Citrus Sinensis ID: 045569

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
MMMTGDEHFLEETIIEILSKLPVKSLLRFRCICKSWCALFNKHNFISKHLNNDHNTRLIVHYMEKFDGPDESSYPLFLCSLFPDETLTNLSLQDLDNPVRGELVGPYNGIFCIFGNNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYDPNTQEMRDLGRKSFHFSVHIYRESLIRVKRGRKFSV
ccccccccccHHHHHHHHHcccHHHHHHcccccccHHHHcccHHHHHHHHHcccccccEEEEEEcccccccccccEEccccccccccccccccccccccccEEEEEEccEEEEEEcccEEEEEEcccccEEEccccccccccccccccEEEEEEEccccccEEEEEEEEEEcccccccccccEEEEEEcccccEEEEcccccccEEEcccccEEEEcccEEEEEEEccccEEEEEEEEccccEEEEEcccccccccccEEEEEcccEEEEEEcccccEEEEEEEccccEEEEEEEccccccccEEEEEEcccEEEEEEccEEEEEEcccccEEEEccccccEEEEEEEccEEcccccccccc
ccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHccHHccEEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEEEccEEEEEEcccccEEEEccccccEEEccccccccccccccEEEEEEEccccccccEEEEEEEEccccccccccccEEEEEEEEcccccEEEEcccccccccccccccEEEccEEEEEEEEcccccEEEEEEEccccccccccccccccccEEEEEEcHcEEEEEEEcccccEEEEEEEEccccHEEEEEccccccccEEEEEEccEEEEEEcccEEEEEEcccccEEEEcccccccEEEEEcccEEEEcccEEEEc
mmmtgdehFLEETIIEILSKLPVKSLLRFRCICKSWCALFNKHNFIskhlnndhNTRLIVHYMekfdgpdessyplflcslfpdetltnlslqdldnpvrgelvgpyngifcifgnnnritlwnratkesrvlpkcttvfpkytsifckctgfgldpmstdYKLVLIFTLWNEKLDLLYEFSHVAVYSLstnswrycdcfksnhyymdgafdSVYLDGVCYwlsefrdndhKVILSFHLGNevfeeiqepyipestptiLGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKqlslgplngvrtplgfwkkgaffvhstneqlllydpntqemrdlgrKSFHFSVHIYRESLIRVkrgrkfsv
mmmtgdehFLEETIIEILSKLPVKSLLRFRCICKSWCALFNKHNFISKHLNNDHNTRLIVHYMEKFDGPDESSYPLFLCSLFPDETLTNLSLQDLDNPVRGELVGPYNGIFCIFGNNNRITLWnratkesrvlpkcttvfpkYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYDPNTQEMRDLGRKSFHFSVHiyreslirvkrgrkfsv
MMMTGDEHFLEETIIEILSKLPVKSLLRFRCICKSWCALFNKHNFISKHLNNDHNTRLIVHYMEKFDGPDESSYPLFLCSLFPDETLTNLSLQDLDNPVRGELVGPYNGIFCIFGNNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYDPNTQEMRDLGRKSFHFSVHIYRESLIRVKRGRKFSV
*******HFLEETIIEILSKLPVKSLLRFRCICKSWCALFNKHNFISKHLNNDHNTRLIVHYMEKFDGPDESSYPLFLCSLFPDETLTNLSLQDLDNPVRGELVGPYNGIFCIFGNNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYDPNTQEMRDLGRKSFHFSVHIYRESLIRV********
******E****ETIIEILSKLPVKSLLRFRCICKSWCALFNKHNFISKHLNNDHNTRLIVHYMEKFDGPDESSYPLFLCSLFPDETLTNLSLQDLDNPVRGELVGPYNGIFCIFGNNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYDPNTQEMRDLGRKSFHFSVHIYRESLI**********
MMMTGDEHFLEETIIEILSKLPVKSLLRFRCICKSWCALFNKHNFISKHLNNDHNTRLIVHYMEKFDGPDESSYPLFLCSLFPDETLTNLSLQDLDNPVRGELVGPYNGIFCIFGNNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYDPNTQEMRDLGRKSFHFSVHIYRESLIRVKRGRKFSV
*****DEHFLEETIIEILSKLPVKSLLRFRCICKSWCALFNKHNFISKHLNNDHNTRLIVHYMEKFDGPDESSYPLFLCSLFPDETLTNLSLQDLDNPVRGELVGPYNGIFCIFGNNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYDPNTQEMRDLGRKSFHFSVHIYRESLIRVKRGRKFSV
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MMMTGDEHFLEETIIEILSKLPVKSLLRFRCICKSWCALFNKHNFISKHLNNDHNTRLIVHYMEKFDGPDESSYPLFLCSLFPDETLTNLSLQDLDNPVRGELVGPYNGIFCIFGNNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYDPNTQEMRDLGRKSFHFSVHIYRESLIRVKRGRKFSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query362 2.2.26 [Sep-21-2011]
Q8GXC7427 F-box/kelch-repeat protei yes no 0.900 0.763 0.278 2e-20
Q9LU24360 Putative F-box protein At no no 0.712 0.716 0.270 6e-14
Q7X7A9312 F-box protein At1g11270 O no no 0.638 0.740 0.274 7e-13
Q9SFC7417 F-box protein At3g07870 O no no 0.870 0.755 0.232 4e-12
Q9FT50390 Putative F-box protein At no no 0.629 0.584 0.260 5e-12
Q9LPW2416 Putative F-box/kelch-repe no no 0.729 0.634 0.264 1e-11
Q4PSN6410 F-box/WD-40 repeat-contai no no 0.676 0.597 0.279 3e-11
Q9SU30413 F-box protein CPR30 OS=Ar no no 0.853 0.748 0.248 4e-11
Q9LX89445 F-box protein At5g10340 O no no 0.892 0.725 0.226 5e-11
O49421411 F-box protein At4g19940 O no no 0.638 0.562 0.258 5e-11
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function desciption
 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 173/395 (43%), Gaps = 69/395 (17%)

Query: 12  ETIIEILSKLPVKSLLRFRCICKSWCALFNKHNFISKHLN--------NDHNTRLIV--H 61
           E I EIL +LP KS+ RFRC+ K +C L +   F   HL+           + +LIV  H
Sbjct: 39  EIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIVSSH 98

Query: 62  YMEKFD-----------GPDESSYPLFLCSLFPDETLTNLSLQDLDNPVRG--------- 101
            +   D              E +YPL        E + N     L +  R          
Sbjct: 99  NLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLNAKSY 158

Query: 102 -----ELVGPYNGIFCIFGNNNRITLWNRATKESRVLPKCTTVFPK---YTSIFCKCTGF 153
                E+VG  NG+ CI      + L+N  T +S+ LP+     PK   Y     +  GF
Sbjct: 159 RRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPE--NFRPKSVEYERDNFQTYGF 216

Query: 154 GLDPMSTDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSW-RYCDCFKSNHYYMDGAFD 212
           G D ++ DYKLV +     + LD        +VYSL  +SW R C+    N+ + DG++ 
Sbjct: 217 GFDGLTDDYKLVKLVATSEDILD-------ASVYSLKADSWRRICNL---NYEHNDGSYT 266

Query: 213 S-VYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEEIQEPYIPES-----TPTILGIYNHS 266
           S V+ +G  +W+     ++ +V+++F +  E F E+  P   E      +  ++G  N  
Sbjct: 267 SGVHFNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGR 326

Query: 267 LCLLLS-HNIENYYDIWVM----KYKCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQ 321
           LC++ S +++ +  DIWVM    + K W  ++ +  L     PL   K     +   +  
Sbjct: 327 LCVVNSCYDVHD--DIWVMSEYGEAKSW-SRIRINLLYRSMKPLCSTKNDEEVLLELDGD 383

Query: 322 LLLYDPNTQEMRDLG----RKSFHFSVHIYRESLI 352
           L+LY+  T    +LG    + S  F  + Y ESLI
Sbjct: 384 LVLYNFETNASSNLGICGVKLSDGFEANTYVESLI 418

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 Back     alignment and function description
>sp|Q7X7A9|FB4_ARATH F-box protein At1g11270 OS=Arabidopsis thaliana GN=At1g11270 PE=2 SV=1 Back     alignment and function description
>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 Back     alignment and function description
>sp|Q9FT50|FB202_ARATH Putative F-box protein At3g52320 OS=Arabidopsis thaliana GN=At3g52320 PE=4 SV=1 Back     alignment and function description
>sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2 Back     alignment and function description
>sp|Q4PSN6|FBW1_ARATH F-box/WD-40 repeat-containing protein 1 OS=Arabidopsis thaliana GN=FBW1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function description
>sp|Q9LX89|FB255_ARATH F-box protein At5g10340 OS=Arabidopsis thaliana GN=At5g10340 PE=2 SV=1 Back     alignment and function description
>sp|O49421|FB238_ARATH F-box protein At4g19940 OS=Arabidopsis thaliana GN=At4g19940 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
224119696367 predicted protein [Populus trichocarpa] 0.928 0.915 0.409 7e-60
224133722443 predicted protein [Populus trichocarpa] 0.950 0.776 0.353 7e-41
224119700272 predicted protein [Populus trichocarpa] 0.709 0.944 0.402 2e-39
224117590441 f-box family protein [Populus trichocarp 0.947 0.777 0.355 1e-38
345433636397 S-locus F-box brothers2-S6 [Pyrus pyrifo 0.958 0.874 0.328 4e-34
316996546400 hypothetical protein [Pyrus pyrifolia] 0.936 0.847 0.320 4e-34
316996533394 hypothetical protein [Pyrus pyrifolia] 0.933 0.857 0.309 2e-33
305644329413 S-locus F-box brothers [Malus x domestic 0.958 0.840 0.316 4e-33
301069156400 MdFBX9 [Malus x domestica] 0.936 0.847 0.315 6e-33
222159934413 F-box SLFB9-like2 protein [Malus x domes 0.930 0.815 0.321 8e-33
>gi|224119696|ref|XP_002318137.1| predicted protein [Populus trichocarpa] gi|222858810|gb|EEE96357.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  237 bits (604), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 145/354 (40%), Positives = 202/354 (57%), Gaps = 18/354 (5%)

Query: 11  EETIIEILSKLPVKSLLRFRCICKSWCALFNKHNFISKHLNNDHNTRLIVHYMEKFDGPD 70
           E+ IIEILS LPVK+LL+F+C+CKSW  +    NFIS HLNN +N     H +  F  P 
Sbjct: 11  EDVIIEILSLLPVKTLLQFKCVCKSWYGIITSSNFISLHLNNHYNNIKSGHLLAHFVCPQ 70

Query: 71  ESSYPLFLCSLFPDETLTNLSLQDLDNPVRGELVGPYNGIFCIFGNNNRIT-LWNRATKE 129
                  L  LF DE+LT+LS Q LD P+RG L GP NGIF +   ++  + LWN ATKE
Sbjct: 71  -------LLELFQDESLTDLSHQGLDPPIRGRLCGPCNGIFYVDSEDSSGSGLWNPATKE 123

Query: 130 SRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDL-LYEFSHVAVYS 188
            ++LP+           +    GFG DP++ DYK+V+I   +  +  L  +  S V VY+
Sbjct: 124 FKLLPEKIRNKSSLPLYYEDSYGFGFDPVTNDYKVVVIRESYTREYYLEKFPSSLVIVYT 183

Query: 189 LSTNSWRYCDCFKS--NHYYMDGAFDSVYLDGVCYWLSEFRDNDHKVILSFHLGNEVFEE 246
           L T+SWR   C+ S    Y + G +    +DGV YW +        VILSF++  + F+E
Sbjct: 184 LRTDSWR---CWGSLDQGYTLLGNYCYTNVDGVYYWQAG-HGVHMNVILSFNMATDAFQE 239

Query: 247 IQEP-YIPESTPTILGIYNHSLCLLLSHNIENYYDIWVMKYKCWIKQLSLGPLNGVRTPL 305
           IQEP Y   +  T L +Y+ S+     HN+E + DIWV+   CWI+Q    PL  +R P+
Sbjct: 240 IQEPDYDKPAYSTRLILYHDSIAFSTVHNVEKFLDIWVLNEGCWIRQFKSRPLLELRNPV 299

Query: 306 GFWKKGAFFVHSTNEQLLLYDPNTQEMRDLGRKSFH--FSVHIYRESLIRVKRG 357
             WK G   + S N+QL+LYD N QE++DL  K     + + +YRESL+ +K G
Sbjct: 300 AHWKNGNVILDSDNDQLMLYDTNKQELKDLRFKGTGVCYEILVYRESLVSIKDG 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224133722|ref|XP_002327664.1| predicted protein [Populus trichocarpa] gi|222836749|gb|EEE75142.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224119700|ref|XP_002318138.1| predicted protein [Populus trichocarpa] gi|222858811|gb|EEE96358.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117590|ref|XP_002331674.1| f-box family protein [Populus trichocarpa] gi|222874093|gb|EEF11224.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|345433636|dbj|BAK69451.1| S-locus F-box brothers2-S6 [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|316996546|dbj|BAJ52236.1| hypothetical protein [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|316996533|dbj|BAJ52224.1| hypothetical protein [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|305644329|gb|ADM53766.1| S-locus F-box brothers [Malus x domestica] Back     alignment and taxonomy information
>gi|301069156|dbj|BAJ11957.1| MdFBX9 [Malus x domestica] Back     alignment and taxonomy information
>gi|222159934|gb|ACM47305.1| F-box SLFB9-like2 protein [Malus x domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.651 0.552 0.303 2.9e-22
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.834 0.829 0.256 5.6e-15
TAIR|locus:2202099312 AT1G11270 "AT1G11270" [Arabido 0.654 0.759 0.275 8.6e-15
TAIR|locus:2100524390 AT3G52320 "AT3G52320" [Arabido 0.624 0.579 0.274 3.9e-14
TAIR|locus:2077452417 AT3G07870 "AT3G07870" [Arabido 0.765 0.664 0.258 1.1e-13
TAIR|locus:2090507388 AT3G17490 "AT3G17490" [Arabido 0.850 0.793 0.248 7.6e-13
TAIR|locus:2010316416 AT1G12870 "AT1G12870" [Arabido 0.779 0.677 0.276 2.7e-12
TAIR|locus:2142539445 AT5G10340 "AT5G10340" [Arabido 0.944 0.768 0.248 5.4e-12
TAIR|locus:2089473410 AT3G21410 "AT3G21410" [Arabido 0.679 0.6 0.290 5.7e-12
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.839 0.736 0.250 9.9e-12
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 224 (83.9 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
 Identities = 82/270 (30%), Positives = 131/270 (48%)

Query:   102 ELVGPYNGIFCIFGNNNRITLWNRATKESRVLPKCTTVFPK---YTSIFCKCTGFGLDPM 158
             E+VG  NG+ CI      + L+N  T +S+ LP+     PK   Y     +  GFG D +
Sbjct:   164 EIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPE--NFRPKSVEYERDNFQTYGFGFDGL 221

Query:   159 STDYKLVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDS-VYLD 217
             + DYKLV +     + LD        +VYSL  +SWR   C   N+ + DG++ S V+ +
Sbjct:   222 TDDYKLVKLVATSEDILD-------ASVYSLKADSWRRI-C-NLNYEHNDGSYTSGVHFN 272

Query:   218 GVCYWL-SEFRDNDHKVILSFHLGNEVFEEIQEPYIPES-----TPTILGIYNHSLCLLL 271
             G  +W+ +E R N  +V+++F +  E F E+  P   E      +  ++G  N  LC++ 
Sbjct:   273 GAIHWVFTESRHNQ-RVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVN 331

Query:   272 S-HNIENYYDIWVM-KY---KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHSTNEQLLLYD 326
             S +++ +  DIWVM +Y   K W  ++ +  L     PL   K     +   +  L+LY+
Sbjct:   332 SCYDVHD--DIWVMSEYGEAKSW-SRIRINLLYRSMKPLCSTKNDEEVLLELDGDLVLYN 388

Query:   327 PNTQEMRDLG----RKSFHFSVHIYRESLI 352
               T    +LG    + S  F  + Y ESLI
Sbjct:   389 FETNASSNLGICGVKLSDGFEANTYVESLI 418
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202099 AT1G11270 "AT1G11270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100524 AT3G52320 "AT3G52320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090507 AT3G17490 "AT3G17490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010316 AT1G12870 "AT1G12870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142539 AT5G10340 "AT5G10340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089473 AT3G21410 "AT3G21410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00120932
hypothetical protein (367 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 3e-21
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 1e-06
pfam0064648 pfam00646, F-box, F-box domain 3e-05
pfam1293747 pfam12937, F-box-like, F-box-like 0.001
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 90.9 bits (226), Expect = 3e-21
 Identities = 58/242 (23%), Positives = 95/242 (39%), Gaps = 27/242 (11%)

Query: 104 VGPYNGIFCIFGNNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYK 163
           V P +G+ C F    R+ +WN +T +SR LP   T   + ++        G DP+   YK
Sbjct: 1   VVPCDGLIC-FSYGKRLVVWNPSTGQSRWLP---TPKSRRSNKESDTYFLGYDPIEKQYK 56

Query: 164 LVLIFTLWNEKLDLLYEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWL 223
           ++                S   VY+L +NSWR  +C   +H         V ++GV Y+L
Sbjct: 57  VLCFS-----DRSGNRNQSEHQVYTLGSNSWRTIECSPPHHPLKS---RGVCINGVLYYL 108

Query: 224 SEFRDNDHK-VILSFHLGNEVFEE---IQEPYIPESTPTILGIYNHSLCLLLSHNIENYY 279
           +     +    I+SF + +E F+E   +            L  Y   L +L      N +
Sbjct: 109 AYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNF 168

Query: 280 DIWVMKYKC---WIKQLSL--GPLNGVRT---PLGFWKKGAFFVHSTNEQ---LLLYDPN 328
           D+WV+       W K  ++   PL  +       GF  KG   +   +E    +  Y+  
Sbjct: 169 DLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVG 228

Query: 329 TQ 330
             
Sbjct: 229 EN 230

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 362
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.72
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.68
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.59
PHA02713557 hypothetical protein; Provisional 99.34
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.2
PHA02713557 hypothetical protein; Provisional 99.13
PHA03098534 kelch-like protein; Provisional 99.12
PLN02153341 epithiospecifier protein 99.11
PHA02790480 Kelch-like protein; Provisional 99.09
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 99.04
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.02
PLN02193470 nitrile-specifier protein 99.0
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.95
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.92
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.91
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.88
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.79
PHA02790480 Kelch-like protein; Provisional 98.77
PHA03098534 kelch-like protein; Provisional 98.7
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.64
PLN02153341 epithiospecifier protein 98.62
PLN02193470 nitrile-specifier protein 98.53
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.52
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.24
KOG1230 521 consensus Protein containing repeated kelch motifs 98.16
KOG0281499 consensus Beta-TrCP (transducin repeats containing 97.87
KOG4693392 consensus Uncharacterized conserved protein, conta 97.74
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.66
KOG4693392 consensus Uncharacterized conserved protein, conta 97.54
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.77
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.68
KOG1230 521 consensus Protein containing repeated kelch motifs 96.63
KOG2997366 consensus F-box protein FBX9 [General function pre 96.43
PF1396450 Kelch_6: Kelch motif 95.22
COG3055381 Uncharacterized protein conserved in bacteria [Fun 94.7
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 94.62
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 93.68
KOG0310 487 consensus Conserved WD40 repeat-containing protein 93.42
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 92.96
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 92.86
PF1396450 Kelch_6: Kelch motif 92.83
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 92.71
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 92.45
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 92.4
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 92.23
smart00284255 OLF Olfactomedin-like domains. 91.98
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 89.19
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 88.69
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 88.55
smart0061247 Kelch Kelch domain. 88.53
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 87.43
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 87.21
KOG4341483 consensus F-box protein containing LRR [General fu 87.09
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 86.62
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 84.76
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 84.69
KOG2106 626 consensus Uncharacterized conserved protein, conta 84.42
PRK11138 394 outer membrane biogenesis protein BamB; Provisiona 82.96
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 81.08
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 80.22
PLN02772 398 guanylate kinase 80.15
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=2e-36  Score=260.61  Aligned_cols=215  Identities=25%  Similarity=0.411  Sum_probs=162.2

Q ss_pred             eeeeeeeEEEeecCceEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEEEEEeecccccccCcce
Q 045569          104 VGPYNGIFCIFGNNNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLIFTLWNEKLDLLYEFSH  183 (362)
Q Consensus       104 ~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~  183 (362)
                      ++|||||||+... ..++||||+||+++.||+++......   ....+|||||+.+++||||++.... ..    .....
T Consensus         1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~---~~~~~~~G~d~~~~~YKVv~~~~~~-~~----~~~~~   71 (230)
T TIGR01640         1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNK---ESDTYFLGYDPIEKQYKVLCFSDRS-GN----RNQSE   71 (230)
T ss_pred             CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCccccc---ccceEEEeecccCCcEEEEEEEeec-CC----CCCcc
Confidence            4799999998854 45999999999999999875421111   0125899999999999999997421 11    12457


Q ss_pred             EEEEECCCCCceecccCCCccccccCCcceEEECceEEEEeeccCCCc-cEEEEEEcCCceee-eecCCCCCCCC--CcE
Q 045569          184 VAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDNDH-KVILSFHLGNEVFE-EIQEPYIPEST--PTI  259 (362)
Q Consensus       184 ~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~-~~il~fD~~~e~~~-~i~~P~~~~~~--~~~  259 (362)
                      ++||++++++||.++..++...  . ...+|++||++||+........ ..|++||+++|+|+ .+++|......  ...
T Consensus        72 ~~Vys~~~~~Wr~~~~~~~~~~--~-~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~  148 (230)
T TIGR01640        72 HQVYTLGSNSWRTIECSPPHHP--L-KSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS  148 (230)
T ss_pred             EEEEEeCCCCccccccCCCCcc--c-cCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence            9999999999999885332211  1 1349999999999997542122 38999999999999 59999765421  267


Q ss_pred             EEEECCeEEEEEEcCCCCeEEEEEeeC---CeeEEEEEeCCCC--Cc---eeeEEEeeCCcEEEEecC--Ce-EEEEeCC
Q 045569          260 LGIYNHSLCLLLSHNIENYYDIWVMKY---KCWIKQLSLGPLN--GV---RTPLGFWKKGAFFVHSTN--EQ-LLLYDPN  328 (362)
Q Consensus       260 l~~~~g~L~l~~~~~~~~~~~IW~l~~---~~W~~~~~i~~~~--~~---~~~~~~~~~g~il~~~~~--~~-~~~yd~~  328 (362)
                      |++++|+||++........++||+|++   .+|+|+++|+...  .+   ..|+++.++|+|++....  .. +++||++
T Consensus       149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~  228 (230)
T TIGR01640       149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVG  228 (230)
T ss_pred             EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEecc
Confidence            999999999998864345699999997   6799999998421  22   347888889999998763  34 9999998


Q ss_pred             CC
Q 045569          329 TQ  330 (362)
Q Consensus       329 ~~  330 (362)
                      ++
T Consensus       229 ~~  230 (230)
T TIGR01640       229 EN  230 (230)
T ss_pred             CC
Confidence            75

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 3e-04
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 11  EETIIEILSKLPVKSLLRFRCICKSWCA------LFNKHNFISKHLNNDHNTRLIVHYME 64
           +E ++ I S L +  LL+   +CK W        L+   +   K+L+ D   RL+   + 
Sbjct: 14  DELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVI 73

Query: 65  KFDGPDESSYPLFLCSLFPDETLTNLSL 92
            F  P  S     L   F    + ++ L
Sbjct: 74  AFRCP-RSFMDQPLAEHFSPFRVQHMDL 100

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.4
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.37
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.36
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.35
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.34
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.27
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.24
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.23
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.2
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.18
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.16
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.16
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.14
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.1
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.03
2ovr_B 445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.99
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.97
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.95
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.82
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.72
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.47
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.19
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 98.06
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.04
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.64
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 97.46
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.48
3jrp_A 379 Fusion protein of protein transport protein SEC13 95.49
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 94.96
3jro_A 753 Fusion protein of protein transport protein SEC13 94.71
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 94.36
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 93.91
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 92.16
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 92.02
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 91.78
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 91.3
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 91.3
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 91.13
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 90.93
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 90.56
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 90.31
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 89.97
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 89.94
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 89.7
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 89.64
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 89.2
4e54_B435 DNA damage-binding protein 2; beta barrel, double 89.13
4g56_B357 MGC81050 protein; protein arginine methyltransfera 88.92
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 88.56
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 88.25
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 88.09
3dwl_C 377 Actin-related protein 2/3 complex subunit 1; prope 87.62
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 87.43
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 86.93
4e54_B435 DNA damage-binding protein 2; beta barrel, double 86.89
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 85.96
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 85.15
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 84.37
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 84.19
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 84.07
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 83.31
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 83.25
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 82.85
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 82.83
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 82.72
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 82.69
3hrp_A 409 Uncharacterized protein; NP_812590.1, structural g 82.64
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 82.51
2dg1_A 333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 82.07
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 82.03
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 81.99
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 81.96
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 81.55
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 81.48
3v9f_A 781 Two-component system sensor histidine kinase/RESP 81.03
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 80.97
3v65_B386 Low-density lipoprotein receptor-related protein; 80.26
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
Probab=99.40  E-value=1.7e-10  Score=102.39  Aligned_cols=220  Identities=12%  Similarity=0.045  Sum_probs=140.6

Q ss_pred             cCCCCCccceEeeeeeeeEEEe-ec----CceEEEEeCCCcccccCCCCCcCCCCcccceeeeeeeeecCCCCCeEEEEE
Q 045569           93 QDLDNPVRGELVGPYNGIFCIF-GN----NNRITLWNRATKESRVLPKCTTVFPKYTSIFCKCTGFGLDPMSTDYKLVLI  167 (362)
Q Consensus        93 ~~~~~p~~~~~~~s~~GLl~~~-~~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~  167 (362)
                      ..++.+......+..+|.|++. +.    ...+.++||.|++|..+|+.+.+....       ....++     -+++.+
T Consensus        40 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-------~~~~~~-----~~iyv~  107 (306)
T 3ii7_A           40 RCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-------AACAAE-----GKIYTS  107 (306)
T ss_dssp             CCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-------EEEEET-----TEEEEE
T ss_pred             CCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-------eEEEEC-----CEEEEE
Confidence            3344444444455567766655 32    346899999999999998876533221       111222     245555


Q ss_pred             EEEeecccccccCcceEEEEECCCCCceecccCCCccccccCCcceEEECceEEEEeeccCCC-----ccEEEEEEcCCc
Q 045569          168 FTLWNEKLDLLYEFSHVAVYSLSTNSWRYCDCFKSNHYYMDGAFDSVYLDGVCYWLSEFRDND-----HKVILSFHLGNE  242 (362)
Q Consensus       168 ~~~~~~~~~~~~~~~~~eVyss~~~~W~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~il~fD~~~e  242 (362)
                      +. ...   .......+++|+..+++|+.+...+.+..    ....+.++|.+|.+.......     ...+.+||+.++
T Consensus       108 GG-~~~---~~~~~~~~~~~d~~~~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          108 GG-SEV---GNSALYLFECYDTRTESWHTKPSMLTQRC----SHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             CC-BBT---TBSCCCCEEEEETTTTEEEEECCCSSCCB----SCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CC-CCC---CCcEeeeEEEEeCCCCceEeCCCCcCCcc----eeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            32 110   11223579999999999999876654332    256788999999998643221     356999999999


Q ss_pred             eeeeec-CCCCCCCCCcEEEEECCeEEEEEEcCCC-CeEEEEEeeC--CeeEEEEEeCCCCCceeeEEEeeCCcEEEEec
Q 045569          243 VFEEIQ-EPYIPESTPTILGIYNHSLCLLLSHNIE-NYYDIWVMKY--KCWIKQLSLGPLNGVRTPLGFWKKGAFFVHST  318 (362)
Q Consensus       243 ~~~~i~-~P~~~~~~~~~l~~~~g~L~l~~~~~~~-~~~~IW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~g~il~~~~  318 (362)
                      +|+.++ +|.....  ..++..+|+|++++..... ..-++|+++-  ..|+.+..++.. ......+ .-+++|++..+
T Consensus       180 ~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~-~~~~~i~v~GG  255 (306)
T 3ii7_A          180 TWTELCPMIEARKN--HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK-GVTVKCA-AVGSIVYVLAG  255 (306)
T ss_dssp             EEEEECCCSSCCBS--CEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC-BSCCEEE-EETTEEEEEEC
T ss_pred             eEEECCCccchhhc--ceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC-ccceeEE-EECCEEEEEeC
Confidence            999884 4543322  4677789999998764221 1224666654  889987654432 1222223 33678888764


Q ss_pred             ------CCeEEEEeCCCCcEEEee
Q 045569          319 ------NEQLLLYDPNTQEMRDLG  336 (362)
Q Consensus       319 ------~~~~~~yd~~~~~~~~v~  336 (362)
                            ...+..||+++++|+.+.
T Consensus       256 ~~~~~~~~~~~~yd~~~~~W~~~~  279 (306)
T 3ii7_A          256 FQGVGRLGHILEYNTETDKWVANS  279 (306)
T ss_dssp             BCSSSBCCEEEEEETTTTEEEEEE
T ss_pred             cCCCeeeeeEEEEcCCCCeEEeCC
Confidence                  256999999999999986
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 362
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 7e-06
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 0.001
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 0.001
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 0.003
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (95), Expect = 7e-06
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 11 EETIIEILSKLPVKSLLRFRCICKSWCALFN 41
          +E ++ I S L +  LL+   +CK W  L +
Sbjct: 6  DELLLGIFSCLCLPELLKVSGVCKRWYRLAS 36
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.36
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.85
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.75
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.7
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.64
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.34
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 98.03
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.92
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 95.65
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 94.9
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 87.92
d2ghsa1 295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 84.51
d1kv9a2 560 Quinoprotein alcohol dehydrogenase, N-terminal dom 82.51
d2dg1a1 319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 82.32
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 81.27
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-13  Score=81.10  Aligned_cols=40  Identities=25%  Similarity=0.502  Sum_probs=37.7

Q ss_pred             CCcchHHHHHHHHccCCccccccccccccchhhhhCChHH
Q 045569            6 DEHFLEETIIEILSKLPVKSLLRFRCICKSWCALFNKHNF   45 (362)
Q Consensus         6 ~~~LP~Dll~eIL~rLP~ksl~r~r~VcK~W~~li~~~~F   45 (362)
                      ++.||+|++.+||+.||+++++|+++|||+|+.+++++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            5789999999999999999999999999999999998864
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure