcc-hhHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence                            12234445555666666667778888999999854 7899999989999999999999999999


Q ss_pred             cccc-chhhHHH
Q 045564          226 DNLS-WRLGSGL  236 (296)
Q Consensus       226 ~~~g-w~~~F~i  236 (296)
                      +..| |+..|..
T Consensus       389 ~~~g~~~~~~~~  400 (405)
T TIGR00891       389 QRLDEYGTALAS  400 (405)
T ss_pred             HhccccchhHHh
Confidence            9888 7766654

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.38  E-value=4.3e-11  Score=117.40  Aligned_cols=172  Identities=10%  Similarity=0.040  Sum_probs=126.0

Q ss_pred             CCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----chHHH-H
Q 045564           51 GGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFL-----GSFQV-I  121 (296)
Q Consensus        51 ~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~i-----GR~~~-i  121 (296)
                      ..+|....++...+  . ..+.....++.|+. +.|.+..+.+....+...  +++.++.|+++|| +     ||||. +
T Consensus         9 ~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr-~~~~~~Grrr~~l   84 (491)
T PRK11010          9 FQQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFSLVGQA--YVFKFLWSPLMDR-YTPPFLGRRRGWL   84 (491)
T ss_pred             HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCCchHHH
Confidence            34444555555555  3 44445556677765 458888888876333222  4688999999999 7     99986 5


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhh
Q 045564          122 WISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGI  201 (296)
Q Consensus       122 ~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~  201 (296)
                      .++.+...++.+++++..  |                  ..+...+++.+++.+++.+...+...++..|.+|++ +|++
T Consensus        85 l~~~i~~~~~~~~~a~~~--~------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~-~rg~  143 (491)
T PRK11010         85 LATQLLLLVAIAAMGFLE--P------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE-ERGA  143 (491)
T ss_pred             HHHHHHHHHHHHHHHHcC--C------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh-hhHH
Confidence            566666666665554431  1                  124566777888889999999999999999999844 6899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc-cccchhhHHHHHHHHHHHHHH
Q 045564          202 FFNWFFILTYASTVISSAAFVYIED-NLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       202 ~f~~~y~~~~iG~~i~p~v~~~l~~-~~gw~~~F~i~~~~~~~~~~~  247 (296)
                      +.++..++.++|..+++.+.+++.+ ..|||..|++.++..++..+.
T Consensus       144 ~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~  190 (491)
T PRK11010        144 GAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIA  190 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            9999889999999999999999988 469999999988766555444

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.38  E-value=4.5e-11  Score=113.03  Aligned_cols=160  Identities=16%  Similarity=0.081  Sum_probs=122.5

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .++....+++.|+.+ .|.  .+.+...+.+.++..++.++.|+++|| +||||.+.++.++..++.+++....      
T Consensus       231 ~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~------  300 (399)
T PRK05122        231 GFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLAP------  300 (399)
T ss_pred             HHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhc------
Confidence            444455677777753 455  344556677778888899999999999 7999999888887777665554321      


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                       +...+++.+++.|++.+...+.......|.+| ++.|++.+++++...++|..++|.+.|++.
T Consensus       301 -----------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  362 (399)
T PRK05122        301 -----------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVP-PQNRGAALGAYSVFLDLSLGITGPLAGLVA  362 (399)
T ss_pred             -----------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             22345667788899988888887788888887 457899999999999999999999999999


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHhCCC
Q 045564          226 DNLSWRLGSGLNIAANLAGVVIFLSGKH  253 (296)
Q Consensus       226 ~~~gw~~~F~i~~~~~~~~~~~~~~~~~  253 (296)
                      +..||++.|++.+++.+++++..+...+
T Consensus       363 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        363 SWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9899999999988877776665444333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.38  E-value=6.1e-11  Score=111.86  Aligned_cols=151  Identities=11%  Similarity=0.073  Sum_probs=116.3

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRC  149 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c  149 (296)
                      ...+++.|+.+ .|.+..+++...+...++..++.++.|+++|| +|||+.+..+.++..++.+.+. ..          
T Consensus       219 ~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~~----------  285 (381)
T PRK03633        219 LYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-SQ----------  285 (381)
T ss_pred             HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-hh----------
Confidence            34567778864 69999999988999999999999999999999 7999999888777766554322 10          


Q ss_pred             CCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 045564          150 DIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLS  229 (296)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~g  229 (296)
                                     ......+++.+++.+...|...+...|..|++ +++...+.++...++|..+||.+.|++.|.+|
T Consensus       286 ---------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g  349 (381)
T PRK03633        286 ---------------AAMAPALFILGAAGFTLYPVAMAWACEKVEHH-ELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS  349 (381)
T ss_pred             ---------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                           12233455667666677788888889988743 45666777778889999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHH
Q 045564          230 WRLGSGLNIAANLAGVVIFL  249 (296)
Q Consensus       230 w~~~F~i~~~~~~~~~~~~~  249 (296)
                      |++.|.+.+.+.+++.+..+
T Consensus       350 ~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        350 DNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             ccHHHHHHHHHHHHHHHHHH
Confidence            99999988776665554443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.38  E-value=7.7e-11  Score=111.42  Aligned_cols=160  Identities=11%  Similarity=-0.067  Sum_probs=121.4

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ..++...+++.|+.+++|.+..+++.+.+...++..++.++.|+++|| +|||+.+ ++..+..++...+....      
T Consensus       220 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~-~~~~~~~~~~~~l~~~~------  291 (390)
T PRK03545        220 AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLL-IAIALLLVCLLLLLPAA------  291 (390)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHH-HHHHHHHHHHHHHHHHh------
Confidence            455556778888888899999999999999999999999999999999 7987654 44444433333222111      


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                      .+...+++..++.|++.+...+...+.+.+..| + .|+++.++++...++|..+||++.|++.
T Consensus       292 ----------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~-~~~~~~g~~~~~~~~g~~~G~~~~G~~~  353 (390)
T PRK03545        292 ----------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-D-ATDVAMALFSGIFNIGIGAGALLGNQVS  353 (390)
T ss_pred             ----------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-C-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            123455566677777777666777777888776 3 5788899888888999999999999999


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHhC
Q 045564          226 DNLSWRLGSGLNIAANLAGVVIFLSG  251 (296)
Q Consensus       226 ~~~gw~~~F~i~~~~~~~~~~~~~~~  251 (296)
                      +.+|++..|++.+++.++++++....
T Consensus       354 ~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (390)
T PRK03545        354 LHLGLSSIGYVGAALALAALVWSILI  379 (390)
T ss_pred             hccChhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988877777665433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.37  E-value=2.6e-11  Score=129.73  Aligned_cols=138  Identities=9%  Similarity=-0.019  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHH
Q 045564           87 INSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAV  166 (296)
Q Consensus        87 ~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~  166 (296)
                      ...+++.+++.+...++.+++|+++|| +|||+++.+.....++..++..+....                    .+.+.
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~--------------------~s~~~  110 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHL--------------------NSVPL  110 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHH--------------------hhHHH
Confidence            345677888999999999999999999 799998644222221111111111100                    14577


Q ss_pred             HHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Q 045564          167 LYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVV  246 (296)
Q Consensus       167 l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~  246 (296)
                      +++.|++.|++.+...|...+++.|++|+ ++|+.+.++..++.++|.++||.++|++.+..||++.|.+.+++.+++++
T Consensus       111 l~~~~~l~gi~~a~~~p~~~a~l~~~~~~-~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~  189 (1140)
T PRK06814        111 LFAALFLMGIHSALFGPIKYSILPDHLNK-DELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWL  189 (1140)
T ss_pred             HHHHHHHHHHHHHhhchHHHHhhHhhcCc-cccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999995 47899999999999999999999999999989999998555444444333

>TIGR00901 2A0125 AmpG-related permease

Probab=99.37  E-value=3.5e-11  Score=112.05  Aligned_cols=155  Identities=12%  Similarity=0.094  Sum_probs=114.0

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh----cchHHHH-HHHHHHHHHHHHHHHhhccccCC
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSF----LGSFQVI-WISSFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~----iGR~~~i-~i~~~l~~ig~~~la~~~~~p~~  144 (296)
                      +...+...+.+++|+|.++.+..... .....+ .++.|+++||+    +||||.+ +.+.++..+....+++..  +  
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~--~--   79 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV--P--   79 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC--c--
Confidence            34445556667899999999888655 333333 88999999994    3999975 555666655544443321  1  


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                                      ..+...++...++.+++.+...+...++++|.+|+ ++|+.+.++...+.++|.++++.+++++
T Consensus        80 ----------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~l~~~l  142 (356)
T TIGR00901        80 ----------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSD-EELGYGSTIYIVGYRAGMLLSGSLALVL  142 (356)
T ss_pred             ----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-hhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            12334455555667778888889999999999984 4789999998999999999999999999


Q ss_pred             hcccc--------chhhHHHHHHHHHHHHHH
Q 045564          225 EDNLS--------WRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       225 ~~~~g--------w~~~F~i~~~~~~~~~~~  247 (296)
                      ....|        ||..|++.++..++.+++
T Consensus       143 ~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~  173 (356)
T TIGR00901       143 ASPEFANTGLITLWGYIFFWTALLILPGLLV  173 (356)
T ss_pred             hhhcccccccccccHHHHHHHHHHHHHHHHH
Confidence            87777        999999988876665544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.37  E-value=3.5e-11  Score=111.86  Aligned_cols=158  Identities=14%  Similarity=0.153  Sum_probs=111.4

Q ss_pred             HHHHHHHHHhC--CChhHHHHHHHH--HH---HHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           73 NLMVYMIQEFH--ITSINSALISNI--VN---GFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        73 ~l~~yl~~~lg--~s~~~a~~i~~~--~~---~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ++..++.++..  .+.++.+.+.+.  +.   +...++.++.|+++|| +||||++.++.++..++.+++.+...++.. 
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-   91 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIGLLPSYATI-   91 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhCCChhhh-
Confidence            44445555543  333444333322  22   2334678999999999 799999999999998888776654311000 


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                    .......++++|++.|++.+...+...++++|.+|++ +|+...++.+.+..+|..+++.+...+.
T Consensus        92 --------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883        92 --------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPG-KRGFYGSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             --------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          0011235778899999999999999999999999844 6888999988899999999988776553


Q ss_pred             --------ccccchhhHHHHHHHHHHHHHH
Q 045564          226 --------DNLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       226 --------~~~gw~~~F~i~~~~~~~~~~~  247 (296)
                              +.++||+.|.+.++..+++.++
T Consensus       157 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  186 (394)
T TIGR00883       157 YLLGDDALLEWGWRIPFLVSAVLVLIGLYL  186 (394)
T ss_pred             HhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence                    3579999999877766555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.37  E-value=1.7e-11  Score=118.90  Aligned_cols=161  Identities=11%  Similarity=-0.011  Sum_probs=121.8

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchHHHHHHHHHHH--HHHHHHHHhhcccc
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSF-LGSFQVIWISSFIS--LLGTILLDSTATFD  142 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~-iGR~~~i~i~~~l~--~ig~~~la~~~~~p  142 (296)
                      .++....+++.|+. ++|++..+++.+.++..++..++.+++|+++||. +++++...++....  .++.+++...    
T Consensus       256 ~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----  330 (455)
T TIGR00892       256 GFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA----  330 (455)
T ss_pred             HccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence            66666778888986 4799999999999999999999999999999983 23444443333222  2222222111    


Q ss_pred             CCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 045564          143 SLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFV  222 (296)
Q Consensus       143 ~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~  222 (296)
                                         .+...+++.+++.|++.+...++..+.+.|.+|+ +.+++.+++++...++|..+||.+.|
T Consensus       331 -------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~igp~i~G  390 (455)
T TIGR00892       331 -------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA-QRFSSAVGLVTIVECCAVLIGPPLAG  390 (455)
T ss_pred             -------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH-HHHhhHHhHHHHHHHHHHHcccccee
Confidence                               1235567778889999999999999999999984 47899999999999999999999999


Q ss_pred             hhhccc-cchhhHHHHHHHHHHHHHHHHhC
Q 045564          223 YIEDNL-SWRLGSGLNIAANLAGVVIFLSG  251 (296)
Q Consensus       223 ~l~~~~-gw~~~F~i~~~~~~~~~~~~~~~  251 (296)
                      ++.+.. +|++.|++.+++.+++.+..++.
T Consensus       391 ~l~~~~g~~~~~f~~~~~~~li~~~~~~~~  420 (455)
T TIGR00892       391 RLVDATKNYKYIFYASGSIVVSAGLFLAIG  420 (455)
T ss_pred             eeehhcCCcchHHHHhhHHHHHHHHHHHHH
Confidence            998877 59999999888776666544443

>PRK12382 putative transporter; Provisional

Probab=99.37  E-value=3.3e-11  Score=113.84  Aligned_cols=157  Identities=14%  Similarity=0.094  Sum_probs=121.8

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .+..+..+.+.|+.+ .|.+.  .+.....+..+..++.++.|++.|| +||||.+.++..+..++.+++.+..      
T Consensus       231 ~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~------  300 (392)
T PRK12382        231 GFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAP------  300 (392)
T ss_pred             HHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcc------
Confidence            444455666777754 45543  4555666777788899999999999 7999999998888877766544321      


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                       +...++++.++.+++.+...+...+...|.+|+ ++|++.+++++...++|..++|.+.+++.
T Consensus       301 -----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~ig~~~~g~l~  362 (392)
T PRK12382        301 -----------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPS-QVRGTALGGYAAFQDIAYGVSGPLAGMLA  362 (392)
T ss_pred             -----------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             224456677788888888888888888898884 47899999999999999999999999999


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHh
Q 045564          226 DNLSWRLGSGLNIAANLAGVVIFLS  250 (296)
Q Consensus       226 ~~~gw~~~F~i~~~~~~~~~~~~~~  250 (296)
                      +..||++.|.+.+++.+++.++.+.
T Consensus       363 ~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        363 TSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHhCchHHHHHHHHHHHHHHHHHHh
Confidence            9999999999988877777665543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.36  E-value=2.6e-11  Score=114.40  Aligned_cols=181  Identities=16%  Similarity=0.097  Sum_probs=146.9

Q ss_pred             ccCCchhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHH
Q 045564           49 KRGGRTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSF  126 (296)
Q Consensus        49 ~~~~~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~  126 (296)
                      ++.++|.++....... . ....+.+.+.+++.+++|+|+.|.++++.+-.+...+.-++-|++.|| +|-|++..++.+
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~   87 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSML   87 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHH
Confidence            4567777766666555 4 555566778888999999999999999999999999999999999999 899999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHH
Q 045564          127 ISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWF  206 (296)
Q Consensus       127 l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~  206 (296)
                      +..+-.+.++++...|                    +.+.+++..++.|++.| ..+...++.+..||++ +++.+.+++
T Consensus        88 l~~IP~~~~~~a~~~~--------------------~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~-~qG~AlGI~  145 (417)
T COG2223          88 LLLIPCLGLAFAVTYP--------------------STWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKE-KQGLALGIA  145 (417)
T ss_pred             HHHHHHHHHHHHccCC--------------------chHHHHHHHHHHhcccc-eehcccccccccCChh-hhhHHHHHh
Confidence            9888777777764222                    22567777788888766 5667778899999954 789999998


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccc---chhhHHHHHHHHHHHHHHHHhCCC
Q 045564          207 FILTYASTVISSAAFVYIEDNLS---WRLGSGLNIAANLAGVVIFLSGKH  253 (296)
Q Consensus       207 y~~~~iG~~i~p~v~~~l~~~~g---w~~~F~i~~~~~~~~~~~~~~~~~  253 (296)
                      . +.|+|..+..+++.++....|   |+..-.+..+.+++..+.+++..+
T Consensus       146 g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~  194 (417)
T COG2223         146 G-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN  194 (417)
T ss_pred             c-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            8 889999999999999988888   999988888888777766665544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.36  E-value=4e-11  Score=113.19  Aligned_cols=155  Identities=16%  Similarity=0.021  Sum_probs=117.2

Q ss_pred             HhHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           69 GWVANLMVYMIQEFHITSI---NSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        69 ~~~~~l~~yl~~~lg~s~~---~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .....++.|+.+..+....   ..+.+.++..++..++.++.|+++|| +|||+.+.++.++..++.+.+....      
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~------  309 (408)
T PRK09874        237 SIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSFVQ------  309 (408)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHhc------
Confidence            3455667777765443322   23445556667778888899999999 7999999988877666554433221      


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                       +.+.+++.+++.|++.+...+...+...+..|+ +.|++.+++++...++|..+||.++|++.
T Consensus       310 -----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~g~~~gp~~~G~l~  371 (408)
T PRK09874        310 -----------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSN-QIAGRIFSYNQSFRDIGNVTGPLMGAAIS  371 (408)
T ss_pred             -----------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCc-ccceeeehHHHHHHHHHHHhhHHHHHHHH
Confidence                             234566777888999998888888888887774 46888999988889999999999999999


Q ss_pred             ccccchhhHHHHHHHHHHHHHHH
Q 045564          226 DNLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       226 ~~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      +..||++.|++.++..+++.+..
T Consensus       372 ~~~g~~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        372 ANYGFRAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHH
Confidence            99999999999888777666544

>TIGR00897 2A0118 polyol permease family

Probab=99.35  E-value=1.2e-10  Score=110.89  Aligned_cols=161  Identities=16%  Similarity=0.012  Sum_probs=117.0

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHH-HHHHHHHHHHHHHHhhccccCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIW-ISSFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~-i~~~l~~ig~~~la~~~~~p~~  144 (296)
                      .+++...++|.|++ ++|++..+++.+.....++..++.++.|+++|| +|||+.+. .+.+...++.+.+...   |..
T Consensus       237 ~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~~~~~l~~~---~~~  311 (402)
T TIGR00897       237 GLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGIFTLALYYI---PQH  311 (402)
T ss_pred             HHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHH---HHc
Confidence            67777888998884 589999999988888999999999999999999 79988764 2333333322222211   110


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                      .               ..+....++..++.|++.+...+ ..+...|..| + +|++.+++++.+.++|+.++|.+.+++
T Consensus       312 ~---------------~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~-~~g~~~g~~~~~~~lg~~~gp~i~g~l  373 (402)
T TIGR00897       312 F---------------GHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-K-HKGAAMSVLNLSAGLSAFLAPAIAVLF  373 (402)
T ss_pred             c---------------CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-c-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0               01234455566677777666544 3455667665 3 689999999999999999999999999


Q ss_pred             hccccchhhHHHHHHHHHHHHHHHH
Q 045564          225 EDNLSWRLGSGLNIAANLAGVVIFL  249 (296)
Q Consensus       225 ~~~~gw~~~F~i~~~~~~~~~~~~~  249 (296)
                      .+..||...|++.+++.+++.++.+
T Consensus       374 ~~~~g~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       374 IGFFGAIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             HhhcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998887766655443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.35  E-value=3.5e-11  Score=114.94  Aligned_cols=154  Identities=10%  Similarity=0.002  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 045564           70 WVANLMVYMIQEF---HITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRP  146 (296)
Q Consensus        70 ~~~~l~~yl~~~l---g~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~  146 (296)
                      ....++.|+.+.+   +.+..+.+.+.++......++.+++|+++|| +|||+.+.++.++..++.+++.+..       
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~~-------  313 (420)
T PRK09528        242 FDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFAT-------  313 (420)
T ss_pred             HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhcc-------
Confidence            3345677776554   4566677888888888889999999999999 7999999998888877766654432       


Q ss_pred             CccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHH-HHHHHHHHHHHHHHHHHhhh
Q 045564          147 QRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNW-FFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       147 ~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~-~y~~~~iG~~i~p~v~~~l~  225 (296)
                                      +...+++.+++.+++.+...+....++.|.+|++ .+++.++. +++..++|..++|.+.|++.
T Consensus       314 ----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~lg~~ig~~~~G~l~  376 (420)
T PRK09528        314 ----------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVR-LSATIYLVGFQFAKQLGAVFLSTLAGNLY  376 (420)
T ss_pred             ----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-ceeeeeeehHHHHHHHHHHHHHHHHHHHH
Confidence                            2345566677888888877777788889999854 56666655 56778899999999999999


Q ss_pred             ccccchhhHHHHHHHHHHHHHHH
Q 045564          226 DNLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       226 ~~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      +..||+..|.+.+++.++..++.
T Consensus       377 ~~~G~~~~f~~~~~~~~i~~~~~  399 (420)
T PRK09528        377 DSIGFQGTYLILGGIVLLFTLIS  399 (420)
T ss_pred             HhhCchHHHHHHHHHHHHHHHHH
Confidence            99999999998777665554443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.34  E-value=5.7e-11  Score=113.04  Aligned_cols=163  Identities=9%  Similarity=0.031  Sum_probs=114.8

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCC
Q 045564           73 NLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIG  152 (296)
Q Consensus        73 ~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~  152 (296)
                      +...+..+++|++..+++.......++..++.+++|+++|| +|||+.+.++.++..++.+++.+... +....      
T Consensus       305 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------  376 (481)
T TIGR00879       305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGA-SFVTG------  376 (481)
T ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhh-cccCC------
Confidence            33445556789999888888888999999999999999999 79999999988887777666653321 10000      


Q ss_pred             CcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchh
Q 045564          153 LSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRL  232 (296)
Q Consensus       153 ~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~  232 (296)
                          .+. ......+....++.+....+..+....+..|.+|++ .|+...++.+...++|+.++|.+.+++.++.+|++
T Consensus       377 ----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~  450 (481)
T TIGR00879       377 ----SSK-SSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLS-LRPKGISIAVAANWLANFIVGFLFPTMLESIGVGG  450 (481)
T ss_pred             ----ccc-chhHHHHHHHHHHHHHHHccccCeehhhhhccCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence                000 001112222222222222234466677779999844 78999999999999999999999999998889999


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 045564          233 GSGLNIAANLAGVVIFL  249 (296)
Q Consensus       233 ~F~i~~~~~~~~~~~~~  249 (296)
                      .|++.+++.+++.++.+
T Consensus       451 ~f~~~~~~~~~~~i~~~  467 (481)
T TIGR00879       451 VFIFFGGLNVLGLIFVY  467 (481)
T ss_pred             eehhHHHHHHHHHHHHh
Confidence            99988877666655543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.34  E-value=1e-10  Score=110.65  Aligned_cols=156  Identities=13%  Similarity=-0.043  Sum_probs=117.5

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ..+....+++.|+.+ .|.+..+++.+.....++..++.++.|+++|| +|||+.+.++.+...++.+.+....      
T Consensus       235 ~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~------  306 (406)
T PRK11551        235 VLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALAAAP------  306 (406)
T ss_pred             HHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhcC------
Confidence            555666778888865 79999999999999999999999999999999 7999998886665555444332211      


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                       +...+++..++.+++.++..+...++..|.+|++ .|++..++++...++|..++|.+.|++.
T Consensus       307 -----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~-~~g~~~g~~~~~~~~g~~~g~~~~g~l~  368 (406)
T PRK11551        307 -----------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQ-VRGTGVGAAVAVGRLGSMAGPLLAGQLL  368 (406)
T ss_pred             -----------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchh-hhhhhhhHHHHhhhHHHHHHhhhHhhhh
Confidence                             1233445556677777777888889999999844 7899999999999999999999999998


Q ss_pred             ccc-cchhhHHHHHHHHHHHHHH
Q 045564          226 DNL-SWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       226 ~~~-gw~~~F~i~~~~~~~~~~~  247 (296)
                      +.. +|...+++...+.+++.+.
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~  391 (406)
T PRK11551        369 ALGRSTVGVIGASIPVILVAALA  391 (406)
T ss_pred             ccCCchHHHHHHHHHHHHHHHHH
Confidence            764 4555566555554444433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.34  E-value=1.3e-10  Score=111.63  Aligned_cols=160  Identities=8%  Similarity=-0.027  Sum_probs=102.6

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .+|+...+++.|+.+.+|++..+++...++...+..++.++.|+++|| +|||+.+.++.++..+.........  +.. 
T Consensus       258 ~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~--~~~-  333 (432)
T PRK10406        258 CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSAL--QNV-  333 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHH--HcC-
Confidence            688888999999999999999888888888777888888899999999 7999988776654433222111100  000 


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHH-HHHHHHHHHHHhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTY-ASTVISSAAFVYI  224 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~-iG~~i~p~v~~~l  224 (296)
                                      .+....+....+..++.+...+...++.+|.||++ .|++++++.|...+ +++..+|.+.+++
T Consensus       334 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~-~r~t~~g~~~~~g~~~~g~~~p~~~~~l  396 (432)
T PRK10406        334 ----------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQ-VRALGVGLSYAVANALFGGSAEYVALSL  396 (432)
T ss_pred             ----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-ccchhhhHHHHHHHHHHHhHHHHHHHHH
Confidence                            01111111112222333334455678889999954 79999999665545 4455678888866


Q ss_pred             hcccc-chhhHHHHHHHHHHHHHH
Q 045564          225 EDNLS-WRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       225 ~~~~g-w~~~F~i~~~~~~~~~~~  247 (296)
                      . ..| |...+++.+++.+++++.
T Consensus       397 ~-~~g~~~~~~~~~~~~~~i~~~~  419 (432)
T PRK10406        397 K-SIGMETAFFWYVTLMAVVAFLV  419 (432)
T ss_pred             H-HhCCCcHHHHHHHHHHHHHHHH
Confidence            4 445 555566555555554444

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=5.2e-12  Score=118.32  Aligned_cols=144  Identities=12%  Similarity=0.018  Sum_probs=129.5

Q ss_pred             HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCC
Q 045564           81 EFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPS  160 (296)
Q Consensus        81 ~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~  160 (296)
                      .++.+.++.+++.....+...+..++.|.+.|| +|+|-.+++|.++....++++++..                     
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~---------------------  157 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN---------------------  157 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence            356677888999999999999999999999999 8999999999999998888877653                     


Q ss_pred             chhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Q 045564          161 KVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAA  240 (296)
Q Consensus       161 ~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~  240 (296)
                        +.++++++|.+.|+|.+....+..++++|.||++.+|++..++..-...+|-++||.++|.+.+..|.+.+|.+.+++
T Consensus       158 --sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v  235 (464)
T KOG3764|consen  158 --SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIV  235 (464)
T ss_pred             --hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHH
Confidence              356899999999999999999999999999998888999999977788999999999999999999999999999997


Q ss_pred             HHHHHHHH
Q 045564          241 NLAGVVIF  248 (296)
Q Consensus       241 ~~~~~~~~  248 (296)
                      +++...+-
T Consensus       236 ~Lld~~L~  243 (464)
T KOG3764|consen  236 LLLDGALQ  243 (464)
T ss_pred             HHHHHHHH
Confidence            77765553

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.32  E-value=1.1e-10  Score=112.41  Aligned_cols=161  Identities=9%  Similarity=0.000  Sum_probs=108.3

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-c-hHHHHHHHHHHHHHHHHHHHhhccccC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFL-G-SFQVIWISSFISLLGTILLDSTATFDS  143 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~i-G-R~~~i~i~~~l~~ig~~~la~~~~~p~  143 (296)
                      .++++..+++.|+.+++|++..+++...+.+.++..++.+++|+++||+. + |++......+...+..+.+..   .|.
T Consensus       258 ~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~---~~~  334 (434)
T PRK11663        258 VRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL---MPF  334 (434)
T ss_pred             HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH---ccc
Confidence            55567778999998899999999999999999999999999999999932 2 233222222111111111111   111


Q ss_pred             CCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 045564          144 LRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVY  223 (296)
Q Consensus       144 ~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~  223 (296)
                                        .+.....+..+..|++............+|.+| ++.|++..++.++..++|..++|.+.++
T Consensus       335 ------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~p~~~g~  395 (434)
T PRK11663        335 ------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSH-KEAAGAATGFVGLFAYLGAALSGYPLAK  395 (434)
T ss_pred             ------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhccc-HhhHHhHHHHHHHHHHHHHHHhcccHHH
Confidence                              011122222233333222222334456788887 4478999999999999999999999999


Q ss_pred             hhccccchhhHHHHHHHHHHHHHHH
Q 045564          224 IEDNLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       224 l~~~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      +.+.+||+..|++.+++.+++.+..
T Consensus       396 l~~~~g~~~~f~~~~~~~~~~~~~~  420 (434)
T PRK11663        396 VLEIWHWTGFFVVISIAAGISALLL  420 (434)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888766655444

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.32  E-value=1.9e-10  Score=112.81  Aligned_cols=164  Identities=11%  Similarity=0.077  Sum_probs=116.9

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHH-HHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISN-IVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~-~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~  144 (296)
                      ..+....+.++|+.+++|++..+.+.+.. ...++..++.+++|+++|| +||||.+.++.++..++.+........+  
T Consensus       237 ~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~l~~~~l~~~~--  313 (491)
T PRK11010        237 GDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSNAGYWLLSITD--  313 (491)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence            44445567788888889999999998874 5567899999999999999 7999988777665555443322211000  


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                                       .+...+.+..++..+..|...+...++..++.++ +.+++.+++++...++|..+++.+.|++
T Consensus       314 -----------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~-~~~~t~~gl~~s~~~lg~~~~~~~~G~l  375 (491)
T PRK11010        314 -----------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNK-SFSATQFALLSALSAVGRVYVGPVAGWF  375 (491)
T ss_pred             -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             1122333334444444444445566777777774 3678889998888899999888899999


Q ss_pred             hccccchhhHHHHHHHHHHHHHHHHh
Q 045564          225 EDNLSWRLGSGLNIAANLAGVVIFLS  250 (296)
Q Consensus       225 ~~~~gw~~~F~i~~~~~~~~~~~~~~  250 (296)
                      .+.+||+..|.+.+++.+++++....
T Consensus       376 ~~~~G~~~~f~~~~~~~l~~l~~~~~  401 (491)
T PRK11010        376 VEAHGWPTFYLFSVAAAVPGLLLLLV  401 (491)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988887777665544

>TIGR01272 gluP glucose/galactose transporter

Probab=99.32  E-value=1.4e-10  Score=107.27  Aligned_cols=148  Identities=13%  Similarity=0.042  Sum_probs=114.1

Q ss_pred             hHHHhHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccC
Q 045564           66 LGEGWVANLMVYMIQE--FHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDS  143 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~--lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~  143 (296)
                      .--++..+.+.|+.+.  +|++..+++...+.+.++..++.+++++++|| +|+||.+.++.++..++.++.....    
T Consensus       155 ~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~~~~~l~~~~~----  229 (310)
T TIGR01272       155 AEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAVLLSIGAALTH----  229 (310)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHcC----
Confidence            3445667899999854  79999999999999999999999999999999 7999999888877776654333221    


Q ss_pred             CCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 045564          144 LRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVY  223 (296)
Q Consensus       144 ~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~  223 (296)
                                         +.. ...+.++.+++.+...|...+...+.+|++..++++  +. ....+|+.+.|.+.|+
T Consensus       230 -------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asa--i~-~~~~~Gg~i~P~l~G~  286 (310)
T TIGR01272       230 -------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHTSQGSG--IL-CLAIVGGAIVPLLQGS  286 (310)
T ss_pred             -------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH--HH-HHHHhcchHHHHHHHH
Confidence                               011 123455788999999999999998988854344444  33 4556899999999999


Q ss_pred             hhccccchhhHHHHHHHH
Q 045564          224 IEDNLSWRLGSGLNIAAN  241 (296)
Q Consensus       224 l~~~~gw~~~F~i~~~~~  241 (296)
                      +.|..|.+.+|++..++.
T Consensus       287 lad~~g~~~a~~v~~~~~  304 (310)
T TIGR01272       287 LADCLGIQLAFALPVPCY  304 (310)
T ss_pred             HHHhccchHHHHHHHHHH
Confidence            999889888988666644

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.31  E-value=2.8e-11  Score=117.91  Aligned_cols=145  Identities=22%  Similarity=0.185  Sum_probs=127.4

Q ss_pred             HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCC
Q 045564           81 EFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPS  160 (296)
Q Consensus        81 ~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~  160 (296)
                      ++.+++.+-+.+.+.+..+..++++.+|+++|| +|-|+++.++.++.++++++..+++..                   
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~~-------------------  126 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAASI-------------------  126 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            577889999999999999999999999999999 799999999999999988888776521                   


Q ss_pred             chhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc-ccchhhHHHHHH
Q 045564          161 KVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDN-LSWRLGSGLNIA  239 (296)
Q Consensus       161 ~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~-~gw~~~F~i~~~  239 (296)
                        +...+++.|+++|++.|...|++..+.+...|.. +|++..++.+.+..+|.+++-.++|++.+. .||+++|++.++
T Consensus       127 --~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~-Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~  203 (466)
T KOG2532|consen  127 --GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN-ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGI  203 (466)
T ss_pred             --cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHH
Confidence              2346788999999999999999999999999944 689999998888889999999999999988 899999999888


Q ss_pred             HHHHHHHHH
Q 045564          240 ANLAGVVIF  248 (296)
Q Consensus       240 ~~~~~~~~~  248 (296)
                      +..+-.+++
T Consensus       204 ~g~i~~~~w  212 (466)
T KOG2532|consen  204 VGLIWFILW  212 (466)
T ss_pred             HHHHHHHHH
Confidence            666555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.31  E-value=3.8e-10  Score=106.69  Aligned_cols=154  Identities=10%  Similarity=0.013  Sum_probs=125.9

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ..+...++.+.|+++ +|.+..+.+.+.++..++..++.++.+++.|| +|+|+.+.++.+...++.+.++.+.      
T Consensus       220 ~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~------  291 (382)
T TIGR00902       220 AHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVGRWAIIGAIE------  291 (382)
T ss_pred             HHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHHHHHHHHhHh------
Confidence            555566788889964 89999999999888899999999999999999 7999999999999988877665432      


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHH-HHHHHHHHHHHHHHHhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFF-ILTYASTVISSAAFVYI  224 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y-~~~~iG~~i~p~v~~~l  224 (296)
                                       +.+.+++...+.++..|...+....++.+. |++ .|+++.+.++ ++..+|..++|.++|++
T Consensus       292 -----------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~-~~~~~q~~~~~~~~g~g~~~g~~~~G~l  352 (382)
T TIGR00902       292 -----------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGS-EIAKLQALYNALAMGGLIAIFTAFAGFI  352 (382)
T ss_pred             -----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             345677778999999999999999999987 744 5778888865 46678999999999999


Q ss_pred             hccccchhhHHHHHHHHHHHHHH
Q 045564          225 EDNLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       225 ~~~~gw~~~F~i~~~~~~~~~~~  247 (296)
                      .|.+|+ ..|++.+++.++++++
T Consensus       353 ~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       353 YPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHhccH-HHHHHHHHHHHHHHHH
Confidence            999886 5677777766665543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.31  E-value=2.4e-10  Score=111.84  Aligned_cols=168  Identities=14%  Similarity=0.129  Sum_probs=135.3

Q ss_pred             H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchH--HHHHHHHHHHHHHHHHHHhhccc
Q 045564           65 T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSF--QVIWISSFISLLGTILLDSTATF  141 (296)
Q Consensus        65 ~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~--~~i~i~~~l~~ig~~~la~~~~~  141 (296)
                      + +..++.+....|.++++|++..+...+..+..+...++.+++|++.|| +|-|  ++++++.+++.+-.+.-.+ .+.
T Consensus       294 ~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~~~~i~~~g~~-G~~  371 (477)
T PF11700_consen  294 SDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLILWIIIPLYGLF-GFW  371 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHHH-Hhh
Confidence            7 888888999999999999999999989999999999999999999999 7988  8888887766432222111 101


Q ss_pred             cCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 045564          142 DSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAF  221 (296)
Q Consensus       142 p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~  221 (296)
                      +...           .   ..+.+.+++.-++.|+..|+.++..-++.+++.|+ ++.+.+|++|.+..-..+.+||++.
T Consensus       372 ~~~~-----------g---~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~-g~e~efFgly~i~gk~ss~lGPll~  436 (477)
T PF11700_consen  372 PSFF-----------G---LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP-GREAEFFGLYAITGKASSWLGPLLF  436 (477)
T ss_pred             hccc-----------C---cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence            1100           0   12345677777789999999999999999999994 4679999999999999999999999


Q ss_pred             Hhhhcccc-chhhHHHHHHHHHHHHHHHH
Q 045564          222 VYIEDNLS-WRLGSGLNIAANLAGVVIFL  249 (296)
Q Consensus       222 ~~l~~~~g-w~~~F~i~~~~~~~~~~~~~  249 (296)
                      |.+.+.+| -|+++....++.+++++++.
T Consensus       437 g~i~~~tg~~r~g~~~l~~lf~~gl~ll~  465 (477)
T PF11700_consen  437 GLITDATGSQRYGFLFLLVLFLIGLILLF  465 (477)
T ss_pred             HHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence            99998876 78999888888877777653

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.30  E-value=6.3e-11  Score=113.13  Aligned_cols=164  Identities=10%  Similarity=0.065  Sum_probs=119.3

Q ss_pred             HHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh---cchHH-HHHHHHHHHHHHHHHHHhhccccC
Q 045564           68 EGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSF---LGSFQ-VIWISSFISLLGTILLDSTATFDS  143 (296)
Q Consensus        68 y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~---iGR~~-~i~i~~~l~~ig~~~la~~~~~p~  143 (296)
                      .....+++.|+++++|++..+++.+.++..+...+..++.|+++||.   +|||| .++++.+...++.+++...   |.
T Consensus        16 ~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~---~~   92 (437)
T TIGR00792        16 AIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTT---PD   92 (437)
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhC---CC
Confidence            33556788899999999999999999999999999999999999983   58855 5667777777766655432   22


Q ss_pred             CCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 045564          144 LRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVY  223 (296)
Q Consensus       144 ~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~  223 (296)
                      ..              .......+++.+++.+++.+....+..++.+|+.+++++|.+..++.....++|+.+++.+.+.
T Consensus        93 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~  158 (437)
T TIGR00792        93 FS--------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLP  158 (437)
T ss_pred             CC--------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            10              0112344555667777887777777788888988655578888888778888887777665554


Q ss_pred             hh-------ccccchhhHHHHHHHHHHHHHHH
Q 045564          224 IE-------DNLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       224 l~-------~~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      +.       +..+|++.+.+.+++..+..++.
T Consensus       159 l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~  190 (437)
T TIGR00792       159 LVSYFGGGDDKFGWFMFALVLALIGVVSLIIC  190 (437)
T ss_pred             HHHHhCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence            43       24589999888877665554443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.30  E-value=3e-10  Score=108.03  Aligned_cols=153  Identities=12%  Similarity=0.086  Sum_probs=117.2

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----chHH-HHHHHHHHHHHHHHHHHhhccccC
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFL-----GSFQ-VIWISSFISLLGTILLDSTATFDS  143 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~i-----GR~~-~i~i~~~l~~ig~~~la~~~~~p~  143 (296)
                      ...-+|.|+.+ .|+|.++.+.+..+...  .+..++.|+++|| +     |||| .+.++.++..++..++.+..  + 
T Consensus        18 ~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~--~-   90 (402)
T PRK11902         18 TSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAASIAAMAFCP--P-   90 (402)
T ss_pred             HHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHHHHHHHHhcC--c-
Confidence            45677888875 59999999988666554  6889999999999 7     8876 67777777766666554431  1 


Q ss_pred             CCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 045564          144 LRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVY  223 (296)
Q Consensus       144 ~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~  223 (296)
                                       ..+.+.+++..++.++..+...+...++..|.+|+ ++|+++.++..++.++|..+++.+.++
T Consensus        91 -----------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~-~~r~~~~~~~~~g~~~g~i~g~~l~~~  152 (402)
T PRK11902         91 -----------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP-EERGAGAAVKVLGYRLAMLVSGGLALW  152 (402)
T ss_pred             -----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-hhhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence                             12345556666667788888889999999999984 468899998888889999999999998


Q ss_pred             hhcc-ccchhhHHHHHHHHHHHHHH
Q 045564          224 IEDN-LSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       224 l~~~-~gw~~~F~i~~~~~~~~~~~  247 (296)
                      +.+. .|||..|++.++..++..+.
T Consensus       153 l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        153 LADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHH
Confidence            8875 59999999988765554443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.29  E-value=1.8e-10  Score=112.52  Aligned_cols=179  Identities=17%  Similarity=0.058  Sum_probs=120.1

Q ss_pred             hHHHh-HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh---hcchHHHHHHH-HHHHHHHHHHHHhhcc
Q 045564           66 LGEGW-VANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADS---FLGSFQVIWIS-SFISLLGTILLDSTAT  140 (296)
Q Consensus        66 ~~y~~-~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr---~iGR~~~i~i~-~~l~~ig~~~la~~~~  140 (296)
                      ..|+. .++++.|+ +++|.+...++.+..+..+...+..++.|++|||   .+||||.++++ .+...++.+++..+..
T Consensus        18 ~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~   96 (477)
T TIGR01301        18 FGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD   96 (477)
T ss_pred             HHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence            34444 44555554 7899999999999999999999999999999994   27999998875 5555555555544321


Q ss_pred             ccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccch-hhHHHHHHHHHHHHHHHHHH
Q 045564          141 FDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQ-GIFFNWFFILTYASTVISSA  219 (296)
Q Consensus       141 ~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r-~~~f~~~y~~~~iG~~i~p~  219 (296)
                      ......      +.............+.++..+.-++.....+...++++|+.|++++| +.++++.....++|+.+|+.
T Consensus        97 ~~~~~~------~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~  170 (477)
T TIGR01301        97 IGHLFG------DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYA  170 (477)
T ss_pred             hhhhcc------ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            100000      00000000111233445555666778888888999999999955433 57888899999999999999


Q ss_pred             HHHhh--hcc-------------ccchhhHHHHHHHHHHHHHHHHhC
Q 045564          220 AFVYI--EDN-------------LSWRLGSGLNIAANLAGVVIFLSG  251 (296)
Q Consensus       220 v~~~l--~~~-------------~gw~~~F~i~~~~~~~~~~~~~~~  251 (296)
                      ++++.  .+.             .+.++.|++.++++++..++.+..
T Consensus       171 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~  217 (477)
T TIGR01301       171 AGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSA  217 (477)
T ss_pred             HHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeee
Confidence            88765  211             156888999888777766654443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.28  E-value=1.9e-10  Score=108.56  Aligned_cols=149  Identities=13%  Similarity=-0.031  Sum_probs=109.5

Q ss_pred             HHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchH----HHHHHHHHHHHHHHHHHHhhcccc
Q 045564           67 GEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSF----QVIWISSFISLLGTILLDSTATFD  142 (296)
Q Consensus        67 ~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~----~~i~i~~~l~~ig~~~la~~~~~p  142 (296)
                      .......++.|+ +++|.|..+.+++++++.+...++.+++|+++|| +||+    +.+.+...+..+   ......   
T Consensus        20 ~g~~~p~l~~~l-~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~---~~~~~~---   91 (382)
T PRK11128         20 YGVFLPFWSVWL-KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLFAV---AFWFGA---   91 (382)
T ss_pred             HHHHhhhHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHHHH---HHHHhc---
Confidence            333456777888 4589999999999999999999999999999999 7984    333222221111   111110   


Q ss_pred             CCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 045564          143 SLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFV  222 (296)
Q Consensus       143 ~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~  222 (296)
                                         .+.+.+++.|++.+++.+...+...++..+..+   +|+..++...+..++|..+||.+++
T Consensus        92 -------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~---~~~~a~~~~~~~~~lg~~igp~lgg  149 (382)
T PRK11128         92 -------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQK---QIGLDYGKVRLWGSIAFVIGSALTG  149 (382)
T ss_pred             -------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHHh---hccCCcchHHHHHHHHHHHHHHHHH
Confidence                               135677788999999888888887777776532   3556677767788999999999999


Q ss_pred             hhhccccchhhHHHHHHHHHHHH
Q 045564          223 YIEDNLSWRLGSGLNIAANLAGV  245 (296)
Q Consensus       223 ~l~~~~gw~~~F~i~~~~~~~~~  245 (296)
                      ++.+++|||..|++.++..++..
T Consensus       150 ~l~~~~g~~~~f~~~~~~~~~~~  172 (382)
T PRK11128        150 KLVSWFGEQAILWILTAGVASML  172 (382)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHH
Confidence            99999999999988776544443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.28  E-value=6.9e-11  Score=114.92  Aligned_cols=145  Identities=14%  Similarity=0.133  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHH
Q 045564           90 ALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYS  169 (296)
Q Consensus        90 ~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~  169 (296)
                      +.+++++.++.++|..++|+++|| +|||.++.++.++..++.++..++...                    ....++++
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~--------------------~~~e~li~  121 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSA--------------------PSFEMLIL  121 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHh--------------------hhHHHHHH
Confidence            457889999999999999999999 799999999999888887777766422                    23568999


Q ss_pred             HHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHH-Hhhh-ccccchhhHHHHHHHHHHHHH-
Q 045564          170 GIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAF-VYIE-DNLSWRLGSGLNIAANLAGVV-  246 (296)
Q Consensus       170 ~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~-~~l~-~~~gw~~~F~i~~~~~~~~~~-  246 (296)
                      +|++.|+..|......+-++.|.-| ++.||..-....++.++|.+++..++ ..+. +...|++.+.+..+..++.++ 
T Consensus       122 GR~i~Gl~~gl~~~~~pmyl~E~sP-~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~  200 (485)
T KOG0569|consen  122 GRLIVGLACGLSTGLVPMYLTEISP-KNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL  200 (485)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhhcCh-hhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999 45788877778888889988885443 3443 445799999988885555443 


Q ss_pred             -HHHhCCCchh
Q 045564          247 -IFLSGKHFYF  256 (296)
Q Consensus       247 -~~~~~~~~~~  256 (296)
                       .+++++|||.
T Consensus       201 l~~~PESPk~L  211 (485)
T KOG0569|consen  201 LPFLPESPKYL  211 (485)
T ss_pred             HhcCCCCcchH
Confidence             4578899997

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.26  E-value=2.3e-10  Score=111.76  Aligned_cols=162  Identities=9%  Similarity=-0.061  Sum_probs=104.5

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHH-----HHHHHHHHHHHHHHHHHhhcc
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQ-----VIWISSFISLLGTILLDSTAT  140 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~-----~i~i~~~l~~ig~~~la~~~~  140 (296)
                      ..++...+++.|+.+++|++..+++.+.++..++..++.+++|+++|| +|||+     ...........+...+.+.  
T Consensus       267 ~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~~~l~~i~~~~~~--  343 (476)
T PLN00028        267 VELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIVQTLGGVFCIWLG--  343 (476)
T ss_pred             HHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHHHHHHHHHHHHhc--
Confidence            445566778999998999999999999999999999999999999999 78762     2221111111111111111  


Q ss_pred             ccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 045564          141 FDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAA  220 (296)
Q Consensus       141 ~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v  220 (296)
                        ..                 .+.....+..++.+++.+...+...+...+..| + .++...++.+.+.++|+.++|.+
T Consensus       344 --~~-----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~-~~g~~~g~~~~~g~lg~~i~~~l  402 (476)
T PLN00028        344 --RA-----------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-R-SLGVISGLTGAGGNVGAVLTQLL  402 (476)
T ss_pred             --cc-----------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-h-hchhhhhhhhccccHHHHHHHHH
Confidence              10                 112333344445555555555555666666655 3 57888888777777777777765


Q ss_pred             HHhhhccccchhhHHHHHHHHHHHHHHHHhCC
Q 045564          221 FVYIEDNLSWRLGSGLNIAANLAGVVIFLSGK  252 (296)
Q Consensus       221 ~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~~  252 (296)
                      .+ ..+..+|+.+|++.+++.+++.++.+..+
T Consensus       403 ~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        403 FF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            44 22344699999998887777766655444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.25  E-value=6.4e-10  Score=105.14  Aligned_cols=146  Identities=10%  Similarity=-0.014  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH-HHHHHHHHhhccccCCCCCc
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS-LLGTILLDSTATFDSLRPQR  148 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~-~ig~~~la~~~~~p~~~~~~  148 (296)
                      ...+++.|+ +++|.|..+.+.+.+++.....+++++.|+++|| +||++.......+. .+..+.+....         
T Consensus        23 ~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~~~~~~~~---------   91 (382)
T TIGR00902        23 FLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFAAAFSAGA---------   91 (382)
T ss_pred             HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHhh---------
Confidence            446677777 5789999999999999999999999999999999 79854332221111 11111111111         


Q ss_pred             cCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 045564          149 CDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNL  228 (296)
Q Consensus       149 c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~  228 (296)
                                   .+.+.+++.+.+.+.+.+...|...++..+ ++  ++|+..++......++|..++|.+++++.+.+
T Consensus        92 -------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~--~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~  155 (382)
T TIGR00902        92 -------------HNAWLLFIAIGLFALFFSAGMPIGDALANT-WQ--KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF  155 (382)
T ss_pred             -------------hhHHHHHHHHHHHHHHHccchhHHHHHHHH-HH--HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                         135677788888888888777877777554 33  35677888888999999999999999999999


Q ss_pred             cchhhHHHHHHHHH
Q 045564          229 SWRLGSGLNIAANL  242 (296)
Q Consensus       229 gw~~~F~i~~~~~~  242 (296)
                      |||..|++..+..+
T Consensus       156 g~~~~f~~~~~~~~  169 (382)
T TIGR00902       156 DEQNILAILTAGLA  169 (382)
T ss_pred             ChhHHHHHHHHHHH
Confidence            99999988765533

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.24  E-value=2.5e-10  Score=109.96  Aligned_cols=163  Identities=15%  Similarity=0.020  Sum_probs=106.7

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ..++...+++.|+++..|++..+++++...+.+...++.+++|+++|| +|+++....+.++..+..+........+.  
T Consensus       266 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  342 (438)
T TIGR00712       266 LRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLVTIAVIVYWMNPA--  342 (438)
T ss_pred             HHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHHHHHHHHHHhcCC--
Confidence            667788899999999899999999999999999999999999999999 66543222333222211111110000010  


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHH-HHHHHHHHhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYAST-VISSAAFVYI  224 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~-~i~p~v~~~l  224 (296)
                                      .+........++.+.+..+..........|.+|+ +.|+++.++++...++|+ .++|.+.|++
T Consensus       343 ----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~gg~~~gp~l~G~l  405 (438)
T TIGR00712       343 ----------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPK-KAAGTAAGFTGLFGYLGGSVAASAIVGYT  405 (438)
T ss_pred             ----------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh-hheeeehhhhchHHHhhhhhhcchhHHHH
Confidence                            0112222333334433222222233456788884 468889998887778775 6899999999


Q ss_pred             hccccchhhHHHHHHHHHHHHHHH
Q 045564          225 EDNLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       225 ~~~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      .+..||...|++..++.+++++..
T Consensus       406 ~~~~g~~~~~~~~~~~~~~~~~~~  429 (438)
T TIGR00712       406 VDFFGWDGGFMVMIGGSILAVILL  429 (438)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHH
Confidence            998899999988777665555443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.24  E-value=7.5e-10  Score=104.55  Aligned_cols=158  Identities=13%  Similarity=0.051  Sum_probs=108.3

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ..+....++++|+.+.+|.+..+++.+.+...++..++.++.|+++|| +|||+.+.++.++..++.+++....  +   
T Consensus       214 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~~~~~~~~--~---  287 (382)
T PRK10091        214 GVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLALLMLFFFG--G---  287 (382)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHHHHHHHHH--h---
Confidence            444455677788888899999999999999999999999999999999 7999999988887777665443221  0   


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                       +....++..++.++|.++..+.......+..++++.++..  ..+...++|..+||.++|++.
T Consensus       288 -----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~  348 (382)
T PRK10091        288 -----------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMML  348 (382)
T ss_pred             -----------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHH
Confidence                             1123333444445554444443333333333323233433  235667899999999999998


Q ss_pred             cc-ccchhhHHHHHHHHHHHHHHH
Q 045564          226 DN-LSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       226 ~~-~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      +. .+|++.+.+.++..+++...+
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        349 TLGLAYNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             HcccCcchHHHHHHHHHHHHHHHH
Confidence            85 589999998877665555443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.22  E-value=9e-10  Score=105.16  Aligned_cols=142  Identities=9%  Similarity=0.011  Sum_probs=105.9

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .++......+.|.+..++ +....+.+..+..++..++.++.++++|| +|||+++.++.++..++.+.+.+..      
T Consensus       237 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~------  308 (437)
T TIGR00792       237 AFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVLGYLIFFFAG------  308 (437)
T ss_pred             HHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcc------
Confidence            444333344445554555 45566677777888899999999999999 7999999999888877766554321      


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCC------ccchhhHHHHHHHHHHHHHHHHHH
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEI------PQHQGIFFNWFFILTYASTVISSA  219 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~------~~~r~~~f~~~y~~~~iG~~i~p~  219 (296)
                                      .+...+++..++.+++.+...+...++++|..|.      +++++..++++++...+|..+++.
T Consensus       309 ----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~  372 (437)
T TIGR00792       309 ----------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGF  372 (437)
T ss_pred             ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHH
Confidence                            1234455666778888888888899999988751      235688899999999999999999


Q ss_pred             HHHhhhccccch
Q 045564          220 AFVYIEDNLSWR  231 (296)
Q Consensus       220 v~~~l~~~~gw~  231 (296)
                      +.|++.+..||.
T Consensus       373 i~g~ll~~~G~~  384 (437)
T TIGR00792       373 LVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHcCCC
Confidence            999998776663

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.22  E-value=2.8e-10  Score=105.18  Aligned_cols=147  Identities=9%  Similarity=0.084  Sum_probs=103.6

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHH--HHHHHHHHHHhhccccC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSF--ISLLGTILLDSTATFDS  143 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~--l~~ig~~~la~~~~~p~  143 (296)
                      ..++...+++.|+.+.+|.+..+++...+...++..++.+++|+++||..+||+.......  ...++......   .+.
T Consensus       231 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  307 (379)
T TIGR00881       231 VRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL---NPA  307 (379)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc---Ccc
Confidence            5566677889999999999999999999999999999999999999984344443222111  11111111110   000


Q ss_pred             CCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 045564          144 LRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVY  223 (296)
Q Consensus       144 ~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~  223 (296)
                                        .+....++..++.++...+..+....+..|.+|+ +.|++..++++...++|..++|.+.|+
T Consensus       308 ------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~~~~~~g~  368 (379)
T TIGR00881       308 ------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPK-KAAGTAAGFVGFFAYLGGILAGLPLGY  368 (379)
T ss_pred             ------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc-chhHHHHHHHHHhhhhhhhhhhhhHHH
Confidence                              1223334444555555555556667788899984 478999999999999999999999999


Q ss_pred             hhccccchhhH
Q 045564          224 IEDNLSWRLGS  234 (296)
Q Consensus       224 l~~~~gw~~~F  234 (296)
                      +.+.+||++.|
T Consensus       369 l~~~~g~~~~f  379 (379)
T TIGR00881       369 LADGFGWAGAF  379 (379)
T ss_pred             HHHhhcccccC
Confidence            99999998765

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.21  E-value=9.4e-10  Score=101.31  Aligned_cols=140  Identities=13%  Similarity=0.048  Sum_probs=113.0

Q ss_pred             hHHHhH-HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCC
Q 045564           66 LGEGWV-ANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        66 ~~y~~~-~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~  144 (296)
                      .+++.. ...+.|.++.+|.+..+.+.+.....++..++.++.|+++|| +|||+.+..+.++..++...+....     
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----  298 (365)
T TIGR00900       225 VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIGLAILVVGLTP-----  298 (365)
T ss_pred             HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHhhc-----
Confidence            444444 566777777799999999999999999999999999999999 7999998887666665554433221     


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                                       .+...+++..++.+++.+...+...+++.|.+| ++.|++.+++++...++|..++|.+.|++
T Consensus       299 -----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~g~l  360 (365)
T TIGR00900       299 -----------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVP-AELLGRVFGAQFSLSHAAWPLGLILAGPL  360 (365)
T ss_pred             -----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             013556677888899999989999999999998 44789999999999999999999999999


Q ss_pred             hcccc
Q 045564          225 EDNLS  229 (296)
Q Consensus       225 ~~~~g  229 (296)
                      .|.+|
T Consensus       361 ~~~~g  365 (365)
T TIGR00900       361 ADHLG  365 (365)
T ss_pred             HHHcC
Confidence            88654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.21  E-value=2.1e-09  Score=101.63  Aligned_cols=162  Identities=14%  Similarity=-0.026  Sum_probs=112.5

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNG-FVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~-~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~  144 (296)
                      +.....++.+.|+.+ .|++..+.+.+...... ...++.+++|++.|| +|+|+.+.++.++..+..+...... ....
T Consensus       223 ~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~-~~~~  299 (390)
T TIGR02718       223 TAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSLALLWFAQA-AFWL  299 (390)
T ss_pred             HHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHH-Hccc
Confidence            344444566778865 79999999988877754 566778999999999 7999999887766533222221111 0000


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                      .                ......+....+.+++.|...+...+...+..++++.+++.+++++...++|..++|.++|++
T Consensus       300 ~----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l  363 (390)
T TIGR02718       300 A----------------PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYL  363 (390)
T ss_pred             C----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0                011223333344455666666777777777666435789999999999999999999999999


Q ss_pred             hccccchhhHHHHHHHHHHHHH
Q 045564          225 EDNLSWRLGSGLNIAANLAGVV  246 (296)
Q Consensus       225 ~~~~gw~~~F~i~~~~~~~~~~  246 (296)
                      .+..|++..|++.+++.+++.+
T Consensus       364 ~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       364 TDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHccHHHHHHHHHHHHHHHH
Confidence            9988999999988776665543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.20  E-value=5.3e-10  Score=107.05  Aligned_cols=150  Identities=13%  Similarity=0.006  Sum_probs=103.2

Q ss_pred             hHHHhHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHH-HHHHHHHHHHHHHHHHhhccccC
Q 045564           66 LGEGWVANLMVYMIQE-FHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQV-IWISSFISLLGTILLDSTATFDS  143 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~-lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~-i~i~~~l~~ig~~~la~~~~~p~  143 (296)
                      .++++.+++|.|+++. .|.+..+++.......++..++.+++|+++|| +|||+. +.+..++..++.+ +....  + 
T Consensus       257 ~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~~~~~~-~~~~~--~-  331 (412)
T TIGR02332       257 TLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFAAAGWL-LASAT--D-  331 (412)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHHHHHHH-HHHhc--C-
Confidence            7788889999999763 47788888888999999999999999999999 797764 3333333333321 11111  0 


Q ss_pred             CCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 045564          144 LRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVY  223 (296)
Q Consensus       144 ~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~  223 (296)
                                        .. ...+++..+.++|.....+.......|.+| ++.|+.++++.+...++|+.++|.+.+.
T Consensus       332 ------------------~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~a~g~~~~~~~~g~~~~p~~~g~  391 (412)
T TIGR02332       332 ------------------HN-LIQLLGIIMASMGSFSAMAIFWTTPDQSIS-LQARAIAIAVINATGNIGSALSPFLIGI  391 (412)
T ss_pred             ------------------CH-HHHHHHHHHHHHHhhhhhhHHHhhcccccc-hHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence                              01 112222223333333333334444567777 4478999999999999999999999999


Q ss_pred             hhcccc-chhhHHHHHHH
Q 045564          224 IEDNLS-WRLGSGLNIAA  240 (296)
Q Consensus       224 l~~~~g-w~~~F~i~~~~  240 (296)
                      +.+..| |+++|++.++.
T Consensus       392 i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       392 LKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             ccccCCCCchhHHHHHHH
Confidence            998774 99998876653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.20  E-value=1.8e-09  Score=102.92  Aligned_cols=147  Identities=12%  Similarity=0.013  Sum_probs=104.4

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ..+.+..+++.|+.+ .|.+..+.+.+.+...++..++.+++|+++|| +|||+.+..+.++..++.+.+...   +.  
T Consensus       246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~---~~--  318 (426)
T PRK12307        246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRI---PQ--  318 (426)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHH---cc--
Confidence            444466778888875 69999888888888899999999999999999 799999988887665544333221   10  


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                      .....+....+..+.+..+..+..+.++.|.+|+ +.|+++.++.+...++|+.++|.+.+++.
T Consensus       319 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~~~~~gp~~~g~l~  381 (426)
T PRK12307        319 ----------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPL-EVRGLGTGLIYNLAATSGTFNSMAATWLG  381 (426)
T ss_pred             ----------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcH-HHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence                            0111111111222222233445677888999994 47899999988888999999999999999


Q ss_pred             ccccchhhHHH
Q 045564          226 DNLSWRLGSGL  236 (296)
Q Consensus       226 ~~~gw~~~F~i  236 (296)
                      +.+|+....++
T Consensus       382 ~~~g~~~~~~~  392 (426)
T PRK12307        382 ITMGLGAALTF  392 (426)
T ss_pred             HcccHHHHHHH
Confidence            98886554333

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.19  E-value=2.2e-09  Score=101.80  Aligned_cols=177  Identities=14%  Similarity=-0.002  Sum_probs=132.9

Q ss_pred             CCchhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Q 045564           51 GGRTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFIS  128 (296)
Q Consensus        51 ~~~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~  128 (296)
                      ++|+.........+ . +.|...+|+.+++++..|+|....+++...+.++..++.+++|+++||  +.|+++.....+.
T Consensus       209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~  286 (394)
T COG2814         209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLL  286 (394)
T ss_pred             cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHH
Confidence            44544433333333 5 888888999999999999999999999999999999999999999999  8888888887777


Q ss_pred             HHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHH
Q 045564          129 LLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFI  208 (296)
Q Consensus       129 ~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~  208 (296)
                      .+..+.+.+..                      .+....++..++.++..+........-.++..|+  .++...+++.-
T Consensus       287 a~~~l~l~~~~----------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~--~~~~a~sl~~a  342 (394)
T COG2814         287 ALALLALTFTG----------------------ASPALALALLFLWGFAFSPALQGLQTRLARLAPD--AADLAGSLNVA  342 (394)
T ss_pred             HHHHHHHHHhc----------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC--chHHHHHHHHH
Confidence            76655554432                      1233444455555555554444445555554442  46778888888


Q ss_pred             HHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCC
Q 045564          209 LTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKH  253 (296)
Q Consensus       209 ~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~~~  253 (296)
                      +.|+|..+|..++|.+.+++|+....++.++..++++++.+...+
T Consensus       343 a~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         343 AFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999988888876654433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.19  E-value=4.3e-10  Score=106.23  Aligned_cols=176  Identities=16%  Similarity=0.085  Sum_probs=133.7

Q ss_pred             hhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHH
Q 045564           54 TALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLL  130 (296)
Q Consensus        54 ~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~i  130 (296)
                      |..+.+.+.++  . ++-+...+++.|++++++.++.+++.....+.....+.-++||+|||| +|.+|++.+.....++
T Consensus       218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~~  296 (417)
T COG2223         218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMAL  296 (417)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHHH
Confidence            34566666777  4 788889999999999999999999999999999999999999999999 7999998888888877


Q ss_pred             HHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHH
Q 045564          131 GTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILT  210 (296)
Q Consensus       131 g~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~  210 (296)
                      +..++.+..  +..             . ...+...+++..+.+.+..|.-+..+..++...||+  .-+..-++.....
T Consensus       297 ~~~~l~~~~--~~~-------------~-~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~--~~G~v~G~vga~G  358 (417)
T COG2223         297 AAALLSLFL--TGF-------------G-HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK--ETGAVTGIVGAIG  358 (417)
T ss_pred             HHHHHHccc--ccc-------------c-cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh--hhhHHHHHHHHhc
Confidence            777666542  111             0 011233444444455555665566677777777763  4567777778888


Q ss_pred             HHHHHHHHHHHHhhhcccc-chhhHHHHHHHHHHHHHHH
Q 045564          211 YASTVISSAAFVYIEDNLS-WRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       211 ~iG~~i~p~v~~~l~~~~g-w~~~F~i~~~~~~~~~~~~  248 (296)
                      ++|+..-|...+...+.+| +...|++.....++++++.
T Consensus       359 ~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~  397 (417)
T COG2223         359 GLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLT  397 (417)
T ss_pred             cccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            8998888999999988887 8888998888777666654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.17  E-value=1.9e-09  Score=102.05  Aligned_cols=157  Identities=10%  Similarity=0.028  Sum_probs=115.3

Q ss_pred             hHHHhHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhcccc
Q 045564           66 LGEGWVANLMVYMIQEF---HITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFD  142 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~l---g~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p  142 (296)
                      .+.......+.|+++.+   +.+....+.+.++..+...++.+..|++.|| +|||+.+.++.++..++..+.....   
T Consensus       230 ~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l~~~~~~~~~---  305 (396)
T TIGR00882       230 VYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSVRIIGSSFAT---  305 (396)
T ss_pred             HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHhcC---
Confidence            33334456778887766   4455666777787888888888999999999 7999999998888877665543321   


Q ss_pred             CCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHH-HHHHHHHHHHHHHHHH
Q 045564          143 SLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNW-FFILTYASTVISSAAF  221 (296)
Q Consensus       143 ~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~-~y~~~~iG~~i~p~v~  221 (296)
                                          +...+++.+++.+++.+........+..+.++++ .+++.++. ++.+..+|..++|.+.
T Consensus       306 --------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~at~~~~~~~~~~~lg~~~~~~l~  364 (396)
T TIGR00882       306 --------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVR-LSATIYLIGFQFAKQLAMIFLSTLA  364 (396)
T ss_pred             --------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-eEEEeehHHHHHHHHHHHHHHHHhH
Confidence                                2234556677777776666555666677777744 55666655 5678899999999999


Q ss_pred             HhhhccccchhhHHHHHHHHHHHHHH
Q 045564          222 VYIEDNLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       222 ~~l~~~~gw~~~F~i~~~~~~~~~~~  247 (296)
                      |++.+..||+..|.+.+++.+++.++
T Consensus       365 G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       365 GNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            99999899999999988876665544

>TIGR00896 CynX cyanate transporter

Probab=99.17  E-value=2.3e-09  Score=99.93  Aligned_cols=138  Identities=11%  Similarity=0.019  Sum_probs=106.6

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-chHHHHHHHHHHHHHHHHHHHhhccccCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFL-GSFQVIWISSFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~i-GR~~~i~i~~~l~~ig~~~la~~~~~p~~  144 (296)
                      .+++...+++.|+++ .|.+..+++.+.+...++..++.++.|+++|| + +||+.+.++.++..++.+.+.+..   . 
T Consensus       212 ~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~---~-  285 (355)
T TIGR00896       212 LYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQLVGLCGLLFAP---M-  285 (355)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHHHHHHHHHhh---h-
Confidence            677777889999864 79999999999999999999999999999999 7 567777777777777766554321   0 


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                                       ..  .. ...++.|++.|...+...+...+..+++++++..+++.+...++|..++|.+.|++
T Consensus       286 -----------------~~--~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l  345 (355)
T TIGR00896       286 -----------------HG--LW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL  345 (355)
T ss_pred             -----------------hH--HH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             11  11 13457788888888887777776666444667788877777788889999999999


Q ss_pred             hcccc
Q 045564          225 EDNLS  229 (296)
Q Consensus       225 ~~~~g  229 (296)
                      .|.+|
T Consensus       346 ~~~~g  350 (355)
T TIGR00896       346 HDISG  350 (355)
T ss_pred             HHHhc
Confidence            98775

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.16  E-value=5.6e-09  Score=97.42  Aligned_cols=151  Identities=12%  Similarity=0.076  Sum_probs=108.3

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .+++...+.+.|+.+++|.++.+++.+.....++..++.+++|+++|| +|||+.+.++.++..++.+++..... +.  
T Consensus       221 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--  296 (385)
T TIGR00710       221 GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAVSAVLLEITAI-LG--  296 (385)
T ss_pred             HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHH-hc--
Confidence            556666677888888999999999999999999999999999999999 79999999888777776665554321 10  


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                     ......+++..++.+++.+...+.......|.+| + ++++..++++.....++.+.+.+.+.+.
T Consensus       297 ---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~-~~g~~~~~~~~~~~~~g~i~~~~~~~~~  359 (385)
T TIGR00710       297 ---------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-H-VAGTASALFGTLRLVLGAIVGYLVSLIH  359 (385)
T ss_pred             ---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-c-cchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                           0122344455667788888888888888888887 3 5778888877666654444444455666


Q ss_pred             ccccchhhHHHH
Q 045564          226 DNLSWRLGSGLN  237 (296)
Q Consensus       226 ~~~gw~~~F~i~  237 (296)
                      ++.+|...+...
T Consensus       360 ~~~~~~~~~~~~  371 (385)
T TIGR00710       360 GNTAWPMSLSCL  371 (385)
T ss_pred             ccChHHHHHHHH
Confidence            555555444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.16  E-value=5.4e-09  Score=99.26  Aligned_cols=155  Identities=15%  Similarity=0.060  Sum_probs=114.3

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ..+......+.|+.+++|.+..+.+.......++..++.++.|+++|| +|||+.+.++.++..+|.+++.+....+   
T Consensus       230 ~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~~~~~~~~~~~---  305 (406)
T PRK15402        230 PLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGLLLAALATVIS---  305 (406)
T ss_pred             HHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence            444555667888888899999988887777777888999999999999 7999999998888877777665542100   


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                     ..+...++++.++.++|.+...+..........+  +.|++..+.+++...+|..+|+.+.+++.
T Consensus       306 ---------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~g~~~~~~l~  368 (406)
T PRK15402        306 ---------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD--VSKGTVSAAMGMLSMLIFTVGIELSKHAY  368 (406)
T ss_pred             ---------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc--ccccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                           0123445667778888888777666555443333  46889999999999999999999999998


Q ss_pred             ccccchhhHHHHHHHH
Q 045564          226 DNLSWRLGSGLNIAAN  241 (296)
Q Consensus       226 ~~~gw~~~F~i~~~~~  241 (296)
                      +..++....++..+..
T Consensus       369 ~~~~~~~~~~~~~~~~  384 (406)
T PRK15402        369 LGGGNGLFNLFNLANG  384 (406)
T ss_pred             cCCchHHHHHHHHHHH
Confidence            8777665444444433

>PRK10504 putative transporter; Provisional

Probab=99.16  E-value=4.2e-09  Score=101.90  Aligned_cols=143  Identities=8%  Similarity=-0.092  Sum_probs=108.7

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ++.......+.|++..+|.+..+++.......++..++.++.|+++|| +|||+++.++.++..++.+++.+..  +.  
T Consensus       276 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~--~~--  350 (471)
T PRK10504        276 GSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLALVSLLFMLVA--LL--  350 (471)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHhcc--cc--
Confidence            433344556778877899999999988888888888888999999999 7999999988887777655544321  00  


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                      .....+.+..++.|++.+...+...++..+.+|++ .++..++++++...+|..+|+.+++.+.
T Consensus       351 ----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~g~~ig~~i~g~ll  413 (471)
T PRK10504        351 ----------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDN-LASSGNSLLSMIMQLSMSIGVTIAGLLL  413 (471)
T ss_pred             ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-hccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            11223334456677888877888888888988844 7899999999999999999999998887


Q ss_pred             ccccc
Q 045564          226 DNLSW  230 (296)
Q Consensus       226 ~~~gw  230 (296)
                      +..|+
T Consensus       414 ~~~g~  418 (471)
T PRK10504        414 GLFGQ  418 (471)
T ss_pred             HHhhh
Confidence            65554

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.15  E-value=6.2e-09  Score=98.29  Aligned_cols=153  Identities=9%  Similarity=-0.030  Sum_probs=115.0

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .+.+...+++.|+. +.|.+..+.+.+.++...+..+..++.|++.|| +|+|+.+.++.+...++.+.+....      
T Consensus       220 ~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~~~~~~~~~~------  291 (382)
T PRK11128        220 SHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVVRWGLMGSTT------  291 (382)
T ss_pred             HhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHhhh------
Confidence            44445567788885 589999998988888888888889999999999 7999999998888877665543321      


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHH-HHHHHHHHHHHHHHHhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFF-ILTYASTVISSAAFVYI  224 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y-~~~~iG~~i~p~v~~~l  224 (296)
                                       +.+.+++..++.|++.+...+....+..++.+ + ++++..+++. +...+|..+||.++|++
T Consensus       292 -----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~ig~~i~G~l  352 (382)
T PRK11128        292 -----------------ALPWLIVIQILHCGTFTVCHLAAMRYIAARPG-S-EVIRLQALYSALAMGGSIAIMTVLSGFL  352 (382)
T ss_pred             -----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             34556777888888888888888888777643 3 4567777764 55667888999999999


Q ss_pred             hccccchhhHHHHHHHHHHHHH
Q 045564          225 EDNLSWRLGSGLNIAANLAGVV  246 (296)
Q Consensus       225 ~~~~gw~~~F~i~~~~~~~~~~  246 (296)
                      .|.+|+ ..|++.+++.+++++
T Consensus       353 ~~~~g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        353 YQHLGA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHhccH-HHHHHHHHHHHHHHH
Confidence            998887 456655555444443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.15  E-value=4e-09  Score=101.97  Aligned_cols=152  Identities=11%  Similarity=0.074  Sum_probs=107.3

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcC
Q 045564           76 VYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSL  155 (296)
Q Consensus        76 ~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~  155 (296)
                      +++.+++|.+...+........+...++.+++|+++|| +|||+.++++.++..++.++++... .+.            
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~-~~~------------  360 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAF-YTQ------------  360 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHH-hcC------------
Confidence            34456789888777777777788889999999999999 7999999999998888877765432 100            


Q ss_pred             cCCCCchhhHHHHHHHHHHHHhhch-hhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHH------hhhccc
Q 045564          156 CKAPSKVQFAVLYSGIALACLGLGG-LRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFV------YIEDNL  228 (296)
Q Consensus       156 ~~~~~~~~~~~l~~~~~l~gig~g~-~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~------~l~~~~  228 (296)
                           ... .....+..+.+++.+. ..+...+++.|.+|+ +.|+.+.++.+...++|..+++.+.+      ++.+..
T Consensus       361 -----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~  433 (479)
T PRK10077        361 -----APG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN-AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF  433 (479)
T ss_pred             -----ccc-HHHHHHHHHHHHHHhccccchhHHHhHhhCCh-hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc
Confidence                 011 1222333344444432 346778999999984 47999999988888888887754443      555678


Q ss_pred             cchhhHHHHHHHHHHHHHHH
Q 045564          229 SWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       229 gw~~~F~i~~~~~~~~~~~~  248 (296)
                      +|++.|++.++..+++.++.
T Consensus       434 ~~~~~~~~~~~~~~~~~~~~  453 (479)
T PRK10077        434 HNGFSYWIYGCMGVLAALFM  453 (479)
T ss_pred             cCccHHHHHHHHHHHHHHHH
Confidence            89989988777655555443

>TIGR00788 fbt folate/biopterin transporter

Probab=99.14  E-value=2.9e-09  Score=103.99  Aligned_cols=172  Identities=11%  Similarity=0.004  Sum_probs=123.0

Q ss_pred             CCchhHHHHHH-HHH--HhHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----hHHHHH
Q 045564           51 GGRTALLSRTV-TCL--TLGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLG-----SFQVIW  122 (296)
Q Consensus        51 ~~~~~~~~l~~-~~~--~~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iG-----R~~~i~  122 (296)
                      .+++....+++ ..+  ..-+.+...+..++++++|++.++.+...++..+...+-++ .|+++|| ++     ||+.++
T Consensus        22 ~~~~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~l~   99 (468)
T TIGR00788        22 FHPRVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWYLV   99 (468)
T ss_pred             CCcchHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHHHH
Confidence            34555544444 445  32255667788899999999999998888888888888776 9999999 67     677777


Q ss_pred             HHHHHHH-HHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCcc-chh
Q 045564          123 ISSFISL-LGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQ-HQG  200 (296)
Q Consensus       123 i~~~l~~-ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~-~r~  200 (296)
                      ++.++.. ++..  .++. .+                   .......+.+++.+++.+.......++..|..+++. .++
T Consensus       100 ~~~~l~~~~~~~--~l~~-~~-------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~  157 (468)
T TIGR00788       100 LSGLLGSAILYG--LLPG-KV-------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGP  157 (468)
T ss_pred             HHHHHHHHHHHH--hccc-cc-------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCC
Confidence            7766552 2211  1111 00                   112233346778899999999999999999998322 233


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Q 045564          201 IFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVV  246 (296)
Q Consensus       201 ~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~  246 (296)
                      ...++.|.+.++|..+|+.++|++.+.++|+..|++.++..++..+
T Consensus       158 ~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~  203 (468)
T TIGR00788       158 SLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF  203 (468)
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence            3556667778899999999999999989999999998876665543

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.14  E-value=4e-13  Score=129.09  Aligned_cols=147  Identities=18%  Similarity=0.242  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHH
Q 045564           88 NSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVL  167 (296)
Q Consensus        88 ~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l  167 (296)
                      ..++..+...++..+|.+++|+++|| +|||+++.++.++..+|.++..++...                    .+...+
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~~--------------------~~~~~~  105 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPSY--------------------NNFWML  105 (451)
T ss_pred             HHHHHHHHHHhhhccccccccccccc-ccccccccccccccccccccccccccc--------------------cccccc
Confidence            45678899999999999999999999 799999999999999988776654300                    134678


Q ss_pred             HHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhc---cccchhhHHHHHHHHHHH
Q 045564          168 YSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIED---NLSWRLGSGLNIAANLAG  244 (296)
Q Consensus       168 ~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~---~~gw~~~F~i~~~~~~~~  244 (296)
                      .++|++.|++.|+..+..+.++.|..|++ .|+...++......+|..++..+...+.+   +.+||+.+++..+..++.
T Consensus       106 ~~~R~~~G~~~g~~~~~~~~~~~E~~~~~-~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~  184 (451)
T PF00083_consen  106 LIGRFLIGFGIGGAYVVSPIYISEIAPPK-HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV  184 (451)
T ss_pred             ccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999999844 67888877788888888777765443322   346999998887755333


Q ss_pred             H--HHHHhCCCchh
Q 045564          245 V--VIFLSGKHFYF  256 (296)
Q Consensus       245 ~--~~~~~~~~~~~  256 (296)
                      +  ..+++++|||.
T Consensus       185 ~~~~~~~pESP~wL  198 (451)
T PF00083_consen  185 LLLRFFLPESPRWL  198 (451)
T ss_pred             ccccccccccccee
Confidence            3  23567889886

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.13  E-value=1.5e-09  Score=106.44  Aligned_cols=161  Identities=11%  Similarity=-0.018  Sum_probs=103.6

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHH------------HHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHH
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSAL------------ISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTI  133 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~------------i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~  133 (296)
                      .+|++..++|+++. ++|++..+++.            ...+..++..++.+++++++|| +|||++++++.++..++.+
T Consensus       303 ~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~~~~~~~~  380 (502)
T TIGR00887       303 AFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFFILTVLFF  380 (502)
T ss_pred             HHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHHHHHHHH
Confidence            67787777888884 67886543221            1233344556677889999999 7999999888877776665


Q ss_pred             HHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHH
Q 045564          134 LLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYAS  213 (296)
Q Consensus       134 ~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG  213 (296)
                      ++.+... +.               +  .. ..+....+...++..+..+....+.+|.+|++ .|+++.++.+....+|
T Consensus       381 ~l~~~~~-~~---------------~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~-~R~~~~g~~~~~~~~~  440 (502)
T TIGR00887       381 VLGFAYN-HL---------------S--TH-GFLAIYVLAQFFANFGPNATTFIVPGEVFPTR-YRSTAHGISAASGKAG  440 (502)
T ss_pred             HHHHHHH-hc---------------c--hh-HHHHHHHHHHHHHhcCCCchhhhhhhccCchh-HHHHHHHHHHHHhhhH
Confidence            5544310 00               0  01 11111111122222234456667789999954 7999999999999999


Q ss_pred             HHHHHHHHHhhhcc----------ccchhhHHHHHHHHHHHHHHH
Q 045564          214 TVISSAAFVYIEDN----------LSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       214 ~~i~p~v~~~l~~~----------~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      ++++|.+.+++.+.          .++...|++.+++.+++.+.+
T Consensus       441 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~  485 (502)
T TIGR00887       441 AIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT  485 (502)
T ss_pred             HHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence            99999999998773          344556777666655554433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.13  E-value=3.5e-09  Score=104.75  Aligned_cols=149  Identities=13%  Similarity=0.058  Sum_probs=122.8

Q ss_pred             HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCC
Q 045564           81 EFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPS  160 (296)
Q Consensus        81 ~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~  160 (296)
                      ++.-|+...+.+.....+-..+..+++|.++|| +.|||+++.+.++..+..+.+++......                 
T Consensus        39 ~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~~~~~L~~l~~~~~-----------------  100 (524)
T PF05977_consen   39 QLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRALVALLLAVLAFFGL-----------------  100 (524)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHHHHHHHhCc-----------------
Confidence            456778888888888999999999999999999 79999999999888776666655432111                 


Q ss_pred             chhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Q 045564          161 KVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAA  240 (296)
Q Consensus       161 ~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~  240 (296)
                       .+.+.+++..++.|++.+...|...+.+.|+.|+ ++...+.++..+..|+.-.+||.++|.+....|-.+.|.+.++.
T Consensus       101 -~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~-~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inals  178 (524)
T PF05977_consen  101 -LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK-EDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALS  178 (524)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-hhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence             2456778888999999999999999999999994 46778888899999999999999999998888888999998887


Q ss_pred             HHHHHHHHH
Q 045564          241 NLAGVVIFL  249 (296)
Q Consensus       241 ~~~~~~~~~  249 (296)
                      .++.++.+.
T Consensus       179 fl~~i~~l~  187 (524)
T PF05977_consen  179 FLISILALL  187 (524)
T ss_pred             HHHHHHHHH
Confidence            666554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.13  E-value=5.7e-09  Score=98.34  Aligned_cols=139  Identities=12%  Similarity=0.072  Sum_probs=114.8

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ........+.+.+++.++++..+++.+...+..+..++++..|++.+| +|+|+.++++..++++|..+..-++.     
T Consensus        27 ~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa~-----  100 (422)
T COG0738          27 FITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAAS-----  100 (422)
T ss_pred             HHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhhh-----
Confidence            344456678889999999999999999999999999999999999999 79999999999999999876653321     


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                     ......+++++++++.|.+..+...+++++.+.+++ .-..=.|.....+.+|+.++|++++++.
T Consensus       101 ---------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~-~a~~rlnl~q~fn~lGa~~gp~~g~~li  164 (422)
T COG0738         101 ---------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE-SAAFRLNLAQAFNGLGAILGPLLGSSLI  164 (422)
T ss_pred             ---------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch-hHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                           135678899999999999999999999999999852 1222334445556789999999998887


Q ss_pred             c
Q 045564          226 D  226 (296)
Q Consensus       226 ~  226 (296)
                      .
T Consensus       165 l  165 (422)
T COG0738         165 L  165 (422)
T ss_pred             H
Confidence            6

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.12  E-value=2.9e-09  Score=102.89  Aligned_cols=142  Identities=15%  Similarity=0.047  Sum_probs=114.5

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .+++...+++.|+++.+|.+..+++.......++..++.+++|++.|| +|||+.+.++.++..++..++.+.. .|.  
T Consensus       270 ~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~~~~~~~~~~-~~~--  345 (485)
T TIGR00711       270 GLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAVGFYWRAFTF-TPD--  345 (485)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHhccC-CCC--
Confidence            667777889999999999999999999999999999999999999999 7999999998888877776654221 110  


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                      .+...+....++.|+|.+...+.......+.+|+ +.|+++.+++++..++|+.+|+.+.+.+.
T Consensus       346 ----------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~g~~ig~~i~g~~~  408 (485)
T TIGR00711       346 ----------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP-HKIARGSSLSNFTRQLGGSIGTALITTIL  408 (485)
T ss_pred             ----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            1233455557788898888777777777787884 47899999999999999999999999887


Q ss_pred             ccc
Q 045564          226 DNL  228 (296)
Q Consensus       226 ~~~  228 (296)
                      ++.
T Consensus       409 ~~~  411 (485)
T TIGR00711       409 TNR  411 (485)
T ss_pred             HHH
Confidence            653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.12  E-value=9.2e-09  Score=95.78  Aligned_cols=164  Identities=16%  Similarity=0.217  Sum_probs=140.9

Q ss_pred             HhHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCC
Q 045564           65 TLGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        65 ~~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~  144 (296)
                      |.-......+..-+.+++|+|.+.++.+.++-.+...+..+++.+++-| +|-.+.+.++.++..+|.++=...      
T Consensus        25 R~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~------   97 (395)
T COG2807          25 RPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG------   97 (395)
T ss_pred             chhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc------
Confidence            4444445677778889999999999999999999999999999999999 899999999999999887654332      


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                                        +...++.+-.+.|.|.+..+...|+.+-+-||+  +-+...+.|..+.++|+.+++.++..+
T Consensus        98 ------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk--~~~~mtglYs~sl~~~aaLaa~lavpl  157 (395)
T COG2807          98 ------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK--RVGLMTGLYSTSLGAGAALAAALAVPL  157 (395)
T ss_pred             ------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc--chhhHHhHHHHHHHHHHHHHhhhhhHH
Confidence                              246788899999999999999999999999993  467888999999999999999999999


Q ss_pred             hccc-cchhhHHHHHHHHHHHHHHHHhCCCch
Q 045564          225 EDNL-SWRLGSGLNIAANLAGVVIFLSGKHFY  255 (296)
Q Consensus       225 ~~~~-gw~~~F~i~~~~~~~~~~~~~~~~~~~  255 (296)
                      .++. |||....+.+...+++++++++...|+
T Consensus       158 a~~~~gW~~aL~~WAl~allAl~~WlPq~~r~  189 (395)
T COG2807         158 AQHSGGWRGALGFWALLALLALLIWLPQALRE  189 (395)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            8776 799999999998888888887775444

>TIGR00895 2A0115 benzoate transport

Probab=99.12  E-value=3.7e-09  Score=98.47  Aligned_cols=133  Identities=14%  Similarity=0.015  Sum_probs=102.1

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .++....+++ ++.+++|.+..+++...+...++..++.+++|+++|| +|||+.+....+....+.+ +....      
T Consensus       265 ~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~------  335 (398)
T TIGR00895       265 GVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLLLGAVFAVL-VGSTL------  335 (398)
T ss_pred             HHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHH-HHHHh------
Confidence            5555666666 6677899999999999999999999999999999999 7999555444333332222 21111      


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                                      .+...+++..++.+++.+...+...++..|.+|+ +.|++.+++++...++|..++|.+.|++
T Consensus       336 ----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       336 ----------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT-AIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             ----------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence                            1223456667788888888899999999999994 4789999999999999999999999876

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.11  E-value=1.4e-09  Score=106.63  Aligned_cols=147  Identities=10%  Similarity=0.039  Sum_probs=117.8

Q ss_pred             HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcC
Q 045564           78 MIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCK  157 (296)
Q Consensus        78 l~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~  157 (296)
                      +.+++|+...+-+.+.+++.++.+++.+.+|.+.|| +.-.+.+....+.+.+-.++....                   
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~-------------------  131 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAV-------------------  131 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            346788888899999999999999999999999999 796666666555554422222111                   


Q ss_pred             CCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh------ccccch
Q 045564          158 APSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE------DNLSWR  231 (296)
Q Consensus       158 ~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~------~~~gw~  231 (296)
                          .+.+.+++.|+++|+..+...|+...+++..|. +++|+.-+++++.+.++|.++|.+++..+.      ...|||
T Consensus       132 ----~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~-~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~  206 (495)
T KOG2533|consen  132 ----HSFPGLIALRFLLGLFESGGWPGVVAILGNWYG-KSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWR  206 (495)
T ss_pred             ----hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcC-hhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCce
Confidence                245779999999999999999999999999998 457899999999999999999999888763      356999


Q ss_pred             hhHHHHHHHHHHHHHHHH
Q 045564          232 LGSGLNIAANLAGVVIFL  249 (296)
Q Consensus       232 ~~F~i~~~~~~~~~~~~~  249 (296)
                      |.|.|.+++.++..++.+
T Consensus       207 ~~FiI~G~i~~~~gi~~f  224 (495)
T KOG2533|consen  207 WLFIIEGVITLVLGIVVF  224 (495)
T ss_pred             eehhHHHHHHHHHHheEE
Confidence            999999987665554433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.11  E-value=6.5e-09  Score=111.05  Aligned_cols=154  Identities=12%  Similarity=0.013  Sum_probs=118.2

Q ss_pred             hHHHhHHHHHHHHHHHhCCChh-HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSI-NSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~-~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~  144 (296)
                      ..+....+++.|+.+.+|++.. +++++.+...++..++.++.|+++|| +++++.+.++.++..++.+++.+..     
T Consensus       247 ~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~-----  320 (1146)
T PRK08633        247 ISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALSLFLLPTAP-----  320 (1146)
T ss_pred             HHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHHHHHHHHhh-----
Confidence            4444567788999999999998 88999999999999999999999999 7999988888877776655544321     


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                                        +...++++.++.|++.++..+...+++.+..|++ .|+++++++++..++|..+++.+++.+
T Consensus       321 ------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~-~rg~~~~~~~~~~~lg~~~~~~~~~~l  381 (1146)
T PRK08633        321 ------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEK-ELGKVLAANNFLQNVGMLLFLALTTLF  381 (1146)
T ss_pred             ------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCcc-chhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                              2345566677888888888888899999999844 789999999999999988888777666


Q ss_pred             hc-cccchhhHHHHHHHHHHH
Q 045564          225 ED-NLSWRLGSGLNIAANLAG  244 (296)
Q Consensus       225 ~~-~~gw~~~F~i~~~~~~~~  244 (296)
                      .. .+++...|++.+.+.++.
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~  402 (1146)
T PRK08633        382 SGLGLSPAGLFYLIALVTLIG  402 (1146)
T ss_pred             HHhccCHHHHHHHHHHHHHHH
Confidence            43 234555566555544333

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.11  E-value=5.1e-10  Score=106.76  Aligned_cols=155  Identities=16%  Similarity=0.088  Sum_probs=109.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchh
Q 045564           84 ITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQ  163 (296)
Q Consensus        84 ~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~  163 (296)
                      +++...+.+..+..++..+|+++.||++|+ +|||+++...+++.++++++++++-                +.++...-
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~----------------~~~~~~~~  143 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSV----------------GTTSPLGV  143 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCC----------------CCCCCcch
Confidence            667788889999999999999999999999 7999999999999999888554432                11121134


Q ss_pred             hHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHH----HHHHHHHHHHhhhcc-----------c
Q 045564          164 FAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYA----STVISSAAFVYIEDN-----------L  228 (296)
Q Consensus       164 ~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~i----G~~i~p~v~~~l~~~-----------~  228 (296)
                      +..+..-|+++|+|.|+-.|...+..+|...+ .+|+...++.....+.    |+.++-++..-....           .
T Consensus       144 m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~-~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~  222 (538)
T KOG0252|consen  144 MMTLCFFRFLLGIGIGGDYPLSATIMSESANK-KTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDG  222 (538)
T ss_pred             hhHHHHHHHHhhccccCCCcchHHHhhhhhhh-ccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHH
Confidence            56678889999999999999999999997764 3677665553333333    444444443333221           2


Q ss_pred             cchhhHHHHHHHHHHHHHH--HHhCCCchh
Q 045564          229 SWRLGSGLNIAANLAGVVI--FLSGKHFYF  256 (296)
Q Consensus       229 gw~~~F~i~~~~~~~~~~~--~~~~~~~~~  256 (296)
                      =||..|.+.++..++.+..  -+.+++||.
T Consensus       223 vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~  252 (538)
T KOG0252|consen  223 VWRIIFGLGAVPALLVLYFRLKMPETARYT  252 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCcchhHH
Confidence            3999998887755443322  234677886

>PRK10133 L-fucose transporter; Provisional

Probab=99.10  E-value=7.3e-09  Score=100.22  Aligned_cols=153  Identities=10%  Similarity=0.018  Sum_probs=113.9

Q ss_pred             hHHHhHHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCC
Q 045564           66 LGEGWVANLMVYM-IQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        66 ~~y~~~~~l~~yl-~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~  144 (296)
                      ..++...+.+.|+ ++.+|+++.+++.....+.++..++.+++|++.|| +||||++.++.++..++.++..+.   +  
T Consensus       273 ~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~---~--  346 (438)
T PRK10133        273 AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFA---G--  346 (438)
T ss_pred             HHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHc---C--
Confidence            4555556778886 56789999999999999999999999999999999 799999998877766554433221   1  


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                                        +. ..+....+.+++.+...|...+...+.+|++...+++.  ..+ ..+|+.++|.+.|++
T Consensus       347 ------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l--~~~-~~~g~~~~~~i~G~l  404 (438)
T PRK10133        347 ------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSF--IVM-TIIGGGIVTPVMGFV  404 (438)
T ss_pred             ------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhccchhH--HhH-HhccchHHHHHHHHH
Confidence                              01 12344567899999999999999999988543333333  323 335788889999999


Q ss_pred             hcccc-chhhHHHHHHHHHHHHH
Q 045564          225 EDNLS-WRLGSGLNIAANLAGVV  246 (296)
Q Consensus       225 ~~~~g-w~~~F~i~~~~~~~~~~  246 (296)
                      .+..| -+..|++..++.+...+
T Consensus       405 ~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        405 SDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             HHhccchHHHHHHHHHHHHHHHH
Confidence            88887 68888877776554443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.08  E-value=8.2e-09  Score=99.94  Aligned_cols=174  Identities=13%  Similarity=0.069  Sum_probs=112.9

Q ss_pred             hHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHH---HHHHHH
Q 045564           55 ALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIW---ISSFIS  128 (296)
Q Consensus        55 ~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~---i~~~l~  128 (296)
                      .++...+..+  . .++....++|.|+.+.+|.+..+++...++..++..++.+++|+++|| +++|+...   ...++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~~~~~  340 (465)
T TIGR00894       262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAARKIFN  340 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHHHH
Confidence            3444444444  5 777788899999999999999999999999999999999999999999 56543211   001111


Q ss_pred             HHHH-----HHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHH
Q 045564          129 LLGT-----ILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFF  203 (296)
Q Consensus       129 ~ig~-----~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f  203 (296)
                      .++.     ..+.... ..                   .+....++...+.+.+.++..+.......|..| + .++...
T Consensus       341 ~~~~~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~-~~g~~~  398 (465)
T TIGR00894       341 GIGGLGPGIFAYALPY-LS-------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-R-FLGFIK  398 (465)
T ss_pred             HHHHHHHHHHHHHHHH-cC-------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-h-HHHHHH
Confidence            1111     1111110 00                   011222333334444444444444455556665 3 688899


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccc---cchhhHHHHHHHHHHHHHHHHhC
Q 045564          204 NWFFILTYASTVISSAAFVYIEDNL---SWRLGSGLNIAANLAGVVIFLSG  251 (296)
Q Consensus       204 ~~~y~~~~iG~~i~p~v~~~l~~~~---gw~~~F~i~~~~~~~~~~~~~~~  251 (296)
                      ++.++..++|+.++|.+.+++.+..   +|..+|.+.++..+++.+++...
T Consensus       399 g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       399 GITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             HHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            9999999999999999999987653   48888888887777766555433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.07  E-value=1.3e-09  Score=101.79  Aligned_cols=133  Identities=9%  Similarity=0.008  Sum_probs=106.4

Q ss_pred             HHhHHHHHHHHHHHhCC----ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccC
Q 045564           68 EGWVANLMVYMIQEFHI----TSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDS  143 (296)
Q Consensus        68 y~~~~~l~~yl~~~lg~----s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~  143 (296)
                      |....++.-.+....+.    +..-++.+-+.|.+...+.+++.|-+||| +|||+++.++.+..++.+++.+.+.    
T Consensus        45 ~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S~----  119 (451)
T KOG2615|consen   45 YPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALSR----  119 (451)
T ss_pred             hHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHHH----
Confidence            33344444444333333    33557889999999999999999999999 6999999999998888777766553    


Q ss_pred             CCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 045564          144 LRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVY  223 (296)
Q Consensus       144 ~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~  223 (296)
                                         ++..+.++|++.|+.-|- ...+-++++|.+++ +.|..+++....+..+|.++||.++||
T Consensus       120 -------------------~F~afv~aR~l~Gi~kgn-l~v~rAiisdV~se-k~r~l~ms~v~~a~~lGfilGPmIGgy  178 (451)
T KOG2615|consen  120 -------------------NFAAFVLARFLGGIFKGN-LSVIRAIISDVVSE-KYRPLGMSLVGTAFGLGFILGPMIGGY  178 (451)
T ss_pred             -------------------HHHHHHHHHHhhhhccCc-hHHHHHHHHhhcCh-hhccceeeeeehhhhcchhhcchhhhH
Confidence                               455677789999998884 46678899999995 478899999999999999999999999


Q ss_pred             hhc
Q 045564          224 IED  226 (296)
Q Consensus       224 l~~  226 (296)
                      +.+
T Consensus       179 la~  181 (451)
T KOG2615|consen  179 LAQ  181 (451)
T ss_pred             HHh
Confidence            987

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.06  E-value=2.3e-08  Score=95.01  Aligned_cols=151  Identities=10%  Similarity=0.142  Sum_probs=102.4

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHH-HHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCC
Q 045564           73 NLMVYMIQEFHITSINSALISNIV-NGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDI  151 (296)
Q Consensus        73 ~l~~yl~~~lg~s~~~a~~i~~~~-~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~  151 (296)
                      +.+.|+.+++|++..+.+.+.... .++..++.+++|+++|| +|||+.+.++.++..+..+.+......+         
T Consensus       231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~~l~~~~~~~~~---------  300 (402)
T PRK11902        231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVSNLGYWVLAVTP---------  300 (402)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence            344577788999999988877654 45688899999999999 7999988877766655443332211111         


Q ss_pred             CCcCcCCCCchhhHHHHHHH----HHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 045564          152 GLSLCKAPSKVQFAVLYSGI----ALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDN  227 (296)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~----~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~  227 (296)
                                .+.+.+++..    +..+++.+...+....+..+.+|.+     .++++....++|..+++.++|++.+.
T Consensus       301 ----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~G~l~~~  365 (402)
T PRK11902        301 ----------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT-----QYALLSALASVGRVYVGPTSGYLVEA  365 (402)
T ss_pred             ----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      0112333322    3455666667777777788777632     23444444567777667789999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHH
Q 045564          228 LSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       228 ~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      .||+..|.+.+++.++++++.
T Consensus       366 ~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        366 YGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             hChHHHHHHHHHHHHHHHHHH
Confidence            999999999888776665443

>PRK09848 glucuronide transporter; Provisional

Probab=99.05  E-value=1e-08  Score=98.90  Aligned_cols=143  Identities=14%  Similarity=0.116  Sum_probs=106.5

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .++......+.|+++.+|.+....+.......++..++.++.++++|| +|+|+++.++.++..++.+++.+..   .  
T Consensus       243 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i~~~~~~~~~---~--  316 (448)
T PRK09848        243 STFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTCGYLLFFWVS---V--  316 (448)
T ss_pred             HHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcC---c--
Confidence            444445556667777788877665555554456677889999999999 7999999999988888776655321   0  


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCc------cchhhHHHHHHHHHHHHHHHHHH
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIP------QHQGIFFNWFFILTYASTVISSA  219 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~------~~r~~~f~~~y~~~~iG~~i~p~  219 (296)
                                      .+.+.+++..++.++|.+...+...++.+|..|.+      ++++..++.+.+...+|..+|+.
T Consensus       317 ----------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~  380 (448)
T PRK09848        317 ----------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGS  380 (448)
T ss_pred             ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHH
Confidence                            12345566677889999999999999999988732      23577888899999999999999


Q ss_pred             HHHhhhccccc
Q 045564          220 AFVYIEDNLSW  230 (296)
Q Consensus       220 v~~~l~~~~gw  230 (296)
                      +.+.+.+..||
T Consensus       381 i~g~~l~~~G~  391 (448)
T PRK09848        381 IPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHcCC
Confidence            88887655454

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.05  E-value=1.3e-08  Score=109.07  Aligned_cols=172  Identities=11%  Similarity=-0.054  Sum_probs=119.6

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ..+++.++++.|+.+.+|.+..+++.+.+.+.++..++.++.|+++|+ .++++.+.++.++..++.+.+.+.. .....
T Consensus       240 ~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~  317 (1140)
T PRK06814        240 VGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGLFGLDLAFAS-SSVPA  317 (1140)
T ss_pred             HHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHHHHHHHHhcc-ccccc
Confidence            555667789999999999999999999999999999999999999998 5777766666655555444333320 00000


Q ss_pred             CCccCCC-CcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          146 PQRCDIG-LSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       146 ~~~c~~~-~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                      +..-... ......   .+.+.++++.++.|++.+...+...+++.+..|++ .|++.++.+++..++|..+++++.+.+
T Consensus       318 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~-~~G~v~g~~~~~~~~~~~ig~~~~g~l  393 (1140)
T PRK06814        318 EPAQLKSILVFLSK---RHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPA-HRARVIAANNVLNAAFMVAGTIILALL  393 (1140)
T ss_pred             ccccccchhhhhcc---cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcc-cceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            0000000 000000   12345666777889999998889999999999844 789999999999999999999999988


Q ss_pred             hc-cccchhhHHHHHHHHHH
Q 045564          225 ED-NLSWRLGSGLNIAANLA  243 (296)
Q Consensus       225 ~~-~~gw~~~F~i~~~~~~~  243 (296)
                      .+ ..++...|++.+++.++
T Consensus       394 ~~~~~~~~~~~~~~~~~~~~  413 (1140)
T PRK06814        394 QALGFSIPWIILFIALANLI  413 (1140)
T ss_pred             HHhccCHHHHHHHHHHHHHH
Confidence            74 34666666655554333

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.04  E-value=3.6e-09  Score=104.26  Aligned_cols=155  Identities=19%  Similarity=0.182  Sum_probs=126.3

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCC
Q 045564           73 NLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIG  152 (296)
Q Consensus        73 ~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~  152 (296)
                      .+...+.++++.+..+.+++.++..+...+..++.+.+.|| +|.|++.+.|.++..+|.++.+++.             
T Consensus        67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~g~~lssF~~-------------  132 (509)
T KOG2504|consen   67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAALGLLLSSFAT-------------  132 (509)
T ss_pred             hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHHHHHHHHHHh-------------
Confidence            34457788999999999999999999999999999999999 7999999999999999999877764             


Q ss_pred             CcCcCCCCchhhHHHHHH-HHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 045564          153 LSLCKAPSKVQFAVLYSG-IALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWR  231 (296)
Q Consensus       153 ~~~~~~~~~~~~~~l~~~-~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~  231 (296)
                                +.+.+++. =++.|+|.|.........++..|+  ++|+.+.++-..+..+|..+=|.+..++.+++|||
T Consensus       133 ----------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~--kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r  200 (509)
T KOG2504|consen  133 ----------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE--KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWR  200 (509)
T ss_pred             ----------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhH--HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcH
Confidence                      23344433 467889999999888888898886  35777777666667788888888899999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhCCC
Q 045564          232 LGSGLNIAANLAGVVIFLSGKH  253 (296)
Q Consensus       232 ~~F~i~~~~~~~~~~~~~~~~~  253 (296)
                      +.+++...+.+-.++.-...+|
T Consensus       201 ~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  201 GALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Confidence            9999988877555555555555

>PRK09669 putative symporter YagG; Provisional

Probab=99.03  E-value=5.4e-09  Score=100.83  Aligned_cols=164  Identities=11%  Similarity=0.060  Sum_probs=111.3

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh---cchHH-HHHHHHHHHHHHHHHHHhhccc
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSF---LGSFQ-VIWISSFISLLGTILLDSTATF  141 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~---iGR~~-~i~i~~~l~~ig~~~la~~~~~  141 (296)
                      .+..+..+++.|+++.+|++...++.+.++.-+...+..|+.|+++||.   +|||| .++++.+...+..+++..   .
T Consensus        24 ~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~---~  100 (444)
T PRK09669         24 VWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFY---T  100 (444)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHh---C
Confidence            4444567889999999999999999999999999999999999999992   47755 455666666665443322   2


Q ss_pred             cCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 045564          142 DSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAF  221 (296)
Q Consensus       142 p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~  221 (296)
                      |.+.              .......+++...+.+++......+..++.+|+.++.++|.+..++.....++|..+++.+.
T Consensus       101 p~~~--------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~  166 (444)
T PRK09669        101 PDFG--------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIA  166 (444)
T ss_pred             CCCC--------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3211              01123334444455565565666777788999887556788888887777888877776544


Q ss_pred             Hhhhc-------cccchhhHHHHHHHHHHHHH
Q 045564          222 VYIED-------NLSWRLGSGLNIAANLAGVV  246 (296)
Q Consensus       222 ~~l~~-------~~gw~~~F~i~~~~~~~~~~  246 (296)
                      ..+..       ..||+..+.+.+++.++..+
T Consensus       167 ~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~  198 (444)
T PRK09669        167 LPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF  198 (444)
T ss_pred             HHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence            33321       24677777766665544443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.03  E-value=1.3e-08  Score=99.90  Aligned_cols=140  Identities=11%  Similarity=-0.041  Sum_probs=113.7

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ..++...+++.|+++.+|.+..+++.......++..++.+++|++.|| +|||+.+..+.++..++.+++.... .    
T Consensus       274 ~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~~~~~l~~~~-~----  347 (495)
T PRK14995        274 TLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSALSFYGLAMTD-F----  347 (495)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHhc-C----
Confidence            566667788999999999999999999999999999999999999999 7999999888888877776554321 0    


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                   .  .+....++..++.|+|.|...+.......+..|+ ++++.+.+.+++..++|+.+|+.+.+.+.
T Consensus       348 -------------~--~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        348 -------------S--TQQWQAWGLMALLGFSAASALLASTSAIMAAAPP-EKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             -------------C--CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCH-HhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         0  1123345567788999998888888888888884 46888889999999999999999998886


Q ss_pred             cc
Q 045564          226 DN  227 (296)
Q Consensus       226 ~~  227 (296)
                      ++
T Consensus       412 ~~  413 (495)
T PRK14995        412 SR  413 (495)
T ss_pred             HH
Confidence            53

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.03  E-value=9.6e-09  Score=92.99  Aligned_cols=151  Identities=15%  Similarity=0.121  Sum_probs=112.8

Q ss_pred             CchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHH-H
Q 045564           52 GRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSF-I  127 (296)
Q Consensus        52 ~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~-l  127 (296)
                      .....+.+..+.+  - +.+-..+--+.++++.+|+|+..++.+.+...+...+.+++.|.++|+ .||+-..+.+.. .
T Consensus       262 f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~a~~~  340 (459)
T KOG4686|consen  262 FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVASACIL  340 (459)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHHHHHH
Confidence            3334444444443  3 444445666779999999999999999999999999999999999999 699987766654 4


Q ss_pred             HHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHH
Q 045564          128 SLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFF  207 (296)
Q Consensus       128 ~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y  207 (296)
                      ..+++..++++.                         ..-++++.++|+..........+.++.+.||+ ..+++|+..+
T Consensus       341 tl~~H~~l~Ft~-------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~-qLGTaygf~q  394 (459)
T KOG4686|consen  341 TLLGHSGLFFTF-------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEE-QLGTAYGFIQ  394 (459)
T ss_pred             HHHHhhhHHhhh-------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH-HhcchHHHHH
Confidence            555666555442                         23456666777776665555666677777744 7899999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccc
Q 045564          208 ILTYASTVISSAAFVYIEDNLS  229 (296)
Q Consensus       208 ~~~~iG~~i~p~v~~~l~~~~g  229 (296)
                      -..|+|-.+.|+++|.|.+.-|
T Consensus       395 sIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  395 SIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             HHHhhhhhHHhhhhheeecCCC
Confidence            9999999999999999988654

>TIGR00889 2A0110 nucleoside transporter

Probab=99.02  E-value=2.2e-08  Score=96.21  Aligned_cols=144  Identities=15%  Similarity=0.090  Sum_probs=95.3

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcch-HHHHHHHHHHHHHHHHHHHhhccccCCCCCc
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGS-FQVIWISSFISLLGTILLDSTATFDSLRPQR  148 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR-~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~  148 (296)
                      ..++++.|+.+++|++..+.+++.+++.++..++++++|.++|| +|| |+++.++.++..++..+..+..         
T Consensus        21 ~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~~~~~~~---------   90 (418)
T TIGR00889        21 WLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLFFAAQVT---------   90 (418)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhc---------
Confidence            45889999999999999999999999999999999999999999 665 7788877776666554433221         


Q ss_pred             cCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhh----h----ccCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 045564          149 CDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMG----A----NQFEIPQHQGIFFNWFFILTYASTVISSAA  220 (296)
Q Consensus       149 c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~----a----d~f~~~~~r~~~f~~~y~~~~iG~~i~p~v  220 (296)
                                    +...+++.+++.+++.+...+...+..    .    |... +..|.+.++      .+|..+||.+
T Consensus        91 --------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~-~~~~~r~~G------~lG~~ig~~l  149 (418)
T TIGR00889        91 --------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVT-DFPPIRVMG------TIGFIAAMWA  149 (418)
T ss_pred             --------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchh-cCCCeeeeh------hHHHHHHHHH
Confidence                          234556667777776655554443332    1    2111 112333333      3678888888


Q ss_pred             HHhhhccccchhhHHHHHHHHHHHH
Q 045564          221 FVYIEDNLSWRLGSGLNIAANLAGV  245 (296)
Q Consensus       221 ~~~l~~~~gw~~~F~i~~~~~~~~~  245 (296)
                      ++.+....+|. +|++.++..++.+
T Consensus       150 ~g~l~~~~~~~-~f~~~~~~~~~~~  173 (418)
T TIGR00889       150 VSLLDIELSNI-QLYITAGSSALLG  173 (418)
T ss_pred             HHHhcccchhH-HHHHHHHHHHHHH
Confidence            88884433344 4666555444433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.01  E-value=7.1e-08  Score=91.82  Aligned_cols=152  Identities=9%  Similarity=-0.115  Sum_probs=107.3

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ..++...+.++++.+++|++..+.+.+...+.++..++.++.|++.|| .+| +.+.++.++..+...++....      
T Consensus       231 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~~-~~l~~~~~~~~~~~~~l~~~~------  302 (394)
T PRK10213        231 GQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SVK-LALAGAPLVLAVSALVLTLWG------  302 (394)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cch-hHHHHHHHHHHHHHHHHHHHh------
Confidence            455555666455556789999999998999999999999999999999 454 444444444333322222111      


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                      .+.+.+.+..++.|++.+...+...+++.+..|++  ++...+.++...++|..+||.++|++.
T Consensus       303 ----------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lg~~~G~~l~G~l~  364 (394)
T PRK10213        303 ----------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ--AEKAGSIQVAVIQLANTCGAAIGGYAL  364 (394)
T ss_pred             ----------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            12345556677888888888888888888888733  445556666777899999999999999


Q ss_pred             ccccchhhHHHHHHHHHH
Q 045564          226 DNLSWRLGSGLNIAANLA  243 (296)
Q Consensus       226 ~~~gw~~~F~i~~~~~~~  243 (296)
                      +..|++..|...+++..+
T Consensus       365 ~~~g~~~~~~~~~~~~~~  382 (394)
T PRK10213        365 DNIGLTSPLMLSGTLMLL  382 (394)
T ss_pred             hccChhhHHHHHHHHHHH
Confidence            988988888877665443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.98  E-value=4.3e-08  Score=97.03  Aligned_cols=154  Identities=16%  Similarity=0.105  Sum_probs=127.1

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRC  149 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c  149 (296)
                      +...+|.+..+.+|.+...-+.+.+.+.++..++.++.+++.+| +++++.+..+.+++.++.+.+++..          
T Consensus       237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~lal~~----------  305 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLLALSP----------  305 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHHhcch----------
Confidence            44567888889999999999999999999999999999999999 7999999888888877666655442          


Q ss_pred             CCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 045564          150 DIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLS  229 (296)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~g  229 (296)
                                   +.+..++..++.|++.........+.+-...| ++.|++.++++.+..+.+..+|.++.|++.+.+|
T Consensus       306 -------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P-~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g  371 (524)
T PF05977_consen  306 -------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVP-DWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG  371 (524)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                         33455666778888888777777888878888 5589999999999988899999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHH
Q 045564          230 WRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       230 w~~~F~i~~~~~~~~~~~~  248 (296)
                      -+..+.+.++.++++.++.
T Consensus       372 ~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  372 VRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9988888877665555544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.98  E-value=1.8e-08  Score=95.62  Aligned_cols=161  Identities=17%  Similarity=0.143  Sum_probs=130.4

Q ss_pred             H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccC
Q 045564           65 T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDS  143 (296)
Q Consensus        65 ~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~  143 (296)
                      + +.-++.+....|..+.+|++..+...+.....+...++.+++|++.|| +|-|+++.++.+++.+..+..-+..    
T Consensus       265 ~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~~~~~~~~~----  339 (438)
T COG2270         265 IDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIAALYLIFLE----  339 (438)
T ss_pred             HhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHHHHHHHHcc----
Confidence            6 777788888899999999999999999999999999999999999999 8999999999988877444332211    


Q ss_pred             CCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 045564          144 LRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVY  223 (296)
Q Consensus       144 ~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~  223 (296)
                                         ....+++.-.+.|...|+.++..-++.+++.|++ +-+.+|++|.+..-.++.+||...+.
T Consensus       340 -------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~-k~~~fFglyaltgra~S~~gp~lv~v  399 (438)
T COG2270         340 -------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKG-KEGRFFGLYALTGRAASFLGPFLVAV  399 (438)
T ss_pred             -------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCc-cccceeehhhhhhhHHHHHHHHHHHH
Confidence                               1123445556889999999999999999999944 56889999999999999999999998


Q ss_pred             hhcccc-chhhHHHHHHHHHHHHHHHHh
Q 045564          224 IEDNLS-WRLGSGLNIAANLAGVVIFLS  250 (296)
Q Consensus       224 l~~~~g-w~~~F~i~~~~~~~~~~~~~~  250 (296)
                      +.+.+| -|.++..-.+..++++++++.
T Consensus       400 ~t~iTg~~r~g~~~i~vll~iGl~~L~~  427 (438)
T COG2270         400 ITQITGSSRAGVLSIIVLLLIGLLLLLR  427 (438)
T ss_pred             HHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence            887654 577777666666677765543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.97  E-value=4.7e-08  Score=95.19  Aligned_cols=173  Identities=16%  Similarity=0.072  Sum_probs=110.8

Q ss_pred             HHHHHHHHH-H--hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHH
Q 045564           56 LLSRTVTCL-T--LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGT  132 (296)
Q Consensus        56 ~~~l~~~~~-~--~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~  132 (296)
                      .+.+.+..+ +  ++.+...++|.|+++.+  +.........+..+...+..+++|++||| +||+|++.++.+...++.
T Consensus       254 ~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i~~  330 (462)
T PRK15034        254 LWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAIFS  330 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHHHH
Confidence            344444445 3  55556668888988765  33333444555677888899999999999 799999999888776655


Q ss_pred             HHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCC------c----------
Q 045564          133 ILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEI------P----------  196 (296)
Q Consensus       133 ~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~------~----------  196 (296)
                      ....+.  +|.-               +..++..+.+..+.+.+..|.-+..+.-++.+.||+      +          
T Consensus       331 ~~~~l~--lp~~---------------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~  393 (462)
T PRK15034        331 ALLFLT--LPGT---------------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQ  393 (462)
T ss_pred             HHHHHH--hccc---------------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHh
Confidence            432222  2210               012345555555555555565566666666666662      0          


Q ss_pred             ----cchhhHHHHHHHHHHHHHHHHHHHHHhhhccc-cchhhHHHHHHHHHHHHHHH
Q 045564          197 ----QHQGIFFNWFFILTYASTVISSAAFVYIEDNL-SWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       197 ----~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~-gw~~~F~i~~~~~~~~~~~~  248 (296)
                          ++-+...++......+|+.+-|.+.++..+.. ++..+|++..+..++.+++-
T Consensus       394 ~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  450 (462)
T PRK15034        394 REAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLT  450 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence                13456667667777788888887877776654 47778888877766655553

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.96  E-value=2.6e-08  Score=97.15  Aligned_cols=162  Identities=9%  Similarity=0.025  Sum_probs=108.4

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhh----hhcchH-HHHHHHHHHHHHHHHHHHhhcc
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIAD----SFLGSF-QVIWISSFISLLGTILLDSTAT  140 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laD----r~iGR~-~~i~i~~~l~~ig~~~la~~~~  140 (296)
                      .+..+..+++.|+++.+|++...++.+..+.-+...+..|+.|+++|    | +||| +-++++.+...++..++..+  
T Consensus        21 ~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~~llf~~--   97 (473)
T PRK10429         21 AIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVLFLLFSA--   97 (473)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHHHHHHcC--
Confidence            44445678899999999999999999999999999999999999999    5 5985 45666777666655444221  


Q ss_pred             ccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 045564          141 FDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAA  220 (296)
Q Consensus       141 ~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v  220 (296)
                       |..              +.......+++...+..++......+..++.+|+.++.++|.+.+++-.+..++|+.+.+.+
T Consensus        98 -p~~--------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~  162 (473)
T PRK10429         98 -HLF--------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF  162 (473)
T ss_pred             -CCC--------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             211              00112233344445566777777888888999998656678888888666667776665544


Q ss_pred             HHhhhc-------cccchhhHHHHHHHHHHHH
Q 045564          221 FVYIED-------NLSWRLGSGLNIAANLAGV  245 (296)
Q Consensus       221 ~~~l~~-------~~gw~~~F~i~~~~~~~~~  245 (296)
                      ...+.+       ..+|++...+.+++.++..
T Consensus       163 ~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~  194 (473)
T PRK10429        163 TLPFVNYVGGGDRGFGFQMFTLVLIAFFIVST  194 (473)
T ss_pred             HHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            433221       1245555555555444433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.96  E-value=3.8e-08  Score=93.85  Aligned_cols=153  Identities=10%  Similarity=-0.038  Sum_probs=103.6

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRC  149 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c  149 (296)
                      ...++|.|+++..| ++.+.+.+.++..+...++....+++.||.++.++.+..+.++..++.+++....          
T Consensus       227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~----------  295 (400)
T PRK11646        227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS----------  295 (400)
T ss_pred             HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh----------
Confidence            44567888876655 6677777766666555544444456655536767777777777776655444321          


Q ss_pred             CCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccc-
Q 045564          150 DIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNL-  228 (296)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~-  228 (296)
                                   +...+.+..++.+++.+...|...+...+..|+ +.|++.+++++...++|..+||.+.|++.+.. 
T Consensus       296 -------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~-~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~  361 (400)
T PRK11646        296 -------------NLQQLFTLICLFYIGSIIAEPARETLSASLADA-RARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK  361 (400)
T ss_pred             -------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCc-ccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence                         123344455667788888888889999999984 47899999999999999999999999998764 


Q ss_pred             --c-chhhHHHHHHHHHHHHHH
Q 045564          229 --S-WRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       229 --g-w~~~F~i~~~~~~~~~~~  247 (296)
                        + ....|++..++.+++.+.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        362 ALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             hcCCcchHHHHHHHHHHHHHHH
Confidence              2 244555544444444433

>PRK10054 putative transporter; Provisional

Probab=98.95  E-value=3.1e-08  Score=94.34  Aligned_cols=152  Identities=9%  Similarity=-0.061  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCc
Q 045564           71 VANLMVYMIQE--FHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQR  148 (296)
Q Consensus        71 ~~~l~~yl~~~--lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~  148 (296)
                      ..+.+.|+...  .+.+....+.+...+........++.|++.|| .|||+.+.++.++..++.+.+.+..         
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~---------  295 (395)
T PRK10054        226 ASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCFVIGLVGFIFSG---------  295 (395)
T ss_pred             hhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHcc---------
Confidence            34555565433  34555566667777777667777888999999 7999999988888877766554321         


Q ss_pred             cCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 045564          149 CDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNL  228 (296)
Q Consensus       149 c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~  228 (296)
                                   .+.+.+++..++.++|.+...|...+.+.+..|+ +.|++.++... ...+|..+||.++|++.|..
T Consensus       296 -------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~-~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~  360 (395)
T PRK10054        296 -------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPP-GMKASYFSAQS-LGWLGAAINPLVSGVILTTL  360 (395)
T ss_pred             -------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCc-ccceehHhHHH-HHHHHHHHHHHHHHHHHHHc
Confidence                         1234455667788888888888888889898884 46778887644 55689999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHH
Q 045564          229 SWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       229 gw~~~F~i~~~~~~~~~~~  247 (296)
                      |....|++.+++..++.++
T Consensus       361 g~~~~~~~~~~~~~~~~~~  379 (395)
T PRK10054        361 PPWSLFVILALAIVAAWLL  379 (395)
T ss_pred             ChhhHHHHHHHHHHHHHHH
Confidence            9888888766655554443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.93  E-value=8e-08  Score=93.70  Aligned_cols=157  Identities=9%  Similarity=-0.043  Sum_probs=105.6

Q ss_pred             hhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHH
Q 045564           54 TALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLL  130 (296)
Q Consensus        54 ~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~i  130 (296)
                      |.+..+++..+  . ..+......+.|.+..++ +....+.+..+..+...++.++.++++|| +|||+++.++.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHH
Confidence            44444444444  3 444344444444443344 44555566666667888889999999999 7999999988887776


Q ss_pred             HHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCC------ccchhhHHH
Q 045564          131 GTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEI------PQHQGIFFN  204 (296)
Q Consensus       131 g~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~------~~~r~~~f~  204 (296)
                      +.+.+.+....+                  ..+...+++..++.+++.+...+...++++|..+.      +++.+..++
T Consensus       309 ~~~~~~~~~~~~------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s  370 (473)
T PRK10429        309 SCGVLLLMGLAA------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYS  370 (473)
T ss_pred             HHHHHHHHhccC------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHH
Confidence            655543321011                  01234556666778889998889999999999661      223455778


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccc
Q 045564          205 WFFILTYASTVISSAAFVYIEDNLSW  230 (296)
Q Consensus       205 ~~y~~~~iG~~i~p~v~~~l~~~~gw  230 (296)
                      ...+...+|..+++.+.|++.+..|+
T Consensus       371 ~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        371 VQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88888899999999999988765554

>PRK09669 putative symporter YagG; Provisional

Probab=98.93  E-value=1.2e-07  Score=91.47  Aligned_cols=120  Identities=8%  Similarity=-0.045  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHH
Q 045564           89 SALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLY  168 (296)
Q Consensus        89 a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~  168 (296)
                      .+.+.....+...++.+++++++|| +|||+.+.++.++..++.+.+.+.   +                  ..+...++
T Consensus       266 ~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~---~------------------~~~~~~~~  323 (444)
T PRK09669        266 ATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILSALIFFI---P------------------PSNVWLIF  323 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHh---C------------------cchHHHHH
Confidence            3445555667777888899999999 799999998877665433322211   1                  02345566


Q ss_pred             HHHHHHHHhhchhhhhhhhhhhccCCC------ccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 045564          169 SGIALACLGLGGLRFTLATMGANQFEI------PQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSW  230 (296)
Q Consensus       169 ~~~~l~gig~g~~~~~~~~~~ad~f~~------~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw  230 (296)
                      +..++.+++.+...+...++++|..+.      +++.+..++.+.++..+|..+|+.++|++.+..|+
T Consensus       324 ~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        324 ALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            777889999999999999999999861      22345577888899999999999999988776666

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.92  E-value=6.8e-08  Score=92.77  Aligned_cols=142  Identities=14%  Similarity=0.047  Sum_probs=112.4

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      +.....+..+.|.+..+|.+ ...+.+..+..+...++.++.++++|| +|+||++..+.++.+++.+++.+...     
T Consensus       240 ~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~~-----  312 (428)
T PF13347_consen  240 AFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAALGFLLLFFLGP-----  312 (428)
T ss_pred             hhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHHHHHHHHHHHh-----
Confidence            34334556667777778877 455667778888899999999999999 79999999999999998887665420     


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCC------ccchhhHHHHHHHHHHHHHHHHHH
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEI------PQHQGIFFNWFFILTYASTVISSA  219 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~------~~~r~~~f~~~y~~~~iG~~i~p~  219 (296)
                                      .+.+.+++..++.+++.+...+...++++|..+.      +++.+..++.+.+...+|..+++.
T Consensus       313 ----------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~  376 (428)
T PF13347_consen  313 ----------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGA  376 (428)
T ss_pred             ----------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHH
Confidence                            1346777888899999999999999999999982      234577888899999999999999


Q ss_pred             HHHhhhccccc
Q 045564          220 AFVYIEDNLSW  230 (296)
Q Consensus       220 v~~~l~~~~gw  230 (296)
                      +.+.+.+..|+
T Consensus       377 i~g~~l~~~Gy  387 (428)
T PF13347_consen  377 IVGLLLALVGY  387 (428)
T ss_pred             HHHHHHHHhCc
Confidence            88888665444

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.91  E-value=2.2e-07  Score=86.88  Aligned_cols=135  Identities=12%  Similarity=0.094  Sum_probs=87.4

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ..+....+.+.++.+.+|.+..+++.+.....++..++.+++|+++|| +|||+++.++.++..+..+.+......+   
T Consensus       209 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~---  284 (377)
T PRK11102        209 GMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIMGIWLVVSALLD---  284 (377)
T ss_pred             HHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            455555666778888899999999999999999999999999999999 7999999988776544333222221000   


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHH-HHHHHHHHHHHHH
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFIL-TYASTVISSAAFV  222 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~-~~iG~~i~p~v~~  222 (296)
                                      .+...+.++..+.+.+.+...+.......|..|  +.+++..+.+... ..+|+.+++++.+
T Consensus       285 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        285 ----------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP--HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             ----------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc--ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence                            112233333334444445555555566777776  2567777664333 3356666665543

>TIGR00901 2A0125 AmpG-related permease

Probab=98.90  E-value=5.1e-08  Score=90.72  Aligned_cols=132  Identities=11%  Similarity=0.041  Sum_probs=96.8

Q ss_pred             H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHH-HHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhcccc
Q 045564           65 T-LGEGWVANLMVYMIQEFHITSINSALISNIVN-GFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFD  142 (296)
Q Consensus        65 ~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~-~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p  142 (296)
                      . .+++..+.++.|+.+ +|++..+.+.+..+.. ....++.+++|+++|| +|||+.+.++.++..++..+..+..  +
T Consensus       222 ~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~--~  297 (356)
T TIGR00901       222 KLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQALTNAGFVWLA--S  297 (356)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence            5 777778889999987 9999999888777655 5678999999999999 7999999888887776655443321  0


Q ss_pred             CCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHH
Q 045564          143 SLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTY  211 (296)
Q Consensus       143 ~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~  211 (296)
                      ....      ++  ..  ..+...+....++.+++.+...+...+++.|.+|++ .|++.+++++...|
T Consensus       298 ~~~~------~~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~-~~g~~~g~~~~~~~  355 (356)
T TIGR00901       298 NGHH------DG--IT--FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPK-FGATQMALLSSLSA  355 (356)
T ss_pred             cCcc------cc--cc--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHh
Confidence            0000      00  00  012345566677888999999999999999999954 79999998776544

>TIGR00898 2A0119 cation transport protein

Probab=98.90  E-value=9.2e-08  Score=93.42  Aligned_cols=130  Identities=12%  Similarity=-0.012  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHH
Q 045564           93 SNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIA  172 (296)
Q Consensus        93 ~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~  172 (296)
                      ..+..+....+.+++++++|| +|||+.+.++.++..++.+++.+..   .                  .......+..+
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~---~------------------~~~~~~~~~~~  418 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVP---V------------------DLYFLRTALAV  418 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcC---C------------------CchHHHHHHHH
Confidence            334556677788899999999 7999999998888777665554321   1                  01122333344


Q ss_pred             HHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Q 045564          173 LACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       173 l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~  247 (296)
                      +.+++.++..+....+.+|.+|++ .|+++.++.+....+|+.++|.+.+ +. ..++..++.+.++..+++.++
T Consensus       419 ~~~~~~~~~~~~~~~~~~e~~p~~-~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~  490 (505)
T TIGR00898       419 LGKFGITSAFQMVYLYTAELYPTV-VRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGIL  490 (505)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHH-HHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHH
Confidence            555666667788889999999954 7899999999999999999999988 44 346667777766655554443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.90  E-value=1.5e-07  Score=88.97  Aligned_cols=170  Identities=13%  Similarity=-0.056  Sum_probs=104.6

Q ss_pred             HHHHHHHH-H-hHHH-hHHHHHHHHHHHhCCChhHHHHH--HHHHHHHHHHHHHHH-HHHhhhhcchHHHHHHHHHHH-H
Q 045564           57 LSRTVTCL-T-LGEG-WVANLMVYMIQEFHITSINSALI--SNIVNGFVNLFPVLG-AIIADSFLGSFQVIWISSFIS-L  129 (296)
Q Consensus        57 ~~l~~~~~-~-~~y~-~~~~l~~yl~~~lg~s~~~a~~i--~~~~~~~~~~~~l~~-G~laDr~iGR~~~i~i~~~l~-~  129 (296)
                      ..+....+ . .-++ ....++.|+ ++.|+|.++.+..  ..+......+.+++. ++.+|| +||||..++...+. .
T Consensus         4 ~~~~~ly~~~g~~~~~~~p~lp~~l-~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~~   81 (390)
T TIGR02718         4 ITLGLLYLSQGIPIGLAMDALPTLL-REDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLVS   81 (390)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHHH
Confidence            34444555 3 4444 445666666 4669999999886  344455555555555 668999 79999976665332 2


Q ss_pred             HHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHH
Q 045564          130 LGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFIL  209 (296)
Q Consensus       130 ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~  209 (296)
                      +....++..  .+.                 ......++....+.++..+...+...++..|..+++ +++...+....+
T Consensus        82 ~~~~~~~~~--~~~-----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~-~~~~~~~~~~~g  141 (390)
T TIGR02718        82 ACLASLALV--GPD-----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGR-TLAKGNAVQIAG  141 (390)
T ss_pred             HHHHHHHcC--Ccc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh-hhhHHHHHHHHH
Confidence            112222211  111                 011122333344455666667777777777776533 445555556667


Q ss_pred             HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHH
Q 045564          210 TYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       210 ~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      ..+|..+|+.+.+++.+.+|||..|++.++..++..+..
T Consensus       142 ~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~  180 (390)
T TIGR02718       142 VMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCV  180 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            788999999888899999999999999888766555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.90  E-value=2e-07  Score=90.91  Aligned_cols=198  Identities=13%  Similarity=0.028  Sum_probs=126.2

Q ss_pred             CCchhHHHHHHHHH---H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHH
Q 045564           51 GGRTALLSRTVTCL---T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSF  126 (296)
Q Consensus        51 ~~~~~~~~l~~~~~---~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~  126 (296)
                      .+++.+...+.+.+   . +.+.+ .+..+.+-++-|++..++.++......+..++.+++.++-|| +|||+.++++..
T Consensus       266 ~lR~~~~i~~~v~~~qq~sGi~ai-~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~  343 (485)
T KOG0569|consen  266 TLRRPLLIGIVVSFAQQFSGINAI-FFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLS  343 (485)
T ss_pred             chhHHHHHHHHHHHHHHhcCccee-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHH
Confidence            34555544444444   2 33323 233445556789999999999999999999999999999999 799999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhc-hhhhhhhhhhhccCCCccchhhHHHH
Q 045564          127 ISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLG-GLRFTLATMGANQFEIPQHQGIFFNW  205 (296)
Q Consensus       127 l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g-~~~~~~~~~~ad~f~~~~~r~~~f~~  205 (296)
                      +..+..+++..+.++...              ...+-....+++.++..++.+ +..|...-+.+|+||+ ..|..++++
T Consensus       344 ~~~~~~~~~~~~~~l~~~--------------~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~-~~R~aa~s~  408 (485)
T KOG0569|consen  344 LMAVALLLMSIALFLSNS--------------FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQ-SARSAAQSV  408 (485)
T ss_pred             HHHHHHHHHHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCc-cchHHHHHH
Confidence            988888887766432110              000000112333344333333 3567778889999994 468888888


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH---HHhCCC-chhHHHHHHHhcC
Q 045564          206 FFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVI---FLSGKH-FYFPVIVASVKKW  266 (296)
Q Consensus       206 ~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~---~~~~~~-~~~~v~~~~~~~~  266 (296)
                      -+....+..++-...-..+.+..|- +.|.+.++..++..+.   +++++| |....+....+|+
T Consensus       409 ~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  409 ATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            6666666666666666666666653 4455544444333333   345555 5556666666666

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.87  E-value=2.1e-07  Score=88.09  Aligned_cols=160  Identities=11%  Similarity=-0.107  Sum_probs=100.3

Q ss_pred             HHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchH---HHHHH-HHHHHH
Q 045564           57 LSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSF---QVIWI-SSFISL  129 (296)
Q Consensus        57 ~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~---~~i~i-~~~l~~  129 (296)
                      +.+....+  . .+|++.+++|+|+++ .|++.. ++....+......   +..++++|| +.||   +.... ..++..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~-~~r~~~r~~~~~~~~~~~a  268 (368)
T TIGR00903       195 WIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDR-VARAGLRSIYIRAAALLIA  268 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHH-hhhhhhHHHHHHHHHHHHH
Confidence            44434444  5 888889999999964 678764 4444444444333   445888888 5543   33222 233322


Q ss_pred             HHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHH
Q 045564          130 LGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFIL  209 (296)
Q Consensus       130 ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~  209 (296)
                      ++...+....                       +....++...+.+++.....+...++.+|.+|++ .|+++.++.+..
T Consensus       269 ~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~-~rgt~~G~~~~~  324 (368)
T TIGR00903       269 AFFLALAFEL-----------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKE-LHGKAAGAIGFT  324 (368)
T ss_pred             HHHHHHHHcc-----------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchh-hcCcccchhhHH
Confidence            2222221110                       1112233344555666666677889999999954 799999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHH
Q 045564          210 TYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       210 ~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      .++|+..+|.+.+.+..  |.+..|.+.++..+++.+..
T Consensus       325 g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       325 SRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             HHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888774  66677777776665555544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.86  E-value=2.9e-07  Score=85.94  Aligned_cols=182  Identities=15%  Similarity=0.112  Sum_probs=129.7

Q ss_pred             cCCchhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH
Q 045564           50 RGGRTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFI  127 (296)
Q Consensus        50 ~~~~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l  127 (296)
                      ++.+.+..+.+..-+ + .+|.+..++|.++. +.|+|..+++.+++..........+.+-.+++|.--+|+..+.....
T Consensus       205 w~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~  283 (395)
T COG2807         205 WRSPLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLL  283 (395)
T ss_pred             ccCchhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            444455555555555 7 99999999999986 67999999999999999999999999999999855688888888888


Q ss_pred             HHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHH
Q 045564          128 SLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFF  207 (296)
Q Consensus       128 ~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y  207 (296)
                      ..+|.+.+.+.+   .                   +...+.  .+++|+|.|+..+..-.++.+-.++.++-.+.-+.-.
T Consensus       284 ~l~G~~G~~~~P---~-------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQ  339 (395)
T COG2807         284 MLVGLVGLLLAP---G-------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQ  339 (395)
T ss_pred             HHHHHHHHHHhh---h-------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhh
Confidence            888888776542   1                   222222  4789999999999999999998874434344443323


Q ss_pred             HHHHHHHHHHHHHHHhhhccc-cchhhHHHHHHHHHHHHHH-HHhCCCchh
Q 045564          208 ILTYASTVISSAAFVYIEDNL-SWRLGSGLNIAANLAGVVI-FLSGKHFYF  256 (296)
Q Consensus       208 ~~~~iG~~i~p~v~~~l~~~~-gw~~~F~i~~~~~~~~~~~-~~~~~~~~~  256 (296)
                      -..++=+.+||.+.|++-|.. +|+......+.+.++..+. +...+.+|.
T Consensus       340 g~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~r~~~i  390 (395)
T COG2807         340 GVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAGRNRYI  390 (395)
T ss_pred             hhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcchhHHh
Confidence            333444677999999998876 5776655544433332222 334444553

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.86  E-value=2.5e-07  Score=88.07  Aligned_cols=153  Identities=9%  Similarity=-0.034  Sum_probs=110.0

Q ss_pred             HHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 045564           68 EGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQ  147 (296)
Q Consensus        68 y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~  147 (296)
                      ......++.|+.+.+|.+..+.+.+.....++..++.++.+++.|| .++++.+..+..+ .+..+.+...         
T Consensus       222 ~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~~-~~~~~~~~~~---------  290 (393)
T PRK11195        222 ATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGILM-GLVVLLMALQ---------  290 (393)
T ss_pred             HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHHH-HHHHHHHHHH---------
Confidence            3344455678888899999999999999999999999999999999 7999888777533 2222222211         


Q ss_pred             ccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 045564          148 RCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDN  227 (296)
Q Consensus       148 ~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~  227 (296)
                                    .+.+...+..++.|++.+...++..+.+.+.-|++..+++.++..++..++|..++..+.+.+ +.
T Consensus       291 --------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~  355 (393)
T PRK11195        291 --------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VK  355 (393)
T ss_pred             --------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HH
Confidence                          122334455667888888877778888777655433378899999999999999999888865 45


Q ss_pred             ccchhhHHHHHHHHHHHHH
Q 045564          228 LSWRLGSGLNIAANLAGVV  246 (296)
Q Consensus       228 ~gw~~~F~i~~~~~~~~~~  246 (296)
                      +|-+..+.+.....++.+.
T Consensus       356 ~~~~~~~~~~~~~~~~~~~  374 (393)
T PRK11195        356 LGVPVVAVIVGFGLLVALA  374 (393)
T ss_pred             cCCCHHHHHHHHHHHHHHH
Confidence            6767777765554444443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.85  E-value=8.7e-08  Score=94.54  Aligned_cols=170  Identities=11%  Similarity=0.059  Sum_probs=129.1

Q ss_pred             HHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHH--HHHHHHHHHHHHH
Q 045564           57 LSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQ--VIWISSFISLLGT  132 (296)
Q Consensus        57 ~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~--~i~i~~~l~~ig~  132 (296)
                      .+.+...+ . +++....+++.|.. ..|+++.+++.++++..+...++-++.|+++|+ ...++  ...++.++..+..
T Consensus       302 ~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~gl~~  379 (509)
T KOG2504|consen  302 LLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIAGLAR  379 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHHHHHH
Confidence            33333444 4 66666677888876 899999999999999999999999999999999 56333  3333334333333


Q ss_pred             HHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHH
Q 045564          133 ILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYA  212 (296)
Q Consensus       133 ~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~i  212 (296)
                      +.+.+.                       .+...+...-++.|+..|...+..+..+.|+.+.+ +...++++..+...+
T Consensus       380 ~~~p~~-----------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~-~l~~a~Gl~l~~~gi  435 (509)
T KOG2504|consen  380 LFLPFA-----------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE-KLSNAYGLLLLFQGI  435 (509)
T ss_pred             HHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh-hcchHHHHHHHHhHH
Confidence            222211                       13456777778889999988888888999999844 578899999999999


Q ss_pred             HHHHHHHHHHhhhcccc-chhhHHHHHHHHHHHHHHHHhCC
Q 045564          213 STVISSAAFVYIEDNLS-WRLGSGLNIAANLAGVVIFLSGK  252 (296)
Q Consensus       213 G~~i~p~v~~~l~~~~g-w~~~F~i~~~~~~~~~~~~~~~~  252 (296)
                      ++++||.++|++.|..| |...|+.+.+.++++.+.+++.+
T Consensus       436 ~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  436 GALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99999999999998877 99999999998888776665544

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.84  E-value=5.6e-08  Score=89.12  Aligned_cols=131  Identities=16%  Similarity=0.164  Sum_probs=106.6

Q ss_pred             hHHHhHHHHHHHHHHHhCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCC
Q 045564           66 LGEGWVANLMVYMIQEFHIT-SINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s-~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~  144 (296)
                      .++....+++.|+.+.+|.+ ..+.+.+..+..+...++.++.|+++|| +|+++.+.+......++.+.+.+....   
T Consensus       221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---  296 (352)
T PF07690_consen  221 VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILGALGLLLLPFS---  296 (352)
T ss_dssp             HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHCCSHHH---
T ss_pred             HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            55557788888989999999 7899999999999999999999999999 799888888777776665554433210   


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHH
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISS  218 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p  218 (296)
                                       .+....++..++.|++.+...+...++..|.+|+ +.|++..++++...++|+.+||
T Consensus       297 -----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  297 -----------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPP-EYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHCC
Confidence                             1234555567788999999999999999999984 4789999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.83  E-value=3.6e-07  Score=86.26  Aligned_cols=68  Identities=13%  Similarity=0.152  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhh
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDST  138 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~  138 (296)
                      .....+.|+.+++|++..+.+.......+...++.++.|++.|| +|||+.+.++.++..++.+.+.+.
T Consensus       222 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        222 FVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455667888899999999988888899999999999999999 799999999988888777666543

>PRK11462 putative transporter; Provisional

Probab=98.83  E-value=2.2e-07  Score=90.53  Aligned_cols=163  Identities=13%  Similarity=0.126  Sum_probs=113.5

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhh---hcchHHHHH-HHHHHHHHHHHHHHhhccc
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADS---FLGSFQVIW-ISSFISLLGTILLDSTATF  141 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr---~iGR~~~i~-i~~~l~~ig~~~la~~~~~  141 (296)
                      .+..+..++..|.++.+|+++..++.+..+.-+.-.+.-|+.|+++||   .+||||..+ ++.+...++.+++...   
T Consensus        24 ~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~---  100 (460)
T PRK11462         24 IFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST---  100 (460)
T ss_pred             HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC---
Confidence            444456788999999999999999999999999999999999999997   269876654 5656776665544322   


Q ss_pred             cCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 045564          142 DSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAF  221 (296)
Q Consensus       142 p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~  221 (296)
                      |...              ......-+++...+..++......+-.++.+|+.++.++|.+..++..+..++|..+++.+.
T Consensus       101 p~~s--------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~  166 (460)
T PRK11462        101 PDLS--------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM  166 (460)
T ss_pred             CCCC--------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3210              01122334444455677777777788889999998777899999998888888887777665


Q ss_pred             Hhhhcc-------ccchhhHHHHHHHHHHHH
Q 045564          222 VYIEDN-------LSWRLGSGLNIAANLAGV  245 (296)
Q Consensus       222 ~~l~~~-------~gw~~~F~i~~~~~~~~~  245 (296)
                      ..+.+.       .||+....+.+++.++..
T Consensus       167 ~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~  197 (460)
T PRK11462        167 MPLVNLIGGDNKPLGFQGGIAVLSVVAFMML  197 (460)
T ss_pred             HHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            444322       246655555544443333

>PRK11043 putative transporter; Provisional

Probab=98.82  E-value=8.9e-07  Score=83.83  Aligned_cols=142  Identities=8%  Similarity=-0.056  Sum_probs=99.4

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .++....+++.|+. +.|++..+.+........+..++.++++++.|| +|||+.+....+...++.+.+.+....+.  
T Consensus       218 ~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  293 (401)
T PRK11043        218 AFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLASLLSH--  293 (401)
T ss_pred             HHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence            44555566777775 579999998887777778888899999999999 79999877666655554443332221100  


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                      .+....++...+.+++.+...+...+...+.+|+  .+++..++++.....++.+++.+.+.+.
T Consensus       294 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~~~~~~~~~~g~l~  355 (401)
T PRK11043        294 ----------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ--ATGKAAALQNTLQLGLCFLASLLVSALI  355 (401)
T ss_pred             ----------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc--cChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence                            1123344455667788888888887777787773  5788899888777778888888888887


Q ss_pred             cccc
Q 045564          226 DNLS  229 (296)
Q Consensus       226 ~~~g  229 (296)
                      +...
T Consensus       356 ~~~~  359 (401)
T PRK11043        356 STPL  359 (401)
T ss_pred             CCCh
Confidence            6433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.82  E-value=2.4e-07  Score=86.51  Aligned_cols=148  Identities=11%  Similarity=0.060  Sum_probs=107.1

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCc
Q 045564           77 YMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLC  156 (296)
Q Consensus        77 yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~  156 (296)
                      .+.++.|++..+.+.+.....+...+..++.|.++|| +||||.-++.++++.+..+.--    .               
T Consensus        59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~----~---------------  118 (354)
T PF05631_consen   59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKH----S---------------  118 (354)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHh----c---------------
Confidence            3456899999999998888888999999999999999 7999999999999988654221    1               


Q ss_pred             CCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCC----ccchhhHHHHHH-HHHHHHHHHHHHHHHhhhccccc-
Q 045564          157 KAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEI----PQHQGIFFNWFF-ILTYASTVISSAAFVYIEDNLSW-  230 (296)
Q Consensus       157 ~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~----~~~r~~~f~~~y-~~~~iG~~i~p~v~~~l~~~~gw-  230 (296)
                           .+...++++|++.|++......+--+.+.....+    ++....-|+... +.+.+-++++.+++.++.+..+. 
T Consensus       119 -----~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g  193 (354)
T PF05631_consen  119 -----SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFG  193 (354)
T ss_pred             -----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCC
Confidence                 1357899999999999998887666655433321    223333444332 23334456667777788776654 


Q ss_pred             -hhhHHHHHHHHHHHHHHHH
Q 045564          231 -RLGSGLNIAANLAGVVIFL  249 (296)
Q Consensus       231 -~~~F~i~~~~~~~~~~~~~  249 (296)
                       ..+|..++++.+++.++..
T Consensus       194 ~vaPF~~a~~~l~~~~~~I~  213 (354)
T PF05631_consen  194 PVAPFDAAIVLLAVAAVLIL  213 (354)
T ss_pred             CcchHHHHHHHHHHHHHHHH
Confidence             7889988887777666544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.81  E-value=2.4e-08  Score=95.87  Aligned_cols=172  Identities=12%  Similarity=0.053  Sum_probs=120.9

Q ss_pred             HHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhh----hhcchHHH-HHHHHHHHHHHHHHHHhhccc
Q 045564           67 GEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIAD----SFLGSFQV-IWISSFISLLGTILLDSTATF  141 (296)
Q Consensus        67 ~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laD----r~iGR~~~-i~i~~~l~~ig~~~la~~~~~  141 (296)
                      ......+++.|+++.+|+++..++.+..+.-+...+..|+.|.++|    | +||||. ++++.++..++.+++..+  .
T Consensus        17 ~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~llf~~--~   93 (428)
T PF13347_consen   17 WSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLLFSP--P   93 (428)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHhhcc--c
Confidence            3334568888999999999999999999999999999999999999    7 797765 556777777766655433  1


Q ss_pred             cCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 045564          142 DSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAF  221 (296)
Q Consensus       142 p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~  221 (296)
                      |.-.             +.......+++..++..++......+..++++|+.+++++|.+..++-.+...+|.++...+.
T Consensus        94 p~~~-------------~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~  160 (428)
T PF13347_consen   94 PAGL-------------SFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLA  160 (428)
T ss_pred             cchh-------------hhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            2100             001122334555666688888888889999999998666788888887777777776555544


Q ss_pred             Hhhhc----c---ccchhhHHHHHHHHHHHHHHHHhCCCc
Q 045564          222 VYIED----N---LSWRLGSGLNIAANLAGVVIFLSGKHF  254 (296)
Q Consensus       222 ~~l~~----~---~gw~~~F~i~~~~~~~~~~~~~~~~~~  254 (296)
                      +.+.+    .   .+|++..++.+++.++..++.+...|.
T Consensus       161 ~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  161 PILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             hhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            44432    2   168888887777666655554444443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.81  E-value=1.1e-07  Score=92.73  Aligned_cols=175  Identities=14%  Similarity=0.131  Sum_probs=109.6

Q ss_pred             HHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcch----HHHHHHHHHHH
Q 045564           56 LLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGS----FQVIWISSFIS  128 (296)
Q Consensus        56 ~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR----~~~i~i~~~l~  128 (296)
                      ++.++...+  . +++....++|+|+.+.||++..+.+...++-.+...+..+++|.++||..-|    +.+..+...+.
T Consensus       260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~  339 (466)
T KOG2532|consen  260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIA  339 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHH
Confidence            355555555  6 8888999999999999999999999999999999999999999999995331    11122222211


Q ss_pred             HHHH--HHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHH
Q 045564          129 LLGT--ILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWF  206 (296)
Q Consensus       129 ~ig~--~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~  206 (296)
                      ..+.  .++.+. +.+.      +        +.......+.++..+.|+..++..    .-..|.-|  +.-+..+++.
T Consensus       340 ~~~~ai~l~~l~-~~~~------~--------~~~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~ap--q~a~~l~g~~  398 (466)
T KOG2532|consen  340 FGGPAVFLLVLA-FTSD------E--------HRLLAVILLTIAIGLSGFNISGFY----KNHQDIAP--QHAGFVMGII  398 (466)
T ss_pred             HHHHHHHHHeee-ecCC------C--------cchHHHHHHHHHHHHcccchhhhH----hhhhhccc--hHHHHHHHHH
Confidence            1111  111111 1110      0        000111222222222222222211    11122122  3456777888


Q ss_pred             HHHHHHHHHHHHHHHHhhhcc---ccchhhHHHHHHHHHHHHHHHHhC
Q 045564          207 FILTYASTVISSAAFVYIEDN---LSWRLGSGLNIAANLAGVVIFLSG  251 (296)
Q Consensus       207 y~~~~iG~~i~p~v~~~l~~~---~gw~~~F~i~~~~~~~~~~~~~~~  251 (296)
                      +...++.++++|.+++.+.++   ..|++.|++.++++.++.++|.+.
T Consensus       399 ~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  399 NFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            889999999999999999843   379999999999888887766443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.79  E-value=4.2e-07  Score=87.18  Aligned_cols=150  Identities=9%  Similarity=-0.074  Sum_probs=106.9

Q ss_pred             hHHHhHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCC
Q 045564           66 LGEGWVANLMVYMIQE-FHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~-lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~  144 (296)
                      ...+..++++.|+.+. .+.+...++...+.+.+...++-+++|+++|| +++||++.++.++..+..++.....     
T Consensus       247 ~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~~~ll~~~~~-----  320 (410)
T TIGR00885       247 VQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMALCLGSIFAG-----  320 (410)
T ss_pred             HHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHcC-----
Confidence            4445667888888653 24555555666777778889999999999999 7999998888877776555444321     


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                                        +. ......++.+++.+.+.|.+.+...+..+++..  .+-....++ .+|+.+.|.+.|++
T Consensus       321 ------------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~--~~s~~l~~~-~~Gga~~p~l~G~~  378 (410)
T TIGR00885       321 ------------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTK--YGAAGLVMA-IIGGGIVPPLQGFI  378 (410)
T ss_pred             ------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--hhHHHHHHH-HhccchHHHHHHHH
Confidence                              11 224455677788888889999999999984432  222223333 38999999999999


Q ss_pred             hccc------cchhhHHHHHHHHHH
Q 045564          225 EDNL------SWRLGSGLNIAANLA  243 (296)
Q Consensus       225 ~~~~------gw~~~F~i~~~~~~~  243 (296)
                      .|..      +.+..|.++.++.+.
T Consensus       379 ~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       379 IDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             HHHhcccccCccchHHHHHHHHHHH
Confidence            9954      478889988876654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.69  E-value=5.7e-07  Score=84.26  Aligned_cols=104  Identities=10%  Similarity=-0.014  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHH
Q 045564           93 SNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIA  172 (296)
Q Consensus        93 ~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~  172 (296)
                      +.+....-+-|.++.+++-|| +|||+++.++.+++.+..+++..+-                  .++ .-...++.+|+
T Consensus       387 llitslaefPGlLIt~~iver-lGRKkTMal~l~~f~iflfll~~c~------------------~rn-~~tvllf~ara  446 (528)
T KOG0253|consen  387 LLITSLAEFPGLLITGVIVER-LGRKKTMALSLILFGIFLFLLTTCK------------------TRN-AYTVLLFTARA  446 (528)
T ss_pred             HHHHHHhhCCchhHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHhc------------------Ccc-hhHHHHHHHHH
Confidence            445566778889999999999 8999999999999988766655442                  111 11234566677


Q ss_pred             HHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 045564          173 LACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAF  221 (296)
Q Consensus       173 l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~  221 (296)
                      ++..+    ..+.+.|..|.||+ ..|+.+.+...-+.-+|++++|+++
T Consensus       447 fisg~----fqvaYvYtPEVyPT-avRatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  447 FISGA----FQVAYVYTPEVYPT-AVRATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             HHhch----heEEEEecCcccch-hhhhcchhhhhhHHhhhhhhhhHHH
Confidence            66544    44578899999995 4789999988778889999999988

>PRK11462 putative transporter; Provisional

Probab=98.68  E-value=4.8e-06  Score=81.15  Aligned_cols=131  Identities=8%  Similarity=-0.042  Sum_probs=81.2

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCc
Q 045564           77 YMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLC  156 (296)
Q Consensus        77 yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~  156 (296)
                      |.+..+|.+ ...+.+...+.++..++.+++++++|| +|+|+++..+..+..+..+++.+   .|.             
T Consensus       254 ~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~---~~~-------------  315 (460)
T PRK11462        254 YVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVISLAMFF---VPM-------------  315 (460)
T ss_pred             hhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHH---hch-------------
Confidence            444345543 333456677778888899999999999 79998877655544332222221   111             


Q ss_pred             CCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCC------ccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 045564          157 KAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEI------PQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSW  230 (296)
Q Consensus       157 ~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~------~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw  230 (296)
                           .+...+++..++.+++.++..+...++++|..+.      +++-+..++...++..+|..+|+.++|++.+..|+
T Consensus       316 -----~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        316 -----QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                 1122333444556777777677777888887761      21224446767788888988888888777654444

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.68  E-value=2.4e-07  Score=90.05  Aligned_cols=188  Identities=13%  Similarity=0.075  Sum_probs=124.1

Q ss_pred             ccCCchhHHHHHHHHH--H-hHHHhHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcch-HHHHHH
Q 045564           49 KRGGRTALLSRTVTCL--T-LGEGWVANLMVYMIQ-EFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGS-FQVIWI  123 (296)
Q Consensus        49 ~~~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~-~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR-~~~i~i  123 (296)
                      .+.+||.+++..+..+  . .++......-.|+.+ +.+-+.+..|++++...++..++.++.|+.+.| .|+ |+-++.
T Consensus        29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pli~  107 (488)
T KOG2325|consen   29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPLIV  107 (488)
T ss_pred             cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCHHH
Confidence            4679999988887777  3 333334445567754 366677788999999999999999999999999 675 777888


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHH
Q 045564          124 SSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFF  203 (296)
Q Consensus       124 ~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f  203 (296)
                      +.++.++|.++.......|.                  .....++++|++.|+|.|. .+..-+++++--- .+.|.+++
T Consensus       108 s~ii~~~g~llY~~l~~~~~------------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~-~~dR~rA~  167 (488)
T KOG2325|consen  108 SFLIAIIGNLLYLALAYVPN------------------GVKYLMLVARILTGVGVGN-FAVLRAYIADAST-VEDRPRAF  167 (488)
T ss_pred             HHHHHHHHHHHHHHHHhccc------------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccC-ccchHHHH
Confidence            89999999988733332332                  1457889999999999874 5667777887543 22456666


Q ss_pred             HHHHHHHHHHHHHHHHH----HHhhhccc---------cchhhHHHHHHHHHHHHHHH-HhCCCchhH
Q 045564          204 NWFFILTYASTVISSAA----FVYIEDNL---------SWRLGSGLNIAANLAGVVIF-LSGKHFYFP  257 (296)
Q Consensus       204 ~~~y~~~~iG~~i~p~v----~~~l~~~~---------gw~~~F~i~~~~~~~~~~~~-~~~~~~~~~  257 (296)
                      +....+..+|..+||.+    ++...+.+         -+..+=|+.++...+.++++ +..++.++.
T Consensus       168 a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  168 AATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG  235 (488)
T ss_pred             HHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence            65555445565566544    33322211         12344566666555555544 344445543

>PRK09848 glucuronide transporter; Provisional

Probab=98.68  E-value=1e-06  Score=85.11  Aligned_cols=143  Identities=11%  Similarity=0.018  Sum_probs=92.6

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh---cchHHHH-HHHHHHHHHHHHHHHhhccc
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSF---LGSFQVI-WISSFISLLGTILLDSTATF  141 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~---iGR~~~i-~i~~~l~~ig~~~la~~~~~  141 (296)
                      .+..+..+++.|+++.+|++..+++.+.++..+...+..++.|+++||.   +||||.+ .++.+...+..+++. .  .
T Consensus        23 ~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~-~--~   99 (448)
T PRK09848         23 AFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVF-W--V   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHH-h--C
Confidence            4444556788899999999999999999999999999999999999992   3777755 555554544333321 1  1


Q ss_pred             cCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHH-----HHHHHHH
Q 045564          142 DSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFIL-----TYASTVI  216 (296)
Q Consensus       142 p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~-----~~iG~~i  216 (296)
                      |...             +.......+++..++.+++.+...++..++..++.++.++|....++..++     .+++..+
T Consensus       100 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~  166 (448)
T PRK09848        100 PTDW-------------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLI  166 (448)
T ss_pred             cCCC-------------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2100             001112223444456677788777777777777776545677765554333     3455666


Q ss_pred             HHHHHHhh
Q 045564          217 SSAAFVYI  224 (296)
Q Consensus       217 ~p~v~~~l  224 (296)
                      +|.+.+..
T Consensus       167 ~p~i~~~~  174 (448)
T PRK09848        167 GPSIKNSS  174 (448)
T ss_pred             HHHHHHhC
Confidence            66665543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.67  E-value=2.2e-07  Score=86.22  Aligned_cols=126  Identities=13%  Similarity=0.110  Sum_probs=91.8

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ..+++..+.+.|+++.+|++..+++.+.++..+...++.+++|+++|| +|||+.+..+..+...+..++.+..  .   
T Consensus       240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~--~---  313 (366)
T TIGR00886       240 SFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAMGAFLVVLGL--V---  313 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHHHHHHHHhcC--C---
Confidence            566677888999999999999999998999999999999999999999 7999988877766666555444321  0   


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHH
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYAS  213 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG  213 (296)
                                   + ..+...+++..++.+++.|...+...+..++.+| + .++...++.+...++|
T Consensus       314 -------------~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~-~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       314 -------------S-PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-R-ATGAVSGLVGAIGNLG  365 (366)
T ss_pred             -------------C-cchHHHHHHHHHHHHHHhccccchhhhcchhhch-h-hcccHHHHHHHhccCC
Confidence                         0 0023344445555566666666667778888887 3 5788888776665554

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.66  E-value=1.7e-06  Score=83.93  Aligned_cols=142  Identities=12%  Similarity=0.075  Sum_probs=110.1

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ++....+.+..|.+..+|.+...+.........+..++.++..++++| +|+|+++.++.++.+++.+++.+..      
T Consensus       251 ~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~~~~f~~------  323 (467)
T COG2211         251 AFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYFTP------  323 (467)
T ss_pred             HHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHHHHHhhc------
Confidence            333344555667777889888888888888888888889999999999 7999999999999999988877653      


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCC------CccchhhHHHHHHHHHHHHHHHHHH
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFE------IPQHQGIFFNWFFILTYASTVISSA  219 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~------~~~~r~~~f~~~y~~~~iG~~i~p~  219 (296)
                                     ..+..++++..++.++|.+...+...++++|..+      ..++-+..++.+.+..=+|..++..
T Consensus       324 ---------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~  388 (467)
T COG2211         324 ---------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGF  388 (467)
T ss_pred             ---------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence                           1245677788889999999999999999999887      1123345666677777788888887


Q ss_pred             HHHhhhcccc
Q 045564          220 AFVYIEDNLS  229 (296)
Q Consensus       220 v~~~l~~~~g  229 (296)
                      +.|++....|
T Consensus       389 ~~g~~L~~~G  398 (467)
T COG2211         389 IPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHcC
Confidence            7777765444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.57  E-value=1.1e-05  Score=77.32  Aligned_cols=158  Identities=11%  Similarity=-0.039  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccC
Q 045564           71 VANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCD  150 (296)
Q Consensus        71 ~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~  150 (296)
                      ..+...|+++.-|.+....+.+.++..+.-...-.+.+++-.| +|-++++.++.+.+++=..+.+... -|.       
T Consensus       227 ~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l~a~~~-~~~-------  297 (400)
T PF03825_consen  227 YTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLLYAYFS-DPW-------  297 (400)
T ss_pred             HHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhc-CCc-------
Confidence            3566778876555777777777777788888888889999999 7999999999998887665555442 010       


Q ss_pred             CCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHH-HHHHHHHHHHHHHhhhcccc
Q 045564          151 IGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFIL-TYASTVISSAAFVYIEDNLS  229 (296)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~-~~iG~~i~p~v~~~l~~~~g  229 (296)
                                .......+.+..+-|+..|........++.+..|+ +.|.++-+++... ..+|..+|.+++|++.|++|
T Consensus       298 ----------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~-~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  298 ----------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP-ELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             ----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence                      01122334445678888888999999999999994 4788999986654 45899999999999999876


Q ss_pred             chh------hHHHHHHHHHHHHHHH
Q 045564          230 WRL------GSGLNIAANLAGVVIF  248 (296)
Q Consensus       230 w~~------~F~i~~~~~~~~~~~~  248 (296)
                      -+.      .+.+.+++.++..+++
T Consensus       367 ~~~~~~~~~~~~v~a~~~~~~~~~f  391 (400)
T PF03825_consen  367 ARGMFDWSAVFLVFAVMALVILVLF  391 (400)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHH
Confidence            443      3445555444444444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.55  E-value=3.8e-06  Score=78.85  Aligned_cols=164  Identities=13%  Similarity=0.069  Sum_probs=111.1

Q ss_pred             hHHHhHHHHH-HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCC
Q 045564           66 LGEGWVANLM-VYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        66 ~~y~~~~~l~-~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~  144 (296)
                      ...++..++. .-+....|.+..+...+......+..++.-..|.++|+ +|||+.+.+..+...+.-.+   +..-|  
T Consensus        91 ~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~i---s~~sp--  164 (528)
T KOG0253|consen   91 AMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVI---SGASP--  164 (528)
T ss_pred             HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHh---hcCCC--
Confidence            4444444433 34455678888899999999999999999999999999 89999988876655442222   11112  


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                                        ++..+++.|.+.++|.|+ .|...+.-.|..|.. .|....-.. .-..+|.++.-.+.=..
T Consensus       165 ------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~-~r~~~~V~~-~~waig~v~ea~law~v  223 (528)
T KOG0253|consen  165 ------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSS-HRWLLTVMS-FFWAIGQVFEALLAWGV  223 (528)
T ss_pred             ------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCc-CCCcchhHH-HHHHHHHHHHHHHHHHH
Confidence                              345678889999999998 888889999988843 233322222 33456777776666555


Q ss_pred             hccccchhhHHHHHH-HHHHHHHH-HHhCCCchh
Q 045564          225 EDNLSWRLGSGLNIA-ANLAGVVI-FLSGKHFYF  256 (296)
Q Consensus       225 ~~~~gw~~~F~i~~~-~~~~~~~~-~~~~~~~~~  256 (296)
                      ..+.||||-...... .++.+.+. .+.++|||.
T Consensus       224 m~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~  257 (528)
T KOG0253|consen  224 MSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFY  257 (528)
T ss_pred             HHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchh
Confidence            677899987555444 33333333 356788886

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.54  E-value=1.4e-05  Score=75.51  Aligned_cols=137  Identities=13%  Similarity=0.017  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCC
Q 045564           72 ANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDI  151 (296)
Q Consensus        72 ~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~  151 (296)
                      ...+.|+.+.+|.+..+.+........+..++.++.+++.|| +||+...  +.....++.+.+........        
T Consensus       228 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~--------  296 (394)
T PRK11652        228 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMWQ--SVICCLLAGLLMWIPGWFGV--------  296 (394)
T ss_pred             HhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHhcc--------
Confidence            345667888899999998888777777788888888888888 5743322  22222222222221110000        


Q ss_pred             CCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccch
Q 045564          152 GLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWR  231 (296)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~  231 (296)
                                .+...++++.++.++|.+...+...+...|.+| + .++...++.+...++|+.+++.+.+++.+...+.
T Consensus       297 ----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~-~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~  364 (394)
T PRK11652        297 ----------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-Y-LAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFS  364 (394)
T ss_pred             ----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-c-cchHHHHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence                      122445666778888888888999998889887 3 5688888888888999999999999887654333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.49  E-value=7.9e-06  Score=80.00  Aligned_cols=173  Identities=8%  Similarity=-0.071  Sum_probs=117.8

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHH----HhhhhcchHHH--HHHHHHHHHHHHHHH
Q 045564           66 LGEGWVANLMVYMIQEFHITSIN----SALISNIVNGFVNLFPVLGAI----IADSFLGSFQV--IWISSFISLLGTILL  135 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~----a~~i~~~~~~~~~~~~l~~G~----laDr~iGR~~~--i~i~~~l~~ig~~~l  135 (296)
                      .+....+.++.|..+..+.+...    .+++.++..+...+..++..+    +.||..+.+..  +.+|.++..++.+.+
T Consensus       287 ~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~  366 (475)
T TIGR00924       287 LYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTF  366 (475)
T ss_pred             HHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            44445566777777665544222    556677777766666666444    44441122333  377888888887777


Q ss_pred             HhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHH
Q 045564          136 DSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTV  215 (296)
Q Consensus       136 a~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~  215 (296)
                      ++.....              +.+...+.+.+....++.++|.....|...++.+++.|+ +.|+..++.++.+..+|..
T Consensus       367 ~~~~~~~--------------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~-~~~g~~~g~~~l~~~~g~~  431 (475)
T TIGR00924       367 AASIWFA--------------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ-RLMGQMLGMWFLAQAMGSL  431 (475)
T ss_pred             HHHHhhc--------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHH
Confidence            6542110              000112456678888999999999999999999999994 4799999999999999999


Q ss_pred             HHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCC
Q 045564          216 ISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKH  253 (296)
Q Consensus       216 i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~~~  253 (296)
                      +++.+.....+..+|...|...++++++..++++...|
T Consensus       432 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       432 LGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99988887777668888887777766555555544444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.48  E-value=1.6e-06  Score=83.17  Aligned_cols=159  Identities=14%  Similarity=0.062  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHH--HHHHHHhhccccCCCCC
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLL--GTILLDSTATFDSLRPQ  147 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~i--g~~~la~~~~~p~~~~~  147 (296)
                      ..++.+.+++++.|++.++.+.+.++..+...+.+++.|.++|| +|.||-+++...+..+  |-......  .|.+.  
T Consensus        26 ~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~l~~pff~~v~--~pll~--  100 (412)
T PF01306_consen   26 FLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLLLFGPFFIYVF--GPLLQ--  100 (412)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHHTCHHHHHHTH--HHHHH--
T ss_pred             HHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHH--
Confidence            45778899999999999999999999999999999999999999 7977765544332211  11111111  12210  


Q ss_pred             ccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhh--HHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          148 RCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGI--FFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       148 ~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~--~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                       .-++++.++.++..+.......+ +.|.+-+|..|..  =|+---+-..+|-+++..++|++.
T Consensus       101 -----------------~n~~lg~iig~i~l~~~f~~~~~-~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~  162 (412)
T PF01306_consen  101 -----------------SNFWLGAIIGGIYLGLVFNAGVP-LSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILF  162 (412)
T ss_dssp             -----------------TT-HHHHHHTTTTTTTTTTTHHH-HHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHcccch-HHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheee
Confidence                             01223333333333322221111 1243332212222  223333445778888888899887


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHhCC
Q 045564          226 DNLSWRLGSGLNIAANLAGVVIFLSGK  252 (296)
Q Consensus       226 ~~~gw~~~F~i~~~~~~~~~~~~~~~~  252 (296)
                      + .+-+..||+..+..++..++.+..+
T Consensus       163 ~-i~p~~~fwi~s~~~~il~lll~~~~  188 (412)
T PF01306_consen  163 N-INPNIIFWIASAAAIILLLLLLLLK  188 (412)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred             e-eCccHHHHHHHHHHHHHHHHHHHcC
Confidence            5 3556788987765444444444443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.46  E-value=1.3e-05  Score=72.07  Aligned_cols=149  Identities=12%  Similarity=0.077  Sum_probs=98.3

Q ss_pred             chhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHH
Q 045564           53 RTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLL  130 (296)
Q Consensus        53 ~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~i  130 (296)
                      |-.+...+.+.. . +.|....+ ...+++.+|+|++|...+...-.++..++ ++.|.+.|+ +|.+.++.+|.+...+
T Consensus         2 W~~l~a~~~v~~~~Gt~Y~Fs~y-S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~~~   78 (250)
T PF06813_consen    2 WLSLVASIWVQLCSGTTYTFSAY-SPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLGFV   78 (250)
T ss_pred             hhhHHHHHHHHHhcCcccchhhh-hHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHHHH
Confidence            444444444445 4 66654433 44778899999999999999999988875 788999999 7999999999999999


Q ss_pred             HHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHH
Q 045564          131 GTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILT  210 (296)
Q Consensus       131 g~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~  210 (296)
                      |+.++.++.. ...              + ....+.+.+...+.+.+.+......-....+-||+  .|+...++.--..
T Consensus        79 GY~~~~l~~~-~~i--------------~-~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~--~RG~vvgilk~~~  140 (250)
T PF06813_consen   79 GYGLLWLAVS-GRI--------------P-SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR--SRGTVVGILKGFF  140 (250)
T ss_pred             HHHHHHHHHh-Ccc--------------C-ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc--ccCceehhhhHHH
Confidence            9998887631 000              0 01234444444555555554444444445578983  4788887754444


Q ss_pred             HHHHHHHHHHHH
Q 045564          211 YASTVISSAAFV  222 (296)
Q Consensus       211 ~iG~~i~p~v~~  222 (296)
                      .+++.+-..+..
T Consensus       141 GLSaai~t~i~~  152 (250)
T PF06813_consen  141 GLSAAIFTQIYS  152 (250)
T ss_pred             HhHHHHHHHHHH
Confidence            555544333333

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.45  E-value=1.2e-05  Score=70.14  Aligned_cols=142  Identities=19%  Similarity=0.209  Sum_probs=102.5

Q ss_pred             HHHHhCCCh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcC
Q 045564           78 MIQEFHITS--INSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSL  155 (296)
Q Consensus        78 l~~~lg~s~--~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~  155 (296)
                      ....++.+.  ...+...+.+.....++.++.|.++|| +|||+.+..+.....++.++..+..   .            
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~---~------------   91 (338)
T COG0477          28 LLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAP---N------------   91 (338)
T ss_pred             HHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCc---c------------
Confidence            334455544  477888888999999999999999999 5999888888766555534333322   0            


Q ss_pred             cCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHH-HHHHHHHHHHHHHHhhhcc--ccchh
Q 045564          156 CKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFI-LTYASTVISSAAFVYIEDN--LSWRL  232 (296)
Q Consensus       156 ~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~-~~~iG~~i~p~v~~~l~~~--~gw~~  232 (296)
                            .....+++.|++.|++.+...+...+++.|.+|++..|+...+.... ...+|..++|.+.+.+...  .+|++
T Consensus        92 ------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (338)
T COG0477          92 ------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRA  165 (338)
T ss_pred             ------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence                  13467788888899999999999999999999840256777777666 4677888888776666543  57888


Q ss_pred             hHHHHHHHH
Q 045564          233 GSGLNIAAN  241 (296)
Q Consensus       233 ~F~i~~~~~  241 (296)
                      .|.+.....
T Consensus       166 ~~~~~~~~~  174 (338)
T COG0477         166 AFLLAALLG  174 (338)
T ss_pred             HHHHHHHHH
Confidence            666665544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.42  E-value=2.2e-05  Score=74.67  Aligned_cols=162  Identities=14%  Similarity=0.071  Sum_probs=127.5

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      +++.--..+-+|--+.||++..+.+.+...+.++..++-.+.|++..|..|.+++-.+++.+..++..++.++...    
T Consensus       223 a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~----  298 (403)
T PF03209_consen  223 AFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL----  298 (403)
T ss_pred             HHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            4444444555777888999999999999999999999999999998865899999999999999888887776521    


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                      .+.+.|..+.+++|++.|......-+.+-|+-. +++.+...+.+..+..++..+|..++|.+.
T Consensus       299 ----------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~-~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~  361 (403)
T PF03209_consen  299 ----------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTS-AGRAGLFMGAWGAAQAIARGLGTFLGGALR  361 (403)
T ss_pred             ----------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            234678889999999999988888888888886 345778888888888888888887777665


Q ss_pred             cc----------ccchhhHHHHHHHHHHHHHHH
Q 045564          226 DN----------LSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       226 ~~----------~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      |-          .+|..+|.+-++.+++++++.
T Consensus       362 D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  362 DLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            41          346677777777776666554

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.41  E-value=1.9e-05  Score=75.83  Aligned_cols=157  Identities=11%  Similarity=0.064  Sum_probs=118.1

Q ss_pred             hHHHhHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhcccc
Q 045564           66 LGEGWVANLMVYMIQEFH---ITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFD  142 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg---~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p  142 (296)
                      .|+..-...+.|.+..++   .+....+.+.++..+.-.+.-.+..++-+| +|-|+.++++.++..+=.+.++++.   
T Consensus       235 ~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i~~iRi~~~~~~~---  310 (412)
T PF01306_consen  235 IYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVIMAIRIIGSGFAT---  310 (412)
T ss_dssp             HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHHHHHHHHHHhhhc---
Confidence            455444456777776544   234445677888888888888999999999 7999999999988887655555442   


Q ss_pred             CCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHH-HHHHHHHHHHHHHHHH
Q 045564          143 SLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNW-FFILTYASTVISSAAF  221 (296)
Q Consensus       143 ~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~-~y~~~~iG~~i~p~v~  221 (296)
                                          +.+.+.+...+-++-.+......--++++.||+| ...+.+.+ +.++..+|..+.+.++
T Consensus       311 --------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~r-lsAt~y~v~~~~~~~~~~~i~s~~~  369 (412)
T PF01306_consen  311 --------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKR-LSATLYLVGFQFAKQIGIIILSPLA  369 (412)
T ss_dssp             --------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GG-GHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             --------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh-HHHHHHHHHHHHHHHHHHHHHhhhH
Confidence                                3456777788888888888888899999999854 56677777 5688889999999999


Q ss_pred             HhhhccccchhhHHHHHHHHHHHHHH
Q 045564          222 VYIEDNLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       222 ~~l~~~~gw~~~F~i~~~~~~~~~~~  247 (296)
                      |++.|+.|++..|++.+.+.++..++
T Consensus       370 G~lyd~~G~~~tylimg~iv~~~~li  395 (412)
T PF01306_consen  370 GYLYDRIGFQHTYLIMGLIVLPFTLI  395 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHhhcCcHHHHHHHHHHHHHHHHH
Confidence            99999999999998877655544433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.32  E-value=2.1e-05  Score=76.38  Aligned_cols=175  Identities=11%  Similarity=0.089  Sum_probs=119.2

Q ss_pred             hhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh---cchHHH-HHHHHHH
Q 045564           54 TALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSF---LGSFQV-IWISSFI  127 (296)
Q Consensus        54 ~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~---iGR~~~-i~i~~~l  127 (296)
                      ..+....+-.. + .+-.+..++..|.++.+|++...++.+..+.=+.-++.-|+.|.++||.   +||+|- ++++.+.
T Consensus        13 eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip   92 (467)
T COG2211          13 EKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIP   92 (467)
T ss_pred             HHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHH
Confidence            33444444333 4 4455677889999999999999999999999999999999999999973   587665 5566677


Q ss_pred             HHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHH
Q 045564          128 SLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFF  207 (296)
Q Consensus       128 ~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y  207 (296)
                      .++...++..+.   .+.              .+....-.++-.++.+++...+..+-.++.+++-++.++|.+..+|..
T Consensus        93 ~~i~~~l~F~~p---~~~--------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~  155 (467)
T COG2211          93 FAIVAVLLFITP---DFS--------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRM  155 (467)
T ss_pred             HHHHHHHHHcCC---Ccc--------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHH
Confidence            766555544432   110              012233444556678888888888888999999887778999999988


Q ss_pred             HHHHHHHHHHHHHHHhhhc-------cccchhhHHHHHHHHHHHH
Q 045564          208 ILTYASTVISSAAFVYIED-------NLSWRLGSGLNIAANLAGV  245 (296)
Q Consensus       208 ~~~~iG~~i~p~v~~~l~~-------~~gw~~~F~i~~~~~~~~~  245 (296)
                      +..++|..+...+.+.+..       ..||+..-++..++..+.+
T Consensus       156 ~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~  200 (467)
T COG2211         156 VFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILL  200 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHH
Confidence            8888886665554444432       2245544444444433333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.32  E-value=2.9e-05  Score=73.63  Aligned_cols=138  Identities=11%  Similarity=0.030  Sum_probs=106.0

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRC  149 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c  149 (296)
                      +.++++.|+.+..|++..+++..++.+-++..+|-.++-++-.| +-..|.+.+.++...+-.+..++..          
T Consensus       255 ~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~~~~~l~~----------  323 (422)
T COG0738         255 IGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLLLAVALIG----------  323 (422)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence            45788999998899999999999999999999999999999889 7888888877765544222222221          


Q ss_pred             CCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 045564          150 DIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLS  229 (296)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~g  229 (296)
                                   + ..-+.+.++.|+..+.+.|.+.+...+-.|++...+++.   -....+|+.+-|.+.|++.|..|
T Consensus       324 -------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts~~s~~---l~maivGGAiiP~l~G~i~d~~g  386 (422)
T COG0738         324 -------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVGSGL---LVMAIVGGAIIPPLQGVIADMFG  386 (422)
T ss_pred             -------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccccccee---eeeheecchHHHHHHHHHHHhhh
Confidence                         1 233445678889999999999999999998554455544   23345688889999999999988


Q ss_pred             chhhHH
Q 045564          230 WRLGSG  235 (296)
Q Consensus       230 w~~~F~  235 (296)
                      -...+.
T Consensus       387 ~~~~~~  392 (422)
T COG0738         387 IQLTFL  392 (422)
T ss_pred             hHHHHH
Confidence            777766

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.29  E-value=9.9e-05  Score=70.74  Aligned_cols=155  Identities=20%  Similarity=0.089  Sum_probs=97.4

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .+++....+|.|+.+.+|.+..+.++......++..++..+.+.+.++ .+++|.+.....+..+|.+++.+.....   
T Consensus       233 ~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~ig~~l~~~~~~~~---  308 (413)
T PRK15403        233 PMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKD-PTEPRFIWRAVPIQLVGLALLIVGNLLW---  308 (413)
T ss_pred             HHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHc---
Confidence            566666777889999999999999888776777777777777766544 2444444444444444544443321000   


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                                   +  .....++++.++.++|.+...|+.....-.+.+  ..+++..+.+......+..+++.+.+++.
T Consensus       309 -------------~--~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~--~~~G~a~a~~~~~~~~~~~~~~~~~g~~~  371 (413)
T PRK15403        309 -------------P--HVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNN--LPKGTVSASLNMVILMVMAVSVEIGRWLW  371 (413)
T ss_pred             -------------c--ccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         0  112234567778888888888877753333332  23566666666666677778888888887


Q ss_pred             ccccchhhHHHHHHHHH
Q 045564          226 DNLSWRLGSGLNIAANL  242 (296)
Q Consensus       226 ~~~gw~~~F~i~~~~~~  242 (296)
                      ++ +-.++|.+..++..
T Consensus       372 ~~-~~~~~~~~~~~~~~  387 (413)
T PRK15403        372 FN-GGRLPFHLLAVVAG  387 (413)
T ss_pred             Hc-CCchHHHHHHHHHH
Confidence            65 55667766655444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.26  E-value=6.5e-05  Score=74.06  Aligned_cols=149  Identities=13%  Similarity=0.003  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhh
Q 045564           89 SALISNIVNGFVNLFPVLG----AIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQF  164 (296)
Q Consensus        89 a~~i~~~~~~~~~~~~l~~----G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~  164 (296)
                      .+++.++..+...+..++.    +++.|| ++..+.+.++.++..+|.+.+.+....+.              .....+.
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l~~l~f~~l~~~~~~~~--------------~~~~vs~  382 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVLCSGAFLVLPLGAKFAN--------------DAGIVSV  382 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CCCccCH
Confidence            4455566666666666666    555666 56668899999999999888776532110              0011234


Q ss_pred             HHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhc----------cccchhhH
Q 045564          165 AVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIED----------NLSWRLGS  234 (296)
Q Consensus       165 ~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~----------~~gw~~~F  234 (296)
                      +.+....++.++|.+...|...+++.++.|+ +.|+..++.++++..+|+.++..+.+....          ..++.+.|
T Consensus       383 ~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~-~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f  461 (500)
T PRK09584        383 NWLIASYGLQSIGELMISGLGLAMVAQLVPQ-RLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVF  461 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHH
Confidence            4677788899999999999999999999994 489999999888888887777666643221          11356677


Q ss_pred             HHHHHHHHHHHHHHHhCCC
Q 045564          235 GLNIAANLAGVVIFLSGKH  253 (296)
Q Consensus       235 ~i~~~~~~~~~~~~~~~~~  253 (296)
                      ...++..++..++++...|
T Consensus       462 ~~~~~~~~~~a~~~~~~~~  480 (500)
T PRK09584        462 LQIGIATAVIAVLMLLTAP  480 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7666654433333433333

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.25  E-value=3.3e-05  Score=74.86  Aligned_cols=153  Identities=12%  Similarity=0.120  Sum_probs=108.9

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh--cc--hHHHHHHHHHHHHHHHHHHHhhccccCCCCCc
Q 045564           73 NLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSF--LG--SFQVIWISSFISLLGTILLDSTATFDSLRPQR  148 (296)
Q Consensus        73 ~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~--iG--R~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~  148 (296)
                      ....|+++++|+++++.....++...--.+ -++.|.++|.+  +|  ||+-++++.++..++.+.+++.   |...   
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~---~~~~---   83 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL---PASE---   83 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhc---cccc---
Confidence            344588999999999987776666655444 45679999994  35  4445566666665544444432   2210   


Q ss_pred             cCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCC-CccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 045564          149 CDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFE-IPQHQGIFFNWFFILTYASTVISSAAFVYIEDN  227 (296)
Q Consensus       149 c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~-~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~  227 (296)
                                   .+.....+..++..+|........-++..|.-. ++..|+..-++.+....+|++++..+.|++.+.
T Consensus        84 -------------~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~  150 (433)
T PF03092_consen   84 -------------SSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS  150 (433)
T ss_pred             -------------chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence                         122344455667788888888889999998876 233377888888889999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHHH
Q 045564          228 LSWRLGSGLNIAANLAGV  245 (296)
Q Consensus       228 ~gw~~~F~i~~~~~~~~~  245 (296)
                      .++++.|.+.+++..+.+
T Consensus       151 ~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen  151 FGPQGVFLISAALPLLML  168 (433)
T ss_pred             CCCeEEehHHHHHHHHHH
Confidence            999999999877655544

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.22  E-value=1.8e-07  Score=92.89  Aligned_cols=189  Identities=14%  Similarity=0.120  Sum_probs=2.9

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccc-cCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATF-DSL  144 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~-p~~  144 (296)
                      ..++......+-+++.++++.++++++.+.+-++..+..++..++++| --|-|-+-++.++..+|.++.+++.++ +.+
T Consensus        17 ~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lPhf~~~~y   95 (539)
T PF03137_consen   17 MVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALPHFLSGPY   95 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence            444444555567888999999999999999999999999999999999 467778889999999999999887543 111


Q ss_pred             CCC-----cc--CCCCcCc-------------------CCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccc
Q 045564          145 RPQ-----RC--DIGLSLC-------------------KAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQH  198 (296)
Q Consensus       145 ~~~-----~c--~~~~~~~-------------------~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~  198 (296)
                      ...     .|  +....+|                   +.....-+.+++++.++.|+|.....+...+|+=|-.+++ .
T Consensus        96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~-~  174 (539)
T PF03137_consen   96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK-N  174 (539)
T ss_dssp             --------------------------------------------------------SSS---------------------
T ss_pred             ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccc-c
Confidence            100     00  0001122                   1111112456788899999999999999999999988743 4


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhcc---------------------c-cchhhHHHHHHHHHHHHHHHHhCCCchh
Q 045564          199 QGIFFNWFFILTYASTVISSAAFVYIEDN---------------------L-SWRLGSGLNIAANLAGVVIFLSGKHFYF  256 (296)
Q Consensus       199 r~~~f~~~y~~~~iG~~i~p~v~~~l~~~---------------------~-gw~~~F~i~~~~~~~~~~~~~~~~~~~~  256 (296)
                      -....++++.+..+|..+|.++++...+.                     . .|+.+|.+.+++.++..+.++.+.|+.+
T Consensus       175 splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp  254 (539)
T PF03137_consen  175 SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP  254 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence            55677888888888998888877755421                     1 2888898888877666655544444443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.16  E-value=2e-05  Score=80.06  Aligned_cols=189  Identities=15%  Similarity=0.155  Sum_probs=138.7

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCC-
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSL-  144 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~-  144 (296)
                      .+.+......+-+.+.++++..+.+.+.+.+-++..+..++..+.+-| .-|-|.+-+|.++..+|.++.+++.++..- 
T Consensus       111 l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y  189 (735)
T KOG3626|consen  111 LYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGLGSLLFALPHFFSGPY  189 (735)
T ss_pred             hhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHHHHHHHhChHHhcCcc
Confidence            444666777788889999999999999999999999999999999999 577788999999999999999887432100 


Q ss_pred             ------------CC----Cc--cCCCC-------cCcC---CCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCc
Q 045564          145 ------------RP----QR--CDIGL-------SLCK---APSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIP  196 (296)
Q Consensus       145 ------------~~----~~--c~~~~-------~~~~---~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~  196 (296)
                                  .+    ..  |++.+       ..+.   .++..-+.+++++.++.|+|...+.+...+++=|-.. +
T Consensus       190 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk-~  268 (735)
T KOG3626|consen  190 EYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVK-K  268 (735)
T ss_pred             hhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcccccccc-c
Confidence                        00    00  11111       1111   1111123467888999999999999998898888665 3


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhhcc------------------c-cchhhHHHHHHHHHHHHHHHHhCCCchh
Q 045564          197 QHQGIFFNWFFILTYASTVISSAAFVYIEDN------------------L-SWRLGSGLNIAANLAGVVIFLSGKHFYF  256 (296)
Q Consensus       197 ~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~------------------~-gw~~~F~i~~~~~~~~~~~~~~~~~~~~  256 (296)
                      +.-...+++++....+|.++|.+++++..+-                  . -|+.+|++.+++.++..+.++++.+..+
T Consensus       269 ~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  269 KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence            3456678888888889999999888877531                  1 2888899999888777777766655554

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=5.9e-06  Score=78.11  Aligned_cols=149  Identities=11%  Similarity=-0.036  Sum_probs=105.7

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--hHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLG--SFQVIWISSFISLLGTILLDSTATFDSLRPQ  147 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iG--R~~~i~i~~~l~~ig~~~la~~~~~p~~~~~  147 (296)
                      .-..++.++.+.+..+..+.+.+-.-..+...++..+.|.++|| +|  |...-..+.  .++|.....    .|..   
T Consensus       289 LePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k-~~~~~wl~~~~gl--~~~G~~~~~----iP~~---  358 (464)
T KOG3764|consen  289 LEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADK-YPHLRWLLSLGGL--ATVGVSSGP----IPFA---  358 (464)
T ss_pred             hCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHh-cCchhHHHHHHHH--HHHHHHhch----hHhh---
Confidence            34556778888888777788887777888899999999999999 69  533333333  333422222    2221   


Q ss_pred             ccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCcc-----chhhHHHHHHHHHHHHHHHHHHHHH
Q 045564          148 RCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQ-----HQGIFFNWFFILTYASTVISSAAFV  222 (296)
Q Consensus       148 ~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~-----~r~~~f~~~y~~~~iG~~i~p~v~~  222 (296)
                                    .+...+++-+...+++.+...+..-...+.+.+.|+     .-++.+++.-.+..+|..+||.++|
T Consensus       359 --------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg  424 (464)
T KOG3764|consen  359 --------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGG  424 (464)
T ss_pred             --------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccc
Confidence                          134456666677777777777777666777776332     4578888989999999999999999


Q ss_pred             hhhccccchhhHHHHHHHHH
Q 045564          223 YIEDNLSWRLGSGLNIAANL  242 (296)
Q Consensus       223 ~l~~~~gw~~~F~i~~~~~~  242 (296)
                      .+.+..|++|.-.+-++..+
T Consensus       425 ~iv~~iGF~wl~~iig~~n~  444 (464)
T KOG3764|consen  425 SLVEAIGFEWLMTIIGILNL  444 (464)
T ss_pred             hheeehhHHHHHHHHHHHHH
Confidence            99999999987665555433

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.12  E-value=3.6e-05  Score=75.78  Aligned_cols=151  Identities=13%  Similarity=0.062  Sum_probs=92.2

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh---cchHHHHHHHHHHHH-HHHHHHHhhccc
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSF---LGSFQVIWISSFISL-LGTILLDSTATF  141 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~---iGR~~~i~i~~~l~~-ig~~~la~~~~~  141 (296)
                      ..|+...+++.|+++..|+|..++..+...+.++..++.+++|+++||.   ..+|..+.....++. +|.+.+..... 
T Consensus       288 v~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~-  366 (495)
T KOG2533|consen  288 VNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAV-  366 (495)
T ss_pred             ccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-
Confidence            7788889999999997789999999999999999999999999999993   345555544444333 33333322210 


Q ss_pred             cCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHH-
Q 045564          142 DSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAA-  220 (296)
Q Consensus       142 p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v-  220 (296)
                                            ......+.+....+.+...++......+......+|-+..+.+..+.+.+++++|.+ 
T Consensus       367 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~  424 (495)
T KOG2533|consen  367 ----------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLF  424 (495)
T ss_pred             ----------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhc
Confidence                                  011111112222233333344444444444434445556665666666665555543 


Q ss_pred             HHhhhccccchhhHHHHHH
Q 045564          221 FVYIEDNLSWRLGSGLNIA  239 (296)
Q Consensus       221 ~~~l~~~~gw~~~F~i~~~  239 (296)
                      .+.....++|.+.|.+...
T Consensus       425 ~~~~ap~y~~~~~f~~~~~  443 (495)
T KOG2533|consen  425 RSLDAPRYGWGAVFYMLVA  443 (495)
T ss_pred             ccccCcchhhhhHHHHHHH
Confidence            4555556788888855444

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.11  E-value=0.00021  Score=68.71  Aligned_cols=156  Identities=12%  Similarity=0.008  Sum_probs=102.7

Q ss_pred             cCCchhHHHHHHHHH-H-------hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHH
Q 045564           50 RGGRTALLSRTVTCL-T-------LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVI  121 (296)
Q Consensus        50 ~~~~~~~~~l~~~~~-~-------~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i  121 (296)
                      |-++|.++.+....+ +       ..|+.+.   .|..+.+| +...+.|...+|...+....+.+-|+.|+ +|-|.+.
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~---n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~  112 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPIN---NYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTAL  112 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHH---HHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHH
Confidence            345566555555444 2       2343333   37777777 66777889999999999999999999999 7999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhh-hccCCCccchh
Q 045564          122 WISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMG-ANQFEIPQHQG  200 (296)
Q Consensus       122 ~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~-ad~f~~~~~r~  200 (296)
                      +++.++-.+|..+=.++. .|...+              ..-..+...|..+.+...-.... .|+-+ +-+|+++ +|.
T Consensus       113 llgt~ln~iGa~Ir~iss-~p~v~~--------------~f~~~l~~~Gq~iaa~Aq~Fim~-lPskiA~~WF~~~-qra  175 (480)
T KOG2563|consen  113 LLGTVLNGIGAWIRLISS-LPFVPP--------------LFRRPLTHTGQSIAAAAQPFILG-LPSKIAAVWFPPD-QRA  175 (480)
T ss_pred             HHHHHHHHHHHHHhhhcc-Cccccc--------------cchhhhhHHhHHHHHHhhhHhhc-cccHHHHhhCCcc-hhh
Confidence            999999999998877765 343211              00112455565555554443332 33333 3455544 677


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 045564          201 IFFNWFFILTYASTVISSAAFVYIEDN  227 (296)
Q Consensus       201 ~~f~~~y~~~~iG~~i~p~v~~~l~~~  227 (296)
                      ++-..--+++.+|..++.++...+..+
T Consensus       176 ~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  176 IATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             hhhhHHHhcchHHHHHHhhccceecCC
Confidence            777776667778877777766666544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.11  E-value=0.00015  Score=71.37  Aligned_cols=175  Identities=14%  Similarity=0.038  Sum_probs=109.9

Q ss_pred             hHHHhHHHHHHHHHHHhCCChh----HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHH-------HHHHHHHHHHHHHHH
Q 045564           66 LGEGWVANLMVYMIQEFHITSI----NSALISNIVNGFVNLFPVLGAIIADSFLGSFQ-------VIWISSFISLLGTIL  134 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~----~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~-------~i~i~~~l~~ig~~~  134 (296)
                      .+......++.|..+..+.+..    ...++.++..+...+..++.|++.|| +|||+       -+.+|.++..++.+.
T Consensus       284 ~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~r-l~~r~~~~~~~~k~~~G~~l~~~~~~~  362 (489)
T PRK10207        284 LYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTH-LGSKGKDLSMPMKFTLGMFLCSLGFLT  362 (489)
T ss_pred             HHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHH-HhhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            4444446677777654333211    23445555556676777778999999 79887       377788887777665


Q ss_pred             HHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHH
Q 045564          135 LDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYAST  214 (296)
Q Consensus       135 la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~  214 (296)
                      ++....  .+..        .. .  ..+.+.+....++.++|.+...+...+++.+..|+ +.++.+.+.+++..++|.
T Consensus       363 ~~~~~~--~~~~--------~~-~--~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~-~~~g~~~g~~~l~~~ig~  428 (489)
T PRK10207        363 AAAAGM--WFAD--------AQ-G--LTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQ-HLMGFILGMWFLTQAAAF  428 (489)
T ss_pred             HHHHHH--hhcC--------CC-C--ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHH
Confidence            543210  0000        00 0  11334455667889999999999999999999994 478889999999999999


Q ss_pred             HHHHHHHHhhhc----------cccchhhHHHHHHHHHHHHHHHHhCCCch
Q 045564          215 VISSAAFVYIED----------NLSWRLGSGLNIAANLAGVVIFLSGKHFY  255 (296)
Q Consensus       215 ~i~p~v~~~l~~----------~~gw~~~F~i~~~~~~~~~~~~~~~~~~~  255 (296)
                      .+|..++.+...          ...+.+.|...++..++..++++...|+.
T Consensus       429 ~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~  479 (489)
T PRK10207        429 LLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWL  479 (489)
T ss_pred             HHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998887765521          11234556655554444444444434433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.09  E-value=1.7e-08  Score=97.02  Aligned_cols=161  Identities=14%  Similarity=0.070  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRC  149 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c  149 (296)
                      ...+..+++.+..+.+..  ........+...++.+++.++.|| +|||+.++++.++..++.+.+.... .+..     
T Consensus       271 ~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~~~~~~~~-~~~~-----  341 (451)
T PF00083_consen  271 FIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICSLILGIIF-FLGV-----  341 (451)
T ss_pred             cccccccccccccccccc--cccccccccccccccccccccccc-ccccccccccccccccccccccccc-cccc-----
Confidence            344444455566676666  223334445566777788899999 7999999998887776555443100 0000     


Q ss_pred             CCCCcCcCCCCchhhHHHHHHHHHHHHhhc-hhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 045564          150 DIGLSLCKAPSKVQFAVLYSGIALACLGLG-GLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNL  228 (296)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~l~gig~g-~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~  228 (296)
                             +.+...+.. .++...+...+.+ +..+....+.+|+||++ .|.++.++.+....+++.++|.+..++.+..
T Consensus       342 -------~~~~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~-~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~  412 (451)
T PF00083_consen  342 -------SSSSWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTK-VRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL  412 (451)
T ss_pred             -------ccccccccc-cceeeeecccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence                   000000111 1111112212222 34456668889999955 7899999888888889999998888888776


Q ss_pred             cchhhHHHHHHHHHHHHHHH
Q 045564          229 SWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       229 gw~~~F~i~~~~~~~~~~~~  248 (296)
                      +-...|.+.++++++..++.
T Consensus       413 ~~~~~~~i~~~~~~i~~i~~  432 (451)
T PF00083_consen  413 GGWGVFLIFAGVCLIAIIFV  432 (451)
T ss_pred             cccccchhhHHHHHHHHhhe
Confidence            63445666555554544443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=97.98  E-value=7.2e-05  Score=73.14  Aligned_cols=145  Identities=8%  Similarity=-0.153  Sum_probs=106.6

Q ss_pred             HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCC
Q 045564           79 IQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKA  158 (296)
Q Consensus        79 ~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~  158 (296)
                      .+.+|.++.+.+.+.....++..++..+.+.+.+| +|.|+++.++.++..++.+...+...-....          ...
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~----------~gi  348 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLA----------FGI  348 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccc----------cCC
Confidence            35689999999999999999999999999999999 7999999999998887664432111000000          000


Q ss_pred             CCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccc-----chhh
Q 045564          159 PSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLS-----WRLG  233 (296)
Q Consensus       159 ~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~g-----w~~~  233 (296)
                      +   .....+...++.+++.+........++.+..|+ +.+++.++++....|+|..+++.+++++.+..|     ++..
T Consensus       349 ~---~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~  424 (468)
T TIGR00788       349 S---DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPS-GCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNL  424 (468)
T ss_pred             C---CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCC-CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccch
Confidence            0   112333445677778887778889999999984 478999999999999999999999999988776     5544


Q ss_pred             HHHHH
Q 045564          234 SGLNI  238 (296)
Q Consensus       234 F~i~~  238 (296)
                      +.+-.
T Consensus       425 ~~~i~  429 (468)
T TIGR00788       425 WLLIL  429 (468)
T ss_pred             HHHHH
Confidence            44333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.97  E-value=0.0013  Score=63.13  Aligned_cols=100  Identities=15%  Similarity=0.131  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccC
Q 045564           71 VANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCD  150 (296)
Q Consensus        71 ~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~  150 (296)
                      ..+++.|+++ .|+|..|.+.+.++..+...+++++.|+++||...+||.+.+..++..+.........           
T Consensus        22 ~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~-----------   89 (400)
T PF03825_consen   22 LPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS-----------   89 (400)
T ss_pred             HHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence            4677888865 6799999999999999999999999999999954467777776666555332222111           


Q ss_pred             CCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCC
Q 045564          151 IGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFE  194 (296)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~  194 (296)
                                  +.+.+++..++..+......|...++.-+...
T Consensus        90 ------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~  121 (400)
T PF03825_consen   90 ------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG  121 (400)
T ss_pred             ------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence                        23344555556666666666666665555443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.90  E-value=0.00028  Score=68.96  Aligned_cols=151  Identities=16%  Similarity=0.092  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHhCCChhHH-HHHHH----HHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCC
Q 045564           70 WVANLMVYMIQEFHITSINS-ALISN----IVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a-~~i~~----~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~  144 (296)
                      ...+...+.....+.+.... .....    .......+..++-|.++|| +|||..+.+..+...+..+.+.+..     
T Consensus        40 ~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~~~~~l~~~~~~~~~-----  113 (463)
T KOG2816|consen   40 VMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDR-YGRKVVLLLPLFGTILPALCLLFQG-----  113 (463)
T ss_pred             chhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhh-hhhhhhHHHHHHHHHHhHHHHHHHH-----
Confidence            44555556655555443322 22222    2356778888899999999 6999999998887766544443321     


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHH--hhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACL--GLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFV  222 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gi--g~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~  222 (296)
                                         .+.++    +.++  +.+...+...++++|...++ .|...+++.+-+...+..++|..++
T Consensus       114 -------------------~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~-~R~~~~gll~~~~~~~~~~~p~~~~  169 (463)
T KOG2816|consen  114 -------------------YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE-ERSSSIGLLSGTFGAGLVIGPALGG  169 (463)
T ss_pred             -------------------HHHhh----hcccccchhhhhhhhhhheeeccchh-HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence                               11111    3332  34456677888899988744 7888999888778888999999999


Q ss_pred             hhhccccchhhHHHHHHHHHHHHHHHHh
Q 045564          223 YIEDNLSWRLGSGLNIAANLAGVVIFLS  250 (296)
Q Consensus       223 ~l~~~~gw~~~F~i~~~~~~~~~~~~~~  250 (296)
                      ++.+..|.-..|.++.+..+++.+..+.
T Consensus       170 ~~~~~~~~a~~f~ia~~~~~~~~~y~~~  197 (463)
T KOG2816|consen  170 YLVKFLGIALVFLIAAASGILSLLYMLL  197 (463)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999987777765443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.89  E-value=2e-05  Score=75.79  Aligned_cols=180  Identities=17%  Similarity=0.097  Sum_probs=112.8

Q ss_pred             hhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHH--------HHHHHHHHHHH-HHHHHHHHhhhhcchHHHH
Q 045564           54 TALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSAL--------ISNIVNGFVNL-FPVLGAIIADSFLGSFQVI  121 (296)
Q Consensus        54 ~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~--------i~~~~~~~~~~-~~l~~G~laDr~iGR~~~i  121 (296)
                      |.++...+..+  - ++|+...+...-+. ..|..+.+...        ...+......+ +..++.++.|+ +|||+..
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHHH
Confidence            44444444444  4 78877666655554 34443322211        12222222222 45566777999 8999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhh
Q 045564          122 WISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGI  201 (296)
Q Consensus       122 ~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~  201 (296)
                      +-+.+++.+..+.++.+-   .          +.   .+......++..  ..-++.-+..+.....-+|.||.| .|+.
T Consensus       382 ~~GF~~~~i~~~~~~~~y---~----------~~---~~~~Gf~v~y~l--~~ff~NFGPn~ttfivpaE~FPar-vR~t  442 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGPY---N----------QL---ENTIGFVVLYSL--TFFFGNFGPNATTFIVPAEIFPAR-VRST  442 (538)
T ss_pred             HhhHHHHHHHHHHHcCCc---c----------cc---cccCceeehHHH--HHHHHhcCCCceeEEeehhhchHH-Hhhh
Confidence            999998887666555431   1          00   011111222221  122333345556666678999966 7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhc-----cccchhhHHHHHHHHHHHHHHHHhCCCc
Q 045564          202 FFNWFFILTYASTVISSAAFVYIED-----NLSWRLGSGLNIAANLAGVVIFLSGKHF  254 (296)
Q Consensus       202 ~f~~~y~~~~iG~~i~p~v~~~l~~-----~~gw~~~F~i~~~~~~~~~~~~~~~~~~  254 (296)
                      ..++...+.-+|++++...-.++++     ..|.++.|++.+.++.++.++.+...++
T Consensus       443 ~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEt  500 (538)
T KOG0252|consen  443 CHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPET  500 (538)
T ss_pred             hhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecc
Confidence            9999888888999999999999998     7789999999999998888764443343

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.86  E-value=0.00055  Score=65.25  Aligned_cols=142  Identities=15%  Similarity=0.127  Sum_probs=94.5

Q ss_pred             HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----hHHH-HHHHHHHHHHHHHHHHhhccccCCCCCccCC
Q 045564           78 MIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLG-----SFQV-IWISSFISLLGTILLDSTATFDSLRPQRCDI  151 (296)
Q Consensus        78 l~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iG-----R~~~-i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~  151 (296)
                      +..|++++..-.+.++.+-..... .-+..|+.||+ -+     ||.- +..|.++...|..+...+..  .+..    .
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~-~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~--~l~~----~   77 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDT-HPSILGWRRTPYIWGGTLLQAGGLAIAPFALL--LLAE----S   77 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhcccccc-CcccCcCCchhhhHHHHHHHHHHHHHHHHHHH--HHcc----c
Confidence            456888888888877777765544 57778999999 46     5544 44555666665555554431  1100    0


Q ss_pred             CCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 045564          152 GLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLS  229 (296)
Q Consensus       152 ~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~g  229 (296)
                      .... +.+...........-.+.|+|.+....+..++.+|..|++ +|.+..++.|...-+|.+++..+.+.+.+.++
T Consensus        78 ~~~~-~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~-~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s  153 (403)
T PF03209_consen   78 GQQS-SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEE-RRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS  153 (403)
T ss_pred             cccc-ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            0000 1111112223334455678888888899999999999954 78999999888888999999999998887665

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.81  E-value=0.00018  Score=52.78  Aligned_cols=56  Identities=23%  Similarity=0.317  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFI  127 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l  127 (296)
                      ...+++.|+. +.|++..+.+.+.++......+++++.|+++|| +||+|.+.....+
T Consensus        19 ~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~   74 (77)
T PF12832_consen   19 LYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLF   74 (77)
T ss_pred             HHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHH
Confidence            4567777876 589999999999999999999999999999999 6988877765543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.77  E-value=0.0016  Score=64.28  Aligned_cols=122  Identities=9%  Similarity=-0.039  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRC  149 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c  149 (296)
                      +..+.+.. -+..|.+... .....+..+...++..++.++.|| +|||+.++.+.+...++.++++.........    
T Consensus       314 ~~~Y~~~i-f~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~-~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~----  386 (513)
T KOG0254|consen  314 VFYYSTTI-FKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR-FGRRKLLLFGAAGMSICLVILAVVGVFALYY----  386 (513)
T ss_pred             EEeehHHH-HHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHhHHHHHHHHHHHHHHHHHhccC----
Confidence            33344444 3455655433 555666667777888888999999 7999999999999999998887653111000    


Q ss_pred             CCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHH
Q 045564          150 DIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNW  205 (296)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~  205 (296)
                          ..+..  ......+....+.......+..+....+.+|.||.+ .|..+.++
T Consensus       387 ----~~~~~--~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~-~r~~~~s~  435 (513)
T KOG0254|consen  387 ----PNSSK--GAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLR-LRSKGASL  435 (513)
T ss_pred             ----CCccc--chhHHHHHHHHHHHHHHhcccccchhhhhhccCcHh-HHhhhHHH
Confidence                00000  011111111122222222233444556889999954 67777665

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.76  E-value=0.0027  Score=62.37  Aligned_cols=202  Identities=9%  Similarity=-0.116  Sum_probs=128.8

Q ss_pred             ccCCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHH-hCCCh------hH----HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045564           49 KRGGRTALLSRTVTCL--T-LGEGWVANLMVYMIQE-FHITS------IN----SALISNIVNGFVNLFPVLGAIIADSF  114 (296)
Q Consensus        49 ~~~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~-lg~s~------~~----a~~i~~~~~~~~~~~~l~~G~laDr~  114 (296)
                      .+.-||.+..++.+.+  - +.+....+...|+.++ +|-++      .+    ..+...++.+...+.+++--++.++ 
T Consensus       253 ~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~-  331 (477)
T TIGR01301       253 FKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG-  331 (477)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            5567888888888888  3 6776677777777643 44322      11    2234445555556666677888999 


Q ss_pred             cch-HHHHHHHHHHHHHHHHHHHhhccccC-CCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhcc
Q 045564          115 LGS-FQVIWISSFISLLGTILLDSTATFDS-LRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQ  192 (296)
Q Consensus       115 iGR-~~~i~i~~~l~~ig~~~la~~~~~p~-~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~  192 (296)
                      +|+ |++..++.++..+|++...+....+. ...   .+.+...-.++.......++...+.|+..+.....-++++++.
T Consensus       332 ~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~  408 (477)
T TIGR01301       332 WGAGKRLWGIVNIILAICLAATVLVTYVAKNSRY---YDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIR  408 (477)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhhhhcccc---ccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Confidence            785 67778888888888777654321110 000   0000000011111134555666788899998888889999998


Q ss_pred             CCC-ccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccc--chhhHHHHHHHHHHHHHHHHhCCCc
Q 045564          193 FEI-PQHQGIFFNWFFILTYASTVISSAAFVYIEDNLS--WRLGSGLNIAANLAGVVIFLSGKHF  254 (296)
Q Consensus       193 f~~-~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~g--w~~~F~i~~~~~~~~~~~~~~~~~~  254 (296)
                      .++ +++.|...+++++++.+.-.+..+..|.+.+-.|  -.+.+.+.++.++++.+..+...||
T Consensus       409 ~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       409 SSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             ccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            873 2356888999999999998888877777554443  4567888888777776665554443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PTZ00207 hypothetical protein; Provisional

Probab=97.72  E-value=0.00061  Score=68.53  Aligned_cols=181  Identities=9%  Similarity=0.062  Sum_probs=119.8

Q ss_pred             HHHHHHHHH--H-hHHHhHHHHHHHHHHHh-CCChhH--HHHHHHHHHHHHHHHHHHHHHHhhhhcchHH---------H
Q 045564           56 LLSRTVTCL--T-LGEGWVANLMVYMIQEF-HITSIN--SALISNIVNGFVNLFPVLGAIIADSFLGSFQ---------V  120 (296)
Q Consensus        56 ~~~l~~~~~--~-~~y~~~~~l~~yl~~~l-g~s~~~--a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~---------~  120 (296)
                      +|.++...+  . +...+..|+- .+.+.+ |.+..+  ....++++.+.+++|-+.+|+++ .++-||+         .
T Consensus       355 ~Wll~~~~~cg~g~gl~~~~N~~-qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~  432 (591)
T PTZ00207        355 LWCLLWSIFCCVGAHFVIIFNAR-FIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIA  432 (591)
T ss_pred             HHHHHHHHHHhhCchheeeecHH-HHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHH
Confidence            355555555  2 3333444544 444667 763322  22378999999999999999998 3233333         2


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchh
Q 045564          121 IWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQG  200 (296)
Q Consensus       121 i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~  200 (296)
                      +.+..+ ..++++++++.  .|.                     ..++++-++.|++.|...+...+...|+|. + .-+
T Consensus       433 l~~~~~-~~~~~lll~~~--~p~---------------------~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k-~~g  486 (591)
T PTZ00207        433 LFIPSV-CIITMLTLFLT--LPK---------------------AALPLPYFIAAFANGFMAATIALVTRTIFA-K-DPA  486 (591)
T ss_pred             HHHHHH-HHHHHHHHHHH--CCc---------------------cHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-c-chH
Confidence            334444 66666666654  221                     368888999999999999999999999998 3 578


Q ss_pred             hHHHHHHHHHHHHHHHH-HHHHHhhhcc----------cc---chhhHHHHHHHHHHHHHHHHhC----CCchhHHHHHH
Q 045564          201 IFFNWFFILTYASTVIS-SAAFVYIEDN----------LS---WRLGSGLNIAANLAGVVIFLSG----KHFYFPVIVAS  262 (296)
Q Consensus       201 ~~f~~~y~~~~iG~~i~-p~v~~~l~~~----------~g---w~~~F~i~~~~~~~~~~~~~~~----~~~~~~v~~~~  262 (296)
                      ..||..+.+.-+|+.+= ..+.|.+.|.          .|   ++.+|.+.+.+.++++++-+..    +|.|++++  +
T Consensus       487 ~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~y~~~~--~  564 (591)
T PTZ00207        487 KHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRLCLKAL--E  564 (591)
T ss_pred             HHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHHHHHHH--H
Confidence            99999888888887764 4667766542          12   6788888888777776654333    33444665  4


Q ss_pred             HhcC
Q 045564          263 VKKW  266 (296)
Q Consensus       263 ~~~~  266 (296)
                      .|+|
T Consensus       565 ~~~~  568 (591)
T PTZ00207        565 ERRR  568 (591)
T ss_pred             HHHH
Confidence            4443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.70  E-value=3.3e-06  Score=76.78  Aligned_cols=137  Identities=12%  Similarity=0.144  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccC
Q 045564           71 VANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCD  150 (296)
Q Consensus        71 ~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~  150 (296)
                      -.-+.++.+...++..++..++-+++..-..+.+.++||+.||.+|-|..-++-+++..+|.++.+.-...         
T Consensus        63 p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~---------  133 (459)
T KOG4686|consen   63 PGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGIS---------  133 (459)
T ss_pred             chhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHH---------
Confidence            34456677767777777888888999999999999999999999998877667677777888887654311         


Q ss_pred             CCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 045564          151 IGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNL  228 (296)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~  228 (296)
                                 ..+++...+|++.|+|.-......+.+....|..+ +..-.|++.....-+|...-..+.+++.+..
T Consensus       134 -----------~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGK-ELn~vfGlqlSvAR~GstvNf~lm~~ly~~~  199 (459)
T KOG4686|consen  134 -----------HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGK-ELNFVFGLQLSVARLGSTVNFLLMPFLYDTM  199 (459)
T ss_pred             -----------HHHHHHHhhheeeccCchhhhhhhcceeEEEecCc-cccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence                       24678899999999998877778888888888743 5778888866666777766556666666543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.57  E-value=0.00037  Score=68.43  Aligned_cols=158  Identities=9%  Similarity=0.009  Sum_probs=113.3

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCcc
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRC  149 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c  149 (296)
                      +.+++--++ ++++-.+...+.+...-.++-++.-++.+++-.+ +|+-+++.+++....+=++.++..           
T Consensus       390 v~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L-----------  456 (618)
T KOG3762|consen  390 VFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYL-----------  456 (618)
T ss_pred             HHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHh-----------
Confidence            334443344 4555555555555555566667777888999999 799999999888776655444332           


Q ss_pred             CCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHH-HHHHHHHHHHHHHHHhhhccc
Q 045564          150 DIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFF-ILTYASTVISSAAFVYIEDNL  228 (296)
Q Consensus       150 ~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y-~~~~iG~~i~p~v~~~l~~~~  228 (296)
                                  .+.|..+..-++.|+-.+.++.++.+++++..|++ .|.++-+++. .--.+|-.+|.+++|.+.+.+
T Consensus       457 ------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~-l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f  523 (618)
T KOG3762|consen  457 ------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPG-LRATAQGLLQGIFHGLGKGLGSLIGGFVVERF  523 (618)
T ss_pred             ------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCc-chHHHHHHHHHHhcccCcchhhhhhhhhheee
Confidence                        23466777788999999999999999999999943 5666666532 223467778889999999989


Q ss_pred             cchhhHHHHHHHHHHHHHHHHhCCC
Q 045564          229 SWRLGSGLNIAANLAGVVIFLSGKH  253 (296)
Q Consensus       229 gw~~~F~i~~~~~~~~~~~~~~~~~  253 (296)
                      |-+..|.+..+.+++.++.+....+
T Consensus       524 g~~ttf~~~giAcl~~l~~~~~iq~  548 (618)
T KOG3762|consen  524 GARTTFRIFGIACLVTLALFISIQL  548 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9899999988877777766654444

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.55  E-value=0.0063  Score=61.26  Aligned_cols=86  Identities=10%  Similarity=-0.060  Sum_probs=59.5

Q ss_pred             CCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHH-HHHH
Q 045564           51 GGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSI---NSALISNIVNGFVNLFPVLGAIIADSFLGSFQ-VIWI  123 (296)
Q Consensus        51 ~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~---~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~-~i~i  123 (296)
                      ..+|.+...+.+.+  . .+|.+..+.|....+.++.+..   ..++....+..+..++.++.|.+.-+ ++|.| .+++
T Consensus       307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~-ir~~Kw~li~  385 (599)
T PF06609_consen  307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSK-IRHIKWQLIF  385 (599)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH-ccchhHHHHH
Confidence            34566666555555  5 7777777777777776766653   45677777888888888899999988 78855 4456


Q ss_pred             HHHHHHHHHHHHHh
Q 045564          124 SSFISLLGTILLDS  137 (296)
Q Consensus       124 ~~~l~~ig~~~la~  137 (296)
                      +.++.+++..+++.
T Consensus       386 ~~~~~ta~~Gama~  399 (599)
T PF06609_consen  386 GSVLMTAFCGAMAA  399 (599)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777666555553

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.53  E-value=0.0076  Score=50.35  Aligned_cols=111  Identities=14%  Similarity=0.070  Sum_probs=79.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhH
Q 045564           86 SINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFA  165 (296)
Q Consensus        86 ~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~  165 (296)
                      ........++..+...+..+++..+-++ +|.|++++++.+.+.+-.+...    .|                    +..
T Consensus        36 ~~~G~~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~----~~--------------------~~~   90 (156)
T PF05978_consen   36 AGLGYYSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFF----YP--------------------NSY   90 (156)
T ss_pred             ccccHHHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH----hh--------------------hHH
Confidence            3334445566666777788888889999 8999999999998876333211    22                    246


Q ss_pred             HHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 045564          166 VLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFV  222 (296)
Q Consensus       166 ~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~  222 (296)
                      .++.+-++.|++.+..+.....++.+..+ ++.+++..+++....+.+.++|.++.-
T Consensus        91 ~l~~~s~l~G~~~a~lW~aqg~ylt~~s~-~~~~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen   91 TLYPASALLGFGAALLWTAQGTYLTSYST-EETIGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHHHHHHHHhhhhHHhhHhhhHHHHHcCC-HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            78888899999999999999999998665 456777777755555566666655443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.41  E-value=0.0045  Score=62.98  Aligned_cols=69  Identities=19%  Similarity=0.309  Sum_probs=57.0

Q ss_pred             H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhhcc--hHHHHHHHHHHHHHHHHH
Q 045564           65 T-LGEGWVANLMVYMIQEFHITSINSALISNIVNG-FVNLFPVLGAIIADSFLG--SFQVIWISSFISLLGTIL  134 (296)
Q Consensus        65 ~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~-~~~~~~l~~G~laDr~iG--R~~~i~i~~~l~~ig~~~  134 (296)
                      . .+++..++++.|+++.+|++..+++.+.....+ +..++.+++|+++|| ++  .|+.+.++.++.+++.+.
T Consensus       343 ~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r-~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       343 SLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKK-FKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeee-ecccHHHHHHHHHHHHHHHHHH
Confidence            5 788888999999999999999999988877665 568899999999999 67  467777777766666544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR01272 gluP glucose/galactose transporter

Probab=97.32  E-value=0.0013  Score=60.69  Aligned_cols=78  Identities=9%  Similarity=-0.098  Sum_probs=65.4

Q ss_pred             hhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc---------------
Q 045564          163 QFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDN---------------  227 (296)
Q Consensus       163 ~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~---------------  227 (296)
                      +...++++.++.|.|.+...+..+++++++.+++ .+.+..|+......+|..++|++++.+...               
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~-~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~   87 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIE-TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE   87 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc-hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence            5678999999999999999999999999999844 577888888888999999999999877632               


Q ss_pred             -ccchhhHHHHHHHH
Q 045564          228 -LSWRLGSGLNIAAN  241 (296)
Q Consensus       228 -~gw~~~F~i~~~~~  241 (296)
                       .+|+++|++.+++.
T Consensus        88 ~~~~~~~yl~ia~~~  102 (310)
T TIGR01272        88 AAKVHTPYLLLAGAL  102 (310)
T ss_pred             HHHHHHHHHHHHHHH
Confidence             36899998655543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.17  E-value=0.075  Score=52.31  Aligned_cols=131  Identities=14%  Similarity=0.054  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHH-HHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHH
Q 045564           90 ALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWI-SSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLY  168 (296)
Q Consensus        90 ~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i-~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~  168 (296)
                      +...++..+...+..|+-|-++|+ -|+||.++. ..++..+....+.+..  |                   .+.....
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~-~~~Rk~~l~~~~~~~~~~~~~l~~v~--~-------------------~~~~~~~  130 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADY-GGRRKRFLLIFTLLGVLATALLWFVS--P-------------------GQWWLAL  130 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcc-cccchHHHHHHHHHHHHHHHHHHHhC--c-------------------chHHHHH
Confidence            456788888999999999999999 576665544 4444444444433321  1                   1222222


Q ss_pred             HHHHHHHHhhchhhhhhhhhhhccCCCccc-------------------------hhhHHHHHHHHHHHHHHHHHHHHHh
Q 045564          169 SGIALACLGLGGLRFTLATMGANQFEIPQH-------------------------QGIFFNWFFILTYASTVISSAAFVY  223 (296)
Q Consensus       169 ~~~~l~gig~g~~~~~~~~~~ad~f~~~~~-------------------------r~~~f~~~y~~~~iG~~i~p~v~~~  223 (296)
                      +..++..++.+.......+++.|+-+++.+                         |++.-++-+...++|+++.-.+.-.
T Consensus       131 ~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~  210 (477)
T PF11700_consen  131 VLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLL  210 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence            223344466677777788888888874322                         1444444345567777776554433


Q ss_pred             hhcc--------ccchhhHHHHHHHHH
Q 045564          224 IEDN--------LSWRLGSGLNIAANL  242 (296)
Q Consensus       224 l~~~--------~gw~~~F~i~~~~~~  242 (296)
                      +...        .+-|..+.+.++..+
T Consensus       211 ~~~~~~~~~~~~~~~r~~~~~~a~ww~  237 (477)
T PF11700_consen  211 LVISPGSTASNTWAIRVAFLIVALWWL  237 (477)
T ss_pred             HHHcCCCccccchhhhHHHHHHHHHHH
Confidence            3211        234677777666433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.08  E-value=0.0012  Score=63.77  Aligned_cols=163  Identities=16%  Similarity=0.073  Sum_probs=102.3

Q ss_pred             hHHHHHHHHH-H-hHHHh-HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh---cchHHHHHH-HHHH
Q 045564           55 ALLSRTVTCL-T-LGEGW-VANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSF---LGSFQVIWI-SSFI  127 (296)
Q Consensus        55 ~~~~l~~~~~-~-~~y~~-~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~---iGR~~~i~i-~~~l  127 (296)
                      .++.+..+.+ . ..+.. .+++++|+ +.+|++..-.+.+-.+.-+...+.+++.|..+||+   +||||-++. +.+.
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl-~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~  111 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYL-QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL  111 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHH-HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence            3444444444 3 33333 45666776 57899988887777777788889999999999985   688776554 4455


Q ss_pred             HHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHH
Q 045564          128 SLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFF  207 (296)
Q Consensus       128 ~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y  207 (296)
                      .+++.+++..++-+-.+   -|++-   ...........++++..+.=+..-..+...-++.+|+...+.++.++.+++.
T Consensus       112 i~~~l~Lig~aaDig~~---lgd~~---~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~  185 (498)
T KOG0637|consen  112 IAVSLFLIGYAADIGLL---LGDNE---RKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFS  185 (498)
T ss_pred             HHHHHhhhhhHhhhhHH---hcCCc---ccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHH
Confidence            55655554443211000   01110   0001112345566666666677777888899999999973333333777777


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 045564          208 ILTYASTVISSAAFVYI  224 (296)
Q Consensus       208 ~~~~iG~~i~p~v~~~l  224 (296)
                      +.+.+|+.+|...++|.
T Consensus       186 ~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  186 FFMAVGNVLGYALGSYL  202 (498)
T ss_pred             HHHHhcceeeeeccccc
Confidence            88889998888777654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.01  E-value=0.062  Score=52.89  Aligned_cols=106  Identities=8%  Similarity=-0.002  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhh
Q 045564           99 FVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGL  178 (296)
Q Consensus        99 ~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~  178 (296)
                      .........+..-|+ +|||.....+.++..++.++.....   ..                 .......+...+...+.
T Consensus       362 ~~~p~~~~~~~~~~~-~gR~~~~~~~~~~~~~~~~~~~~~~---~~-----------------~~~~~~~~~~~~~~~~~  420 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPE-FGRRPPLFLSLFLAGIGLLLFGWLP---DD-----------------LGGWLHWILPLLGKFFI  420 (521)
T ss_pred             HHhhHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHhh---cc-----------------chhHHHHHHHHHHHHHH
Confidence            444455556889999 7999999999999998888776653   10                 01012222222333344


Q ss_pred             chhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045564          179 GGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIED  226 (296)
Q Consensus       179 g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~  226 (296)
                      +........+.+|++|+. .|..+.+.......+|++++|.+......
T Consensus       421 ~~~~~~~~~~~~el~pt~-~r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  421 GSAFNLIFLYSAELIPTV-VRNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            444455688899999954 78899998888889999999987655544

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.87  E-value=0.086  Score=50.76  Aligned_cols=151  Identities=13%  Similarity=-0.007  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHH-hCCChhHHHH-HHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCc
Q 045564           71 VANLMVYMIQE-FHITSINSAL-ISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQR  148 (296)
Q Consensus        71 ~~~l~~yl~~~-lg~s~~~a~~-i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~  148 (296)
                      -.++..|+++. .|++..+... +.-++.=......++...+.|. +|-|++++++.+...+..+++....         
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~---------   92 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT---------   92 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC---------
Confidence            46677899887 8998888653 4445555556667777999999 7999999999988777666554432         


Q ss_pred             cCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCC-ccchhhHHHHHHHHHHHHHHHHHHHHHhhhc-
Q 045564          149 CDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEI-PQHQGIFFNWFFILTYASTVISSAAFVYIED-  226 (296)
Q Consensus       149 c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~-~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~-  226 (296)
                                    +...+-+..++.|++.+. ...-++++--..|+ +-+|.+.+  .-.+.-+|-.++.+++..+.. 
T Consensus        93 --------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~--~raa~l~g~~~s~~lgQllvs~  155 (412)
T PF01770_consen   93 --------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSY--TRAATLVGRFISSLLGQLLVSF  155 (412)
T ss_pred             --------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence                          234455556666666554 33344444444442 22333333  334444555555555554443 


Q ss_pred             -cccchhhHHHHHHHHHHHHHHH
Q 045564          227 -NLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       227 -~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                       ..++...+.+......+++++-
T Consensus       156 ~~~sy~~L~~isl~~~~~a~~~~  178 (412)
T PF01770_consen  156 GGVSYFQLNYISLASVSLALLIA  178 (412)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHH
Confidence             3456667777777666666553

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=96.82  E-value=0.17  Score=50.42  Aligned_cols=156  Identities=15%  Similarity=0.053  Sum_probs=82.1

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHH-hhccccCCCCCccCCCCc
Q 045564           76 VYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLD-STATFDSLRPQRCDIGLS  154 (296)
Q Consensus        76 ~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la-~~~~~p~~~~~~c~~~~~  154 (296)
                      ..+...+|-+....+.+++++.++..+|..++|+++++ .-|+.. .+-..+..++.+... +....+..          
T Consensus        39 r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~----------  106 (521)
T PRK03612         39 TLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAGFV-AVELLLALLGGLSALILYAAFAFQ----------  106 (521)
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            34555678888888999999999999999988888755 223222 111111111111100 00000100          


Q ss_pred             CcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhc-cccch-h
Q 045564          155 LCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIED-NLSWR-L  232 (296)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~-~~gw~-~  232 (296)
                            ......++...++.++..|+..|....+..+...  ..-++..+..|....+|+++|.++.+++.- ..|-. .
T Consensus       107 ------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~--~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t  178 (521)
T PRK03612        107 ------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD--QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRT  178 (521)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHH
Confidence                  0011122233345566666666655554443221  113445666778888999999988887754 45643 3


Q ss_pred             hHHHHHHHHHHHHHHHHhC
Q 045564          233 GSGLNIAANLAGVVIFLSG  251 (296)
Q Consensus       233 ~F~i~~~~~~~~~~~~~~~  251 (296)
                      .+.+..+-.+++++.++..
T Consensus       179 ~~~~a~l~~~~a~~~~~~~  197 (521)
T PRK03612        179 AALTGSLNLLAALVFLWLF  197 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444443333

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=96.78  E-value=0.13  Score=50.77  Aligned_cols=142  Identities=11%  Similarity=0.038  Sum_probs=91.3

Q ss_pred             hHHHhHHHHHHHHHHHh-----CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchH-H------HHHHHHHHHHHHHH
Q 045564           66 LGEGWVANLMVYMIQEF-----HITSINSALISNIVNGFVNLFPVLGAIIADSFLGSF-Q------VIWISSFISLLGTI  133 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~l-----g~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~-~------~i~i~~~l~~ig~~  133 (296)
                      .|.-..+.+..|..+..     |++ -.+.+..++..+...+..|+.+++=.| .+|| |      -+.+|.++..+|.+
T Consensus       283 ~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~-l~~~~~~~s~~~Kfa~g~~~~g~~f~  360 (493)
T PRK15462        283 FAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKE-SVAGNRTVRIWGKFALGLGLMSAGFC  360 (493)
T ss_pred             HHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHH-HhcCCCCCCcHHHHHHHHHHHHHHHH
Confidence            44444455555665542     221 234566777777777777777777555 4322 1      37888888889988


Q ss_pred             HHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHH-HH
Q 045564          134 LLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILT-YA  212 (296)
Q Consensus       134 ~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~-~i  212 (296)
                      ++.++.....              ++...+...+++..++.++|.-...|...++++++.|+ +.++..++.+++.. .+
T Consensus       361 ~l~~~~~~~~--------------~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~-~~~g~~mg~w~l~~~~~  425 (493)
T PRK15462        361 ILTLSARWSA--------------MYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIP-GVTGVLTGIYMLLSGAI  425 (493)
T ss_pred             HHHHHHhhcC--------------CCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChH-HHHHHHHHHHHHHHHHH
Confidence            8877642110              00012334466777889999999999999999999994 47888888876633 46


Q ss_pred             HHHHHHHHHHhh
Q 045564          213 STVISSAAFVYI  224 (296)
Q Consensus       213 G~~i~p~v~~~l  224 (296)
                      |..++..+.+..
T Consensus       426 ~~~~~g~~~~~~  437 (493)
T PRK15462        426 ANYLAGVIADQT  437 (493)
T ss_pred             HHHHHHHHHHHh
Confidence            666655555544

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.67  E-value=0.027  Score=54.55  Aligned_cols=158  Identities=13%  Similarity=0.100  Sum_probs=93.1

Q ss_pred             HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcch-HHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCC
Q 045564           81 EFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGS-FQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAP  159 (296)
Q Consensus        81 ~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR-~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~  159 (296)
                      .-|++...++.+.....+++.++.++.|.++|| ... |+++++......++.+.+......+.                
T Consensus       295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dk-tk~fk~~~~v~~~~~~v~~~~l~~~t~~~~----------------  357 (480)
T KOG2563|consen  295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADK-TKKFKLTTLVLYLFALVGTLMLLTCTLFLG----------------  357 (480)
T ss_pred             cccCCccccchhHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHhhccCC----------------
Confidence            346777889999999999999999999999999 455 44555555555555322222221111                


Q ss_pred             CchhhHHHHHHHHHHHHhhchhhhhhhhhhhcc-CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccc---chhhHH
Q 045564          160 SKVQFAVLYSGIALACLGLGGLRFTLATMGANQ-FEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLS---WRLGSG  235 (296)
Q Consensus       160 ~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~-f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~g---w~~~F~  235 (296)
                         ....++....+.|....+..|.-.-+..|. ||..+.-.  .++..+..++-+.+=.++.+...+..+   |.++.-
T Consensus       358 ---~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tS--sGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~  432 (480)
T KOG2563|consen  358 ---DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTS--SGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPAN  432 (480)
T ss_pred             ---ceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCccc--ceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccch
Confidence               123455555566666666666666665554 45332222  233344445555555566666666554   444434


Q ss_pred             HHH-HHHHHHHHHHHhCCCchhHHHH
Q 045564          236 LNI-AANLAGVVIFLSGKHFYFPVIV  260 (296)
Q Consensus       236 i~~-~~~~~~~~~~~~~~~~~~~v~~  260 (296)
                      +.. ....++.++..+.+|.|+|.-.
T Consensus       433 i~~~~~~~l~~~lva~~r~~y~R~~~  458 (480)
T KOG2563|consen  433 IFLTVSALLGAILVAFFRPDYRRLRA  458 (480)
T ss_pred             hHhHHHHHHHHHHHhhhhhhHHhHhh
Confidence            433 3445556666778888876543

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.63  E-value=0.02  Score=42.82  Aligned_cols=66  Identities=9%  Similarity=0.044  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhh
Q 045564           72 ANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDST  138 (296)
Q Consensus        72 ~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~  138 (296)
                      +.+.+.+.++.++|.++++++.+...+++.+|.+...++.++ ..+++.+..+.++..+..+.++++
T Consensus        12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            456678899999999999999999999999999999999999 688888999888888877766654

Note that many members are hypothetical proteins.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.49  E-value=0.037  Score=52.66  Aligned_cols=132  Identities=14%  Similarity=0.183  Sum_probs=95.2

Q ss_pred             HHHHHHHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHH-HHHHHHhhccccCCCCCc
Q 045564           71 VANLMVYM-IQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLL-GTILLDSTATFDSLRPQR  148 (296)
Q Consensus        71 ~~~l~~yl-~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~i-g~~~la~~~~~p~~~~~~  148 (296)
                      ..+...++ .+.+|+++.|.+.+.+.-.....+.++.-++..||..|.-+....-.++.++ ..+++....         
T Consensus       280 ~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~---------  350 (451)
T KOG2615|consen  280 LENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLAR---------  350 (451)
T ss_pred             HHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccc---------
Confidence            34444444 5679999999998888888888888888888899965544433333322222 222222111         


Q ss_pred             cCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045564          149 CDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIED  226 (296)
Q Consensus       149 c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~  226 (296)
                                    ....++++..+..+..+...++...++....|.+ .|+...+++.....++=.+||++.|.+..
T Consensus       351 --------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~-qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  351 --------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQS-QRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             --------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcc-cchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence                          2256788888889999989999999999888844 79999999888889999999999988764

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.39  E-value=0.084  Score=50.79  Aligned_cols=125  Identities=18%  Similarity=0.117  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHhCC---ChhH----HHHHHHHHHHHHHHHHHHHHHHhhhhcch-HHHHHHHHHHHHHHHHHHHhhcccc
Q 045564           71 VANLMVYMIQEFHI---TSIN----SALISNIVNGFVNLFPVLGAIIADSFLGS-FQVIWISSFISLLGTILLDSTATFD  142 (296)
Q Consensus        71 ~~~l~~yl~~~lg~---s~~~----a~~i~~~~~~~~~~~~l~~G~laDr~iGR-~~~i~i~~~l~~ig~~~la~~~~~p  142 (296)
                      ....|.|+++..+-   +..+    .+...++..+...+..|+-|-++|. .|+ ||.+.+...+..+....+++..  |
T Consensus        35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i~--~  111 (438)
T COG2270          35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFIP--P  111 (438)
T ss_pred             eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHhC--C
Confidence            35677888877655   4333    3456778888889999999999999 585 5556666666666655555432  1


Q ss_pred             CCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCC-ccchhhHHHHHHHHHHHHHHHHH
Q 045564          143 SLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEI-PQHQGIFFNWFFILTYASTVISS  218 (296)
Q Consensus       143 ~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~-~~~r~~~f~~~y~~~~iG~~i~p  218 (296)
                                        +..+...++..++..++.........+++.|..++ +..|.+..+|  -..++|+.+.-
T Consensus       112 ------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~--~~gylgs~i~l  168 (438)
T COG2270         112 ------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGW--ALGYLGSVILL  168 (438)
T ss_pred             ------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCccccccc--ccccccchHHH
Confidence                              11234445556677788888888889999998873 3345555553  23455555433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.30  E-value=0.023  Score=55.72  Aligned_cols=127  Identities=17%  Similarity=0.172  Sum_probs=98.2

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCC
Q 045564           74 LMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGL  153 (296)
Q Consensus        74 l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~  153 (296)
                      +..|+...++++..+.+...+.......++.++...+--+.+|-|+++.+|.+.-.++..+.++..              
T Consensus       264 ~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~--------------  329 (463)
T KOG2816|consen  264 LLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT--------------  329 (463)
T ss_pred             EEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc--------------
Confidence            355778889999999999999999999999999884444448999999999999999888877663              


Q ss_pred             cCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 045564          154 SLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIE  225 (296)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~  225 (296)
                               +.+..+.+..+ ....+...|...++.+.+.+ +++++..+++....-.+.++++|.+-+.+.
T Consensus       330 ---------~~w~~~~~~v~-~~~~~~~~pa~~s~~s~~v~-~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  330 ---------ETWMMFAAGVV-VALAGIVFPAIRAFASILVS-PEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             ---------cchhhhHHHHH-HHhhcchhHHHHhHHHhhcc-cccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence                     12344444433 34455577888888888877 447899999999988999999998776663

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.02  E-value=0.0076  Score=54.89  Aligned_cols=149  Identities=16%  Similarity=0.091  Sum_probs=93.1

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCc
Q 045564           75 MVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLS  154 (296)
Q Consensus        75 ~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~  154 (296)
                      ..|+.+.+|..+.+.+.+.....+...++..+.|-++|+ .|||+.-+..++.++++.+    .-+-             
T Consensus        60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycitYiLsCi----TKhS-------------  121 (454)
T KOG4332|consen   60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCITYILSCI----TKHS-------------  121 (454)
T ss_pred             eeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHHHHHHHH----hhcC-------------
Confidence            447788889999998887777777788888899999999 7999987777776665332    3211             


Q ss_pred             CcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhh-hhccCCC----ccchhhHHHH-HHHHHHHHHHHHHHHHHhhhccc
Q 045564          155 LCKAPSKVQFAVLYSGIALACLGLGGLRFTLATM-GANQFEI----PQHQGIFFNW-FFILTYASTVISSAAFVYIEDNL  228 (296)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~-~ad~f~~----~~~r~~~f~~-~y~~~~iG~~i~p~v~~~l~~~~  228 (296)
                             .+.-+++++|++.|+......+.--+. ++|--.+    .+....-|+- ..+.+.+-++++.+.+..+++..
T Consensus       122 -------pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~  194 (454)
T KOG4332|consen  122 -------PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF  194 (454)
T ss_pred             -------CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence                   134578999999999988876655443 3333211    1111111221 11233344555666666666654


Q ss_pred             --cchhhHHHHHHHHHHHHHHH
Q 045564          229 --SWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       229 --gw~~~F~i~~~~~~~~~~~~  248 (296)
                        |=-.+|-..+...+++..+.
T Consensus       195 slGPVAPFdAAacfLaigmAvi  216 (454)
T KOG4332|consen  195 SLGPVAPFDAAACFLAIGMAVI  216 (454)
T ss_pred             ccCCCCchHHHHHHHHHHHHHH
Confidence              43456666665555555444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.53  E-value=2.3  Score=41.37  Aligned_cols=186  Identities=13%  Similarity=0.029  Sum_probs=90.0

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCC
Q 045564           74 LMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGL  153 (296)
Q Consensus        74 l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~  153 (296)
                      .+.|+.+-+.-+.--.+.....-.+...++.+.-|.+.|| .-|.|++..+.+.--+..++.+... +..+.. +     
T Consensus        25 ~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn~sv~~s~~~~-~~l~~~-~-----   96 (432)
T PF06963_consen   25 VPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQNLSVAASCALF-LLLLSY-P-----   96 (432)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHHHHHHHHHHHH-HHHHhC-C-----
Confidence            4445655544344444444444455666777777888999 6999998888766555444333221 111100 0     


Q ss_pred             cCcCCCCchhhHHHHHHHHH-HHHhhchhhhhhhhhhhccCC-----CccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 045564          154 SLCKAPSKVQFAVLYSGIAL-ACLGLGGLRFTLATMGANQFE-----IPQHQGIFFNWFFILTYASTVISSAAFVYIEDN  227 (296)
Q Consensus       154 ~~~~~~~~~~~~~l~~~~~l-~gig~g~~~~~~~~~~ad~f~-----~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~  227 (296)
                      .....+ ......+++...+ .++..=...+..-+.--|...     ++..+...-+..-=.=-+--++||++.|.+...
T Consensus        97 ~~~~~~-~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~  175 (432)
T PF06963_consen   97 SSSSQS-SWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTF  175 (432)
T ss_pred             cccccc-chHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            000000 1111122222111 111111111222222223322     111111111111100012466899999999887


Q ss_pred             ccchhhHHHHHHHHHHHHHH-HHhCCCchhHHHHHHHhcCCC
Q 045564          228 LSWRLGSGLNIAANLAGVVI-FLSGKHFYFPVIVASVKKWKP  268 (296)
Q Consensus       228 ~gw~~~F~i~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~  268 (296)
                      .|.+.+..+.++..++++++ ++...+-|.++-....|+++-
T Consensus       176 ~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~  217 (432)
T PF06963_consen  176 ASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSS  217 (432)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCc
Confidence            88888877777777777766 556667777666445555543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.51  E-value=1.4  Score=43.38  Aligned_cols=141  Identities=13%  Similarity=0.052  Sum_probs=77.8

Q ss_pred             HHHHhCCCh-----hHHHHHHHHHHHHHHHH-HHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC---CC-
Q 045564           78 MIQEFHITS-----INSALISNIVNGFVNLF-PVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR---PQ-  147 (296)
Q Consensus        78 l~~~lg~s~-----~~a~~i~~~~~~~~~~~-~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~---~~-  147 (296)
                      +.+.+.++.     ....++-+...+...+. .++-+++++| ++|++.+.+-...+..-.++.++.. .|.-.   +. 
T Consensus        29 lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~~~~~F~~~f~lF~~vl-~p~~~~~~p~~  106 (472)
T TIGR00769        29 TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYTVISPFLGFFALFAFVI-YPLSDLLHPTA  106 (472)
T ss_pred             hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHHHHHHHHHHHHHHHHHH-hcchhhcCCcH
Confidence            355666632     23344444443443333 7788999999 7999988887766665555544432 33210   00 


Q ss_pred             ccCCCCcCcCCCC---------chhhHHHHHHHHHHHHhhchhhh-hhhhhhhccCCCccchhhHHHHHHHHHHHHHHHH
Q 045564          148 RCDIGLSLCKAPS---------KVQFAVLYSGIALACLGLGGLRF-TLATMGANQFEIPQHQGIFFNWFFILTYASTVIS  217 (296)
Q Consensus       148 ~c~~~~~~~~~~~---------~~~~~~l~~~~~l~gig~g~~~~-~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~  217 (296)
                      -|++. ....++.         .+....+++   ...+-.....+ .-.++.+|.+..+ +-.+.|++++.+.|+|..++
T Consensus       107 ~~~~~-~~~~~~~~~~~i~~~~~W~~~~FYv---~~elw~~~vvS~lFW~fandi~t~~-qakRfy~l~~~ganlg~i~s  181 (472)
T TIGR00769       107 LADKL-LSLLPPGFMGFIAILRIWSFALFYV---MAELWGSVVLSLLFWGFANQITTID-EAKRFYALFGLGANVALIFS  181 (472)
T ss_pred             HHHHH-HhhcchhhHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHH
Confidence            00000 0000000         011112221   11222222222 5667889999843 56789999999999999999


Q ss_pred             HHHHHhhh
Q 045564          218 SAAFVYIE  225 (296)
Q Consensus       218 p~v~~~l~  225 (296)
                      +.+..++.
T Consensus       182 g~~~~~~~  189 (472)
T TIGR00769       182 GRTIKYFS  189 (472)
T ss_pred             HHHHHHHH
Confidence            99888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=95.45  E-value=0.068  Score=51.98  Aligned_cols=149  Identities=12%  Similarity=0.006  Sum_probs=80.6

Q ss_pred             HhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchH----HHHHHHHHHHHHHHHHHHhhcc-ccCCCCCccCCCCcC
Q 045564           81 EFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSF----QVIWISSFISLLGTILLDSTAT-FDSLRPQRCDIGLSL  155 (296)
Q Consensus        81 ~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~----~~i~i~~~l~~ig~~~la~~~~-~p~~~~~~c~~~~~~  155 (296)
                      -.|.+..+..+...+...++.+|.++||.++|+ +-|.    .+.....+....|....+..-. +|..           
T Consensus       277 ~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~-~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~-----------  344 (493)
T KOG1330|consen  277 LIGFDHNATLIFGGVTCAGGSLGVLFGGIISDK-LSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF-----------  344 (493)
T ss_pred             HhCCccccchhhhhHHHhhchhhheehHHHHHH-HHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh-----------
Confidence            345566677788889999999999999999999 3331    2333333333332222111100 1110           


Q ss_pred             cCCCCchhhHHHHHHHHHHHH-hhchhhhhhhhhhhccCCCccchhhHHHHHHHHHH-HHHHHHHHHHHhhhccc-cch-
Q 045564          156 CKAPSKVQFAVLYSGIALACL-GLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTY-ASTVISSAAFVYIEDNL-SWR-  231 (296)
Q Consensus       156 ~~~~~~~~~~~l~~~~~l~gi-g~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~-iG~~i~p~v~~~l~~~~-gw~-  231 (296)
                           ......+...+++.|+ ..-..++.......+..|++ +|.+++++-++..- .|-.-+|.+.|.+.|+. ||+ 
T Consensus       345 -----~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~-~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~~  418 (493)
T KOG1330|consen  345 -----TSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPS-RRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYKP  418 (493)
T ss_pred             -----hhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcc-cccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCCc
Confidence                 0011122222333332 22223344555566777744 78999999555444 45555566889888764 666 


Q ss_pred             ---------hhHHHHHHHHHHHHHH
Q 045564          232 ---------LGSGLNIAANLAGVVI  247 (296)
Q Consensus       232 ---------~~F~i~~~~~~~~~~~  247 (296)
                               -....+++..+.+...
T Consensus       419 ~~~~~~~~~~s~~~~a~~l~~a~~~  443 (493)
T KOG1330|consen  419 AGGIDSVLQTSLRLCAALLAKALIW  443 (493)
T ss_pred             cccccccccchhhhhHHHHHHHHHH
Confidence                     2344555555544443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=94.41  E-value=1.4  Score=43.36  Aligned_cols=159  Identities=13%  Similarity=0.035  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHHHhCCC----hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchH-------HHHHHHHHHHHHHHHHHHhh
Q 045564           70 WVANLMVYMIQEFHIT----SINSALISNIVNGFVNLFPVLGAIIADSFLGSF-------QVIWISSFISLLGTILLDST  138 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s----~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~-------~~i~i~~~l~~ig~~~la~~  138 (296)
                      ..+.+..|..+..+.+    .....+..+...+...+..++..++--+ +||+       .-+-++..+...+.+++..+
T Consensus       303 ~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~-l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~  381 (498)
T COG3104         303 MGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTK-LGRGNKQPSTPIKFALGLILAGLGFLILLLA  381 (498)
T ss_pred             ccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhH-hhcCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            4455566665543332    1233455666666666677777777666 4544       24666777777777766655


Q ss_pred             ccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHH
Q 045564          139 ATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISS  218 (296)
Q Consensus       139 ~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p  218 (296)
                      ... .-            ++++..+.+.++.+.++.++|.=...|...++++.+-|++ -.+..++.+.+....|..++.
T Consensus       382 ~~~-~~------------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~-~~s~~ma~wfLt~a~~~~l~g  447 (498)
T COG3104         382 GIW-FG------------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPA-LKSFIMAMWFLTVAAGQTLGG  447 (498)
T ss_pred             HHh-hc------------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHhhc
Confidence            211 00            0011134567778888999999999999999999999943 566677777777777777766


Q ss_pred             HHHHh------hhccccchhhHHHHHHHHHH
Q 045564          219 AAFVY------IEDNLSWRLGSGLNIAANLA  243 (296)
Q Consensus       219 ~v~~~------l~~~~gw~~~F~i~~~~~~~  243 (296)
                      .+++.      ..+.......|+..+....+
T Consensus       448 ~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~  478 (498)
T COG3104         448 QVAGLTAVTDPAYTAFIEGRVFGTIGVVAIV  478 (498)
T ss_pred             eecccccccchhhhhhhhhhhHHHHHHHHHH
Confidence            55552      12223445566665554433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=94.35  E-value=0.049  Score=53.91  Aligned_cols=62  Identities=15%  Similarity=0.206  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHH-HHHHHHHHH
Q 045564           70 WVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWIS-SFISLLGTI  133 (296)
Q Consensus        70 ~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~-~~l~~ig~~  133 (296)
                      +...+++|. +.+|+++.+.+.++..--++.++..|+.|++|||+ =++|.++++ .+......+
T Consensus        30 l~pll~vy~-kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v~a~f   92 (618)
T KOG3762|consen   30 LFPLLAVYF-KQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSVTATF   92 (618)
T ss_pred             cchHHHHHH-HHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHHHHHH
Confidence            445566666 57999999999999999999999999999999995 555544444 444444333

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.32  E-value=4.3  Score=39.85  Aligned_cols=119  Identities=13%  Similarity=0.061  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHhhhh--cchHHHHHHHHHHHHHHHHHHHhhccccCCCCC-ccCCCCcCcCCCCchhhHHHHHHHH
Q 045564           96 VNGFVNLFPVLGAIIADSF--LGSFQVIWISSFISLLGTILLDSTATFDSLRPQ-RCDIGLSLCKAPSKVQFAVLYSGIA  172 (296)
Q Consensus        96 ~~~~~~~~~l~~G~laDr~--iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~-~c~~~~~~~~~~~~~~~~~l~~~~~  172 (296)
                      -..+..++.++.+.+++|.  +||++++.++.++..++.++.-+.  .|.-.+- +-++. +....   ......++.-+
T Consensus       288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~--~p~dap~~~t~~~-~~~~~---~~~~~~~ii~~  361 (461)
T KOG3098|consen  288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLS--FPNDAPLRPTDSP-PLLFT---PSYYLALIIGF  361 (461)
T ss_pred             HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcc--ccccCCCCCCccc-ccccc---cchhHHHHHHH
Confidence            3344555566667776552  699999999999988877765554  3432210 00000 00001   12334455557


Q ss_pred             HHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 045564          173 LACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFV  222 (296)
Q Consensus       173 l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~  222 (296)
                      +.|++-+......+.++++.+|+  +|..+|+++-+-..++..++.....
T Consensus       362 l~G~~D~~~~t~~~~ii~~~~~~--~~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  362 LLGFGDACFNTQRYVIIALLYPD--DRAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHhhhhh
Confidence            88889889999999999999974  3677787755555555554444333

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.23  E-value=3.6  Score=40.05  Aligned_cols=132  Identities=14%  Similarity=0.084  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCC
Q 045564           72 ANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDI  151 (296)
Q Consensus        72 ~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~  151 (296)
                      ..+..|+... |++....+..-+...+....+..+..++-+| +|--|+=.++......+..+...+.+.|.-       
T Consensus       279 ~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~~-------  349 (432)
T PF06963_consen  279 GLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPGS-------  349 (432)
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCCC-------
Confidence            4466788766 9999999999999999999999999999999 799999888888776655554444322211       


Q ss_pred             CCcCcCCC-CchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 045564          152 GLSLCKAP-SKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAA  220 (296)
Q Consensus       152 ~~~~~~~~-~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v  220 (296)
                             + +..+...++.+.++-=+|.=+..-+..-++-|..|++ +|+...+.-+-..++.-++...+
T Consensus       350 -------~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~-~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  350 -------PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPES-ERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             -------CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHH-HhhHHHHHHHHHHHHHHHHHHHH
Confidence                   1 1123444555544444565566667777777888744 78998888665666666665433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.00  E-value=0.015  Score=58.05  Aligned_cols=155  Identities=15%  Similarity=0.182  Sum_probs=0.0

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHHHHHHHHHhhhh-cchHHHHHHHHHHHHHHHHHHHhhccccC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNG-FVNLFPVLGAIIADSF-LGSFQVIWISSFISLLGTILLDSTATFDS  143 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~-~~~~~~l~~G~laDr~-iGR~~~i~i~~~l~~ig~~~la~~~~~p~  143 (296)
                      ..-|..+++|-|++.++++++.++..+..+..+ +..+|.++||++..|+ ++.|+.+.+..+...++.+...... +  
T Consensus       320 ~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~-~--  396 (539)
T PF03137_consen  320 IVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLF-F--  396 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHH-e--
Confidence            566678999999999999999999887765444 7788999999999994 3456666665555554443311110 0  


Q ss_pred             CCCCccCCC-------------------------------------CcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhh
Q 045564          144 LRPQRCDIG-------------------------------------LSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLA  186 (296)
Q Consensus       144 ~~~~~c~~~-------------------------------------~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~  186 (296)
                         ..|++-                                     .+.|..+=...+..|++..++..+..+.......
T Consensus       397 ---~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~  473 (539)
T PF03137_consen  397 ---LGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPST  473 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---ecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchh
Confidence               112111                                     1122211011234455555554444444444344


Q ss_pred             hhhhccCCCccchhhHHHHHHHHH-HHHHHHHHHHHHhhhcc
Q 045564          187 TMGANQFEIPQHQGIFFNWFFILT-YASTVISSAAFVYIEDN  227 (296)
Q Consensus       187 ~~~ad~f~~~~~r~~~f~~~y~~~-~iG~~i~p~v~~~l~~~  227 (296)
                      ...-+..| ++.|.-+.++..+.. -+|.+-||++-|++.|.
T Consensus       474 ~i~LR~V~-~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  474 LITLRCVP-PEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ------------------------------------------
T ss_pred             eeeeccCC-hhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            44445565 336777777744433 46788899999999885

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=92.96  E-value=1.2  Score=42.80  Aligned_cols=155  Identities=15%  Similarity=0.103  Sum_probs=83.1

Q ss_pred             ccCCchhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhh-----hhcchHHHH
Q 045564           49 KRGGRTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIAD-----SFLGSFQVI  121 (296)
Q Consensus        49 ~~~~~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laD-----r~iGR~~~i  121 (296)
                      .++.++.+..+.+... . .-+|... ..+++-+.-|.|-++.+.....+  .-+-.-++.+++.|     | +||||.-
T Consensus        26 ~~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~-~GrrksW  101 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKR-FGRRKSW  101 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHh-hccccce
Confidence            4566777777777777 5 7777777 44455556677766643322211  12234567888889     8 8999975


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCc-CCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchh
Q 045564          122 WISSFISLLGTILLDSTATFDSLRPQRCDIGLSLC-KAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQG  200 (296)
Q Consensus       122 ~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~-~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~  200 (296)
                      ++-+ -+.+|..++.++-..+-.          .. ++.. .+...+-...+++-++.+...-.+-+..-.+.. ++..+
T Consensus       102 vvp~-q~llG~~mllLs~~v~~~----------~g~ng~~-p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs-~e~lg  168 (510)
T KOG3574|consen  102 VVPC-QYLLGLFMLLLSYLVDRG----------LGGNGGL-PNVVALTLLFLLLNFLAATQDIAVDGWALTMLS-RENLG  168 (510)
T ss_pred             eeeh-HHHHHHHHHHHhhCCCcc----------cccCCCC-cchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcC-HhhcC
Confidence            5532 223344444444311111          11 1111 122222223345556666655555555555554 44455


Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 045564          201 IFFNWFFILTYASTVISSAA  220 (296)
Q Consensus       201 ~~f~~~y~~~~iG~~i~p~v  220 (296)
                      .+-....++.+.|.+++..+
T Consensus       169 yaST~q~Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  169 YASTCQSVGQTAGYFLGNVV  188 (510)
T ss_pred             chhHHHHHHHhhhHHhhcce
Confidence            55555566677777766543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=91.18  E-value=0.49  Score=46.57  Aligned_cols=195  Identities=13%  Similarity=0.004  Sum_probs=96.1

Q ss_pred             CCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHH--HHHHHHHHHHHHhhhhcch---HHHHH
Q 045564           51 GGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNG--FVNLFPVLGAIIADSFLGS---FQVIW  122 (296)
Q Consensus        51 ~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~--~~~~~~l~~G~laDr~iGR---~~~i~  122 (296)
                      -.|+..+.++...+  . .+..+.+-.+......++++..++....++...  +.....+...+..-| +|+   |+.+.
T Consensus       259 ~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~-l~~i~~r~~~~  337 (488)
T KOG2325|consen  259 LDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTR-LGKIDKRRIIL  337 (488)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHH-hhhhccceeee
Confidence            34555555555444  3 444434444455555677766665443333222  222223333444445 343   45555


Q ss_pred             HHHHHHHHHHHHHHhhc-c--ccCCC-----CCccCCCCcCcCCCCchhhHHHHHHH-HHHHHhhchhhhhhhhhhhccC
Q 045564          123 ISSFISLLGTILLDSTA-T--FDSLR-----PQRCDIGLSLCKAPSKVQFAVLYSGI-ALACLGLGGLRFTLATMGANQF  193 (296)
Q Consensus       123 i~~~l~~ig~~~la~~~-~--~p~~~-----~~~c~~~~~~~~~~~~~~~~~l~~~~-~l~gig~g~~~~~~~~~~ad~f  193 (296)
                      ++.++....+.+...+- +  .|...     .-+|.+..+-|....-.+...++++. ++.|++.-.+.....+..+++.
T Consensus       338 ~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiL  417 (488)
T KOG2325|consen  338 LGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKIL  417 (488)
T ss_pred             ehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHh
Confidence            55444333333222220 0  01100     00111111223222222333444442 3344555555566777778888


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Q 045564          194 EIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       194 ~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~  247 (296)
                      .++ ..+..-+++.+...++-.+||+....+-..+|.++...+.....++...+
T Consensus       418 gp~-~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l  470 (488)
T KOG2325|consen  418 GPR-DQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAAL  470 (488)
T ss_pred             CCc-cccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHH
Confidence            633 34555555667778888899999888887788887766666554444433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.12  E-value=2.1  Score=41.96  Aligned_cols=88  Identities=14%  Similarity=-0.012  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHH
Q 045564           92 ISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGI  171 (296)
Q Consensus        92 i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~  171 (296)
                      ...+-.....++.++++.+-|. +|.|..+.++...+..-.+.....                        +...++.+-
T Consensus        55 ~~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~~------------------------N~y~~yfss  109 (461)
T KOG3098|consen   55 GQAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLFP------------------------NSYYLYFSS  109 (461)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHhc------------------------chHHHHHHH
Confidence            3666667788889999999999 799999999999887633322111                        236788899


Q ss_pred             HHHHHhhchhhhhhhhhhhccCCCccchhhHHHH
Q 045564          172 ALACLGLGGLRFTLATMGANQFEIPQHQGIFFNW  205 (296)
Q Consensus       172 ~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~  205 (296)
                      +++|+|.+..+.....++++-.. ++.+.+..++
T Consensus       110 allG~Gaallw~GqG~ylt~~st-~~tie~Nisi  142 (461)
T KOG3098|consen  110 ALLGFGAALLWTGQGGYLTSNST-RETIERNISI  142 (461)
T ss_pred             HHhhhhHHheecccceehhhcCC-hhhHHHHHHH
Confidence            99999999999999999998776 3344444443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=90.44  E-value=7  Score=40.17  Aligned_cols=131  Identities=13%  Similarity=-0.004  Sum_probs=95.0

Q ss_pred             hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCc
Q 045564           82 FHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSK  161 (296)
Q Consensus        82 lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~  161 (296)
                      .+...........++.....+..+.....+|-.-|+...+..-.+..+++.+...+.+ ++.              .+..
T Consensus        15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~lla-i~a--------------~~~~   79 (654)
T TIGR00926        15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLS-FGA--------------IPSS   79 (654)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hcc--------------Cccc
Confidence            3444456677889999999999999999999987888888888888888777666543 211              0111


Q ss_pred             hhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 045564          162 VQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQ--GIFFNWFFILTYASTVISSAAFVYIEDNL  228 (296)
Q Consensus       162 ~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r--~~~f~~~y~~~~iG~~i~p~v~~~l~~~~  228 (296)
                      .......++.+.++++.++..++.+.+.+++++.-..+  .+..++|++..+.+. +|.+++..+....
T Consensus        80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iN-iGSlis~~i~~~l  147 (654)
T TIGR00926        80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAIN-AGSLISTIITPIL  147 (654)
T ss_pred             ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            11233455677788899999999999999999755443  358888999888776 4567777776544

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=87.10  E-value=5.7  Score=36.65  Aligned_cols=78  Identities=12%  Similarity=0.012  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Q 045564          168 YSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVV  246 (296)
Q Consensus       168 ~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~  246 (296)
                      +++-.+.-...|..+|.+.-+-.+..|++ .|.+.+|||-+..|+-.-++-...---....+-|..|.++.+.+.++.+
T Consensus       348 ~i~F~~~E~cvGlfwPSimkmRsqyIPEe-arstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  348 LIGFCLFEACVGLFWPSIMKMRSQYIPEE-ARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASI  425 (454)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHhhCCHH-HHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHH
Confidence            44545666778889999988888888854 6899999998888876554322111001124567789998887766654

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.01  E-value=2.7  Score=43.45  Aligned_cols=70  Identities=19%  Similarity=0.250  Sum_probs=52.8

Q ss_pred             H-hHHHhHHHHHHHHHHHhCCChhHHHHHH-HHHHHHHHHHHHHHHHHhhhh-cchHHHHHHHHHHHHHHHHH
Q 045564           65 T-LGEGWVANLMVYMIQEFHITSINSALIS-NIVNGFVNLFPVLGAIIADSF-LGSFQVIWISSFISLLGTIL  134 (296)
Q Consensus        65 ~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~-~~~~~~~~~~~l~~G~laDr~-iGR~~~i~i~~~l~~ig~~~  134 (296)
                      . .+-|..+++|-|+.+.+|.+...|..+. .+...+..+|.++||++.-|+ +.-|.+..+..+...+.++.
T Consensus       405 ~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~  477 (735)
T KOG3626|consen  405 SLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF  477 (735)
T ss_pred             HHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence            5 7778899999999999999999999877 455567788899999999984 34555555555544444433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=83.37  E-value=7.1  Score=38.49  Aligned_cols=70  Identities=13%  Similarity=0.069  Sum_probs=52.0

Q ss_pred             HHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Q 045564          174 ACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLA  243 (296)
Q Consensus       174 ~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~  243 (296)
                      .++........--..+.+++|++..|...++-+....++..++..++.+.+.+..||...-.+.-+++++
T Consensus       276 y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       276 YGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3344445556666778899998888999999988888888866666679999999999776665544434

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=80.66  E-value=25  Score=33.23  Aligned_cols=140  Identities=15%  Similarity=0.062  Sum_probs=75.8

Q ss_pred             cCCchhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH
Q 045564           50 RGGRTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFI  127 (296)
Q Consensus        50 ~~~~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l  127 (296)
                      ++.-|.+..+-...+ . ..|.-..++.+.....+|..+..+      ....-....++.+.+-.+ +|-|.++.++...
T Consensus        25 ~~~~knv~i~s~~fl~~f~a~~gl~nlq~~vn~~lg~~sl~~------~y~~l~~s~m~~~~~Ir~-~g~K~tm~lav~~   97 (390)
T KOG3097|consen   25 LGILKNVLILSIAFLLTFTAYLGLQNLQTSVNYDLGTVSLGA------LYLSLIDSSMFMPLLIRF-LGTKWTMVLAVFP   97 (390)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhh------hhHHHHHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence            344455544444333 4 556666777777665544322111      112223333444455555 8999999998887


Q ss_pred             HHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCC-ccch-------
Q 045564          128 SLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEI-PQHQ-------  199 (296)
Q Consensus       128 ~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~-~~~r-------  199 (296)
                      +..-..    ....|                    ..-.+..+-...|+|.+..++...+++++.-.. .+.|       
T Consensus        98 Y~lyiA----~Nl~p--------------------r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~~  153 (390)
T KOG3097|consen   98 YALYIA----ANLEP--------------------RYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGDG  153 (390)
T ss_pred             HHHHHH----hhcch--------------------hHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccCc
Confidence            765221    22122                    123345555677888888888777777765430 0112       


Q ss_pred             ------hhHHHHHHHHHHHHHHHHHHH
Q 045564          200 ------GIFFNWFFILTYASTVISSAA  220 (296)
Q Consensus       200 ------~~~f~~~y~~~~iG~~i~p~v  220 (296)
                            +-+|.+++.+.-+|..++.++
T Consensus       154 ~~~~ffg~Ffii~~~~qv~gn~issli  180 (390)
T KOG3097|consen  154 MKVRFFGEFFIIFQCAQVWGNLISSLI  180 (390)
T ss_pred             eeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence                  334455565656665555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
2xut_A	524	Proton/peptide symporter family protein; transport	3e-20
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	4e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score = 89.3 bits (222), Expect = 3e-20
 Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 43/228 (18%)

Query: 72  ANLMVYMIQEFH------ITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISS 125
             L  +++          +    +  + +     V  FP+LG  IAD F G +  I   S
Sbjct: 33  NILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLS 92

Query: 126 FISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTL 185
            I  +G   L                      A  +      Y+G+ L  LG GG++  +
Sbjct: 93  LIYCVGHAFL----------------------AIFEHSVQGFYTGLFLIALGSGGIKPLV 130

Query: 186 ATMGANQFEI--PQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLA 243
           ++   +QF+          F+ F+      +  +S +   +  N    +  G+       
Sbjct: 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFV 190

Query: 244 GVVIFLSGKHFY-------------FPVIVASVKKWKPVLSSRSEDYY 278
             V F  G+  Y              PVI +++        +      
Sbjct: 191 ATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLA 238

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 34/203 (16%), Positives = 67/203 (33%), Gaps = 29/203 (14%)

Query: 72  ANLMVYMI-----QEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSF 126
           A L+ YM       + HIT   +A I  I    V L   +G  +AD  +G+   ++    
Sbjct: 34  AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93

Query: 127 ISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLA 186
           + +LG I+L   A                         + L+  I L  +G G L+  ++
Sbjct: 94  LIMLGHIVL---ALPFGA--------------------SALFGSIILIIIGTGFLKPNVS 130

Query: 187 TMGANQFEI-PQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGV 245
           T+    ++   + +   F+ F         I+       ++   + +   L       G+
Sbjct: 131 TLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGL 190

Query: 246 VIFLSGKHFYFPVIVASVKKWKP 268
           +++  G                 
Sbjct: 191 LVYYFGGKKTLDPHYLRPTDPLA 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.85
2xut_A	524	Proton/peptide symporter family protein; transport	99.78
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.77
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.74
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.66
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.59
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.54
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.51
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.38
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.26
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.25
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.2
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.84
2xut_A	524	Proton/peptide symporter family protein; transport	98.17

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.85  E-value=2.2e-20  Score=178.55  Aligned_cols=180  Identities=21%  Similarity=0.283  Sum_probs=153.7

Q ss_pred             ccCCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHH-----hCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHH
Q 045564           49 KRGGRTALLSRTVTCL--T-LGEGWVANLMVYMIQE-----FHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQV  120 (296)
Q Consensus        49 ~~~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~-----lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~  120 (296)
                      .++++|.++.+++..+  . .+|++..+++.|+++.     +|++..+.+++.+++.++..++.+++|+++||++|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~   87 (491)
T 4aps_A            8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA   87 (491)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            4567777777777666  6 8899999999999998     999999999999999999999999999999994499999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCc-cch
Q 045564          121 IWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIP-QHQ  199 (296)
Q Consensus       121 i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~-~~r  199 (296)
                      +.++.++..++.++++++.                       +...++++|++.|++.|...+...++++|.+|++ +.|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r  144 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALPF-----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRR  144 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCC-----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccc
Confidence            9999999999888776542                       2457888999999999999999999999999843 237


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhC
Q 045564          200 GIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSG  251 (296)
Q Consensus       200 ~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~  251 (296)
                      +.++++++.+.++|..++|.+++++.+..||++.|++.++..++++++++..
T Consensus       145 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          145 DAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            7889989999999999999999999998999999999888776666655433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.78  E-value=7.2e-18  Score=162.58  Aligned_cols=179  Identities=18%  Similarity=0.262  Sum_probs=148.7

Q ss_pred             CCchhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhC------CChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-chHHH
Q 045564           51 GGRTALLSRTVTCL--T-LGEGWVANLMVYMIQEFH------ITSINSALISNIVNGFVNLFPVLGAIIADSFL-GSFQV  120 (296)
Q Consensus        51 ~~~~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg------~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~i-GR~~~  120 (296)
                      .++|.++.+++..+  + .+|++..+++.|+++++|      ++..+++++.+++.++..++.+++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~   87 (524)
T 2xut_A            9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNT   87 (524)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHH
Confidence            34555555555555  6 888899999999999999      999999999999999999999999999999 7 99999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccch-
Q 045564          121 IWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQ-  199 (296)
Q Consensus       121 i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r-  199 (296)
                      +.++.++..++.++++++.                      .+...++++|++.|++.+...+...++++|.+|++ +| 
T Consensus        88 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~r~  144 (524)
T 2xut_A           88 ILWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS-NKS  144 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTS----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT-TTT
T ss_pred             HHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc-chH
Confidence            9999999998887766542                      03467888999999999999999999999999944 44 


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCC
Q 045564          200 --GIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKH  253 (296)
Q Consensus       200 --~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~~~  253 (296)
                        ...+++++.+.++|..++|.+++++.+..||++.|++.++..+++.++++...+
T Consensus       145 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  200 (524)
T 2xut_A          145 LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK  200 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              456777899999999999999999998889999999988877776665554443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.77  E-value=3.7e-17  Score=153.30  Aligned_cols=176  Identities=15%  Similarity=0.110  Sum_probs=141.5

Q ss_pred             cCCchhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH
Q 045564           50 RGGRTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFI  127 (296)
Q Consensus        50 ~~~~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l  127 (296)
                      +.+++.+..+....+ . ..+.....+..++.+++|.+..+.+++.+++.++..++.+++|+++|| +|||+++.++.++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~  100 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFL  100 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHH
Confidence            344555555544444 3 333455555667889999999999999999999999999999999999 7999999999999


Q ss_pred             HHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHH
Q 045564          128 SLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFF  207 (296)
Q Consensus       128 ~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y  207 (296)
                      ..++.++.......                    .+.+.++++|++.|++.+...+...++++|.+|++ +|+..+++++
T Consensus       101 ~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~  159 (438)
T 3o7q_A          101 YALGAALFWPAAEI--------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES-SGHFRLNLAQ  159 (438)
T ss_dssp             HHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST-THHHHHHHHH
T ss_pred             HHHHHHHHHhcccc--------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch-hHHHHHHHHH
Confidence            99988887432211                    14578899999999999999999999999999954 7899999999


Q ss_pred             HHHHHHHHHHHHHHHhhh-cccc-------------------------chhhHHHHHHHHHHHHHH
Q 045564          208 ILTYASTVISSAAFVYIE-DNLS-------------------------WRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       208 ~~~~iG~~i~p~v~~~l~-~~~g-------------------------w~~~F~i~~~~~~~~~~~  247 (296)
                      .+.++|..++|.+++++. +..+                         ||+.|++.++..++..++
T Consensus       160 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  225 (438)
T 3o7q_A          160 TFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL  225 (438)
T ss_dssp             HHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988 5544                         999998777655444433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.74  E-value=2.6e-17  Score=154.69  Aligned_cols=169  Identities=9%  Similarity=0.001  Sum_probs=137.4

Q ss_pred             chhHHHHHHHHH-H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHH
Q 045564           53 RTALLSRTVTCL-T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLL  130 (296)
Q Consensus        53 ~~~~~~l~~~~~-~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~i  130 (296)
                      ++.+..++...+ . ...........++.+++ .+..+.+++.+++.++..++.+++|+++|| +|||+++.++.++..+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~  104 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAA  104 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHH
Confidence            444444444444 3 22223334444555677 999999999999999999999999999999 7999999999999999


Q ss_pred             HHHHHHh----hccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHH
Q 045564          131 GTILLDS----TATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWF  206 (296)
Q Consensus       131 g~~~la~----~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~  206 (296)
                      +.+++++    +.                       +...++++|++.|++.+...+...++++|.+|+ ++|+..++++
T Consensus       105 ~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~  160 (451)
T 1pw4_A          105 VMLFMGFVPWATS-----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-KERGGIVSVW  160 (451)
T ss_dssp             HHHHHHHCHHHHS-----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-THHHHHHHHH
T ss_pred             HHHHHHhhhhccc-----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-hhhhHHHHHH
Confidence            9888876    32                       235788899999999999999999999999984 4799999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccc-chhhHHHHHHHHHHHHHH
Q 045564          207 FILTYASTVISSAAFVYIEDNLS-WRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       207 y~~~~iG~~i~p~v~~~l~~~~g-w~~~F~i~~~~~~~~~~~  247 (296)
                      +.+.++|..++|.+++++.+..| ||+.|++.++..++..++
T Consensus       161 ~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~  202 (451)
T 1pw4_A          161 NCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF  202 (451)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888888 999999988766554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.66  E-value=5.6e-16  Score=142.86  Aligned_cols=147  Identities=14%  Similarity=0.113  Sum_probs=130.3

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCc
Q 045564           75 MVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLS  154 (296)
Q Consensus        75 ~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~  154 (296)
                      .+.+.+++|.+..+.+++.+++.++..++.++.|+++|| +||||++.++.++..++.+++.+..               
T Consensus        23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~---------------   86 (375)
T 2gfp_A           23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTTS---------------   86 (375)
T ss_dssp             HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHHHHHH---------------
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhc---------------
Confidence            344567899999999999999999999999999999999 7999999999999999888776543               


Q ss_pred             CcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccccchhhH
Q 045564          155 LCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNLSWRLGS  234 (296)
Q Consensus       155 ~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~gw~~~F  234 (296)
                              +...++++|++.|++.+...+...+++.|.+|++ +|++.++++....++|..++|.+++++.+..|||+.|
T Consensus        87 --------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  157 (375)
T 2gfp_A           87 --------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT-QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACY  157 (375)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             --------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHH
Confidence                    4567888999999999999999999999999844 6899999999999999999999999999888999999


Q ss_pred             HHHHHHHHHHHH
Q 045564          235 GLNIAANLAGVV  246 (296)
Q Consensus       235 ~i~~~~~~~~~~  246 (296)
                      ++.++..++..+
T Consensus       158 ~~~~~~~~~~~~  169 (375)
T 2gfp_A          158 LFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            988876665554

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.59  E-value=3.6e-14  Score=135.19  Aligned_cols=163  Identities=7%  Similarity=-0.049  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHH
Q 045564           87 INSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAV  166 (296)
Q Consensus        87 ~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~  166 (296)
                      ...+++++++.++..++++++|+++|| +|||+++.++.+++.++.++.+++........   .......  .-..+...
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~---~~~~~~~--~~a~~~~~  128 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSIN---PDNTVPV--YLAGYVPE  128 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS---SSSSCCG--GGGGCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc---chhHHHH--HHhhhHHH
Confidence            455678889999999999999999999 79999999999999999988875421000000   0000000  00135678


Q ss_pred             HHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc--------ccchhhHHHHH
Q 045564          167 LYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDN--------LSWRLGSGLNI  238 (296)
Q Consensus       167 l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~--------~gw~~~F~i~~  238 (296)
                      ++++|++.|+|.|+..+..+++++|..|+ ++|+...+++..+..+|.++++.+...+...        .+|++.+.+..
T Consensus       129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (491)
T 4gc0_A          129 FVIYRIIGGIGVGLASMLSPMYIAELAPA-HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASEC  207 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCH-HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhh
Confidence            99999999999999999999999999994 4789999998899999998888777665432        35777776666


Q ss_pred             HHHHHHHHH--HHhCCCchh
Q 045564          239 AANLAGVVI--FLSGKHFYF  256 (296)
Q Consensus       239 ~~~~~~~~~--~~~~~~~~~  256 (296)
                      +..++.++.  +.+++|||.
T Consensus       208 ~~~~~~~~~~~~~peSp~~L  227 (491)
T 4gc0_A          208 IPALLFLMLLYTVPESPRWL  227 (491)
T ss_dssp             HHHHHHHHHGGGSCCCHHHH
T ss_pred             hhhhhhhhhhhcCCCChHHH
Confidence            544443333  334566664

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.54  E-value=4.1e-13  Score=125.90  Aligned_cols=174  Identities=14%  Similarity=0.075  Sum_probs=138.6

Q ss_pred             hhHHHHHHHHH--H-hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc--chHHHHHHHHHHH
Q 045564           54 TALLSRTVTCL--T-LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFL--GSFQVIWISSFIS  128 (296)
Q Consensus        54 ~~~~~l~~~~~--~-~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~i--GR~~~i~i~~~l~  128 (296)
                      |.++.+++..+  . .+++...+++.|+.+.+|++..+++.+.+...++..++.++.|+++|| +  |||+.+.++.++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL  330 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence            33444444444  5 777788899999988899999999999999999999999999999999 8  9999988877766


Q ss_pred             H-HHHHHHHhhccccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHH
Q 045564          129 L-LGTILLDSTATFDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFF  207 (296)
Q Consensus       129 ~-ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y  207 (296)
                      . ++.+++.+.   +.                  .+...+.+..++.|++.+...+...++..|.+|++ .|++++++++
T Consensus       331 ~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~  388 (451)
T 1pw4_A          331 VTIATIVYWMN---PA------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK-AAGTAAGFTG  388 (451)
T ss_dssp             HHHHHHHTTSC---CT------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHh---cc------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh-hhhhHHHHHH
Confidence            5 544433221   10                  12345666677888888888888899999999954 7899999999


Q ss_pred             HHHHH-HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHh
Q 045564          208 ILTYA-STVISSAAFVYIEDNLSWRLGSGLNIAANLAGVVIFLS  250 (296)
Q Consensus       208 ~~~~i-G~~i~p~v~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~  250 (296)
                      ...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus       389 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          389 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999 99999999999999999999999988877776655543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.51  E-value=1e-12  Score=122.89  Aligned_cols=154  Identities=8%  Similarity=-0.009  Sum_probs=123.5

Q ss_pred             hHHHhHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCC
Q 045564           66 LGEGWVANLMVY-MIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSL  144 (296)
Q Consensus        66 ~~y~~~~~l~~y-l~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~  144 (296)
                      ..++...+++.| +++.+|++..+++.+.++..++..++.+++|+++|| +|||+.+.++.++..++.+++.+..     
T Consensus       273 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~-----  346 (438)
T 3o7q_A          273 AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAG-----  346 (438)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHcC-----
Confidence            667777899999 888889999999999999999999999999999999 7999999999988877766554332     


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                                        +.. ..+..++.+++.+...+...++..|.+|++  ++.+.++.. ...+|+.++|.+.|++
T Consensus       347 ------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~g~~~~~~~~g~l  404 (438)
T 3o7q_A          347 ------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD--TKYGSSFIV-MTIIGGGIVTPVMGFV  404 (438)
T ss_dssp             ------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG--HHHHHHHHH-HTTHHHHHHHHHHHHH
T ss_pred             ------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc--ccchhhHHH-HHHHHHHHHHHHHHHH
Confidence                              112 233446788888888999999999999844  555555544 4569999999999999


Q ss_pred             hcccc-chhhHHHHHHHHHHHHHH
Q 045564          225 EDNLS-WRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       225 ~~~~g-w~~~F~i~~~~~~~~~~~  247 (296)
                      .+..| ++..|++.+++.++.++.
T Consensus       405 ~~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          405 SDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             HHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHH
Confidence            99888 999999877766554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.38  E-value=7.2e-12  Score=117.92  Aligned_cols=160  Identities=9%  Similarity=0.024  Sum_probs=116.1

Q ss_pred             hHHHhHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhcccc
Q 045564           66 LGEGWVANLMVYMIQEFHIT---SINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFD  142 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s---~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p  142 (296)
                      .++....+++.|+.+.++..   ....+...++..++..++.+++|+++|| +|||+++.++.++..++.+++++..   
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~---  310 (417)
T 2cfq_A          235 TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT---  310 (417)
T ss_dssp             HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred             HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            44444556788887666532   3344566666677788889999999999 7999999888887776654443221   


Q ss_pred             CCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHH-HHHHHHHHHHHHHHHH
Q 045564          143 SLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNW-FFILTYASTVISSAAF  221 (296)
Q Consensus       143 ~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~-~y~~~~iG~~i~p~v~  221 (296)
                                          +...+++..++.+++.+...+....+.+|.+|+ +.|++++++ ++.+..+|+.++|.+.
T Consensus       311 --------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~lg~~~gp~l~  369 (417)
T 2cfq_A          311 --------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-RFSATIYLVCFCFFKQLAMIFMSVLA  369 (417)
T ss_dssp             --------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHTTTHHHHHHHHTHHH
T ss_pred             --------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHhHHHHHhhhhH
Confidence                                123444555556666666666678899999995 478888888 5777789999999999


Q ss_pred             HhhhccccchhhHHHHHHHHHHHHHHHHh
Q 045564          222 VYIEDNLSWRLGSGLNIAANLAGVVIFLS  250 (296)
Q Consensus       222 ~~l~~~~gw~~~F~i~~~~~~~~~~~~~~  250 (296)
                      |++.+..|++..|.+.+++.+++.++.+.
T Consensus       370 G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          370 GNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence            99998888888998888877766655443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.26  E-value=5.6e-13  Score=125.55  Aligned_cols=157  Identities=13%  Similarity=0.023  Sum_probs=101.9

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      .+.....+++.|+++++|++..+++.+.+++.++..++.+++|+++|| +||||++.++.++..++...+......+.. 
T Consensus        22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~-   99 (417)
T 2cfq_A           22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGPLL-   99 (417)
T ss_dssp             HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCHHHHHHHTHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            444556788999999999999999999999999999999999999999 799999998887665422111110100000 


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCC-ccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEI-PQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~-~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                                        ...++.++.+.+++.|...+...+...+..++ .++++..++......++|..++|.+++++
T Consensus       100 ------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l  161 (417)
T 2cfq_A          100 ------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIM  161 (417)
T ss_dssp             ------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHH
T ss_pred             ------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence                              00012233333333333333223333333221 12345456665666788999999999999


Q ss_pred             hccccchhhHHHHHHHHHH
Q 045564          225 EDNLSWRLGSGLNIAANLA  243 (296)
Q Consensus       225 ~~~~gw~~~F~i~~~~~~~  243 (296)
                      .+ .+|++.|++.++..++
T Consensus       162 ~~-~~~~~~f~~~~~~~~~  179 (417)
T 2cfq_A          162 FT-INNQFVFWLGSGCALI  179 (417)
T ss_dssp             HH-HCSHHHHTTTTTTTTT
T ss_pred             HH-hchhHHHHHHHHHHHH
Confidence            86 5899999877665433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.25  E-value=5e-11  Score=113.49  Aligned_cols=172  Identities=10%  Similarity=0.019  Sum_probs=124.2

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHH-----HHHHHHHHHHHHHHhhcc
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIW-----ISSFISLLGTILLDSTAT  140 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~-----i~~~l~~ig~~~la~~~~  140 (296)
                      .++.....++.|+.+.++.+..+.+...+...+...++.++.|+++|| +|||+...     ++.++..++.+++.+...
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (491)
T 4aps_A          298 IEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGA  376 (491)
T ss_dssp             HHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred             HHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            555566778889988888887778888888888999999999999999 79986554     666666665554443321


Q ss_pred             ccCCCCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 045564          141 FDSLRPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAA  220 (296)
Q Consensus       141 ~p~~~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v  220 (296)
                      ...              .+...+...+.+..++.+++.+...+...++..|.+|++ .|+.+.++++...++|..++|.+
T Consensus       377 ~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~-~~g~~~g~~~~~~~~g~~i~~~~  441 (491)
T 4aps_A          377 LYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA-FNSQMMSMWFLSSSVGSALNAQL  441 (491)
T ss_dssp             HCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-CSSSSTHHHHHHHHHHHHHHHHH
T ss_pred             hcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            000              000112345666777888999988899999999999954 68999999999999999999999


Q ss_pred             HHhhhccccchhhHHHHHHHHHHHHHHHHhCCCc
Q 045564          221 FVYIEDNLSWRLGSGLNIAANLAGVVIFLSGKHF  254 (296)
Q Consensus       221 ~~~l~~~~gw~~~F~i~~~~~~~~~~~~~~~~~~  254 (296)
                      .+++.+. ++.+.|.+.+++.+++.++++...++
T Consensus       442 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          442 VTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             GGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988764 67778888777666666555554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.20  E-value=5e-10  Score=106.36  Aligned_cols=158  Identities=12%  Similarity=0.061  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccC
Q 045564           71 VANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCD  150 (296)
Q Consensus        71 ~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~  150 (296)
                      ..+..+++.+..+.+..+.........+...++.++++++.|| +|||+.++.+.....++.+.+..... ..       
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~~~-~~-------  366 (491)
T 4gc0_A          296 VLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFY-TQ-------  366 (491)
T ss_dssp             HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHHHH-TT-------
T ss_pred             HHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHHHh-cc-------
Confidence            3344455667788888887777778888899999999999999 79999999998888887766654421 10       


Q ss_pred             CCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhc----
Q 045564          151 IGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIED----  226 (296)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~----  226 (296)
                              . ........+..+..+.+ .+..+....+.+|+||++ .|+++.++.+...++|+.+++.+.+.+.+    
T Consensus       367 --------~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~-~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~  435 (491)
T 4gc0_A          367 --------A-PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNA-IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL  435 (491)
T ss_dssp             --------C-CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTT-THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred             --------c-chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    0 11111222222222222 234566778999999955 79999999888888999998877766643    


Q ss_pred             --cccchhhHHHHHHHHHHHHHHH
Q 045564          227 --NLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       227 --~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                        ..++.+.|++.+++.+++.++.
T Consensus       436 ~~~~~~~~~~~i~~~~~~~~~i~~  459 (491)
T 4gc0_A          436 VAHFHNGFSYWIYGCMGVLAALFM  459 (491)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHH
Confidence              2455667887777666665543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.84  E-value=4.5e-10  Score=103.07  Aligned_cols=150  Identities=13%  Similarity=0.034  Sum_probs=111.2

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHH-HHHHHHHHHhhccccCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFI-SLLGTILLDSTATFDSL  144 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l-~~ig~~~la~~~~~p~~  144 (296)
                      ..++...+++.|+++.+|.+..+++.+.+...++..++.++.|+++|| +||+  +.++..+ ...+...+.... .+  
T Consensus       214 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~~~~~~~~~~~-~~--  287 (375)
T 2gfp_A          214 GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLLAGLLMWIPDW-FG--  287 (375)
T ss_dssp             HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHHTSSSSSHHHH-HH--
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHhh-hc--
Confidence            666677788888888899999999999999999999999999999999 6872  2222222 111111101000 00  


Q ss_pred             CCCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          145 RPQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       145 ~~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                                      ..+.+.+++..++.+++.+...+...++..|.+| + .|++..++++...++|..++|.+.+++
T Consensus       288 ----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~-~~g~~~g~~~~~~~~g~~~~~~~~g~l  349 (375)
T 2gfp_A          288 ----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F-LAGTAGALVGGLQNIGSGVLASLSAML  349 (375)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H-HHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred             ----------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c-ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            0133455667778889999999999999999998 4 689999999999999999999999999


Q ss_pred             hccccchhhHHHHHH
Q 045564          225 EDNLSWRLGSGLNIA  239 (296)
Q Consensus       225 ~~~~gw~~~F~i~~~  239 (296)
                      .+..+++..+.+..+
T Consensus       350 ~~~~~~~~~~~~~~~  364 (375)
T 2gfp_A          350 PQTGQGSLGLLMTLM  364 (375)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hcCCcccHHHHHHHH
Confidence            887778777776443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.17  E-value=2.1e-06  Score=82.05  Aligned_cols=91  Identities=11%  Similarity=0.008  Sum_probs=66.4

Q ss_pred             hHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhccc--cc---------hh
Q 045564          164 FAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDNL--SW---------RL  232 (296)
Q Consensus       164 ~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~~--gw---------~~  232 (296)
                      ...+++..++.+++.+...+...++..|..|++ .|+++.++++...++|..++|.+.+++.+..  +|         +.
T Consensus       405 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~-~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~  483 (524)
T 2xut_A          405 IFWQILPYALLTFGEVLVSATGLEFAYSQAPKA-MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAF  483 (524)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT-CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-HHhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Confidence            345666778889999999999999999999954 7899999999999999999999999987642  23         33


Q ss_pred             hHHHHHHHHHHHHHHHHhCCCch
Q 045564          233 GSGLNIAANLAGVVIFLSGKHFY  255 (296)
Q Consensus       233 ~F~i~~~~~~~~~~~~~~~~~~~  255 (296)
                      .|++.+++.+++.++++...+++
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~  506 (524)
T 2xut_A          484 QMFFFAGFAILAAIVFALYARSY  506 (524)
T ss_dssp             HHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            36666666666665554444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.74
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.47
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.45
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.39

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=9.6e-18  Score=154.31  Aligned_cols=155  Identities=8%  Similarity=-0.015  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccC
Q 045564           71 VANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCD  150 (296)
Q Consensus        71 ~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~  150 (296)
                      ...+.+++. ++|+|.++.+++.+++.++..++.+++|+++|| +|||+++.++.++..++.++.++.....        
T Consensus        44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~--------  113 (447)
T d1pw4a_          44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWAT--------  113 (447)
T ss_dssp             HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHH--------
T ss_pred             HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHhhccccchhh--------
Confidence            344556765 589999999999999999999999999999999 7999999999999998888776543111        


Q ss_pred             CCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc-cc
Q 045564          151 IGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYASTVISSAAFVYIEDN-LS  229 (296)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l~~~-~g  229 (296)
                                 .+...+++.|++.|++.|...+...++++|.+|++ +|+..+++++.+.++|..++|.+.+.+... .+
T Consensus       114 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  181 (447)
T d1pw4a_         114 -----------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK-ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND  181 (447)
T ss_dssp             -----------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT-HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred             -----------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh-cccccccccccccchhhhhhhhhhhhHhhhhhc
Confidence                       12457888999999999999999999999999844 789999999999999999999988877654 48


Q ss_pred             chhhHHHHHHHHHHHHHH
Q 045564          230 WRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       230 w~~~F~i~~~~~~~~~~~  247 (296)
                      |++.|++..++.++..++
T Consensus       182 w~~~~~~~~~~~~~~~~~  199 (447)
T d1pw4a_         182 WHAALYMPAFCAILVALF  199 (447)
T ss_dssp             STTCTHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHHHHHH
Confidence            999999887755544433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.7e-12  Score=118.51  Aligned_cols=163  Identities=15%  Similarity=0.020  Sum_probs=122.8

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ..++...+++.|+.+.++.+..+++....+..+...++.+++|+++|| ++|++......+...+..+.+......+   
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  339 (447)
T d1pw4a_         264 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNP---  339 (447)
T ss_dssp             HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred             hhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh-ccccccccccchhHHHHHHHHHHHHhcc---
Confidence            777788899999999999999999999999999999999999999999 7876644443333322222222111010   


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHHHHHHHH-HHHHHHHHHHhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWFFILTYA-STVISSAAFVYI  224 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~y~~~~i-G~~i~p~v~~~l  224 (296)
                                     ..+....++..++.+++.++..+....+..|.+|+ +.|+++.++.+...++ |..++|.+.+++
T Consensus       340 ---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~~g~~~~~~~~g~~  403 (447)
T d1pw4a_         340 ---------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-KAAGTAAGFTGLFGYLGGSVAASAIVGYT  403 (447)
T ss_dssp             ---------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           12345566667778888888888899999999994 4789999998887777 456789999999


Q ss_pred             hccccchhhHHHHHHHHHHHHHHH
Q 045564          225 EDNLSWRLGSGLNIAANLAGVVIF  248 (296)
Q Consensus       225 ~~~~gw~~~F~i~~~~~~~~~~~~  248 (296)
                      .+.+||+..|++.+++.+++.+++
T Consensus       404 ~~~~g~~~~~~~~~~~~~~~~~~~  427 (447)
T d1pw4a_         404 VDFFGWDGGFMVMIGGSILAVILL  427 (447)
T ss_dssp             HHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHH
Confidence            999999999988777666655543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.2e-13  Score=123.27  Aligned_cols=141  Identities=9%  Similarity=-0.004  Sum_probs=114.3

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCCCCccCCCCcCcCCCCch
Q 045564           83 HITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLRPQRCDIGLSLCKAPSKV  162 (296)
Q Consensus        83 g~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~~~~c~~~~~~~~~~~~~  162 (296)
                      +.+....+.......++..++..+.+++.|| +|||+++.++.++..++.+++.+..                       
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  310 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT-----------------------  310 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHTCC-----------------------
T ss_pred             ccchhhhcccccccccccccchhhhhhhhcc-cccccchhhhHHHHHHhhhcccccc-----------------------
Confidence            3445566677778888889999999999999 7999999999988888766655432                       


Q ss_pred             hhHHHHHHHHHHHHhhchhhhhhhhhhhccCCCccchhhHHHHH-HHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Q 045564          163 QFAVLYSGIALACLGLGGLRFTLATMGANQFEIPQHQGIFFNWF-FILTYASTVISSAAFVYIEDNLSWRLGSGLNIAAN  241 (296)
Q Consensus       163 ~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~r~~~f~~~-y~~~~iG~~i~p~v~~~l~~~~gw~~~F~i~~~~~  241 (296)
                      +.+.+++..++.+++.+...+...+++.|.+|++ .|++.+++. .++..+|..++|.+.|++.|.+|++..|++.+++.
T Consensus       311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~  389 (417)
T d1pv7a_         311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR-FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA  389 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG-GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence            2356667778889999999999999999999954 789999874 45677999999999999999999999999888766


Q ss_pred             HHHHHHH
Q 045564          242 LAGVVIF  248 (296)
Q Consensus       242 ~~~~~~~  248 (296)
                      ++..++.
T Consensus       390 ~~~~~~~  396 (417)
T d1pv7a_         390 LGFTLIS  396 (417)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6555543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=1.8e-12  Score=115.40  Aligned_cols=161  Identities=12%  Similarity=0.022  Sum_probs=103.2

Q ss_pred             hHHHhHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 045564           66 LGEGWVANLMVYMIQEFHITSINSALISNIVNGFVNLFPVLGAIIADSFLGSFQVIWISSFISLLGTILLDSTATFDSLR  145 (296)
Q Consensus        66 ~~y~~~~~l~~yl~~~lg~s~~~a~~i~~~~~~~~~~~~l~~G~laDr~iGR~~~i~i~~~l~~ig~~~la~~~~~p~~~  145 (296)
                      ........++.|+++++|+|.++.+++.+++.++..++.++.|+++|| +||||+++++.++..++.+++.+....+   
T Consensus        22 ~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~---   97 (417)
T d1pv7a_          22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGP---   97 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HTTCTHHHHHHHHHHHTHHHHHHHTHHH---
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHhhhhh---
Confidence            333345678889999999999999999999999999999999999999 7999999999888887776666543110   


Q ss_pred             CCccCCCCcCcCCCCchhhHHHHHHHHHHHHhhchhhhhhhhhhhccCC-CccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 045564          146 PQRCDIGLSLCKAPSKVQFAVLYSGIALACLGLGGLRFTLATMGANQFE-IPQHQGIFFNWFFILTYASTVISSAAFVYI  224 (296)
Q Consensus       146 ~~~c~~~~~~~~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~~~ad~f~-~~~~r~~~f~~~y~~~~iG~~i~p~v~~~l  224 (296)
                                      ......++.+.+.+.+.+...........+..+ +.+++....+........+..++|.+++++
T Consensus        98 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  161 (417)
T d1pv7a_          98 ----------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIM  161 (417)
T ss_dssp             ----------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------hHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccc
Confidence                            011112233333333333333322222222222 122333445555666778888999999988


Q ss_pred             hccccchhhHHHHHHHHHHHHHH
Q 045564          225 EDNLSWRLGSGLNIAANLAGVVI  247 (296)
Q Consensus       225 ~~~~gw~~~F~i~~~~~~~~~~~  247 (296)
                      .+. +|+..+.+......+..++
T Consensus       162 ~~~-~~~~~~~~~~~~~~~~~~~  183 (417)
T d1pv7a_         162 FTI-NNQFVFWLGSGCALILAVL  183 (417)
T ss_dssp             HHH-CHHHHHHHHHHHHHHHHHH
T ss_pred             ccc-cccccccchhhHHHHHHHH
Confidence            764 5555555555444333333