Citrus Sinensis ID: 045580

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760----
Protein Sequence
LRCEEIHSRINFRLCVQIIEHVWSPIIKKPQELWHKFFPKGSITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTTVLEPPETPSDGAEEDESAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYFIDAYIDLCYYWFYKYVFNR
Secondary Structure (PSIPRED)
cccHHHHHcccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccEEccHHHHcccccccEEEccccccccccccccccccccccEEEccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEccccccEEEcccccccccccEEEccccccEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEcccccccccccEEEccccEEEEcccHHHHccccccEEEcccccccccccHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHHHHHHcccccccccccccccccccHHHHHHcccccHHccccccccccccEEEEEEEccEEEEccccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEccccHHHHHHHHHHHccEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEEEccccccccccHHHcccHHHHHHHHHcccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccEEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEEcccccccccccccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHcccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccHHHHHHccccccccccccccccEEHHHccccccccccccccccEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHccHHHccHHHcccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
LRCEEIHSRINFRLCVQIIEHVwspiikkpqelwhkffpkgsitdfsvedscrktsgvplTVFVNTGICELKKLVELdlsknnlyghlspclsnlthikvldlssnqltgNLQSVIANIKSLeylslddnnfegsfsfnslknhsklqVFKLSNSLVkieteefpglpeyqlkalnlrncslhalpsfLLHQLDLRFIDLShnklqgtfpswllqnntkldTLYLLNNslsgnfqlpsskhdllridishnkfsgqlpgnmgkilPELLslnlsengfevripssmseMKRLesldlssnnfsgelprqflsgcfslsflslsdnhlqgevvfpnstnlCWLYlnnnhfsgkiQDGLSKATSLLEldlsnnmlygqiphwfgnlsglqfldisenqlsgsvpssfnlSSLRRLYMHMNAfngsipgalrrsssltvldlrdnqfsgsipiwiNEFSYLGILLLRgnqlkgnipnqlchLSLLNIldlsynkfngpipvcfaNVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTgldfscneltgdipseigslSEIRALNLshnflsgsipqslsnlkmiesldlshndlsgqippqltelnfLSNFnvsynhlsgptpnagqfanfdeqnyggnsglcgprinkscttvleppetpsdgaeedesAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYFIDAYIDLCYYWFYKYVFNR
Flexible Loop (DISEMBL)
LRCEEIHSRINFRLCVQIIEHVWSPIIKKPQELWHKFFPKGSITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTTVLEPPETPSDGAEEDESAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYFIDAYIDLCYYWFYKYVFNR
Low Complexity Region (SEG)
LRCEEIHSRINFRLCVQIIEHVWSPIIKKPQELWHKFFPKGSITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPellslnlsenGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQflsgcfslsflslsDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTTVLEPPETPSDGAEEDESAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYFIDAYIDLCYYWFYKYVFNR
Disordered region (IsUnstruct)
*****IHSRINFRLCVQIIEHVWSPIIKKPQELWHKFFPKGSITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNL*********************************PRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQL******SFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSI********MI*************IPPQLTELNFLSNFNVSYNHLS********FANFD**NYGGNSGLCGPRIN***********************VDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYFIDAYIDLCYYWFYKYVF**
Disordered Region (DISOPRED)
****EIHSRINFRLCVQIIEHVWSPIIKKPQELWHKFFPKGSITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLG*****FVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRI***************************VAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYFIDAYIDLCYYWFYKYVFNR
Disordered Region (DISEMBL)
LRCEEIHSRINFRLCVQIIEHVWSPIIKKPQELWHKFFPKGSITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTTVLE************ESAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYFIDAYIDLCYYWFYKYVFNR
Disordered Region (DISPRO)
LRCEEIHSRINFRLCVQIIEHVWSPIIKKPQELWHKFFPKGSITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSC******************SAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYFIDAYIDLCYYWFYKYVFNR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LRCEEIHSRINFRLCVQIIEHVWSPIIKKPQELWHKFFPKGSITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTTVLEPPETPSDGAEEDESAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYFIDAYIDLCYYWFYKYVFNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	764	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.844	0.761	0.312	1e-65
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.808	0.530	0.299	5e-61
Q9LJF3	1164	Receptor-like protein kin	no	no	0.831	0.545	0.325	1e-60
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.718	0.537	0.325	7e-60
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.806	0.516	0.305	2e-58
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.772	0.488	0.303	4e-58
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.778	0.492	0.307	3e-57
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.803	0.490	0.301	2e-56
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.781	0.542	0.324	6e-56
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.787	0.546	0.284	6e-56

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  251 bits (642), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 229/733 (31%), Positives = 357/733 (48%), Gaps = 88/733 (12%)

Query: 64  VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 123
            N+ + +L+ L  LDL+  NLYG +   L NL+H+ +++L  N+  G + + I N+  L 
Sbjct: 102 TNSSLFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLR 161

Query: 124 YLSLDDNNFEGSFSFNSLKNHSKLQVFKL-SNSLVKIETEEFPGLPEYQLKALNLR-NCS 181
           +L L +N   G    +SL N S+L   +L SN LV    +    L   QL+ L+L  N  
Sbjct: 162 HLILANNVLTGEIP-SSLGNLSRLVNLELFSNRLVGKIPDSIGDLK--QLRNLSLASNNL 218

Query: 182 LHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGN-------- 233
           +  +PS L +  +L  + L+HN+L G  P+ +  N  +L  +   NNSLSGN        
Sbjct: 219 IGEIPSSLGNLSNLVHLVLTHNQLVGEVPASI-GNLIELRVMSFENNSLSGNIPISFANL 277

Query: 234 -----FQLPSSK------------HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSEN 276
                F L S+             H+L   D+S+N FSG  P ++  ++P L S+ L EN
Sbjct: 278 TKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSL-LLIPSLESIYLQEN 336

Query: 277 GF-------------------------EVRIPSSMSEMKRLESLDLSSNNFSGELPRQFL 311
            F                            IP S+S +  LE LD+S NNF+G +P   +
Sbjct: 337 QFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPT-I 395

Query: 312 SGCFSLSFLSLSDNHLQGEVVFPNST-NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSN 370
           S   +L  L LS N+L+GEV  P     L  + L++N FS   ++   +   + ELDL++
Sbjct: 396 SKLVNLLHLDLSKNNLEGEV--PACLWRLNTMVLSHNSFS-SFENTSQEEALIEELDLNS 452

Query: 371 NMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLS-SLRRLYMHMNAFNGSIPGAL 428
           N   G IP+    LS L FLD+S N  SGS+PS   N S S++ L +  N F+G++P   
Sbjct: 453 NSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIF 512

Query: 429 RRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLS 488
            +++ L  LD+  NQ  G  P  +     L ++ +  N++K   P+ L  L  L++L+L 
Sbjct: 513 SKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLR 572

Query: 489 YNKFNGPIPVCFANVTLWTL-------GQAAGS-----FVLWETTQRISTEFEAYYNSTL 536
            NKF GP+    A++   +L          +G+     F  W+    ++ E + Y     
Sbjct: 573 SNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFW 632

Query: 537 ELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEI 596
             ++  +       +G++   ++    ++         +DFS N++ G+IP  +G L E+
Sbjct: 633 RYADSYYHEMEMVNKGVDMSFERIRRDFRA--------IDFSGNKINGNIPESLGYLKEL 684

Query: 597 RALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSG 656
           R LNLS N  +  IP+ L+NL  +E+LD+S N LSGQIP  L  L+FLS  N S+N L G
Sbjct: 685 RVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQG 744

Query: 657 PTPNAGQFANFDEQNYGGNSGLCGPRINKSCTTVLEPP-ETPSDGAEEDESAVDMVAFYW 715
           P P   QF      ++  N GL G       T  L P  + P D +E +E+  + VA   
Sbjct: 745 PVPRGTQFQRQKCSSFLDNPGLYGLEDICRDTGALNPTSQLPEDLSEAEENMFNWVA--- 801

Query: 716 SFVASSVTVILGL 728
           + +A    V+ GL
Sbjct: 802 AAIAYGPGVLCGL 814

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  236 bits (602), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 214/715 (29%), Positives = 336/715 (46%), Gaps = 97/715 (13%)

Query: 74  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNL-QSVIANI-KSLEYLSLDDNN 131
           LV +++S N L G L    S+L  +  +DLS N L+  + +S I++   SL+YL L  NN
Sbjct: 153 LVSVNISNNKLVGKLGFAPSSLQSLTTVDLSYNILSDKIPESFISDFPASLKYLDLTHNN 212

Query: 132 FEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLH 191
             G FS  S      L  F LS +   +  ++FP         + L NC           
Sbjct: 213 LSGDFSDLSFGICGNLTFFSLSQN--NLSGDKFP---------ITLPNCKF--------- 252

Query: 192 QLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHN 251
              L  +++S N L G  P                N    G+FQ      +L ++ ++HN
Sbjct: 253 ---LETLNISRNNLAGKIP----------------NGEYWGSFQ------NLKQLSLAHN 287

Query: 252 KFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFL 311
           + SG++P  +  +   L+ L+LS N F   +PS  +    L++L+L +N  SG+     +
Sbjct: 288 RLSGEIPPELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSGDFLNTVV 347

Query: 312 SGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDG---LSKATSLLEL 366
           S    +++L ++ N++ G V     N +NL  L L++N F+G +  G   L  +  L ++
Sbjct: 348 SKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKI 407

Query: 367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF----NLS-------------- 408
            ++NN L G +P   G    L+ +D+S N+L+G +P       NLS              
Sbjct: 408 LIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIP 467

Query: 409 --------SLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGI 460
                   +L  L ++ N   GSIP ++ R +++  + L  N+ +G IP  I   S L I
Sbjct: 468 EGVCVKGGNLETLILNNNLLTGSIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAI 527

Query: 461 LLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFAN-VTLWTLGQAAG---SFV 516
           L L  N L GN+P QL +   L  LDL+ N   G +P   A+   L   G  +G   +FV
Sbjct: 528 LQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAFV 587

Query: 517 LWE--TTQRIS---TEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNY 571
             E  T  R +    EFE      LE   + H   A+  R    MT   + S  G ++ +
Sbjct: 588 RNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPAT--RIYSGMTMYTF-SANGSMIYF 644

Query: 572 MTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS 631
               D S N ++G IP   G++  ++ LNL HN ++G+IP S   LK I  LDLSHN+L 
Sbjct: 645 ----DISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDLSHNNLQ 700

Query: 632 GQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTTVL 691
           G +P  L  L+FLS+ +VS N+L+GP P  GQ   F    Y  NSGLCG  + + C +  
Sbjct: 701 GYLPGSLGSLSFLSDLDVSNNNLTGPIPFGGQLTTFPVSRYANNSGLCGVPL-RPCGSAP 759

Query: 692 EPPETPSDGAEEDESAVDMVA-FYWSFVASSVTVILGLFAILWVNSYWRRLWFYF 745
             P T    A++   A  ++A   +SF+   V +++ L+ +  V    ++   Y 
Sbjct: 760 RRPITSRIHAKKQTVATAVIAGIAFSFMC-FVMLVMALYRVRKVQKKEQKREKYI 813

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  235 bits (599), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 227/698 (32%), Positives = 329/698 (47%), Gaps = 63/698 (9%)

Query: 74  LVELDLSKNNLYGHL--SPCLSNLTHIKVLDLSSNQLTGNL-QSVIANI-KSLEYLSLDD 129
           LV ++ S N L G L  SP  SN   I  +DLS+N+ +  + ++ IA+   SL++L L  
Sbjct: 152 LVSVNFSHNKLAGKLKSSPSASN-KRITTVDLSNNRFSDEIPETFIADFPNSLKHLDLSG 210

Query: 130 NNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFP-GLPEYQL-KALNL-RNCSLHALP 186
           NN  G FS  S      L VF LS +   I  + FP  L   +L + LNL RN  +  +P
Sbjct: 211 NNVTGDFSRLSFGLCENLTVFSLSQN--SISGDRFPVSLSNCKLLETLNLSRNSLIGKIP 268

Query: 187 S--FLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLP---SSKH 241
              +  +  +LR + L+HN   G  P  L      L+ L L  NSL+G  QLP   +S  
Sbjct: 269 GDDYWGNFQNLRQLSLAHNLYSGEIPPELSLLCRTLEVLDLSGNSLTG--QLPQSFTSCG 326

Query: 242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNN 301
            L  +++ +NK SG     +   L  + +L L  N     +P S++    L  LDLSSN 
Sbjct: 327 SLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISGSVPISLTNCSNLRVLDLSSNE 386

Query: 302 FSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKAT 361
           F+GE+P  F S                      +S+ L  L + NN+ SG +   L K  
Sbjct: 387 FTGEVPSGFCS--------------------LQSSSVLEKLLIANNYLSGTVPVELGKCK 426

Query: 362 SLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNL--SSLRRLYMHMNA 419
           SL  +DLS N L G IP     L  L  L +  N L+G +P S  +   +L  L ++ N 
Sbjct: 427 SLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNNL 486

Query: 420 FNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHL 479
             GS+P ++ + +++  + L  N  +G IP+ I +   L IL L  N L GNIP++L + 
Sbjct: 487 LTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNC 546

Query: 480 SLLNILDLSYNKFNGPIPVCFAN-VTLWTLGQAAG---SFVLWE--TTQRIS---TEFEA 530
             L  LDL+ N   G +P   A+   L   G  +G   +FV  E  T  R +    EFE 
Sbjct: 547 KNLIWLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEG 606

Query: 531 YYNSTLELSEVKHF---YKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIP 587
                LE     HF   +     R    MT   + S        M  LD S N ++G IP
Sbjct: 607 IRAERLE-----HFPMVHSCPKTRIYSGMTMYMFSSN-----GSMIYLDLSYNAVSGSIP 656

Query: 588 SEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNF 647
              G++  ++ LNL HN L+G+IP S   LK I  LDLSHNDL G +P  L  L+FLS+ 
Sbjct: 657 LGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDL 716

Query: 648 NVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTTVLEPPETPSDGAEEDESA 707
           +VS N+L+GP P  GQ   F    Y  NSGLCG  +   C++   P  + +   ++  + 
Sbjct: 717 DVSNNNLTGPIPFGGQLTTFPLTRYANNSGLCGVPL-PPCSSGSRPTRSHAHPKKQSIAT 775

Query: 708 VDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYF 745
                  +SF+   V +I+ L+    V    ++   Y 
Sbjct: 776 GMSAGIVFSFMC-IVMLIMALYRARKVQKKEKQREKYI 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  232 bits (592), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 204/626 (32%), Positives = 306/626 (48%), Gaps = 77/626 (12%)

Query: 68  ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 127
           + E  ++VEL+L +  L G LS  ++ L  +KVL+L+ N L+G++ + + N+ +LE L L
Sbjct: 82  VNESGRVVELELGRRKLSGKLSESVAKLDQLKVLNLTHNSLSGSIAASLLNLSNLEVLDL 141

Query: 128 DDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHAL-P 186
             N+F G F                  SL+ + +          L+ LN+   S H L P
Sbjct: 142 SSNDFSGLFP-----------------SLINLPS----------LRVLNVYENSFHGLIP 174

Query: 187 SFLLHQL-DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGN-----FQLPSSK 240
           + L + L  +R IDL+ N   G+ P  +  N + ++ L L +N+LSG+     FQL    
Sbjct: 175 ASLCNNLPRIREIDLAMNYFDGSIPVGI-GNCSSVEYLGLASNNLSGSIPQELFQL---- 229

Query: 241 HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSN 300
            +L  + + +N+ SG L   +GK L  L  L++S N F  +IP    E+ +L      SN
Sbjct: 230 SNLSVLALQNNRLSGALSSKLGK-LSNLGRLDISSNKFSGKIPDVFLELNKLWYFSAQSN 288

Query: 301 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS--TNLCWLYLNNNHFSGKIQDGLS 358
            F+GE+PR  LS   S+S LSL +N L G++    S  TNL  L L +N FSG I   L 
Sbjct: 289 LFNGEMPRS-LSNSRSISLLSLRNNTLSGQIYLNCSAMTNLTSLDLASNSFSGSIPSNLP 347

Query: 359 KATSLLELDLSNNMLYGQIPHWFGN---LSGLQFLDISENQLSGSVPSSFNLSSLRRLYM 415
               L  ++ +      QIP  F N   L+ L F + S   +S ++    +  +L+ L +
Sbjct: 348 NCLRLKTINFAKIKFIAQIPESFKNFQSLTSLSFSNSSIQNISSALEILQHCQNLKTLVL 407

Query: 416 HMNAFNGSIPGALR-RSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPN 474
            +N     +P     +  +L VL +   Q  G++P W++    L +L L  NQL G IP 
Sbjct: 408 TLNFQKEELPSVPSLQFKNLKVLIIASCQLRGTVPQWLSNSPSLQLLDLSWNQLSGTIPP 467

Query: 475 QLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNS 534
            L  L+ L  LDLS N F G IP    ++      + A         +  S +F  +   
Sbjct: 468 WLGSLNSLFYLDLSNNTFIGEIPHSLTSLQSLVSKENA--------VEEPSPDFPFFKK- 518

Query: 535 TLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLS 594
                      K +   G+++     +             +D S N L G I  E G L 
Sbjct: 519 -----------KNTNAGGLQYNQPSSFPPM----------IDLSYNSLNGSIWPEFGDLR 557

Query: 595 EIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHL 654
           ++  LNL +N LSG+IP +LS +  +E LDLSHN+LSG IPP L +L+FLS F+V+YN L
Sbjct: 558 QLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKL 617

Query: 655 SGPTPNAGQFANFDEQNYGGNSGLCG 680
           SGP P   QF  F   ++ GN GLCG
Sbjct: 618 SGPIPTGVQFQTFPNSSFEGNQGLCG 643

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  228 bits (580), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 225/737 (30%), Positives = 326/737 (44%), Gaps = 121/737 (16%)

Query: 68  ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 127
           I  LK L EL L+ N   G + P + NL H++ LDLS N LTG L  +++ +  L YL L
Sbjct: 85  ISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDL 144

Query: 128 DDNNFEGSF----------------SFNSLKNHSKLQVFKLSN-SLVKIETEEFPGLPEY 170
            DN+F GS                 S NSL      ++ KLSN S + +    F G    
Sbjct: 145 SDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPS 204

Query: 171 QLKALNL------RNCSLHA-LPSFLLHQLDLRFIDLSHNKLQGTFPSWL---------- 213
           ++  ++L       +C  +  LP  +     L  +DLS+N L+ + P             
Sbjct: 205 EIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILN 264

Query: 214 -------------LQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGN 260
                        L N   L +L L  NSLSG   L  S+  LL      N+ SG LP  
Sbjct: 265 LVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEIPLLTFSAERNQLSGSLPSW 324

Query: 261 MGK--ILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLS 318
           MGK  +L  LL   L+ N F   IP  + +   L+ L L+SN  SG +PR+ L G  SL 
Sbjct: 325 MGKWKVLDSLL---LANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRE-LCGSGSLE 380

Query: 319 FLSLSDNHLQG--EVVFPNSTNLCWLYLNNNH-----------------------FSGKI 353
            + LS N L G  E VF   ++L  L L NN                        F+G+I
Sbjct: 381 AIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKLPLMALDLDSNNFTGEI 440

Query: 354 QDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRR 412
              L K+T+L+E   S N L G +P   GN + L+ L +S+NQL+G +P     L+SL  
Sbjct: 441 PKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSV 500

Query: 413 LYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNI 472
           L ++ N F G IP  L   +SLT LDL  N   G IP  I   + L  L+L  N L G+I
Sbjct: 501 LNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSI 560

Query: 473 PN---------QLCHLSLLN---ILDLSYNKFNGPIPV----CFANVTL----------- 505
           P+         ++  LS L    I DLSYN+ +GPIP     C   V +           
Sbjct: 561 PSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEI 620

Query: 506 -WTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVK--------HFYKASGQRGIEFM 556
             +L +     +L  +   ++        ++L+L  +         H  ++ G  G    
Sbjct: 621 PASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVK 680

Query: 557 TKKRYESYKGDI------LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSI 610
                    G +      L  +T +D S N L+G++ SE+ ++ ++  L +  N  +G I
Sbjct: 681 LNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEI 740

Query: 611 PQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQ 670
           P  L NL  +E LD+S N LSG+IP ++  L  L   N++ N+L G  P+ G   +  + 
Sbjct: 741 PSELGNLTQLEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVPSDGVCQDPSKA 800

Query: 671 NYGGNSGLCGPRINKSC 687
              GN  LCG  +   C
Sbjct: 801 LLSGNKELCGRVVGSDC 817

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  226 bits (577), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 224/737 (30%), Positives = 323/737 (43%), Gaps = 147/737 (19%)

Query: 77  LDLSKNNLYG-HLSPCLSNLTHIKV--LDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 133
           LDLS NN+ G +L P +S++  +++    L  N+L G++  +  + K+L YL L  NNF 
Sbjct: 190 LDLSYNNISGFNLFPWVSSMGFVELEFFSLKGNKLAGSIPEL--DFKNLSYLDLSANNF- 246

Query: 134 GSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL 193
            S  F S K+ S LQ   LS       + +F     Y     +L +C             
Sbjct: 247 -STVFPSFKDCSNLQHLDLS-------SNKF-----YGDIGSSLSSCG------------ 281

Query: 194 DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF--QLPSSKHDLLRIDISHN 251
            L F++L++N+  G  P      +  L  LYL  N   G +  QL      ++ +D+S+N
Sbjct: 282 KLSFLNLTNNQFVGLVPKL---PSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYN 338

Query: 252 KFSGQLPGNMGKILPELLSLNLSENGFEVRIP-SSMSEMKRLESLDLSSNNFSGELPRQF 310
            FSG +P ++G+    L  +++S N F  ++P  ++S++  ++++ LS N F G LP  F
Sbjct: 339 NFSGMVPESLGEC-SSLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSF 397

Query: 311 LSGCFSLSFLSLSDNHLQGEVVFPNS------TNLCWLYLNNNHFSGKIQDGLSKATSLL 364
            S    L  L +S N+L G  V P+        NL  LYL NN F G I D LS  + L+
Sbjct: 398 -SNLLKLETLDMSSNNLTG--VIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLV 454

Query: 365 ELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFN-LSSLRRLYMHMNAFNGS 423
            LDLS N L G IP   G+LS L+ L +  NQLSG +P     L +L  L +  N   G 
Sbjct: 455 SLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGP 514

Query: 424 IPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLN 483
           IP +L   + L  + L +NQ SG IP  +   S L IL L  N + GNIP +L +   L 
Sbjct: 515 IPASLSNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLI 574

Query: 484 ILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKH 543
            LDL+ N  NG IP                                              
Sbjct: 575 WLDLNTNFLNGSIP--------------------------------------------PP 590

Query: 544 FYKASGQRGIEFMTKKRYESYK----------GDILNY---------------------- 571
            +K SG   +  +T KRY   K          G++L +                      
Sbjct: 591 LFKQSGNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRV 650

Query: 572 --------------MTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNL 617
                         M  LD S N+L G IP E+G++  +  LNL HN LSG IPQ L  L
Sbjct: 651 YRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGL 710

Query: 618 KMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSG 677
           K +  LDLS+N  +G IP  LT L  L   ++S N+LSG  P +  F  F +  +  NS 
Sbjct: 711 KNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANNS- 769

Query: 678 LCGPRINKSCTTVLEPPETPSDGAEEDESAVDMVAFYWSFVAS---SVTVILGLFAILWV 734
           LCG  +   C++        SD  +  +S     +   S       S+  I GL  +   
Sbjct: 770 LCGYPLPIPCSS-----GPKSDANQHQKSHRRQASLAGSVAMGLLFSLFCIFGLIIVAIE 824

Query: 735 NSYWRRLWFYFIDAYID 751
               RR     ++AY+D
Sbjct: 825 TKKRRRKKEAALEAYMD 841

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  224 bits (570), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 225/732 (30%), Positives = 318/732 (43%), Gaps = 137/732 (18%)

Query: 77  LDLSKNNLYG-HLSPCLSNLTHIKV--LDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 133
           LDLS NN+ G +L P +S++  +++    +  N+L G++  +  + K+L YL L  NNF 
Sbjct: 190 LDLSYNNISGFNLFPWVSSMGFVELEFFSIKGNKLAGSIPEL--DFKNLSYLDLSANNF- 246

Query: 134 GSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEY-QLKALNLRNCSLHALPSFLLHQ 192
            S  F S K+ S LQ   LS++  K   +    L    +L  LNL N     L   L  +
Sbjct: 247 -STVFPSFKDCSNLQHLDLSSN--KFYGDIGSSLSSCGKLSFLNLTNNQFVGLVPKLPSE 303

Query: 193 LDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD---LLRIDIS 249
             L+++ L  N  QG +P+ L      +  L L  N+ SG   +P S  +   L  +DIS
Sbjct: 304 -SLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSG--MVPESLGECSSLELVDIS 360

Query: 250 HNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQ 309
           +N FSG+LP +    L  + ++ LS N F   +P S S + +LE+LD+SSNN +G +P  
Sbjct: 361 NNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPSG 420

Query: 310 FLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLS 369
                 +                     NL  LYL NN F G I D LS  + L+ LDLS
Sbjct: 421 ICKDPMN---------------------NLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLS 459

Query: 370 NNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFN-LSSLRRLYMHMNAFNGSIPGAL 428
            N L G IP   G+LS L+ L +  NQLSG +P     L +L  L +  N   G IP +L
Sbjct: 460 FNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASL 519

Query: 429 RRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLS 488
              + L  + L +NQ SG IP  +   S L IL L  N + GNIP +L +   L  LDL+
Sbjct: 520 SNCTKLNWISLSNNQLSGEIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLN 579

Query: 489 YNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKAS 548
            N  NG IP                                               +K S
Sbjct: 580 TNFLNGSIP--------------------------------------------PPLFKQS 595

Query: 549 GQRGIEFMTKKRYESYK----------GDILNY--------------------------- 571
           G   +  +T KRY   K          G++L +                           
Sbjct: 596 GNIAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGIT 655

Query: 572 ---------MTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIES 622
                    M  LD S N+L G IP E+G++  +  LNL HN LSG IPQ L  LK +  
Sbjct: 656 QPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAI 715

Query: 623 LDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPR 682
           LDLS+N  +G IP  LT L  L   ++S N+LSG  P +  F  F +  +  NS LCG  
Sbjct: 716 LDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANNS-LCGYP 774

Query: 683 INKSCTTVLEPPETPSDGAEEDESAVDMVAFYWSFVAS---SVTVILGLFAILWVNSYWR 739
           +   C++        SD  +  +S     +   S       S+  I GL  +       R
Sbjct: 775 LPLPCSS-----GPKSDANQHQKSHRRQASLAGSVAMGLLFSLFCIFGLIIVAIETKKRR 829

Query: 740 RLWFYFIDAYID 751
           R     ++AY+D
Sbjct: 830 RKKEAALEAYMD 841

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  221 bits (563), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 209/693 (30%), Positives = 323/693 (46%), Gaps = 79/693 (11%)

Query: 51  SCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG 110
           SCR T  +P      +    L +L  L L  N L G +   + N T + +   + N+L G
Sbjct: 177 SCRLTGLIP------SRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNG 230

Query: 111 NLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKL-SNSLVKIETEEFPGLPE 169
           +L + +  +K+L+ L+L DN+F G    + L +   +Q   L  N L  +  +    L  
Sbjct: 231 SLPAELNRLKNLQTLNLGDNSFSGEIP-SQLGDLVSIQYLNLIGNQLQGLIPKRLTELAN 289

Query: 170 YQLKALNLRNCSLHALPSF-LLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNN 228
            Q   L+  N +      F  ++QL+  F+ L+ N+L G+ P  +  NNT L  L+L   
Sbjct: 290 LQTLDLSSNNLTGVIHEEFWRMNQLE--FLVLAKNRLSGSLPKTICSNNTSLKQLFLSET 347

Query: 229 SLSGNFQLPSSKHDLLRI-DISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMS 287
            LSG      S    L++ D+S+N  +GQ+P ++ +++ EL +L L+ N  E  + SS+S
Sbjct: 348 QLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLV-ELTNLYLNNNSLEGTLSSSIS 406

Query: 288 EMKRLESLDLSSNNFSGELPRQ--FLSGCFSLSFLSLSDNHLQGE--VVFPNSTNLCWLY 343
            +  L+   L  NN  G++P++  FL     L  + L +N   GE  V   N T L  + 
Sbjct: 407 NLTNLQEFTLYHNNLEGKVPKEIGFLG---KLEIMYLYENRFSGEMPVEIGNCTRLQEID 463

Query: 344 LNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPS 403
              N  SG+I   + +   L  L L  N L G IP   GN   +  +D+++NQLSGS+PS
Sbjct: 464 WYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPS 523

Query: 404 SF-------------------------NLSSLRRLYMHMNAFNGSI-------------- 424
           SF                         NL +L R+    N FNGSI              
Sbjct: 524 SFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDV 583

Query: 425 ---------PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQ 475
                    P  L +S++L  L L  NQF+G IP    + S L +L +  N L G IP +
Sbjct: 584 TENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVE 643

Query: 476 LCHLSLLNILDLSYNKFNGPIPVCFANVTLW-TLGQAAGSFV------LWETTQRISTEF 528
           L     L  +DL+ N  +G IP     + L   L  ++  FV      ++  T  ++   
Sbjct: 644 LGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFL 703

Query: 529 EAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPS 588
           +    +     E+ +    +     E        S  G  L+ +  L  S N LTG+IP 
Sbjct: 704 DGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGK-LSKLFELRLSRNALTGEIPV 762

Query: 589 EIGSLSEIR-ALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNF 647
           EIG L +++ AL+LS+N  +G IP ++S L  +ESLDLSHN L G++P Q+ ++  L   
Sbjct: 763 EIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYL 822

Query: 648 NVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCG 680
           N+SYN+L G      QF+ +    + GN+GLCG
Sbjct: 823 NLSYNNLEGKLKK--QFSRWQADAFVGNAGLCG 853

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  219 bits (559), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 206/634 (32%), Positives = 303/634 (47%), Gaps = 37/634 (5%)

Query: 68  ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 127
           IC+L  L +L++S N + G +   LS    ++VLDL +N+  G +   +  I +L+ L L
Sbjct: 87  ICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYL 146

Query: 128 DDNNFEGSFSFNSLKNHSKLQVFKL-SNSLVKIETEEFPGLPEYQLKALNLRNCSLHALP 186
            +N   GS     + N S LQ   + SN+L  +       L + ++     RN     +P
Sbjct: 147 CENYLFGSIP-RQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAG-RNGFSGVIP 204

Query: 187 SFLLHQLDLRFIDLSHNKLQGTFPSWL--LQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 244
           S +     L+ + L+ N L+G+ P  L  LQN   L  L L  N LSG  ++P S  ++ 
Sbjct: 205 SEISGCESLKVLGLAENLLEGSLPKQLEKLQN---LTDLILWQNRLSG--EIPPSVGNIS 259

Query: 245 RIDI---SHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNN 301
           R+++     N F+G +P  +GK L ++  L L  N     IP  +  +     +D S N 
Sbjct: 260 RLEVLALHENYFTGSIPREIGK-LTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQ 318

Query: 302 FSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSK 359
            +G +P++F     +L  L L +N L G +       T L  L L+ N  +G I   L  
Sbjct: 319 LTGFIPKEF-GHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQF 377

Query: 360 ATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMN 418
              L++L L +N L G+IP   G  S    LD+S N LSG +P+ F    +L  L +  N
Sbjct: 378 LPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSN 437

Query: 419 AFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCH 478
             +G+IP  L+   SLT L L DNQ +GS+PI +     L  L L  N L GNI   L  
Sbjct: 438 KLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGK 497

Query: 479 LSLLNILDLSYNKFNGPIPVCFANVTLWT------------LGQAAGSFVLWETTQRIST 526
           L  L  L L+ N F G IP    N+T               + +  GS V  +       
Sbjct: 498 LKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGN 557

Query: 527 EFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDI 586
           +F  Y    L         + S  R    +T +   S+ GD+   M  L    N L+ +I
Sbjct: 558 KFSGYIAQELGQLVYLEILRLSDNR----LTGEIPHSF-GDLTRLME-LQLGGNLLSENI 611

Query: 587 PSEIGSLSEIR-ALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLS 645
           P E+G L+ ++ +LN+SHN LSG+IP SL NL+M+E L L+ N LSG+IP  +  L  L 
Sbjct: 612 PVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLL 671

Query: 646 NFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLC 679
             N+S N+L G  P+   F   D  N+ GN GLC
Sbjct: 672 ICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  219 bits (558), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 212/745 (28%), Positives = 324/745 (43%), Gaps = 143/745 (19%)

Query: 73  KLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNF 132
           +++ L+LS   L G LSP +  L H+K LDLS N L+G +   I N  SLE L L++N F
Sbjct: 74  EVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQF 133

Query: 133 EGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQ 192
           +G                                +P    K ++L N  ++         
Sbjct: 134 DGE-------------------------------IPVEIGKLVSLENLIIY--------- 153

Query: 193 LDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRID---IS 249
                    +N++ G+ P   + N   L  L   +N++SG  QLP S  +L R+      
Sbjct: 154 ---------NNRISGSLPVE-IGNLLSLSQLVTYSNNISG--QLPRSIGNLKRLTSFRAG 201

Query: 250 HNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQ 309
            N  SG LP  +G     L+ L L++N     +P  +  +K+L  + L  N FSG +PR+
Sbjct: 202 QNMISGSLPSEIGGC-ESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPRE 260

Query: 310 FLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELD 367
            +S C SL  L+L  N L G +     +  +L +LYL  N  +G I   +   +  +E+D
Sbjct: 261 -ISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEID 319

Query: 368 LSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFN-LSSLRRLYMHMNAFNGSIPG 426
            S N L G+IP   GN+ GL+ L + ENQL+G++P   + L +L +L + +NA  G IP 
Sbjct: 320 FSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPL 379

Query: 427 ALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILD 486
             +    L +L L  N  SG+IP  +  +S L +L +  N L G IP+ LC  S + IL+
Sbjct: 380 GFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILN 439

Query: 487 LSYNKFNGPIPVCFANV-TLWTLGQAAGSFV-----------------LWETTQRISTEF 528
           L  N  +G IP       TL  L  A  + V                 L +   R S   
Sbjct: 440 LGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPR 499

Query: 529 EAYYNSTLE-LSEVKHFYKASGQRGIEFMTK---------KRYESYKGDILN--YMTGLD 576
           E    S L+ L    + +     R I  +++         K       +I N   +  LD
Sbjct: 500 EVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLD 559

Query: 577 FSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIE--------------- 621
             CN  +G +PSE+GSL ++  L LS+N LSG+IP +L NL  +                
Sbjct: 560 MCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPR 619

Query: 622 ----------SLDLSHNDLSGQIPPQLTELNFLS------------------------NF 647
                     +L+LS+N L+G+IPP+L+ L  L                          +
Sbjct: 620 ELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGY 679

Query: 648 NVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTTVLEPPETPSDGAEEDESA 707
           N SYN L+GP P      N    ++ GN GLCGP +N+   T    P + S G      +
Sbjct: 680 NFSYNSLTGPIP---LLRNISMSSFIGNEGLCGPPLNQCIQTQPFAP-SQSTGKPGGMRS 735

Query: 708 VDMVAFYWSFVASSVTVILGLFAIL 732
             ++A   + +     +++ L   L
Sbjct: 736 SKIIAITAAVIGGVSLMLIALIVYL 760

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	764
358345471	933	Receptor kinase [Medicago truncatula] gi	0.903	0.739	0.486	1e-175
255553269	2793	receptor-kinase, putative [Ricinus commu	0.890	0.243	0.494	1e-168
297842171	966	leucine-rich repeat family protein [Arab	0.887	0.701	0.471	1e-162
15221162	965	receptor like protein 15 [Arabidopsis th	0.891	0.705	0.465	1e-161
12324907	910	putative disease resistance protein; 468	0.887	0.745	0.467	1e-160
238478394	1083	receptor like protein 1 [Arabidopsis tha	0.976	0.688	0.443	1e-160
238478392	913	receptor like protein 1 [Arabidopsis tha	0.900	0.753	0.463	1e-159
240254032	1034	receptor like protein 1 [Arabidopsis tha	0.900	0.665	0.463	1e-159
358345693	1011	Receptor-like protein kinase [Medicago t	0.863	0.652	0.453	1e-159
357468861	1016	Receptor-like protein kinase [Medicago t	0.863	0.649	0.453	1e-159

>gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 372/764 (48%), Positives = 475/764 (62%), Gaps = 74/764 (9%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
           TG+C +K L ELDLS+N + G+   CL NLT ++VLDLSSN   GN+ S I ++KSLEYL
Sbjct: 176 TGLCGMKNLQELDLSRNGMSGYFPQCLRNLTSLRVLDLSSNNFVGNIPSFIISLKSLEYL 235

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLSNSL--VKIETEEFPGL-PEYQLKALNLRNCSL 182
           SL D NF+G FSF+SL NHSKL+VF LS     + +ETEE P   P +QLK L LRNC L
Sbjct: 236 SLFDTNFDGIFSFSSLNNHSKLEVFLLSPKTNNLYVETEESPSWHPTFQLKVLQLRNCFL 295

Query: 183 HA-----LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLP 237
           ++      P+FLL+Q +L+ +DLSHNKL G FPSW+L+NNTKL+TLYL+NNS +G  +LP
Sbjct: 296 NSKRDGTFPTFLLYQHELQLLDLSHNKLSGNFPSWILENNTKLETLYLMNNSFTGTLELP 355

Query: 238 SSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDL 297
           + KH LL + IS+NK  GQL  ++GKI P L  +NLS+N FE  +PSS+ EM+ + +LDL
Sbjct: 356 TFKHGLLDLQISNNKIGGQLQEDIGKIFPNLYYVNLSKNSFEGILPSSIGEMQTIRTLDL 415

Query: 298 SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQDG 356
           S+NNFSGEL    +S   SL  L LS N   G V +  N T L WLYLNNN FSG I+DG
Sbjct: 416 SNNNFSGELSSHLISNLTSLRLLRLSHNSFHGLVPLLSNLTRLNWLYLNNNSFSGVIEDG 475

Query: 357 LSKATSLLELDLSNNMLYGQIPHWFG------------------------NLSGLQFLDI 392
           +S  +SL  LD+SNNML G+IP W G                        NL  L +LD+
Sbjct: 476 VSNNSSLFSLDISNNMLSGRIPRWIGRFTKLSVLSLSKNRLQGEIPNELCNLISLSYLDL 535

Query: 393 SENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIW 451
           SEN LS  +P  F N   ++ LY+  NA  G+IP A  + + LT LDLRDN F G+IP W
Sbjct: 536 SENNLSDFLPYCFKNFKYMKFLYLQKNALQGNIPYAFSQLTKLTSLDLRDNNFFGNIPQW 595

Query: 452 INEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTL--- 508
           IN  S L +LLL GN+L G IP  +C L  + I+DLS+N  N  IP C  N++   +   
Sbjct: 596 INRLSKLRVLLLAGNKLTGPIPIYVCELEHVRIMDLSHNWINETIPPCIKNISFKMVEFQ 655

Query: 509 ----------------------GQAAGSFV-----LWETTQRISTEFEAYYNSTLELSE- 540
                                 G  A S++     +W T       F+ +YNS+L L+  
Sbjct: 656 TTAVGGRAVQNDNDSKDKIQYYGNTATSYIFLVDDIWFTP---GNTFDIFYNSSLSLNHP 712

Query: 541 VKHFYKASGQ-RGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRAL 599
           +   Y  S +   IEF TK  Y SYKG+ LN MTGLD S N L+G IP EIG L +I+AL
Sbjct: 713 IADEYMISYEIVEIEFRTKSYYLSYKGNNLNLMTGLDLSSNNLSGSIPPEIGELRDIKAL 772

Query: 600 NLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTP 659
           NLSHN  SGSIP +  NL  IESLDLS+N+LSG +P  LT L  L+ FNVSYN  SG  P
Sbjct: 773 NLSHNRFSGSIPGTFPNLINIESLDLSYNNLSGALPQNLTNLYSLAIFNVSYNKFSGRVP 832

Query: 660 NAGQFANFDEQNYGGNSGLCGPRINKSCT-TVLEPPETPSDGAEEDESAVDMVAFYWSFV 718
              QFANFDE NY GNS LCG  IN +C  T + PP + +    + ++A+DM +FYWS V
Sbjct: 833 TTMQFANFDENNYRGNSDLCGSVINITCNHTSIFPPASTT----QHQTAIDMESFYWSCV 888

Query: 719 ASSVTVILGLFAILWVNSYWRRLWFYFIDAYIDLCYYWFYKYVF 762
           AS VTV++GL  ILWVNS+W R+WF ++D  I  C+   +K VF
Sbjct: 889 ASYVTVVIGLAVILWVNSHWCRVWFRYVDLCIFYCFSRCFKNVF 932

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553269|ref|XP_002517677.1| receptor-kinase, putative [Ricinus communis] gi|223543309|gb|EEF44841.1| receptor-kinase, putative [Ricinus communis]

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 351/710 (49%), Positives = 464/710 (65%), Gaps = 30/710 (4%)

Query: 51   SCRKTSGVPLTV------------------FVNTGICELKKLVELDLSKNNLYGHLSPCL 92
            SC  TSG+  T+                  F   G+C LK L+EL LS N   G L  CL
Sbjct: 1172 SCMMTSGLSTTIHLHSRSRLLSDILFAFSFFSFVGLCGLKSLLELGLSVNQFSGPLPQCL 1231

Query: 93   SNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKL 152
            SNLT+++VLDL+SN+ +GN+QSV++ + SL+YL L  N FEG FSF+SL NH KL++F+L
Sbjct: 1232 SNLTNLQVLDLTSNEFSGNIQSVVSKLTSLKYLFLSGNKFEGLFSFSSLANHKKLEIFEL 1291

Query: 153  SN--SLVKIETEEFPGLPEYQLKALNLRNCSLH----ALPSFLLHQLDLRFIDLSHNKLQ 206
            S+  +++++ETE     P +QLK ++L NC+L+     +PSFLL+Q DL+FIDLSHN L 
Sbjct: 1292 SSGSTMLELETEIPVWFPTFQLKVIDLPNCNLNLRTRRIPSFLLYQHDLQFIDLSHNNLI 1351

Query: 207  GTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILP 266
            G FPSW+LQNN++L+ + ++NNS +G FQLPS +H+L+ + IS N  +GQ+P ++G +L 
Sbjct: 1352 GAFPSWILQNNSRLEVMNMMNNSFTGTFQLPSYRHELINLKISSNSIAGQIPKDIGLLLS 1411

Query: 267  ELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNH 326
             L  LN+S N FE  IPSS+S+M+ L  LDLS+N FSGELPR  LS    L  L LS+N+
Sbjct: 1412 NLRYLNMSWNCFEGNIPSSISQMEGLSILDLSNNYFSGELPRSLLSNSTYLVALVLSNNN 1471

Query: 327  LQGEVVFPNSTNL---CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGN 383
             QG + FP + NL     L +NNN+FSGKI         L  LD+S N + G IP    N
Sbjct: 1472 FQGRI-FPETMNLEELTVLDMNNNNFSGKIDVDFFYCPRLSVLDISKNKVAGVIPIQLCN 1530

Query: 384  LSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQ 443
            LS ++ LD+SEN+  G++PS FN SSLR L++  N  NG IP  L RSS+L V+DLR+N+
Sbjct: 1531 LSSVEILDLSENRFFGAMPSCFNASSLRYLFLQKNGLNGLIPHVLSRSSNLVVVDLRNNK 1590

Query: 444  FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANV 503
            FSG+IP WI++ S L +LLL GN L G+IPNQLC L  L I+DLS+N   G IP CF N+
Sbjct: 1591 FSGNIPSWISQLSELHVLLLGGNALGGHIPNQLCQLRNLKIMDLSHNLLCGSIPSCFHNI 1650

Query: 504  TLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHF-YKASGQRGIEFMTKKRYE 562
            +  ++ + + S            +  AYY +TLEL       + +S +  +EF+ K RY 
Sbjct: 1651 SFGSMVEESFSSSSIGVAMASHYDSYAYYKATLELDLPGLLSWSSSSEVQVEFIMKYRYN 1710

Query: 563  SYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIES 622
            SYKG ++N M G+D S NEL G+IPSEIG + EIR+LNLS+N LSGSIP S SNLK +ES
Sbjct: 1711 SYKGSVINLMAGIDLSRNELRGEIPSEIGDIQEIRSLNLSYNHLSGSIPFSFSNLKNLES 1770

Query: 623  LDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPR 682
            LDL +N LSG+IP QL ELNFL  F+VSYN+LSG     GQF  FDE +Y GN  LCG  
Sbjct: 1771 LDLRNNSLSGEIPTQLVELNFLGTFDVSYNNLSGRILEKGQFGTFDESSYKGNPELCGDL 1830

Query: 683  INKSCTTVLEPPETPS-DGAEEDESAVDMVAFYWSFVASSVTVILGLFAI 731
            I++SC T    P +PS D  EEDE  +DM  FYWSF AS V      FA+
Sbjct: 1831 IHRSCNTEATTPPSPSPDVDEEDEGPIDMFWFYWSFCASYVIAFEMEFAM 1880

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842171|ref|XP_002888967.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334808|gb|EFH65226.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 342/725 (47%), Positives = 456/725 (62%), Gaps = 47/725 (6%)

Query: 67  GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 126
           GICELK   ELDLS+N L GH   CL++LT ++VLDLSSNQLTG + S + ++ SLEYLS
Sbjct: 242 GICELKNTQELDLSQNQLVGHFPSCLTSLTGLRVLDLSSNQLTGTVPSTLGSLPSLEYLS 301

Query: 127 LDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIET-EEFPGLPEYQLKALNLRNCSLHAL 185
           L DN+FEGSFSF SL N S L V KL +    ++   E    P++QL  + LR+C++  +
Sbjct: 302 LFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKV 361

Query: 186 PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 245
           P FL+HQ DLR +DLS+NK+ G  PSWLL NNTKL  L L NN  + +FQ+P S HDLL 
Sbjct: 362 PHFLIHQKDLRHVDLSNNKISGKLPSWLLANNTKLKVLLLQNNFFT-SFQIPKSAHDLLF 420

Query: 246 IDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGE 305
           +D S N+F+   P N+G I P L  +N+ +N F+  +PSS+  MK L+ LDLS N+F G+
Sbjct: 421 LDASANEFNHLFPENIGWIFPHLRYMNIYKNDFQGNLPSSLGNMKGLQYLDLSHNSFHGK 480

Query: 306 LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLC---WLYLNNNHFSGKIQDGLSKATS 362
           LPR F++GC+S++ L LS N L GE+ FP STNL     L+++NN F+GKI  GL    +
Sbjct: 481 LPRSFVNGCYSMAILKLSHNKLSGEI-FPESTNLTSLLGLFMDNNLFTGKIGQGLRSLIN 539

Query: 363 LLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSS-FNLSSLRRLYMHMNAFN 421
           L  LD+SNN L G IP W G L  L  L IS+N L G +P+S FN SSL+ L +  N+ +
Sbjct: 540 LELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGEIPTSLFNKSSLQLLDLSTNSLS 599

Query: 422 GSIP-------------------GALRRS--SSLTVLDLRDNQFSGSIPIWINEFSYLGI 460
           G IP                   G +  +   ++ +LDLR+N+FSG+IP +IN    + I
Sbjct: 600 GGIPPHHDSRDGVVLLLQDNNLSGTIADTLLVNVEILDLRNNRFSGNIPEFINT-QNISI 658

Query: 461 LLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGS------ 514
           LLLRGN+L G IP+QLC LS + +LDLS N+ NG IP C +N T +  G+   S      
Sbjct: 659 LLLRGNKLTGRIPHQLCGLSNIQLLDLSNNRLNGSIPSCLSN-TSFGFGKECTSYDYDFG 717

Query: 515 -------FVLWETTQRISTEFEA--YYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYK 565
                  F  +   Q +S+   +  Y+ S L L      YKA+ Q  IEF TK RY++Y 
Sbjct: 718 ISFPSDVFNGFSLHQDLSSNKNSGIYFKSLLMLDPFSMDYKAATQTKIEFATKHRYDAYM 777

Query: 566 GDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDL 625
           G  L  + G+D S NEL+G+IP E G L E+RALNLSHN LSG IP+SLS+++ +ES DL
Sbjct: 778 GGNLKLLFGIDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSLSSMEKMESFDL 837

Query: 626 SHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINK 685
           S N L G+IP QLTEL  LS F VS+N+LSG  P   QF  FD ++Y GN  LCG   N+
Sbjct: 838 SFNRLQGRIPAQLTELTSLSVFKVSHNNLSGVIPEGRQFNTFDAESYLGNRLLCGQPTNR 897

Query: 686 SCTTVLEPPETPSDGAEEDESAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYF 745
           SC       E   D  E++ES +DM +FYWSF A+ VT+++G+ A L  +S W+R WF  
Sbjct: 898 SCNN--NSFEEADDEVEDNESTIDMESFYWSFGAAYVTILVGILASLSFDSPWKRFWFDT 955

Query: 746 IDAYI 750
           +DA+I
Sbjct: 956 VDAFI 960

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221162|ref|NP_177559.1| receptor like protein 15 [Arabidopsis thaliana] gi|12323812|gb|AAG51871.1|AC079678_1 disease resistance protein, putative; 1096-4664 [Arabidopsis thaliana] gi|332197443|gb|AEE35564.1| receptor like protein 15 [Arabidopsis thaliana]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 339/728 (46%), Positives = 453/728 (62%), Gaps = 47/728 (6%)

Query: 64  VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 123
           + +GICEL  + ELDLS+N L GHL  CL++LT ++VLDLSSN+LTG + S + +++SLE
Sbjct: 236 IQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLE 295

Query: 124 YLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIET-EEFPGLPEYQLKALNLRNCSL 182
           YLSL DN+FEGSFSF SL N S L V KL +    ++   E    P++QL  + LR+C++
Sbjct: 296 YLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNM 355

Query: 183 HALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD 242
             +P FLLHQ DLR +DLS N + G  PSWLL NNTKL  L LL N+L  +FQ+P S H+
Sbjct: 356 EKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVL-LLQNNLFTSFQIPKSAHN 414

Query: 243 LLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNF 302
           LL +D+S N F+   P N+G I P L  LN S+N F+  +PSS+  M  ++ +DLS N+F
Sbjct: 415 LLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSF 474

Query: 303 SGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTN---LCWLYLNNNHFSGKIQDGLSK 359
            G LPR F++GC+S++ L LS N L GE+ FP STN   +  L+++NN F+GKI  GL  
Sbjct: 475 HGNLPRSFVNGCYSMAILKLSHNKLSGEI-FPESTNFTNILGLFMDNNLFTGKIGQGLRS 533

Query: 360 ATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSS-FNLSSLRRLYMHMN 418
             +L  LD+SNN L G IP W G L  L  L IS+N L G +P S FN SSL+ L +  N
Sbjct: 534 LINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSAN 593

Query: 419 AFNGSIP-------------------GALRRS--SSLTVLDLRDNQFSGSIPIWINEFSY 457
           + +G IP                   G +  +  +++ +LDLR+N+FSG IP +IN    
Sbjct: 594 SLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLANVEILDLRNNRFSGKIPEFIN-IQN 652

Query: 458 LGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGS--- 514
           + ILLLRGN   G IP+QLC LS + +LDLS N+ NG IP C +N T +  G+   S   
Sbjct: 653 ISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSN-TSFGFGKECTSYDY 711

Query: 515 ----------FVLWETTQRISTEFEA--YYNSTLELSEVKHFYKASGQRGIEFMTKKRYE 562
                     F  +   Q  S+      Y+ S L L  +   YKA+ Q  IEF TK RY+
Sbjct: 712 DFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQTKIEFATKHRYD 771

Query: 563 SYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIES 622
           +Y G  L  + G+D S NEL+G+IP E G L E+RALNLSHN LSG IP+S+S+++ +ES
Sbjct: 772 AYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMES 831

Query: 623 LDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPR 682
            DLS N L G+IP QLTEL  LS F VS+N+LSG  P   QF  FD ++Y GN  LCG  
Sbjct: 832 FDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGNRLLCGQP 891

Query: 683 INKSCTTVLEPPETPSDGAEEDESAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLW 742
            N+SC       E   +G E DES +DMV+FY SF A+ VT+++G+ A L  +S W R W
Sbjct: 892 TNRSCNN--NSYEEADNGVEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSRFW 949

Query: 743 FYFIDAYI 750
           FY +DA+I
Sbjct: 950 FYKVDAFI 957

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12324907|gb|AAG52409.1|AC020579_11 putative disease resistance protein; 46848-50365 [Arabidopsis thaliana]

 Score =  573 bits (1476), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 339/725 (46%), Positives = 451/725 (62%), Gaps = 47/725 (6%)

Query: 67  GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 126
           GICEL  + ELDLS+N L GHL  CL++LT ++VLDLSSN+LTG + S + +++SLEYLS
Sbjct: 184 GICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLS 243

Query: 127 LDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIET-EEFPGLPEYQLKALNLRNCSLHAL 185
           L DN+FEGSFSF SL N S L V KL +    ++   E    P++QL  + LR+C++  +
Sbjct: 244 LFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNMEKV 303

Query: 186 PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 245
           P FLLHQ DLR +DLS N + G  PSWLL NNTKL  L LL N+L  +FQ+P S H+LL 
Sbjct: 304 PHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVL-LLQNNLFTSFQIPKSAHNLLF 362

Query: 246 IDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGE 305
           +D+S N F+   P N+G I P L  LN S+N F+  +PSS+  M  ++ +DLS N+F G 
Sbjct: 363 LDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSFHGN 422

Query: 306 LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTN---LCWLYLNNNHFSGKIQDGLSKATS 362
           LPR F++GC+S++ L LS N L GE+ FP STN   +  L+++NN F+GKI  GL    +
Sbjct: 423 LPRSFVNGCYSMAILKLSHNKLSGEI-FPESTNFTNILGLFMDNNLFTGKIGQGLRSLIN 481

Query: 363 LLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSS-FNLSSLRRLYMHMNAFN 421
           L  LD+SNN L G IP W G L  L  L IS+N L G +P S FN SSL+ L +  N+ +
Sbjct: 482 LELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLS 541

Query: 422 GSIP-------------------GALRRS--SSLTVLDLRDNQFSGSIPIWINEFSYLGI 460
           G IP                   G +  +  +++ +LDLR+N+FSG IP +IN    + I
Sbjct: 542 GVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLANVEILDLRNNRFSGKIPEFIN-IQNISI 600

Query: 461 LLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGS------ 514
           LLLRGN   G IP+QLC LS + +LDLS N+ NG IP C +N T +  G+   S      
Sbjct: 601 LLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSN-TSFGFGKECTSYDYDFG 659

Query: 515 -------FVLWETTQRISTEFEA--YYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYK 565
                  F  +   Q  S+      Y+ S L L  +   YKA+ Q  IEF TK RY++Y 
Sbjct: 660 ISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQTKIEFATKHRYDAYM 719

Query: 566 GDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDL 625
           G  L  + G+D S NEL+G+IP E G L E+RALNLSHN LSG IP+S+S+++ +ES DL
Sbjct: 720 GGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDL 779

Query: 626 SHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINK 685
           S N L G+IP QLTEL  LS F VS+N+LSG  P   QF  FD ++Y GN  LCG   N+
Sbjct: 780 SFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGNRLLCGQPTNR 839

Query: 686 SCTTVLEPPETPSDGAEEDESAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYF 745
           SC       E   +G E DES +DMV+FY SF A+ VT+++G+ A L  +S W R WFY 
Sbjct: 840 SCNN--NSYEEADNGVEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSRFWFYK 897

Query: 746 IDAYI 750
           +DA+I
Sbjct: 898 VDAFI 902

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478394|ref|NP_001154318.1| receptor like protein 1 [Arabidopsis thaliana] gi|332189998|gb|AEE28119.1| receptor like protein 1 [Arabidopsis thaliana]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 353/796 (44%), Positives = 472/796 (59%), Gaps = 50/796 (6%)

Query: 9    RINFRLCVQIIEHVWSPIIKKPQE--LWHKFFPKGSITDFSVEDSCR------KTSGVPL 60
            R +FR  VQ +E +W  +    Q     HK    G      +E          K + + L
Sbjct: 287  RFDFREVVQKVETLWIGLRLSFQMSITHHKSVTVGGNGFLGLEIPTSLQVLDFKRNQLSL 346

Query: 61   TVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIK 120
            T     GIC L KL ELDLS N L   L  CL NLTH++ LDLS+NQL GNL S ++ + 
Sbjct: 347  THEGYLGICRLMKLRELDLSSNALTS-LPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLP 405

Query: 121  S-LEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETE-EFPGLPEYQLKALNLR 178
            S LEYLSL DNNF+GSF FNSL N ++L VFKLS+ +  I+ + E    P +QLK L L 
Sbjct: 406  SVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLS 465

Query: 179  NCSLHA-LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLP 237
            NCSL + +  FL+HQ DL F+DLSHNKL GTFP+WL++NNT+L T+ L  NSL+   QLP
Sbjct: 466  NCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLP 524

Query: 238  SSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDL 297
               H L  +DIS N     +  ++G + P L  +N S N F+  IPSS+ EMK L+ LD+
Sbjct: 525  ILVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDM 584

Query: 298  SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQD 355
            SSN   G+LP  FLSGC+SL  L LS+N LQG++     N T L  L+L+ N+F+G +++
Sbjct: 585  SSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEE 644

Query: 356  GLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFL-----------------------DI 392
            GL K+ +L  LD+S+N   G +P W G +S L +L                       DI
Sbjct: 645  GLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPFLRQSPWVEVMDI 704

Query: 393  SENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI 452
            S N  SGS+P + N  SLR L +  N F G +PG L +++ L VLDLR+N FSG I   I
Sbjct: 705  SHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTI 764

Query: 453  NEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWT-LGQA 511
            ++ S L ILLLR N  +  IP ++C LS + +LDLS+N+F GPIP CF+ ++        
Sbjct: 765  DQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDR 824

Query: 512  AGSFVLWETTQRISTEFEAYYNSTLELSE-VKHFYKASGQRGIEFMTKKRYESYKGDILN 570
              S V       I+      Y S L L + V++ Y+      ++F+TK RYE+Y+GDIL 
Sbjct: 825  TMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILR 884

Query: 571  YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDL 630
            YM GLD S NEL+G+IP EIG L  IR+LNLS N L+GSIP S+S LK +ESLDLS+N L
Sbjct: 885  YMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKL 944

Query: 631  SGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTT- 689
             G IPP L +LN L   N+SYN+LSG  P  G    FDE++Y GN+ LCG   NK+C + 
Sbjct: 945  DGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKNCISQ 1004

Query: 690  -VLEPPETPSDGAEEDE----SAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFY 744
             V EPP   +   EE+     + +DMV FYW+  A  ++  L LFA L+++S W R WFY
Sbjct: 1005 RVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSREWFY 1064

Query: 745  FIDAYIDLCYYWFYKY 760
                 +DLC +   ++
Sbjct: 1065 ----RVDLCVHHILQF 1076

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478392|ref|NP_001154317.1| receptor like protein 1 [Arabidopsis thaliana] gi|332189997|gb|AEE28118.1| receptor like protein 1 [Arabidopsis thaliana]

 Score =  570 bits (1468), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 338/730 (46%), Positives = 450/730 (61%), Gaps = 42/730 (5%)

Query: 67  GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKS-LEYL 125
           GIC L KL ELDLS N L   L  CL NLTH++ LDLS+NQL GNL S ++ + S LEYL
Sbjct: 183 GICRLMKLRELDLSSNALTS-LPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEYL 241

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETE-EFPGLPEYQLKALNLRNCSLHA 184
           SL DNNF+GSF FNSL N ++L VFKLS+ +  I+ + E    P +QLK L L NCSL +
Sbjct: 242 SLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLSNCSLGS 301

Query: 185 -LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 243
            +  FL+HQ DL F+DLSHNKL GTFP+WL++NNT+L T+ L  NSL+   QLP   H L
Sbjct: 302 TMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILVHGL 360

Query: 244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFS 303
             +DIS N     +  ++G + P L  +N S N F+  IPSS+ EMK L+ LD+SSN   
Sbjct: 361 QVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLY 420

Query: 304 GELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKAT 361
           G+LP  FLSGC+SL  L LS+N LQG++     N T L  L+L+ N+F+G +++GL K+ 
Sbjct: 421 GQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSK 480

Query: 362 SLLELDLSNNMLYGQIPHWFGNLSGLQFL-----------------------DISENQLS 398
           +L  LD+S+N   G +P W G +S L +L                       DIS N  S
Sbjct: 481 NLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPFLRQSPWVEVMDISHNSFS 540

Query: 399 GSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYL 458
           GS+P + N  SLR L +  N F G +PG L +++ L VLDLR+N FSG I   I++ S L
Sbjct: 541 GSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKL 600

Query: 459 GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWT-LGQAAGSFVL 517
            ILLLR N  +  IP ++C LS + +LDLS+N+F GPIP CF+ ++          S V 
Sbjct: 601 RILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVA 660

Query: 518 WETTQRISTEFEAYYNSTLELSE-VKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLD 576
                 I+      Y S L L + V++ Y+      ++F+TK RYE+Y+GDIL YM GLD
Sbjct: 661 DFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILRYMHGLD 720

Query: 577 FSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPP 636
            S NEL+G+IP EIG L  IR+LNLS N L+GSIP S+S LK +ESLDLS+N L G IPP
Sbjct: 721 LSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPP 780

Query: 637 QLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTT--VLEPP 694
            L +LN L   N+SYN+LSG  P  G    FDE++Y GN+ LCG   NK+C +  V EPP
Sbjct: 781 ALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKNCISQRVPEPP 840

Query: 695 ETPSDGAEEDE----SAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYFIDAYI 750
              +   EE+     + +DMV FYW+  A  ++  L LFA L+++S W R WFY     +
Sbjct: 841 SVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSREWFY----RV 896

Query: 751 DLCYYWFYKY 760
           DLC +   ++
Sbjct: 897 DLCVHHILQF 906

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254032|ref|NP_172219.5| receptor like protein 1 [Arabidopsis thaliana] gi|332189996|gb|AEE28117.1| receptor like protein 1 [Arabidopsis thaliana]

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 338/730 (46%), Positives = 450/730 (61%), Gaps = 42/730 (5%)

Query: 67   GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKS-LEYL 125
            GIC L KL ELDLS N L   L  CL NLTH++ LDLS+NQL GNL S ++ + S LEYL
Sbjct: 304  GICRLMKLRELDLSSNALTS-LPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLPSVLEYL 362

Query: 126  SLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETE-EFPGLPEYQLKALNLRNCSLHA 184
            SL DNNF+GSF FNSL N ++L VFKLS+ +  I+ + E    P +QLK L L NCSL +
Sbjct: 363  SLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLSNCSLGS 422

Query: 185  -LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 243
             +  FL+HQ DL F+DLSHNKL GTFP+WL++NNT+L T+ L  NSL+   QLP   H L
Sbjct: 423  TMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILVHGL 481

Query: 244  LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFS 303
              +DIS N     +  ++G + P L  +N S N F+  IPSS+ EMK L+ LD+SSN   
Sbjct: 482  QVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSNGLY 541

Query: 304  GELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKAT 361
            G+LP  FLSGC+SL  L LS+N LQG++     N T L  L+L+ N+F+G +++GL K+ 
Sbjct: 542  GQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLLKSK 601

Query: 362  SLLELDLSNNMLYGQIPHWFGNLSGLQFL-----------------------DISENQLS 398
            +L  LD+S+N   G +P W G +S L +L                       DIS N  S
Sbjct: 602  NLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPFLRQSPWVEVMDISHNSFS 661

Query: 399  GSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYL 458
            GS+P + N  SLR L +  N F G +PG L +++ L VLDLR+N FSG I   I++ S L
Sbjct: 662  GSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILNTIDQTSKL 721

Query: 459  GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWT-LGQAAGSFVL 517
             ILLLR N  +  IP ++C LS + +LDLS+N+F GPIP CF+ ++          S V 
Sbjct: 722  RILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQNDRTMSLVA 781

Query: 518  WETTQRISTEFEAYYNSTLELSE-VKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLD 576
                  I+      Y S L L + V++ Y+      ++F+TK RYE+Y+GDIL YM GLD
Sbjct: 782  DFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDILRYMHGLD 841

Query: 577  FSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPP 636
             S NEL+G+IP EIG L  IR+LNLS N L+GSIP S+S LK +ESLDLS+N L G IPP
Sbjct: 842  LSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNKLDGSIPP 901

Query: 637  QLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTT--VLEPP 694
             L +LN L   N+SYN+LSG  P  G    FDE++Y GN+ LCG   NK+C +  V EPP
Sbjct: 902  ALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGLPTNKNCISQRVPEPP 961

Query: 695  ETPSDGAEEDE----SAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYFIDAYI 750
               +   EE+     + +DMV FYW+  A  ++  L LFA L+++S W R WFY     +
Sbjct: 962  SVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSREWFY----RV 1017

Query: 751  DLCYYWFYKY 760
            DLC +   ++
Sbjct: 1018 DLCVHHILQF 1027

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 328/724 (45%), Positives = 439/724 (60%), Gaps = 64/724 (8%)

Query: 67  GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 126
           G+C  K LVELD+SKN     L  CLSNLT+++VL+LS+N  +GN  S I+N+ SL YLS
Sbjct: 268 GLCNFKDLVELDISKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFPSFISNLTSLAYLS 327

Query: 127 LDDNNFEGSFSFNSLKNHSKLQVFKLS---NSLVKIETEEFPGLPEYQLKALNLRNCSLH 183
              N  +GSFS ++L NHS L+V  +S   N  V IETE+    P++QLK+L +RNC+L+
Sbjct: 328 FYGNYMQGSFSLSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLIVRNCNLN 387

Query: 184 -----ALPSFLLHQLDLRFIDLSHNKLQGTFPS-WLLQNNTKLDTLYLLNNSLSGNFQLP 237
                 +P+FL +Q +L ++ LS N + G+ PS WL+ N+                    
Sbjct: 388 KDEGSVIPTFLSYQYNLVYLVLSSNNINGSLPSNWLIHND-------------------- 427

Query: 238 SSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDL 297
               D++ +DIS+N  SG LP ++G  LP +  LN S N FE  IPSS+ +MK+L+ LD 
Sbjct: 428 ----DMIYLDISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQLLDF 483

Query: 298 SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQDG 356
           S N+FSGELP+Q  +GC +L +L LS+N L G +  F NS N+  L+LNNN+FSG ++D 
Sbjct: 484 SQNHFSGELPKQLATGCDNLQYLKLSNNFLHGNIPRFCNSVNMFGLFLNNNNFSGTLEDV 543

Query: 357 LSKATSLLELDLSNNMLYGQIPHWFGNLSG------------------------LQFLDI 392
           L   T L  L +SNN   G IP   G  S                         LQ LD+
Sbjct: 544 LGNNTRLETLSISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPIEISSIWRLQILDL 603

Query: 393 SENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI 452
           S+N+L+GS+P    L+ LR LY+  N  +GSIP  L     L +LDLR+N+FSG IP W+
Sbjct: 604 SQNKLNGSIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENKFSGKIPNWM 663

Query: 453 NEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAA 512
           ++FS L +LLL GN  +G IP QLC L  +NI+DLS N  N  IP CF N+         
Sbjct: 664 DKFSELRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNMLFGMRQYVD 723

Query: 513 GSFVLWETT--QRISTEFEAYYNSTLELS---EVKHFYKASGQRGIEFMTKKRYESYKGD 567
             F L      Q I  +   +++S+L +    E     +      +EF TK     YKG 
Sbjct: 724 AVFDLSSILYGQHIQ-DTHYFFDSSLSIDLPLEKDQLIEDLLHLEVEFRTKHYEYFYKGK 782

Query: 568 ILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSH 627
           +L  MTGLD SCN+LTG IPS+IG L +IRALNLSHN LSG IP + SNL  IESLDLS+
Sbjct: 783 VLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIESLDLSY 842

Query: 628 NDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSC 687
           NDLSG+IP +LT+LNFLS FNVSYN+LSG  P+ GQFANFDE NY GN  LCGP +++ C
Sbjct: 843 NDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGPLLSRKC 902

Query: 688 TTVLEPPETPSDGAEEDESAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYFID 747
             V  PP + S+  EE+E+ VDM+ FYWSF AS +T++L    +L +N  WR  WFY+I 
Sbjct: 903 ERVEPPPSSQSNDNEEEETGVDMITFYWSFTASYITILLAFITVLCINPRWRMAWFYYIS 962

Query: 748 AYID 751
            +++
Sbjct: 963 KFMN 966

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 328/724 (45%), Positives = 439/724 (60%), Gaps = 64/724 (8%)

Query: 67  GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 126
           G+C  K LVELD+SKN     L  CLSNLT+++VL+LS+N  +GN  S I+N+ SL YLS
Sbjct: 268 GLCNFKDLVELDISKNMFSAKLPDCLSNLTNLRVLELSNNLFSGNFPSFISNLTSLAYLS 327

Query: 127 LDDNNFEGSFSFNSLKNHSKLQVFKLS---NSLVKIETEEFPGLPEYQLKALNLRNCSLH 183
              N  +GSFS ++L NHS L+V  +S   N  V IETE+    P++QLK+L +RNC+L+
Sbjct: 328 FYGNYMQGSFSLSTLANHSNLEVLYISSKNNIGVDIETEKTKWFPKFQLKSLIVRNCNLN 387

Query: 184 -----ALPSFLLHQLDLRFIDLSHNKLQGTFPS-WLLQNNTKLDTLYLLNNSLSGNFQLP 237
                 +P+FL +Q +L ++ LS N + G+ PS WL+ N+                    
Sbjct: 388 KDEGSVIPTFLSYQYNLVYLVLSSNNINGSLPSNWLIHND-------------------- 427

Query: 238 SSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDL 297
               D++ +DIS+N  SG LP ++G  LP +  LN S N FE  IPSS+ +MK+L+ LD 
Sbjct: 428 ----DMIYLDISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQLLDF 483

Query: 298 SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQDG 356
           S N+FSGELP+Q  +GC +L +L LS+N L G +  F NS N+  L+LNNN+FSG ++D 
Sbjct: 484 SQNHFSGELPKQLATGCDNLQYLKLSNNFLHGNIPRFCNSVNMFGLFLNNNNFSGTLEDV 543

Query: 357 LSKATSLLELDLSNNMLYGQIPHWFGNLSG------------------------LQFLDI 392
           L   T L  L +SNN   G IP   G  S                         LQ LD+
Sbjct: 544 LGNNTRLETLSISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPIEISSIWRLQILDL 603

Query: 393 SENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI 452
           S+N+L+GS+P    L+ LR LY+  N  +GSIP  L     L +LDLR+N+FSG IP W+
Sbjct: 604 SQNKLNGSIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENKFSGKIPNWM 663

Query: 453 NEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAA 512
           ++FS L +LLL GN  +G IP QLC L  +NI+DLS N  N  IP CF N+         
Sbjct: 664 DKFSELRVLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNMLFGMRQYVD 723

Query: 513 GSFVLWETT--QRISTEFEAYYNSTLELS---EVKHFYKASGQRGIEFMTKKRYESYKGD 567
             F L      Q I  +   +++S+L +    E     +      +EF TK     YKG 
Sbjct: 724 AVFDLSSILYGQHIQ-DTHYFFDSSLSIDLPLEKDQLIEDLLHLEVEFRTKHYEYFYKGK 782

Query: 568 ILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSH 627
           +L  MTGLD SCN+LTG IPS+IG L +IRALNLSHN LSG IP + SNL  IESLDLS+
Sbjct: 783 VLENMTGLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIESLDLSY 842

Query: 628 NDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSC 687
           NDLSG+IP +LT+LNFLS FNVSYN+LSG  P+ GQFANFDE NY GN  LCGP +++ C
Sbjct: 843 NDLSGKIPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGPLLSRKC 902

Query: 688 TTVLEPPETPSDGAEEDESAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYFID 747
             V  PP + S+  EE+E+ VDM+ FYWSF AS +T++L    +L +N  WR  WFY+I 
Sbjct: 903 ERVEPPPSSQSNDNEEEETGVDMITFYWSFTASYITILLAFITVLCINPRWRMAWFYYIS 962

Query: 748 AYID 751
            +++
Sbjct: 963 KFMN 966

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	764
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.878	0.738	0.438	3.9e-140
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.880	0.719	0.379	1.1e-105
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.770	0.610	0.391	9.4e-98
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.861	0.658	0.380	1.1e-96
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.869	0.680	0.360	1.7e-91
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.836	0.590	0.366	1.2e-90
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.756	0.648	0.382	9.9e-87
TAIR|locus:2094613	784	RLP38 "receptor like protein 3	0.850	0.829	0.314	1.1e-69
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.845	0.796	0.311	4e-67
TAIR|locus:2096339	786	RLP30 "receptor like protein 3	0.818	0.795	0.318	5.2e-65

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 1371 (487.7 bits), Expect = 3.9e-140, P = 3.9e-140
 Identities = 305/695 (43%), Positives = 409/695 (58%)

Query:    69 CELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 128
             CE+K L ELDL   N  G L  C  NL  ++ LDLSSNQLTGN+    ++++SLEYLSL 
Sbjct:   217 CEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLS 276

Query:   129 DNNFEGSFSFNSLKNHSKLQVFKLSNS--LVKIETEEFPGLPEYQLKALNLRNCSLHALP 186
             DN+FEG FS N L N +KL+VF  S+   +V+++ E     P +QL  L LR CSL  +P
Sbjct:   277 DNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKIES-TWQPLFQLSVLVLRLCSLEKIP 335

Query:   187 SFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRI 246
             +FL++Q +L  +DLS N++ G  P+WLL+NN +L+ L L NNS +  FQ+P+S H+L  +
Sbjct:   336 NFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQMPTSVHNLQVL 394

Query:   247 DISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIPSSMSEMKRLESLDLSSNNFSGEL 306
             D S N   G  P N G++LP          GF+   PSSM EM  +  LDLS NN SGEL
Sbjct:   395 DFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISFLDLSYNNLSGEL 454

Query:   307 PRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTN---LCWLYLNNNHFSGKIQDGLSKATSL 363
             P+                N   G  + P  TN   L  L +NNN F+GKI  GL     L
Sbjct:   455 PQSFVSSCFSLSILQLSHNKFSGHFL-PRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDL 513

Query:   364 LELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGS 423
               LD+SNN L G++P        L FLD+S N LSG++PS  +L ++  L++H N F G 
Sbjct:   514 CILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALPSHVSLDNV--LFLHNNNFTGP 571

Query:   424 IPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLN 483
             IP       S+ +LDLR+N+ SG+IP +++    +  LLLRGN L G IP+ LC  S + 
Sbjct:   572 IPDTFL--GSIQILDLRNNKLSGNIPQFVDTQD-ISFLLLRGNSLTGYIPSTLCEFSKMR 628

Query:   484 ILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVL-WETTQRISTEFEAYYNSTLELSEVK 542
             +LDLS NK NG IP CF N++    G A    +  +     + + +  +Y ST  +   +
Sbjct:   629 LLDLSDNKLNGFIPSCFNNLSF---GLARKEEITNYYVAVALESFYLGFYKSTFVVENFR 685

Query:   543 HFYKASGQRGIEFMTKKRYESYKGDI------LNYMTGLDFSCNELTGDIPSEIGSLSEI 596
               Y    +  ++F TK+RY+SY G        LN M GLD S NEL+G IP+E+G L ++
Sbjct:   686 LDYSNYFEIDVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKL 745

Query:   597 RALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSG 656
             RALNLSHNFLS  IP S S L+ IESLDLS+N L G IP QLT L  L+ FNVSYN+LSG
Sbjct:   746 RALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLSG 805

Query:   657 PTPNAGQFANFDEQNYGGNSGLCGPRINKSCTTVLEPPETPSDGAEED-ESAVDMVAFYW 715
               P   QF  FDE +Y GN  LCGP  + SC T     E  + G E+D E A+DM+ FYW
Sbjct:   806 IIPQGKQFNTFDENSYLGNPLLCGPPTDTSCETKKNSEENANGGEEDDKEVAIDMLVFYW 865

Query:   716 SFVASSVTVILGLFAILWVNSYWRRLWFYFIDAYI 750
             S   + VT ++G+  ++ V+  WRR W   +DA+I
Sbjct:   866 STAGTYVTALIGILVLMCVDCSWRRAWLRLVDAFI 900

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1046 (373.3 bits), Expect = 1.1e-105, P = 1.1e-105
 Identities = 270/711 (37%), Positives = 401/711 (56%)

Query:    58 VPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA 117
             +P+ VF     C+LK L +LDL  N+  G +  CL +L  ++VLDLSSNQL+G+L S  +
Sbjct:   237 IPIEVF-----CKLKNLRDLDLKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLPSSFS 291

Query:   118 NIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQ--LKAL 175
             +++SLEYLSL DNNF+GSFS N L N + L+   +   L     E+ P    YQ  L+ +
Sbjct:   292 SLESLEYLSLSDNNFDGSFSLNPLTNLTNLKFVVV---LRFCSLEKIPSFLLYQKKLRLV 348

Query:   176 NLRNCSLHA-LPSFLL-HQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGN 233
             +L + +L   +P++LL +  +L  + L +N     FP   + +N ++   +  NN   G 
Sbjct:   349 DLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPIPTMVHNLQIFD-FSANNI--GK 404

Query:   234 F--QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIPSS-MSEMK 290
             F  ++  +  +L+R++ S+N F G  P ++G+ +            F  ++P S ++   
Sbjct:   405 FPDKMDHALPNLVRLNGSNNGFQGYFPTSIGE-MKNISFLDLSYNNFSGKLPRSFVTGCV 463

Query:   291 RLESLDLSSNNFSGE-LPRQXXXXXXXXXXXXXXDNHL-QGEVV--FPNSTNLCWLYLNN 346
              +  L LS N FSG  LPR+              DN+L  G +     NST L  L ++N
Sbjct:   464 SIMFLKLSHNKFSGRFLPRETNFPSLDVLRM---DNNLFTGNIGGGLSNSTMLRILDMSN 520

Query:   347 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFN 406
             N  SG I   L +   L  + +SNN L G IP     +  L FLD+S NQ SG++PS  +
Sbjct:   521 NGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSFLDLSGNQFSGALPSHVD 580

Query:   407 LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGN 466
                   +++H N F G IP  L +S  + +LDLR+N+ SGSIP + ++   + ILLL+GN
Sbjct:   581 SELGIYMFLHNNNFTGPIPDTLLKS--VQILDLRNNKLSGSIPQF-DDTQSINILLLKGN 637

Query:   467 QLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRIST 526
              L G+IP +LC LS + +LDLS NK NG IP C +N++   L + A +  +  +  + S 
Sbjct:   638 NLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRLQEDAMALNIPPSFLQTSL 697

Query:   527 EFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKG------DILNYMTGLDFSCN 580
             E E Y  ST  + +++       +  I+F  K+RY+SY G       IL  M G+D S N
Sbjct:   698 EMELY-KSTFLVDKIEVDRSTYQETEIKFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNN 756

Query:   581 ELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTE 640
             EL+G IP+E+G L ++R LNLSHN L GSIP S S L  +ESLDLSHN L G IP  L+ 
Sbjct:   757 ELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSS 816

Query:   641 LNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTTVLEPPETPSDG 700
             L  L+ F+VS N+LSG  P   QF  F+E++Y GN  LCGP  ++SC T   P E  +  
Sbjct:   817 LTSLAVFDVSSNNLSGIIPQGRQFNTFEEESYLGNPLLCGPPTSRSCETNKSPEEADNGQ 876

Query:   701 AEEDE-SAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYFIDAYI 750
              EED+ +A+DM+ FY+S  +  VT ++G+  ++  +  WRR W   +DA+I
Sbjct:   877 EEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPWRRAWLRIVDAFI 927

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
 Identities = 242/618 (39%), Positives = 347/618 (56%)

Query:    64 VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 123
             + +GICEL  + ELDLS+N L GHL  CL++LT ++VLDLSSN+LTG + S + +++SLE
Sbjct:   236 IQSGICELNNMQELDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLE 295

Query:   124 YLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIET-EEFPGLPEYQLKALNLRNCSL 182
             YLSL DN+FEGSFSF SL N S L V KL +    ++   E    P++QL  + LR+C++
Sbjct:   296 YLSLFDNDFEGSFSFGSLANLSNLMVLKLCSKSSSLQVLSESSWKPKFQLSVIALRSCNM 355

Query:   183 HALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD 242
               +P FLLHQ DLR +DLS N + G  PSWLL NNTKL  L LL N+L  +FQ+P S H+
Sbjct:   356 EKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKLKVL-LLQNNLFTSFQIPKSAHN 414

Query:   243 LLRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIPSSMSEMKRLESLDLSSNNF 302
             LL +D+S N F+   P N+G I P           F+  +PSS+  M  ++ +DLS N+F
Sbjct:   415 LLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQENLPSSLGNMNGIQYMDLSRNSF 474

Query:   303 SGELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTN---LCWLYLNNNHFSGKIQDGLSK 359
              G LPR                N L GE+ FP STN   +  L+++NN F+GKI  GL  
Sbjct:   475 HGNLPRSFVNGCYSMAILKLSHNKLSGEI-FPESTNFTNILGLFMDNNLFTGKIGQGLRS 533

Query:   360 ATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSS-FNLSSLRRLYMHMN 418
               +L  LD+SNN L G IP W G L  L  L IS+N L G +P S FN SSL+ L +  N
Sbjct:   534 LINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSAN 593

Query:   419 AFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCH 478
             + +G IP     S +  VL L+DN+ SG+IP  +   + + IL LR N+  G IP +  +
Sbjct:   594 SLSGVIPPQ-HDSRNGVVLLLQDNKLSGTIPDTL--LANVEILDLRNNRFSGKIP-EFIN 649

Query:   479 LSLLNILDLSYNKFNGPIP--VC-FANVTLWTLG--QAAGSF--VLWETTQRISTEFEAY 531
             +  ++IL L  N F G IP  +C  +N+ L  L   +  G+    L  T+     E  +Y
Sbjct:   650 IQNISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSY 709

Query:   532 -YNSTLEL-SEVKH-F-----YKASGQRGIEFMTKKRYESYKGDI-LNYMTGLDFSCNEL 582
              Y+  +   S+V + F     + ++   GI F +    +    D      T ++F+    
Sbjct:   710 DYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKAATQTKIEFATKHR 769

Query:   583 TGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELN 642
                     G+L  +  ++LS N LSG IP     L  + +L+LSHN+LSG IP  ++ + 
Sbjct:   770 YDAYMG--GNLKLLFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSME 827

Query:   643 FLSNFNVSYNHLSGPTPN 660
              + +F++S+N L G  P+
Sbjct:   828 KMESFDLSFNRLQGRIPS 845

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 268/705 (38%), Positives = 381/705 (54%)

Query:    68 ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQ-SVIANIKSLEYLS 126
             +  L  L  LDLS N L G++   L+NL  ++ L L  N   G     ++AN+  L+ L 
Sbjct:   278 LTSLTGLRVLDLSSNQLTGNVPSALANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLR 337

Query:   127 LDD--NNFEGSFSFNSLKNHSKLQVFKL-SNSLVKIETEEFPGLPEYQLKALNLRNCSLH 183
             LD   N+ E  F   S K   +L V  L S +L K+    F  L +  L  ++L +  +H
Sbjct:   338 LDSQSNSLEVEFE-TSWKPKFQLVVIALRSCNLEKVP--HFL-LHQKDLHHVDLSDNQIH 393

Query:   184 A-LPSFLL-HQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYL------LNNSLSGNFQ 235
                PS+LL +   L  + L +N    +F S+ L  +   + L+L       N+    NF 
Sbjct:   394 GNFPSWLLENNTKLEVLLLQNN----SFTSFQLPKSAH-NLLFLNVSVNKFNHLFLQNFG 448

Query:   236 --LPSSKHDLLRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIPSS-MSEMKRL 292
               LP   H L+ +++++N F G LP ++   +            F  ++P   +     L
Sbjct:   449 WILP---H-LVCVNLAYNGFQGNLPSSLDN-MKSIEFLDLSHNRFHGKLPRRFLKGCYNL 503

Query:   293 ESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHL-QGEVV--FPNSTNLCWLYLNNNHF 349
               L LS N  SGE+  +              DN+L  G +   F +  +L  L ++NN  
Sbjct:   504 TILKLSHNKLSGEVFPEAANFTRLWVMSM--DNNLFTGNIGKGFRSLPSLNVLDISNNKL 561

Query:   350 SGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSS 409
             +G I   + +   L  L LSNNML G+IP    N+S LQ LD+S N+LSG +P   ++SS
Sbjct:   562 TGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPP--HVSS 619

Query:   410 LRR---LYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGN 466
             +     L +  N  +G IP  L  +  + VLDLR+N+ SG++P +IN  + + ILLLRGN
Sbjct:   620 IYHGAVLLLQNNNLSGVIPDTLLLN--VIVLDLRNNRLSGNLPEFINTQN-ISILLLRGN 676

Query:   467 QLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRIST 526
                G IP+Q C LS + +LDLS NKFNG IP C +N T + L +   S+  ++   R  T
Sbjct:   677 NFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSN-TSFGLRKGDDSY-RYDVPSRFGT 734

Query:   527 EFE-AYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGD 585
               +  Y+ S L + E     + + Q  IEF TK RY++Y G  L  + G+D S NEL+G+
Sbjct:   735 AKDPVYFESLLMIDEFNMVNETNSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGE 794

Query:   586 IPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLS 645
             IP E+G L E+ ALNLSHN LSG I +S S LK +ESLDLS N L G IP QLT++  L+
Sbjct:   795 IPVELGGLVELEALNLSHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLA 854

Query:   646 NFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTTVLEPPETPSDGAEEDE 705
              FNVSYN+LSG  P   QF  F+ Q+Y GN  LCG  I+ SC +    P    +G E DE
Sbjct:   855 VFNVSYNNLSGIVPQGRQFNTFETQSYFGNPLLCGKSIDISCASNNFHPT--DNGVEADE 912

Query:   706 SAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYFIDAYI 750
             S VDM +FYWSFVA+ VT++LG+ A L  +S W R WFY +DA++
Sbjct:   913 STVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAWFYIVDAFV 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
 Identities = 256/710 (36%), Positives = 379/710 (53%)

Query:    68 IC--ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQ-SVIANIKSLEY 124
             +C   L KL  LDLS N L G+L    ++L  ++ L LS N   G    + +AN+  L+ 
Sbjct:   278 VCLGNLNKLRVLDLSSNQLSGNLPASFNSLESLEYLSLSDNNFEGFFSLNPLANLTKLKV 337

Query:   125 LSLDDNNFEGSFSFNSLKNHSK-LQVFKLSNSLVKI-ETEEFPGLPEYQ--LKALNLRNC 180
               L   +         ++  S  L  F+L+ + +      + P    YQ  L+ ++L + 
Sbjct:   338 FRLSSTS-----EMLQVETESNWLPKFQLTVAALPFCSLGKIPNFLVYQTNLRLVDLSSN 392

Query:   181 SLHA-LPSFLL-HQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPS 238
              L   +P++LL +  +L+ + L +N     F    + +  KL  L    N ++G   LP 
Sbjct:   393 RLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVH--KLQVLDFSANDITG--VLPD 447

Query:   239 S-KH---DLLRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIPSSM-SEMKRLE 293
             +  H    LL ++ SHN F G LP +MG+ +            F   +P S+ +    L 
Sbjct:   448 NIGHVLPRLLHMNGSHNGFQGNLPSSMGE-MNDISFLDLSYNNFSGELPRSLLTGCFSLI 506

Query:   294 SLDLSSNNFSGE-LPRQXXXXXXXXXXXXXXDNHLQGEVVFPNST--NLCWLYLNNNHFS 350
             +L LS N+FSG  LP Q              +N   GE+     T  NL     +NN  +
Sbjct:   507 TLQLSHNSFSGPILPIQTRLTSLIVLRMH--NNLFTGEIGVGLRTLVNLSIFDASNNRLT 564

Query:   351 GKIQDGLSKATS-LLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSS 409
             G I   +   +S L+ L LSNN+L G +P     +  L FLD+S N LSG +PSS  ++S
Sbjct:   565 GLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSV-VNS 623

Query:   410 LR--RLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQ 467
             +   ++++H N+F G +P  L  ++   +LDLR+N+ SGSIP ++N    +  LLLRGN 
Sbjct:   624 MYGIKIFLHNNSFTGPLPVTLLENAY--ILDLRNNKLSGSIPQFVNTGKMI-TLLLRGNN 680

Query:   468 LKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAG-SFVLWETTQRIST 526
             L G+IP +LC L+ + +LDLS NK NG IP C  +++   LG+  G S    E +   S 
Sbjct:   681 LTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLST-ELGEGIGLSGFSQEISFGDSL 739

Query:   527 EFEAYYNSTLELSEVKHFYKASGQR-GIEFMTKKRYESYKGDILNYMTGLDFSCNELTGD 585
             + E +Y ST  + E   +Y ++     IEF  K+RY+S+ G  L+YM GLD S NEL+G 
Sbjct:   740 QME-FYRSTFLVDEFMLYYDSTYMIVEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGV 798

Query:   586 IPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLS 645
             IP+E+G LS++RALNLS N LS SIP + S LK IESLDLS+N L G IP QLT L  L+
Sbjct:   799 IPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLA 858

Query:   646 NFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTTVLEPPETPSDGAEE-- 703
              FNVS+N+LSG  P  GQF  F++ +Y GN  LCG   ++SC       E  + G EE  
Sbjct:   859 VFNVSFNNLSGIIPQGGQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEE 918

Query:   704 ---DESAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYFIDAYI 750
                DE+A+DMV  YW+  ++    ++G+  ++  +  WRR W   +DA+I
Sbjct:   919 DDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLCIVDAFI 968

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 249/679 (36%), Positives = 360/679 (53%)

Query:     9 RINFRLCVQIIEHVWSPIIKKPQE--LWHKFFPKGS--ITDFSVEDSCR----KTSGVPL 60
             R +FR  VQ +E +W  +    Q     HK    G        +  S +    K + + L
Sbjct:   287 RFDFREVVQKVETLWIGLRLSFQMSITHHKSVTVGGNGFLGLEIPTSLQVLDFKRNQLSL 346

Query:    61 TVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIK 120
             T     GIC L KL ELDLS N L   L  CL NLTH++ LDLS+NQL GNL S ++ + 
Sbjct:   347 THEGYLGICRLMKLRELDLSSNALTS-LPYCLGNLTHLRTLDLSNNQLNGNLSSFVSGLP 405

Query:   121 S-LEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSL--VKIETEEFPGLPEYQLKALNL 177
             S LEYLSL DNNF+GSF FNSL N ++L VFKLS+ +  ++++TE     P +QLK L L
Sbjct:   406 SVLEYLSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTES-SWAPLFQLKMLYL 464

Query:   178 RNCSLHA-LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQL 236
              NCSL + +  FL+HQ DL F+DLSHNKL GTFP+WL++NNT+L T+ L  NSL+   QL
Sbjct:   465 SNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQL 523

Query:   237 PSSKHDLLRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIPSSMSEMKRLESLD 296
             P   H L  +DIS N     +  ++G + P           F+  IPSS+ EMK L+ LD
Sbjct:   524 PILVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLD 583

Query:   297 LSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQ 354
             +SSN   G+LP                +N LQG++     N T L  L+L+ N+F+G ++
Sbjct:   584 MSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLE 643

Query:   355 DGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLY 414
             +GL K+ +L  LD+S+N   G +P W G +S L +L +S NQL G  P       +  + 
Sbjct:   644 EGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPFLRQSPWVEVMD 703

Query:   415 MHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPN 474
             +  N+F+GSIP  +    SL  L L++N+F+G +P  + + + L +L LR N   G I N
Sbjct:   704 ISHNSFSGSIPRNVN-FPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKILN 762

Query:   475 QLCHLSLLNILDLSYNKFNGPIP--VC-FANVTLWTLGQAAGSFVLWETTQRISTEFEAY 531
              +   S L IL L  N F   IP  +C  + V L  L        +     ++S  F A 
Sbjct:   763 TIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMS--FGAE 820

Query:   532 YNS-TLEL-SEVKHFY-------KASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNEL 582
              N  T+ L ++    Y       +      ++   +  Y+     +++++T   +   + 
Sbjct:   821 QNDRTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQ- 879

Query:   583 TGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELN 642
              GDI      L  +  L+LS N LSG IP  + +L+ I SL+LS N L+G IP  +++L 
Sbjct:   880 -GDI------LRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLK 932

Query:   643 FLSNFNVSYNHLSGPTPNA 661
              L + ++S N L G  P A
Sbjct:   933 GLESLDLSNNKLDGSIPPA 951

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 234/612 (38%), Positives = 332/612 (54%)

Query:    67 GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 126
             GIC L++L EL LS+N   G +  C S  + ++VLDLSSN L+G +   I++ KS+EYLS
Sbjct:   173 GICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYFISDFKSMEYLS 232

Query:   127 LDDNNFEGSFSFNSLKNHSKLQVFKLSNS---LVKIETEEFPGLPEYQLKALNLRNCSLH 183
             L DN+FEG FS   +   ++L+VFKLS+    L  +ET    GL + QL ++ L +C+L 
Sbjct:   233 LLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGL-QSQLSSIMLSHCNLG 291

Query:   184 ALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 243
              +P FL +Q +LR IDLS+N L G FP+WLL+NNT+L  L L NNS      LP +   L
Sbjct:   292 KIPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSFK-TLTLPRTMRRL 350

Query:   244 LRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIPSSMSEMKRLESLDLSSNNFS 303
               +D+S N F+ QLP ++G IL            F   +PSSM+ M+ +E +DLS NNFS
Sbjct:   351 QILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNFS 410

Query:   304 GELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNS--TNLCWLYLNNNHFSGKIQDGLSKAT 361
             G+LPR                N   G ++  +S  T+L  L ++NN F+GKI   L    
Sbjct:   411 GKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNLR 470

Query:   362 SLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSS-FNLSSLRRLYMHMNAF 420
              L  +DLSNN+L G IP W GN   L+ L IS N+L G++P S FN+  L  L +  N  
Sbjct:   471 MLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNFL 529

Query:   421 NGSIPGALRRSSSLT-VLDLRDNQFSGSIP--IWINEFSYLGILLLRGNQLKGNIPNQLC 477
             +GS+P  LR SS    +LDL +N  +GSIP  +W      L +L LR N+L GNIP    
Sbjct:   530 SGSLP--LRSSSDYGYILDLHNNNLTGSIPDTLWYG----LRLLDLRNNKLSGNIPLFRS 583

Query:   478 HLSLLNILDLSYNKFNGPIPV--C-FANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNS 534
               S+  +L L  N   G IPV  C  +NV +           L E+     T     + S
Sbjct:   584 TPSISVVL-LRENNLTGKIPVELCGLSNVRMLDFAHNR----LNESIPSCVTNLS--FGS 636

Query:   535 TLELSEVKHFYKASGQRG-IEFMTKKRYESY-KGDILNYMTGLDFSCN-ELTGDIPSEI- 590
                 +    +Y AS     +E  T+  YES    D  +    +DF+   E       ++ 
Sbjct:   637 GGHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQVEFAVKQRYDLY 696

Query:   591 --GSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFN 648
               G+L+++  L+LS N LSG+IP+ L +LK + SL+LS N LSG IP   + L  + + +
Sbjct:   697 MRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLD 756

Query:   649 VSYNHLSGPTPN 660
             +S+N L G  P+
Sbjct:   757 LSFNKLHGTIPS 768

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2094613 RLP38 "receptor like protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 223/708 (31%), Positives = 338/708 (47%)

Query:    65 NTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEY 124
             ++ + +L+ L  LDLS  NL G +   + NL+H+  LDLS+N L G + + I N+  LEY
Sbjct:   103 SSALFKLQHLTHLDLSNCNLQGEIPSSIENLSHLTHLDLSTNHLVGEVPASIGNLNQLEY 162

Query:   125 LSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPG--LPEYQLKALNLRNCSL 182
             + L  N+  G+    S  N +KL       SL+ +    F G  +    L +L + + S 
Sbjct:   163 IDLRGNHLRGNIP-TSFANLTKL-------SLLDLHENNFTGGDIVLSNLTSLAILDLSS 214

Query:   183 HALPSFL------LHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSG--NF 234
             +   SF       LH L+  F +   N   G FP+ LL+ ++ LD + L  N   G  +F
Sbjct:   215 NHFKSFFSADLSGLHNLEQIFGN--ENSFVGLFPASLLKISS-LDKIQLSQNQFEGPIDF 271

Query:   235 QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIPSSMSEMKRLES 294
                SS   L  +DISHN F G++P ++ K++            F    P S+S++  L S
Sbjct:   272 GNTSSSSRLTMLDISHNNFIGRVPSSLSKLV-NLELLDLSHNNFRGLSPRSISKLVNLTS 330

Query:   295 LDLSSNNFSGELP----RQXXXXXXXXXXXXXXDNHLQGEVVFPNSTNLCWLYLNNNHFS 350
             LD+S N   G++P    +               D     EVV  N   L  L L +N   
Sbjct:   331 LDISYNKLEGQVPYFIWKPSNLQSVDLSHNSFFDLGKSVEVV--NGAKLVGLNLGSNSLQ 388

Query:   351 GKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPS-SFNLSS 409
             G I   +     +  LDLS+N   G IP    N +    L++  N LSG +P    + + 
Sbjct:   389 GPIPQWICNFRFVFFLDLSDNRFTGSIPQCLKNSTDFNTLNLRNNSLSGFLPELCMDSTM 448

Query:   410 LRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLK 469
             LR L +  N F G +P +L     +  L++R N+   + P W+     L +L+LR N   
Sbjct:   449 LRSLDVSYNNFVGKLPKSLMNCQDMEFLNVRGNKIKDTFPFWLGSRKSLMVLVLRSNAFY 508

Query:   470 GNIPNQLCHLSL--LNILDLSYNKFNGPIPV-CFANVTLWTLGQAAGSFVLWETTQRIST 526
             G + N   +L    L+I+D+S N F G +P   FAN   WT  + A    +W+   R++ 
Sbjct:   509 GPVYNSTTYLGFPRLSIIDISNNDFVGSLPQDYFAN---WT--EMA---TVWDIN-RLNY 559

Query:   527 EFEAYYNSTLELSEVKHFYKASGQRGIEF-MTKKRYE-SYKG---DILNYMTG---LDFS 578
                   + T++   ++   + S   G  F M     + +YKG   D      G   +DFS
Sbjct:   560 ARNTS-SRTIQYGGLQTIQR-SNYVGDNFNMHADSMDLAYKGVDTDFNRIFRGFKVIDFS 617

Query:   579 CNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQL 638
              N  +G IP  IG LSE+  LNLS N  +G+IP SL+N+  +E+LDLS N+LSG+IP  L
Sbjct:   618 GNRFSGHIPRSIGLLSELLHLNLSGNAFTGNIPPSLANITNLETLDLSRNNLSGEIPRSL 677

Query:   639 TELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCG-PRINKSCTTVLEPPETP 697
               L+FLSN N S+NHL G  P + QF   +  ++ GN GL G   I +    V  P    
Sbjct:   678 GNLSFLSNINFSHNHLQGFVPRSTQFGTQNCSSFVGNPGLYGLDEICRESHHVPVPTSQQ 737

Query:   698 SDGA--EEDESAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWF 743
              DG+  E +E  ++ +A   + +A    V  G F I  + + ++ LWF
Sbjct:   738 HDGSSSELEEPVLNWIA---AAIAFGPGVFCG-FVIGHIFTSYKHLWF 781

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 227/729 (31%), Positives = 349/729 (47%)

Query:    58 VPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA 117
             +P   FVN     L  L+ LD+  N   G +   L +LT+++ LDLS N + G L   I 
Sbjct:   121 IPGYAFVN-----LTSLISLDMCCNRFNGSIPHELFSLTNLQRLDLSRNVIGGTLSGDIK 175

Query:   118 NIKSLEYLSLDDNNFEGSF--SFNSLKNHSKLQVFK-LSNSLVKIETEEFPGLPEYQLKA 174
              +K+L+ L LD+N   G+      SL     L + + + NS +             +LK 
Sbjct:   176 ELKNLQELILDENLIGGAIPSEIGSLVELLTLTLRQNMFNSSIPSSVSRLT-----KLKT 230

Query:   175 LNLRNCSLHA-LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNS-LSG 232
             ++L+N  L + +P  + + ++L  + LS NKL G  PS  + N   L+TL L NN+ LSG
Sbjct:   231 IDLQNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGIPS-SIHNLKNLETLQLENNNGLSG 289

Query:   233 NFQLP----SSKHDLLRIDISHNKFSGQLPGNMGKILPXXXXXXXXXX--GFEVRIPSSM 286
                        K  +LR++  +NK       N G + P            G E  IP  +
Sbjct:   290 EIPAAWLFGLQKLKVLRLE-GNNKLQWN---NNGYVFPQFKLTHLSLRSCGLEGNIPDWL 345

Query:   287 SEMKRLESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGEVVFPN---STNLCWLY 343
                  L  LDLS N   G  P+               DN L G +  PN     +L +L 
Sbjct:   346 KNQTALVYLDLSINRLEGRFPKWLADLKIRNITLS--DNRLTGSLP-PNLFQRPSLYYLV 402

Query:   344 LNNNHFSGKIQD-----------------------GLSKATSLLELDLSNNMLYGQIPHW 380
             L+ N+FSG+I D                        ++K   L  LDLS N L G+ P  
Sbjct:   403 LSRNNFSGQIPDTIGESQVMVLMLSENNFSGSVPKSITKIPFLKLLDLSKNRLSGEFPR- 461

Query:   381 FGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLR 440
             F   S L++LDIS N+ SG VP+ F   S   L M  N F+G  P   R  S L  LDL 
Sbjct:   462 FRPESYLEWLDISSNEFSGDVPAYFG-GSTSMLLMSQNNFSGEFPQNFRNLSYLIRLDLH 520

Query:   441 DNQFSGSIPIWINEFSY-LGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVC 499
             DN+ SG++   I++ S  + +L LR N LKG+IP  + +L+ L +LDLS N  +G +P  
Sbjct:   521 DNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGISNLTSLKVLDLSENNLDGYLPSS 580

Query:   500 FANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTK- 558
               N+T            + ++ +  +     Y++S  ++  ++   +   +     +   
Sbjct:   581 LGNLTC-----------MIKSPEPSAMTIRPYFSSYTDIPNIERLIEIESEDIFSLVVNW 629

Query:   559 KRYESYKGDILNYM-TGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNL 617
             K  +    D   Y+ T LD S N+L G+IP+ +G+L  ++ LNLS+N  SG IPQS  +L
Sbjct:   630 KNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLNLSNNEFSGLIPQSFGDL 689

Query:   618 KMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQN-YGGNS 676
             + +ESLDLSHN+L+G+IP  L++L+ L+  ++  N L G  P + Q    +  N Y  NS
Sbjct:   690 EKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGRIPESPQLDRLNNPNIYANNS 749

Query:   677 GLCGPRINKSCTTVLEPPET--PSDGAEEDESAVDMVAFYWSFVASSVTVILG-LFAILW 733
             G+CG +I   C     P +T  P++  EE++   +   F W+  A+++    G L A+++
Sbjct:   750 GICGMQIQVPCF----PTQTKQPAEEKEEEDKEEEETIFSWN--AAAIGCSCGFLIAVVF 803

Query:   734 VNSYWRRLW 742
             + SY   LW
Sbjct:   804 M-SY-NELW 810

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2096339 RLP30 "receptor like protein 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 219/688 (31%), Positives = 321/688 (46%)

Query:    66 TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
             +G+ +L++L  L LS  +LYG ++  L NL+ +  LDLSSNQLTG + + ++ +  L  L
Sbjct:   105 SGLFKLQQLQNLTLSDCHLYGEVTSSLGNLSRLTHLDLSSNQLTGEVLASVSKLNQLRDL 164

Query:   126 SLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEY-QLKALNLR-NCSLH 183
              L +N+F G+    S  N +KL    +S++   +E   F  LP    L +LN+  N    
Sbjct:   165 LLSENSFSGNIP-TSFTNLTKLSSLDISSNQFTLENFSFI-LPNLTSLSSLNVASNHFKS 222

Query:   184 ALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSG--NFQLPSSKH 241
              LPS +    +L++ D+  N   GTFP+ L      L  +YL  N   G   F   SS  
Sbjct:   223 TLPSDMSGLHNLKYFDVRENSFVGTFPTSLF-TIPSLQIVYLEGNQFMGPIKFGNISSSS 281

Query:   242 DLLRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIPSSMSEMKRLESLDLSSNN 301
              L  ++++ NKF G          P               IP  +SE+  L  LDLS NN
Sbjct:   282 RLWDLNLADNKFDG----------P---------------IPEYISEIHSLIVLDLSHNN 316

Query:   302 FSGELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNST-NLCWLYLNNNHFS--GKIQDGLS 358
               G +P                +N L+GEV  P     L  + L++N F+  GK   G  
Sbjct:   317 LVGPIPTSISKLVNLQHLSLS-NNTLEGEV--PGCLWGLMTVTLSHNSFNSFGKSSSGAL 373

Query:   359 KATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSS--LRRLYMH 416
                S+ ELDL +N L G  PHW      L++LD+S N  +GS+P     S+  L+ L + 
Sbjct:   374 DGESMQELDLGSNSLGGPFPHWICKQRFLKYLDLSNNLFNGSIPPCLKNSTYWLKGLVLR 433

Query:   417 MNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQL 476
              N+F+G +P     +S L  LD+  N+  G +P  +   + + +L +  N +K   P+ L
Sbjct:   434 NNSFSGFLPDVFVNASMLLSLDVSYNRLEGKLPKSLINCTGMELLNVGSNIIKDTFPSWL 493

Query:   477 CHLSLLNILDLSYNKFNGP-----IPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAY 531
               L  L +L L  N F G      I   F ++ L  + Q   S  L   +    + +   
Sbjct:   494 VSLPSLRVLILRSNAFYGSLYYDHISFGFQHLRLIDISQNGFSGTL---SPLYFSNWREM 550

Query:   532 YNSTLEL--SEV--KHFYKASGQRGIEFMTKKRYES-YKG---DILN---YMTGLDFSCN 580
               S LE   S +  + +Y   G++G EF         YKG   D L    +   +DFS N
Sbjct:   551 VTSVLEENGSNIGTEDWYM--GEKGPEFSHSNSMTMIYKGVETDFLRIPYFFRAIDFSGN 608

Query:   581 ELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTE 640
                G+IP  +G L E+R LNLS N  + +IPQSL+NL  +E+LDLS N LSG IP  L  
Sbjct:   609 RFFGNIPESVGLLKELRLLNLSGNSFTSNIPQSLANLTNLETLDLSRNQLSGHIPRDLGS 668

Query:   641 LNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTTVLEPPETPSDG 700
             L+FLS  N S+N L GP P   QF +     +  N  L G  + K C     P  TP + 
Sbjct:   669 LSFLSTMNFSHNLLEGPVPLGTQFQSQHCSTFMDNLRLYG--LEKICGKAHAPSSTPLES 726

Query:   701 AEEDESAVDMVAFYWSFVASSVTVILGL 728
              E  E    ++ +  + +A    V  GL
Sbjct:   727 EEFSEPEEQVINWIAAAIAYGPGVFCGL 754

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.2__1688__AT1G74190.1 annotation not avaliable (966 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	764
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-68
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-58
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-46
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-41
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-26
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-09
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	8e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  243 bits (621), Expect = 2e-68
 Identities = 196/615 (31%), Positives = 292/615 (47%), Gaps = 82/615 (13%)

Query: 73  KLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNL-QSVIANIKSLEYLSLDDNN 131
           ++V +DLS  N+ G +S  +  L +I+ ++LS+NQL+G +   +     SL YL+L +NN
Sbjct: 70  RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129

Query: 132 FEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLH 191
           F GS    S+ N   L+   LSN+++   + E P                 + + SF   
Sbjct: 130 FTGSIPRGSIPN---LETLDLSNNML---SGEIP-----------------NDIGSF--- 163

Query: 192 QLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSS---KHDLLRIDI 248
              L+ +DL  N L G  P+  L N T L+ L L +N L G  Q+P        L  I +
Sbjct: 164 -SSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVG--QIPRELGQMKSLKWIYL 219

Query: 249 SHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPR 308
            +N  SG++P  +G  L  L  L+L  N     IPSS+  +K L+ L L  N  SG +P 
Sbjct: 220 GYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278

Query: 309 QFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL 366
                   L  L LSDN L GE+  +     NL  L+L +N+F+GKI   L+    L  L
Sbjct: 279 SIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337

Query: 367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIP 425
            L +N   G+IP   G  + L  LD+S N L+G +P    +  +L +L +  N+  G IP
Sbjct: 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Query: 426 GALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNIL 485
            +L    SL  + L+DN FSG +P    +   +  L +  N L+G I ++   +  L +L
Sbjct: 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457

Query: 486 DLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFY 545
            L+ NKF G +P  F +  L                              L+LS      
Sbjct: 458 SLARNKFFGGLPDSFGSKRL----------------------------ENLDLSR----N 485

Query: 546 KASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNF 605
           + SG    +  +           L+ +  L  S N+L+G+IP E+ S  ++ +L+LSHN 
Sbjct: 486 QFSGAVPRKLGS-----------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

Query: 606 LSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFA 665
           LSG IP S S + ++  LDLS N LSG+IP  L  +  L   N+S+NHL G  P+ G F 
Sbjct: 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFL 594

Query: 666 NFDEQNYGGNSGLCG 680
             +     GN  LCG
Sbjct: 595 AINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  213 bits (544), Expect = 3e-58
 Identities = 187/611 (30%), Positives = 282/611 (46%), Gaps = 97/611 (15%)

Query: 70  ELKKLVELDLSKNNLYGHLSP-------CL------SNLTHIKVLDLSSNQLTGNLQSVI 116
           EL+ L+    S N+   +LS        CL      +N + +  +DLS   ++G + S I
Sbjct: 30  ELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAI 89

Query: 117 ANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALN 176
             +  ++ ++L +N   G    +         +F  S+SL                    
Sbjct: 90  FRLPYIQTINLSNNQLSGPIPDD---------IFTTSSSL-------------------- 120

Query: 177 LRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQL 236
                              R+++LS+N   G+ P   + N   L+TL L NN LSG    
Sbjct: 121 -------------------RYLNLSNNNFTGSIPRGSIPN---LETLDLSNNMLSGEIPN 158

Query: 237 PSSKHDLLRI-DISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESL 295
                  L++ D+  N   G++P ++   L  L  L L+ N    +IP  + +MK L+ +
Sbjct: 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217

Query: 296 DLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKI 353
            L  NN SGE+P + + G  SL+ L L  N+L G +     N  NL +L+L  N  SG I
Sbjct: 218 YLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276

Query: 354 QDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRL 413
              +     L+ LDLS+N L G+IP     L  L+ L +  N  +G +P +  L+SL RL
Sbjct: 277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA--LTSLPRL 334

Query: 414 ---YMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKG 470
               +  N F+G IP  L + ++LTVLDL  N  +G IP  +     L  L+L  N L+G
Sbjct: 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394

Query: 471 NIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTL-WTLGQAAGSFVLWETTQRIST-EF 528
            IP  L     L  + L  N F+G +P  F  + L + L  +  +        RI++ ++
Sbjct: 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL-----QGRINSRKW 449

Query: 529 EAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPS 588
           +      L L+  K F    G     F +K+            +  LD S N+ +G +P 
Sbjct: 450 DMPSLQMLSLARNKFF----GGLPDSFGSKR------------LENLDLSRNQFSGAVPR 493

Query: 589 EIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFN 648
           ++GSLSE+  L LS N LSG IP  LS+ K + SLDLSHN LSGQIP   +E+  LS  +
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553

Query: 649 VSYNHLSGPTP 659
           +S N LSG  P
Sbjct: 554 LSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  178 bits (454), Expect = 1e-46
 Identities = 143/454 (31%), Positives = 216/454 (47%), Gaps = 59/454 (12%)

Query: 216 NNTKLDTLYLLNNSLSGN-----FQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLS 270
           N++++ ++ L   ++SG      F+LP     +  I++S+N+ SG +P ++      L  
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPY----IQTINLSNNQLSGPIPDDIFTTSSSLRY 122

Query: 271 LNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFS-LSFLSLSDNHLQG 329
           LNLS N F   IP     +  LE+LDLS+N  SGE+P     G FS L  L L  N L G
Sbjct: 123 LNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDI--GSFSSLKVLDLGGNVLVG 178

Query: 330 EV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGL 387
           ++     N T+L +L L +N   G+I   L +  SL  + L  N L G+IP+  G L+ L
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238

Query: 388 QFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSG 446
             LD+  N L+G +PSS  NL +L+ L+++ N  +G IP ++     L  LDL DN  SG
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298

Query: 447 SIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLW 506
            IP  + +   L IL L  N   G IP  L  L  L +L L  NKF+G IP         
Sbjct: 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK-------- 350

Query: 507 TLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKG 566
            LG+     VL  +T  ++ E          L    + +K                    
Sbjct: 351 NLGKHNNLTVLDLSTNNLTGEIPE------GLCSSGNLFKL------------------- 385

Query: 567 DILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLS 626
            IL       FS N L G+IP  +G+   +R + L  N  SG +P   + L ++  LD+S
Sbjct: 386 -IL-------FS-NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436

Query: 627 HNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPN 660
           +N+L G+I  +  ++  L   +++ N   G  P+
Sbjct: 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  161 bits (408), Expect = 7e-41
 Identities = 136/433 (31%), Positives = 188/433 (43%), Gaps = 79/433 (18%)

Query: 68  ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 127
           I  L  L  LDL  NNL G +   L NL +++ L L  N+L+G +   I +++ L  L L
Sbjct: 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291

Query: 128 DDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPS 187
            DN+  G                                +PE  ++  NL          
Sbjct: 292 SDNSLSGE-------------------------------IPELVIQLQNLE--------- 311

Query: 188 FLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRID 247
            +LH        L  N   G  P  L    T L  L +L        QL S         
Sbjct: 312 -ILH--------LFSNNFTGKIPVAL----TSLPRLQVL--------QLWS--------- 341

Query: 248 ISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELP 307
              NKFSG++P N+GK    L  L+LS N     IP  +     L  L L SN+  GE+P
Sbjct: 342 ---NKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Query: 308 RQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLE 365
           +  L  C SL  + L DN   GE+   F     + +L ++NN+  G+I        SL  
Sbjct: 398 KS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456

Query: 366 LDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSI 424
           L L+ N  +G +P  FG+   L+ LD+S NQ SG+VP    +LS L +L +  N  +G I
Sbjct: 457 LSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515

Query: 425 PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNI 484
           P  L     L  LDL  NQ SG IP   +E   L  L L  NQL G IP  L ++  L  
Sbjct: 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575

Query: 485 LDLSYNKFNGPIP 497
           +++S+N  +G +P
Sbjct: 576 VNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  128 bits (324), Expect = 2e-30
 Identities = 114/356 (32%), Positives = 158/356 (44%), Gaps = 56/356 (15%)

Query: 315 FSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNN-------NHFSGKIQDGLSKATSLLELD 367
             L+F  L    L+  + F +S N    YL+N         + G   +  S+  S+   D
Sbjct: 19  LFLNFSMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSI---D 75

Query: 368 LSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPS--SFNLSSLRRLYMHMNAFNGSIP 425
           LS   + G+I      L  +Q +++S NQLSG +P       SSLR L +  N F GSIP
Sbjct: 76  LSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP 135

Query: 426 GALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNIL 485
                  +L  LDL +N  SG IP  I  FS L +L L GN L G IPN L +L+ L  L
Sbjct: 136 RGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193

Query: 486 DLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFY 545
            L+ N+  G IP          LGQ      ++     +S E          L+ + H  
Sbjct: 194 TLASNQLVGQIPR--------ELGQMKSLKWIYLGYNNLSGEIP---YEIGGLTSLNH-- 240

Query: 546 KASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNF 605
                                        LD   N LTG IPS +G+L  ++ L L  N 
Sbjct: 241 -----------------------------LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271

Query: 606 LSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA 661
           LSG IP S+ +L+ + SLDLS N LSG+IP  + +L  L   ++  N+ +G  P A
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  116 bits (291), Expect = 1e-26
 Identities = 97/315 (30%), Positives = 134/315 (42%), Gaps = 56/315 (17%)

Query: 67  GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 126
            +  L +L  L L  N   G +   L    ++ VLDLS+N LTG +   + +  +L  L 
Sbjct: 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386

Query: 127 LDDNNFEGSFSFNSLKNHSKLQVFKL-SNSLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
           L  N+ EG     SL     L+  +L  NS       EF  LP                 
Sbjct: 387 LFSNSLEGEIP-KSLGACRSLRRVRLQDNSFSGELPSEFTKLPL---------------- 429

Query: 186 PSFLLHQLDLRFIDLSHNKLQGTFPS--WLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 243
                    + F+D+S+N LQG   S  W +     L  L L  N   G          L
Sbjct: 430 ---------VYFLDISNNNLQGRINSRKWDM---PSLQMLSLARNKFFGGLPDSFGSKRL 477

Query: 244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFS 303
             +D+S N+FSG +P  +G  L EL+ L LSEN     IP  +S  K+L SLDLS N  S
Sbjct: 478 ENLDLSRNQFSGAVPRKLGS-LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Query: 304 GELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSL 363
           G++P  F S    LS L LS N L                      SG+I   L    SL
Sbjct: 537 GQIPASF-SEMPVLSQLDLSQNQL----------------------SGEIPKNLGNVESL 573

Query: 364 LELDLSNNMLYGQIP 378
           +++++S+N L+G +P
Sbjct: 574 VQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 85.3 bits (211), Expect = 4e-17
 Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 2/112 (1%)

Query: 571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDL 630
           ++ GL      L G IP++I  L  ++++NLS N + G+IP SL ++  +E LDLS+N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 631 SGQIPPQLTELNFLSNFNVSYNHLSGPTPNA--GQFANFDEQNYGGNSGLCG 680
           +G IP  L +L  L   N++ N LSG  P A  G+  +    N+  N+GLCG
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.0 bits (187), Expect = 3e-14
 Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 342 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSV 401
           L L+N    G I + +SK   L  ++LS N + G IP   G+++ L+ LD+S N  +GS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 402 PSSF-NLSSLRRLYMHMNAFNGSIPGAL 428
           P S   L+SLR L ++ N+ +G +P AL
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 23/111 (20%)

Query: 366 LDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIP 425
           L L N  L G IP+    L  LQ +++S N + G++P S                 GSI 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL----------------GSIT 466

Query: 426 GALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQL 476
                   L VLDL  N F+GSIP  + + + L IL L GN L G +P  L
Sbjct: 467 S-------LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 4e-09
 Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 255 GQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGC 314
           G +P ++ K L  L S+NLS N     IP S+  +  LE LDLS N+F+G +P   L   
Sbjct: 432 GFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQL 489

Query: 315 FSLSFLSLSDNHLQGEV 331
            SL  L+L+ N L G V
Sbjct: 490 TSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 58.4 bits (141), Expect = 7e-09
 Identities = 68/209 (32%), Positives = 100/209 (47%), Gaps = 8/209 (3%)

Query: 286 MSEMKRLESLDLSSNNFSGELP-RQFLSGCFSLSFLSLSDNHLQGEVVF-PNSTNLCWLY 343
            S + RL SLDL S +    L   + L     L  L L+ N L+  +      TNL  L 
Sbjct: 63  PSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLD 122

Query: 344 LNNNHFSGKIQDGLSKATS-LLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVP 402
           L+NN+ +  I   +    S L ELDLS+N +   +P    NL  L+ LD+S N LS    
Sbjct: 123 LDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPK 180

Query: 403 SSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILL 462
              NLS+L  L +  N  +  +P  +   S+L  LDL +N     +   ++    L  L 
Sbjct: 181 LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLE 238

Query: 463 LRGNQLKGNIPNQLCHLSLLNILDLSYNK 491
           L  N+L+ ++P  + +LS L  LDLS N+
Sbjct: 239 LSNNKLE-DLPESIGNLSNLETLDLSNNQ 266

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 70/318 (22%), Positives = 104/318 (32%), Gaps = 73/318 (22%)

Query: 160 ETEEFPGLPEYQLKALNLRNCSLH-----ALPSFLLHQLDLRFIDLSHNKLQGTFPSWL- 213
            TE  P L    L+ L L   +L      AL S L  Q  L+ + LS N+          
Sbjct: 15  ATELLPKLL--CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQS 72

Query: 214 ----LQNNTKLDTLYLLNNSLS----GNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKIL 265
               L     L  L L +N+L     G  +       L  + +++N    +    + K L
Sbjct: 73  LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132

Query: 266 PELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF----SLSFLS 321
            +L                       LE L L  N   G      L+        L  L+
Sbjct: 133 KDLPP--------------------ALEKLVLGRNRLEGASCEA-LAKALRANRDLKELN 171

Query: 322 LSDNHLQGE------VVFPNSTNLCWLYLNNNHF----SGKIQDGLSKATSLLELDLSNN 371
           L++N +              + NL  L LNNN      +  + + L+   SL  L+L +N
Sbjct: 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231

Query: 372 MLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFN----GSIPGA 427
                      NL+      ++   LS +        SL  L +  N         +   
Sbjct: 232 -----------NLTDAGAAALASALLSPN-------ISLLTLSLSCNDITDDGAKDLAEV 273

Query: 428 LRRSSSLTVLDLRDNQFS 445
           L    SL  LDLR N+F 
Sbjct: 274 LAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 43/158 (27%), Positives = 61/158 (38%), Gaps = 49/158 (31%)

Query: 271 LNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE 330
           L L   G    IP+ +S+++ L+S++LS N+  G +P                       
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-------------------- 462

Query: 331 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFL 390
                               G I       TSL  LDLS N   G IP   G L+ L+ L
Sbjct: 463 --------------------GSI-------TSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495

Query: 391 DISENQLSGSVPSSFNLSSLRRLYMHM--NAFNGSIPG 426
           +++ N LSG VP++     L R   +   NA    IPG
Sbjct: 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 54.7 bits (132), Expect = 8e-08
 Identities = 69/277 (24%), Positives = 104/277 (37%), Gaps = 37/277 (13%)

Query: 70  ELKKLVELDLSKNNL-YGHLSPCLSNLTH---IKVLDLSSNQLTG---NLQSVIANIKS- 121
           +L  L  L L  N L         S L     +K L LS N+       LQS++  +   
Sbjct: 21  KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80

Query: 122 --LEYLSLDDNNF--EGSFSFNSLKNHSKLQVFKLSNSLVKIETEEF--PGLPEYQ--LK 173
             L+ L L DN    +G     SL   S LQ  KL+N+ +          GL +    L+
Sbjct: 81  CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140

Query: 174 ALNLRNCSLHALPSF-----LLHQLDLRFIDLSHNKLQGTFPSWLLQ---NNTKLDTLYL 225
            L L    L           L    DL+ ++L++N +       L +    N  L+ L L
Sbjct: 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200

Query: 226 LNNSLS--GNFQL---PSSKHDLLRIDISHNKFSGQ----LPGNMGKILPELLSLNLSEN 276
            NN L+  G   L    +S   L  +++  N  +      L   +      LL+L+LS N
Sbjct: 201 NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260

Query: 277 GFE----VRIPSSMSEMKRLESLDLSSNNFSGELPRQ 309
                    +   ++E + L  LDL  N F  E  + 
Sbjct: 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 88/354 (24%), Positives = 136/354 (38%), Gaps = 36/354 (10%)

Query: 92  LSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFK 151
            S+L+ +  LDL S     +L      +  L   SLD N      + + L   + L    
Sbjct: 63  PSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLD 122

Query: 152 L-SNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFP 210
           L +N++  I      GL +  LK L+L +  + +LPS L +  +L+ +DLS N L     
Sbjct: 123 LDNNNITDIPPL--IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL----- 175

Query: 211 SWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLS 270
                  + L  L    ++L+              +D+S NK S  LP  +   L   L 
Sbjct: 176 -------SDLPKLLSNLSNLN-------------NLDLSGNKIS-DLPPEIE--LLSALE 212

Query: 271 LNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE 330
                N   + + SS+S +K L  L+LS+N    E   + +    +L  L LS+N +   
Sbjct: 213 ELDLSNNSIIELLSSLSNLKNLSGLELSNNKL--EDLPESIGNLSNLETLDLSNNQISSI 270

Query: 331 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFL 390
               + TNL  L L+ N  S      L     LL   L N +L           S L   
Sbjct: 271 SSLGSLTNLRELDLSGNSLSN--ALPLIALLLLLLELLLNLLLT-LKALELKLNSILLNN 327

Query: 391 DISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQF 444
           +I  N  + S  +   L SL  L+   NA + S        +   +  L D   
Sbjct: 328 NILSNGETSSPEALSILESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLVK 381

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 64/238 (26%), Positives = 93/238 (39%), Gaps = 32/238 (13%)

Query: 73  KLVELDLSKNNLYGHLSPCLSNLTHI---KVLDLSSNQLTGNLQSVIA-----NIKSLEY 124
            L ELDLS N L       L +L      + L L++N L      ++A        +LE 
Sbjct: 82  GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141

Query: 125 LSLDDNNFEGSFSF---NSLKNHSKLQVFKLSNSLVKIE--TEEFPGLPEYQ-LKALNLR 178
           L L  N  EG+       +L+ +  L+   L+N+ +          GL     L+ L+L 
Sbjct: 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201

Query: 179 NCSLH-----ALPSFLLHQLDLRFIDLSHNKLQG----TFPSWLLQNNTKLDTLYLLNNS 229
           N  L      AL   L     L  ++L  N L         S LL  N  L TL L  N 
Sbjct: 202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261

Query: 230 L--SGNFQLP---SSKHDLLRIDISHNKFSGQLPGNMGKIL----PELLSLNLSENGF 278
           +   G   L    + K  LL +D+  NKF  +    + + L     EL SL + ++ F
Sbjct: 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 92/326 (28%), Positives = 138/326 (42%), Gaps = 41/326 (12%)

Query: 171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNN-- 228
            L  L+    S       LL+ L L  +DL+ N+L+      L    T L +L L NN  
Sbjct: 71  SLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELL--ELTNLTSLDLDNNNI 128

Query: 229 -SLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMS 287
             +     L  S    L  D+S NK    LP  +   LP L +L+LS N     +P  +S
Sbjct: 129 TDIPPLIGLLKSNLKEL--DLSDNKIE-SLPSPLRN-LPNLKNLDLSFNDLS-DLPKLLS 183

Query: 288 EMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNN 347
            +  L +LDLS N  S +LP   +    +L  L LS+N +                    
Sbjct: 184 NLSNLNNLDLSGNKIS-DLP-PEIELLSALEELDLSNNSII------------------- 222

Query: 348 HFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNL 407
               ++   LS   +L  L+LSNN L   +P   GNLS L+ LD+S NQ+S S+ S  +L
Sbjct: 223 ----ELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQIS-SISSLGSL 276

Query: 408 SSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQ 467
           ++LR L +  N+ + ++P  L     L +  L +   +    + +   S L    +  N 
Sbjct: 277 TNLRELDLSGNSLSNALP--LIALLLLLLELLLNLLLT-LKALELKLNSILLNNNILSNG 333

Query: 468 LKGNIPNQLCHLSLLNILDLSYNKFN 493
              + P  L  L  LN L    N  +
Sbjct: 334 ETSS-PEALSILESLNNLWTLDNALD 358

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 4e-07
 Identities = 24/72 (33%), Positives = 44/72 (61%)

Query: 63  FVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSL 122
           F+   I +L+ L  ++LS N++ G++ P L ++T ++VLDLS N   G++   +  + SL
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492

Query: 123 EYLSLDDNNFEG 134
             L+L+ N+  G
Sbjct: 493 RILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 5e-07
 Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 441 DNQ-FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIP 497
           DNQ   G IP  I++  +L  + L GN ++GNIP  L  ++ L +LDLSYN FNG IP
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 1e-06
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query: 72  KKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 131
           KKLV LDLS N L G +    S +  +  LDLS NQL+G +   + N++SL  +++  N+
Sbjct: 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582

Query: 132 FEGSFSF 138
             GS   
Sbjct: 583 LHGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 1e-06
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 220 LDTLYLLNNSLSGNFQLP---SSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSEN 276
           +D L L N  L G   +P   S    L  I++S N   G +P ++G I   L  L+LS N
Sbjct: 420 IDGLGLDNQGLRG--FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYN 476

Query: 277 GFEVRIPSSMSEMKRLESLDLSSNNFSGELP 307
            F   IP S+ ++  L  L+L+ N+ SG +P
Sbjct: 477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 362 SLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMN 418
           +L  LDLSNN L       F  L  L+ LD+S N L+   P +F  L SLR L +  N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.4 bits (110), Expect = 6e-05
 Identities = 49/222 (22%), Positives = 83/222 (37%), Gaps = 75/222 (33%)

Query: 64  VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 123
           +N+   ++  L  L L++N  +G L P       ++ LDLS NQ +G +   + ++  L 
Sbjct: 444 INSRKWDMPSLQMLSLARNKFFGGL-PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELM 502

Query: 124 YLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLH 183
            L L +N   G                                                 
Sbjct: 503 QLKLSENKLSGE------------------------------------------------ 514

Query: 184 ALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 243
            +P  L     L  +DLSHN+L G  P+                 S S   ++P     L
Sbjct: 515 -IPDELSSCKKLVSLDLSHNQLSGQIPA-----------------SFS---EMPV----L 549

Query: 244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSS 285
            ++D+S N+ SG++P N+G +   L+ +N+S N     +PS+
Sbjct: 550 SQLDLSQNQLSGEIPKNLGNV-ESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 63/231 (27%), Positives = 96/231 (41%), Gaps = 36/231 (15%)

Query: 72  KKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 131
             L ELDLS N +   L   L NL ++K LDLS N L+ +L  +++N+ +L  L L  N 
Sbjct: 140 SNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK 197

Query: 132 FEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLH 191
                            +      L  +E              L+L N S+  L S L +
Sbjct: 198 IS--------------DLPPEIELLSALEE-------------LDLSNNSIIELLSSLSN 230

Query: 192 QLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHN 251
             +L  ++LS+NKL        + N + L+TL L NN +S +     S  +L  +D+S N
Sbjct: 231 LKNLSGLELSNNKL--EDLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGN 287

Query: 252 KFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNF 302
             S  LP     +L   L LNL      + +         L + ++ SN  
Sbjct: 288 SLSNALPLIALLLLLLELLLNLLLTLKALEL----KLNSILLNNNILSNGE 334

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 22/56 (39%), Positives = 30/56 (53%)

Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDL 630
           LD S N LT         L  ++ L+LS N L+   P++ S L  + SLDLS N+L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.3 bits (102), Expect = 5e-04
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 77  LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSF 136
           L L    L G +   +S L H++ ++LS N + GN+   + +I SLE L L  N+F GS 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 137 SFNSLKNHSKLQVFKLS-NSL 156
              SL   + L++  L+ NSL
Sbjct: 483 P-ESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 73  KLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 131
            L  LDLS N L   +       L ++KVLDLS N LT       + + SL  L L  NN
Sbjct: 1   NLKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 132 F 132
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 171 QLKALNLRNCSLHALPSFLLHQLD-LRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNS 229
            LK+L+L N  L  +P      L  L+ +DLS N L  +           L +L L  N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 230 L 230
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 316 SLSFLSLSDNHLQ--GEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML 373
           +L  L LS+N L    +  F    NL  L L+ N+ +    +  S   SL  LDLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 81/282 (28%), Positives = 115/282 (40%), Gaps = 58/282 (20%)

Query: 365 ELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSI 424
            LD S N+L         NL  L  LD++ N+L  ++     L++L  L +  N      
Sbjct: 82  SLDGSENLL---------NLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIP 132

Query: 425 PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNI 484
           P      S+L  LDL DN+   S+P  +     L  L L  N L  ++P  L +LS LN 
Sbjct: 133 PLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN 190

Query: 485 LDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHF 544
           LDLS NK +  +P     +                       E +   NS +EL      
Sbjct: 191 LDLSGNKIS-DLPPEIELL-------------------SALEELDLSNNSIIELLSSLS- 229

Query: 545 YKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHN 604
                                   L  ++GL+ S N+L  D+P  IG+LS +  L+LS+N
Sbjct: 230 -----------------------NLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265

Query: 605 FLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSN 646
            +S SI  SL +L  +  LDLS N LS  +P     L  L  
Sbjct: 266 QIS-SIS-SLGSLTNLRELDLSGNSLSNALPLIALLLLLLEL 305

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 22/60 (36%), Positives = 27/60 (45%)

Query: 338 NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQL 397
           NL  L L+NN  +           +L  LDLS N L    P  F  L  L+ LD+S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	764
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
PLN03150	623	hypothetical protein; Provisional	99.57
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.39
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.27
PLN03150	623	hypothetical protein; Provisional	99.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.05
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.8
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.67
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.61
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.44
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.44
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.34
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.34
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.31
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.04
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88
PRK15386	426	type III secretion protein GogB; Provisional	97.77
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.74
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.73
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.7
KOG4341	483	consensus F-box protein containing LRR [General fu	97.68
KOG4341	483	consensus F-box protein containing LRR [General fu	97.65
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.64
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.62
PRK15386	426	type III secretion protein GogB; Provisional	97.5
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.11
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.06
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.77
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.33
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.06
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.03
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.69
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.48
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.41
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.29
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.82
KOG4308	478	consensus LRR-containing protein [Function unknown	92.02
KOG4308	478	consensus LRR-containing protein [Function unknown	91.39
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.84
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.63
smart00370	26	LRR Leucine-rich repeats, outliers.	88.63
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.43
smart00370	26	LRR Leucine-rich repeats, outliers.	88.43
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.05
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.8
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.39

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.4e-65  Score=616.70  Aligned_cols=560  Identities=33%  Similarity=0.514  Sum_probs=499.0

Q ss_pred             CCCcccccCCccccCCCCcceeeeccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhh-C
Q 045580           40 KGSITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA-N  118 (764)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~  118 (764)
                      .+....|.....||.|.|+.|..        ..+++.|||++|.+++.++..|..+++|++|+|++|++++.+|..+. +
T Consensus        45 ~~~~~~w~~~~~~c~w~gv~c~~--------~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~  116 (968)
T PLN00113         45 LKYLSNWNSSADVCLWQGITCNN--------SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTT  116 (968)
T ss_pred             cccCCCCCCCCCCCcCcceecCC--------CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhcc
Confidence            34567887777899999998752        35899999999999999999999999999999999999988887654 9


Q ss_pred             CCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCc-cccCCCCCCCCccEEEcCCCCC-CCccHhhhCCCCcc
Q 045580          119 IKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIE-TEEFPGLPEYQLKALNLRNCSL-HALPSFLLHQLDLR  196 (764)
Q Consensus       119 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l-~~lp~~l~~~~~L~  196 (764)
                      +++|++|++++|++++.+|.   ..+++|++|++++|.+... ...+  ..+.+|++|++++|.+ +.+|..+.++++|+
T Consensus       117 l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  191 (968)
T PLN00113        117 SSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDI--GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE  191 (968)
T ss_pred             CCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHH--hcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence            99999999999999988874   5688999999999987432 2222  3456799999999998 57899999999999


Q ss_pred             EEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCC-CCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEccc
Q 045580          197 FIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSE  275 (764)
Q Consensus       197 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~  275 (764)
                      +|++++|++.+.+|..+. ++++|++|++++|.+.+.. .....+++|++|++++|.+.+.+|..+.. +++|++|++++
T Consensus       192 ~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~  269 (968)
T PLN00113        192 FLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQ  269 (968)
T ss_pred             eeeccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcC
Confidence            999999999988888764 8999999999999987642 22357889999999999999888888765 89999999999


Q ss_pred             CCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcc
Q 045580          276 NGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKI  353 (764)
Q Consensus       276 n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~  353 (764)
                      |.+.+..|..+.++++|++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+..  .+..+++|+.|++++|.+.+.+
T Consensus       270 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  348 (968)
T PLN00113        270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI  348 (968)
T ss_pred             CeeeccCchhHhhccCcCEEECcCCeeccCCChhH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence            99998899999999999999999999988888765 68899999999999988655  6778899999999999999899


Q ss_pred             cccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCC
Q 045580          354 QDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSS  432 (764)
Q Consensus       354 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~  432 (764)
                      |..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+ .+++|+.|++++|.+++.+|..+..++
T Consensus       349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~  428 (968)
T PLN00113        349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP  428 (968)
T ss_pred             ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC
Confidence            9999999999999999999998899999999999999999999999888877 789999999999999999999999999


Q ss_pred             CCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccC
Q 045580          433 SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAA  512 (764)
Q Consensus       433 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~  512 (764)
                      +|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|..+.+          
T Consensus       429 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~----------  497 (968)
T PLN00113        429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS----------  497 (968)
T ss_pred             CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh----------
Confidence            99999999999999999888899999999999999998888765 4588999999999999888876654          


Q ss_pred             CccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccC
Q 045580          513 GSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGS  592 (764)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~  592 (764)
                                                                              ++.|+.|+|++|++.+.+|..+++
T Consensus       498 --------------------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~  521 (968)
T PLN00113        498 --------------------------------------------------------LSELMQLKLSENKLSGEIPDELSS  521 (968)
T ss_pred             --------------------------------------------------------hhccCEEECcCCcceeeCChHHcC
Confidence                                                                    347899999999999999999999


Q ss_pred             ccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCcccc
Q 045580          593 LSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNY  672 (764)
Q Consensus       593 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~  672 (764)
                      +++|+.|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|+++++++|+++|.+|..+++.++...++
T Consensus       522 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~  601 (968)
T PLN00113        522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAV  601 (968)
T ss_pred             ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q 045580          673 GGNSGLCGPR  682 (764)
Q Consensus       673 ~gn~~lc~~~  682 (764)
                      .||+++||.+
T Consensus       602 ~~n~~lc~~~  611 (968)
T PLN00113        602 AGNIDLCGGD  611 (968)
T ss_pred             cCCccccCCc
Confidence            9999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.6e-57  Score=546.87  Aligned_cols=515  Identities=34%  Similarity=0.493  Sum_probs=469.3

Q ss_pred             CCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccE
Q 045580           95 LTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKA  174 (764)
Q Consensus        95 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  174 (764)
                      ..+++.|+|++|.+++.++.+|..+++|++|+|++|++.|.+|...+.++++|++|++++|.+.....   ....++|++
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~  144 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP---RGSIPNLET  144 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC---ccccCCCCE
Confidence            35799999999999999999999999999999999999999998777799999999999998753322   234567999


Q ss_pred             EEcCCCCC-CCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCC-CCCCCCCCccEEEccCCC
Q 045580          175 LNLRNCSL-HALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRIDISHNK  252 (764)
Q Consensus       175 L~L~~n~l-~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~L~~L~ls~n~  252 (764)
                      |++++|.+ +.+|..++.+++|++|++++|.+.+.+|..+. ++++|++|++++|.+.+.. .....+++|+.|++++|.
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence            99999999 57899999999999999999999988988764 8999999999999987642 223578999999999999


Q ss_pred             CCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee-
Q 045580          253 FSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-  331 (764)
Q Consensus       253 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~-  331 (764)
                      +.+.+|..+.. +++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+.. 
T Consensus       224 l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p  301 (968)
T PLN00113        224 LSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIP  301 (968)
T ss_pred             cCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCC
Confidence            99999998865 9999999999999999999999999999999999999998888876 68999999999999998655 


Q ss_pred             -ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCC
Q 045580          332 -VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSS  409 (764)
Q Consensus       332 -~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~  409 (764)
                       .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|..+ .+++
T Consensus       302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~  381 (968)
T PLN00113        302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN  381 (968)
T ss_pred             hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCC
Confidence             67889999999999999999999999999999999999999999999999999999999999999999998887 7899


Q ss_pred             ccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCC
Q 045580          410 LRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSY  489 (764)
Q Consensus       410 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  489 (764)
                      |+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.++..+..+++|+.|++++
T Consensus       382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  461 (968)
T PLN00113        382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR  461 (968)
T ss_pred             CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999899999999999999


Q ss_pred             CcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccccccc
Q 045580          490 NKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDIL  569 (764)
Q Consensus       490 n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  569 (764)
                      |++.+.+|..+.                                                                   .
T Consensus       462 n~~~~~~p~~~~-------------------------------------------------------------------~  474 (968)
T PLN00113        462 NKFFGGLPDSFG-------------------------------------------------------------------S  474 (968)
T ss_pred             ceeeeecCcccc-------------------------------------------------------------------c
Confidence            999887775432                                                                   2


Q ss_pred             ccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEec
Q 045580          570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNV  649 (764)
Q Consensus       570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  649 (764)
                      ++|+.||+++|++++.+|..+.++++|+.|+|++|++++.+|..++++++|++|+|++|++++.+|..+..+++|+.||+
T Consensus       475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  554 (968)
T PLN00113        475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL  554 (968)
T ss_pred             ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccccCCCCC-CCCCCCCccccCCCCCCCCCC
Q 045580          650 SYNHLSGPTPNA-GQFANFDEQNYGGNSGLCGPR  682 (764)
Q Consensus       650 s~N~l~g~~p~~-~~~~~~~~~~~~gn~~lc~~~  682 (764)
                      ++|+++|.+|.. ..+..+....+.+|+..+..|
T Consensus       555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             CCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            999999999976 456667778888888765443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.7e-44  Score=349.95  Aligned_cols=500  Identities=26%  Similarity=0.355  Sum_probs=355.3

Q ss_pred             ccCCCCCcccccccCCCCCcccccCCccccCCCCcceeeeccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEEC
Q 045580           24 SPIIKKPQELWHKFFPKGSITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDL  103 (764)
Q Consensus        24 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  103 (764)
                      +...++|.++|+.....+.-        -.||..++              ++.|++++|.+. .+.+.+.++..|.+|++
T Consensus        19 r~l~~vp~~vyq~~~t~~e~--------e~wW~qv~--------------l~~lils~N~l~-~l~~dl~nL~~l~vl~~   75 (565)
T KOG0472|consen   19 RSLKDVPTEVYQINLTTGEG--------ENWWEQVD--------------LQKLILSHNDLE-VLREDLKNLACLTVLNV   75 (565)
T ss_pred             chhhhccHHHHHHHhhccch--------hhhhhhcc--------------hhhhhhccCchh-hccHhhhcccceeEEEe
Confidence            34567788888766333322        23455543              667889999888 44566888899999999


Q ss_pred             CCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCC
Q 045580          104 SSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLH  183 (764)
Q Consensus       104 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~  183 (764)
                      ++|++. ..|.+++.+..++.++.++|+++ .+| ..+..+.+|+.++++.|.+..-.+.+  ..+..|+.++..+|++.
T Consensus        76 ~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~l~~l~~s~n~~~el~~~i--~~~~~l~dl~~~~N~i~  150 (565)
T KOG0472|consen   76 HDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELP-EQIGSLISLVKLDCSSNELKELPDSI--GRLLDLEDLDATNNQIS  150 (565)
T ss_pred             ccchhh-hCCHHHHHHHHHHHhhcccchHh-hcc-HHHhhhhhhhhhhccccceeecCchH--HHHhhhhhhhccccccc
Confidence            999888 56778888889999999999887 566 34666666666666655542222111  12223555566666666


Q ss_pred             CccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhh
Q 045580          184 ALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGK  263 (764)
Q Consensus       184 ~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  263 (764)
                      ++|+.++++.+|..+++.+|++. ..|+... +++.|++                       ||...|-+. .+|+.++.
T Consensus       151 slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~-----------------------ld~~~N~L~-tlP~~lg~  204 (565)
T KOG0472|consen  151 SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKH-----------------------LDCNSNLLE-TLPPELGG  204 (565)
T ss_pred             cCchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHh-----------------------cccchhhhh-cCChhhcc
Confidence            66666666666666666666665 3333332 2444444                       444444444 78888875


Q ss_pred             cCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee-ecCCCCCCceE
Q 045580          264 ILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWL  342 (764)
Q Consensus       264 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L  342 (764)
                       +.+|+.|++..|++. .+| .|..|..|++|+++.|.+. .+|.+....++++..||+..|++...+ .+.-+.+|+.|
T Consensus       205 -l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rL  280 (565)
T KOG0472|consen  205 -LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERL  280 (565)
T ss_pred             -hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhh
Confidence             888889999999887 566 7889999999999999988 888888778888888888888888766 55666778888


Q ss_pred             EcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCC---CCCEEE-------CcCCC---------CCCCCCC
Q 045580          343 YLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLS---GLQFLD-------ISENQ---------LSGSVPS  403 (764)
Q Consensus       343 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~-------L~~n~---------l~~~~~~  403 (764)
                      |+++|.++ ..|..++++ +|+.|.+.+|.+.. +-..+-+..   -|++|.       ++.-.         ..+..|.
T Consensus       281 DlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~  357 (565)
T KOG0472|consen  281 DLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD  357 (565)
T ss_pred             cccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence            88888887 456667887 88888888887652 222111111   011111       11100         1112222


Q ss_pred             cccCCCccEEeccCCccccccchhhcCCC---CCCEEEccCCcCCCcchhhhhcCCCccE-EEccCCcCCccCCccccCC
Q 045580          404 SFNLSSLRRLYMHMNAFNGSIPGALRRSS---SLTVLDLRDNQFSGSIPIWINEFSYLGI-LLLRGNQLKGNIPNQLCHL  479 (764)
Q Consensus       404 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~L~~L~L~~n~l~~~~p~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l  479 (764)
                      .....+.+.|++++-+++ .+|.......   -.+..+++.|++. .+|..+..+..+.+ +.+++|.+. .+|..++.+
T Consensus       358 ~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l  434 (565)
T KOG0472|consen  358 IYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQL  434 (565)
T ss_pred             hhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhh
Confidence            235667889999998888 4454432222   3788999999998 78887777666654 445555554 888889999


Q ss_pred             CCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecc
Q 045580          480 SLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKK  559 (764)
Q Consensus       480 ~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  559 (764)
                      ++|..|++++|.+. .+|..++.                                                         
T Consensus       435 ~kLt~L~L~NN~Ln-~LP~e~~~---------------------------------------------------------  456 (565)
T KOG0472|consen  435 QKLTFLDLSNNLLN-DLPEEMGS---------------------------------------------------------  456 (565)
T ss_pred             hcceeeecccchhh-hcchhhhh---------------------------------------------------------
Confidence            99999999999875 56655543                                                         


Q ss_pred             ccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCccccc
Q 045580          560 RYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLT  639 (764)
Q Consensus       560 ~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~  639 (764)
                               +..|+.||+|+|+|. .+|+.+..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||+.++
T Consensus       457 ---------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lg  525 (565)
T KOG0472|consen  457 ---------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILG  525 (565)
T ss_pred             ---------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhc
Confidence                     236899999999998 89999999999999999999999767777999999999999999998 7899999


Q ss_pred             CCCCCCeEeccCCcccc
Q 045580          640 ELNFLSNFNVSYNHLSG  656 (764)
Q Consensus       640 ~l~~L~~L~ls~N~l~g  656 (764)
                      +|++|++|++++|++.-
T Consensus       526 nmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  526 NMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             cccceeEEEecCCccCC
Confidence            99999999999999983

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-38  Score=320.97  Aligned_cols=387  Identities=26%  Similarity=0.277  Sum_probs=302.7

Q ss_pred             cEEECcCCcccccCchhhcCC--CCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEc
Q 045580           75 VELDLSKNNLYGHLSPCLSNL--THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKL  152 (764)
Q Consensus        75 ~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l  152 (764)
                      +.||.+++.+..+....+..+  +.-+.||+++|.+....+..|.++++|+.+++.+|.++ .+|.  ++..        
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f~~~--------  123 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--FGHE--------  123 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--cccc--------
Confidence            457777777664433333333  23355888888888888888888888888888888876 5552  2211        


Q ss_pred             cCCCCCCccccCCCCCCCCccEEEcCCCCCCCcc-HhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCc
Q 045580          153 SNSLVKIETEEFPGLPEYQLKALNLRNCSLHALP-SFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLS  231 (764)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  231 (764)
                                      ..+|+.|+|.+|.|.++. +.+..++.|+.||||.|.|+ .+|...|..-.++++|+|++|.|+
T Consensus       124 ----------------sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It  186 (873)
T KOG4194|consen  124 ----------------SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRIT  186 (873)
T ss_pred             ----------------ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeecccccc
Confidence                            123666666666665553 45666677777777777776 566555545567777777777776


Q ss_pred             cCCC-CCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhh
Q 045580          232 GNFQ-LPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQF  310 (764)
Q Consensus       232 ~~~~-~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~  310 (764)
                      ..-. ....+.+|..|.|+.|+++ .+|...++.+++|+.|+|..|+|.-.--..|..+++|+.|.+..|.+. .+.+..
T Consensus       187 ~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~  264 (873)
T KOG4194|consen  187 TLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGA  264 (873)
T ss_pred             ccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcc
Confidence            5322 2246667888888888888 888888888999999999999987554667889999999999999998 778778


Q ss_pred             hhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCC
Q 045580          311 LSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQ  388 (764)
Q Consensus       311 ~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  388 (764)
                      |.++.++++|+|+.|+++...  ++.+++.|+.|++++|.|...-++.+..+++|+.|+|++|+++...+..|..+..|+
T Consensus       265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le  344 (873)
T KOG4194|consen  265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE  344 (873)
T ss_pred             eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence            889999999999999988655  778899999999999999988888999999999999999999988888899999999


Q ss_pred             EEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccc---hhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEcc
Q 045580          389 FLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIP---GALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLR  464 (764)
Q Consensus       389 ~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  464 (764)
                      +|+|++|.+...-...| .+++|+.|||++|.++..+.   ..|.++++|+.|++.+|++....-.+|.+++.|++|+|.
T Consensus       345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~  424 (873)
T KOG4194|consen  345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG  424 (873)
T ss_pred             hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence            99999999987666677 88999999999998876543   457889999999999999986656789999999999999


Q ss_pred             CCcCCccCCccccCCCCCCEEeCCCCcC
Q 045580          465 GNQLKGNIPNQLCHLSLLNILDLSYNKF  492 (764)
Q Consensus       465 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  492 (764)
                      +|.|...-|..|..+ .|+.|.+..-+|
T Consensus       425 ~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  425 DNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             CCcceeecccccccc-hhhhhhhcccce
Confidence            999998888889888 888888765443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=8.2e-37  Score=312.19  Aligned_cols=374  Identities=25%  Similarity=0.242  Sum_probs=289.1

Q ss_pred             CCCEEEccCCcCccCC-CCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEEC
Q 045580          219 KLDTLYLLNNSLSGNF-QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDL  297 (764)
Q Consensus       219 ~L~~L~L~~n~l~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  297 (764)
                      .-+.|++++|.+...- .....+++|+++.+..|.++ .+|..... ..+|+.|+|.+|.|+....+.+..++.|+.|||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            3467888888887532 22347888888888888887 77775543 567888888888888777778888888888888


Q ss_pred             CCCcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCC
Q 045580          298 SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG  375 (764)
Q Consensus       298 s~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  375 (764)
                      |.|.++ .+|..-+..-.++++|+|++|.|+...  .|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|++.-
T Consensus       157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            888887 777665666677888888888888655  67777788888888888887777778888888888888888864


Q ss_pred             CccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhc
Q 045580          376 QIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINE  454 (764)
Q Consensus       376 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~  454 (764)
                      .---.|.++++|+.|.+..|.+.......| .+.++++|+|..|+++..-.+++.++++|+.|++++|.|...-++.+.-
T Consensus       236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence            435567888888888888888887776666 7888888888888887776777778888888888888888777777778


Q ss_pred             CCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhh
Q 045580          455 FSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNS  534 (764)
Q Consensus       455 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (764)
                      +++|++|+|++|+++...++.|..+..|++|+|++|+++..--..|                                  
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af----------------------------------  361 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF----------------------------------  361 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH----------------------------------
Confidence            8888888888888887677778778888888888887752111111                                  


Q ss_pred             hhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCC---ccccCccccceecccccccccccC
Q 045580          535 TLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIP---SEIGSLSEIRALNLSHNFLSGSIP  611 (764)
Q Consensus       535 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip---~~l~~l~~L~~L~Ls~N~l~~~~p  611 (764)
                                                      .-+++|++|||++|.++..|-   ..|..+++|+.|+|.+|++....-
T Consensus       362 --------------------------------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k  409 (873)
T KOG4194|consen  362 --------------------------------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK  409 (873)
T ss_pred             --------------------------------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecch
Confidence                                            114578888999998887654   356778888999999998885444


Q ss_pred             ccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCC
Q 045580          612 QSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAG  662 (764)
Q Consensus       612 ~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~  662 (764)
                      ..|.++.+||.|||.+|.|...-|..|..+ .|+.|-+..-.+-|.|.-.|
T Consensus       410 rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W  459 (873)
T KOG4194|consen  410 RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW  459 (873)
T ss_pred             hhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence            778888999999999999888888888888 78888887777777776543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.9e-39  Score=314.86  Aligned_cols=491  Identities=26%  Similarity=0.329  Sum_probs=276.2

Q ss_pred             hhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCc
Q 045580          116 IANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDL  195 (764)
Q Consensus       116 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L  195 (764)
                      ...-.-|+.+++++|.+....  ..+.++..|.++++..|.....+.+..  .+..++.++.+.|++..+|+.+....+|
T Consensus        41 wW~qv~l~~lils~N~l~~l~--~dl~nL~~l~vl~~~~n~l~~lp~aig--~l~~l~~l~vs~n~ls~lp~~i~s~~~l  116 (565)
T KOG0472|consen   41 WWEQVDLQKLILSHNDLEVLR--EDLKNLACLTVLNVHDNKLSQLPAAIG--ELEALKSLNVSHNKLSELPEQIGSLISL  116 (565)
T ss_pred             hhhhcchhhhhhccCchhhcc--HhhhcccceeEEEeccchhhhCCHHHH--HHHHHHHhhcccchHhhccHHHhhhhhh
Confidence            444566778888888876322  246666666666666555432222111  1223555666666666666666666666


Q ss_pred             cEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEccc
Q 045580          196 RFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSE  275 (764)
Q Consensus       196 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~  275 (764)
                      +.++.++|.+. .+|+.++ .+..++.++..+|++...++....+.++..+++.+|++. .+|+.... ++.|++||...
T Consensus       117 ~~l~~s~n~~~-el~~~i~-~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~  192 (565)
T KOG0472|consen  117 VKLDCSSNELK-ELPDSIG-RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNS  192 (565)
T ss_pred             hhhhcccccee-ecCchHH-HHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccch
Confidence            66666666665 4555444 455566666666666554444445555555666666655 44444333 55566666655


Q ss_pred             CCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcc
Q 045580          276 NGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKI  353 (764)
Q Consensus       276 n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~  353 (764)
                      |.++ .+|..++.+.+|..|++..|++. .+|+  |.+|..|++++++.|++.-..  ...+++++..||+..|+++ ..
T Consensus       193 N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~  267 (565)
T KOG0472|consen  193 NLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EV  267 (565)
T ss_pred             hhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cC
Confidence            5554 45555666666666666666655 5552  355555666666555555433  3345555555555555555 44


Q ss_pred             cccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCC---ccEEec--cCCccccccchhh
Q 045580          354 QDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSS---LRRLYM--HMNAFNGSIPGAL  428 (764)
Q Consensus       354 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~---L~~L~l--~~n~l~~~~~~~~  428 (764)
                      |+.++.+.+|++||+++|.++ .+|..++++ .|+.|.+.+|.+...-.+..+...   |++|.=  ..-.++..-..  
T Consensus       268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~--  343 (565)
T KOG0472|consen  268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG--  343 (565)
T ss_pred             chHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc--
Confidence            555555555555555555555 344455555 555555555554322111111000   111100  00000000000  


Q ss_pred             cCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCC---CCEEeCCCCcCcCCcChhhhcchh
Q 045580          429 RRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSL---LNILDLSYNKFNGPIPVCFANVTL  505 (764)
Q Consensus       429 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~~~p~~~~~l~~  505 (764)
                          +-..-+    ...+..| ....+.+.+.|++++-+++ .+|........   ....+++.|++. ++|..+..+..
T Consensus       344 ----~e~~~t----~~~~~~~-~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lke  412 (565)
T KOG0472|consen  344 ----TETAMT----LPSESFP-DIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKE  412 (565)
T ss_pred             ----ccccCC----CCCCccc-chhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHH
Confidence                000000    0000011 1122334555555555555 34433322222   455556666554 34443333221


Q ss_pred             hcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCccccc
Q 045580          506 WTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGD  585 (764)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  585 (764)
                      +...-...                     .          +           +..+....-..+++++.|+|++|-+. .
T Consensus       413 lvT~l~ls---------------------n----------n-----------~isfv~~~l~~l~kLt~L~L~NN~Ln-~  449 (565)
T KOG0472|consen  413 LVTDLVLS---------------------N----------N-----------KISFVPLELSQLQKLTFLDLSNNLLN-D  449 (565)
T ss_pred             HHHHHHhh---------------------c----------C-----------ccccchHHHHhhhcceeeecccchhh-h
Confidence            10000000                     0          0           00000000023568999999999998 7


Q ss_pred             CCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCC
Q 045580          586 IPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFA  665 (764)
Q Consensus       586 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~  665 (764)
                      +|.+++.+..|+.||+|+|++. .+|..+..+..+|.+-.++|++....|+.+.+|.+|..||+.+|.+....|..+.+.
T Consensus       450 LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnmt  528 (565)
T KOG0472|consen  450 LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMT  528 (565)
T ss_pred             cchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhcccc
Confidence            9999999999999999999998 899999999999999999999997777779999999999999999998777778999


Q ss_pred             CCCccccCCCCCC
Q 045580          666 NFDEQNYGGNSGL  678 (764)
Q Consensus       666 ~~~~~~~~gn~~l  678 (764)
                      ++....+.|||.-
T Consensus       529 nL~hLeL~gNpfr  541 (565)
T KOG0472|consen  529 NLRHLELDGNPFR  541 (565)
T ss_pred             ceeEEEecCCccC
Confidence            9999999999964

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-37  Score=330.72  Aligned_cols=470  Identities=28%  Similarity=0.357  Sum_probs=353.0

Q ss_pred             ccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCC
Q 045580           66 TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHS  145 (764)
Q Consensus        66 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~  145 (764)
                      ..+..-..++.|+++.|.+-...-+...+.-+|+.|||++|++. ..|..+..+.+|+.|+++.|.+. ..| .      
T Consensus        15 ~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp-~------   85 (1081)
T KOG0618|consen   15 EQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVP-S------   85 (1081)
T ss_pred             hhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCc-h------
Confidence            33333444666666666555433344445555666666666665 35555666666666666666554 333 1      


Q ss_pred             CCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEc
Q 045580          146 KLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYL  225 (764)
Q Consensus       146 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L  225 (764)
                                         ......+|+++.|.+|.+..+|..+..+.+|+.|+++.|++. .+|..+. .++.++.+..
T Consensus        86 -------------------s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~  144 (1081)
T KOG0618|consen   86 -------------------SCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAA  144 (1081)
T ss_pred             -------------------hhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhh
Confidence                               223334577777888888888999999999999999999987 7887765 7788888888


Q ss_pred             cCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCccccc
Q 045580          226 LNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGE  305 (764)
Q Consensus       226 ~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  305 (764)
                      ++|.....  +  ....++.+++..|.+.+.++.++.. +..  .|+|++|.+. .  ..+..+++|+.|....|+++ .
T Consensus       145 s~N~~~~~--l--g~~~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls-~  213 (1081)
T KOG0618|consen  145 SNNEKIQR--L--GQTSIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLS-E  213 (1081)
T ss_pred             hcchhhhh--h--ccccchhhhhhhhhcccchhcchhh-hhe--eeecccchhh-h--hhhhhccchhhhhhhhcccc-e
Confidence            88822111  1  1222788889888888888877654 444  6999999887 2  24677889999999999887 4


Q ss_pred             CchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCC
Q 045580          306 LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLS  385 (764)
Q Consensus       306 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  385 (764)
                      +.    -.-++|+.|+.++|.+.....-....+|++++++.|++++ +|++++.+.+|+.++..+|.++ .+|..+....
T Consensus       214 l~----~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~  287 (1081)
T KOG0618|consen  214 LE----ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRIT  287 (1081)
T ss_pred             EE----ecCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhh
Confidence            33    2457899999999999855555556789999999999995 4599999999999999999996 7888888899


Q ss_pred             CCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCC-CCCEEEccCCcCCCcch-hhhhcCCCccEEEc
Q 045580          386 GLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSS-SLTVLDLRDNQFSGSIP-IWINEFSYLGILLL  463 (764)
Q Consensus       386 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L  463 (764)
                      +|+.|.+..|.+....|..-..++|+.|++..|++....+..+.... +|..|+.+.|++.. .| ..=...+.|+.|++
T Consensus       288 ~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~Lyl  366 (1081)
T KOG0618|consen  288 SLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYL  366 (1081)
T ss_pred             hHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHH
Confidence            99999999999986655555799999999999999744443333333 37778888888773 33 11234578999999


Q ss_pred             cCCcCCccCCccccCCCCCCEEeCCCCcCcCCcCh-hhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccc
Q 045580          464 RGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPV-CFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVK  542 (764)
Q Consensus       464 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  542 (764)
                      .+|.+++..-+.+.+.+.|++|+|++|++. .+|. ++.+                                        
T Consensus       367 anN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~k----------------------------------------  405 (1081)
T KOG0618|consen  367 ANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRK----------------------------------------  405 (1081)
T ss_pred             hcCcccccchhhhccccceeeeeecccccc-cCCHHHHhc----------------------------------------
Confidence            999999888888889999999999999986 3443 2222                                        


Q ss_pred             cccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCE
Q 045580          543 HFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIES  622 (764)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  622 (764)
                                                +..|+.|+||+|+++ .+|..+.+++.|++|...+|++. ..| ++..+++|+.
T Consensus       406 --------------------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  406 --------------------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV  456 (1081)
T ss_pred             --------------------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence                                      347889999999999 79999999999999999999998 677 8999999999


Q ss_pred             EECcCCcCccc-CcccccCCCCCCeEeccCCcc
Q 045580          623 LDLSHNDLSGQ-IPPQLTELNFLSNFNVSYNHL  654 (764)
Q Consensus       623 LdLs~N~l~~~-ip~~l~~l~~L~~L~ls~N~l  654 (764)
                      +|+|.|+|+.. +|.... -++|++||+++|..
T Consensus       457 lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTR  488 (1081)
T ss_pred             EecccchhhhhhhhhhCC-CcccceeeccCCcc
Confidence            99999999844 343332 37899999999973

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-34  Score=311.88  Aligned_cols=419  Identities=26%  Similarity=0.320  Sum_probs=330.7

Q ss_pred             CCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEc
Q 045580          169 EYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDI  248 (764)
Q Consensus       169 ~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l  248 (764)
                      ..+|+.|+++.|.+..+|....++.+|+++.|.+|++. ..|..+. .+.+|+.|+++.|.+...+.....+..++.+..
T Consensus        67 l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~-~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~  144 (1081)
T KOG0618|consen   67 LSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASIS-ELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAA  144 (1081)
T ss_pred             HHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-cCchhHH-hhhcccccccchhccCCCchhHHhhhHHHHHhh
Confidence            34688889999999999999999999999999999988 8888764 899999999999999877666667888888899


Q ss_pred             cCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccc
Q 045580          249 SHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ  328 (764)
Q Consensus       249 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~  328 (764)
                      ++|.-...++.      ..++.+++..|.+.+.++..+..++.  .|+|.+|.+. ...   ...+.+|+.|....|++.
T Consensus       145 s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls  212 (1081)
T KOG0618|consen  145 SNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLS  212 (1081)
T ss_pred             hcchhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccc
Confidence            99832212222      23788899999888888888888777  7999999886 333   367888999999998887


Q ss_pred             ceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCC
Q 045580          329 GEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLS  408 (764)
Q Consensus       329 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  408 (764)
                      ....  .-++|+.|+.+.|.++...+.  ..-.+|+++++++|+++ .+|++++.+.+|+.++..+|+++......+...
T Consensus       213 ~l~~--~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~  287 (1081)
T KOG0618|consen  213 ELEI--SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRIT  287 (1081)
T ss_pred             eEEe--cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhh
Confidence            5442  236889999999998833322  23468999999999998 567999999999999999999964444445888


Q ss_pred             CccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhh-hcCC-CccEEEccCCcCCccCC-ccccCCCCCCEE
Q 045580          409 SLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI-NEFS-YLGILLLRGNQLKGNIP-NQLCHLSLLNIL  485 (764)
Q Consensus       409 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~-~~l~-~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L  485 (764)
                      +|+.|.+..|.+. .+|......+.|++|+|..|++. .+|+.+ .... .|+.|+.+.|++.. .| ..=...+.|+.|
T Consensus       288 ~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~L  364 (1081)
T KOG0618|consen  288 SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQEL  364 (1081)
T ss_pred             hHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHH
Confidence            9999999999987 55656777899999999999998 455433 3333 37778888888773 33 122235678888


Q ss_pred             eCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccc
Q 045580          486 DLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYK  565 (764)
Q Consensus       486 ~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  565 (764)
                      .+.+|.++...-..+.                                                                
T Consensus       365 ylanN~Ltd~c~p~l~----------------------------------------------------------------  380 (1081)
T KOG0618|consen  365 YLANNHLTDSCFPVLV----------------------------------------------------------------  380 (1081)
T ss_pred             HHhcCcccccchhhhc----------------------------------------------------------------
Confidence            8888888753222111                                                                


Q ss_pred             ccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCC
Q 045580          566 GDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLS  645 (764)
Q Consensus       566 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~  645 (764)
                        ...+|+.|+|++|++.......+.++..|+.|+||+|+++ .+|..+.++..|++|...+|++. ..| .+..++.|+
T Consensus       381 --~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~  455 (1081)
T KOG0618|consen  381 --NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLK  455 (1081)
T ss_pred             --cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcce
Confidence              1458999999999998555567899999999999999999 89999999999999999999999 667 889999999


Q ss_pred             eEeccCCcccc-CCCCCCCCCCCCccccCCCCCC
Q 045580          646 NFNVSYNHLSG-PTPNAGQFANFDEQNYGGNSGL  678 (764)
Q Consensus       646 ~L~ls~N~l~g-~~p~~~~~~~~~~~~~~gn~~l  678 (764)
                      .+|+|.|+|+- .+|..-...+++...+.||..+
T Consensus       456 ~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  456 VLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             EEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            99999999975 4555544477788889999863

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=5.1e-33  Score=286.03  Aligned_cols=365  Identities=25%  Similarity=0.376  Sum_probs=218.8

Q ss_pred             ccEEEcCCCCC--CCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEcc
Q 045580          172 LKALNLRNCSL--HALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDIS  249 (764)
Q Consensus       172 L~~L~L~~n~l--~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls  249 (764)
                      .+-.++++|.+  ..+|.....+++++-|.|...++. .+|+.+. .+.+|++|.+++|++.........++.|+.+++.
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~-~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R   86 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELS-RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR   86 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHH-HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence            45567777777  457888888888888888888876 7787765 7888888888888887665556677777777777


Q ss_pred             CCCCC-CCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccc
Q 045580          250 HNKFS-GQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ  328 (764)
Q Consensus       250 ~n~l~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~  328 (764)
                      .|++. .-+|..++. +..|+.|||++|+++ ..|..+..-+++-.|+||+|++. .||..++.+++.|-.|+|++|++.
T Consensus        87 ~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe  163 (1255)
T KOG0444|consen   87 DNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE  163 (1255)
T ss_pred             ccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh
Confidence            77663 247777776 788888888888887 67777877888888888888887 788777666666666666666554


Q ss_pred             ceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCC-CCCCCcc-c
Q 045580          329 GEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLS-GSVPSSF-N  406 (764)
Q Consensus       329 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~  406 (764)
                      .                       +|+.+..+..|++|+|++|.+.-.--..+..+++|++|.+++.+-+ ..+|..+ .
T Consensus       164 ~-----------------------LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~  220 (1255)
T KOG0444|consen  164 M-----------------------LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD  220 (1255)
T ss_pred             h-----------------------cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence            3                       3334444555555555555443221222233344444444443322 1233333 4


Q ss_pred             CCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEe
Q 045580          407 LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILD  486 (764)
Q Consensus       407 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  486 (764)
                      +.+|..+|++.|.+. ..|..+.++++|+.|+|++|+|+ .+....+...+|++|+++.|+++ .+|..++++++|+.|.
T Consensus       221 l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy  297 (1255)
T KOG0444|consen  221 LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLY  297 (1255)
T ss_pred             hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHH
Confidence            444444444444443 44455555555555555555554 33333344445555555555555 4555555555555555


Q ss_pred             CCCCcCc-CCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccc
Q 045580          487 LSYNKFN-GPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYK  565 (764)
Q Consensus       487 Ls~n~l~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  565 (764)
                      +.+|+++ .-+|..+++                                                               
T Consensus       298 ~n~NkL~FeGiPSGIGK---------------------------------------------------------------  314 (1255)
T KOG0444|consen  298 ANNNKLTFEGIPSGIGK---------------------------------------------------------------  314 (1255)
T ss_pred             hccCcccccCCccchhh---------------------------------------------------------------
Confidence            5555543 122332222                                                               


Q ss_pred             ccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCc
Q 045580          566 GDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIP  635 (764)
Q Consensus       566 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip  635 (764)
                         +..|+.+..++|.+. ..|+.++.+..|+.|.|++|++. .+|+.+.-|+.|+.||+..|.-....|
T Consensus       315 ---L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  315 ---LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             ---hhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence               123444445555554 56666666666666666666665 566666666666666666665543333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.2e-33  Score=286.69  Aligned_cols=363  Identities=25%  Similarity=0.324  Sum_probs=205.6

Q ss_pred             CCCCCcEEECcCCccc-ccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCc
Q 045580           70 ELKKLVELDLSKNNLY-GHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQ  148 (764)
Q Consensus        70 ~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~  148 (764)
                      -++-.+-.|+++|.++ +..|.....+++++-|.|...++. .+|+.++.+.+|++|.+++|++... . ..++.++.|+
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-h-GELs~Lp~LR   81 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-H-GELSDLPRLR   81 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-h-hhhccchhhH
Confidence            3567788899999998 568888999999999999988887 6888899999999999999987622 1 2455555555


Q ss_pred             EEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCC
Q 045580          149 VFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNN  228 (764)
Q Consensus       149 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n  228 (764)
                      .+++..|.+..                       ..+|..++.+..|+.||||+|+++ ..|..+- .-+++-+|+|++|
T Consensus        82 sv~~R~N~LKn-----------------------sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N  136 (1255)
T KOG0444|consen   82 SVIVRDNNLKN-----------------------SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYN  136 (1255)
T ss_pred             HHhhhcccccc-----------------------CCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccC
Confidence            55555444321                       334555555555555555555554 4444432 3344444444444


Q ss_pred             cCccCCCC-CCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCccc-ccC
Q 045580          229 SLSGNFQL-PSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFS-GEL  306 (764)
Q Consensus       229 ~l~~~~~~-~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~  306 (764)
                      +|...+.. ..++..|-.||+|+|++. .+|+.+-. +..|++|+|++|.+.-..-..+..+++|++|.+++.+-+ ..+
T Consensus       137 ~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~  214 (1255)
T KOG0444|consen  137 NIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNI  214 (1255)
T ss_pred             ccccCCchHHHhhHhHhhhccccchhh-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcC
Confidence            44422111 013333334444444443 56665543 666777777777655333334445566666666665432 235


Q ss_pred             chhhhhCCCCCCEEEeeccccccee-ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCC
Q 045580          307 PRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLS  385 (764)
Q Consensus       307 p~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  385 (764)
                      |.++ .++.+|+.++++.|.+...+ .+.++++|+.|+|++|+++. +......-.+|++|+++.|+++ .+|+.++.++
T Consensus       215 Ptsl-d~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~  291 (1255)
T KOG0444|consen  215 PTSL-DDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT  291 (1255)
T ss_pred             CCch-hhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhH
Confidence            5443 45556666666666655444 44455555555555555552 2222333345555555555555 4555555555


Q ss_pred             CCCEEECcCCCCCCC-CCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEc
Q 045580          386 GLQFLDISENQLSGS-VPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLL  463 (764)
Q Consensus       386 ~L~~L~L~~n~l~~~-~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  463 (764)
                      +|+.|.+.+|+++-. +|..+ .+..|+.+..++|.+. ..|..++.|..|+.|.|+.|++. .+|+.+.-++.|++|++
T Consensus       292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDl  369 (1255)
T KOG0444|consen  292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDL  369 (1255)
T ss_pred             HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeec
Confidence            555555555554321 23323 4555555555555554 45555555555555555555554 45555555555555555


Q ss_pred             cCCc
Q 045580          464 RGNQ  467 (764)
Q Consensus       464 ~~n~  467 (764)
                      +.|.
T Consensus       370 reNp  373 (1255)
T KOG0444|consen  370 RENP  373 (1255)
T ss_pred             cCCc
Confidence            5554

>PLN03210 Resistant to P

Probab=99.91  E-value=1.4e-22  Score=245.36  Aligned_cols=292  Identities=24%  Similarity=0.244  Sum_probs=165.1

Q ss_pred             CccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCc-cCCCCCCCCCCccEEEcc
Q 045580          171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLS-GNFQLPSSKHDLLRIDIS  249 (764)
Q Consensus       171 ~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~L~~L~ls  249 (764)
                      +|++|++.+|++..++..+..+++|+.|+|+++...+.+|.  +..+++|++|+|++|... ..+.....+++|+.|+++
T Consensus       612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            45566666666655555555566666666665543334443  234555555555554321 111111234444444444


Q ss_pred             CCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccc
Q 045580          250 HNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG  329 (764)
Q Consensus       250 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~  329 (764)
                      +|...+.+|..+  .+++|+.|++++|.....+|..   .++|++|++++|.+. .+|..+  .+++|+.|.+.++....
T Consensus       690 ~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~  761 (1153)
T PLN03210        690 RCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEK  761 (1153)
T ss_pred             CCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhh
Confidence            443323444433  2445555555554433333321   234445555555443 444322  23444444443321110


Q ss_pred             eeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCC
Q 045580          330 EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSS  409 (764)
Q Consensus       330 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  409 (764)
                      ..               +.+....+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|....+++
T Consensus       762 l~---------------~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~s  826 (1153)
T PLN03210        762 LW---------------ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLES  826 (1153)
T ss_pred             cc---------------ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccc
Confidence            00               001111111223346788888888877667788888888888888888765556666667788


Q ss_pred             ccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCC
Q 045580          410 LRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSY  489 (764)
Q Consensus       410 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  489 (764)
                      |+.|++++|.....+|..   .++|+.|+|++|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++
T Consensus       827 L~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~  902 (1153)
T PLN03210        827 LESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD  902 (1153)
T ss_pred             cCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence            888888887655455532   357888888888887 6788888888888888888544335777777888888888888


Q ss_pred             Cc
Q 045580          490 NK  491 (764)
Q Consensus       490 n~  491 (764)
                      |.
T Consensus       903 C~  904 (1153)
T PLN03210        903 CG  904 (1153)
T ss_pred             Cc
Confidence            74

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=2.7e-22  Score=242.96  Aligned_cols=335  Identities=20%  Similarity=0.219  Sum_probs=208.2

Q ss_pred             CCCCccEEEccCCC------CCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhh
Q 045580          239 SKHDLLRIDISHNK------FSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLS  312 (764)
Q Consensus       239 ~~~~L~~L~ls~n~------l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  312 (764)
                      .+++|+.|.+..+.      +...+|..+....++|+.|.+.++.+. .+|..+ ...+|+.|++++|.+. .++..+ .
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~  631 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-H  631 (1153)
T ss_pred             cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-c
Confidence            45666666665442      222345544432335666666666654 455555 3566667777666665 555443 4


Q ss_pred             CCCCCCEEEeeccc-ccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEE
Q 045580          313 GCFSLSFLSLSDNH-LQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLD  391 (764)
Q Consensus       313 ~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  391 (764)
                      .+++|+.|+++++. +.....+..+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ ++++|+.|+
T Consensus       632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~  710 (1153)
T PLN03210        632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN  710 (1153)
T ss_pred             cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence            56666666666543 3333355556666666666665555666666666666666666654444555544 566666666


Q ss_pred             CcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCC-------CcchhhhhcCCCccEEEcc
Q 045580          392 ISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFS-------GSIPIWINEFSYLGILLLR  464 (764)
Q Consensus       392 L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~p~~~~~l~~L~~L~L~  464 (764)
                      +++|...+.+|..  ..+|+.|++++|.+. .+|..+ .+++|+.|++.++...       ...+......++|+.|+++
T Consensus       711 Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls  786 (1153)
T PLN03210        711 LSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS  786 (1153)
T ss_pred             CCCCCCccccccc--cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence            6666544444432  345666666666654 344333 3556666666553211       1111122234567777777


Q ss_pred             CCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccc
Q 045580          465 GNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHF  544 (764)
Q Consensus       465 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  544 (764)
                      +|...+.+|..+.++++|+.|++++|...+.+|...                                            
T Consensus       787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--------------------------------------------  822 (1153)
T PLN03210        787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--------------------------------------------  822 (1153)
T ss_pred             CCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--------------------------------------------
Confidence            776666667777777777777777665433333221                                            


Q ss_pred             cccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEE
Q 045580          545 YKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLD  624 (764)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~Ld  624 (764)
                                             .+++|+.|+|++|.....+|..   .++|+.|+|++|.++ .+|.++..+++|+.|+
T Consensus       823 -----------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~  875 (1153)
T PLN03210        823 -----------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLD  875 (1153)
T ss_pred             -----------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEE
Confidence                                   1457889999987655566653   357889999999998 7899999999999999


Q ss_pred             CcCCcCcccCcccccCCCCCCeEeccCCc
Q 045580          625 LSHNDLSGQIPPQLTELNFLSNFNVSYNH  653 (764)
Q Consensus       625 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~  653 (764)
                      |++|+--..+|..+..++.|+.+++++|.
T Consensus       876 L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        876 MNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCCcCccCcccccccCCCeeecCCCc
Confidence            99854444688888899999999999884

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=6.9e-25  Score=215.71  Aligned_cols=257  Identities=25%  Similarity=0.299  Sum_probs=187.7

Q ss_pred             CCCCC-CCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCC-CcccccCchhhhhC
Q 045580          236 LPSSK-HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSS-NNFSGELPRQFLSG  313 (764)
Q Consensus       236 ~~~~~-~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~~  313 (764)
                      +|..+ +.-..++|..|+|+ .+|+..++.+++|+.|||++|+|+.+.|++|..+++|.+|-+.+ |+|+ .+|...|.+
T Consensus        61 VP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~g  138 (498)
T KOG4237|consen   61 VPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGG  138 (498)
T ss_pred             CcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhh
Confidence            44433 35567777777777 78888888888888888888888888888888888887776666 7777 888888888


Q ss_pred             CCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccC------------CCccc
Q 045580          314 CFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY------------GQIPH  379 (764)
Q Consensus       314 l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~------------~~~~~  379 (764)
                      +..++.|.+.-|++....  .+..++++..|.+..|.+....-..|..+..++.+.+..|.+.            ...|.
T Consensus       139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i  218 (498)
T KOG4237|consen  139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI  218 (498)
T ss_pred             HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence            888888888887776544  6777888888888888877544447777788888887777621            11222


Q ss_pred             cccCCCCCCEEE-------------------------CcCCCCCCCCCCc-c-cCCCccEEeccCCccccccchhhcCCC
Q 045580          380 WFGNLSGLQFLD-------------------------ISENQLSGSVPSS-F-NLSSLRRLYMHMNAFNGSIPGALRRSS  432 (764)
Q Consensus       380 ~~~~l~~L~~L~-------------------------L~~n~l~~~~~~~-~-~~~~L~~L~l~~n~l~~~~~~~~~~~~  432 (764)
                      .+++..-..-..                         .+.+...+..|.. | .+++|+.|++++|+++++-+.+|.+..
T Consensus       219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a  298 (498)
T KOG4237|consen  219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA  298 (498)
T ss_pred             hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence            222221111111                         1222233333332 3 688899999999999888888899999


Q ss_pred             CCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC
Q 045580          433 SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG  494 (764)
Q Consensus       433 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  494 (764)
                      .+++|.|..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|.+|++-.|.+..
T Consensus       299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC  360 (498)
T ss_pred             hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence            99999999998876656677888899999999999988888888888889999988887753

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.6e-21  Score=218.75  Aligned_cols=264  Identities=28%  Similarity=0.367  Sum_probs=143.9

Q ss_pred             cEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEee
Q 045580          244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS  323 (764)
Q Consensus       244 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~  323 (764)
                      ..|+++++.++ .+|..+.   ++|+.|++.+|+++. +|..   +++|++|++++|+++ .+|.    ..         
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~----lp---------  261 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPV----LP---------  261 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccC----cc---------
Confidence            44555555555 4555442   345555555555552 3321   345555555555554 3442    12         


Q ss_pred             cccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCC
Q 045580          324 DNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPS  403 (764)
Q Consensus       324 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  403 (764)
                                   ++|+.|++++|.++. +|..   ..+|+.|++++|+++ .+|..   .++|+.|++++|++++. |.
T Consensus       262 -------------~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~L-p~  319 (788)
T PRK15387        262 -------------PGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL-PA  319 (788)
T ss_pred             -------------cccceeeccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccC-CC
Confidence                         344444555544442 2221   134555666666655 23331   34566666666666542 22


Q ss_pred             cccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCC
Q 045580          404 SFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLN  483 (764)
Q Consensus       404 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  483 (764)
                      .  ..+|+.|++++|.+++ +|..   ..+|+.|++++|+++ .+|..   .++|+.|++++|+++ .+|..   ..+|+
T Consensus       320 l--p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~  385 (788)
T PRK15387        320 L--PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLK  385 (788)
T ss_pred             C--cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccc
Confidence            1  2345566666666653 3321   235677777777776 34432   245666677777766 34542   24567


Q ss_pred             EEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccc
Q 045580          484 ILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYES  563 (764)
Q Consensus       484 ~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  563 (764)
                      .|++++|++++ +|..                                                                
T Consensus       386 ~LdLs~N~Lt~-LP~l----------------------------------------------------------------  400 (788)
T PRK15387        386 ELIVSGNRLTS-LPVL----------------------------------------------------------------  400 (788)
T ss_pred             eEEecCCcccC-CCCc----------------------------------------------------------------
Confidence            77777777653 2211                                                                


Q ss_pred             ccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccC
Q 045580          564 YKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTE  640 (764)
Q Consensus       564 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~  640 (764)
                           .+.|+.|++++|++++ +|...   .+|+.|++++|+|+ .+|..++++++|+.|+|++|++++.+|..+..
T Consensus       401 -----~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        401 -----PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             -----ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence                 1246667777777763 55432   35666777777776 56777777777777777777777776666543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=1.2e-23  Score=207.04  Aligned_cols=398  Identities=21%  Similarity=0.241  Sum_probs=226.3

Q ss_pred             CCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcC-CCCCCCCChhhhccCCCCcEEE
Q 045580           73 KLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD-NNFEGSFSFNSLKNHSKLQVFK  151 (764)
Q Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~l~~l~~L~~L~  151 (764)
                      .-+.++|..|.|+.+.+.+|+.+++||.||||+|+|+.+.|++|.++++|..|-+.+ |+|+ .+|...|+++..|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            557899999999999999999999999999999999999999999999988777666 8887 88888999999988888


Q ss_pred             ccCCCCC-CccccCCCCCCCCccEEEcCCCCCCCccH-hhhCCCCccEEEccCCCCCCc-cchH----------HhhcCC
Q 045580          152 LSNSLVK-IETEEFPGLPEYQLKALNLRNCSLHALPS-FLLHQLDLRFIDLSHNKLQGT-FPSW----------LLQNNT  218 (764)
Q Consensus       152 l~~~~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~l~~~~~L~~L~Ls~n~l~~~-~~~~----------~~~~l~  218 (764)
                      +.-|.+. +..+++..++  +|..|.+.+|.+..++. .+..+..++.+.+..|.+... --+|          .++...
T Consensus       147 lNan~i~Cir~~al~dL~--~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLP--SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             cChhhhcchhHHHHHHhh--hcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            7766542 2222222222  25555555555555543 444555555555555542100 0000          000111


Q ss_pred             CCCEEEccCCcCccCCCCCCCCCCccEE---EccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEE
Q 045580          219 KLDTLYLLNNSLSGNFQLPSSKHDLLRI---DISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESL  295 (764)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L---~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  295 (764)
                      ...-..+.+.++....+ ......++.+   -.+.+...+..|...++.+++|++|+|++|+++.+-+.+|.....+++|
T Consensus       225 c~~p~rl~~~Ri~q~~a-~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDA-RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             ecchHHHHHHHhcccch-hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence            11111111111110000 0001111111   2233334446666666777888888888888877777778888888888


Q ss_pred             ECCCCcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcc-cccccCCCCCCEEeCcCCc
Q 045580          296 DLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKI-QDGLSKATSLLELDLSNNM  372 (764)
Q Consensus       296 ~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~  372 (764)
                      .|..|++. .+...+|.++..|+.|+|.+|+|+...  .|....+|.+|.+-.|.+.-.- -.+++.       .+....
T Consensus       304 ~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-------Wlr~~~  375 (498)
T KOG4237|consen  304 YLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE-------WLRKKS  375 (498)
T ss_pred             hcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH-------HHhhCC
Confidence            88888776 666667777777777777777777543  5666667777777666543100 000000       000000


Q ss_pred             cCCCccccccCCCCCCEEECcCCCCCC---CCCCcc----------cCCCccEEeccCCccccccchhhcCCCCCCEEEc
Q 045580          373 LYGQIPHWFGNLSGLQFLDISENQLSG---SVPSSF----------NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDL  439 (764)
Q Consensus       373 l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~----------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  439 (764)
                      ..| .|. -..-..++.+.++...+..   ..|+..          .++.+.+..=..|+....+|..+  ....+++++
T Consensus       376 ~~~-~~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl  451 (498)
T KOG4237|consen  376 VVG-NPR-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYL  451 (498)
T ss_pred             CCC-CCC-CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhc
Confidence            000 000 0011123333333322211   011100          22333322222233223444332  235567888


Q ss_pred             cCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCC
Q 045580          440 RDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYN  490 (764)
Q Consensus       440 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  490 (764)
                      .+|.++ .+|..  .+.+| .+++++|++....-..|.++.+|.+|-|++|
T Consensus       452 ~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  452 DGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             ccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            888887 55654  45666 7888888887555567777888888777765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=8.2e-21  Score=213.13  Aligned_cols=263  Identities=25%  Similarity=0.306  Sum_probs=132.3

Q ss_pred             ccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCC
Q 045580          172 LKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHN  251 (764)
Q Consensus       172 L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n  251 (764)
                      -..|+++++.++++|..+.  .+|+.|++++|+++ .+|.    ..++|++|++++|.++..+   ...++|+.|++++|
T Consensus       203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP---~lp~sL~~L~Ls~N  272 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLP---VLPPGLLELSIFSN  272 (788)
T ss_pred             CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCccc---CcccccceeeccCC
Confidence            4566777777777776554  25777777777766 4554    2466677777777666432   23356666666666


Q ss_pred             CCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee
Q 045580          252 KFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV  331 (764)
Q Consensus       252 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~  331 (764)
                      .+. .+|..    +++|+.|++++|+++ .+|..   .++|+.|++++|++. .+|..    ..+|+.|++++|.+++..
T Consensus       273 ~L~-~Lp~l----p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~LP  338 (788)
T PRK15387        273 PLT-HLPAL----PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTSLP  338 (788)
T ss_pred             chh-hhhhc----hhhcCEEECcCCccc-ccccc---ccccceeECCCCccc-cCCCC----cccccccccccCcccccc
Confidence            665 44431    345666666666665 23432   345666666666665 34431    234555555555554322


Q ss_pred             ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCcc
Q 045580          332 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLR  411 (764)
Q Consensus       332 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~  411 (764)
                      .+  ..+|+.|++++|++++ +|..   ..+|+.|++++|.+.+ +|..                          ..+|+
T Consensus       339 ~l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l--------------------------~~~L~  385 (788)
T PRK15387        339 TL--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL--------------------------PSGLK  385 (788)
T ss_pred             cc--ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc--------------------------ccccc
Confidence            11  1244555555555442 2221   1234444444444442 3321                          12344


Q ss_pred             EEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCc
Q 045580          412 RLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK  491 (764)
Q Consensus       412 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  491 (764)
                      .|++++|.+++ +|..   .++|+.|++++|+++ .+|...   .+|+.|++++|+++ .+|..+..+++|+.|++++|+
T Consensus       386 ~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        386 ELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             eEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence            44444444442 2211   234555555555554 233221   23445555555555 445555555555555555555


Q ss_pred             CcCCcChhh
Q 045580          492 FNGPIPVCF  500 (764)
Q Consensus       492 l~~~~p~~~  500 (764)
                      +++..|..+
T Consensus       457 Ls~~~~~~L  465 (788)
T PRK15387        457 LSERTLQAL  465 (788)
T ss_pred             CCchHHHHH
Confidence            555544444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=4.6e-19  Score=200.62  Aligned_cols=223  Identities=25%  Similarity=0.391  Sum_probs=96.3

Q ss_pred             CCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECC
Q 045580          219 KLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLS  298 (764)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls  298 (764)
                      +...|+++++.++..+..  -.+.|+.|++++|+++ .+|..+.   ++|++|++++|.++ .+|..+.  ++|+.|+++
T Consensus       179 ~~~~L~L~~~~LtsLP~~--Ip~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTIPAC--IPEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcCCcc--cccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            345566665555543211  1234555555555555 4444432   34555555555544 2333322  245555555


Q ss_pred             CCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCcc
Q 045580          299 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIP  378 (764)
Q Consensus       299 ~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  378 (764)
                      +|.+. .+|..+.   .                      +|+.|++++|.++ .+|..+.  ++|+.|++++|++++ +|
T Consensus       250 ~N~L~-~LP~~l~---s----------------------~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP  299 (754)
T PRK15370        250 INRIT-ELPERLP---S----------------------ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LP  299 (754)
T ss_pred             CCccC-cCChhHh---C----------------------CCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Cc
Confidence            55544 4443321   2                      3344444444443 2232221  245555555555442 23


Q ss_pred             ccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCc
Q 045580          379 HWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYL  458 (764)
Q Consensus       379 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L  458 (764)
                      ..+.  ++|+.|++++|.++. +|... .++|+.|++++|.+++ +|..+  +++|+.|++++|+++ .+|..+.  ++|
T Consensus       300 ~~lp--~sL~~L~Ls~N~Lt~-LP~~l-~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L  369 (754)
T PRK15370        300 AHLP--SGITHLNVQSNSLTA-LPETL-PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTI  369 (754)
T ss_pred             ccch--hhHHHHHhcCCcccc-CCccc-cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCc
Confidence            2221  234445555555442 22111 1344445555554442 33322  135555555555554 3343331  345


Q ss_pred             cEEEccCCcCCccCCccccCCCCCCEEeCCCCcCc
Q 045580          459 GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFN  493 (764)
Q Consensus       459 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  493 (764)
                      ++|++++|+++ .+|..+.  ..|+.|++++|+++
T Consensus       370 ~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~  401 (754)
T PRK15370        370 TTLDVSRNALT-NLPENLP--AALQIMQASRNNLV  401 (754)
T ss_pred             CEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc
Confidence            55555555554 2333332  23555555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=8.2e-19  Score=198.59  Aligned_cols=246  Identities=22%  Similarity=0.346  Sum_probs=170.9

Q ss_pred             CccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccC
Q 045580          171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISH  250 (764)
Q Consensus       171 ~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~  250 (764)
                      +...|++++++++.+|..+.  ++|+.|++++|+++ .+|..++   ++|++|++++|.+++.+.  ....+|+.|++++
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~--~l~~~L~~L~Ls~  250 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPA--TLPDTIQEMELSI  250 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCCh--hhhccccEEECcC
Confidence            46788888888888887653  47888999999888 6777654   578888888888875432  1234788888888


Q ss_pred             CCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccce
Q 045580          251 NKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE  330 (764)
Q Consensus       251 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~  330 (764)
                      |.+. .+|..+.   ++|+.|++++|+++ .+|..+.  ++|+.|++++|++. .+|..+   .++|+.|++++|.++..
T Consensus       251 N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        251 NRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLTAL  319 (754)
T ss_pred             CccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCccccC
Confidence            8887 7887663   57888899888887 4676554  47888999888887 566543   24677788888877754


Q ss_pred             eecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCc
Q 045580          331 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSL  410 (764)
Q Consensus       331 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L  410 (764)
                      .. ...++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++. +|..+ ...|
T Consensus       320 P~-~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l-~~sL  390 (754)
T PRK15370        320 PE-TLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENL-PAAL  390 (754)
T ss_pred             Cc-cccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhH-HHHH
Confidence            31 112577788888887774 444442  57888888888776 4555442  577788888887774 33333 1357


Q ss_pred             cEEeccCCccccccchh----hcCCCCCCEEEccCCcCC
Q 045580          411 RRLYMHMNAFNGSIPGA----LRRSSSLTVLDLRDNQFS  445 (764)
Q Consensus       411 ~~L~l~~n~l~~~~~~~----~~~~~~L~~L~L~~n~l~  445 (764)
                      +.|++++|++. .+|..    +..++.+..|++.+|.++
T Consensus       391 ~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        391 QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            77777777776 33433    334466777777777766

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=2e-19  Score=189.93  Aligned_cols=279  Identities=24%  Similarity=0.268  Sum_probs=137.6

Q ss_pred             EEECCCCcccccCchhhhhCCCCCCEEEeeccccccee------ecCCCCCCceEEcccccCCC------cccccccCCC
Q 045580          294 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV------VFPNSTNLCWLYLNNNHFSG------KIQDGLSKAT  361 (764)
Q Consensus       294 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~L~~n~l~~------~~~~~l~~l~  361 (764)
                      .|+|..+.+++.--..++..+..|+.++++++.++...      .+...+.++.++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            45666666663333344455666777777777664321      23344455566665555441      1122233344


Q ss_pred             CCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCcccc----ccchhhcCC-CCCCE
Q 045580          362 SLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNG----SIPGALRRS-SSLTV  436 (764)
Q Consensus       362 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~-~~L~~  436 (764)
                      +|+.|++++|.+.+..+..+..+.+                   . ++|+.|++++|.+.+    .+...+..+ ++|+.
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~-------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~  141 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLR-------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK  141 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhc-------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence            4444444444443323322222222                   0 124555555444432    122233344 56666


Q ss_pred             EEccCCcCCCc----chhhhhcCCCccEEEccCCcCCcc----CCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcc
Q 045580          437 LDLRDNQFSGS----IPIWINEFSYLGILLLRGNQLKGN----IPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTL  508 (764)
Q Consensus       437 L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~  508 (764)
                      |++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+...++|+.|++++|.+++.....+....    
T Consensus       142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~----  217 (319)
T cd00116         142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL----  217 (319)
T ss_pred             EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh----
Confidence            66666666532    223344455666666666666532    222333445666666666665432211111100    


Q ss_pred             cccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCc
Q 045580          509 GQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPS  588 (764)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~  588 (764)
                                                                                ..++.|+.|++++|.+++....
T Consensus       218 ----------------------------------------------------------~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         218 ----------------------------------------------------------ASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             ----------------------------------------------------------cccCCCCEEecCCCcCchHHHH
Confidence                                                                      1133566666666666542222


Q ss_pred             ccc-----Cccccceeccccccccc----ccCccccCCCCCCEEECcCCcCccc----CcccccCC-CCCCeEeccCCcc
Q 045580          589 EIG-----SLSEIRALNLSHNFLSG----SIPQSLSNLKMIESLDLSHNDLSGQ----IPPQLTEL-NFLSNFNVSYNHL  654 (764)
Q Consensus       589 ~l~-----~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~LdLs~N~l~~~----ip~~l~~l-~~L~~L~ls~N~l  654 (764)
                      .+.     ..+.|+.|++++|.++.    .++..+..+++|+.+|+++|.++..    ....+... +.|+.+++.+|++
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            221     13566777777776651    2344455556777777777777743    33444444 5667777776654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=1.1e-18  Score=184.15  Aligned_cols=280  Identities=24%  Similarity=0.281  Sum_probs=178.5

Q ss_pred             EEEcccCCCC-ccCCccccCCCCCCEEECCCCccccc----CchhhhhCCCCCCEEEeecccccc--ee------ecCCC
Q 045580          270 SLNLSENGFE-VRIPSSMSEMKRLESLDLSSNNFSGE----LPRQFLSGCFSLSFLSLSDNHLQG--EV------VFPNS  336 (764)
Q Consensus       270 ~L~L~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~l~~n~l~~--~~------~~~~~  336 (764)
                      .|+|..+.++ ......+..+++|+.|+++++.+.+.    ++.. +...+.++.++++++.+..  ..      .+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            4677777776 34555667788899999999998532    3332 3567789999999998773  11      46678


Q ss_pred             CCCceEEcccccCCCcccccccCCCC---CCEEeCcCCccCCC----ccccccCC-CCCCEEECcCCCCCCCCCCcccCC
Q 045580          337 TNLCWLYLNNNHFSGKIQDGLSKATS---LLELDLSNNMLYGQ----IPHWFGNL-SGLQFLDISENQLSGSVPSSFNLS  408 (764)
Q Consensus       337 ~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~  408 (764)
                      ++|+.|++++|.+.+..+..+..+.+   |++|++++|.+.+.    +...+..+ ++|+.|++++|.+++....     
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-----  155 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE-----  155 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH-----
Confidence            89999999999998666665555544   88899988887632    22334455 6677777777766632211     


Q ss_pred             CccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCc----chhhhhcCCCccEEEccCCcCCcc----CCccccCCC
Q 045580          409 SLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGS----IPIWINEFSYLGILLLRGNQLKGN----IPNQLCHLS  480 (764)
Q Consensus       409 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~  480 (764)
                                    .++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..++
T Consensus       156 --------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~  221 (319)
T cd00116         156 --------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK  221 (319)
T ss_pred             --------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence                          1223344555666666666666532    223344445677777776666533    233455667


Q ss_pred             CCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccc
Q 045580          481 LLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKR  560 (764)
Q Consensus       481 ~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  560 (764)
                      +|++|++++|.+++.....+....                                                        
T Consensus       222 ~L~~L~ls~n~l~~~~~~~l~~~~--------------------------------------------------------  245 (319)
T cd00116         222 SLEVLNLGDNNLTDAGAAALASAL--------------------------------------------------------  245 (319)
T ss_pred             CCCEEecCCCcCchHHHHHHHHHH--------------------------------------------------------
Confidence            788888888877642221111100                                                        


Q ss_pred             cccccccccccccEEEcccCcccc----cCCccccCccccceecccccccccc----cCccccCC-CCCCEEECcCCcC
Q 045580          561 YESYKGDILNYMTGLDFSCNELTG----DIPSEIGSLSEIRALNLSHNFLSGS----IPQSLSNL-KMIESLDLSHNDL  630 (764)
Q Consensus       561 ~~~~~~~~l~~L~~LdLs~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~LdLs~N~l  630 (764)
                          . ...+.|+.|++++|.++.    .+...+..+++|+.+++++|.++..    ....+... +.|++||+.+|.+
T Consensus       246 ----~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         246 ----L-SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             ----h-ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence                0 002367788888888762    3344556667888888888888855    44455555 6888888888764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=3.4e-19  Score=155.75  Aligned_cols=189  Identities=28%  Similarity=0.525  Sum_probs=155.6

Q ss_pred             CCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCC
Q 045580          401 VPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLS  480 (764)
Q Consensus       401 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  480 (764)
                      ++..|.++..+.|.+++|+++ .+|..++.+.+|+.|++.+|++. .+|..++.++.|+.|+++-|++. ..|..|+.++
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p  102 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP  102 (264)
T ss_pred             cccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence            445556777888888888887 45557888899999999999998 78888999999999999999988 7899999999


Q ss_pred             CCCEEeCCCCcCcC-CcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecc
Q 045580          481 LLNILDLSYNKFNG-PIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKK  559 (764)
Q Consensus       481 ~L~~L~Ls~n~l~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  559 (764)
                      .|++||+++|++.. .+|..|..                                                         
T Consensus       103 ~levldltynnl~e~~lpgnff~---------------------------------------------------------  125 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFY---------------------------------------------------------  125 (264)
T ss_pred             hhhhhhccccccccccCCcchhH---------------------------------------------------------
Confidence            99999999998863 33433322                                                         


Q ss_pred             ccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCccccc
Q 045580          560 RYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLT  639 (764)
Q Consensus       560 ~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~  639 (764)
                               +..|+.|+|+.|.+. .+|..++.+++|+.|.+..|.+. ..|.+++.++.|+.|.+.+|+++ .+|..++
T Consensus       126 ---------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~  193 (264)
T KOG0617|consen  126 ---------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELA  193 (264)
T ss_pred             ---------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence                     235677889999998 89999999999999999999988 79999999999999999999999 6777777


Q ss_pred             CCCCC---CeEeccCCccccCCCCC
Q 045580          640 ELNFL---SNFNVSYNHLSGPTPNA  661 (764)
Q Consensus       640 ~l~~L---~~L~ls~N~l~g~~p~~  661 (764)
                      .+.-+   +.+.+.+|++.-+|...
T Consensus       194 ~l~l~~~k~v~r~E~NPwv~pIaeQ  218 (264)
T KOG0617|consen  194 NLDLVGNKQVMRMEENPWVNPIAEQ  218 (264)
T ss_pred             hhhhhhhHHHHhhhhCCCCChHHHH
Confidence            76533   56677888887766643

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=3e-17  Score=143.64  Aligned_cols=167  Identities=28%  Similarity=0.474  Sum_probs=148.4

Q ss_pred             hcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhc
Q 045580          428 LRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWT  507 (764)
Q Consensus       428 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~  507 (764)
                      +-++...+.|.|++|+++ .+|..+..+.+|++|++.+|+++ .+|.+++.+++|+.|+++-|++. ..|..|+.     
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs-----  100 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS-----  100 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-----
Confidence            345678889999999999 77888999999999999999999 78999999999999999999886 56666554     


Q ss_pred             ccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccc-cC
Q 045580          508 LGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTG-DI  586 (764)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~i  586 (764)
                                                                                   ++.|+.|||+.|++.. ..
T Consensus       101 -------------------------------------------------------------~p~levldltynnl~e~~l  119 (264)
T KOG0617|consen  101 -------------------------------------------------------------FPALEVLDLTYNNLNENSL  119 (264)
T ss_pred             -------------------------------------------------------------CchhhhhhccccccccccC
Confidence                                                                         4478889999999864 58


Q ss_pred             CccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCC
Q 045580          587 PSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFA  665 (764)
Q Consensus       587 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~  665 (764)
                      |..|..++.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+++-..|+.+++.
T Consensus       120 pgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~  196 (264)
T KOG0617|consen  120 PGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLD  196 (264)
T ss_pred             CcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhh
Confidence            999999999999999999998 89999999999999999999998 789999999999999999999998888765543

>PLN03150 hypothetical protein; Provisional

Probab=99.57  E-value=4.9e-15  Score=167.78  Aligned_cols=117  Identities=38%  Similarity=0.648  Sum_probs=105.8

Q ss_pred             cccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEecc
Q 045580          571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVS  650 (764)
Q Consensus       571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  650 (764)
                      .++.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCCC--CCCCCCCccccCCCCCCCCCCCCCCC
Q 045580          651 YNHLSGPTPNA--GQFANFDEQNYGGNSGLCGPRINKSC  687 (764)
Q Consensus       651 ~N~l~g~~p~~--~~~~~~~~~~~~gn~~lc~~~~~~~c  687 (764)
                      +|+++|.+|..  ..+.......+.||+++|+.|....|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C  537 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC  537 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence            99999999975  22233455678999999997655566

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.39  E-value=2e-14  Score=148.91  Aligned_cols=176  Identities=32%  Similarity=0.487  Sum_probs=119.8

Q ss_pred             CCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEe
Q 045580          407 LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILD  486 (764)
Q Consensus       407 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  486 (764)
                      +.--...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|.+++|+.|++. ..|..++.|+ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            334445666666665 56666666667777777777776 66777777777777777777777 5666676665 67777


Q ss_pred             CCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccc
Q 045580          487 LSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKG  566 (764)
Q Consensus       487 Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  566 (764)
                      +++|+++ .+|..++.                                                                
T Consensus       150 ~sNNkl~-~lp~~ig~----------------------------------------------------------------  164 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGL----------------------------------------------------------------  164 (722)
T ss_pred             EecCccc-cCCccccc----------------------------------------------------------------
Confidence            7777765 34433321                                                                


Q ss_pred             cccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCe
Q 045580          567 DILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSN  646 (764)
Q Consensus       567 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~  646 (764)
                        ...|..||.|.|++. .+|..++.+.+|+.|++..|++. ..|++++.|+ |..||+|+|+++ .||-.|..|+.|++
T Consensus       165 --~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~  238 (722)
T KOG0532|consen  165 --LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQV  238 (722)
T ss_pred             --chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhhee
Confidence              225666777777776 57777777777777777777776 5666666554 667777777777 57777777777777


Q ss_pred             EeccCCccccC
Q 045580          647 FNVSYNHLSGP  657 (764)
Q Consensus       647 L~ls~N~l~g~  657 (764)
                      |-|.+|+|..+
T Consensus       239 l~LenNPLqSP  249 (722)
T KOG0532|consen  239 LQLENNPLQSP  249 (722)
T ss_pred             eeeccCCCCCC
Confidence            77777777653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.27  E-value=9.3e-12  Score=135.22  Aligned_cols=199  Identities=34%  Similarity=0.487  Sum_probs=114.9

Q ss_pred             EEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCC-CCCEEEccCCcCCCcchhhhhcCCCccEEEccCCc
Q 045580          389 FLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSS-SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQ  467 (764)
Q Consensus       389 ~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  467 (764)
                      .+++..|.+..........+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            345555544333333334445555555555555 2333333342 6666666666665 444456666666666666666


Q ss_pred             CCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhcccccccccc
Q 045580          468 LKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKA  547 (764)
Q Consensus       468 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  547 (764)
                      +. .+|...+.++.|+.|++++|+++ .+|....                                              
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~----------------------------------------------  206 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE----------------------------------------------  206 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhh----------------------------------------------
Confidence            66 44444445666666777776665 2222110                                              


Q ss_pred             CCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcC
Q 045580          548 SGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSH  627 (764)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~  627 (764)
                                          .+..|++|++++|+.. .++..+.++.++..+.+++|++. ..+..++.+++++.|++++
T Consensus       207 --------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~  264 (394)
T COG4886         207 --------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN  264 (394)
T ss_pred             --------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccc
Confidence                                0124566666666433 45566667777777777777766 3366667777777777777


Q ss_pred             CcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580          628 NDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA  661 (764)
Q Consensus       628 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~  661 (764)
                      |+++. ++. +..+.+++.|++++|.++...|..
T Consensus       265 n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         265 NQISS-ISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccccc-ccc-ccccCccCEEeccCccccccchhh
Confidence            77773 333 667777777777777777666544

>PLN03150 hypothetical protein; Provisional

Probab=99.20  E-value=2.2e-11  Score=138.22  Aligned_cols=91  Identities=33%  Similarity=0.545  Sum_probs=83.9

Q ss_pred             ccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCC-CCCCeEe
Q 045580          570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTEL-NFLSNFN  648 (764)
Q Consensus       570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~  648 (764)
                      ++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ ..+..++
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~  521 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN  521 (623)
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence            479999999999999999999999999999999999999999999999999999999999999999998774 4678999


Q ss_pred             ccCCccccCCCC
Q 045580          649 VSYNHLSGPTPN  660 (764)
Q Consensus       649 ls~N~l~g~~p~  660 (764)
                      +++|+..|.+|.
T Consensus       522 ~~~N~~lc~~p~  533 (623)
T PLN03150        522 FTDNAGLCGIPG  533 (623)
T ss_pred             ecCCccccCCCC
Confidence            999987766654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=3.8e-11  Score=130.41  Aligned_cols=202  Identities=35%  Similarity=0.488  Sum_probs=143.8

Q ss_pred             EEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCC-CccEEeccCCccccccchhhcCCCCCCEEEccCCc
Q 045580          365 ELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLS-SLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQ  443 (764)
Q Consensus       365 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  443 (764)
                      .+++..|.+... ...+..++.++.|++.+|.++...+...... +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            456666655322 2234445667777777777775444443443 7888888888776 444567788899999999998


Q ss_pred             CCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccccccccc
Q 045580          444 FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQR  523 (764)
Q Consensus       444 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  523 (764)
                      ++ .+|...+..+.|+.|++++|++. .+|........|++|.+++|++. ..+..+.+                     
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~---------------------  230 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN---------------------  230 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh---------------------
Confidence            88 55665657888999999999988 67766656677999999998632 12211111                     


Q ss_pred             chhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccc
Q 045580          524 ISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSH  603 (764)
Q Consensus       524 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~  603 (764)
                                                                   +..+..+.+++|++. .++..++.+++++.|++++
T Consensus       231 ---------------------------------------------~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~  264 (394)
T COG4886         231 ---------------------------------------------LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSN  264 (394)
T ss_pred             ---------------------------------------------cccccccccCCceee-eccchhccccccceecccc
Confidence                                                         335666778888887 4578888999999999999


Q ss_pred             cccccccCccccCCCCCCEEECcCCcCcccCcccccC
Q 045580          604 NFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTE  640 (764)
Q Consensus       604 N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~  640 (764)
                      |.++ .++. ++.+.+++.||+++|.++...|.....
T Consensus       265 n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~  299 (394)
T COG4886         265 NQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIALL  299 (394)
T ss_pred             cccc-cccc-ccccCccCEEeccCccccccchhhhcc
Confidence            9998 4454 899999999999999999776655443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.16  E-value=8.8e-13  Score=136.88  Aligned_cols=41  Identities=32%  Similarity=0.659  Sum_probs=22.4

Q ss_pred             ccEEEcccCcccccCCccccCccccceecccccccccccCccc
Q 045580          572 MTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSL  614 (764)
Q Consensus       572 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l  614 (764)
                      |..||+|+|+++ .||-+|.+++.|++|-|.+|.+. ..|..+
T Consensus       213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI  253 (722)
T KOG0532|consen  213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI  253 (722)
T ss_pred             eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence            444555555555 45555555555555555555555 344433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=3.2e-11  Score=121.85  Aligned_cols=111  Identities=22%  Similarity=0.241  Sum_probs=55.0

Q ss_pred             cCCCCCCEEECCCCCCCCcch-hhhhCCCCCCEEECcCCCCCCCCCh-hhhccCCCCcEEEccCCCCCCccccCCCCCCC
Q 045580           93 SNLTHIKVLDLSSNQLTGNLQ-SVIANIKSLEYLSLDDNNFEGSFSF-NSLKNHSKLQVFKLSNSLVKIETEEFPGLPEY  170 (764)
Q Consensus        93 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  170 (764)
                      .++.+|+...|.++....... .....|++++.|||++|-|..-.+. .....+++|+.|+++.|.+....+.......+
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            355566666666665542111 2445566666666666655422111 12344556666666655543332222222334


Q ss_pred             CccEEEcCCCCCC--CccHhhhCCCCccEEEccCC
Q 045580          171 QLKALNLRNCSLH--ALPSFLLHQLDLRFIDLSHN  203 (764)
Q Consensus       171 ~L~~L~L~~n~l~--~lp~~l~~~~~L~~L~Ls~n  203 (764)
                      +|+.|.|+.|.++  .+...+..+++|+.|+|.+|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            5666666666663  23334444555666666655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=4.2e-11  Score=114.83  Aligned_cols=86  Identities=26%  Similarity=0.294  Sum_probs=50.4

Q ss_pred             cccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCccc-CcccccCCCCCCeEec
Q 045580          571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQ-IPPQLTELNFLSNFNV  649 (764)
Q Consensus       571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~-ip~~l~~l~~L~~L~l  649 (764)
                      +|+.||||+|.++ .+-.+-..+.+.+.|+|+.|.|.  .-+.++.+-+|..||+++|+|... --..+++|+-|+.+.|
T Consensus       330 ~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  330 QLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             cceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence            4444555555444 23333334455566666666664  234466667777777777777632 1245677777788888


Q ss_pred             cCCccccCCC
Q 045580          650 SYNHLSGPTP  659 (764)
Q Consensus       650 s~N~l~g~~p  659 (764)
                      .+|++.+.+.
T Consensus       407 ~~NPl~~~vd  416 (490)
T KOG1259|consen  407 TGNPLAGSVD  416 (490)
T ss_pred             cCCCccccch
Confidence            8888877443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.05  E-value=3.6e-11  Score=115.25  Aligned_cols=207  Identities=24%  Similarity=0.216  Sum_probs=138.8

Q ss_pred             ccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccC-CccccccchhhcCC
Q 045580          353 IQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHM-NAFNGSIPGALRRS  431 (764)
Q Consensus       353 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~  431 (764)
                      .|-.+.-..+|+.+.++.+.-. .+.+....-|.|+++.+.+..++ ..|.......+....-.. .-..|.........
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW  283 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVPSLLPETILADPSGSEPSTSNGSALVSADTW  283 (490)
T ss_pred             cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-ccccccchhhhcCccCCCCCccCCceEEecchH
Confidence            3444455667777888777543 22232333467888877665544 222222222222211111 11223333334445


Q ss_pred             CCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhccccc
Q 045580          432 SSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQA  511 (764)
Q Consensus       432 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~  511 (764)
                      ..|+++||++|.|+ .+.+++.-+|.++.|++++|.+. .+ ..+..+++|+.||||+|.++.. -    .+.       
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~-~----Gwh-------  348 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAEC-V----GWH-------  348 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhh-h----hhH-------
Confidence            68999999999998 67778888999999999999998 33 3388899999999999987621 0    000       


Q ss_pred             CCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCcccc
Q 045580          512 AGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIG  591 (764)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~  591 (764)
                                                                             ..+.+++.|.|+.|.+..  -..++
T Consensus       349 -------------------------------------------------------~KLGNIKtL~La~N~iE~--LSGL~  371 (490)
T KOG1259|consen  349 -------------------------------------------------------LKLGNIKTLKLAQNKIET--LSGLR  371 (490)
T ss_pred             -------------------------------------------------------hhhcCEeeeehhhhhHhh--hhhhH
Confidence                                                                   114478899999999862  34577


Q ss_pred             Cccccceeccccccccccc-CccccCCCCCCEEECcCCcCccc
Q 045580          592 SLSEIRALNLSHNFLSGSI-PQSLSNLKMIESLDLSHNDLSGQ  633 (764)
Q Consensus       592 ~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~LdLs~N~l~~~  633 (764)
                      .+-+|..||+++|+|.... ...+++++-|+.+.|.+|.+.+.
T Consensus       372 KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  372 KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            7888999999999997442 36799999999999999999954

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.05  E-value=8.2e-11  Score=115.78  Aligned_cols=164  Identities=19%  Similarity=0.204  Sum_probs=105.7

Q ss_pred             ccCCCCCcEEECcCCccccc----CchhhcCCCCCCEEECCCCCC---CCcchh-------hhhCCCCCCEEECcCCCCC
Q 045580           68 ICELKKLVELDLSKNNLYGH----LSPCLSNLTHIKVLDLSSNQL---TGNLQS-------VIANIKSLEYLSLDDNNFE  133 (764)
Q Consensus        68 ~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l---~~~~~~-------~~~~l~~L~~L~Ls~n~l~  133 (764)
                      +..+..++.|+||+|.+...    +...+.+.++|+..++|+-.-   ...+|+       ++..+++|++||||.|.|.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            44678899999999988643    456677888999999987522   223443       4566789999999999885


Q ss_pred             CCCC---hhhhccCCCCcEEEccCCCCCCccccC------------CCCCCCCccEEEcCCCCCCCc-----cHhhhCCC
Q 045580          134 GSFS---FNSLKNHSKLQVFKLSNSLVKIETEEF------------PGLPEYQLKALNLRNCSLHAL-----PSFLLHQL  193 (764)
Q Consensus       134 ~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~------------~~~~~~~L~~L~L~~n~l~~l-----p~~l~~~~  193 (764)
                      -..+   ...++++..|++|.|.||.+.......            .....++|+.+..++|++..-     ...+..++
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            3222   134567888888888888763222111            112234577777777777443     24455666


Q ss_pred             CccEEEccCCCCCCc---cchHHhhcCCCCCEEEccCCcCc
Q 045580          194 DLRFIDLSHNKLQGT---FPSWLLQNNTKLDTLYLLNNSLS  231 (764)
Q Consensus       194 ~L~~L~Ls~n~l~~~---~~~~~~~~l~~L~~L~L~~n~l~  231 (764)
                      .|+.+.++.|.|...   .-..-+..++.|++|+|.+|.++
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            777777777766421   11222346677777777777665

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=7.7e-11  Score=119.10  Aligned_cols=207  Identities=22%  Similarity=0.213  Sum_probs=108.5

Q ss_pred             ccEEEcCCCCCCCcc--HhhhCCCCccEEEccCCCCCCccc-hHHhhcCCCCCEEEccCCcCccCCCC--CCCCCCccEE
Q 045580          172 LKALNLRNCSLHALP--SFLLHQLDLRFIDLSHNKLQGTFP-SWLLQNNTKLDTLYLLNNSLSGNFQL--PSSKHDLLRI  246 (764)
Q Consensus       172 L~~L~L~~n~l~~lp--~~l~~~~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~L~~L  246 (764)
                      |+++.|.++.+...+  +....+++++.||||.|-+..-.+ ..+.+.+++|+.|+|+.|.+......  ...++.|+.|
T Consensus       123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L  202 (505)
T KOG3207|consen  123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQL  202 (505)
T ss_pred             hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheE
Confidence            555555555554443  355566777777777775552222 23445677777777777766532111  1145566666


Q ss_pred             EccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCch-hhhhCCCCCCEEEeecc
Q 045580          247 DISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPR-QFLSGCFSLSFLSLSDN  325 (764)
Q Consensus       247 ~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~l~~n  325 (764)
                      .++.|.++-.--..+...+|+|+.|+|..|...........-+..|++|||++|++. ..+. .....++.|+.|+++.+
T Consensus       203 ~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  203 VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhcccc
Confidence            666666653222233334667777777766432222333344556666666666655 2221 11233444444444444


Q ss_pred             cccceeecCCCCCCceEEcccccCCCccccc-----ccCCCCCCEEeCcCCccCCC-ccccccCCCCCCEEECcCCCCCC
Q 045580          326 HLQGEVVFPNSTNLCWLYLNNNHFSGKIQDG-----LSKATSLLELDLSNNMLYGQ-IPHWFGNLSGLQFLDISENQLSG  399 (764)
Q Consensus       326 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-----l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~  399 (764)
                      .+.+..                     .|+.     ....++|++|++..|++... ....+..+++|+.|.+..|.++.
T Consensus       282 gi~si~---------------------~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  282 GIASIA---------------------EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             Ccchhc---------------------CCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            443211                     1111     23456777777777776421 12234456677777777777664


Q ss_pred             C
Q 045580          400 S  400 (764)
Q Consensus       400 ~  400 (764)
                      .
T Consensus       341 e  341 (505)
T KOG3207|consen  341 E  341 (505)
T ss_pred             c
Confidence            3

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=5.5e-11  Score=117.01  Aligned_cols=111  Identities=22%  Similarity=0.268  Sum_probs=56.0

Q ss_pred             CCCCCCEEECcCCCCCCCCCCcc-----cCCCccEEeccCCccccccch-------------hhcCCCCCCEEEccCCcC
Q 045580          383 NLSGLQFLDISENQLSGSVPSSF-----NLSSLRRLYMHMNAFNGSIPG-------------ALRRSSSLTVLDLRDNQF  444 (764)
Q Consensus       383 ~l~~L~~L~L~~n~l~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~-------------~~~~~~~L~~L~L~~n~l  444 (764)
                      .+++|++|+||.|-+....+..+     .+..|++|.|.+|.+...-..             ....-+.|+.++..+|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            44455555555555543333322     345555566655544311111             122345666666666665


Q ss_pred             CCcc----hhhhhcCCCccEEEccCCcCCcc----CCccccCCCCCCEEeCCCCcCc
Q 045580          445 SGSI----PIWINEFSYLGILLLRGNQLKGN----IPNQLCHLSLLNILDLSYNKFN  493 (764)
Q Consensus       445 ~~~~----p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~  493 (764)
                      ....    ...+...+.|+.+.+..|.|...    +...+..++.|++|||.+|-|+
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            4321    23344556666666666655421    1234455666666666666554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.98  E-value=4.2e-10  Score=104.32  Aligned_cols=130  Identities=28%  Similarity=0.283  Sum_probs=44.6

Q ss_pred             cCCCCCcEEECcCCcccccCchhhc-CCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCC
Q 045580           69 CELKKLVELDLSKNNLYGHLSPCLS-NLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKL  147 (764)
Q Consensus        69 ~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  147 (764)
                      .+..++++|+|++|.|+.+  +.++ .+.+|+.|+|++|.|+..  +.+..+++|++|++++|+++ .++......+++|
T Consensus        16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            3445688999999998854  3455 578899999999998853  34778889999999999887 4442222456777


Q ss_pred             cEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCc--cchHHhhcCCCCCEEEc
Q 045580          148 QVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGT--FPSWLLQNNTKLDTLYL  225 (764)
Q Consensus       148 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~--~~~~~~~~l~~L~~L~L  225 (764)
                      ++|++++|.+....                      .+ ..+..+++|+.|++.+|.++..  ....+...+|+|+.||-
T Consensus        91 ~~L~L~~N~I~~l~----------------------~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   91 QELYLSNNKISDLN----------------------EL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -EEE-TTS---SCC----------------------CC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CEEECcCCcCCChH----------------------Hh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            77776666552211                      11 3455667777777777776522  12234456778887765


Q ss_pred             c
Q 045580          226 L  226 (764)
Q Consensus       226 ~  226 (764)
                      .
T Consensus       148 ~  148 (175)
T PF14580_consen  148 Q  148 (175)
T ss_dssp             E
T ss_pred             E
Confidence            4

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=3e-10  Score=105.28  Aligned_cols=109  Identities=28%  Similarity=0.320  Sum_probs=30.3

Q ss_pred             CCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcE
Q 045580          191 HQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLS  270 (764)
Q Consensus       191 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~  270 (764)
                      +..++++|+|++|+|+ .+. .+...+.+|+.|+|++|.++... ....++.|+.|++++|+++ .++..+...+|+|++
T Consensus        17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence            3445677777777776 333 22224566777777777766542 2334566666666666666 454444333666666


Q ss_pred             EEcccCCCCcc-CCccccCCCCCCEEECCCCccc
Q 045580          271 LNLSENGFEVR-IPSSMSEMKRLESLDLSSNNFS  303 (764)
Q Consensus       271 L~L~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~  303 (764)
                      |++++|+|... .-..+..+++|+.|++.+|++.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            66666666431 1134455566666666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.82  E-value=2.3e-09  Score=81.52  Aligned_cols=61  Identities=39%  Similarity=0.554  Sum_probs=54.9

Q ss_pred             CCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCC
Q 045580           72 KKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNF  132 (764)
Q Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  132 (764)
                      ++|++|++++|+++...+.+|.++++|++|++++|.++...+.+|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999988778999999999999999999988888999999999999999874

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=2.6e-09  Score=81.27  Aligned_cols=59  Identities=37%  Similarity=0.536  Sum_probs=28.8

Q ss_pred             cccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCc
Q 045580          571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHND  629 (764)
Q Consensus       571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~  629 (764)
                      +|++|++++|+++...+..|.++++|+.|++++|+++...|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34455555555553333444555555555555555544444444555555555555544

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=6.2e-10  Score=121.02  Aligned_cols=243  Identities=26%  Similarity=0.266  Sum_probs=125.3

Q ss_pred             CCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccC
Q 045580          338 NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHM  417 (764)
Q Consensus       338 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~  417 (764)
                      .++.+.+..|.+.. +...+..+.+|+.+++.+|.+... ...+..+++|++|++++|.|+...+- -.++.|+.|++++
T Consensus        73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~l-~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEGL-STLTLLKELNLSG  149 (414)
T ss_pred             hHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccch-hhccchhhheecc
Confidence            34444444444442 222344555666666666665522 22245566666666666666533221 1333455566666


Q ss_pred             CccccccchhhcCCCCCCEEEccCCcCCCcch-hhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCc
Q 045580          418 NAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP-IWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPI  496 (764)
Q Consensus       418 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  496 (764)
                      |.+...  ..+..++.|+.+++++|+++..-+ . ...+.+++.+.+.+|.+..  ...+..+..+..+++..|.++..-
T Consensus       150 N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  150 NLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             Ccchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceecc
Confidence            655422  123335566666666666653322 1 3455556666666665542  222223333444455555543111


Q ss_pred             ChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccc--cccE
Q 045580          497 PVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILN--YMTG  574 (764)
Q Consensus       497 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~  574 (764)
                      +.                                                                    ..+.  +|+.
T Consensus       225 ~l--------------------------------------------------------------------~~~~~~~L~~  236 (414)
T KOG0531|consen  225 GL--------------------------------------------------------------------NELVMLHLRE  236 (414)
T ss_pred             Cc--------------------------------------------------------------------ccchhHHHHH
Confidence            00                                                                    0011  2566


Q ss_pred             EEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCccc---Cccc-ccCCCCCCeEecc
Q 045580          575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQ---IPPQ-LTELNFLSNFNVS  650 (764)
Q Consensus       575 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~L~ls  650 (764)
                      +++++|++. .++..+..+..+..|++++|++...  ..+.....+..+..+.|.+...   .... ....+.+..+.+.
T Consensus       237 l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (414)
T KOG0531|consen  237 LYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLE  313 (414)
T ss_pred             HhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccc
Confidence            777777776 4445666777777777777777632  2344556666677777766521   1111 3445667777777


Q ss_pred             CCccccCCC
Q 045580          651 YNHLSGPTP  659 (764)
Q Consensus       651 ~N~l~g~~p  659 (764)
                      +|+.....+
T Consensus       314 ~~~~~~~~~  322 (414)
T KOG0531|consen  314 LNPIRKISS  322 (414)
T ss_pred             cCccccccc
Confidence            777766554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.70  E-value=2e-09  Score=117.04  Aligned_cols=222  Identities=29%  Similarity=0.296  Sum_probs=134.3

Q ss_pred             CCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEc
Q 045580          265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL  344 (764)
Q Consensus       265 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L  344 (764)
                      +.+|+.|++.+|.+.. +...+..+++|++|++++|.+. .+..  +..++.|+.|++++|.+.....+..++.|+.+++
T Consensus        94 ~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISDISGLESLKSLKLLDL  169 (414)
T ss_pred             ccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchhccCCccchhhhcccC
Confidence            5566666666666653 2222556667777777777666 3322  2345557777777777776666666777777777


Q ss_pred             ccccCCCccc-ccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCC--CccEEeccCCccc
Q 045580          345 NNNHFSGKIQ-DGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLS--SLRRLYMHMNAFN  421 (764)
Q Consensus       345 ~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~L~~L~l~~n~l~  421 (764)
                      ++|.+...-+ . ...+.+++.+.+.+|.+...  ..+..+..+..+++..|.++..-+.. .+.  .|+.+++++|.+.
T Consensus       170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~-~~~~~~L~~l~l~~n~i~  245 (414)
T KOG0531|consen  170 SYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLN-ELVMLHLRELYLSGNRIS  245 (414)
T ss_pred             Ccchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcc-cchhHHHHHHhcccCccc
Confidence            7777764433 2 45677777788888877532  33444445555577777766433221 222  3778888888776


Q ss_pred             cccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCcc---CCcc-ccCCCCCCEEeCCCCcCcCCcC
Q 045580          422 GSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGN---IPNQ-LCHLSLLNILDLSYNKFNGPIP  497 (764)
Q Consensus       422 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~-~~~l~~L~~L~Ls~n~l~~~~p  497 (764)
                      . .+..+..+..+..|++.+|++...  ..+...+.+..+....|++...   .... ....+.++.+.+..|.+....+
T Consensus       246 ~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  246 R-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             c-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            3 224556677888888888877643  2234445566666666665522   1111 4556778888888887765444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.67  E-value=2.5e-08  Score=115.74  Aligned_cols=226  Identities=24%  Similarity=0.231  Sum_probs=123.6

Q ss_pred             CCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCC
Q 045580          239 SKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLS  318 (764)
Q Consensus       239 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~  318 (764)
                      .++.|+.||+++|.--+.+|..++. +-+|++|+++++.+. .+|..+.++++|.+|++..+.....+| .....+++|+
T Consensus       569 ~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr  645 (889)
T KOG4658|consen  569 SLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLR  645 (889)
T ss_pred             hCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc-chhhhccccc
Confidence            4555556666655444578888875 788888888888877 678888888888888888776653443 3345688888


Q ss_pred             EEEeeccccccee----ecCCCCCCceEEcccccCCCcccccccCCCCCC----EEeCcCCccCCCccccccCCCCCCEE
Q 045580          319 FLSLSDNHLQGEV----VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLL----ELDLSNNMLYGQIPHWFGNLSGLQFL  390 (764)
Q Consensus       319 ~L~l~~n~l~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L  390 (764)
                      +|.+.........    .+.++.+|+.+.......  .+...+..++.|.    .+.+..+... ..+..+..+.+|+.|
T Consensus       646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L  722 (889)
T KOG4658|consen  646 VLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEEL  722 (889)
T ss_pred             EEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceE
Confidence            8887665422111    334445555555433322  1111122222222    2222222222 344556777788888


Q ss_pred             ECcCCCCCCCCCCcc------c-CCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEc
Q 045580          391 DISENQLSGSVPSSF------N-LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLL  463 (764)
Q Consensus       391 ~L~~n~l~~~~~~~~------~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  463 (764)
                      .+.++.+........      . ++++..+...++... ..+....-.++|+.|.+..+.....+......+..+..+.+
T Consensus       723 ~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~  801 (889)
T KOG4658|consen  723 SILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELIL  801 (889)
T ss_pred             EEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEe
Confidence            888877753322211      1 223333333333222 11222234567777777777665554444555555555555


Q ss_pred             cCCcCCcc
Q 045580          464 RGNQLKGN  471 (764)
Q Consensus       464 ~~n~l~~~  471 (764)
                      ..+.+.+.
T Consensus       802 ~f~~~~~l  809 (889)
T KOG4658|consen  802 PFNKLEGL  809 (889)
T ss_pred             cccccccc
Confidence            55555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.61  E-value=4.5e-08  Score=113.71  Aligned_cols=198  Identities=22%  Similarity=0.213  Sum_probs=94.1

Q ss_pred             CccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCC---CCCCCccEEE
Q 045580          171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLP---SSKHDLLRID  247 (764)
Q Consensus       171 ~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~~L~~L~  247 (764)
                      +|++|++++..+..+|..+.++..|.+|++..+.....+| .....+++|++|.+............   ..+.+|+.+.
T Consensus       596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls  674 (889)
T KOG4658|consen  596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS  674 (889)
T ss_pred             hhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence            3555666666666777777777777777777766543443 33335777777777665422211111   2344444444


Q ss_pred             ccCCCCCCCCChhHhhcCCCCc----EEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhC------CCCC
Q 045580          248 ISHNKFSGQLPGNMGKILPELL----SLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSG------CFSL  317 (764)
Q Consensus       248 ls~n~l~~~~~~~~~~~l~~L~----~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~------l~~L  317 (764)
                      ......  .+-..+. .++.|.    .+.+.++... ..+..+..+.+|+.|.+.++.+.. +.......      ++++
T Consensus       675 ~~~~s~--~~~e~l~-~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e-~~~~~~~~~~~~~~f~~l  749 (889)
T KOG4658|consen  675 ITISSV--LLLEDLL-GMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISE-IVIEWEESLIVLLCFPNL  749 (889)
T ss_pred             eecchh--HhHhhhh-hhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCch-hhcccccccchhhhHHHH
Confidence            433222  0001110 122222    3333333322 345567777888888888877652 21111000      1122


Q ss_pred             CEEEeecccccce-eecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccC
Q 045580          318 SFLSLSDNHLQGE-VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY  374 (764)
Q Consensus       318 ~~L~l~~n~l~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  374 (764)
                      ..+...++..... ......++|+.|.+..+.....+.+....+..++.+.+..+.+.
T Consensus       750 ~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~  807 (889)
T KOG4658|consen  750 SKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE  807 (889)
T ss_pred             HHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence            2222222211111 12223466777777666655554444444555555444444444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.44  E-value=1e-08  Score=87.40  Aligned_cols=89  Identities=25%  Similarity=0.368  Sum_probs=56.4

Q ss_pred             cccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEecc
Q 045580          571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVS  650 (764)
Q Consensus       571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  650 (764)
                      .++.|+|++|.++ .+|.++..++.|+.||++.|.+. ..|.-+..|.++-+||.-+|.+. +||..+-.-+.....++.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg  154 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG  154 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence            4566677777776 56777777777777777777776 55666666777777777777666 455443333334445556


Q ss_pred             CCccccCCCCCC
Q 045580          651 YNHLSGPTPNAG  662 (764)
Q Consensus       651 ~N~l~g~~p~~~  662 (764)
                      ++++.+.+|...
T Consensus       155 nepl~~~~~~kl  166 (177)
T KOG4579|consen  155 NEPLGDETKKKL  166 (177)
T ss_pred             CCcccccCcccc
Confidence            666666666553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=9e-08  Score=92.36  Aligned_cols=216  Identities=23%  Similarity=0.277  Sum_probs=116.7

Q ss_pred             ccccCCCCCcEEECcCCcccccC-chhh-cCCCCCCEEECCCCCCCC--cchhhhhCCCCCCEEECcCCCCCCCCChhhh
Q 045580           66 TGICELKKLVELDLSKNNLYGHL-SPCL-SNLTHIKVLDLSSNQLTG--NLQSVIANIKSLEYLSLDDNNFEGSFSFNSL  141 (764)
Q Consensus        66 ~~~~~l~~L~~L~Ls~n~l~~~~-~~~l-~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l  141 (764)
                      -++...+.++.|-+.++.|...- ...| ...+.++.|||.+|.|+.  .+...+.++|.|++|+|+.|.+...|.    
T Consensus        39 ~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~----  114 (418)
T KOG2982|consen   39 LGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK----  114 (418)
T ss_pred             eeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc----
Confidence            34445556667777777765431 1223 356788888999988884  345566788888888888888763332    


Q ss_pred             ccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCC--CCccHhhhCCCCccEEEccCCCCCCc-cchH-HhhcC
Q 045580          142 KNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSL--HALPSFLLHQLDLRFIDLSHNKLQGT-FPSW-LLQNN  217 (764)
Q Consensus       142 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l--~~lp~~l~~~~~L~~L~Ls~n~l~~~-~~~~-~~~~l  217 (764)
                       .++                     .+..+|+.|-|.+..+  +.....+..++.+++|.+|.|.+.-. +... .-..-
T Consensus       115 -~lp---------------------~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s  172 (418)
T KOG2982|consen  115 -SLP---------------------LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS  172 (418)
T ss_pred             -cCc---------------------ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccc
Confidence             111                     2233455555555544  33445566666777777777643210 0000 00001


Q ss_pred             CCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccC-CccccCCCCCCEEE
Q 045580          218 TKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRI-PSSMSEMKRLESLD  296 (764)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~  296 (764)
                      +.+++|.+..|..              .+..+-|++        ...+|++..+-+..|.+.... -..+..++.+..|+
T Consensus       173 ~~v~tlh~~~c~~--------------~~w~~~~~l--------~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln  230 (418)
T KOG2982|consen  173 TEVLTLHQLPCLE--------------QLWLNKNKL--------SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN  230 (418)
T ss_pred             hhhhhhhcCCcHH--------------HHHHHHHhH--------HhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence            1233333322221              122222222        233677777777777664321 23344556666777


Q ss_pred             CCCCcccccCchhhhhCCCCCCEEEeecccccc
Q 045580          297 LSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG  329 (764)
Q Consensus       297 Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~  329 (764)
                      |+.+++...-..+.+.++++|..|.++++.+.+
T Consensus       231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            777776543333345666777777777766654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=2.3e-08  Score=96.36  Aligned_cols=156  Identities=23%  Similarity=0.197  Sum_probs=83.5

Q ss_pred             CCcEEECcCCccccc-CchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCC-CCCCCChhhhccCCCCcEE
Q 045580           73 KLVELDLSKNNLYGH-LSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN-FEGSFSFNSLKNHSKLQVF  150 (764)
Q Consensus        73 ~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L  150 (764)
                      .|++||||...|+.. +-..+..+.+|+.|.|.++++.+.+...++...+|+.|+|+.+. ++..--.-.+++++.|+.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            477778877776632 33445677778888888888777777777777788888887764 2211111235667777777


Q ss_pred             EccCCCCCCcccc-CCCCCCCCccEEEcCCCCC----CCccHhhhCCCCccEEEccCCCC-CCccchHHhhcCCCCCEEE
Q 045580          151 KLSNSLVKIETEE-FPGLPEYQLKALNLRNCSL----HALPSFLLHQLDLRFIDLSHNKL-QGTFPSWLLQNNTKLDTLY  224 (764)
Q Consensus       151 ~l~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~l----~~lp~~l~~~~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~  224 (764)
                      +++.+....+... ...--..+|+.|+++++.-    ..+..-...+++|.+||||+|.. +......++ +++.|++|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lS  344 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLS  344 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeee
Confidence            7776654322210 0000012355666665531    22223334455566666655432 222222222 445555555


Q ss_pred             ccCCc
Q 045580          225 LLNNS  229 (764)
Q Consensus       225 L~~n~  229 (764)
                      ++.|.
T Consensus       345 lsRCY  349 (419)
T KOG2120|consen  345 LSRCY  349 (419)
T ss_pred             hhhhc
Confidence            55443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.34  E-value=1.3e-08  Score=109.14  Aligned_cols=127  Identities=24%  Similarity=0.218  Sum_probs=95.4

Q ss_pred             CccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccC
Q 045580          171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISH  250 (764)
Q Consensus       171 ~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~  250 (764)
                      .|...+.+.|.+..+..++.-++.|+.|+|++|+++. ..  ....++.|++|||++|.+...+.+...-..|+.|.+++
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-VD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-hH--HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence            3888899999999999999889999999999999983 33  34589999999999999987665554444588888888


Q ss_pred             CCCCCCCChhHhhcCCCCcEEEcccCCCCccC-CccccCCCCCCEEECCCCccc
Q 045580          251 NKFSGQLPGNMGKILPELLSLNLSENGFEVRI-PSSMSEMKRLESLDLSSNNFS  303 (764)
Q Consensus       251 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~  303 (764)
                      |.++ ++- .+. ++.+|+.||+++|-+.+.- -..++.+..|+.|+|.+|.+-
T Consensus       242 N~l~-tL~-gie-~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  242 NALT-TLR-GIE-NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cHHH-hhh-hHH-hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            8876 332 233 3778888888888665421 123455667888888888775

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=1.5e-08  Score=97.62  Aligned_cols=36  Identities=22%  Similarity=0.250  Sum_probs=17.1

Q ss_pred             CCCCcEEEcccCCCCccCCccccCCCCCCEEECCCC
Q 045580          265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSN  300 (764)
Q Consensus       265 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n  300 (764)
                      +.+|+.|.+.++++...+...++.-.+|+.|+++.+
T Consensus       209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC  244 (419)
T ss_pred             HHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence            444444445444444444444444444555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=1.6e-07  Score=90.69  Aligned_cols=87  Identities=25%  Similarity=0.383  Sum_probs=67.0

Q ss_pred             CCCCCcEEECcCCccccc--CchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCC
Q 045580           70 ELKKLVELDLSKNNLYGH--LSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKL  147 (764)
Q Consensus        70 ~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  147 (764)
                      ..++++.|||.+|.|++-  +...+.++|+|++|+|+.|.+...+-..-..+.+|++|-|.+..+.-....+.+..++++
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            457899999999999853  445678999999999999999854322114567999999998877543334567788899


Q ss_pred             cEEEccCCC
Q 045580          148 QVFKLSNSL  156 (764)
Q Consensus       148 ~~L~l~~~~  156 (764)
                      +.|.++.|.
T Consensus       149 telHmS~N~  157 (418)
T KOG2982|consen  149 TELHMSDNS  157 (418)
T ss_pred             hhhhhccch
Confidence            999988774

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.29  E-value=2.1e-08  Score=107.61  Aligned_cols=127  Identities=31%  Similarity=0.396  Sum_probs=79.1

Q ss_pred             CccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEE
Q 045580          242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS  321 (764)
Q Consensus       242 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~  321 (764)
                      .|...+.+.|.+. .+...+ ..++.|+.|+|++|+++...  .+..|++|++|||++|.+. .+|.--..++. |+.|.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeee
Confidence            3445555666554 333333 33677777777777776432  6677777777777777776 56643223444 77777


Q ss_pred             eecccccceeecCCCCCCceEEcccccCCCccc-ccccCCCCCCEEeCcCCccC
Q 045580          322 LSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQ-DGLSKATSLLELDLSNNMLY  374 (764)
Q Consensus       322 l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~  374 (764)
                      +++|.++..-.+.++.+|+.||+++|-+.+.-. ..+..+..|+.|.|.+|.+-
T Consensus       239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            777777766667777777777777776654211 12334556677777777653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.25  E-value=7.6e-07  Score=85.00  Aligned_cols=162  Identities=20%  Similarity=0.270  Sum_probs=103.8

Q ss_pred             cCCCCCcEEECcCCccccc----CchhhcCCCCCCEEECCCCCCC---Ccch-------hhhhCCCCCCEEECcCCCCCC
Q 045580           69 CELKKLVELDLSKNNLYGH----LSPCLSNLTHIKVLDLSSNQLT---GNLQ-------SVIANIKSLEYLSLDDNNFEG  134 (764)
Q Consensus        69 ~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~---~~~~-------~~~~~l~~L~~L~Ls~n~l~~  134 (764)
                      ..+..++.+|||+|-|...    +...+.+-.+|+..+++.-...   ..++       .++.+|++|+.++||.|.|..
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            3467889999999988754    3445667788999888875322   1222       356788999999999999875


Q ss_pred             CCCh---hhhccCCCCcEEEccCCCCC-CccccC-----------CCCCCCCccEEEcCCCCCCCccH-----hhhCCCC
Q 045580          135 SFSF---NSLKNHSKLQVFKLSNSLVK-IETEEF-----------PGLPEYQLKALNLRNCSLHALPS-----FLLHQLD  194 (764)
Q Consensus       135 ~~~~---~~l~~l~~L~~L~l~~~~~~-~~~~~~-----------~~~~~~~L~~L~L~~n~l~~lp~-----~l~~~~~  194 (764)
                      ..|.   ..+++-+.|.+|.+++|... +....+           .....+.|+......|++...|.     .+....+
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence            5552   35677788899998888762 111111           11234557888888887754442     2333356


Q ss_pred             ccEEEccCCCCCCccc-----hHHhhcCCCCCEEEccCCcCc
Q 045580          195 LRFIDLSHNKLQGTFP-----SWLLQNNTKLDTLYLLNNSLS  231 (764)
Q Consensus       195 L~~L~Ls~n~l~~~~~-----~~~~~~l~~L~~L~L~~n~l~  231 (764)
                      |+++.+..|.|...-.     ..+ ..+.+|+.|+|..|.++
T Consensus       187 lk~vki~qNgIrpegv~~L~~~gl-~y~~~LevLDlqDNtft  227 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTMLAFLGL-FYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             ceeEEeeecCcCcchhHHHHHHHH-HHhCcceeeeccccchh
Confidence            7777777777652211     112 24567777777777665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.04  E-value=1.2e-06  Score=83.69  Aligned_cols=159  Identities=22%  Similarity=0.248  Sum_probs=79.1

Q ss_pred             CCCCccEEEccCCCCCCCCChhHhh---cCCCCcEEEcccCCCCccCCc-------------cccCCCCCCEEECCCCcc
Q 045580          239 SKHDLLRIDISHNKFSGQLPGNMGK---ILPELLSLNLSENGFEVRIPS-------------SMSEMKRLESLDLSSNNF  302 (764)
Q Consensus       239 ~~~~L~~L~ls~n~l~~~~~~~~~~---~l~~L~~L~L~~n~~~~~~~~-------------~l~~l~~L~~L~Ls~n~l  302 (764)
                      .++.|+.+++|.|.+....|..+..   .-+.|++|.+++|.+...-..             -...-|.|+++....|++
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            4455555555555554444443322   134566666666654321111             122346677777777776


Q ss_pred             cccCchhh----hhCCCCCCEEEeeccccccee-------ecCCCCCCceEEcccccCCCcc----cccccCCCCCCEEe
Q 045580          303 SGELPRQF----LSGCFSLSFLSLSDNHLQGEV-------VFPNSTNLCWLYLNNNHFSGKI----QDGLSKATSLLELD  367 (764)
Q Consensus       303 ~~~~p~~~----~~~l~~L~~L~l~~n~l~~~~-------~~~~~~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~  367 (764)
                      . ..|...    +..-..|+.+.+..|.|....       .+..+.+|+.|++..|.++...    ..+++..+.|+.|.
T Consensus       170 e-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         170 E-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             c-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            5 333322    122246667777766665331       3344566666666666665322    22334444566666


Q ss_pred             CcCCccCCCccccc------cCCCCCCEEECcCCCCC
Q 045580          368 LSNNMLYGQIPHWF------GNLSGLQFLDISENQLS  398 (764)
Q Consensus       368 L~~n~l~~~~~~~~------~~l~~L~~L~L~~n~l~  398 (764)
                      +.+|-++......+      ...++|+.|...+|.+.
T Consensus       249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             ccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            66665543322221      12345555555555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.90  E-value=1.8e-06  Score=73.97  Aligned_cols=112  Identities=29%  Similarity=0.444  Sum_probs=78.6

Q ss_pred             ccEEEcCCCCCCCccHhhh---CCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEc
Q 045580          172 LKALNLRNCSLHALPSFLL---HQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDI  248 (764)
Q Consensus       172 L~~L~L~~n~l~~lp~~l~---~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l  248 (764)
                      +..++|+.|.+..++....   ....|+..+|++|.+. .+|+.+....+.++.|+|++|.++                 
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-----------------   90 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-----------------   90 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-----------------
Confidence            5667788888776665443   3445677788888887 677766655555666555555554                 


Q ss_pred             cCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhh
Q 045580          249 SHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFL  311 (764)
Q Consensus       249 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  311 (764)
                             .+|.++.. ++.|+.|+++.|.+. ..|..+..+.++-.|+..+|... .+|...+
T Consensus        91 -------dvPeE~Aa-m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~  143 (177)
T KOG4579|consen   91 -------DVPEELAA-MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF  143 (177)
T ss_pred             -------hchHHHhh-hHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh
Confidence                   67777654 888888888888877 56777777888888888888776 6776543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=8.2e-06  Score=56.61  Aligned_cols=36  Identities=42%  Similarity=0.694  Sum_probs=16.7

Q ss_pred             ccceecccccccccccCccccCCCCCCEEECcCCcCc
Q 045580          595 EIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS  631 (764)
Q Consensus       595 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~  631 (764)
                      +|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444555555554 34444455555555555555544

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.77  E-value=5.6e-05  Score=79.06  Aligned_cols=73  Identities=18%  Similarity=0.246  Sum_probs=40.1

Q ss_pred             cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCC-cCCccCCccccCCCCCCE
Q 045580          406 NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGN-QLKGNIPNQLCHLSLLNI  484 (764)
Q Consensus       406 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~  484 (764)
                      .+..++.|++++|.++ .+|   .-..+|++|.++++.--..+|..+.  ++|+.|++++| .+. .+|.      +|+.
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~  116 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRS  116 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccce
Confidence            3566777777777665 334   1234577777776433234454332  46777777766 333 3332      3555


Q ss_pred             EeCCCCc
Q 045580          485 LDLSYNK  491 (764)
Q Consensus       485 L~Ls~n~  491 (764)
                      |+++.+.
T Consensus       117 L~L~~n~  123 (426)
T PRK15386        117 LEIKGSA  123 (426)
T ss_pred             EEeCCCC
Confidence            6665544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.74  E-value=5.4e-05  Score=69.66  Aligned_cols=83  Identities=20%  Similarity=0.283  Sum_probs=54.2

Q ss_pred             CCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee---ecCCCCCCce
Q 045580          265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCW  341 (764)
Q Consensus       265 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~  341 (764)
                      ..+...+||++|.+..  ...|..++.|.+|.+.+|+++ .|...+..-+++|+.|.+.+|.+....   .+..++.|++
T Consensus        41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            4566777888887752  235677778888888888887 565555555677777777777766432   4444555555


Q ss_pred             EEcccccCC
Q 045580          342 LYLNNNHFS  350 (764)
Q Consensus       342 L~L~~n~l~  350 (764)
                      |.+-+|.++
T Consensus       118 Ltll~Npv~  126 (233)
T KOG1644|consen  118 LTLLGNPVE  126 (233)
T ss_pred             eeecCCchh
Confidence            555555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.73  E-value=4.6e-05  Score=52.85  Aligned_cols=36  Identities=31%  Similarity=0.469  Sum_probs=27.9

Q ss_pred             CccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCC
Q 045580          171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQ  206 (764)
Q Consensus       171 ~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~  206 (764)
                      +|++|++++|+++.+|..+.++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            578888888888888877888888888888888877

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.70  E-value=2.2e-05  Score=89.22  Aligned_cols=108  Identities=18%  Similarity=0.287  Sum_probs=63.1

Q ss_pred             CCCcEEECcCCcccc-cCchhh-cCCCCCCEEECCCCCCCCc-chhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCc
Q 045580           72 KKLVELDLSKNNLYG-HLSPCL-SNLTHIKVLDLSSNQLTGN-LQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQ  148 (764)
Q Consensus        72 ~~L~~L~Ls~n~l~~-~~~~~l-~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~  148 (764)
                      .+|++||+++..... .-|..+ ..||+|++|.+++-.+... .-....++++|+.||+|+.+++ .+  ..++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHH
Confidence            577888888754331 122233 4678888888887766532 2344567788888888888776 22  4577777777


Q ss_pred             EEEccCCCCCCccccCCCCCCCCccEEEcCCCCC
Q 045580          149 VFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSL  182 (764)
Q Consensus       149 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l  182 (764)
                      +|.+.+-.+...........+++|+.||++....
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            7776654432222212223344455555554443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.68  E-value=1.9e-06  Score=87.50  Aligned_cols=133  Identities=19%  Similarity=0.095  Sum_probs=75.4

Q ss_pred             CCCCCCEEeCcCCccCCC-c-cccccCCCCCCEEECcCCCC-CCCCCCcc--cCCCccEEeccCCcccc--ccchhhcCC
Q 045580          359 KATSLLELDLSNNMLYGQ-I-PHWFGNLSGLQFLDISENQL-SGSVPSSF--NLSSLRRLYMHMNAFNG--SIPGALRRS  431 (764)
Q Consensus       359 ~l~~L~~L~L~~n~l~~~-~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~--~~~~L~~L~l~~n~l~~--~~~~~~~~~  431 (764)
                      .+..|+.++.+++.-.+. . -..-.+.++|+.|-++.++- +..-...+  +++.|+.+++..+....  .+...-.+|
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            355666776666533211 1 11123456777777777663 21111122  56777777777764321  122223567


Q ss_pred             CCCCEEEccCCcCCCcc-----hhhhhcCCCccEEEccCCcCC-ccCCccccCCCCCCEEeCCCCc
Q 045580          432 SSLTVLDLRDNQFSGSI-----PIWINEFSYLGILLLRGNQLK-GNIPNQLCHLSLLNILDLSYNK  491 (764)
Q Consensus       432 ~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~  491 (764)
                      +.|+.+.++++......     ...-..+..|..+.|+++..+ ...-+.+..+++|+.+++-+++
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            88888888877543111     112234567888888888654 3334556777888888887764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.65  E-value=4.3e-06  Score=84.94  Aligned_cols=277  Identities=20%  Similarity=0.141  Sum_probs=144.7

Q ss_pred             CCCcEEECcCCccccc--CchhhcCCCCCCEEECCCCC-CCCcchh-hhhCCCCCCEEECcCCC-CCCCCChhhhccCCC
Q 045580           72 KKLVELDLSKNNLYGH--LSPCLSNLTHIKVLDLSSNQ-LTGNLQS-VIANIKSLEYLSLDDNN-FEGSFSFNSLKNHSK  146 (764)
Q Consensus        72 ~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~  146 (764)
                      ..|+.|.+.++.=.+-  +-..-.+++++++|++.++. ++...-. .-..+++|++|++..|. ++...-......+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            4677777877654322  22344677888888888775 3322222 22457888888888753 331111123346788


Q ss_pred             CcEEEccCCCCCCccccC-CCCCCCCccEEEcCCCCCCC---ccHhhhCCCCccEEEccCCC-CCCccchHHhhcCCCCC
Q 045580          147 LQVFKLSNSLVKIETEEF-PGLPEYQLKALNLRNCSLHA---LPSFLLHQLDLRFIDLSHNK-LQGTFPSWLLQNNTKLD  221 (764)
Q Consensus       147 L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~L~~n~l~~---lp~~l~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~  221 (764)
                      |++++++.+..--....- -.-.+..++.+.+.+|.-..   +-..-..+..+..+++..+. ++..---.+...+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            888888866531111000 00112235555555543211   11222333445555554543 22111111222456677


Q ss_pred             EEEccCCcCccCC---CCCCCCCCccEEEccCCC-CCCCCChhHhhcCCCCcEEEcccCCCCc--cCCccccCCCCCCEE
Q 045580          222 TLYLLNNSLSGNF---QLPSSKHDLLRIDISHNK-FSGQLPGNMGKILPELLSLNLSENGFEV--RIPSSMSEMKRLESL  295 (764)
Q Consensus       222 ~L~L~~n~l~~~~---~~~~~~~~L~~L~ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L  295 (764)
                      .|+.+++.-.+..   .+..+.++|+.+.++.|+ ++..--..++.+.+.|+.+++..+....  .+...-.+++.|+.+
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            7777666443211   122366777777777774 3333333444556777777777765431  122223456777887


Q ss_pred             ECCCCcccccCc----hhhhhCCCCCCEEEeeccccccee---ecCCCCCCceEEccccc
Q 045580          296 DLSSNNFSGELP----RQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLNNNH  348 (764)
Q Consensus       296 ~Ls~n~l~~~~p----~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~L~~n~  348 (764)
                      .++++.......    .....++..|+.+.++++......   .+..+++|+.+++..+.
T Consensus       378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            777765431110    011124556777777777665433   55667778887777665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.64  E-value=1.5e-05  Score=90.55  Aligned_cols=157  Identities=14%  Similarity=0.135  Sum_probs=79.1

Q ss_pred             CCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCc-------------chhhh--hCCCCCCEEECcCCCCCC-
Q 045580           71 LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGN-------------LQSVI--ANIKSLEYLSLDDNNFEG-  134 (764)
Q Consensus        71 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-------------~~~~~--~~l~~L~~L~Ls~n~l~~-  134 (764)
                      .-+++..++.+.......-..+.+.. |+.|.|.+-.....             +...+  ..-.+|++||+++...-. 
T Consensus        59 ~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~  137 (699)
T KOG3665|consen   59 KFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSN  137 (699)
T ss_pred             hheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhc
Confidence            34566666666555544444444444 66666665432210             00111  112577888887754321 


Q ss_pred             CCChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCC-ccchHH
Q 045580          135 SFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQG-TFPSWL  213 (764)
Q Consensus       135 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~-~~~~~~  213 (764)
                      ..+...-..+|.|+.|.+.+..+..+.-..-..+.++|..||+++++++.+ .+++++++|++|.+.+=.+.. ..-..+
T Consensus       138 ~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L  216 (699)
T KOG3665|consen  138 GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL  216 (699)
T ss_pred             cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH
Confidence            112122234677777777665543222000111334566666666666665 556666666666666655542 112234


Q ss_pred             hhcCCCCCEEEccCCcC
Q 045580          214 LQNNTKLDTLYLLNNSL  230 (764)
Q Consensus       214 ~~~l~~L~~L~L~~n~l  230 (764)
                      | ++++|+.||+|....
T Consensus       217 F-~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  217 F-NLKKLRVLDISRDKN  232 (699)
T ss_pred             h-cccCCCeeecccccc
Confidence            4 566666666665544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.62  E-value=8.1e-05  Score=68.54  Aligned_cols=81  Identities=21%  Similarity=0.276  Sum_probs=43.4

Q ss_pred             ccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcc
Q 045580          195 LRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLS  274 (764)
Q Consensus       195 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~  274 (764)
                      =+.++|.+.++. .+.. +.....+...++|++|.+.... ....++.|..|.+.+|+|+ .+...+...+++|..|.|.
T Consensus        21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             cccccccccccc-chhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence            456677776654 2211 2223445666777777665331 2234555556666666665 4444454445555666665


Q ss_pred             cCCCC
Q 045580          275 ENGFE  279 (764)
Q Consensus       275 ~n~~~  279 (764)
                      +|++.
T Consensus        97 nNsi~  101 (233)
T KOG1644|consen   97 NNSIQ  101 (233)
T ss_pred             Ccchh
Confidence            55543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.50  E-value=0.00048  Score=72.22  Aligned_cols=55  Identities=18%  Similarity=0.229  Sum_probs=30.0

Q ss_pred             cCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccC
Q 045580          216 NNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSEN  276 (764)
Q Consensus       216 ~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n  276 (764)
                      .+.+++.|++++|.++..+   .-..+|+.|.+++|.-...+|..+   .++|++|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence            3567777777777666443   222346666666643222445433   235566666655

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.11  E-value=0.00097  Score=59.43  Aligned_cols=120  Identities=19%  Similarity=0.247  Sum_probs=43.3

Q ss_pred             HhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccce--eecCCCCC
Q 045580          261 MGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE--VVFPNSTN  338 (764)
Q Consensus       261 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~  338 (764)
                      .+...++|+.+.+.. .+.......|..+++|+.+.+.++ +. .++...+..+++++.+.+.+ .+...  ..+..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence            333345566666553 344344455566666666666553 33 45555555555566655543 22211  13444555


Q ss_pred             CceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCC
Q 045580          339 LCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGL  387 (764)
Q Consensus       339 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  387 (764)
                      |+.+.+..+ +.......|.++ .|+.+.+.. .+.......|.++++|
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            555555443 332333344444 555555543 2222333344444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.06  E-value=0.0014  Score=58.40  Aligned_cols=83  Identities=22%  Similarity=0.323  Sum_probs=33.8

Q ss_pred             cccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCC
Q 045580           67 GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSK  146 (764)
Q Consensus        67 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~  146 (764)
                      .|.+.++|+.+.+.. .+..+...+|..+++|+.+++.++ +......+|.++++|+.+.+.. .+. .++...|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence            345555666666553 344444455555555666665553 4434444555555555555543 221 223333444444


Q ss_pred             CcEEEcc
Q 045580          147 LQVFKLS  153 (764)
Q Consensus       147 L~~L~l~  153 (764)
                      |+.+++.
T Consensus        83 l~~i~~~   89 (129)
T PF13306_consen   83 LKNIDIP   89 (129)
T ss_dssp             ECEEEET
T ss_pred             ccccccC
Confidence            4444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.77  E-value=0.00083  Score=64.86  Aligned_cols=87  Identities=24%  Similarity=0.330  Sum_probs=55.4

Q ss_pred             ccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCC--CCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCC
Q 045580           68 ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSN--QLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHS  145 (764)
Q Consensus        68 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~  145 (764)
                      .-.+..|+.|++.+..++..  ..|..+++|+.|.+|.|  ++.+.++-....+++|++|++++|++.-.-....++.+.
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence            34556777777777666643  34667888888888888  555555555666788888888888876211112244455


Q ss_pred             CCcEEEccCCC
Q 045580          146 KLQVFKLSNSL  156 (764)
Q Consensus       146 ~L~~L~l~~~~  156 (764)
                      +|..|++.+|.
T Consensus       117 nL~~Ldl~n~~  127 (260)
T KOG2739|consen  117 NLKSLDLFNCS  127 (260)
T ss_pred             chhhhhcccCC
Confidence            55555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.33  E-value=0.0029  Score=61.21  Aligned_cols=69  Identities=22%  Similarity=0.320  Sum_probs=40.3

Q ss_pred             CchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCC--CCCCCCChhhhccCCCCcEEEccCCCCCC
Q 045580           88 LSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN--NFEGSFSFNSLKNHSKLQVFKLSNSLVKI  159 (764)
Q Consensus        88 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~l~~l~~L~~L~l~~~~~~~  159 (764)
                      +......+..|+.|++.+..++..  ..|-.+++|+.|.++.|  ++.+.++.. ..++++|++++++.|.+++
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~  105 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKD  105 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccc
Confidence            444455566677777777766632  23556777888888888  444444321 2344666666666665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.06  E-value=0.00025  Score=68.47  Aligned_cols=86  Identities=24%  Similarity=0.181  Sum_probs=43.3

Q ss_pred             CCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCc-cccccCCCCCCEEECc
Q 045580          315 FSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI-PHWFGNLSGLQFLDIS  393 (764)
Q Consensus       315 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~  393 (764)
                      .+.+.|+..++.+.+......++.|+.|.|+-|+|+..-  .+..|++|++|.|..|.|.... -..+.++++|+.|-|.
T Consensus        19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            344455555555554444445555555555555555332  2445555555555555554211 1234555666666666


Q ss_pred             CCCCCCCCC
Q 045580          394 ENQLSGSVP  402 (764)
Q Consensus       394 ~n~l~~~~~  402 (764)
                      .|.-.|.-+
T Consensus        97 ENPCc~~ag  105 (388)
T KOG2123|consen   97 ENPCCGEAG  105 (388)
T ss_pred             cCCcccccc
Confidence            655544433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.03  E-value=0.0012  Score=73.98  Aligned_cols=61  Identities=31%  Similarity=0.273  Sum_probs=24.7

Q ss_pred             CCCCcEEEcccCC-CCccCCccccC-CCCCCEEECCCCc-ccccCchhhhhCCCCCCEEEeecc
Q 045580          265 LPELLSLNLSENG-FEVRIPSSMSE-MKRLESLDLSSNN-FSGELPRQFLSGCFSLSFLSLSDN  325 (764)
Q Consensus       265 l~~L~~L~L~~n~-~~~~~~~~l~~-l~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~l~~n  325 (764)
                      +++|+.|+++.+. ++...-..++. +++|+.|.+.++. +++.--..+...++.|+.|+++.+
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence            4455555555544 32222222221 4455555544443 232222222334444555555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.69  E-value=0.0036  Score=35.97  Aligned_cols=18  Identities=50%  Similarity=0.813  Sum_probs=8.2

Q ss_pred             CCEEECcCCcCcccCcccc
Q 045580          620 IESLDLSHNDLSGQIPPQL  638 (764)
Q Consensus       620 L~~LdLs~N~l~~~ip~~l  638 (764)
                      |++|||++|+++ .+|+.|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444444444444 344433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.48  E-value=0.001  Score=64.46  Aligned_cols=83  Identities=22%  Similarity=0.233  Sum_probs=61.7

Q ss_pred             CCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEE
Q 045580           71 LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVF  150 (764)
Q Consensus        71 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L  150 (764)
                      +.+.+.|++.+|.++++  ....+++.|++|.||-|.|+..-|  |..|++|++|+|..|.|...-....+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45677788888888865  345788888888888888886544  77888888888888888743334456777888877


Q ss_pred             EccCCCC
Q 045580          151 KLSNSLV  157 (764)
Q Consensus       151 ~l~~~~~  157 (764)
                      -|..|..
T Consensus        94 WL~ENPC  100 (388)
T KOG2123|consen   94 WLDENPC  100 (388)
T ss_pred             hhccCCc
Confidence            7776654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.41  E-value=0.0074  Score=67.53  Aligned_cols=61  Identities=20%  Similarity=0.213  Sum_probs=29.9

Q ss_pred             CCccEEEcCCCC-CCCc--cHhhhCCCCccEEEccCCC-CCCccchHHhhcCCCCCEEEccCCcC
Q 045580          170 YQLKALNLRNCS-LHAL--PSFLLHQLDLRFIDLSHNK-LQGTFPSWLLQNNTKLDTLYLLNNSL  230 (764)
Q Consensus       170 ~~L~~L~L~~n~-l~~l--p~~l~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l  230 (764)
                      .+|+.|+++.+. ++..  ......+++|+.|.+.++. ++...-..+...++.|++|+++++..
T Consensus       243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            345555555555 3221  1112225566666655554 44333344444556666666665543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.29  E-value=0.0067  Score=34.87  Aligned_cols=19  Identities=53%  Similarity=0.677  Sum_probs=8.8

Q ss_pred             cceecccccccccccCcccc
Q 045580          596 IRALNLSHNFLSGSIPQSLS  615 (764)
Q Consensus       596 L~~L~Ls~N~l~~~~p~~l~  615 (764)
                      |+.|||++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            444555555444 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.82  E-value=0.0066  Score=57.42  Aligned_cols=84  Identities=19%  Similarity=0.228  Sum_probs=72.5

Q ss_pred             cccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEe
Q 045580          569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFN  648 (764)
Q Consensus       569 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  648 (764)
                      +...+.||++.|++- ..-..++-++.|..|++|.|++. ..|..++.+..+..+++.+|..+ ..|.++..++.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            346788999999987 45667888889999999999988 78999999999999999999988 6789999999999999


Q ss_pred             ccCCccc
Q 045580          649 VSYNHLS  655 (764)
Q Consensus       649 ls~N~l~  655 (764)
                      +-+|++.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999875

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.02  E-value=0.0023  Score=69.88  Aligned_cols=36  Identities=36%  Similarity=0.511  Sum_probs=19.4

Q ss_pred             CcEEEcccCCCCccCC----ccccCCCCCCEEECCCCccc
Q 045580          268 LLSLNLSENGFEVRIP----SSMSEMKRLESLDLSSNNFS  303 (764)
Q Consensus       268 L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~Ls~n~l~  303 (764)
                      +..|.|.+|.+.....    ..+...+.|+.|++++|.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            5566666666654322    23344455556666666554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.39  E-value=0.0028  Score=69.19  Aligned_cols=184  Identities=26%  Similarity=0.235  Sum_probs=93.7

Q ss_pred             CCCEEECCCCcccccCchhh---hhCCCCCCEEEeeccccccee------ecCCC-CCCceEEcccccCCCc----cccc
Q 045580          291 RLESLDLSSNNFSGELPRQF---LSGCFSLSFLSLSDNHLQGEV------VFPNS-TNLCWLYLNNNHFSGK----IQDG  356 (764)
Q Consensus       291 ~L~~L~Ls~n~l~~~~p~~~---~~~l~~L~~L~l~~n~l~~~~------~~~~~-~~L~~L~L~~n~l~~~----~~~~  356 (764)
                      .+..+.+.+|.+.......+   +...+.|+.|+++.|.+.+..      .+... ..+++|++..|.+++.    +...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            47788888888774433222   345667788888888777433      22222 4566677776666543    2334


Q ss_pred             ccCCCCCCEEeCcCCccCC----Ccccccc----CCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhh
Q 045580          357 LSKATSLLELDLSNNMLYG----QIPHWFG----NLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGAL  428 (764)
Q Consensus       357 l~~l~~L~~L~L~~n~l~~----~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  428 (764)
                      +.....++.++++.|.+..    .++..+.    ...++++|++++|.++......                   ....+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~-------------------l~~~l  228 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL-------------------LDEVL  228 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH-------------------HHHHH
Confidence            4456667777777776531    1111222    2344555555555544211110                   11122


Q ss_pred             cCCCC-CCEEEccCCcCCCcc----hhhhhcC-CCccEEEccCCcCCccC----CccccCCCCCCEEeCCCCcCc
Q 045580          429 RRSSS-LTVLDLRDNQFSGSI----PIWINEF-SYLGILLLRGNQLKGNI----PNQLCHLSLLNILDLSYNKFN  493 (764)
Q Consensus       429 ~~~~~-L~~L~L~~n~l~~~~----p~~~~~l-~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~  493 (764)
                      ...+. +..+++..|++.+..    ...+... ..+++++++.|.++..-    ...+..++.++++.++.|.+.
T Consensus       229 ~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  229 ASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            22333 444555555554321    1222233 45566666666665432    233444556666666666654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.84  E-value=0.17  Score=26.89  Aligned_cols=14  Identities=43%  Similarity=0.664  Sum_probs=5.4

Q ss_pred             ccEEEcCCCCCCCc
Q 045580          172 LKALNLRNCSLHAL  185 (764)
Q Consensus       172 L~~L~L~~n~l~~l  185 (764)
                      |+.|++++|+++++
T Consensus         3 L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    3 LRTLDLSNNRLTSL   16 (17)
T ss_dssp             -SEEEETSS--SSE
T ss_pred             cCEEECCCCCCCCC
Confidence            44555555554444

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.63  E-value=0.36  Score=28.89  Aligned_cols=16  Identities=50%  Similarity=0.667  Sum_probs=10.1

Q ss_pred             CCCCCEEECcCCcCcc
Q 045580          617 LKMIESLDLSHNDLSG  632 (764)
Q Consensus       617 l~~L~~LdLs~N~l~~  632 (764)
                      +++|+.|+|++|+|+.
T Consensus         1 L~~L~~L~L~~N~l~~   16 (26)
T smart00369        1 LPNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCCEEECCCCcCCc
Confidence            3556666777776663

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.63  E-value=0.36  Score=28.89  Aligned_cols=16  Identities=50%  Similarity=0.667  Sum_probs=10.1

Q ss_pred             CCCCCEEECcCCcCcc
Q 045580          617 LKMIESLDLSHNDLSG  632 (764)
Q Consensus       617 l~~L~~LdLs~N~l~~  632 (764)
                      +++|+.|+|++|+|+.
T Consensus         1 L~~L~~L~L~~N~l~~   16 (26)
T smart00370        1 LPNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCCEEECCCCcCCc
Confidence            3556666777776663

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.43  E-value=0.47  Score=28.36  Aligned_cols=15  Identities=47%  Similarity=0.736  Sum_probs=7.3

Q ss_pred             CCCCEEECCCCCCCC
Q 045580           96 THIKVLDLSSNQLTG  110 (764)
Q Consensus        96 ~~L~~L~Ls~n~l~~  110 (764)
                      ++|++|+|++|+++.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            344555555555543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.43  E-value=0.47  Score=28.36  Aligned_cols=15  Identities=47%  Similarity=0.736  Sum_probs=7.3

Q ss_pred             CCCCEEECCCCCCCC
Q 045580           96 THIKVLDLSSNQLTG  110 (764)
Q Consensus        96 ~~L~~L~Ls~n~l~~  110 (764)
                      ++|++|+|++|+++.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            344555555555543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.05  E-value=0.021  Score=54.10  Aligned_cols=87  Identities=26%  Similarity=0.260  Sum_probs=69.0

Q ss_pred             ccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCC
Q 045580           66 TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHS  145 (764)
Q Consensus        66 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~  145 (764)
                      ..+..++..+.||++.|.+. .+-.-|+.++.|..||++.|++. ..|..++.+..++.+++..|..+ ..| .+++..+
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p-~s~~k~~  111 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQP-KSQKKEP  111 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCC-ccccccC
Confidence            35677889999999999877 34456788889999999999987 67888999999999999999887 555 3477777


Q ss_pred             CCcEEEccCCC
Q 045580          146 KLQVFKLSNSL  156 (764)
Q Consensus       146 ~L~~L~l~~~~  156 (764)
                      +++++++..+.
T Consensus       112 ~~k~~e~k~~~  122 (326)
T KOG0473|consen  112 HPKKNEQKKTE  122 (326)
T ss_pred             CcchhhhccCc
Confidence            77777766554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.80  E-value=0.22  Score=29.15  Aligned_cols=13  Identities=54%  Similarity=0.841  Sum_probs=4.9

Q ss_pred             CCCEEECCCCCCC
Q 045580           97 HIKVLDLSSNQLT  109 (764)
Q Consensus        97 ~L~~L~Ls~n~l~  109 (764)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444444444444

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.39  E-value=0.43  Score=44.72  Aligned_cols=82  Identities=20%  Similarity=0.161  Sum_probs=53.7

Q ss_pred             CCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCC-cchhhhh-CCCCCCEEECcCCC-CCCCCChhhhccCCCCc
Q 045580           72 KKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-NLQSVIA-NIKSLEYLSLDDNN-FEGSFSFNSLKNHSKLQ  148 (764)
Q Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~-~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~  148 (764)
                      ..++.+|-++..|..+--+.+..++.++.|.+.+|.--+ .--+-++ -.++|+.|++++|. |+ .-....+..+++|+
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLR  179 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhH
Confidence            356788888888877666677788888888888874321 1112222 24788999999885 43 33344566777777


Q ss_pred             EEEccC
Q 045580          149 VFKLSN  154 (764)
Q Consensus       149 ~L~l~~  154 (764)
                      .|.+.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	764
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-39
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-39
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-13
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		5e-06
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		8e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		4e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  160 bits (405), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 189/696 (27%), Positives = 268/696 (38%), Gaps = 164/696 (23%)
Query: 66  TGICELKKLVELDLSKNNLYGH------LSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 119
           +G  +L  L  LDLS N++ G       LS     L H+ +   S N+++G++   ++  
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVD--VSRC 199
Query: 120 KSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLR 178
            +LE+L +  NNF     F  L + S LQ   +S N L    +       E  LK LN+ 
Sbjct: 200 VNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTE--LKLLNIS 255
Query: 179 -NCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLP 237
            N  +  +P   L  L  +++ L+ NK  G  P +L   +   DTL              
Sbjct: 256 SNQFVGPIPPLPLKSL--QYLSLAENKFTGEIPDFL---SGACDTLT------------- 297
Query: 238 SSKHDLLRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIP-SSMSEMKRLESLD 296
                   +D+S N F G +P   G               F   +P  ++ +M+ L+ LD
Sbjct: 298 -------GLDLSGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKVLD 349
Query: 297 LSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTNLCW--------LYLNNNH 348
           LS N FSGELP                 N+  G ++     NLC         LYL NN 
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL----PNLCQNPKNTLQELYLQNNG 405
Query: 349 FSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFN-L 407
           F+GKI   LS  + L+ L LS N L G IP   G+LS L+ L +  N L G +P     +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 408 SSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQ 467
            +L  L +  N   G IP  L   ++L  + L +N+ +G IP WI     L IL L  N 
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 468 LKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTE 527
             GNIP +L     L  LDL+ N FNG IP                              
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--------------------------- 558
Query: 528 FEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCN------E 581
                            +K SG+    F+  KRY   K D      G+   C+      E
Sbjct: 559 -----------------FKQSGKIAANFIAGKRYVYIKND------GMKKECHGAGNLLE 595
Query: 582 LTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIP------ 635
             G    ++  LS     N++     G    +  N   +  LD+S+N LSG IP      
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 636 -----------------------------------------PQ-LTELNFLSNFNVSYNH 653
                                                    PQ ++ L  L+  ++S N+
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715
Query: 654 LSGPTPNAGQFANFDEQNYGGNSGLCG---PRINKS 686
           LSGP P  GQF  F    +  N GLCG   PR + S
Sbjct: 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS 751

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  160 bits (404), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 190/696 (27%), Positives = 268/696 (38%), Gaps = 164/696 (23%)
Query: 66  TGICELKKLVELDLSKNNLYGH------LSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 119
           +G  +L  L  LDLS N++ G       LS     L H+ +   S N+++G++   ++  
Sbjct: 142 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVD--VSRC 196
Query: 120 KSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLR 178
            +LE+L +  NNF     F  L + S LQ   +S N L    +       E  LK LN+ 
Sbjct: 197 VNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTE--LKLLNIS 252
Query: 179 -NCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLP 237
            N  +  +P   L  L  +++ L+ NK  G  P +L   +   DTL  L           
Sbjct: 253 SNQFVGPIPPLPLKSL--QYLSLAENKFTGEIPDFL---SGACDTLTGL----------- 296
Query: 238 SSKHDLLRIDISHNKFSGQLPGNMGKILPXXXXXXXXXXGFEVRIP-SSMSEMKRLESLD 296
                    D+S N F G +P   G               F   +P  ++ +M+ L+ LD
Sbjct: 297 ---------DLSGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKVLD 346
Query: 297 LSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTNLCW--------LYLNNNH 348
           LS N FSGELP                 N+  G ++     NLC         LYL NN 
Sbjct: 347 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL----PNLCQNPKNTLQELYLQNNG 402
Query: 349 FSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFN-L 407
           F+GKI   LS  + L+ L LS N L G IP   G+LS L+ L +  N L G +P     +
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 408 SSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQ 467
            +L  L +  N   G IP  L   ++L  + L +N+ +G IP WI     L IL L  N 
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 468 LKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTE 527
             GNIP +L     L  LDL+ N FNG IP                              
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--------------------------- 555
Query: 528 FEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCN------E 581
                            +K SG+    F+  KRY   K D      G+   C+      E
Sbjct: 556 -----------------FKQSGKIAANFIAGKRYVYIKND------GMKKECHGAGNLLE 592
Query: 582 LTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIP------ 635
             G    ++  LS     N++     G    +  N   +  LD+S+N LSG IP      
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 652
Query: 636 -----------------------------------------PQ-LTELNFLSNFNVSYNH 653
                                                    PQ ++ L  L+  ++S N+
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 712
Query: 654 LSGPTPNAGQFANFDEQNYGGNSGLCG---PRINKS 686
           LSGP P  GQF  F    +  N GLCG   PR + S
Sbjct: 713 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS 748

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 122/293 (41%), Gaps = 52/293 (17%)
Query: 401 VPSSF-NLSSLRRLYMH-MNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYL 458
           +PSS  NL  L  LY+  +N   G IP A+ + + L  L +     SG+IP ++++   L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 459 GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLW 518
             L    N L G +P  +  L  L  +    N+ +G IP             + GSF   
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP------------DSYGSFSKL 175
Query: 519 ETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFS 578
            T+  IS                              +T K   ++    L ++   D S
Sbjct: 176 FTSMTISRNR---------------------------LTGKIPPTFANLNLAFV---DLS 205
Query: 579 CNELTGDIPSEIGSLSEIRALNLSHNFLS---GSIPQSLSNLKMIESLDLSHNDLSGQIP 635
            N L GD     GS    + ++L+ N L+   G +  S    K +  LDL +N + G +P
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLP 261
Query: 636 PQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCT 688
             LT+L FL + NVS+N+L G  P  G    FD   Y  N  LCG  +  +CT
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL-PACT 313

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 284 SSMSEMKRLESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQG--EVVFPNSTNLCW 341
           S++ E+  L  L L+ N     LP                +N LQ   + VF   TNL +
Sbjct: 79  SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 342 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSV 401
           L L +N      +    K T+L ELDLS N L       F  L+ L+ L + +NQL  SV
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SV 196
Query: 402 PSSF--NLSSLRRLYMHMNAFNGSIPG 426
           P      L+SL+ +++H N ++ + PG
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCPG 223

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 342 LYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGS 400
           L LN+N       DGL  +   L++L+L  N L G  P+ F   S +Q L + EN++   
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
Query: 401 VPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPI-WINEFSYL 458
               F  L  L+ L ++ N  +  +PG+    +SLT L+L  N F+ +  + W  E  +L
Sbjct: 94  SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WL 151
Query: 459 GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKF 492
               L G   +   P++   +  + I DL +++F
Sbjct: 152 RKKSLNGGAARCGAPSK---VRDVQIKDLPHSEF 182

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 157/386 (40%), Gaps = 62/386 (16%)
Query: 324 DNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGN 383
           +N +       N TNL  L L NN  +    D L   T+L  L+LS+N +   I    G 
Sbjct: 94  NNQIADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTI-SDISALSG- 149
Query: 384 LSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQ 443
           L+ LQ L  S NQ++   P + NL++L RL +  N    S    L + ++L  L   +NQ
Sbjct: 150 LTSLQQLSFSSNQVTDLKPLA-NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQ 206
Query: 444 FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVC-FAN 502
            S   P+ I   + L  L L GNQLK      L  L+ L  LDL+ N+ +   P+     
Sbjct: 207 ISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTK 262
Query: 503 VTLWTLGQAAGSFVLWETTQRIS--TEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKR 560
           +T   LG    S         IS      A  N  L  ++++     S  + + ++T   
Sbjct: 263 LTELKLGANQIS--------NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT--L 312
Query: 561 YESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMI 620
           Y +   DI                   S + SL++++ L  S+N +S     SL+NL  I
Sbjct: 313 YFNNISDI-------------------SPVSSLTKLQRLFFSNNKVSDV--SSLANLTNI 351
Query: 621 ESLDLSHNDLSGQIP-PQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLC 679
             L   HN +S   P   LT +  L   + ++ +   P             NY  N  + 
Sbjct: 352 NWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN--APV------------NYKANVSI- 396
Query: 680 GPRINKSCTTVLEPPETPSDGAEEDE 705
            P   K+ T  L  P T SDG    E
Sbjct: 397 -PNTVKNVTGALIAPATISDGGSYTE 421

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 284 SSMSEMKRLESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQG--EVVFPNSTNLCW 341
           S++ E+  L  L L+ N     LP                +N LQ   + VF   TNL +
Sbjct: 79  SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 342 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSV 401
           LYL +N      +    K T+L  LDL NN L       F  L+ L+ L +++NQL  SV
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SV 196
Query: 402 PSSF--NLSSLRRLYMHMNAFN 421
           P      L+SL  +++  N ++
Sbjct: 197 PDGVFDRLTSLTHIWLLNNPWD 218

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 332 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLD 391
           VF   T+L  LYL  N          +K TSL  L+LS N L       F  L+ L+ L 
Sbjct: 47  VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106
Query: 392 ISENQLSGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449
           ++ NQL  S+P      L+ L+ L ++ N       G   R +SL  + L DN +  + P
Sbjct: 107 LNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Query: 450 ------IWINEFS 456
                  WIN+ S
Sbjct: 166 GIRYLSEWINKHS 178

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	764
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-163
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-90
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-64
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-69
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-68
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-60
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-49
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-31
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-50
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-40
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-34
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-38
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-36
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-30
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-30
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-27
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-25
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-26
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-15
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-10
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-10
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	5e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	6e-05

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  490 bits (1264), Expect = e-163
 Identities = 193/637 (30%), Positives = 275/637 (43%), Gaps = 53/637 (8%)

Query: 71  LKKLVELDLSKNNLYGHLSPCL---SNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 127
           L  L  LDLS N++ G              +K L +S N+++G++   ++   +LE+L +
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDV 207

Query: 128 DDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLH-ALP 186
             NNF        L + S LQ                          L++    L     
Sbjct: 208 SSNNFSTGIP--FLGDCSALQH-------------------------LDISGNKLSGDFS 240

Query: 187 SFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF--QLPSSKHDLL 244
             +    +L+ +++S N+  G  P   L++   L  L L  N  +G     L  +   L 
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSGACDTLT 297

Query: 245 RIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIP-SSMSEMKRLESLDLSSNNFS 303
            +D+S N F G +P   G     L SL LS N F   +P  ++ +M+ L+ LDLS N FS
Sbjct: 298 GLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 304 GELPRQFLSGCFSLSFLSLSDNHLQGEV----VFPNSTNLCWLYLNNNHFSGKIQDGLSK 359
           GELP    +   SL  L LS N+  G +           L  LYL NN F+GKI   LS 
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416

Query: 360 ATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMN 418
            + L+ L LS N L G IP   G+LS L+ L +  N L G +P     + +L  L +  N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

Query: 419 AFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCH 478
              G IP  L   ++L  + L +N+ +G IP WI     L IL L  N   GNIP +L  
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536

Query: 479 LSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLEL 538
              L  LDL+ N FNG IP      +                      +      + LE 
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596

Query: 539 SEVKHFYKASGQRGIEFMTKKRYESYKGDI------LNYMTGLDFSCNELTGDIPSEIGS 592
                  +   +             Y G           M  LD S N L+G IP EIGS
Sbjct: 597 Q--GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654

Query: 593 LSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYN 652
           +  +  LNL HN +SGSIP  + +L+ +  LDLS N L G+IP  ++ L  L+  ++S N
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714

Query: 653 HLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTT 689
           +LSGP P  GQF  F    +  N GLCG  + +   +
Sbjct: 715 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS 751

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  311 bits (798), Expect = 9e-95
 Identities = 132/451 (29%), Positives = 198/451 (43%), Gaps = 43/451 (9%)

Query: 64  VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSV--IANIKS 121
           V++ +  L  L  L LS +++ G +         +  LDLS N L+G + ++  + +   
Sbjct: 69  VSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 122 LEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNC 180
           L++L++  N  +     +     + L+V  LS NS+               + +      
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG-------ANVVGWVLSDGCGE- 179

Query: 181 SLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSK 240
                         L+ + +S NK+ G        N   L+ L + +N+ S         
Sbjct: 180 --------------LKHLAISGNKISGDVDVSRCVN---LEFLDVSSNNFSTGIPFLGDC 222

Query: 241 HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSN 300
             L  +DIS NK SG     +     EL  LN+S N F   IP     +K L+ L L+ N
Sbjct: 223 SALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAEN 279

Query: 301 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS----TNLCWLYLNNNHFSGKI-QD 355
            F+GE+P      C +L+ L LS NH  G    P      + L  L L++N+FSG++  D
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGA--VPPFFGSCSLLESLALSSNNFSGELPMD 337

Query: 356 GLSKATSLLELDLSNNMLYGQIPHWFGNLSG-LQFLDISENQLSGSVPSSF---NLSSLR 411
            L K   L  LDLS N   G++P    NLS  L  LD+S N  SG +  +      ++L+
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397

Query: 412 RLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGN 471
            LY+  N F G IP  L   S L  L L  N  SG+IP  +   S L  L L  N L+G 
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457

Query: 472 IPNQLCHLSLLNILDLSYNKFNGPIPVCFAN 502
           IP +L ++  L  L L +N   G IP   +N
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  298 bits (765), Expect = 4e-90
 Identities = 134/451 (29%), Positives = 204/451 (45%), Gaps = 50/451 (11%)

Query: 69  CELKKLVELDLSKNNLY---GHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
           C   K+  +DLS   L      +S  L +LT ++ L LS++ + G++        SL  L
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSL 105

Query: 126 SLDDNNFEGSF-SFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLH 183
            L  N+  G   +  SL + S L+   +S N+L      +FPG        L L +    
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL------DFPGKVSGG---LKLNS---- 152

Query: 184 ALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNN--TKLDTLYLLNNSLSGNFQLPSSKH 241
                      L  +DLS N + G      + ++   +L  L +  N +SG+  +    +
Sbjct: 153 -----------LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 201

Query: 242 DLLRIDISHNKFSGQLP--GNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSS 299
            L  +D+S N FS  +P  G+       L  L++S N        ++S    L+ L++SS
Sbjct: 202 -LEFLDVSSNNFSTGIPFLGD----CSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 300 NNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLNNNHFSGKIQDG 356
           N F G +P        SL +LSL++N   GE+   +      L  L L+ NHF G +   
Sbjct: 257 NQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313

Query: 357 LSKATSLLELDLSNNMLYGQIP-HWFGNLSGLQFLDISENQLSGSVPSSF-NLS-SLRRL 413
               + L  L LS+N   G++P      + GL+ LD+S N+ SG +P S  NLS SL  L
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373

Query: 414 YMHMNAFNGSIPGALRRS--SSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGN 471
            +  N F+G I   L ++  ++L  L L++N F+G IP  ++  S L  L L  N L G 
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433

Query: 472 IPNQLCHLSLLNILDLSYNKFNGPIPVCFAN 502
           IP+ L  LS L  L L  N   G IP     
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  227 bits (582), Expect = 3e-64
 Identities = 104/436 (23%), Positives = 164/436 (37%), Gaps = 108/436 (24%)

Query: 67  GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 126
                  L EL L  N   G + P LSN + +  L LS N L+G + S + ++  L  L 
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448

Query: 127 LDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALP 186
           L  N  EG                                                  +P
Sbjct: 449 LWLNMLEGE-------------------------------------------------IP 459

Query: 187 SFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRI 246
             L++   L  + L  N L G  PS  L N T L+ +                       
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWI----------------------- 495

Query: 247 DISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGEL 306
            +S+N+ +G++P  +G+ L  L  L LS N F   IP+ + + + L  LDL++N F+G +
Sbjct: 496 SLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 307 PRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYL--NNNHFSGKIQDGLSKATS 362
           P              ++ N + G+      N       +   N   F G   + L++ ++
Sbjct: 555 PA-----AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609

Query: 363 LLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFN 421
               ++++ +  G     F N   + FLD+S N LSG +P    ++  L  L +  N  +
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 422 GSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSL 481
           GSIP  +     L +LDL                S         N+L G IP  +  L++
Sbjct: 670 GSIPDEVGDLRGLNILDL----------------SS--------NKLDGRIPQAMSALTM 705

Query: 482 LNILDLSYNKFNGPIP 497
           L  +DLS N  +GPIP
Sbjct: 706 LTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  141 bits (357), Expect = 8e-35
 Identities = 54/266 (20%), Positives = 96/266 (36%), Gaps = 53/266 (19%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
             I  L+ L  L LS N+  G++   L +   +  LDL++N   G + + +         
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK--- 564

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
            +  N   G   +  +KN    +    + +L++ +                         
Sbjct: 565 -IAANFIAGKR-YVYIKNDGMKKECHGAGNLLEFQGI----------------------R 600

Query: 186 PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 245
              L         +++     G                         N         ++ 
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTF------------------DNNGS------MMF 636

Query: 246 IDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGE 305
           +D+S+N  SG +P  +G  +P L  LNL  N     IP  + +++ L  LDLSSN   G 
Sbjct: 637 LDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695

Query: 306 LPRQFLSGCFSLSFLSLSDNHLQGEV 331
           +P Q +S    L+ + LS+N+L G +
Sbjct: 696 IP-QAMSALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.6 bits (197), Expect = 2e-15
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 569 LNYMTGLDFSCNELTGDIPS--EIGSLSEIRALNLSHNFLSGSIPQS-LSNLKMIESLDL 625
              +T LD S N L+G + +   +GS S ++ LN+S N L      S    L  +E LDL
Sbjct: 99  SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158

Query: 626 SHNDLSGQIPPQLTELNFLSN---FNVSYNHLSGPTP 659
           S N +SG         +         +S N +SG   
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.6 bits (192), Expect = 7e-15
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIP--QSLSNLKMIESLDLS 626
           L  +  L  S + + G +       + + +L+LS N LSG +    SL +   ++ L++S
Sbjct: 76  LTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134

Query: 627 HNDLSGQIP-PQLTELNFLSNFNVSYNHLSGPTP 659
            N L          +LN L   ++S N +SG   
Sbjct: 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.4 bits (181), Expect = 1e-13
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 573 TGLDFSCNELT---GDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHND 629
           T +D S   L      + S + SL+ + +L LS++ ++GS+         + SLDLS N 
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNS 111

Query: 630 LSGQIPP--QLTELNFLSNFNVSYNHLSGPTP 659
           LSG +     L   + L   NVS N L  P  
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.5 bits (163), Expect = 2e-11
 Identities = 36/155 (23%), Positives = 54/155 (34%), Gaps = 31/155 (20%)

Query: 60  LTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 119
                +  +  L      +++     GH SP   N   +  LD+S N L+G +   I ++
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 120 KSLEYLSLDDNNFEGS--FSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALN 176
             L  L+L  N+  GS       L+    L +  LS N L         G          
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRG---LNILDLSSNKLD--------G---------- 694

Query: 177 LRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPS 211
                   +P  +     L  IDLS+N L G  P 
Sbjct: 695 -------RIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.5 bits (137), Expect = 3e-08
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 592 SLSEIRALNLSHNFLS---GSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFN 648
              ++ +++LS   L+    ++  SL +L  +ESL LS++ ++G +         L++ +
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106

Query: 649 VSYNHLSGPTPNAGQFAN 666
           +S N LSGP        +
Sbjct: 107 LSRNSLSGPVTTLTSLGS 124

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  286 bits (733), Expect = 2e-86
 Identities = 125/651 (19%), Positives = 219/651 (33%), Gaps = 70/651 (10%)

Query: 60  LTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 119
           L            +L  LD+  N +          L  +KVL+L  N+L+       A  
Sbjct: 37  LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96

Query: 120 KSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLR 178
            +L  L L  N+ +     N       L    LS N L   +      L    L+ L L 
Sbjct: 97  TNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE--NLQELLLS 153

Query: 179 NCSLHALPSFLLHQLD---LRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSG--- 232
           N  + AL S  L       L+ ++LS N+++   P        +L  L+L N  L     
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLT 212

Query: 233 -NFQLPSSKHDLLRIDISHNKFSGQLPGNMGKI-LPELLSLNLSENGFEVRIPSSMSEMK 290
               L  +   +  + +S+++ S         +    L  L+LS N   V    S + + 
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272

Query: 291 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-----------VFPNSTNL 339
           +LE   L  NN           G F++ +L+L  +  +  +            F     L
Sbjct: 273 QLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 340 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ--IPHWFGNL--SGLQFLDISEN 395
             L + +N   G   +  +   +L  L LSN+    +      F +L  S L  L++++N
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 396 QLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPG-ALRRSSSLTVLDLRDNQFSGSIPIWIN 453
           ++S     +F  L  L  L + +N     + G   R   ++  + L  N++         
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451

Query: 454 EFSYLGILLLRGNQLKG--NIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVT-LWTLGQ 510
               L  L+LR   LK   + P+    L  L ILDLS N            +  L  L  
Sbjct: 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL-- 509

Query: 511 AAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILN 570
                             +  +N+   L +                       Y    L+
Sbjct: 510 ------------------DLQHNNLARLWK---------------HANPGGPIYFLKGLS 536

Query: 571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDL 630
           ++  L+   N            L E++ ++L  N L+       +N   ++SL+L  N +
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

Query: 631 SGQIPPQL-TELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCG 680
           +             L+  ++ +N       +   F N+  + +     L  
Sbjct: 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  214 bits (548), Expect = 3e-60
 Identities = 90/509 (17%), Positives = 170/509 (33%), Gaps = 46/509 (9%)

Query: 171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSL 230
             +  +  +  L  +P  L    ++  ++L+HN+L+   P+      ++L +L +  N++
Sbjct: 5   SHEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTI 61

Query: 231 SGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMK 290
           S                +                LP L  LNL  N        + +   
Sbjct: 62  SK---------------LEPELCQK---------LPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 291 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNH 348
            L  L L SN+    +         +L  L LS N L            NL  L L+NN 
Sbjct: 98  NLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 349 FSGKIQDGLS--KATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF- 405
                 + L     +SL +L+LS+N +    P  F  +  L  L ++  QL  S+     
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 406 ---NLSSLRRLYMHMNAFNGSIPGALR--RSSSLTVLDLRDNQFSGSIPIWINEFSYLGI 460
                +S+R L +  +  + +        + ++LT+LDL  N  +            L  
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276

Query: 461 LLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVC-FANVTLWTLGQAAGSFVLWE 519
             L  N ++    + L  L  +  L+L  +     I +     +  ++         L  
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 520 TTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSC 579
               I        N    L  +K+   ++    +  +T + + S     L+    L+ + 
Sbjct: 337 EDNDIPGIKS---NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI---LNLTK 390

Query: 580 NELTGDIPSEIGSLSEIRALNLSHNFLSGSIP-QSLSNLKMIESLDLSHNDLSGQIPPQL 638
           N+++         L  +  L+L  N +   +  Q    L+ I  + LS+N          
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 639 TELNFLSNFNVSYNHLSGPTPNAGQFANF 667
             +  L    +    L     +   F   
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  211 bits (539), Expect = 6e-59
 Identities = 97/457 (21%), Positives = 170/457 (37%), Gaps = 46/457 (10%)

Query: 56  SGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSV 115
           S    T F+     +   L  LDLS NNL    +   + L  ++   L  N +       
Sbjct: 235 STTSNTTFLG---LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291

Query: 116 IANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKAL 175
           +  + ++ YL+L  +  + S S  SL                KI+   F  L    L+ L
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLP---------------KIDDFSFQWLK--CLEHL 334

Query: 176 NLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQ-GTFPSWLLQN--NTKLDTLYLLNNSLS 231
           N+ +  +  + S +   L +L+++ LS++     T  +    +  ++ L  L L  N +S
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394

Query: 232 GNFQLPSSK-HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMK 290
                  S    L  +D+  N+   +L G   + L  +  + LS N +     +S + + 
Sbjct: 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454

Query: 291 RLESLDLSSNNFSG-ELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNN 347
            L+ L L        +          +L+ L LS+N++    + +      L  L L +N
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

Query: 348 HFS--------GKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSG 399
           + +        G     L   + L  L+L +N         F +L  L+ +D+  N L+ 
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 400 SVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRS-SSLTVLDLRDNQFSGSIPI------W 451
              S F N  SL+ L +  N            +  +LT LD+R N F  +         W
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634

Query: 452 INEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLS 488
           INE ++  I  L  +    N P       +      S
Sbjct: 635 INE-THTNIPEL-SSHYLCNTPPHYHGFPVRLFDTSS 669

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  111 bits (280), Expect = 1e-25
 Identities = 37/174 (21%), Positives = 58/174 (33%), Gaps = 4/174 (2%)

Query: 336 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISEN 395
           + +      ++   + ++ D L   T++  L+L++N L       F   S L  LD+  N
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 396 QLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINE 454
            +S   P     L  L+ L +  N  +          ++LT L L  N           +
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 455 FSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTL 508
              L  L L  N L          L  L  L LS NK               +L
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  237 bits (608), Expect = 3e-69
 Identities = 93/464 (20%), Positives = 161/464 (34%), Gaps = 19/464 (4%)

Query: 60  LTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 119
           +            +L  L L+ N L       LS    +K L      ++      + N 
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 120 KSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLR 178
           K+LE L L  N+   S          KL+V     N++  +  E+   L +    +LNL 
Sbjct: 129 KTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187

Query: 179 NCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNN-TKLDTLYLLNNSL---SGNF 234
              +  +          + ++    +        L  +    L      +      S   
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 235 QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLES 294
                +  +  I++  + F   +  N       L  L+L+       +PS +  +  L+ 
Sbjct: 248 FEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKK 305

Query: 295 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV---FPNSTNLCWLYLNNNH--F 349
           L LS+N F   L +   S   SL+ LS+  N  + E+      N  NL  L L+++    
Sbjct: 306 LVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

Query: 350 SGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF--NL 407
           S      L   + L  L+LS N         F     L+ LD++  +L      S   NL
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 408 SSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLG---ILLLR 464
             L+ L +  +  + S         +L  L+L+ N F        N    LG   IL+L 
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 465 GNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTL 508
              L     +    L ++N +DLS+N+         +++    L
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  208 bits (532), Expect = 1e-58
 Identities = 80/439 (18%), Positives = 139/439 (31%), Gaps = 16/439 (3%)

Query: 74  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 133
              L+ S N L    +   S L ++  LDL+  Q+    +    +   L+ L L  N   
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 134 GSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQ 192
              +  +L     L+        +  I+           L++L L +  + ++       
Sbjct: 95  -FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK--TLESLYLGSNHISSIKLPKGFP 151

Query: 193 L-DLRFIDLSHNKLQGTFPSWLLQ-NNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISH 250
              L+ +D  +N +       +         +L L  N ++G             ++   
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 251 NKFSGQ-LPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKR--LESLDLSSNNFSGELP 307
            +       G     +  L      +   E   P+    +    +ES++L  + F     
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

Query: 308 RQFLSGCFSLSFLSLSDNHLQG-EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL 366
             F      L  L L+  HL          + L  L L+ N F    Q   S   SL  L
Sbjct: 272 NTF-HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 367 DLSNNMLYGQI-PHWFGNLSGLQFLDISENQLSGSVPSSF---NLSSLRRLYMHMNAFNG 422
            +  N    ++      NL  L+ LD+S + +  S   +    NLS L+ L +  N    
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 423 SIPGALRRSSSLTVLDLRDNQFSGSIP-IWINEFSYLGILLLRGNQLKGNIPNQLCHLSL 481
               A +    L +LDL   +               L +L L  + L  +       L  
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450

Query: 482 LNILDLSYNKFNGPIPVCF 500
           L  L+L  N F        
Sbjct: 451 LQHLNLQGNHFPKGNIQKT 469

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  207 bits (530), Expect = 3e-58
 Identities = 78/448 (17%), Positives = 145/448 (32%), Gaps = 16/448 (3%)

Query: 60  LTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 119
           ++      +   K L  L L  N++     P       +KVLD  +N +    +  ++++
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176

Query: 120 KSLEYLSLD-DNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLR 178
           +    LSL+ + N        +  +     +       + +  +         L      
Sbjct: 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 179 NCSLHALPSFL---LHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQ 235
           +     +   +   L ++ +  I+L  +       +      + L  L L    LS    
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF-HCFSGLQELDLTATHLSELPS 295

Query: 236 LPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSM-SEMKRLES 294
                  L ++ +S NKF   L        P L  L++  N   + + +     ++ L  
Sbjct: 296 GLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354

Query: 295 LDLSSNNFSG-ELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSG 351
           LDLS ++    +     L     L  L+LS N         F     L  L L       
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 352 KIQDG-LSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF----N 406
           K           L  L+LS+++L       F  L  LQ L++  N               
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 407 LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGN 466
           L  L  L +     +     A      +  +DL  N+ + S    ++    +  L L  N
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533

Query: 467 QLKGNIPNQLCHLSLLNILDLSYNKFNG 494
            +   +P+ L  LS    ++L  N  + 
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  195 bits (497), Expect = 9e-54
 Identities = 88/388 (22%), Positives = 145/388 (37%), Gaps = 18/388 (4%)

Query: 73  KLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN--IKSLEYLSLDDN 130
             + L+L+ N++   + P   +    + L+    Q    +   + N  I+SL   + +D 
Sbjct: 180 TNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 131 NFEG--SFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPS 187
           + E      F  L   S ++   L  +    I +  F       L+ L+L    L  LPS
Sbjct: 239 DDEDISPAVFEGLCEMS-VESINLQKHYFFNISSNTFHCFS--GLQELDLTATHLSELPS 295

Query: 188 FLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKH--DLLR 245
            L+    L+ + LS NK +         N   L  L +  N+          ++  +L  
Sbjct: 296 GLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354

Query: 246 IDISHNKFSG-QLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSG 304
           +D+SH+            + L  L SLNLS N        +  E  +LE LDL+      
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 305 ELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQ---DGLSK 359
           +  +        L  L+LS + L    E +F     L  L L  NHF        + L  
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 360 ATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNA 419
              L  L LS   L     H F +L  +  +D+S N+L+ S   + +      L +  N 
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNH 534

Query: 420 FNGSIPGALRRSSSLTVLDLRDNQFSGS 447
            +  +P  L   S    ++LR N    +
Sbjct: 535 ISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  171 bits (435), Expect = 2e-45
 Identities = 81/418 (19%), Positives = 137/418 (32%), Gaps = 44/418 (10%)

Query: 99  KVLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSL 156
           K  +  +  L      +   +  S E L    N    +    +      L    L+   +
Sbjct: 15  KTYNCENLGLN----EIPGTLPNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQI 69

Query: 157 VKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLD-LRFIDLSHNKLQGTFPSWLLQ 215
             I  + F      +L  L L    L  +    L     L+ +      +        L 
Sbjct: 70  YWIHEDTFQSQH--RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI-PLH 126

Query: 216 NNTKLDTLYLLNNSLSG-NFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPEL--LSLN 272
           N   L++LYL +N +S            L  +D  +N        +M   L +   LSLN
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS-LQQATNLSLN 185

Query: 273 LSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQF-LSGCFSLSFLSLSDNHLQGEV 331
           L+ N     I     +    +SL+         + +    S   SL   +  D       
Sbjct: 186 LNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM------ 238

Query: 332 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLD 391
                        ++   S  + +GL +  S+  ++L  +  +    + F   SGLQ LD
Sbjct: 239 -------------DDEDISPAVFEGLCE-MSVESINLQKHYFFNISSNTFHCFSGLQELD 284

Query: 392 ISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIW 451
           ++   LS        LS+L++L +  N F      +     SLT L ++ N     +   
Sbjct: 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG-- 342

Query: 452 INEFSYLG---ILLLRGNQLK--GNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVT 504
                 L     L L  + ++       QL +LS L  L+LSYN+        F    
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  151 bits (383), Expect = 1e-38
 Identities = 67/384 (17%), Positives = 122/384 (31%), Gaps = 34/384 (8%)

Query: 293 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFS 350
           ++ +  +   + E+P    +   S   L  S N L       F    NL +L L      
Sbjct: 15  KTYNCENLGLN-EIPGTLPN---STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 351 GKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSS 409
              +D       L  L L+ N L             L+ L   +  +S        N  +
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 410 LRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLR--GNQ 467
           L  LY+  N  +         +  L VLD ++N         ++       L L   GN 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 468 LKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFV-LWETTQRIST 526
           + G I       ++   L+    +    I     N T+ +L       +   + +  +  
Sbjct: 191 IAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 527 EFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGL---DFSCNELT 583
                   ++ L                   K  + +   +  +  +GL   D +   L+
Sbjct: 250 GLCEMSVESINLQ------------------KHYFFNISSNTFHCFSGLQELDLTATHLS 291

Query: 584 GDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQ-LTELN 642
            ++PS +  LS ++ L LS N        S SN   +  L +  N    ++    L  L 
Sbjct: 292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 643 FLSNFNVSYNHLSGPTPNAGQFAN 666
            L   ++S++ +        Q  N
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRN 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 575 LDFSCNELTG-DIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG- 632
           LD +   L   D  S   +L  ++ LNLSH+ L  S  Q    L  ++ L+L  N     
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 633 --QIPPQLTELNFLSNFNVSYNHLSGPTPNA 661
             Q    L  L  L    +S+  LS    +A
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQI 634
           L F    ++      + +   + +L L  N +S          + ++ LD  +N +    
Sbjct: 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169

Query: 635 PPQLTELNFLSN--FNVSYNHLSGPTPNAGQFANFDEQNYGGNS 676
              ++ L   +N   N++ N ++G  P A   A F   N+GG  
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQ---SLSNLKMIESLDL 625
           L+ +  L+ S + L          L  ++ LNL  N       Q   SL  L  +E L L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 626 SHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA 661
           S  DLS       T L  +++ ++S+N L+  +  A
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 5e-08
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 575 LDFSCNELTGDIPSEIGS---LSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS 631
           L+   N        +  S   L  +  L LS   LS     + ++LKM+  +DLSHN L+
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 632 GQIPPQLTELNFLSNFNVSYNHLSGPTPNA 661
                 L+ L  +   N++ NH+S   P+ 
Sbjct: 514 SSSIEALSHLKGIY-LNLASNHISIILPSL 542

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 6e-08
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQI 634
           L  S  +L+        SL  +  ++LSHN L+ S  ++LS+LK I  L+L+ N +S  +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIIL 539

Query: 635 PPQLTELNFLSNFNVSYNHLSG 656
           P  L  L+     N+  N L  
Sbjct: 540 PSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 569 LNYMTGLDFSCNELT--GDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLS 626
           L  +  LD S +++        ++ +LS +++LNLS+N       ++      +E LDL+
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 627 HNDLSGQIPP-QLTELNFLSNFNVSYNHLSGPTPNA 661
              L  +        L+ L   N+S++ L   +   
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
           L  M  +D S N LT      +  L  I  LNL+ N +S  +P  L  L    +++L  N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 629 DLSG 632
            L  
Sbjct: 558 PLDC 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  234 bits (600), Expect = 5e-68
 Identities = 90/452 (19%), Positives = 152/452 (33%), Gaps = 24/452 (5%)

Query: 68  ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 127
              L  L  L L+ N +        S L+ ++ L      L       I ++K+L+ L++
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 128 DDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLP--EYQLKALNLRNCSLHA 184
             N  +         N + L+   LS N +  I   +   L        +L+L    ++ 
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 185 LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPS------ 238
           +      ++ L  + L +N          +Q    L+   L+         L        
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 239 ---SKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESL 295
                  +    +++  +      ++   L  + S +L     E     S       + L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHL 309

Query: 296 DLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNH--FSGKI 353
           +L +  F    P   L     L+F S    +        +  +L +L L+ N   F G  
Sbjct: 310 ELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCC 365

Query: 354 QDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF--NLSSLR 411
                  TSL  LDLS N +   +   F  L  L+ LD   + L      S   +L +L 
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 412 RLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSI-PIWINEFSYLGILLLRGNQLKG 470
            L +       +  G     SSL VL +  N F  +  P    E   L  L L   QL+ 
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 471 NIPNQLCHLSLLNILDLSYNKFNGPIPVCFAN 502
             P     LS L +L++S+N F       +  
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  214 bits (547), Expect = 1e-60
 Identities = 98/457 (21%), Positives = 160/457 (35%), Gaps = 27/457 (5%)

Query: 60  LTVFVNTGICELKKLVELDLSKNNL-YGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN 118
           L    N  I  LK L EL+++ N +    L    SNLT+++ LDLSSN++     + +  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 119 IKSLEYLSLD---DNNFEGSFSFNSLKNHSKLQVFKLSNSL--VKIETEEFPGLPEYQLK 173
           +  +  L+L      N        + K   +L    L N+   + +      GL   ++ 
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230

Query: 174 ALNLRNCSLHALPSFL-------LHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLL 226
            L L                   L  L +    L++          L    T + +  L+
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290

Query: 227 NNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSM 286
           + ++       S       +++ + KF  Q P    K L  L   +            S 
Sbjct: 291 SVTIERVKDF-SYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGN-----AFSE 343

Query: 287 SEMKRLESLDLSSNNFSG-ELPRQFLSGCFSLSFLSLSDNHLQG-EVVFPNSTNLCWLYL 344
            ++  LE LDLS N  S      Q   G  SL +L LS N +      F     L  L  
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403

Query: 345 NNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPS 403
            +++     +        +L+ LD+S+          F  LS L+ L ++ N    +   
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 404 SF--NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGIL 461
                L +L  L +         P A    SSL VL++  N F           + L +L
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

Query: 462 LLRGNQLKGNIPNQLCHL-SLLNILDLSYNKFNGPIP 497
               N +  +   +L H  S L  L+L+ N F     
Sbjct: 524 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  202 bits (517), Expect = 2e-56
 Identities = 90/442 (20%), Positives = 153/442 (34%), Gaps = 27/442 (6%)

Query: 74  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 133
              LDLS N L    S    +   ++VLDLS  ++         ++  L  L L  N  +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 134 GSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHAL--PSFLL 190
              +  +    S LQ       +L  +E      L    LK LN+ +  + +   P +  
Sbjct: 90  S-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK--TLKELNVAHNLIQSFKLPEYFS 146

Query: 191 HQLDLRFIDLSHNKLQGTFPSWL--LQN-NTKLDTLYLLNNSLSGNFQLPSSKHDLLRID 247
           +  +L  +DLS NK+Q  + + L  L        +L L  N ++        +  L ++ 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 248 ISHNKFSGQLPGNMGKILPELLSLNLSENGF------EVRIPSSMSEMKRL--ESLDLSS 299
           + +N  S  +     + L  L    L    F      E    S++  +  L  E   L+ 
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 300 NNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSK 359
            ++  +      +   ++S  SL    ++    F  +     L L N  F       L  
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK- 325

Query: 360 ATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLS--GSVPSSF-NLSSLRRLYMH 416
             SL  L  ++N           +L  L+FLD+S N LS  G    S    +SL+ L + 
Sbjct: 326 --SLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 417 MNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI-NEFSYLGILLLRGNQLKGNIPNQ 475
            N     +         L  LD + +         +      L  L +     +      
Sbjct: 382 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 476 LCHLSLLNILDLSYNKFNGPIP 497
              LS L +L ++ N F     
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  180 bits (460), Expect = 9e-49
 Identities = 73/414 (17%), Positives = 141/414 (34%), Gaps = 42/414 (10%)

Query: 63  FVNTGICELKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQ------SV 115
           F+  G  +  +L +L L  N    ++   C+  L  ++V  L   +            S 
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 116 IANIKSLEYLSLDDNNFEGSFS--FNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQL 172
           +  + +L          +       +     + +  F L   ++ +++   +     +  
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY----NFGW 306

Query: 173 KALNLRNCSLHALPSFLLHQLD--------------------LRFIDLSHNKLQGT-FPS 211
           + L L NC     P+  L  L                     L F+DLS N L      S
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 212 WLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSL 271
                 T L  L L  N +            L  +D  H+        ++   L  L+ L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 272 NLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE- 330
           ++S     V      + +  LE L ++ N+F         +   +L+FL LS   L+   
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 331 -VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNL-SGLQ 388
              F + ++L  L +++N+F            SL  LD S N +         +  S L 
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 546

Query: 389 FLDISENQLSGSVPSSF---NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDL 439
           FL++++N  + +         +   R+L + +     + P    +   +  L++
Sbjct: 547 FLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK-QGMPVLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  180 bits (458), Expect = 2e-48
 Identities = 82/461 (17%), Positives = 152/461 (32%), Gaps = 52/461 (11%)

Query: 222 TLYLLNNSLSGNFQLPSS-KHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEV 280
           T   +  +     ++P +       +D+S N        +     PEL  L+LS    + 
Sbjct: 11  TYQCMELNFY---KIPDNLPFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQT 66

Query: 281 RIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTN 338
               +   +  L +L L+ N     L     SG  SL  L   + +L         +   
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 339 LCWLYLNNNHF-SGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQF----LDIS 393
           L  L + +N   S K+ +  S  T+L  LDLS+N +          L  +      LD+S
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 394 ENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIP-GALRRSSSLTVLDLRDNQFSGSIPIWI 452
            N ++   P +F    L +L +  N  + ++    ++  + L V  L   +F     +  
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 453 NEFSYLGIL---------LLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANV 503
            + S L  L         L   +    +I +    L+ ++   L            + N 
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NF 304

Query: 504 TLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYES 563
               L                            +  +     K    + + F + K   +
Sbjct: 305 GWQHL-----------------------ELVNCKFGQF-PTLKLKSLKRLTFTSNKGGNA 340

Query: 564 YKGDILNYMTGLDFSCNELT--GDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIE 621
           +    L  +  LD S N L+  G         + ++ L+LS N +   +  +   L+ +E
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLE 399

Query: 622 SLDLSHNDLSGQIPPQ-LTELNFLSNFNVSYNHLSGPTPNA 661
            LD  H++L           L  L   ++S+ H        
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  155 bits (395), Expect = 4e-40
 Identities = 81/438 (18%), Positives = 142/438 (32%), Gaps = 65/438 (14%)

Query: 244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFS 303
           +        F  ++P N   +     +L+LS N        S      L+ LDLS     
Sbjct: 10  ITYQCMELNFY-KIPDN---LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 304 GELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKAT 361
             +          LS L L+ N +Q      F   ++L  L     + +      +    
Sbjct: 66  T-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 362 SLLELDLSNNML-YGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLR----RLYM 415
           +L EL++++N++   ++P +F NL+ L+ LD+S N++     +    L  +      L +
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 416 HMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP-IWINEFSYLGILLLRGNQLKGNI-- 472
            +N  N   PGA +    L  L LR+N  S ++    I   + L +  L   + +     
Sbjct: 185 SLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 473 -PNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAY 531
                  L  L  L +   +                         L      I   F   
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAY----------------------LDYYLDDIIDLFNCL 281

Query: 532 YN-STLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEI 590
            N S+  L  V         +   +    ++             L+    +       ++
Sbjct: 282 TNVSSFSLVSVTI----ERVKDFSYNFGWQH-------------LELVNCKFGQFPTLKL 324

Query: 591 GSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS--GQIPPQLTELNFLSNFN 648
            SL       L+     G    S  +L  +E LDLS N LS  G           L   +
Sbjct: 325 KSL-----KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379

Query: 649 VSYNHLSGPTPNAGQFAN 666
           +S+N +   + N      
Sbjct: 380 LSFNGVITMSSNFLGLEQ 397

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  107 bits (269), Expect = 2e-24
 Identities = 47/335 (14%), Positives = 89/335 (26%), Gaps = 28/335 (8%)

Query: 364 LELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNG 422
           +         Y +IP         + LD+S N L      SF +   L+ L +       
Sbjct: 10  ITYQCMELNFY-KIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 423 SIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLL 482
              GA +  S L+ L L  N          +  S L  L+     L       + HL  L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 483 NILDLSYNKFNG-PIPVCFANVT-LWTL--------GQAAGSFVLWETTQRISTEFEAYY 532
             L++++N      +P  F+N+T L  L                +      ++   +   
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 533 N-------STLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGD 585
           N          +   +      +    +  M          ++   + G   +   L   
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 586 IPSEIGSLSEIRALNLSHNFLSGS---IPQSLSNLKMIESLDLSHNDLSGQIPPQLTELN 642
             S +  L  +        +L      I    + L  + S  L    +        +   
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNF 304

Query: 643 FLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSG 677
              +  +                +     +  N G
Sbjct: 305 GWQHLELVNCKFGQFPTLK--LKSLKRLTFTSNKG 337

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.5 bits (181), Expect = 1e-13
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
           L  +T LD S  +L    P+   SLS ++ LN+SHN            L  ++ LD S N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 629 DLSGQIPPQLTEL-NFLSNFNVSYNHLSG 656
            +      +L    + L+  N++ N  + 
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.4 bits (173), Expect = 1e-12
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 575 LDFSCNELTGDIPSEI-GSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQ 633
           L  + N    +   +I   L  +  L+LS   L    P + ++L  ++ L++SHN+    
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 634 IPPQLTELNFLSNFNVSYNHLSGPTPNA 661
                  LN L   + S NH+       
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNL-KMIESLDLSH 627
           L+ +  L+ S N            L+ ++ L+ S N +  S  Q L +    +  L+L+ 
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 628 NDLSGQIPPQ--LTELNFLSNFNVSYNHLSGPTPNA 661
           ND +     Q  L  +       V    +   TP+ 
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  230 bits (589), Expect = 3e-66
 Identities = 73/588 (12%), Positives = 165/588 (28%), Gaps = 107/588 (18%)

Query: 92  LSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFK 151
           L++   +  L L     +G +   I  +  LE L+L  +  + +      K  S     +
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 152 LSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPS 211
                                  ++ +   +   P       DL    ++ +  Q +   
Sbjct: 137 QKQ-----------------KMRMHYQKTFVDYDP--REDFSDLIKDCINSDPQQKSIKK 177

Query: 212 WLLQNNTKLDTLYLLNNSLSGN----FQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPE 267
              +   K   +  L+N+++       +L      L +  + ++ F  +           
Sbjct: 178 -SSRITLKDTQIGQLSNNITFVSKAVMRLTK----LRQFYMGNSPFVAENI------CEA 226

Query: 268 LLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHL 327
             + N                +K L  +++ +     +LP  FL     +  ++++ N  
Sbjct: 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRG 285

Query: 328 QGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML-YGQIPHWFGNLSG 386
                                   +          +  + +  N L    +      +  
Sbjct: 286 IS--------------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331

Query: 387 LQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSG 446
           L  L+   NQL G +P+  +   L  L +  N            +  +  L    N+   
Sbjct: 332 LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK- 390

Query: 447 SIPIW--INEFSYLGILLLRGNQLKG-------NIPNQLCHLSLLNILDLSYNKFNGPIP 497
            IP        S +  +    N++          +         ++ ++LS N+ +    
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

Query: 498 VCFANVT-LWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFM 556
             F+  + L ++                        N    L+E+            +  
Sbjct: 451 ELFSTGSPLSSI--------------------NLMGNM---LTEIPKNSLKDENENFKNT 487

Query: 557 TKKRYESYKGDILNYMTGLDFSCNELTGDIPSEI--GSLSEIRALNLSHNFLSGSIPQSL 614
                          +T +D   N+LT  +  +    +L  +  ++LS+N  S   P   
Sbjct: 488 YL-------------LTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQP 532

Query: 615 SNLKMIESL------DLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSG 656
            N   ++        D   N    + P  +T    L+   +  N +  
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  216 bits (552), Expect = 4e-61
 Identities = 72/465 (15%), Positives = 158/465 (33%), Gaps = 41/465 (8%)

Query: 70  ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGN----LQSVIANIKSLEYL 125
              ++  L L      G +   +  LT ++VL L S+    N        I+   S E  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 126 SLDDNNFEGSF-SFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHA 184
                +++ +F  ++  ++ S L    +++   +   ++   +   +   +   + ++  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL-KDTQIGQLSNNITF 197

Query: 185 LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 244
           +   ++    LR   + ++             N   +              L      L 
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAW-ENENSEYAQQYKTEDLKWDNLKD----LT 252

Query: 245 RIDISHNKFSGQLPGNMGKILPELLSLNLSENGF--------EVRIPSSMSEMKRLESLD 296
            +++ +     +LP  +   LPE+  +N++ N          + +  +     ++++ + 
Sbjct: 253 DVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 297 LSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQD 355
           +  NN         L     L  L    N L+G++  F +   L  L L  N  +    +
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN 371

Query: 356 GLSKATSLLELDLSNNMLYGQIPHWF--GNLSGLQFLDISENQLSGSVPSSF-------- 405
                  +  L  ++N L   IP+ F   ++S +  +D S N++      +F        
Sbjct: 372 FCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 406 NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSG-------SIPIWINEFSYL 458
              ++  + +  N  +          S L+ ++L  N  +                   L
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 459 GILLLRGNQLKGNIPN-QLCHLSLLNILDLSYNKFNGPIPVCFAN 502
             + LR N+L     + +   L  L  +DLSYN F+   P    N
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  207 bits (529), Expect = 7e-58
 Identities = 76/470 (16%), Positives = 161/470 (34%), Gaps = 48/470 (10%)

Query: 56  SGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSV 115
           +  P    +        K  ++    NN+   +S  +  LT ++   + ++         
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICE 225

Query: 116 IANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKAL 175
               ++ EY             +++LK+ + ++V   +   +         LP  +++ +
Sbjct: 226 AWENENSEYAQQYKTE---DLKWDNLKDLTDVEV--YNCPNLTKLPTFLKALP--EMQLI 278

Query: 176 NLRNCSLHALPSF---------LLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLL 226
           N+      +                   ++ I + +N L+       LQ   KL  L  L
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

Query: 227 NNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPS-- 284
            N L G      S+  L  +++++N+ +  +P N      ++ +L+ + N  +  IP+  
Sbjct: 339 YNQLEGKLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLK-YIPNIF 396

Query: 285 SMSEMKRLESLDLSSNNFSGELPRQF------LSGCFSLSFLSLSDNHLQGEV--VFPNS 336
               +  + ++D S N       + F           ++S ++LS+N +      +F   
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 337 TNLCWLYLNNNHFSG-------KIQDGLSKATSLLELDLSNNMLYGQIP--HWFGNLSGL 387
           + L  + L  N  +           +       L  +DL  N L  ++        L  L
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYL 515

Query: 388 QFLDISENQLSGSVPSSFNLSSLRRLYMHM------NAFNGSIPGALRRSSSLTVLDLRD 441
             +D+S N  S       N S+L+   +        N      P  +    SLT L +  
Sbjct: 516 VGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

Query: 442 NQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491
           N     +   I     + +L ++ N       + +C      +  L Y+K
Sbjct: 576 NDIR-KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  202 bits (516), Expect = 4e-56
 Identities = 71/479 (14%), Positives = 143/479 (29%), Gaps = 59/479 (12%)

Query: 68  ICELKKLVELDLSKNNLYG----HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA--NIKS 121
           I +L +L  L L  +             +S     +                    +   
Sbjct: 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160

Query: 122 LEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCS 181
           L    ++ +  + S   +S       Q+ +LSN++  +  +    L   +L+   + N  
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS-KAVMRLT--KLRQFYMGNSP 217

Query: 182 LHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF-----QL 236
             A       +      +  + +   T       N   L  + + N             L
Sbjct: 218 FVAENICEAWEN----ENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272

Query: 237 PSSKHDLLRIDISHNKFSG--QLPGNMGKI-----LPELLSLNLSENGF-EVRIPSSMSE 288
           P     +  I+++ N+     QL  +   +       ++  + +  N      + +S+ +
Sbjct: 273 PE----MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 289 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNN 346
           MK+L  L+   N   G+LP         L+ L+L+ N +          +  +  L   +
Sbjct: 329 MKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386

Query: 347 NHFSG-KIQDGLSKATSLLELDLSNNMLYG-------QIPHWFGNLSGLQFLDISENQLS 398
           N              + +  +D S N +          +         +  +++S NQ+S
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 399 GSVPSSF-NLSSLRRLYMHMNAFNG-------SIPGALRRSSSLTVLDLRDNQFSGSIP- 449
                 F   S L  + +  N                 + +  LT +DLR N+ +     
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

Query: 450 IWINEFSYLGILLLRGNQLKGNIPNQLCHLS------LLNILDLSYNKFNGPIPVCFAN 502
                  YL  + L  N      P Q  + S      + N  D   N+     P     
Sbjct: 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  202 bits (515), Expect = 5e-56
 Identities = 77/465 (16%), Positives = 161/465 (34%), Gaps = 52/465 (11%)

Query: 69  CELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 128
            +   L++  ++ +     +            +   SN +T  +   +  +  L    + 
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG 214

Query: 129 DNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCS-LHALPS 187
           ++ F           +   +  +   +       ++  L    L  + + NC  L  LP+
Sbjct: 215 NSPFVAENIC-EAWENENSEYAQQYKTE----DLKWDNLK--DLTDVEVYNCPNLTKLPT 267

Query: 188 FLLHQLDLRFIDLSHNKLQGTFPSWL-------LQNNTKLDTLYLLNNSLSGNFQLPSSK 240
           FL    +++ I+++ N+                     K+  +Y+  N+L   F + +S 
Sbjct: 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326

Query: 241 ---HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDL 297
                L  ++  +N+  G+LP   G    +L SLNL+ N       +     +++E+L  
Sbjct: 327 QKMKKLGMLECLYNQLEGKLPA-FGS-EIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 298 SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFP---------NSTNLCWLYLNNNH 348
           + N                +S +  S N +                   N+  + L+NN 
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444

Query: 349 FSGKIQDGLSKATSLLELDLSNNML-------YGQIPHWFGNLSGLQFLDISENQLSGSV 401
            S   ++  S  + L  ++L  NML              F N   L  +D+  N+L+  +
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KL 503

Query: 402 PSSF---NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRD------NQFSGSIPIWI 452
              F    L  L  + +  N+F+   P     SS+L    +R+      N+     P  I
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562

Query: 453 NEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIP 497
                L  L +  N ++  +  ++     +++LD+  N       
Sbjct: 563 TLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  196 bits (500), Expect = 5e-54
 Identities = 72/477 (15%), Positives = 146/477 (30%), Gaps = 55/477 (11%)

Query: 58  VPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLS--NLTHIKVLDLSSNQLTGNLQSV 115
           V   +F   GI       +    + +            + + +    ++S+    +++  
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178

Query: 116 IANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKA 174
                    +    NN        ++   +KL+ F +  +  V     E         + 
Sbjct: 179 SRITLKDTQIGQLSNNITFVSK--AVMRLTKLRQFYMGNSPFVAENICEA-------WEN 229

Query: 175 LNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGN 233
            N      +         L DL  +++ +       P++ L+   ++  + +  N     
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISG 288

Query: 234 FQLPSSKHDLL---------RIDISHNKF-SGQLPGNMGKILPELLSLNLSENGFEVRIP 283
            QL      L           I I +N   +  +  ++ K + +L  L    N  E    
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEG-KL 346

Query: 284 SSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG---EVVFPNSTNLC 340
            +     +L SL+L+ N  +  +P  F      +  LS + N L+         + + + 
Sbjct: 347 PAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405

Query: 341 WLYLNNNHFSG-------KIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDIS 393
            +  + N            +     K  ++  ++LSNN +       F   S L  +++ 
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465

Query: 394 ENQLSG-------SVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRS--SSLTVLDLRDNQ 443
            N L+            +F N   L  + +  N     +    R +    L  +DL  N 
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS 524

Query: 444 FSGSIPIWINEFSYL------GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG 494
           FS   P      S L           +GN+     P  +     L  L +  N    
Sbjct: 525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  189 bits (482), Expect = 2e-51
 Identities = 73/438 (16%), Positives = 157/438 (35%), Gaps = 53/438 (12%)

Query: 68  ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 127
           +  L KL +  +  +                   +    Q          N+K L  + +
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 128 DDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIET--EEFPGLPE----YQLKALNLRNC 180
            +           LK   ++Q+  ++ N  +  E   +++  L +     +++ + +   
Sbjct: 257 YNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 181 SLHAL--PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPS 238
           +L      + L     L  ++  +N+L+G  P+    +  KL +L L  N ++    +P+
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKLASLNLAYNQITE---IPA 370

Query: 239 SK----HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFE-------VRIPSSMS 287
           +       +  +  +HNK          K +  + +++ S N            +  +  
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 288 EMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG---------EVVFPNSTN 338
           +   + S++LS+N  S   P++  S    LS ++L  N L              F N+  
Sbjct: 431 KGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 339 LCWLYLNNNHFSGKIQD-GLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISE--- 394
           L  + L  N  +    D   +    L+ +DLS N    + P    N S L+   I     
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRD 548

Query: 395 ---NQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPI 450
              N+     P       SL +L +  N     +   +  + +++VLD++DN        
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLS 605

Query: 451 WINEFSYLGILLLRGNQL 468
           ++  +   G+ +L  ++ 
Sbjct: 606 YVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  159 bits (404), Expect = 3e-41
 Identities = 54/403 (13%), Positives = 120/403 (29%), Gaps = 53/403 (13%)

Query: 270 SLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG 329
           + N   + +  +   S++   R+  L L     SG +P         L  L+L  +  + 
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKV 119

Query: 330 EVV------FPNSTNLCWLYLNNNHFSGKIQDGLSKA--TSLLELDLSNNMLYGQIPHWF 381
                       + +         H+     D   +   + L++  ++++     I    
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 382 GNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLR 440
                   +    N ++  V  +   L+ LR+ YM  + F            +    +  
Sbjct: 180 RITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENI-----CEAWENENSE 233

Query: 441 DNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCF 500
             Q   +  +  +    L  + +        +P  L  L  + +++++ N+      +  
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293

Query: 501 ANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKR 560
               L                          YN+           K              
Sbjct: 294 DWQALADAPVG-----------EKIQIIYIGYNNLKTFPVETSLQK-------------- 328

Query: 561 YESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMI 620
                   +  +  L+   N+L G      GS  ++ +LNL++N ++          + +
Sbjct: 329 --------MKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQV 379

Query: 621 ESLDLSHNDLSGQIPP--QLTELNFLSNFNVSYNHLSGPTPNA 661
           E+L  +HN L   IP       ++ +S  + SYN +       
Sbjct: 380 ENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  142 bits (359), Expect = 2e-35
 Identities = 42/319 (13%), Positives = 93/319 (29%), Gaps = 32/319 (10%)

Query: 205 LQGTFPSWLLQNNTKLDTLYLLNNSLSGN-----FQLPSSKHDLLRIDISHNKFSGQLPG 259
           + G  P   L +N ++  L L     SG       QL      L  + +  +        
Sbjct: 68  MWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTE----LEVLALGSHGEKVNERL 123

Query: 260 NMGKILPELLSL---NLSENGFEVRIPSSMS--EMKRLESLDLSSNNFSGELPRQFLSGC 314
              K +   +S          ++          +   L    ++S+     + +      
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI-T 182

Query: 315 FSLSFLSLSDNHLQG-EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML 373
              + +    N++          T L   Y+ N+ F  +         +    +      
Sbjct: 183 LKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENI-----CEAWENENSEYAQQ 237

Query: 374 YGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAF--------NGSI 424
           Y      + NL  L  +++        +P+    L  ++ + +  N          +   
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297

Query: 425 PGALRRSSSLTVLDLRDNQF-SGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLN 483
                    + ++ +  N   +  +   + +   LG+L    NQL+G +P        L 
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLA 356

Query: 484 ILDLSYNKFNGPIPVCFAN 502
            L+L+YN+           
Sbjct: 357 SLNLAYNQITEIPANFCGF 375

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.0 bits (229), Expect = 2e-19
 Identities = 40/285 (14%), Positives = 70/285 (24%), Gaps = 87/285 (30%)

Query: 56  SGVPLTVFVN--TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG--- 110
             V    F        +   +  ++LS N +        S  + +  ++L  N LT    
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474

Query: 111 ----NLQSVIANIKSLEYLSLDDNNFEG---SFSFNSLKNHSKLQVFKLSNSLVKIETEE 163
               +      N   L  + L  N        F   +L                      
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY-------------------- 514

Query: 164 FPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTL 223
                                          L  IDLS+N     FP+  L N++ L   
Sbjct: 515 -------------------------------LVGIDLSYNSFSK-FPTQPL-NSSTLKGF 541

Query: 224 YLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIP 283
            + N                   D   N+   + P  +    P L  L +  N    ++ 
Sbjct: 542 GIRNQ-----------------RDAQGNRTLREWPEGITL-CPSLTQLQIGSNDIR-KVN 582

Query: 284 SSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 328
             +     +  LD+  N     +   ++          L  +  Q
Sbjct: 583 EKI--TPNISVLDIKDNPNIS-IDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.6 bits (220), Expect = 2e-18
 Identities = 28/276 (10%), Positives = 67/276 (24%), Gaps = 54/276 (19%)

Query: 406 NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSG----SIPIWINEFSYLGIL 461
           +   +  L +     +G +P A+ + + L VL L  +          P  I+        
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 462 LLRGNQLKGNIPNQLCHLSLLNI--LDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWE 519
                  +    +        ++    ++ +     I                       
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK-------------- 184

Query: 520 TTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSC 579
                 T+     N+   +S+            +  +TK             +       
Sbjct: 185 -----DTQIGQLSNNITFVSK-----------AVMRLTK-------------LRQFYMGN 215

Query: 580 NELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLT 639
           +    +   E          N  +     +      NLK +  +++ +     ++P  L 
Sbjct: 216 SPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270

Query: 640 ELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGN 675
            L  +   NV+ N           +    +   G  
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.3 bits (170), Expect = 2e-12
 Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSH------NFLSGSIPQSLSNLKMIES 622
           L Y+ G+D S N  +   P++  + S ++   + +      N      P+ ++    +  
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 623 LDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA 661
           L +  ND+   +  ++     +S  ++  N       + 
Sbjct: 571 LQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 10/104 (9%)

Query: 569 LNYMTGLDFSCNELTGDIPS--EIGSLSEIRALNLSHNFLSG-------SIPQSLSNLKM 619
              +  L F+ N+L   IP+  +  S+S + A++ S+N +          +  +      
Sbjct: 376 TEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434

Query: 620 IESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQ 663
           + S++LS+N +S       +  + LS+ N+  N L+    N+ +
Sbjct: 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 3e-10
 Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 15/107 (14%)

Query: 569 LNYMTGLDFSCNELTG-------DIPSEIGSLSEIRALNLSHNFLSGSIPQ-SLSNLKMI 620
            + ++ ++   N LT        D      +   + +++L  N L+        + L  +
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515

Query: 621 ESLDLSHNDLSGQIPP------QLTELNFLSNFNVSYNHLSGPTPNA 661
             +DLS+N  S   P        L      +  +   N      P  
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 6e-10
 Identities = 11/87 (12%), Positives = 22/87 (25%), Gaps = 3/87 (3%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
                  D   N    + P  I     +  L +  N +     +   N+     LD+  N
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDN 597

Query: 629 DLSGQIPPQLTELNFLSNFNVSYNHLS 655
                    +        + + Y+   
Sbjct: 598 PNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 4/94 (4%)

Query: 578 SCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQ---- 633
             +         + S   +  L+L     SG +P ++  L  +E L L  +         
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 634 IPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANF 667
            P  ++             H      +     +F
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  223 bits (569), Expect = 4e-62
 Identities = 84/596 (14%), Positives = 180/596 (30%), Gaps = 82/596 (13%)

Query: 68  ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 127
           +    ++  L L+     G +   +  LT +KVL   ++  T + +       + +    
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 128 DDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKI--ETEEFPGLPEYQLKALNLRNCS--LH 183
             +     +    L    +L +  L    +    E +         LK   + N +  + 
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 184 ALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 243
            +   +     L+ I  +++         +   +   D      N       L      L
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTY-DNIAVDWEDANSDYAKQYENEELSWSNLKD----L 493

Query: 244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFE---------VRIPSSMSEMKRLES 294
             +++ +     QLP  +   LPEL SLN++ N             R+        +++ 
Sbjct: 494 TDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 295 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQ 354
             +  NN         L     L  L    N ++    F  +  L  L L+ N      +
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPE 612

Query: 355 DGLSKATSLLELDLSNNMLYGQIPHWF--GNLSGLQFLDISENQLSG------SVPSSFN 406
           D  +    +  L  S+N L   IP+ F   ++  +  +D S N++             + 
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 407 LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFS-------GSIPIWINEFSYLG 459
             +   + +  N             S ++ + L +N  +                   L 
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 460 ILLLRGNQLKGNIPNQL--CHLSLLNILDLSYNKFNGPIPVCFANVT-LWTLGQAAGSFV 516
            + LR N+L   + +      L  L+ +D+SYN F+   P    N + L   G       
Sbjct: 732 TIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGI---RHQ 786

Query: 517 LWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLD 576
                 RI  ++         ++                                +  L 
Sbjct: 787 RDAEGNRILRQWPT------GITT----------------------------CPSLIQLQ 812

Query: 577 FSCNELTGDIPSEIGSLSEIRALNLSHN-FLSGSIPQSLSNLKMIESLDLSHNDLS 631
              N++   +  ++    ++  L+++ N  +S  +      ++      L ++   
Sbjct: 813 IGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEA-GMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  197 bits (501), Expect = 4e-53
 Identities = 79/589 (13%), Positives = 167/589 (28%), Gaps = 85/589 (14%)

Query: 89  SPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQ 148
           +    N    K LD+  +Q   +L     N   +  LSL     +G    +++   ++L+
Sbjct: 296 TIHSLNWNFNKELDMWGDQPGVDLD----NNGRVTGLSLAGFGAKGRVP-DAIGQLTELK 350

Query: 149 VFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQG 207
           V     +S                +         +H    FL +   L   DL  + +  
Sbjct: 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410

Query: 208 TFPSWLLQNNTKLDTLYLLNNSLSGNFQ-LPSSKHDLLR---IDISHNKFSGQLPGNMGK 263
                 ++ ++++        +L+     +  +   L +   I  +++ F+         
Sbjct: 411 NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV--- 467

Query: 264 ILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 323
              +    N            S S +K L  ++L +     +LP         L  L+++
Sbjct: 468 ---DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIA 523

Query: 324 DNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG-QIPHWFG 382
            N                          ++ D       +    +  N L          
Sbjct: 524 CNRGISAAQLKADWT-------------RLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 383 NLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDN 442
            +  L  LD   N++   + +      L  L +  N            +  +  L    N
Sbjct: 571 KMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN 629

Query: 443 QFSGSIP--IWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLN-----ILDLSYNKFNGP 495
           +    IP          +G +    N++     N  C +          + LSYN+    
Sbjct: 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 496 IPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEF 555
               FA  +   +                 +      N    ++ +            + 
Sbjct: 689 PTELFATGS--PI-----------------STIILSNNL---MTSIPENSLKPKDGNYKN 726

Query: 556 MTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEI--GSLSEIRALNLSHNFLSGSIPQS 613
                           +T +D   N+LT  +  +    +L  +  +++S+N  S S P  
Sbjct: 727 TYL-------------LTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQ 771

Query: 614 LSNLKMIESLDLSH------NDLSGQIPPQLTELNFLSNFNVSYNHLSG 656
             N   +++  + H      N +  Q P  +T    L    +  N +  
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  174 bits (443), Expect = 2e-45
 Identities = 80/539 (14%), Positives = 158/539 (29%), Gaps = 72/539 (13%)

Query: 175 LNLRNCSLHALPS-FLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGN 233
            N         P   L +   +  + L+    +G  P   +   T+L  L    +S + +
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVS 362

Query: 234 FQLPSSKH-DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVR---IPSSMSEM 289
            +L   +       +   ++               L   +L ++         P      
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 290 KRLESLDLS-SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNH 348
             L+   +    N    + +        L  +  +++          + +      +   
Sbjct: 423 ISLKDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTY---DNIAVDWEDANSDYAK 478

Query: 349 FSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSG--------- 399
                +   S    L +++L N     Q+P +  +L  LQ L+I+ N+            
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 400 SVPSSF-NLSSLRRLYMHMNAFNG-SIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSY 457
            +         ++  YM  N         +L++   L +LD   N+    +         
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVK 596

Query: 458 LGILLLRGNQLKGNIPNQLC-HLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFV 516
           L  L L  NQ++  IP   C     +  L  S+NK    IP  F   +++ +        
Sbjct: 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVM-------- 646

Query: 517 LWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLD 576
                             +++ S  K          I    +    S         + + 
Sbjct: 647 -----------------GSVDFSYNK----------IGSEGRNISCSMDDYKGINASTVT 679

Query: 577 FSCNELTGDIPSEIGSLSEIRALNLSHNFLS-------GSIPQSLSNLKMIESLDLSHND 629
            S NE+         + S I  + LS+N ++            +  N  ++ ++DL  N 
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739

Query: 630 LSGQIPPQLTELNF--LSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKS 686
           L+  +           LSN +VSYN  S         +              G RI + 
Sbjct: 740 LTS-LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  155 bits (394), Expect = 2e-39
 Identities = 63/531 (11%), Positives = 148/531 (27%), Gaps = 91/531 (17%)

Query: 169 EYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQG--TFPSWLLQNNTKLDTLYLL 226
            YQ+ A    + S           +      +  NKL      P  L +    +     L
Sbjct: 215 TYQVVAYTTYSQSGIKRSELETQSVRGESFTVIDNKLTKDANVPIQLKETAEYIKDYKAL 274

Query: 227 ----------NNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSEN 276
                     N          +        +   + +  Q   ++      +  L+L+  
Sbjct: 275 KAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF 333

Query: 277 GFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VF 333
           G + R+P ++ ++  L+ L   +++ +    R F     +        + ++        
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETV-SGRLFGDEELTPDMSEERKHRIRMHYKKMFL 392

Query: 334 PNSTNLCWLYLNNNHFS-----GKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQ 388
                L    L  +  +       I+     +    ++    N +   I      L+ LQ
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI-TFISKAIQRLTKLQ 451

Query: 389 FLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSI 448
            +  + +  +    +     +             +   +      LT ++L +      +
Sbjct: 452 IIYFANSPFTYDNIAVDWEDANSDY----AKQYENEELSWSNLKDLTDVELYNCPNMTQL 507

Query: 449 PIWINEFSYLGILLLRGNQLKG---------NIPNQLCHLSLLNILDLSYNKFNG-PIPV 498
           P ++ +   L  L +  N+             + +       + I  + YN     P   
Sbjct: 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567

Query: 499 CFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTK 558
                 +  L                    +  +N    +  ++ F              
Sbjct: 568 SLQK--MVKL-----------------GLLDCVHNK---VRHLEAFGT------------ 593

Query: 559 KRYESYKGDILNYMTGLDFSCNELTGDIPSEIGS-LSEIRALNLSHNFLSGSIPQ--SLS 615
                        +T L    N++   IP +  +   ++  L  SHN L   IP   +  
Sbjct: 594 ----------NVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK 641

Query: 616 NLKMIESLDLSHNDLSGQIPPQLTELNF-----LSNFNVSYNHLSGPTPNA 661
           ++ ++ S+D S+N +  +       ++       S   +SYN +       
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.5 bits (222), Expect = 2e-18
 Identities = 41/318 (12%), Positives = 95/318 (29%), Gaps = 18/318 (5%)

Query: 359 KATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMN 418
           K T    + +        I  +    +  + LD    +      ++   S        ++
Sbjct: 250 KLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELD 309

Query: 419 AFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCH 478
            +       L  +  +T L L      G +P  I + + L +L    +    +       
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 479 LSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLEL 538
               ++ +   ++           + L    +   S +L +   R         +S + L
Sbjct: 370 ELTPDMSEERKHRIRMHYK----KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 539 SEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRA 598
            + +     +    I        ++ +   L  +  + F+ +  T D  +          
Sbjct: 426 KDTQIGNLTNRITFIS-------KAIQR--LTKLQIIYFANSPFTYDNIAVDWED----- 471

Query: 599 LNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPT 658
            N  +     +   S SNLK +  ++L +     Q+P  L +L  L + N++ N      
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 659 PNAGQFANFDEQNYGGNS 676
                +    +    G  
Sbjct: 532 QLKADWTRLADDEDTGPK 549

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 85.7 bits (212), Expect = 3e-17
 Identities = 33/283 (11%), Positives = 68/283 (24%), Gaps = 85/283 (30%)

Query: 56  SGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLT------ 109
                 +  +    +      + LS N +    +   +  + I  + LS+N +T      
Sbjct: 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716

Query: 110 -GNLQSVIANIKSLEYLSLDDNNFEG---SFSFNSLKNHSKLQVFKLSNSLVKIETEEFP 165
                    N   L  + L  N        F   +L                        
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY---------------------- 754

Query: 166 GLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYL 225
                 L  +++      + P+  L+   L+   + H +                     
Sbjct: 755 ------LSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR--------------------- 787

Query: 226 LNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSS 285
                                D   N+   Q P  +    P L+ L +  N    ++   
Sbjct: 788 ---------------------DAEGNRILRQWPTGITT-CPSLIQLQIGSNDIR-KVDEK 824

Query: 286 MSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 328
           +    +L  LD++ N     +    +          L  +  Q
Sbjct: 825 L--TPQLYILDIADNPNI-SIDVTSVCPYIEAGMYVLLYDKTQ 864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  216 bits (552), Expect = 3e-61
 Identities = 82/451 (18%), Positives = 141/451 (31%), Gaps = 25/451 (5%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
           L  L  L L+ N +        S LT ++ L     +L       I  + +L+ L++  N
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 131 NFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPE--YQLKALNLRNCSLHALPS 187
                       N + L    LS N +  I   +   L E      +L++    +  +  
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198

Query: 188 FLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR-- 245
                + L  + L  N          LQN   L    L+         L   +  ++   
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 246 -------IDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLS 298
                    +++              L  + +++L+    +      + +  + +SL + 
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHC-LANVSAMSLAGVSIK--YLEDVPKHFKWQSLSII 315

Query: 299 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLS 358
                 + P   L     L  L+L+ N            +L +L L+ N  S       S
Sbjct: 316 RCQLK-QFPTLDLP---FLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYS 371

Query: 359 --KATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF--NLSSLRRLY 414
                SL  LDLS N     +   F  L  LQ LD   + L      S   +L  L  L 
Sbjct: 372 DLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 415 MHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP-IWINEFSYLGILLLRGNQLKGNIP 473
           +          G     +SL  L +  N F  +         + L  L L   QL+    
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

Query: 474 NQLCHLSLLNILDLSYNKFNGPIPVCFANVT 504
                L  L +L++S+N         +  + 
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  191 bits (488), Expect = 2e-52
 Identities = 81/453 (17%), Positives = 139/453 (30%), Gaps = 29/453 (6%)

Query: 60  LTVFVNTGICELKKLVELDLSKNNLYG-HLSPCLSNLTHIKVLDLSSNQLTG----NLQS 114
           L    +  I +L  L +L+++ N ++   L    SNLT++  +DLS N +      +LQ 
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 115 VIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKA 174
           +  N +    L +  N  +      + +   KL    L  +       +        L  
Sbjct: 176 LRENPQVNLSLDMSLNPID-FIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233

Query: 175 LNLRNCSLHALPSF---------LLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYL 225
             L         +           L  + +    L++                 +  + L
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-KFHCLANVSAMSL 292

Query: 226 LNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSS 285
              S+     +P        + I   +       +    LP L SL L+ N     I   
Sbjct: 293 AGVSIKYLEDVPKH-FKWQSLSIIRCQLKQFPTLD----LPFLKSLTLTMNKGS--ISFK 345

Query: 286 MSEMKRLESLDLSSNNFSGELPRQF-LSGCFSLSFLSLSDNHLQG-EVVFPNSTNLCWLY 343
              +  L  LDLS N  S      +   G  SL  L LS N        F     L  L 
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405

Query: 344 LNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVP 402
             ++      +         LL LD+S           F  L+ L  L ++ N    +  
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

Query: 403 SSF--NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGI 460
           S+   N ++L  L +          G       L +L++  N          N+   L  
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525

Query: 461 LLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFN 493
           L    N+++ +          L   +L+ N   
Sbjct: 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  184 bits (469), Expect = 6e-50
 Identities = 98/587 (16%), Positives = 179/587 (30%), Gaps = 107/587 (18%)

Query: 86  GHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEGSFSFNSLKNH 144
           G L+PC+  + +I        +L+     V  +I  S + + L  N  +      S  N 
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS----KVPDDIPSSTKNIDLSFNPLK-ILKSYSFSNF 55

Query: 145 SKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLD-LRFIDLSH 202
           S+LQ   LS   +  IE + + GL    L  L L    + +        L  L  +    
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLH--HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113

Query: 203 NKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD---LLRIDISHNKFSGQLPG 259
            KL     S+ +     L  L + +N +    +LP+   +   L+ +D+S+N        
Sbjct: 114 TKLAS-LESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYNYIQTITVN 171

Query: 260 ---NMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFS 316
               + +     LSL++S N  +  I     +  +L  L L  N  S  + +  L     
Sbjct: 172 DLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG 230

Query: 317 LSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ 376
           L    L     +                N   F   I +GL    ++ E  L+    +  
Sbjct: 231 LHVHRLILGEFKD-------------ERNLEIFEPSIMEGLCD-VTIDEFRLTYTNDFSD 276

Query: 377 IPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTV 436
               F  L+ +  + ++   +   +         + L +            L     L  
Sbjct: 277 DIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFPTLDL---PFLKS 332

Query: 437 LDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPI 496
           L L  N+ S                          I  +   L  L+ LDLS N  +   
Sbjct: 333 LTLTMNKGS--------------------------ISFKKVALPSLSYLDLSRNALSFSG 366

Query: 497 PVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFM 556
              ++++   +L                    +  +N  + +S               FM
Sbjct: 367 CCSYSDLGTNSL-----------------RHLDLSFNGAIIMSA-------------NFM 396

Query: 557 TKKRYESYKGDILNYMTGLDFSCNELTGDIP-SEIGSLSEIRALNLSHNFLSGSIPQSLS 615
                       L  +  LDF  + L      S   SL ++  L++S+            
Sbjct: 397 G-----------LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 616 NLKMIESLDLSHNDLSGQIPPQ-LTELNFLSNFNVSYNHLSGPTPNA 661
            L  + +L ++ N                L+  ++S   L   +   
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  181 bits (462), Expect = 4e-49
 Identities = 90/450 (20%), Positives = 145/450 (32%), Gaps = 35/450 (7%)

Query: 75  VELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEG 134
           +        L   +   +   +  K +DLS N L        +N   L++L L     E 
Sbjct: 14  ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 135 SFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL 193
                +      L    L+ N +       F GL    L+ L      L +L SF + QL
Sbjct: 71  IED-KAWHGLHHLSNLILTGNPIQSFSPGSFSGLT--SLENLVAVETKLASLESFPIGQL 127

Query: 194 -DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSG----NFQ-LPSSKHDLLRID 247
             L+ ++++HN +          N T L  + L  N +      + Q L  +    L +D
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 248 ISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPS-SMSEMKRLESLDLSSNNFSGE- 305
           +S N     +     +   +L  L L  N     I    +  +  L    L    F  E 
Sbjct: 188 MSLNPID-FIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 306 ----LPRQFLSGCFSLSFLSLSDNHLQ----GEVVFPNSTNLCWLYLNNNHFSGKIQDGL 357
                    + G   ++       +        V F    N+  + L          + +
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDV 303

Query: 358 SKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHM 417
            K      L +    L  Q P    +L  L+ L ++ N+ S S      L SL  L +  
Sbjct: 304 PKHFKWQSLSIIRCQL-KQFP--TLDLPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSR 359

Query: 418 NAFNGSIPGALRR--SSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQ 475
           NA + S   +     ++SL  LDL  N     +         L  L  + + LK      
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 476 -LCHLSLLNILDLSYNKFNGPIPVCFANVT 504
               L  L  LD+SY          F  +T
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  130 bits (328), Expect = 1e-31
 Identities = 56/378 (14%), Positives = 103/378 (27%), Gaps = 53/378 (14%)

Query: 294 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSG 351
           +        S ++P    S   S   + LS N L+      F N + L WL L+      
Sbjct: 15  TYQCMDQKLS-KVPDDIPS---STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 352 KIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSL 410
                      L  L L+ N +    P  F  L+ L+ L   E +L+         L +L
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 411 RRLYMHMNAFNG-SIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILL----LRG 465
           ++L +  N  +   +P      ++L  +DL  N         +        +     +  
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 466 NQLKGNIPNQLCHLSLLNILDLSYNKFNGPIP-VCFANVTLWTLGQAAGSFVLWETTQRI 524
           N +          + L   L L  N  +  I   C  N+                     
Sbjct: 191 NPIDFIQDQAFQGIKLH-ELTLRGNFNSSNIMKTCLQNLA-------------------- 229

Query: 525 STEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTG 584
                        L   +             +        +G     +     +      
Sbjct: 230 -------GLHVHRLILGEFK-------DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275

Query: 585 DIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFL 644
           D   +   L+ + A++L+   +     + +      +SL +    L       L  L  L
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL 333

Query: 645 SNFNVSYNHLSGPTPNAG 662
               ++ N  S       
Sbjct: 334 ---TLTMNKGSISFKKVA 348

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 1e-09
 Identities = 20/81 (24%), Positives = 34/81 (41%)

Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQI 634
           LD S  +L         +L  ++ LN+SHN L        + L  + +LD S N +    
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 635 PPQLTELNFLSNFNVSYNHLS 655
                    L+ FN++ N ++
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 1/88 (1%)

Query: 575 LDFSCNELTGDIPSEI-GSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQ 633
           L  + N    +  S +  + + +  L+LS   L          L  ++ L++SHN+L   
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512

Query: 634 IPPQLTELNFLSNFNVSYNHLSGPTPNA 661
                 +L  LS  + S+N +       
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
           L++++ L  + N +    P     L+ +  L      L+      +  L  ++ L+++HN
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 629 DLSG-QIPPQLTELNFLSNFNVSYNHLSGPTPNAGQF 664
            +   ++P   + L  L + ++SYN++   T N  QF
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  192 bits (490), Expect = 1e-55
 Identities = 65/276 (23%), Positives = 111/276 (40%), Gaps = 12/276 (4%)

Query: 198 IDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD---LLRIDISH-NKF 253
            D  +    G           +++ L L   +L   + +PSS  +   L  + I   N  
Sbjct: 31  TDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 254 SGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSG 313
            G +P  + K L +L  L ++       IP  +S++K L +LD S N  SG LP   +S 
Sbjct: 90  VGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISS 147

Query: 314 CFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSN 370
             +L  ++   N + G +       S     + ++ N  +GKI    +   +L  +DLS 
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206

Query: 371 NMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRR 430
           NML G     FG+    Q + +++N L+  +       +L  L +  N   G++P  L +
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 431 SSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGN 466
              L  L++  N   G IP          +     N
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  181 bits (461), Expect = 1e-51
 Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 8/241 (3%)

Query: 270 SLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELP-RQFLSGCFSLSFLSLSD-NHL 327
           + +     +   +  + ++  R+ +LDLS  N     P    L+    L+FL +   N+L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 328 QGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLS 385
            G +       T L +LY+ + + SG I D LS+  +L+ LD S N L G +P    +L 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 386 GLQFLDISENQLSGSVPSSF-NLSSLRR-LYMHMNAFNGSIPGALRRSSSLTVLDLRDNQ 443
            L  +    N++SG++P S+ + S L   + +  N   G IP      + L  +DL  N 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208

Query: 444 FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANV 503
             G   +          + L  N L  ++  ++     LN LDL  N+  G +P     +
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 504 T 504
            
Sbjct: 268 K 268

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  173 bits (441), Expect = 9e-49
 Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 9/212 (4%)

Query: 293 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS----TNLCWLYL-NNN 347
            + D  +  + G L     +  + ++ L LS  +L      P+S      L +LY+   N
Sbjct: 29  PTTDCCNRTWLGVLCDT-DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87

Query: 348 HFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-N 406
           +  G I   ++K T L  L +++  + G IP +   +  L  LD S N LSG++P S  +
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147

Query: 407 LSSLRRLYMHMNAFNGSIPGALRRSSSL-TVLDLRDNQFSGSIPIWINEFSYLGILLLRG 465
           L +L  +    N  +G+IP +    S L T + +  N+ +G IP      + L  + L  
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206

Query: 466 NQLKGNIPNQLCHLSLLNILDLSYNKFNGPIP 497
           N L+G+             + L+ N     + 
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  167 bits (425), Expect = 2e-46
 Identities = 73/265 (27%), Positives = 120/265 (45%), Gaps = 17/265 (6%)

Query: 171 QLKALNLRNCSLH---ALPSFLLHQLDLRFIDLSH-NKLQGTFPSWLLQNNTKLDTLYLL 226
           ++  L+L   +L     +PS L +   L F+ +   N L G  P  +    T+L  LY+ 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYIT 109

Query: 227 NNSLSGNFQLPSS---KHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIP 283
           + ++SG   +P        L+ +D S+N  SG LP ++   LP L+ +    N     IP
Sbjct: 110 HTNVSG--AIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIP 166

Query: 284 SSMSEMKRL-ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLC 340
            S     +L  S+ +S N  +G++P  F     +L+F+ LS N L+G+   +F +  N  
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 341 WLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGS 400
            ++L  N  +  +   +  + +L  LDL NN +YG +P     L  L  L++S N L G 
Sbjct: 225 KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 401 VPSSFNLSSLRRLYMHMNAFNGSIP 425
           +P   NL          N      P
Sbjct: 284 IPQGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  145 bits (369), Expect = 7e-39
 Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 10/179 (5%)

Query: 335 NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ--IPHWFGNLSGLQFLDI 392
            +T+ C     N  + G + D  ++   +  LDLS   L     IP    NL  L FL I
Sbjct: 29  PTTDCC-----NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI 83

Query: 393 S-ENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPI 450
              N L G +P +   L+ L  LY+     +G+IP  L +  +L  LD   N  SG++P 
Sbjct: 84  GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143

Query: 451 WINEFSYLGILLLRGNQLKGNIPNQLCHL-SLLNILDLSYNKFNGPIPVCFANVTLWTL 508
            I+    L  +   GN++ G IP+       L   + +S N+  G IP  FAN+ L  +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  136 bits (345), Expect = 1e-35
 Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 572 MTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS 631
           +  +D S N L GD     GS    + ++L+ N L+  +   +   K +  LDL +N + 
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIY 257

Query: 632 GQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRINKSCT 688
           G +P  LT+L FL + NVS+N+L G  P  G    FD   Y  N  LCG  +  +CT
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL-PACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  132 bits (334), Expect = 3e-34
 Identities = 60/290 (20%), Positives = 96/290 (33%), Gaps = 82/290 (28%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
             I +L +L  L ++  N+ G +   LS +  +  LD S N L+G L   I+++ +L  +
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
           + D N   G+   +S  + SKL                                      
Sbjct: 155 TFDGNRISGAIP-DSYGSFSKL-------------------------------------- 175

Query: 186 PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 245
                       + +S N+L G  P                      N        +L  
Sbjct: 176 ---------FTSMTISRNRLTGKIPPTF------------------ANL-------NLAF 201

Query: 246 IDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGE 305
           +D+S N   G      G        ++L++N     +   +   K L  LDL +N   G 
Sbjct: 202 VDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGT 259

Query: 306 LPRQFLSGCFSLSFLSLSDNHLQGEV----VFPNSTNLCWLYLNNNHFSG 351
           LP Q L+    L  L++S N+L GE+               Y NN    G
Sbjct: 260 LP-QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA--YANNKCLCG 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =   99 bits (250), Expect = 4e-23
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 569 LNYMTGLDFS-CNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSH 627
           L Y+  L     N L G IP  I  L+++  L ++H  +SG+IP  LS +K + +LD S+
Sbjct: 75  LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134

Query: 628 NDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPN 660
           N LSG +PP ++ L  L       N +SG  P+
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 97.2 bits (243), Expect = 3e-22
 Identities = 41/203 (20%), Positives = 68/203 (33%), Gaps = 56/203 (27%)

Query: 466 NQLKGNIPNQLCHLSLLNILDLSYNKFNG--PIPVCFANVTLWTLGQAAGSFVLWETTQR 523
               G + +       +N LDLS        PIP   AN+                    
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP------------------- 76

Query: 524 ISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDI------LNYMTGLDF 577
                   Y + L +  + +                      G I      L  +  L  
Sbjct: 77  --------YLNFLYIGGINNLV--------------------GPIPPAIAKLTQLHYLYI 108

Query: 578 SCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQ 637
           +   ++G IP  +  +  +  L+ S+N LSG++P S+S+L  +  +    N +SG IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 638 LTELNFLSNF-NVSYNHLSGPTP 659
               + L     +S N L+G  P
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIP 191

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.3 bits (181), Expect = 3e-14
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 573 TGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGS--IPQSLSNLKMIESLDLSH-ND 629
              D       G +         +  L+LS   L     IP SL+NL  +  L +   N+
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 630 LSGQIPPQLTELNFLSNFNVSYNHLSGPTP 659
           L G IPP + +L  L    +++ ++SG  P
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.9 bits (146), Expect = 9e-10
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
              + GLD   N + G +P  +  L  + +LN+S N L G IPQ   NL+  +    ++N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301

Query: 629 D-LSGQIPP 636
             L G   P
Sbjct: 302 KCLCGSPLP 310

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  185 bits (471), Expect = 2e-50
 Identities = 88/439 (20%), Positives = 152/439 (34%), Gaps = 24/439 (5%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
           L  L  L L+ N +        S L+ ++ L      L       I ++K+L+ L++  N
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 131 NFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPE--YQLKALNLRNCSLHALPS 187
             +         N + L+   LS N +  I   +   L +      +L+L    ++ +  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 188 FLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPS--------- 238
               ++ L  + L +N          +Q    L+   L+         L           
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 239 SKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLS 298
               +    +++  +      ++   L  + S +L             S     + L+L 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELV 312

Query: 299 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNN--HFSGKIQDG 356
           +  F  + P   L    SL  L+ + N         +  +L +L L+ N   F G     
Sbjct: 313 NCKFG-QFPTLKLK---SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 357 LSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF--NLSSLRRLY 414
               TSL  LDLS N +   +   F  L  L+ LD   + L      S   +L +L  L 
Sbjct: 369 DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 415 MHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI-NEFSYLGILLLRGNQLKGNIP 473
           +       +  G     SSL VL +  N F  +    I  E   L  L L   QL+   P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 474 NQLCHLSLLNILDLSYNKF 492
                LS L +L+++ N+ 
Sbjct: 488 TAFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  161 bits (410), Expect = 2e-42
 Identities = 87/444 (19%), Positives = 148/444 (33%), Gaps = 42/444 (9%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLT-GNLQSVIANIKSLEYLSLDD 129
           L  L +L   + NL    +  + +L  +K L+++ N +    L    +N+ +LE+L L  
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 130 NNFEGSFSFNSLKNHSKLQVFKLS-----NSLVKIETEEFPGLPEYQLKALNLRNC--SL 182
           N  + S     L+   ++ +  LS     N +  I+   F  +   +L  L LRN   SL
Sbjct: 159 NKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI---RLHKLTLRNNFDSL 214

Query: 183 HALPSFL-----LHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYL----LNNSLSGN 233
           + + + +     L    L   +  +      F    L+    L         L+  L   
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 234 FQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSE----- 288
             L +   ++    +           +       L  +N     F      S+       
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334

Query: 289 -----------MKRLESLDLSSNNFSG-ELPRQFLSGCFSLSFLSLSDNHLQG-EVVFPN 335
                      +  LE LDLS N  S      Q   G  SL +L LS N +      F  
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

Query: 336 STNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISE 394
              L  L   +++     +        +L+ LD+S+          F  LS L+ L ++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 395 NQLSGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI 452
           N    +        L +L  L +         P A    SSL VL++  NQ         
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514

Query: 453 NEFSYLGILLLRGNQLKGNIPNQL 476
           +  + L  + L  N    + P   
Sbjct: 515 DRLTSLQKIWLHTNPWDCSCPRID 538

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  161 bits (409), Expect = 3e-42
 Identities = 91/447 (20%), Positives = 156/447 (34%), Gaps = 37/447 (8%)

Query: 74  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 133
              LDLS N L    S    +   ++VLDLS  ++         ++  L  L L  N  +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 134 GSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHAL--PSFLL 190
            S +  +    S LQ       +L  +E      L    LK LN+ +  + +   P +  
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK--TLKELNVAHNLIQSFKLPEYFS 146

Query: 191 HQLDLRFIDLSHNKLQGTFPSWLLQNNTKLD----TLYLLNNSLS----GNFQLPSSKHD 242
           +  +L  +DLS NK+Q +     L+   ++     +L L  N ++    G F+       
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR---- 201

Query: 243 LLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFE-----VRIPSSMSE---MKRLES 294
           L ++ + +N  S  +     + L  L    L    F       +   S  E      +E 
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 295 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQ 354
             L+  ++  +      +   ++S  SL    ++    F  +     L L N  F     
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 355 DGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLS--GSVPSSF-NLSSLR 411
             L    SL  L  ++N           +L  L+FLD+S N LS  G    S    +SL+
Sbjct: 322 LKL---KSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 412 RLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI-NEFSYLGILLLRGNQLKG 470
            L +  N    ++         L  LD + +         +      L  L +     + 
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 471 NIPNQLCHLSLLNILDLSYNKFNGPIP 497
                   LS L +L ++ N F     
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  158 bits (402), Expect = 3e-41
 Identities = 89/430 (20%), Positives = 156/430 (36%), Gaps = 33/430 (7%)

Query: 96  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-N 154
              K LDLS N L         +   L+ L L     + +    + ++ S L    L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 155 SLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLD-LRFIDLSHNKLQGTFPSWL 213
            +  +    F GL    L+ L     +L +L +F +  L  L+ ++++HN +Q       
Sbjct: 87  PIQSLALGAFSGLS--SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 214 LQNNTKLDTLYLLNNSLS----GNFQ-LPSSKHDLLRIDISHNKFSGQLPGNMGKILPEL 268
             N T L+ L L +N +      + + L       L +D+S N  +  +     K +  L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RL 202

Query: 269 LSLNLSENGFEVRIPSSM-SEMKRLESLDLSSNNFSG-----ELPRQFLSGCFSLSFLSL 322
             L L  N   + +  +    +  LE   L    F       +  +  L G  +L+    
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 323 SDNHLQGEV-----VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI 377
              +L   +     +F   TN+    L +     +++D  S       L+L N     Q 
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF-SYNFGWQHLELVNCKFG-QF 319

Query: 378 PHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFN--GSIPGALRRSSSLT 435
           P     L  L+ L  + N+   +  S  +L SL  L +  N  +  G    +   ++SL 
Sbjct: 320 P--TLKLKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 436 VLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIP-NQLCHLSLLNILDLSYNKFNG 494
            LDL  N    ++         L  L  + + LK     +    L  L  LD+S+     
Sbjct: 377 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 495 PIPVCFANVT 504
                F  ++
Sbjct: 436 AFNGIFNGLS 445

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (359), Expect = 8e-36
 Identities = 103/589 (17%), Positives = 181/589 (30%), Gaps = 118/589 (20%)

Query: 90  PCLSNLTHIKVLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEGSFSFNSLKNHSKLQ 148
           PC+  + +I            N   +  N+  S + L L  N         S  +  +LQ
Sbjct: 2   PCVEVVPNITY-QCMEL----NFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQ 55

Query: 149 VFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQ 206
           V  LS   +  IE   +  L    L  L L    + +L       L  L+ +      L 
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLS--HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 207 GTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR---IDISHNKFSGQLPGNMGK 263
            +  ++ + +   L  L + +N +  +F+LP    +L     +D+S NK    +     +
Sbjct: 114 -SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLR 170

Query: 264 ILPEL----LSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSF 319
           +L ++    LSL+LS N     I     +  RL  L L +N  S  + +  + G   L  
Sbjct: 171 VLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 320 LSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLS-NNMLYGQIP 378
             L          F N  NL     + +   G          ++ E  L+  +     I 
Sbjct: 230 HRLVLGE------FRNEGNL--EKFDKSALEG------LCNLTIEEFRLAYLDYYLDDII 275

Query: 379 HWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLD 438
             F  L+ +    +    +   V         + L +    F       L+   SL  L 
Sbjct: 276 DLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLK---SLKRLT 331

Query: 439 LRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPV 498
              N+   +                               L  L  LDLS N  +     
Sbjct: 332 FTSNKGGNAFS--------------------------EVDLPSLEFLDLSRNGLSFKGCC 365

Query: 499 CFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTK 558
             ++    +L                    +  +N  + +S                + +
Sbjct: 366 SQSDFGTTSL-----------------KYLDLSFNGVITMS-----------SNFLGLEQ 397

Query: 559 KRYESYKGDILNYMTGLDFSCNELTGDIPSEI--GSLSEIRALNLSHNFLSGSIPQSLSN 616
             +             LDF  + L   +       SL  +  L++SH     +     + 
Sbjct: 398 LEH-------------LDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 617 LKMIESLDLSHNDLSGQIPP----QLTELNFLSNFNVSYNHLSGPTPNA 661
           L  +E L ++ N       P    +L  L FL   ++S   L   +P A
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFL---DLSQCQLEQLSPTA 489

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  138 bits (349), Expect = 2e-34
 Identities = 87/420 (20%), Positives = 152/420 (36%), Gaps = 32/420 (7%)

Query: 269 LSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 328
           ++    E  F  +IP ++      ++LDLS N     L          L  L LS   +Q
Sbjct: 10  ITYQCMELNFY-KIPDNLPF--STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 329 G--EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSG 386
              +  + + ++L  L L  N          S  +SL +L      L        G+L  
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 387 LQFLDISENQL-SGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTV----LDLR 440
           L+ L+++ N + S  +P  F NL++L  L +  N         LR    + +    LDL 
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 441 DNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCH-LSLLNILDLSYNKF------- 492
            N  +  I     +   L  L LR N    N+       L+ L +  L   +F       
Sbjct: 186 LNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 493 ----NGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKAS 548
               +    +C   +  + L                 T   ++   ++ +  VK F    
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 549 GQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLS- 607
           G + +E +   ++  +    L  +  L F+ N+   +  SE+  L  +  L+LS N LS 
Sbjct: 305 GWQHLE-LVNCKFGQFPTLKLKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLSRNGLSF 361

Query: 608 -GSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFAN 666
            G   QS      ++ LDLS N +   +      L  L + +  +++L         F +
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFLS 419

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  124 bits (313), Expect = 7e-30
 Identities = 67/369 (18%), Positives = 121/369 (32%), Gaps = 57/369 (15%)

Query: 63  FVNTGICELKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDL------SSNQLTGNLQSV 115
           F+  G  +  +L +L L  N    ++   C+  L  ++V  L      +   L    +S 
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 116 IANIKSLEYLSLDDNNFEGSFS--FNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQL 172
           +  + +L          +       +     + +  F L   ++ +++         +  
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK----DFSYNFGW 306

Query: 173 KALNLRNCSLHALPSFLLHQLD--------------------LRFIDLSHNKLQG-TFPS 211
           + L L NC     P+  L  L                     L F+DLS N L      S
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 212 WLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSL 271
                 T L  L L  N +            L  +D  H+        ++   L  L+ L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 272 NLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV 331
           ++S     V      + +  LE L ++ N+F         +   +L+FL LS   L+   
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--- 483

Query: 332 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLD 391
                       L+   F+          +SL  L++++N L       F  L+ LQ + 
Sbjct: 484 -----------QLSPTAFNSL--------SSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524

Query: 392 ISENQLSGS 400
           +  N    S
Sbjct: 525 LHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 575 LDFSCNELTGDIPSEI-GSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQ 633
           L  + N    +   +I   L  +  L+LS   L    P + ++L  ++ L+++ N L   
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 634 IPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQN 671
                  L  L    +  N      P     + +  +N
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 547

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 5/106 (4%)

Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFL-SGSIPQSLSNLKMIESLDLSHNDLSGQ 633
           L      L       IG L  ++ LN++HN + S  +P+  SNL  +E LDLS N +   
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 634 IPPQLTELNFLSNF----NVSYNHLSGPTPNAGQFANFDEQNYGGN 675
               L  L+ +       ++S N ++   P A +     +     N
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  186 bits (474), Expect = 2e-49
 Identities = 118/713 (16%), Positives = 221/713 (30%), Gaps = 116/713 (16%)

Query: 77  LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSF 136
                 NL          L   + L LS N +     S    ++ L+ L L       + 
Sbjct: 9   AFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 137 SFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHAL---PSFLLHQ 192
              + +N   L++  L  + +  +  + F GL    L  L L  C L        +  + 
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF--HLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 193 LDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLS----GNFQLPSSKHDLLRIDI 248
             L  +DLS N+++  +          L ++   +N +        +    K  L    +
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT-LSFFSL 181

Query: 249 SHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPR 308
           + N    ++  + GK +    ++ L                     LD+S N ++ ++  
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEI-------------------LDVSGNGWTVDITG 222

Query: 309 QFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLS--KATSLLEL 366
            F +        SL   H           ++       ++     Q+  +    +S+  L
Sbjct: 223 NFSNAISKSQAFSLILAH-----------HIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271

Query: 367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIP 425
           DLS+  ++      F  L  L+ L+++ N+++     +F  L +L+ L +  N       
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331

Query: 426 GALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNIL 485
                   +  +DL+ N  +            L  L LR N L       +  +  +  +
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDI 386

Query: 486 DLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRIS--TEFEAYYNSTLELSEVKH 543
            LS NK      +      +        +  +     R+          N     S  + 
Sbjct: 387 FLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446

Query: 544 FYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEI-----GSLSEIRA 598
             +                         +  L    N L     +E+       LS ++ 
Sbjct: 447 PSE----------------------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 599 LNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS----GQIPPQLTELNFLSNFNVSYNHL 654
           L L+HN+L+   P   S+L  +  L L+ N L+      +P  L  L      ++S N L
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEIL------DISRNQL 538

Query: 655 SGPTPNAGQFANFDEQNYGGNSGLC-------------------GPRINKSCTTVLEPPE 695
               PN   F +    +   N  +C                   GP  +  C        
Sbjct: 539 L--APNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSG 596

Query: 696 TPS---DGAEEDESAVDMVAFYWSFVASSVTVILGLFAILWVNSYWRRLWFYF 745
                      DE  V     +  F+  +VT+ L L  IL V  +    +  +
Sbjct: 597 VSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  173 bits (439), Expect = 5e-45
 Identities = 99/488 (20%), Positives = 166/488 (34%), Gaps = 53/488 (10%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNL--QSVIANIKSLEYLSLD 128
           L  L  LDL  + +Y         L H+  L L    L+  +       N+K+L  L L 
Sbjct: 72  LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 129 DNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPS 187
            N     +   S    + L+    S N +  +   E   L    L   +L   SL++  S
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191

Query: 188 F-------LLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNN------------ 228
                       + L  +D+S N              +K     L+              
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251

Query: 229 --SLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSM 286
                 N     ++  +  +D+SH      L   + + L +L  LNL+ N        + 
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAF 310

Query: 287 SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTNLCWLYL 344
             +  L+ L+LS N    EL      G   ++++ L  NH+    +  F     L  L L
Sbjct: 311 YGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369

Query: 345 NNNHFSG---------------KIQDGLSKATSLLELDLSNNMLYG-QIPHWFGNLSGLQ 388
            +N  +                K+        +   + LS N L    I ++   +  LQ
Sbjct: 370 RDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQ 429

Query: 389 FLDISENQLSGSVPSSF--NLSSLRRLYMHMNAFNGSI-----PGALRRSSSLTVLDLRD 441
            L +++N+ S            SL +L++  N    +             S L VL L  
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489

Query: 442 NQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFA 501
           N  +   P   +  + L  L L  N+L     N L   + L ILD+S N+   P P  F 
Sbjct: 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFV 547

Query: 502 NVTLWTLG 509
           ++++  + 
Sbjct: 548 SLSVLDIT 555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  169 bits (431), Expect = 4e-44
 Identities = 78/453 (17%), Positives = 146/453 (32%), Gaps = 31/453 (6%)

Query: 71  LKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
           L++L  L+L        +      NL ++++LDL S+++          +  L  L L  
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 130 NNF-EGSFSFNSLKNHSKLQVFKLS-NSLVKIETE-EFPGLPEYQLKALNLRNCSLHALP 186
               +        +N   L    LS N +  +     F  L    LK+++  +  +  + 
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN--SLKSIDFSSNQIFLVC 164

Query: 187 SFL---LHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 243
                 L    L F  L+ N L         +       + L    +SGN         +
Sbjct: 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT------V 218

Query: 244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKR--LESLDLSSNN 301
                  N  S     ++  +   ++      +  +    ++ + + R  +  LDLS   
Sbjct: 219 DITGNFSNAISKSQAFSL-ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277

Query: 302 FSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGLSK 359
               L  +       L  L+L+ N +    +  F    NL  L L+ N            
Sbjct: 278 VF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 360 ATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNA 419
              +  +DL  N +       F  L  LQ LD+ +N L+    +   + S+  +++  N 
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT----TIHFIPSIPDIFLSGNK 392

Query: 420 FNGSIPGALRRSSSLTVLDLRDNQFSG-SIPIWINEFSYLGILLLRGNQLKGNIPNQLCH 478
                   L    +  ++ L +N+     I  ++    +L IL+L  N+      +Q   
Sbjct: 393 LVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 479 -LSLLNILDLSYNKFNGPIPVCFANVTLWTLGQ 510
               L  L L  N                 L  
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  133 bits (337), Expect = 2e-32
 Identities = 84/439 (19%), Positives = 153/439 (34%), Gaps = 84/439 (19%)

Query: 74  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 133
           +  LDLS   ++   S     L  +KVL+L+ N++          + +L+ L+L  N   
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-- 325

Query: 134 GSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL 193
                                 L ++ +  F GLP  ++  ++L+   +  +       L
Sbjct: 326 ----------------------LGELYSSNFYGLP--KVAYIDLQKNHIAIIQDQTFKFL 361

Query: 194 -DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNK 252
             L+ +DL  N L        +     +  ++L  N L     LP        I +S N+
Sbjct: 362 EKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLV---TLPKINLTANLIHLSENR 412

Query: 253 FSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLS 312
                                      + I   +  +  L+ L L+ N FS     Q  S
Sbjct: 413 LEN------------------------LDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 313 GCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNM 372
              SL  L L +N LQ        T LCW                   + L  L L++N 
Sbjct: 449 ENPSLEQLFLGENMLQ----LAWETELCWDVFEGL-------------SHLQVLYLNHNY 491

Query: 373 LYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSS 432
           L    P  F +L+ L+ L ++ N+L+  +  +   ++L  L +  N      P       
Sbjct: 492 LNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQLLAPNPDVF---V 547

Query: 433 SLTVLDLRDNQFSGSIPI-WINEFSYLGILLLRGN--QLKGNIPNQLCHLSLLNILDLSY 489
           SL+VLD+  N+F     +     +     + + G    +    P+    +SL ++     
Sbjct: 548 SLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC 607

Query: 490 NKFNGPIPVCFANVTLWTL 508
           ++      + F+   + T+
Sbjct: 608 DEEEVLKSLKFSLFIVCTV 626

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  124 bits (314), Expect = 1e-29
 Identities = 69/429 (16%), Positives = 128/429 (29%), Gaps = 71/429 (16%)

Query: 241 HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSN 300
            D           + Q+P      L     L LS N       SS   +++L+ L+L S 
Sbjct: 4   FDGRIAFYRFCNLT-QVPQV----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

Query: 301 NFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKI--QDG 356
                + ++      +L  L L  + +       F    +L  L L     S  +     
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 357 LSKATSLLELDLSNNMLYGQIPHW-FGNLSGLQFLDISENQLSGSVPSSFN---LSSLRR 412
                +L  LDLS N +     H  FG L+ L+ +D S NQ+              +L  
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 413 LYMHMNAFNGSIPGALRRSS------SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGN 466
             +  N+    +     +         L +LD+  N ++         FS         N
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT---VDITGNFS---------N 226

Query: 467 QLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRIST 526
            +  +    L     +      ++    P    FA +   ++                  
Sbjct: 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV-----------------R 269

Query: 527 EFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDI 586
             +  +     L+                        ++   L  +  L+ + N++    
Sbjct: 270 HLDLSHGFVFSLNS---------------------RVFET--LKDLKVLNLAYNKINKIA 306

Query: 587 PSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSN 646
                 L  ++ LNLS+N L      +   L  +  +DL  N ++         L  L  
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 647 FNVSYNHLS 655
            ++  N L+
Sbjct: 367 LDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  124 bits (313), Expect = 2e-29
 Identities = 85/520 (16%), Positives = 150/520 (28%), Gaps = 106/520 (20%)

Query: 170 YQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNS 229
           +  +    R C+L  +P  L        + LS N ++ T  +       +L  L      
Sbjct: 4   FDGRIAFYRFCNLTQVPQVLNT---TERLLLSFNYIR-TVTASSFPFLEQLQLL------ 53

Query: 230 LSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEM 289
                            ++        +     + LP L  L+L  +      P +   +
Sbjct: 54  -----------------ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96

Query: 290 KRLESLDLSSNNFSGE-LPRQFLSGCFSLSFLSLSDNHLQG---EVVFPNSTNLCWLYLN 345
             L  L L     S   L   +     +L+ L LS N ++       F    +L  +  +
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 346 NNHFSGKIQDGLS--KATSLLELDLSNNMLYGQIPHWFGNLSG------LQFLDISENQL 397
           +N      +  L   +  +L    L+ N LY ++   +G          L+ LD+S N  
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

Query: 398 SGSVPSSFN-------------LSSLRRLYMHMNAFNGSIPGALR--RSSSLTVLDLRDN 442
           +  +  +F+                +       +               SS+  LDL   
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG 276

Query: 443 QFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFAN 502
                          L +L L  N++          L  L +L+LSYN         F  
Sbjct: 277 FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336

Query: 503 VTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYE 562
             L  +                         + ++L +                      
Sbjct: 337 --LPKV-------------------------AYIDLQKNHIAIIQDQ------------- 356

Query: 563 SYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIES 622
           ++K   L  +  LD   N LT      I  +  I  + LS N L      +L+       
Sbjct: 357 TFKF--LEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTA----NL 405

Query: 623 LDLSHNDLSG-QIPPQLTELNFLSNFNVSYNHLSGPTPNA 661
           + LS N L    I   L  +  L    ++ N  S  + + 
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 92.2 bits (229), Expect = 2e-19
 Identities = 65/343 (18%), Positives = 100/343 (29%), Gaps = 68/343 (19%)

Query: 70  ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
            L K+  +DL KN++          L  ++ LDL  N LT      I  I S+  + L  
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSG 390

Query: 130 NNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALP--S 187
           N        N   N                               ++L    L  L    
Sbjct: 391 NKLVTLPKINLTANL------------------------------IHLSENRLENLDILY 420

Query: 188 FLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRID 247
           FLL    L+ + L+ N+            N  L+ L+L  N L                +
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ----------LAWETE 470

Query: 248 ISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELP 307
           +  + F G         L  L  L L+ N      P   S +  L  L L+SN  +  L 
Sbjct: 471 LCWDVFEG---------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLS 520

Query: 308 RQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELD 367
              L    +L  L +S N L          +L  L + +N F  + +        L    
Sbjct: 521 HNDLPA--NLEILDISRNQLL-APNPDVFVSLSVLDITHNKFICECE--------LSTFI 569

Query: 368 LSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSL 410
              N     I     ++  +     S   L        +   +
Sbjct: 570 NWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEV 612

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.9 bits (166), Expect = 7e-12
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 19/165 (11%)

Query: 68  ICELKKLVELDLSKNNLYGHLSPCL-SNLTHIKVLDLSSNQLTGNLQSVI-----ANIKS 121
           +  +  L  L L++N           S    ++ L L  N L    ++ +       +  
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481

Query: 122 LEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNC 180
           L+ L L+ N    S       + + L+   L+ N L  +   + P      L+ L++   
Sbjct: 482 LQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA----NLEILDISRN 536

Query: 181 SLHALPSFLLHQLDLRFIDLSHNKLQ-----GTFPSWLLQNNTKL 220
            L A    +     L  +D++HNK        TF +WL   N  +
Sbjct: 537 QLLAPNPDVFVS--LSVLDITHNKFICECELSTFINWLNHTNVTI 579

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 30/162 (18%), Positives = 46/162 (28%), Gaps = 19/162 (11%)

Query: 51  SCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLT- 109
                     T         L  L  L L+ N L        S+LT ++ L L+SN+LT 
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518

Query: 110 -------GNLQSVI-----------ANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFK 151
                   NL+ +                SL  L +  N F      ++  N        
Sbjct: 519 LSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVT 578

Query: 152 LSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL 193
           ++     I            L +L+   C    +   L   L
Sbjct: 579 IAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSL 620

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  167 bits (426), Expect = 3e-45
 Identities = 94/449 (20%), Positives = 178/449 (39%), Gaps = 35/449 (7%)

Query: 68  ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 127
             +L ++  L   +  +   +   +  L ++  ++ S+NQLT    + + N+  L  + +
Sbjct: 42  QTDLDQVTTLQADRLGI-KSIDG-VEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILM 97

Query: 128 DDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALP 186
           ++N         +L N   L    L  N +  I+      L    L  L L + ++  + 
Sbjct: 98  NNNQIADITPLANLTN---LTGLTLFNNQITDIDP--LKNLT--NLNRLELSSNTISDIS 150

Query: 187 SFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRI 246
           + L     L+ +    N++    P   L N T L+ L + +N +S +  + +   +L  +
Sbjct: 151 A-LSGLTSLQQLSFG-NQVTDLKP---LANLTTLERLDISSNKVS-DISVLAKLTNLESL 204

Query: 247 DISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGEL 306
             ++N+ S   P  +   L  L  L+L+ N  +++   +++ +  L  LDL++N  S   
Sbjct: 205 IATNNQISDITPLGI---LTNLDELSLNGN--QLKDIGTLASLTNLTDLDLANNQISNLA 259

Query: 307 PRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL 366
           P   LSG   L+ L L  N +         T L  L LN N         +S   +L  L
Sbjct: 260 P---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS--PISNLKNLTYL 314

Query: 367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPG 426
            L  N +    P    +L+ LQ L    N++S  V S  NL+++  L    N  +   P 
Sbjct: 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVS-DVSSLANLTNINWLSAGHNQISDLTP- 370

Query: 427 ALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILD 486
            L   + +T L L D  ++ +   +    S    +      L    P  +         D
Sbjct: 371 -LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPD 427

Query: 487 LSYNKFNGPIPVCFANVTLWTLGQAAGSF 515
           +++N  +    V +      T+G+   +F
Sbjct: 428 ITWNLPSYTNEVSYTFSQPVTIGKGTTTF 456

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  160 bits (407), Expect = 1e-42
 Identities = 99/433 (22%), Positives = 172/433 (39%), Gaps = 36/433 (8%)

Query: 74  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 133
           L    ++++     +    + L       L    +T        ++  +  L  D    +
Sbjct: 3   LGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIK 59

Query: 134 GSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQ 192
              S + ++  + L     S N L  I       L   +L  + + N  +  +   L + 
Sbjct: 60  ---SIDGVEYLNNLTQINFSNNQLTDI--TPLKNLT--KLVDILMNNNQIADITP-LANL 111

Query: 193 LDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNK 252
            +L  + L +N++    P   L+N T L+ L L +N++S +    S    L ++   +  
Sbjct: 112 TNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQV 167

Query: 253 FSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLS 312
              +   N    L  L  L++S N  +V   S ++++  LESL  ++N  S   P   L 
Sbjct: 168 TDLKPLAN----LTTLERLDISSN--KVSDISVLAKLTNLESLIATNNQISDITP---LG 218

Query: 313 GCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNM 372
              +L  LSL+ N L+      + TNL  L L NN  S      LS  T L EL L  N 
Sbjct: 219 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQ 276

Query: 373 LYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSS 432
           +    P     L+ L  L+++ENQL    P S NL +L  L ++ N  +   P  +   +
Sbjct: 277 ISNISP--LAGLTALTNLELNENQLEDISPIS-NLKNLTYLTLYFNNISDISP--VSSLT 331

Query: 433 SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKF 492
            L  L   +N+ S      +   + +  L    NQ+    P  L +L+ +  L L+   +
Sbjct: 332 KLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387

Query: 493 NGPIPVCFANVTL 505
                   ANV++
Sbjct: 388 TNAPVNYKANVSI 400

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (355), Expect = 9e-36
 Identities = 88/433 (20%), Positives = 149/433 (34%), Gaps = 78/433 (18%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
           T +  L  L  L L  N +       L NLT++  L+LSSN ++    S ++ + SL+ L
Sbjct: 106 TPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQL 161

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
           S   N         +L                              L+ L++ +  +  +
Sbjct: 162 SF-GNQVTDLKPLANLTT----------------------------LERLDISSNKVSDI 192

Query: 186 PSFLLHQLD-LRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 244
               L +L  L  +  ++N++    P   L   T LD L L  N L     + +      
Sbjct: 193 SV--LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKD---IGTLAS--- 241

Query: 245 RIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSG 304
                               L  L  L+L+ N      P  +S + +L  L L +N  S 
Sbjct: 242 --------------------LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279

Query: 305 ELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLL 364
             P   L+G  +L+ L L++N L+      N  NL +L L  N+ S      +S  T L 
Sbjct: 280 ISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQ 334

Query: 365 ELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSI 424
            L   NN +         NL+ + +L    NQ+S   P + NL+ + +L ++  A+  + 
Sbjct: 335 RLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTPLA-NLTRITQLGLNDQAWTNAP 391

Query: 425 PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNI 484
                  S    +           P  I++        +  N             S    
Sbjct: 392 VNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYT-NEVSYTFSQPVT 448

Query: 485 LDLSYNKFNGPIP 497
           +      F+G + 
Sbjct: 449 IGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  131 bits (332), Expect = 8e-33
 Identities = 96/482 (19%), Positives = 166/482 (34%), Gaps = 76/482 (15%)

Query: 200 LSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPG 259
                +   F         +     L   +++      +    +  +             
Sbjct: 9   TQDTPINQIFT---DTALAEKMKTVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKS--ID 62

Query: 260 NMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSF 319
            +   L  L  +N S N  ++   + +  + +L  + +++N  +   P   L+   +L+ 
Sbjct: 63  GVEY-LNNLTQINFSNN--QLTDITPLKNLTKLVDILMNNNQIADITP---LANLTNLTG 116

Query: 320 LSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPH 379
           L+L +N +       N TNL  L L++N  S      LS  TSL +L   N +     P 
Sbjct: 117 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVT-DLKP- 172

Query: 380 WFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDL 439
              NL+ L+ LDIS N++S  +     L++L  L    N  +   P  L   ++L  L L
Sbjct: 173 -LANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228

Query: 440 RDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVC 499
             NQ    I   +   + L  L L  NQ+    P  L  L+ L  L L  N+ +   P+ 
Sbjct: 229 NGNQLK-DIGT-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 284

Query: 500 FANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKK 559
                L  L                 T  E   N   ++S + +                
Sbjct: 285 ----GLTAL-----------------TNLELNENQLEDISPISN---------------- 307

Query: 560 RYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKM 619
                    L  +T L    N ++   P  + SL++++ L   +N +S     SL+NL  
Sbjct: 308 ---------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTN 354

Query: 620 IESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLC 679
           I  L   HN +S   P  L  L  ++   ++    +    N     +           L 
Sbjct: 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

Query: 680 GP 681
            P
Sbjct: 413 AP 414

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.8 bits (156), Expect = 9e-11
 Identities = 45/298 (15%), Positives = 95/298 (31%), Gaps = 83/298 (27%)

Query: 362 SLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFN 421
            L    ++ +    QI      L+      + +  ++ +V  + +L  +  L        
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVSQT-DLDQVTTLQADRL--G 57

Query: 422 GSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSL 481
                 +   ++LT ++  +NQ +   P                          L +L+ 
Sbjct: 58  IKSIDGVEYLNNLTQINFSNNQLTDITP--------------------------LKNLTK 91

Query: 482 LNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEV 541
           L  + ++ N+     P+      L  L                 T    + N   ++  +
Sbjct: 92  LVDILMNNNQIADITPLA----NLTNL-----------------TGLTLFNNQITDIDPL 130

Query: 542 KHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNL 601
           K+                         L  +  L+ S N ++    S +  L+ ++ L+ 
Sbjct: 131 KN-------------------------LTNLNRLELSSNTISD--ISALSGLTSLQQLSF 163

Query: 602 SHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTP 659
            +        + L+NL  +E LD+S N +S      L +L  L +   + N +S  TP
Sbjct: 164 GNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  162 bits (413), Expect = 7e-43
 Identities = 87/476 (18%), Positives = 171/476 (35%), Gaps = 67/476 (14%)

Query: 71  LKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
              L  L L  + +   +      +L  ++ LDLS N L+    S    + SL+YL+L  
Sbjct: 49  CANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107

Query: 130 NNFEGSFSFNSLKNHSKLQVFKLS--NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPS 187
           N ++     +   N + LQ  ++    +  +I   +F GL    L  L ++  SL    S
Sbjct: 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT--SLNELEIKALSLRNYQS 165

Query: 188 FLLHQL-DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF------------ 234
             L  + D+  + L  ++             + +  L L + +L+               
Sbjct: 166 QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 235 --------------------QLPSSKHDLLRIDISHNKFSGQLPGNMGKI---------- 264
                               +L     +L  ++      +G    N  +           
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 324
              +  L++ +      + +  S +++++ + + ++     +P  F     SL FL LS+
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343

Query: 325 NHLQGEVVFPNS-----TNLCWLYLNNNHFS--GKIQDGLSKATSLLELDLSNNMLYGQI 377
           N +  E +  ++      +L  L L+ NH     K  + L    +L  LD+S N     +
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPM 402

Query: 378 PHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVL 437
           P        ++FL++S   +   V +     +L  L +  N  + S    L     L  L
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIR-VVKTC-IPQTLEVLDVSNNNLD-SFSLFL---PRLQEL 456

Query: 438 DLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFN 493
            +  N+   ++P     F  L ++ +  NQLK         L+ L  + L  N ++
Sbjct: 457 YISRNKLK-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  160 bits (407), Expect = 4e-42
 Identities = 85/456 (18%), Positives = 154/456 (33%), Gaps = 53/456 (11%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-NLQSVIANIKSLEYLSLDD 129
           L  L  LDLS N+L    S     L+ +K L+L  N      + S+  N+ +L+ L + +
Sbjct: 73  LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132

Query: 130 NNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSF 188
                          + L   ++   SL   +++    +    +  L L       L   
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR--DIHHLTLHLSESAFLLEI 190

Query: 189 LLHQL-DLRFIDLSHNKLQGTFPSWLLQ-------NNTKLDTLYLLNNSLSGNFQLPSSK 240
               L  +R+++L    L     S L                  L + S +   +L    
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250

Query: 241 HDLLRIDISHNKFSGQLPGNMGKI----------LPELLSLNLSENGFEVRIPSSMSEMK 290
            +L  ++      +G    N  +              +  L++ +      + +  S ++
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310

Query: 291 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFS 350
           +++ + + ++     +P  F     SL FL LS+N +               YL N+   
Sbjct: 311 KVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVE------------EYLKNSACK 357

Query: 351 GKIQDGLSKATSLLELDLSNNMLY--GQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLS 408
           G          SL  L LS N L    +       L  L  LDIS N       S     
Sbjct: 358 GAW-------PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410

Query: 409 SLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQL 468
            +R L +        +   +    +L VLD+ +N    S  +       L  L +  N+L
Sbjct: 411 KMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNKL 463

Query: 469 KGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVT 504
           K  +P+      +L ++ +S N+        F  +T
Sbjct: 464 K-TLPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLT 497

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  145 bits (368), Expect = 6e-37
 Identities = 85/454 (18%), Positives = 156/454 (34%), Gaps = 53/454 (11%)

Query: 74  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLT----------GNLQ---------- 113
           +  LDLS N +       L    +++VL L S+++           G+L+          
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 114 ----SVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS--NSLVKIETEEFPGL 167
               S    + SL+YL+L  N ++     +   N + LQ  ++    +  +I   +F GL
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 168 PEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLL 226
               L  L ++  SL    S  L  + D+  + L  ++             + +  L L 
Sbjct: 148 T--SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELR 204

Query: 227 NNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSM 286
           + +L+     P    ++             L       L +LL   L  +  E    +  
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT-- 262

Query: 287 SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYL 344
             +  L   + S ++   EL +       ++  L +   +L      V+     +  + +
Sbjct: 263 --LNGLGDFNPSESDVVSELGK---VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317

Query: 345 NNNHFSGKIQDGLSKATSLLELDLSNNML---YGQIPHWFGNLSGLQFLDISENQLS--G 399
            N+              SL  LDLS N++   Y +     G    LQ L +S+N L    
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 400 SVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYL 458
                   L +L  L +  N F+  +P + +    +  L+L          +       L
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTL 433

Query: 459 GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKF 492
            +L +  N L  +       L  L  L +S NK 
Sbjct: 434 EVLDVSNNNLD-SFSL---FLPRLQELYISRNKL 463

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (359), Expect = 8e-36
 Identities = 73/426 (17%), Positives = 132/426 (30%), Gaps = 43/426 (10%)

Query: 100 VLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLV 157
           V D  S   T    S+ + +  +++ L L  N          L+  + LQV  L  + + 
Sbjct: 9   VCDGRSRSFT----SIPSGLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN 63

Query: 158 KIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQGTFPSWLLQN 216
            IE + F  L    L+ L+L +  L +L S     L  L++++L  N  Q    + L  N
Sbjct: 64  TIEGDAFYSLG--SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 217 NTKLDTLYLLNNSLSGNFQLPSSKH--DLLRIDISHNKFSGQLPGNMGKILPELLSLNLS 274
            T L TL + N       +         L  ++I              K + ++  L L 
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLH 180

Query: 275 ENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG----- 329
            +     +      +  +  L+L   N +       L      S +              
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 330 ---------------EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY 374
                          EV F + T       N +      + G  +  ++  L +    L+
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299

Query: 375 GQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSI---PGALRR 430
             +   +  L  ++ + +  +++     S   +L SL  L +  N               
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 431 SSSLTVLDLRDNQFSGSIPIWINEFSYLG---ILLLRGNQLKGNIPNQLCHLSLLNILDL 487
             SL  L L  N    S+         L     L +  N     +P+       +  L+L
Sbjct: 360 WPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 488 SYNKFN 493
           S     
Sbjct: 418 SSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  133 bits (337), Expect = 5e-33
 Identities = 68/410 (16%), Positives = 128/410 (31%), Gaps = 36/410 (8%)

Query: 266 PELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN 325
                 +     F   IPS ++    ++SLDLS N  +  +    L  C +L  L L  +
Sbjct: 5   DASGVCDGRSRSFT-SIPSGLTA--AMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSS 60

Query: 326 HLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG-QIPHWFG 382
            +       F +  +L  L L++NH S          +SL  L+L  N      +   F 
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 383 NLSGLQFLDISENQLSGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLR 440
           NL+ LQ L I   +    +       L+SL  L +   +       +L+    +  L L 
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 441 DNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCF 500
            ++ +  + I+ +  S +  L LR   L     + L    + + +     + +      F
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 501 ANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKR 560
             +                              S +E  +       +G           
Sbjct: 241 NELL--------------------KLLRYILELSEVEFDDCTL----NGLGDFNPSESDV 276

Query: 561 YESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMI 620
                      +  L      L  D+ +    L +++ + + ++ +         +LK +
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 336

Query: 621 ESLDLSHNDLSGQIPPQLTELNFLSN---FNVSYNHLSGPTPNAGQFANF 667
           E LDLS N +  +            +     +S NHL             
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  126 bits (319), Expect = 9e-31
 Identities = 78/432 (18%), Positives = 137/432 (31%), Gaps = 42/432 (9%)

Query: 247 DISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGEL 306
           D     F+  +P     +   + SL+LS N         +     L+ L L S+  +  +
Sbjct: 11  DGRSRSFT-SIPSG---LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TI 65

Query: 307 PRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSL 363
                    SL  L LSDNHL       F   ++L +L L  N +       L    T+L
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125

Query: 364 LELDLSNNMLYGQIP-HWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFN 421
             L + N   + +I    F  L+ L  L+I    L      S  ++  +  L +H++   
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 422 GSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKG----------N 471
             +       SS+  L+LRD   +      +        +     +              
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245

Query: 472 IPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAY 531
           +   +  LS +   D + N      P     V+     +      L      +  +    
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS-- 303

Query: 532 YNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTG---LDFSCNELTGDI-- 586
                 L +VK             +   +          ++     LD S N +  +   
Sbjct: 304 -TVYSLLEKVKRIT----------VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 587 -PSEIGSLSEIRALNLSHNFLS--GSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNF 643
             +  G+   ++ L LS N L       + L  LK + SLD+S N     +P        
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK 411

Query: 644 LSNFNVSYNHLS 655
           +   N+S   + 
Sbjct: 412 MRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQI 634
           LD S N     +P       ++R LNLS   +   +   +   + +E LD+S+N+L    
Sbjct: 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SF 446

Query: 635 PPQLTELNFLSNFNVSYNHLS 655
              L  L  L    +S N L 
Sbjct: 447 SLFLPRLQEL---YISRNKLK 464

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  150 bits (382), Expect = 5e-40
 Identities = 80/406 (19%), Positives = 148/406 (36%), Gaps = 50/406 (12%)

Query: 75  VELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEG 134
           V +D+   ++Y         L + K++   ++ +     +++ + + +E L+L+D   E 
Sbjct: 26  VHIDMQTQDVYFGFED--ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE- 82

Query: 135 SFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL 193
                +      +Q   +  N++  +    F  +P   L  L L    L +LP  + H  
Sbjct: 83  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP--LLTVLVLERNDLSSLPRGIFHNT 140

Query: 194 -DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNK 252
             L  + +S+N L+        Q  T L  L L +N L+              +D+S   
Sbjct: 141 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-------------HVDLS--- 183

Query: 253 FSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLS 312
                      ++P L   N+S N       S+++    +E LD S N+ +  +      
Sbjct: 184 -----------LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNV 226

Query: 313 GCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNM 372
               L+ L L  N+L       N   L  + L+ N     +     K   L  L +SNN 
Sbjct: 227 ---ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 373 LYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSS 432
           L   +  +   +  L+ LD+S N L     +      L  LY+  N+   ++  +     
Sbjct: 284 L-VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKLST--HH 339

Query: 433 SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCH 478
           +L  L L  N +  +    +  F  +    +        I  QL H
Sbjct: 340 TLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  146 bits (371), Expect = 2e-38
 Identities = 67/377 (17%), Positives = 128/377 (33%), Gaps = 26/377 (6%)

Query: 58  VPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA 117
               V+       L     +    + +    +  L +   +++L+L+  Q+        A
Sbjct: 31  QTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA 90

Query: 118 NIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALN 176
              +++ L +  N        +  +N   L V  L  N L  +    F   P  +L  L+
Sbjct: 91  YAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP--KLTTLS 147

Query: 177 LRNCSLHALPSFLLHQLD-LRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQ 235
           + N +L  +          L+ + LS N+L       L+ +   L    +  N LS    
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPS---LFHANVSYNLLSTLAI 203

Query: 236 LPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESL 295
             +    +  +D SHN  +  + G    +  EL  L L  N   +   + +     L  +
Sbjct: 204 PIA----VEELDASHNSIN-VVRGP---VNVELTILKLQHN--NLTDTAWLLNYPGLVEV 253

Query: 296 DLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG-EVVFPNSTNLCWLYLNNNHFSGKIQ 354
           DLS N    ++          L  L +S+N L    +       L  L L++NH    ++
Sbjct: 254 DLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVE 311

Query: 355 DGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLY 414
               +   L  L L +N +   +         L+ L +S N    +   +    ++ R  
Sbjct: 312 RNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWDCNSLRAL-FRNVARPA 367

Query: 415 MHMNAFNGSIPGALRRS 431
           +     +  I   L   
Sbjct: 368 VDDADQHCKIDYQLEHG 384

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  144 bits (366), Expect = 9e-38
 Identities = 74/376 (19%), Positives = 138/376 (36%), Gaps = 48/376 (12%)

Query: 121 SLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRN 179
               + +D    +  F F  +   +  ++     +++ K+           Q++ LNL +
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFR--QVELLNLND 78

Query: 180 CSLHALPSFLLHQL-DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPS 238
             +  + ++       ++ + +  N ++   P  + QN   L  L L  N LS       
Sbjct: 79  LQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS------- 130

Query: 239 SKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLS 298
                             LP  +    P+L +L++S N  E     +      L++L LS
Sbjct: 131 -----------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173

Query: 299 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLS 358
           SN  +  +    +    SL   ++S N L           +  L  ++N  +  ++  ++
Sbjct: 174 SNRLT-HVDLSLIP---SLFHANVSYNLLS---TLAIPIAVEELDASHNSIN-VVRGPVN 225

Query: 359 KATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHM 417
               L  L L +N L      W  N  GL  +D+S N+L   +   F  +  L RLY+  
Sbjct: 226 --VELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 418 NAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLC 477
           N    ++    +   +L VLDL  N     +     +F  L  L L  N +   +     
Sbjct: 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST- 337

Query: 478 HLSLLNILDLSYNKFN 493
               L  L LS+N ++
Sbjct: 338 -HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (264), Expect = 2e-24
 Identities = 57/295 (19%), Positives = 114/295 (38%), Gaps = 20/295 (6%)

Query: 214 LQNNTKLDTLYLLNNSLSGNFQLPSSK-HDLLRIDISHNKFSGQLPGNMGKILPELLSLN 272
           LQ +     +++   +    F       ++   +   ++    +LP  +     ++  LN
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 273 LSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--E 330
           L++   E     + +    ++ L +  N     LP         L+ L L  N L     
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 331 VVFPNSTNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPHWFGNLSGLQF 389
            +F N+  L  L ++NN+   +I+D      TSL  L LS+N L   +      +  L  
Sbjct: 135 GIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFH 190

Query: 390 LDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449
            ++S N LS    +     ++  L    N+ N  + G +  +  LT+L L+ N  +    
Sbjct: 191 ANVSYNLLS----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLT-DTA 242

Query: 450 IWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVT 504
            W+  +  L  + L  N+L+  + +    +  L  L +S N+    + +    + 
Sbjct: 243 -WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 295

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.6 bits (220), Expect = 7e-19
 Identities = 57/336 (16%), Positives = 111/336 (33%), Gaps = 35/336 (10%)

Query: 333 FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDI 392
                    ++++                +   +   N+ +         +   ++ L++
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 393 SENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIW 451
           ++ Q+      +F    ++++LYM  NA     P   +    LTVL L  N  S S+P  
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRG 135

Query: 452 I-NEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQ 510
           I +    L  L +  N L+    +     + L  L LS N+          ++    +  
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 195

Query: 511 AAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILN 570
                        +ST         L+ S                         +G +  
Sbjct: 196 -----------NLLSTLAIPIAVEELDASH------------------NSINVVRGPVNV 226

Query: 571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDL 630
            +T L    N LT D    + +   +  ++LS+N L   +      ++ +E L +S+N L
Sbjct: 227 ELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 631 SGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFAN 666
              +      +  L   ++S+NHL     N  QF  
Sbjct: 285 V-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 319

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
           +  +  L  S N L   +      +  ++ L+LSHN L   + ++      +E+L L HN
Sbjct: 271 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 328

Query: 629 DLSGQIPPQLTELNFLSNFNVSYNHLS 655
            +   +       + L N  +S+N   
Sbjct: 329 SIV-TLKLST--HHTLKNLTLSHNDWD 352

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  149 bits (379), Expect = 6e-39
 Identities = 74/332 (22%), Positives = 125/332 (37%), Gaps = 36/332 (10%)

Query: 96  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-N 154
           T  ++LDL  N++    Q   A+   LE L L++N    +    +  N   L+   L  N
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN 90

Query: 155 SLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLD-LRFIDLSHNKLQGTFPSWL 213
            L  I    F GL    L  L++    +  L  ++   L  L+ +++  N L        
Sbjct: 91  RLKLIPLGVFTGLS--NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRA 147

Query: 214 LQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNL 273
                 L+ L L   +L+                I     S          L  L+ L L
Sbjct: 148 FSGLNSLEQLTLEKCNLT---------------SIPTEALSH---------LHGLIVLRL 183

Query: 274 SENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EV 331
                      S   + RL+ L++S   +   +    L G  +L+ LS++  +L     +
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYL 242

Query: 332 VFPNSTNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFL 390
              +   L +L L+ N  S  I+   L +   L E+ L    L    P+ F  L+ L+ L
Sbjct: 243 AVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301

Query: 391 DISENQLSGSVPSSF-NLSSLRRLYMHMNAFN 421
           ++S NQL+    S F ++ +L  L +  N   
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  134 bits (340), Expect = 8e-34
 Identities = 71/333 (21%), Positives = 127/333 (38%), Gaps = 21/333 (6%)

Query: 171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSL 230
           Q +A+        A+P  +    + R +DL  N+++ T       +   L+ L L  N +
Sbjct: 12  QDRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIV 68

Query: 231 S----GNFQ-LPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSS 285
           S    G F  L +    L  + +  N+    +P  +   L  L  L++SEN   + +   
Sbjct: 69  SAVEPGAFNNLFN----LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYM 123

Query: 286 MSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTNLCWLY 343
             ++  L+SL++  N+    +  +  SG  SL  L+L   +L         +   L  L 
Sbjct: 124 FQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182

Query: 344 LNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVP 402
           L + + +  I+D    +   L  L++S+      +         L  L I+   L+    
Sbjct: 183 LRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241

Query: 403 SSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGIL 461
            +  +L  LR L +  N  +      L     L  + L   Q +   P      +YL +L
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301

Query: 462 LLRGNQLKGNIPNQLCH-LSLLNILDLSYNKFN 493
            + GNQL   +   + H +  L  L L  N   
Sbjct: 302 NVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  112 bits (282), Expect = 2e-26
 Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 16/240 (6%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
           L  L +LD+S+N +   L     +L ++K L++  N L        + + SLE L+L+  
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162

Query: 131 NFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNL-RNCSLHALPSF 188
           N   S    +L +   L V +L   ++  I    F  L   +LK L +     L  +   
Sbjct: 163 NLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY--RLKVLEISHWPYLDTMTPN 219

Query: 189 LLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLS----GNFQ-LPSSKHDL 243
            L+ L+L  + ++H  L    P   +++   L  L L  N +S         L      L
Sbjct: 220 CLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR----L 274

Query: 244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFS 303
             I +   + +  +     + L  L  LN+S N       S    +  LE+L L SN  +
Sbjct: 275 QEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (277), Expect = 9e-26
 Identities = 49/250 (19%), Positives = 88/250 (35%), Gaps = 14/250 (5%)

Query: 266 PELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN 325
            +  ++      F   +P  +        LDL  N     L +   +    L  L L++N
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGIPT--ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNEN 66

Query: 326 HLQ--GEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGN 383
            +       F N  NL  L L +N          +  ++L +LD+S N +   + + F +
Sbjct: 67  IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 384 LSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDN 442
           L  L+ L++ +N L      +F  L+SL +L +           AL     L VL LR  
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186

Query: 443 QFSGSIPIWINEFSYLG---ILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVC 499
             +    I    F  L    +L +        +     +   L  L +++        + 
Sbjct: 187 NINA---IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243

Query: 500 FANVT-LWTL 508
             ++  L  L
Sbjct: 244 VRHLVYLRFL 253

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 29/153 (18%)

Query: 56  SGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPC-LSNLTHIKVLDLSSNQLTGNLQS 114
           S  P    +         L  L ++  NL   +    + +L +++ L+LS N ++    S
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

Query: 115 VIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKA 174
           ++  +  L+ + L                            L  +E   F GL    L+ 
Sbjct: 267 MLHELLRLQEIQLVGGQ------------------------LAVVEPYAFRGLN--YLRV 300

Query: 175 LNLRNCSLHALPSFLLHQLD-LRFIDLSHNKLQ 206
           LN+    L  L   + H +  L  + L  N L 
Sbjct: 301 LNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 569 LNYMTGLDFSCNELTGDIPSEI-GSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSH 627
           LN +  L      LT  IP+E    L  +  L L H  ++     S   L  ++ L++SH
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 628 NDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA 661
                 + P       L++ ++++ +L+     A
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 567 DILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLS 626
            I      LD   N +      E  S   +  L L+ N +S   P + +NL  + +L L 
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88

Query: 627 HNDLSGQIPPQ-LTELNFLSNFNVSYNHLS 655
            N L   IP    T L+ L+  ++S N + 
Sbjct: 89  SNRLK-LIPLGVFTGLSNLTKLDISENKIV 117

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  146 bits (371), Expect = 7e-39
 Identities = 68/350 (19%), Positives = 134/350 (38%), Gaps = 29/350 (8%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
           L + +   L K ++          L  I  L ++  ++  ++Q  I  + +LEYL+L+ N
Sbjct: 21  LAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGN 76

Query: 131 NFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFL 189
                   ++L     L    +  N +  I       L    L+ L L   ++  +    
Sbjct: 77  QITDISPLSNLVK---LTNLYIGTNKITDI--SALQNLT--NLRELYLNEDNISDISP-- 127

Query: 190 LHQL-DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDI 248
           L  L  +  ++L  N          L N T L+ L +  + +     + ++  DL  + +
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPI-ANLTDLYSLSL 184

Query: 249 SHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPR 308
           ++N+        +   L  L       N  ++   + ++ M RL SL + +N  +   P 
Sbjct: 185 NYNQIED--ISPLAS-LTSLHYFTAYVN--QITDITPVANMTRLNSLKIGNNKITDLSP- 238

Query: 309 QFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL 368
             L+    L++L +  N +       + T L  L + +N  S      L+  + L  L L
Sbjct: 239 --LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFL 294

Query: 369 SNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMN 418
           +NN L  +     G L+ L  L +S+N ++  +    +LS +        
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHIT-DIRPLASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  139 bits (353), Expect = 2e-36
 Identities = 82/419 (19%), Positives = 140/419 (33%), Gaps = 77/419 (18%)

Query: 74  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 133
              L      +   + P  ++L       L    +T         ++S+  L +      
Sbjct: 2   AATLATLPAPI-NQIFP-DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 134 GSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFL-LHQ 192
                  L N                            L+ LNL    +  +     L +
Sbjct: 58  SIQGIEYLTN----------------------------LEYLNLNGNQITDISPLSNLVK 89

Query: 193 LDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNK 252
           L    + +  NK+     +  LQN T L  LYL  +++S    +    +           
Sbjct: 90  L--TNLYIGTNKIT-DISA--LQNLTNLRELYLNEDNISD---ISPLAN----------- 130

Query: 253 FSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLS 312
                       L ++ SLNL  N   +   S +S M  L  L ++ +      P   ++
Sbjct: 131 ------------LTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTP---IA 174

Query: 313 GCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNM 372
               L  LSL+ N ++      + T+L +     N  +      ++  T L  L + NN 
Sbjct: 175 NLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNK 232

Query: 373 LYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSS 432
           +    P    NLS L +L+I  NQ+S  + +  +L+ L+ L +  N  +      L   S
Sbjct: 233 ITDLSP--LANLSQLTWLEIGTNQIS-DINAVKDLTKLKMLNVGSNQISD--ISVLNNLS 287

Query: 433 SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491
            L  L L +NQ        I   + L  L L  N +    P  L  LS ++  D +   
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (344), Expect = 3e-35
 Identities = 71/334 (21%), Positives = 143/334 (42%), Gaps = 28/334 (8%)

Query: 67  GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 126
              EL+ + +L ++   +   +   +  LT+++ L+L+ NQ+T    S ++N+  L  L 
Sbjct: 39  TQEELESITKLVVAGEKV-ASIQG-IEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLY 94

Query: 127 LDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
           +  N        ++L+N + L+   L+ +++  I       L   ++ +LNL      + 
Sbjct: 95  IGTNKIT---DISALQNLTNLRELYLNEDNISDIS--PLANLT--KMYSLNLGANHNLSD 147

Query: 186 PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 245
            S L +   L ++ ++ +K++   P   + N T L +L L  N +     L +S   L  
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISPL-ASLTSLHY 203

Query: 246 IDISHNKFSGQLP-GNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSG 304
                N+ +   P  N    +  L SL +  N  ++   S ++ + +L  L++ +N  S 
Sbjct: 204 FTAYVNQITDITPVAN----MTRLNSLKIGNN--KITDLSPLANLSQLTWLEIGTNQISD 257

Query: 305 ELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLL 364
            +    +     L  L++  N +    V  N + L  L+LNNN    +  + +   T+L 
Sbjct: 258 -IN--AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 365 ELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLS 398
            L LS N +    P    +LS +   D +   + 
Sbjct: 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  117 bits (296), Expect = 6e-29
 Identities = 66/337 (19%), Positives = 126/337 (37%), Gaps = 31/337 (9%)

Query: 172 LKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNN--- 228
              L      ++ +        +     L    +         +    +  L +      
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVA 57

Query: 229 SLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSE 288
           S+ G   L +    L  ++++ N+ +   P      L +L +L +  N  ++   S++  
Sbjct: 58  SIQGIEYLTN----LEYLNLNGNQITDISPL---SNLVKLTNLYIGTN--KITDISALQN 108

Query: 289 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNN 347
           +  L  L L+ +N S   P   L+    +  L+L  NH   ++    N T L +L +  +
Sbjct: 109 LTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165

Query: 348 HFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNL 407
                    ++  T L  L L+ N +    P    +L+ L +     NQ++  +    N+
Sbjct: 166 KVKDVT--PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITPVANM 220

Query: 408 SSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQ 467
           + L  L +  N      P  L   S LT L++  NQ S    +   + + L +L +  NQ
Sbjct: 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAV--KDLTKLKMLNVGSNQ 276

Query: 468 LKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVT 504
           +  +I   L +LS LN L L+ N+           +T
Sbjct: 277 IS-DISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.1 bits (209), Expect = 1e-17
 Identities = 47/343 (13%), Positives = 107/343 (31%), Gaps = 84/343 (24%)

Query: 317 LSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ 376
            + L+     +       +        L     +  +     +  S+ +L ++   +   
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKV-AS 58

Query: 377 IPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTV 436
           I      L+ L++L+++ NQ++  +    NL  L  LY+  N    +   AL+  ++L  
Sbjct: 59  IQG-IEYLTNLEYLNLNGNQIT-DISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRE 114

Query: 437 LDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPI 496
           L L ++  S   P                          L +L+ +  L+L  N     +
Sbjct: 115 LYLNEDNISDISP--------------------------LANLTKMYSLNLGANHNLSDL 148

Query: 497 PVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFM 556
                   L                           +   +++ + +             
Sbjct: 149 SPLSNMTGL--------------------NYLTVTESKVKDVTPIAN------------- 175

Query: 557 TKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSN 616
                       L  +  L  + N++     S + SL+ +       N ++   P  ++N
Sbjct: 176 ------------LTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VAN 219

Query: 617 LKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTP 659
           +  + SL + +N ++   P  L  L+ L+   +  N +S    
Sbjct: 220 MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA 260

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.5 bits (171), Expect = 8e-13
 Identities = 50/274 (18%), Positives = 92/274 (33%), Gaps = 58/274 (21%)

Query: 386 GLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFS 445
           G   L      ++   P + +L+   R  +   +    +        S+T L +   + +
Sbjct: 1   GAATLATLPAPINQIFPDA-DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 446 GSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTL 505
            SI   I   + L  L L GNQ+    P  L +L  L  L +  NK      +      L
Sbjct: 58  -SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQ----NL 109

Query: 506 WTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYK 565
             L                  E     ++  ++S + +                      
Sbjct: 110 TNL-----------------RELYLNEDNISDISPLAN---------------------- 130

Query: 566 GDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDL 625
              L  M  L+   N    D+ S + +++ +  L ++ + +    P  ++NL  + SL L
Sbjct: 131 ---LTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184

Query: 626 SHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTP 659
           ++N +    P  L  L  L  F    N ++  TP
Sbjct: 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.9 bits (133), Expect = 4e-08
 Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
           L  +  L+   N+++    S + +LS++ +L L++N L     + +  L  + +L LS N
Sbjct: 264 LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 629 DLSGQIPPQLTELNFLSNFNVSYNHLS 655
            ++   P  L  L+ + + + +   + 
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQI 634
           L+   N+++    + +  L++++ LN+  N +S      L+NL  + SL L++N L  + 
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303

Query: 635 PPQLTELNFLSNFNVSYNHLSGPTP 659
              +  L  L+   +S NH++   P
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP 328

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  151 bits (382), Expect = 1e-38
 Identities = 80/406 (19%), Positives = 145/406 (35%), Gaps = 50/406 (12%)

Query: 75  VELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEG 134
           V +D+   ++Y         L + K++   ++ +     +++ + + +E L+L+D   E 
Sbjct: 32  VHIDMQTQDVYFGFEDI--TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE- 88

Query: 135 SFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL 193
                +      +Q   +  N++  +    F  +P   L  L L    L +LP  + H  
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP--LLTVLVLERNDLSSLPRGIFHNT 146

Query: 194 -DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNK 252
             L  + +S+N L+        Q  T L  L L +N L+              +D+S   
Sbjct: 147 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-------------HVDLS--- 189

Query: 253 FSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLS 312
                      ++P L   N+S N       S+++    +E LD S N+ +  +      
Sbjct: 190 -----------LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNV 232

Query: 313 GCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNM 372
               L+ L L  N+L       N   L  + L+ N     +     K   L  L +SNN 
Sbjct: 233 ---ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289

Query: 373 LYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSS 432
           L   +  +   +  L+ LD+S N L     +      L  LY+  N+             
Sbjct: 290 L-VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH---H 345

Query: 433 SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCH 478
           +L  L L  N +  +    +  F  +    +        I  QL H
Sbjct: 346 TLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  131 bits (330), Expect = 4e-32
 Identities = 66/363 (18%), Positives = 123/363 (33%), Gaps = 48/363 (13%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
            +++  L+L+   +    +   +    I+ L +  N +      V  N+  L  L L+ N
Sbjct: 74  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133

Query: 131 NFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFL 189
           +   S       N  KL    +S N+L +IE + F       L+ L L +  L  +   L
Sbjct: 134 DLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT--SLQNLQLSSNRLTHVDLSL 190

Query: 190 LHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDIS 249
           +    L   ++S+N L        L     ++ L   +NS++                  
Sbjct: 191 IPS--LFHANVSYNLLS------TLAIPIAVEELDASHNSIN------------------ 224

Query: 250 HNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQ 309
                  + G    +  EL  L L  N   +   + +     L  +DLS N    ++   
Sbjct: 225 ------VVRGP---VNVELTILKLQHN--NLTDTAWLLNYPGLVEVDLSYNELE-KIMYH 272

Query: 310 FLSGCFSLSFLSLSDNHLQG-EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL 368
                  L  L +S+N L    +       L  L L++NH    ++    +   L  L L
Sbjct: 273 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331

Query: 369 SNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGAL 428
            +N +   +         L+ L +S N    +   +    ++ R  +     +  I   L
Sbjct: 332 DHNSI-VTLK--LSTHHTLKNLTLSHNDWDCNSLRAL-FRNVARPAVDDADQHCKIDYQL 387

Query: 429 RRS 431
              
Sbjct: 388 EHG 390

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  108 bits (270), Expect = 1e-24
 Identities = 62/392 (15%), Positives = 120/392 (30%), Gaps = 81/392 (20%)

Query: 265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 324
                 +++     +V        +   + +   ++    +LP   L     +  L+L+D
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLND 84

Query: 325 NHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNL 384
             ++               ++   F+         A ++ +L +  N +    PH F N+
Sbjct: 85  LQIE--------------EIDTYAFAY--------AHTIQKLYMGFNAIRYLPPHVFQNV 122

Query: 385 SGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQ 443
             L  L +  N LS      F N   L  L M  N          + ++SL  L L  N+
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182

Query: 444 FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANV 503
            +  + +  +    L    +  N L       L     +  LD S+N  N         +
Sbjct: 183 LT-HVDL--SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVEL 234

Query: 504 TLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYES 563
           T+  L                             L++                       
Sbjct: 235 TILKL-------------------------QHNNLTDTAWLLN----------------- 252

Query: 564 YKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESL 623
                   +  +D S NEL   +      +  +  L +S+N L  ++      +  ++ L
Sbjct: 253 -----YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 306

Query: 624 DLSHNDLSGQIPPQLTELNFLSNFNVSYNHLS 655
           DLSHN L   +     + + L N  + +N + 
Sbjct: 307 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 94.2 bits (234), Expect = 3e-20
 Identities = 67/346 (19%), Positives = 121/346 (34%), Gaps = 31/346 (8%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
             KL  L +S NNL           T ++ L LSSN+LT ++   ++ I SL + ++  N
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN 202

Query: 131 NFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFL 189
                    +L     ++    S NS+  +       L       L L++ +L       
Sbjct: 203 LLS------TLAIPIAVEELDASHNSINVVRGPVNVELTI-----LKLQHNNLTDTAWL- 250

Query: 190 LHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDIS 249
           L+   L  +DLS+N+L+            +L+ LY+ NN L            L  +D+S
Sbjct: 251 LNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 309

Query: 250 HNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQ 309
           HN     +  N  +    L +L L  N     +  S      L++L LS N++     R 
Sbjct: 310 HNHLL-HVERNQPQ-FDRLENLYLDHNSIV-TLKLST--HHTLKNLTLSHNDWDCNSLRA 364

Query: 310 FLSGCFSLSFLSLSDNHLQGEVV---------FPNSTNLCWLYLNNNHFSGKIQDGLSKA 360
                   +      +      +              +    Y+       K+Q    + 
Sbjct: 365 LFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRC 424

Query: 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFN 406
           ++   ++   ++ +         L G + L+   N+L   V    N
Sbjct: 425 SATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTN 470

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.9 bits (215), Expect = 7e-18
 Identities = 61/339 (17%), Positives = 114/339 (33%), Gaps = 42/339 (12%)

Query: 335 NSTNLCWLYLNN-NHFSGKIQDGLSKAT--SLLELDLSNNMLYGQIPHWFGNLSGLQFLD 391
           N    C  Y  + +  +  +  G    T  +   +   N+ +         +   ++ L+
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81

Query: 392 ISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPI 450
           +++ Q+      +F    ++++LYM  NA     P   +    LTVL L  N  S S+P 
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR 140

Query: 451 WINEFSYLG---ILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWT 507
               F        L +  N L+    +     + L  L LS N+          ++    
Sbjct: 141 --GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN 198

Query: 508 LGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGD 567
           +               +ST         L+ S                         +G 
Sbjct: 199 VSY-----------NLLSTLAIPIAVEELDASH------------------NSINVVRGP 229

Query: 568 ILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSH 627
           +   +T L    N LT D    + +   +  ++LS+N L   +      ++ +E L +S+
Sbjct: 230 VNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 628 NDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFAN 666
           N L   +      +  L   ++S+NHL     N  QF  
Sbjct: 288 NRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 325

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 45/288 (15%), Positives = 86/288 (29%), Gaps = 26/288 (9%)

Query: 64  VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 123
           +N     +  L  LDLS N+L  H+         ++ L L  N +   L+  ++   +L+
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLK 348

Query: 124 YLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLH 183
            L+L  N+++ +      +N ++  V             E     +   K    R     
Sbjct: 349 NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYI 408

Query: 184 ALPSFL------------------LHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYL 225
           AL S +                  +  L           LQG        N  + +   L
Sbjct: 409 ALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQL 468

Query: 226 LNNSLSGNFQ---LPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGF-EVR 281
            N  +        L +     LR          +   N+ K+   L      +    + R
Sbjct: 469 TNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQAR 528

Query: 282 IPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG 329
              + ++ K  E L+  +     +L  +           SL    ++ 
Sbjct: 529 RTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  146 bits (371), Expect = 9e-38
 Identities = 61/444 (13%), Positives = 136/444 (30%), Gaps = 32/444 (7%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
             +     ++ ++L   L+    +  ++K LDLS N L+    + +A    LE L+L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 131 NFEGSFSFNSLKN----------------HSKLQVFKLS-NSLVKIETEEFPGLPEYQLK 173
               +    SL                     ++    + N++ ++      G      K
Sbjct: 69  VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG-----KK 123

Query: 174 ALNLRNCSLHALPSFLLHQLD-LRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSG 232
            + L N  +  L          ++++DL  N++     + L  ++  L+ L L  N +  
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 233 NFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRL 292
           + +       L  +D+S NK +  +          +  ++L  N     I  ++   + L
Sbjct: 183 DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNL 239

Query: 293 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGK 352
           E  DL  N F     R F S    +  ++               T     +         
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 353 IQDGLSKATSLLELDLSNNMLYG----QIPHWFGNLSGLQFLDISENQLSGSVPSSF-NL 407
                 +  +L   + +     G    ++     N +  + +D  + Q    +       
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 408 SSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQ 467
            +   L     A +  +    R  + L     +             +     +  +    
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRY 419

Query: 468 LKGNIPNQLCHLSLLNILDLSYNK 491
            +  +  Q    + +   D+  +K
Sbjct: 420 EEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  138 bits (350), Expect = 4e-35
 Identities = 57/400 (14%), Positives = 120/400 (30%), Gaps = 46/400 (11%)

Query: 112 LQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEY 170
           +  +  N    +   + D++ +     +  ++   ++   LS N L +I   +       
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-- 58

Query: 171 QLKALNLRNCSLHALPSFLLHQLD-LRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNS 229
           +L+ LNL +  L+         L  LR +DL++N +Q       L     ++TL+  NN+
Sbjct: 59  KLELLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNN 110

Query: 230 LSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEM 289
           +S   ++  S                              ++ L+ N   +         
Sbjct: 111 IS---RVSCS------------------------RGQGKKNIYLANNKITMLRDLDEGCR 143

Query: 290 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHF 349
            R++ LDL  N        +  +   +L  L+L  N +           L  L L++N  
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKL 203

Query: 350 SGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSS 409
           +  +      A  +  + L NN L   I         L+  D+  N         F   +
Sbjct: 204 A-FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 410 LRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLK 469
            R   +                +  T+              + +    L          +
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 470 GN----IPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTL 505
           G+    +  +  + +    +D    ++   I         
Sbjct: 322 GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQA 361

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  136 bits (343), Expect = 3e-34
 Identities = 72/434 (16%), Positives = 141/434 (32%), Gaps = 36/434 (8%)

Query: 243 LLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNF 302
                ++ +    Q   ++ +    +  L+LS N       + ++   +LE L+LSSN  
Sbjct: 12  YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 303 SGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATS 362
              L  + LS   +L  L L++N++Q         ++  L+  NN+ S ++         
Sbjct: 71  YETLDLESLS---TLRTLDLNNNYVQ---ELLVGPSIETLHAANNNIS-RVSCSR--GQG 121

Query: 363 LLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF--NLSSLRRLYMHMNAF 420
              + L+NN +        G  S +Q+LD+  N++     +    +  +L  L +  N  
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 421 NGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLS 480
              + G +  +  L  LDL  N+ +  +       + +  + LR N+L   I   L    
Sbjct: 182 Y-DVKGQVVFAK-LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 481 LLNILDLSYNKFN-GPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELS 539
            L   DL  N F+ G +   F+               L    +   T     +       
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

Query: 540 EVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRAL 599
           ++   +       +  + +K +    G                T  +  E  + +  R +
Sbjct: 298 DLPAPF----ADRLIALKRKEHALLSGQ------------GSETERLECERENQARQREI 341

Query: 600 NLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIP---PQLTELNFLSNFNVSYNHLSG 656
           +         I Q     +   +L+     L  Q+        EL+      V    L  
Sbjct: 342 DALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQH 401

Query: 657 PTPNAGQFANFDEQ 670
            T            
Sbjct: 402 ATEEQSPLQLLRAI 415

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 45/384 (11%), Positives = 106/384 (27%), Gaps = 40/384 (10%)

Query: 60  LTVFVNTGICELKKLVELDLSKNNLYG-HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN 118
           +T+  +       ++  LDL  N +   + +   ++   ++ L+L  N +  +++  +  
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-V 189

Query: 119 IKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLR 178
              L+ L L  N                         L  +   EF       +  ++LR
Sbjct: 190 FAKLKTLDLSSNK------------------------LAFMG-PEFQSAA--GVTWISLR 222

Query: 179 NCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPS 238
           N  L  +   L    +L   DL  N             N ++ T+     ++        
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNE 280

Query: 239 SKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEV----RIPSSMSEMKRLES 294
            +  +  +          LP      L  L     +    +     R+        R   
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 295 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGK 352
           +D     +   +  Q      +   L      L  +V         L             
Sbjct: 341 IDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL 399

Query: 353 IQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRR 412
                 ++   L   +        +       + ++  D+ +++ +     +  L  L  
Sbjct: 400 QHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNG 459

Query: 413 LY-MHMNAFNGSIPGALRRSSSLT 435
              + + + N ++   + R  +L 
Sbjct: 460 EADLALASANATLQELVVREQNLA 483

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
            N       + + L   + S   S   ++ L+LS N LS      L+    +E L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 629 DLSGQIPPQLTELNFLSNFNVSYNHLS 655
            L       L  L+ L   +++ N++ 
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 3/107 (2%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
              +  LD S N+L   +  E  S + +  ++L +N L   I ++L   + +E  DL  N
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 629 DLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGN 675
                               V+   +   T    +        + G 
Sbjct: 248 GFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
            + +  L+   N +  D+  ++   ++++ L+LS N L+  +     +   +  + L +N
Sbjct: 168 SDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

Query: 629 DLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNS 676
            L   I   L     L +F++  N     T       N   Q     +
Sbjct: 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 15/74 (20%), Positives = 27/74 (36%)

Query: 586 IPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLS 645
           I     + +  +   ++ + L  ++     +   ++ LDLS N LS      L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 646 NFNVSYNHLSGPTP 659
             N+S N L     
Sbjct: 62  LLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 13/75 (17%), Positives = 26/75 (34%)

Query: 423 SIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLL 482
           +I    +  +   +  + D+    ++         +  L L GN L       L   + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 483 NILDLSYNKFNGPIP 497
            +L+LS N     + 
Sbjct: 61  ELLNLSSNVLYETLD 75

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  140 bits (354), Expect = 9e-36
 Identities = 86/412 (20%), Positives = 158/412 (38%), Gaps = 47/412 (11%)

Query: 96  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-N 154
            H+  +DLS N +    ++  + ++ L++L ++          N+ +  S L + KL  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 155 SLVKIETEEFPGLPEYQLKALNLRNCSLHA--LPSFLLHQL-DLRFIDLSHNKLQGTFPS 211
             +++ET  F GL    L+ L L  C+L    L       L  L  + L  N ++   P+
Sbjct: 90  QFLQLETGAFNGLA--NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 212 WLLQNNTKLDTLYLLNNSLS----GNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPE 267
               N  +   L L  N +      +      KH    + +S                  
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH-FTLLRLSSITL-------------- 192

Query: 268 LLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHL 327
               +++E         +  +   + +LDLS N F   + ++F          SL  ++ 
Sbjct: 193 ---QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 328 QGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGL 387
                    TN      +N  F G       +A+ +   DLS + ++  +   F + + L
Sbjct: 250 YNMGSSFGHTNF--KDPDNFTFKGL------EASGVKTCDLSKSKIFALLKSVFSHFTDL 301

Query: 388 QFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIP-GALRRSSSLTVLDLRDNQFS 445
           + L +++N+++    ++F  L+ L +L +  N   GSI          L VLDL  N   
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR 360

Query: 446 GSIPIWINEFSYLG---ILLLRGNQLKGNIPNQ-LCHLSLLNILDLSYNKFN 493
            ++      F  L     L L  NQLK ++P+     L+ L  + L  N ++
Sbjct: 361 -ALG--DQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  116 bits (293), Expect = 6e-28
 Identities = 79/374 (21%), Positives = 131/374 (35%), Gaps = 66/374 (17%)

Query: 71  LKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNL--QSVIANIKSLEYLSL 127
           L  L+ L L  N     L     + L +++VL L+   L G +   +    + SLE L L
Sbjct: 78  LSSLIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136

Query: 128 DDNN---FEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLH 183
            DNN    + +  F +++      V  L+ N +  I  E+           L L + +L 
Sbjct: 137 RDNNIKKIQPASFFLNMRR---FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193

Query: 184 ALPSFLL---------HQLDLRFIDLSHNKLQGTFPSWL--LQNNTKLDTLYLLNNSLSG 232
            +  + L             +  +DLS N  + +           TK+ +L L N+   G
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253

Query: 233 NFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRL 292
                                         K         L  +G              +
Sbjct: 254 ----------------------SSFGHTNFKDPDNFTFKGLEASG--------------V 277

Query: 293 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFS 350
           ++ DLS +     L +   S    L  L+L+ N +    +  F   T+L  L L+ N   
Sbjct: 278 KTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336

Query: 351 GKIQDGLSKATSLLELDLSNNMLYGQIPH-WFGNLSGLQFLDISENQLSGSVPSSF--NL 407
                       L  LDLS N +   +    F  L  L+ L +  NQL  SVP      L
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRL 394

Query: 408 SSLRRLYMHMNAFN 421
           +SL+++++H N ++
Sbjct: 395 TSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  102 bits (255), Expect = 4e-23
 Identities = 69/379 (18%), Positives = 128/379 (33%), Gaps = 65/379 (17%)

Query: 292 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLNNNH 348
           +  +DLS N+ + EL     S    L FL +        +    F   ++L  L L+ N 
Sbjct: 32  VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 349 FSGKIQDG-LSKATSLLELDLSNNML-YGQIPH-WFGNLSGLQFLDISENQLSGSVPSSF 405
           F  +++ G  +   +L  L L+   L    +   +F  L+ L+ L + +N +    P+SF
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 406 --NLSSLRRLYMHMNAFNGSIPGALRR--SSSLTVLDLRDNQFSGSIPIWINEFSYLGIL 461
             N+     L +  N         L        T+L L                    + 
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT----------------LQ 193

Query: 462 LLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETT 521
            +    L           + +  LDLS N F   +   F                     
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF--------------------- 232

Query: 522 QRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNE 581
                 F+A   + ++   + + Y      G          ++KG   + +   D S ++
Sbjct: 233 ------FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286

Query: 582 LTGDIPSEI-GSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPP---- 636
           +   +   +    +++  L L+ N ++     +   L  +  L+LS N L   I      
Sbjct: 287 IF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRMFE 344

Query: 637 QLTELNFLSNFNVSYNHLS 655
            L +L  L   ++SYNH+ 
Sbjct: 345 NLDKLEVL---DLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 51/247 (20%), Positives = 81/247 (32%), Gaps = 19/247 (7%)

Query: 264 ILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 323
           +   +  ++LS N       +S S ++ L+ L +        +      G  SL  L L 
Sbjct: 28  LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 324 DNHLQG--EVVFPNSTNLCWLYLNNNHF-SGKIQDGL-SKATSLLELDLSNNMLYGQIPH 379
            N         F    NL  L L   +     +        TSL  L L +N +    P 
Sbjct: 88  YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 380 -WFGNLSGLQFLDISENQLSGSVPSSF-----------NLSSLRRLYMHMNAFNGSIPGA 427
            +F N+     LD++ N++                    LSS+    M+         G 
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 428 LRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDL 487
             +++S+T LDL  N F  S+      F  +    ++   L  N  N        N  D 
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRF--FDAIAGTKIQSLILS-NSYNMGSSFGHTNFKDP 264

Query: 488 SYNKFNG 494
               F G
Sbjct: 265 DNFTFKG 271

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.0 bits (213), Expect = 8e-18
 Identities = 57/274 (20%), Positives = 95/274 (34%), Gaps = 42/274 (15%)

Query: 59  PLTVFVNTGICELKKLVELDLSKNNL--------YGHLSPCLS--NLTHIKVLDLSSNQL 108
           P + F+N     +++   LDL+ N +                +   L+ I + D++   L
Sbjct: 146 PASFFLN-----MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200

Query: 109 TGNLQSVIANIKSLEYLSLDDNNFEGS--FSFNSLKNHSKLQVFKLS-----------NS 155
                       S+  L L  N F+ S    F      +K+Q   LS            +
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 156 LVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQGTFPSWLL 214
               +   F GL    +K  +L    + AL   +     DL  + L+ N++         
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAF 319

Query: 215 QNNTKLDTLYLLNNSL----SGNFQ-LPSSKHDLLRIDISHNKFSGQLPGNMGKILPELL 269
              T L  L L  N L    S  F+ L      L  +D+S+N     L       LP L 
Sbjct: 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDK----LEVLDLSYNHIR-ALGDQSFLGLPNLK 374

Query: 270 SLNLSENGFEVRIPSSM-SEMKRLESLDLSSNNF 302
            L L  N  +  +P  +   +  L+ + L +N +
Sbjct: 375 ELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 55/351 (15%), Positives = 111/351 (31%), Gaps = 56/351 (15%)

Query: 316 SLSFLSLSDNHLQ--GEVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNM 372
            ++++ LS N +    E  F    +L +L +        I++      +SL+ L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 373 LYGQIPHWFGNLSGLQFLDISENQLSGSV--PSSF-NLSSLRRLYMHMNAFNGSIP-GAL 428
                   F  L+ L+ L +++  L G+V   + F  L+SL  L +  N      P    
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 429 RRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLS 488
                  VLDL  N+   SI     +            +L       L  ++   +    
Sbjct: 151 LNMRRFHVLDLTFNKVK-SICE--EDLLNFQGKHFTLLRLSSI---TLQDMNEYWLGWEK 204

Query: 489 YNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKAS 548
                    +                  L  +           +   +  ++++    ++
Sbjct: 205 CGNPFKNTSIT----------------TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248

Query: 549 GQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSG 608
                                N  +    +  +   +   +    S ++  +LS + +  
Sbjct: 249 SY-------------------NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289

Query: 609 SIPQSLSNLKMIESLDLSHNDLSGQIPP----QLTELNFLSNFNVSYNHLS 655
            +    S+   +E L L+ N+++ +I       LT L  L   N+S N L 
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKL---NLSQNFLG 336

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  134 bits (339), Expect = 9e-34
 Identities = 97/470 (20%), Positives = 164/470 (34%), Gaps = 90/470 (19%)

Query: 68  ICELKKLVELDLSKNNLYGHLSPCLSNL-------------THIKVLDLSSNQLTGNLQS 114
              +K   E   + +    +  P                       L+L++  L+    S
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS----S 85

Query: 115 VIANIKSLEYLSLDDNNFE--------------GSFSFNSLKNH-SKLQVFKLS-NSLVK 158
           +      LE L    N+                 + +  +L +    L+   +S N L K
Sbjct: 86  LPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK 145

Query: 159 IETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNT 218
           +   E        LK +++ N SL  LP        L FI   +N+L+   P   LQN  
Sbjct: 146 L--PELQNSS--FLKIIDVDNNSLKKLPDLPPS---LEFIAAGNNQLE-ELPE--LQNLP 195

Query: 219 KLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGF 278
            L  +Y  NNSL    +LP     L  I   +N    +LP  +   LP L ++    N  
Sbjct: 196 FLTAIYADNNSLK---KLPDLPLSLESIVAGNNILE-ELP-ELQN-LPFLTTIYADNN-- 247

Query: 279 EVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTN 338
              + +       LE+L++  N  + +LP        SL+FL +S+N   G    P   N
Sbjct: 248 --LLKTLPDLPPSLEALNVRDNYLT-DLPELPQ----SLTFLDVSENIFSGLSELP--PN 298

Query: 339 LCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLS 398
           L +L  ++N    +I+       SL EL++SNN L  ++P        L+ L  S N L+
Sbjct: 299 LYYLNASSN----EIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA 350

Query: 399 GSVPSSFNLSSLRRLYMHMNAFNG--SIPGALRR-------------SSSLTVLDLRDNQ 443
             VP      +L++L++  N       IP ++                 +L  L +  N 
Sbjct: 351 -EVPEL--PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407

Query: 444 FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFN 493
                P        +  L +   ++             L      ++  +
Sbjct: 408 LR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  129 bits (327), Expect = 3e-32
 Identities = 83/433 (19%), Positives = 140/433 (32%), Gaps = 64/433 (14%)

Query: 62  VFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKS 121
           +F+N        L E     +NL   +     N+        + ++   N        + 
Sbjct: 1   MFINPRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE 59

Query: 122 LEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNC 180
           +    L D                +    +L+   L        P LP   L++L     
Sbjct: 60  MAVSRLRDC------------LDRQAHELELNNLGL-----SSLPELPP-HLESLVASCN 101

Query: 181 SLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSK 240
           SL  LP        L   + +   L    P         L+ L + NN L    +L +S 
Sbjct: 102 SLTELPELPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLEKLPELQNSS 153

Query: 241 HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSN 300
             L  ID+ +N    +LP       P L  +    N  E      +  +  L ++   +N
Sbjct: 154 F-LKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNN 205

Query: 301 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKA 360
           +   +LP        SL  +   +N L+      N   L  +Y +NN     + D     
Sbjct: 206 SLK-KLP----DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPP-- 257

Query: 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAF 420
            SL  L++ +N L   +P    +L+ L   +   + LS          +L  L    N  
Sbjct: 258 -SLEALNVRDNYL-TDLPELPQSLTFLDVSENIFSGLSEL------PPNLYYLNASSNEI 309

Query: 421 NGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLS 480
             S+        SL  L++ +N+    +P        L  L+   N L   +P    +L 
Sbjct: 310 R-SLCDLP---PSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLA-EVPELPQNLK 360

Query: 481 LLNILDLSYNKFN 493
               L + YN   
Sbjct: 361 ---QLHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  119 bits (301), Expect = 7e-29
 Identities = 95/481 (19%), Positives = 155/481 (32%), Gaps = 113/481 (23%)

Query: 175 LNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF 234
           +N RN S   L   L H  +L  + +    +                  Y   +    N 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENV------------KSKTEYYNAWSEWERN- 49

Query: 235 QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLES 294
             P    +   + +S  +           +  +   L L+  G    +P        LES
Sbjct: 50  -APPGNGEQREMAVSRLRDC---------LDRQAHELELNNLGLS-SLPELPPH---LES 95

Query: 295 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQ 354
           L  S N+ + ELP +      SL   + +   L           L +L ++NN    K+ 
Sbjct: 96  LVASCNSLT-ELP-ELPQSLKSLLVDNNNLKALSD-----LPPLLEYLGVSNNQLE-KLP 147

Query: 355 DGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLY 414
           + L  ++ L  +D+ NN     +         L+F+    NQL   +P   NL  L  +Y
Sbjct: 148 E-LQNSSFLKIIDVDNN----SLKKLPDLPPSLEFIAAGNNQLE-ELPELQNLPFLTAIY 201

Query: 415 MHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPN 474
              N+    +P       SL  +   +N     +P  +    +L  +    N LK  +P+
Sbjct: 202 ADNNSLK-KLPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPD 254

Query: 475 QLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNS 534
               L  LN+ D         +P    ++T                        +   N 
Sbjct: 255 LPPSLEALNVRDNYLTD----LPELPQSLT----------------------FLDVSENI 288

Query: 535 TLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLS 594
              LSE                           +   +  L+ S NE+   +     SL 
Sbjct: 289 FSGLSE---------------------------LPPNLYYLNASSNEIR-SLCDLPPSLE 320

Query: 595 EIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHL 654
           E   LN+S+N L   +P     L   E L  S N L+ ++P     L  L   +V YN L
Sbjct: 321 E---LNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNLKQL---HVEYNPL 369

Query: 655 S 655
            
Sbjct: 370 R 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.3 bits (183), Expect = 5e-14
 Identities = 44/298 (14%), Positives = 84/298 (28%), Gaps = 79/298 (26%)

Query: 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNA 419
           T L E    ++ L  ++P    N+        + ++   + P        +    +    
Sbjct: 11  TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC- 68

Query: 420 FNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHL 479
                            L+L +   S S+P       +L  L+   N L   +P     L
Sbjct: 69  ----------LDRQAHELELNNLGLS-SLP---ELPPHLESLVASCNSLT-ELPELPQSL 113

Query: 480 SLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELS 539
             L + + +    +   P       L  LG                       N   +L 
Sbjct: 114 KSLLVDNNNLKALSDLPP------LLEYLG--------------------VSNNQLEKLP 147

Query: 540 EVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRAL 599
           E+++                          +++  +D   N L   +P    SL     +
Sbjct: 148 ELQN-------------------------SSFLKIIDVDNNSLK-KLPDLPPSL---EFI 178

Query: 600 NLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGP 657
              +N L   +P  L NL  + ++   +N L  ++P     L  +       N L   
Sbjct: 179 AAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNILEEL 230

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 18/105 (17%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSE-------------IRALNLSHNFLSGSIPQSLS 615
           +   T    + +E   + P   G   E                L L++  LS S+P+   
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPP 91

Query: 616 NLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPN 660
           +L   ESL  S N L+ ++P     L  L   N +   LS   P 
Sbjct: 92  HL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL 132

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  127 bits (321), Expect = 2e-32
 Identities = 58/357 (16%), Positives = 109/357 (30%), Gaps = 65/357 (18%)

Query: 94  NLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS 153
           N    K+  ++ + L   L S+  +  +++ L L  N                       
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP---------------------- 45

Query: 154 NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLD-LRFIDLSHNKLQGTFPSW 212
             L +I   +       +L+ LNL +  L+         L  LR +DL++N +Q      
Sbjct: 46  --LSQISAADLAPFT--KLELLNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQ------ 93

Query: 213 LLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLN 272
            L     ++TL+  NN++S   ++  S                              ++ 
Sbjct: 94  ELLVGPSIETLHAANNNIS---RVSCS------------------------RGQGKKNIY 126

Query: 273 LSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV 332
           L+ N   +          R++ LDL  N        +  +   +L  L+L  N +     
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186

Query: 333 FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDI 392
                 L  L L++N  +  +      A  +  + L NN L   I         L+  D+
Sbjct: 187 QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDL 244

Query: 393 SENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449
             N         F   + R   +        + G      ++  L          +P
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLP 300

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (311), Expect = 3e-31
 Identities = 52/283 (18%), Positives = 99/283 (34%), Gaps = 16/283 (5%)

Query: 213 LLQNNTKLDTLYLLNNSLSG-NFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSL 271
           + QN  +     + ++SL      L  S  ++  +D+S N  S Q+         +L  L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELL 63

Query: 272 NLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV 331
           NLS N   +     +  +  L +LDL++N          L    S+  L  ++N++   V
Sbjct: 64  NLSSN--VLYETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS-RV 114

Query: 332 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG-QIPHWFGNLSGLQFL 390
                     +YL NN  +          + +  LDL  N +          +   L+ L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 391 DISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPI 450
           ++  N +   V      + L+ L +  N     +    + ++ +T + LR+N+    I  
Sbjct: 175 NLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 451 WINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFN 493
            +     L    LRGN                 +  ++     
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.7 bits (231), Expect = 1e-20
 Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 10/174 (5%)

Query: 332 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLD 391
           +  N        + ++     +      A ++ ELDLS N L           + L+ L+
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 392 ISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIW 451
           +S N L        +LS+LR L ++ N         L    S+  L   +N  S  +   
Sbjct: 65  LSSNVLY-ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS-- 115

Query: 452 INEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG-PIPVCFANVT 504
            +       + L  N++           S +  LDL  N+ +        A+  
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 45/262 (17%), Positives = 87/262 (33%), Gaps = 27/262 (10%)

Query: 68  ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI-KSLEYLS 126
           +  L  L  LDL+ N +       L     I+ L  ++N ++     V  +  +  + + 
Sbjct: 76  LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS----RVSCSRGQGKKNIY 126

Query: 127 LDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
           L +N              S++Q   L  N +  +   E     +  L+ LNL+   ++ +
Sbjct: 127 LANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDV 184

Query: 186 PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLS----GNFQLPSSKH 241
              ++    L+ +DLS NKL    P    Q+   +  + L NN L           +   
Sbjct: 185 KGQVVFA-KLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEKALRFSQN--- 238

Query: 242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNN 301
            L   D+  N F      +       + ++         ++     E   + +L      
Sbjct: 239 -LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAY 294

Query: 302 FSGELPRQFLSGCFSLSFLSLS 323
              +LP  F     +L      
Sbjct: 295 CCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 39/239 (16%), Positives = 75/239 (31%), Gaps = 16/239 (6%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
             +     +  L  + NN+   +S   S     K + L++N++T            ++YL
Sbjct: 93  QELLVGPSIETLHAANNNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHA 184
            L  N  +         +   L+   L  N +  ++ +        +LK L+L +  L  
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FA--KLKTLDLSSNKLAF 205

Query: 185 LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 244
           +         + +I L +NKL        L+ +  L+   L  N       L        
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV-LIEK-ALRFSQNLEHFDLRGNGFHCG-TLRDFFSKNQ 262

Query: 245 RIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFS 303
           R+     +   +L G   +         L   G             RL  + L  ++  
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECT---VPTLGHYGAYCCEDLPAPFADRL--IALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 30/216 (13%), Positives = 64/216 (29%), Gaps = 32/216 (14%)

Query: 60  LTVFVNTGICELKKLVELDLSKNNLYG-HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN 118
           +T+  +       ++  LDL  N +   + +   ++   ++ L+L  N +  +++  +  
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-V 189

Query: 119 IKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLR 178
              L+ L L  N                         L  +   EF       +  ++LR
Sbjct: 190 FAKLKTLDLSSNK------------------------LAFMG-PEFQSAA--GVTWISLR 222

Query: 179 NCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPS 238
           N  L  +   L    +L   DL  N             N ++ T+     ++        
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNE 280

Query: 239 SKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLS 274
            +  +  +          LP      L  L   +  
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
            N       + + L   + S   S   ++ L+LS N LS      L+    +E L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 629 DLSGQIPPQLTELNFLSNFNVSYNHLS 655
            L       L  L+ L   +++ N++ 
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 3/107 (2%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
              +  LD S N+L   +  E  S + +  ++L +N L   I ++L   + +E  DL  N
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 629 DLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGN 675
                   +           V+   +   T    +        + G 
Sbjct: 248 GFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
            + +  L+   N +  D+  ++   ++++ L+LS N L+  +     +   +  + L +N
Sbjct: 168 SDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

Query: 629 DLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNS 676
            L   I   L     L +F++  N     T       N   Q     +
Sbjct: 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 15/74 (20%), Positives = 27/74 (36%)

Query: 586 IPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLS 645
           I     + +  +   ++ + L  ++     +   ++ LDLS N LS      L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 646 NFNVSYNHLSGPTP 659
             N+S N L     
Sbjct: 62  LLNLSSNVLYETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 567 DILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSG-SIPQSLSNLKMIESLDL 625
                   +  + N++T     + G  S ++ L+L  N +   +  +  ++   +E L+L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 626 SHNDLSGQIPPQLTELNFLSNFNVSYNHLS 655
            +N +   +  Q+     L   ++S N L+
Sbjct: 177 QYNFIY-DVKGQVV-FAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQI 634
           L+ S N L      ++ SLS +R L+L++N++       L     IE+L  ++N++S ++
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RV 114

Query: 635 PPQLTELNFLSNFNVSYNHLSGPTPNA 661
                      N  ++ N ++      
Sbjct: 115 SCSR--GQGKKNIYLANNKITMLRDLD 139

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 13/75 (17%), Positives = 26/75 (34%)

Query: 423 SIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLL 482
           +I    +  +   +  + D+    ++         +  L L GN L       L   + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 483 NILDLSYNKFNGPIP 497
            +L+LS N     + 
Sbjct: 61  ELLNLSSNVLYETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS--- 631
           L  + N ++  +          + + L++N ++            ++ LDL  N++    
Sbjct: 104 LHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 632 -GQIPPQLTELNFLSNFNVSYNHLS 655
             ++      L  L   N+ YN + 
Sbjct: 161 FAELAASSDTLEHL---NLQYNFIY 182

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  125 bits (317), Expect = 7e-32
 Identities = 62/387 (16%), Positives = 116/387 (29%), Gaps = 73/387 (18%)

Query: 94  NLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS 153
           + +  + L    +     L+     +   +     D N   S       N +  Q+   +
Sbjct: 10  HSSGRENLYFQGST---ALRPYHDVLSQWQRHYNADRNRWHSAW--RQANSNNPQIETRT 64

Query: 154 NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWL 213
              +K   +      +    AL LR+  L   P        L+ + +    L        
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM------- 117

Query: 214 LQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNL 273
                                                     +LP  M +    L +L L
Sbjct: 118 ------------------------------------------ELPDTMQQ-FAGLETLTL 134

Query: 274 SENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVF 333
           + N     +P+S++ + RL  L + +     ELP    S   S     L           
Sbjct: 135 ARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL----------- 182

Query: 334 PNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDIS 393
               NL  L L        +   ++   +L  L + N+ L   +     +L  L+ LD+ 
Sbjct: 183 ---VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLR 237

Query: 394 ENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI 452
                 + P  F   + L+RL +   +   ++P  + R + L  LDLR       +P  I
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 453 NEFSYLGILLLRGNQLKGNIPNQLCHL 479
            +     I+L+  +       ++    
Sbjct: 298 AQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  116 bits (294), Expect = 8e-29
 Identities = 50/324 (15%), Positives = 103/324 (31%), Gaps = 28/324 (8%)

Query: 182 LHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKH 241
           + +      H      +    +     +   L    ++    Y  + +   +    ++ +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSN 56

Query: 242 DLLRIDISHNKFSGQLPGNMGKI-LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSN 300
           +      +           +     P  ++L L       + P     +  L+ + + + 
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 301 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS----TNLCWLYL-NNNHF------ 349
               ELP   +     L  L+L+ N L+     P S      L  L +            
Sbjct: 115 GLM-ELPDT-MQQFAGLETLTLARNPLR---ALPASIASLNRLRELSIRACPELTELPEP 169

Query: 350 --SGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-N 406
             S           +L  L L    +   +P    NL  L+ L I  + LS ++  +  +
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH 227

Query: 407 LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGN 466
           L  L  L +       + P      + L  L L+D     ++P+ I+  + L  L LRG 
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 467 QLKGNIPNQLCHLSLLNILDLSYN 490
                +P+ +  L    I+ +  +
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 97.7 bits (244), Expect = 3e-22
 Identities = 40/251 (15%), Positives = 80/251 (31%), Gaps = 29/251 (11%)

Query: 268 LLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHL 327
             +L    +         +S+ +R  + D +  + +            + +   +     
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA--------NSNNPQIETRTG 65

Query: 328 QGEVVFPNS------TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWF 381
           +      +            L L +     +  D   + + L  + +    L  ++P   
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTM 123

Query: 382 GNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNA---------FNGSIPGALRRS 431
              +GL+ L ++ N L  ++P+S  +L+ LR L +              +    G  +  
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 432 SSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491
            +L  L L       S+P  I     L  L +R + L   +   + HL  L  LDL    
Sbjct: 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCT 240

Query: 492 FNGPIPVCFAN 502
                P  F  
Sbjct: 241 ALRNYPPIFGG 251

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 43/321 (13%), Positives = 85/321 (26%), Gaps = 44/321 (13%)

Query: 335 NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISE 394
           +S+    LY   +       D LS+       D +      +      N +  Q    + 
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 395 NQLSGSVPSSFNLSS--LRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI 452
             L  +     + +      L +         P    R S L  + +        +P  +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 453 NEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAA 512
            +F+ L  L L  N L+  +P  +  L+ L  L +        +P   A+       Q  
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 513 GSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYM 572
            +                 +     L              I  +               +
Sbjct: 183 VNL----------QSLRLEWTGIRSLPA-----------SIANLQN-------------L 208

Query: 573 TGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG 632
             L    + L+  +   I  L ++  L+L       + P        ++ L L       
Sbjct: 209 KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 633 QIPPQLTELNFLSNFNVSYNH 653
            +P  +  L  L   ++    
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.2 bits (131), Expect = 7e-08
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 569 LNYMTGLDFS-CNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSH 627
           L  +  LD   C  L    P   G  + ++ L L       ++P  +  L  +E LDL  
Sbjct: 228 LPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 628 NDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPN 660
                ++P  + +L       V  +  +    +
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 5/89 (5%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEI--RALNLSHNFLSGSIPQSLSNLKMIESLDLS 626
            N       +   L       +   ++    AL L    L    P     L  ++ + + 
Sbjct: 55  SNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTID 112

Query: 627 HNDLSGQIPPQLTELNFLSNFNVSYNHLS 655
              L  ++P  + +   L    ++ N L 
Sbjct: 113 AAGLM-ELPDTMQQFAGLETLTLARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 11/90 (12%)

Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMI---------ESLDL 625
           L  + N L   +P+ I SL+ +R L++        +P+ L++             +SL L
Sbjct: 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 626 SHNDLSGQIPPQLTELNFLSNFNVSYNHLS 655
               +   +P  +  L  L +  +  + LS
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 578 SCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQ 637
            C+ L   +P +I  L+++  L+L        +P  ++ L     + +  +  +     +
Sbjct: 262 DCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

Query: 638 LTEL 641
               
Sbjct: 321 PVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 13/63 (20%), Positives = 23/63 (36%)

Query: 68  ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 127
                 L  L L   +    L   +  LT ++ LDL        L S+IA + +   + +
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 128 DDN 130
             +
Sbjct: 309 PPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 22/139 (15%), Positives = 37/139 (26%), Gaps = 28/139 (20%)

Query: 378 PHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSI------------- 424
            H   + SG + L    +           LS  +R Y        S              
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDV--LSQWQRHYNADRNRWHSAWRQANSNNPQIET 62

Query: 425 ---------PGALRRSSS--LTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIP 473
                       L  ++      L+LR        P      S+L  + +    L   +P
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 474 NQLCHLSLLNILDLSYNKF 492
           + +   + L  L L+ N  
Sbjct: 121 DTMQQFAGLETLTLARNPL 139

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  129 bits (326), Expect = 2e-31
 Identities = 73/377 (19%), Positives = 125/377 (33%), Gaps = 51/377 (13%)

Query: 68  ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 127
            C       L++ ++ L   L  CL    HI  L +  N LT    S+ A    L  L +
Sbjct: 36  ACLNNGNAVLNVGESGL-TTLPDCL--PAHITTLVIPDNNLT----SLPALPPELRTLEV 88

Query: 128 DDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPS 187
             N    S          +L +F              P LP   L  L +    L +LP 
Sbjct: 89  SGNQLT-SLP-VLPPGLLELSIFSNPL-------THLPALPS-GLCKLWIFGNQLTSLPV 138

Query: 188 FLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRID 247
                  L+ + +S N+L  + P+      ++L  L+  NN L+    LP     L  + 
Sbjct: 139 LPPG---LQELSVSDNQLA-SLPALP----SELCKLWAYNNQLT---SLPMLPSGLQELS 187

Query: 248 ISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELP 307
           +S N+ +  LP    +    L  L    N     +P+  S    L+ L +S N  +  LP
Sbjct: 188 VSDNQLA-SLPTLPSE----LYKLWAYNNRLT-SLPALPS---GLKELIVSGNRLT-SLP 237

Query: 308 RQFLSGCFSLSFLSLSDNHLQGEVVFPNS-TNLCWLYLNNNHFSGKIQDGLSKATSLLEL 366
                    L  L +S N L      P   + L  L +  N  + ++ + L   +S   +
Sbjct: 238 ----VLPSELKELMVSGNRLTS---LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289

Query: 367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPG 426
           +L  N L  +       ++           +     +  +     R      A +  +P 
Sbjct: 290 NLEGNPLSERTLQALREIT---SAPGYSGPIIRFDMAGASAPRETRALHLAAA-DWLVPA 345

Query: 427 ALRRSSSLTVLDLRDNQ 443
                +      +   +
Sbjct: 346 REGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  123 bits (310), Expect = 2e-29
 Identities = 77/342 (22%), Positives = 120/342 (35%), Gaps = 44/342 (12%)

Query: 171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSL 230
               LN+    L  LP  L   +    + +  N L  + P+       +L TL +  N L
Sbjct: 41  GNAVLNVGESGLTTLPDCLPAHI--TTLVIPDNNLT-SLPALP----PELRTLEVSGNQL 93

Query: 231 SGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMK 290
           +    LP     LL + I  N  +  LP     +   L  L +  N     +P       
Sbjct: 94  T---SLPVLPPGLLELSIFSNPLT-HLP----ALPSGLCKLWIFGNQLT-SLPVLPPG-- 142

Query: 291 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS-TNLCWLYLNNNHF 349
            L+ L +S N  +  LP         L  L   +N L      P   + L  L +++N  
Sbjct: 143 -LQELSVSDNQLA-SLPALP----SELCKLWAYNNQLT---SLPMLPSGLQELSVSDNQL 193

Query: 350 SGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSS 409
           +  +    S    L +L   NN L   +P      SGL+ L +S N+L+ S+P     S 
Sbjct: 194 A-SLPTLPS---ELYKLWAYNNRLT-SLP---ALPSGLKELIVSGNRLT-SLPVL--PSE 242

Query: 410 LRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLK 469
           L+ L +  N    S+P      S L  L +  NQ +  +P  +   S    + L GN L 
Sbjct: 243 LKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

Query: 470 GNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQA 511
                 L  ++          +F+              L  A
Sbjct: 298 ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  118 bits (296), Expect = 9e-28
 Identities = 80/414 (19%), Positives = 133/414 (32%), Gaps = 78/414 (18%)

Query: 76  ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEG 134
           E    +  +   +  CL       VL++  + LT    ++   +   +  L + DNN   
Sbjct: 22  EESRGRAAVVQKMRACL--NNGNAVLNVGESGLT----TLPDCLPAHITTLVIPDNNLT- 74

Query: 135 SFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLD 194
                                         P LP  +L+ L +    L +LP      L+
Sbjct: 75  ----------------------------SLPALPP-ELRTLEVSGNQLTSLPVLPPGLLE 105

Query: 195 LRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFS 254
           L         L    P+      + L  L++  N L+    LP     L  + +S N+ +
Sbjct: 106 LSIFSNPLTHL----PALP----SGLCKLWIFGNQLT---SLPVLPPGLQELSVSDNQLA 154

Query: 255 GQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGC 314
             LP    +    L  L    N     +P   S    L+ L +S N  +  LP       
Sbjct: 155 -SLPALPSE----LCKLWAYNNQLT-SLPMLPS---GLQELSVSDNQLA-SLPTLP---- 200

Query: 315 FSLSFLSLSDNHLQGEVVFPNS-TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML 373
             L  L   +N L      P   + L  L ++ N  +  +       + L EL +S N L
Sbjct: 201 SELYKLWAYNNRLT---SLPALPSGLKELIVSGNRLTS-LPVLP---SELKELMVSGNRL 253

Query: 374 YGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSS 432
              +P        L  L +  NQL+  +P S  +LSS   + +  N  +     ALR  +
Sbjct: 254 -TSLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308

Query: 433 SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILD 486
           S         +F  +      E   L   L   + L      +       ++  
Sbjct: 309 SAPGYSGPIIRFDMAGASAPRETRAL--HLAAADWLVPAREGEPAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (267), Expect = 4e-24
 Identities = 62/318 (19%), Positives = 97/318 (30%), Gaps = 48/318 (15%)

Query: 70  ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
              +L  L++S N L   L      L  + +       L        A    L  L +  
Sbjct: 79  LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFG 130

Query: 130 NNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFL 189
           N    S          +L V    N L        P LP  +L  L   N  L +LP   
Sbjct: 131 NQLT-SLP-VLPPGLQELSV--SDNQL-----ASLPALPS-ELCKLWAYNNQLTSLPMLP 180

Query: 190 LHQLDLRFIDLSHNKLQGTFPS--------WLLQNN--------TKLDTLYLLNNSLSGN 233
                L+ + +S N+L  + P+        W   N         + L  L +  N L+  
Sbjct: 181 SG---LQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-- 234

Query: 234 FQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLE 293
             LP    +L  + +S N+ +  LP         LLSL++  N    R+P S+  +    
Sbjct: 235 -SLPVLPSELKELMVSGNRLT-SLPMLPSG----LLSLSVYRNQLT-RLPESLIHLSSET 287

Query: 294 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKI 353
           +++L  N  S E   Q L    S    S                         +      
Sbjct: 288 TVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

Query: 354 QDGLSKATSLLELDLSNN 371
           +   + A         +N
Sbjct: 347 EGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 84.9 bits (210), Expect = 3e-17
 Identities = 59/295 (20%), Positives = 96/295 (32%), Gaps = 80/295 (27%)

Query: 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAF 420
                L++  + L   +P        +  L I +N L+ S+P+      LR L +  N  
Sbjct: 40  NGNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNLT-SLPAL--PPELRTLEVSGNQL 93

Query: 421 NGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLS 480
             S+P        L++                   S L  L + GNQL  ++P     L 
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLPVLPPGLQ 144

Query: 481 LLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSE 540
               L +S N+    +P   + +                       +  AY N    L  
Sbjct: 145 ---ELSVSDNQLAS-LPALPSEL----------------------CKLWAYNNQLTSLPM 178

Query: 541 VKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALN 600
           +                            + +  L  S N+L   +P+    L +   L 
Sbjct: 179 L---------------------------PSGLQELSVSDNQLA-SLPTLPSELYK---LW 207

Query: 601 LSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLS 655
             +N L+ S+P   S LK    L +S N L+  +P   +EL  L    VS N L+
Sbjct: 208 AYNNRLT-SLPALPSGLK---ELIVSGNRLT-SLPVLPSELKEL---MVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 41/226 (18%), Positives = 79/226 (34%), Gaps = 69/226 (30%)

Query: 430 RSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSY 489
            ++   VL++ ++  + ++P  +   +++  L++  N L  ++P     L     L++S 
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELR---TLEVSG 90

Query: 490 NKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASG 549
           N+    +PV    +                       E   + N    L           
Sbjct: 91  NQLTS-LPVLPPGLL----------------------ELSIFSNPLTHLPA--------- 118

Query: 550 QRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGS 609
                             + + +  L    N+LT  +P     L E   L++S N L+ S
Sbjct: 119 ------------------LPSGLCKLWIFGNQLT-SLPVLPPGLQE---LSVSDNQLA-S 155

Query: 610 IPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLS 655
           +P   S L     L   +N L+  +P   + L  L   +VS N L+
Sbjct: 156 LPALPSELC---KLWAYNNQLT-SLPMLPSGLQEL---SVSDNQLA 194

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQI 634
           L  S N LT  +P     L   + L +S N L+ S+P   S L    SL +  N L+ ++
Sbjct: 226 LIVSGNRLT-SLPVLPSEL---KELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RL 276

Query: 635 PPQLTELNFLSNFNVSYNHLSGPTPNAGQ 663
           P  L  L+  +  N+  N LS  T  A +
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQALR 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  123 bits (311), Expect = 5e-31
 Identities = 63/357 (17%), Positives = 113/357 (31%), Gaps = 70/357 (19%)

Query: 97  HIKVLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-N 154
           H++V+  S   L      V  ++      L L +N           KN   L    L  N
Sbjct: 32  HLRVVQCSDLGLE----KVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINN 86

Query: 155 SLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLL 214
            + KI    F  L   +L+ L L    L  LP  +   L  + + +  N++       + 
Sbjct: 87  KISKISPGAFAPLV--KLERLYLSKNQLKELPEKMPKTL--QELRVHENEIT-KVRKSVF 141

Query: 215 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLS 274
               ++  + L  N L                 I +  F G         + +L  + ++
Sbjct: 142 NGLNQMIVVELGTNPLK-------------SSGIENGAFQG---------MKKLSYIRIA 179

Query: 275 ENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFP 334
           +      IP  +     L  L L  N  + ++    L G  +L+ L LS N +       
Sbjct: 180 DTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISA----- 230

Query: 335 NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISE 394
                    ++N   +            L EL L+NN L  ++P    +   +Q + +  
Sbjct: 231 ---------VDNGSLAN--------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

Query: 395 NQLSGSVPSSF-------NLSSLRRLYMHMNAFNGSI--PGALRRSSSLTVLDLRDN 442
           N +S    + F         +S   + +  N        P   R       + L + 
Sbjct: 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  122 bits (308), Expect = 1e-30
 Identities = 72/334 (21%), Positives = 125/334 (37%), Gaps = 48/334 (14%)

Query: 171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSL 230
            L+ +   +  L  +P  L    D   +DL +NK+         +N   L TL L+NN +
Sbjct: 32  HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 231 SGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMK 290
           S                IS   F+          L +L  L LS+N  +  +P  M   K
Sbjct: 89  S---------------KISPGAFAP---------LVKLERLYLSKNQLK-ELPEKMP--K 121

Query: 291 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV----FPNSTNLCWLYLNN 346
            L+ L +  N  + ++ +   +G   +  + L  N L+   +    F     L ++ + +
Sbjct: 122 TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180

Query: 347 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF- 405
            + +  I  GL    SL EL L  N +          L+ L  L +S N +S     S  
Sbjct: 181 TNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

Query: 406 NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSG------SIPIWINEFSYLG 459
           N   LR L+++ N     +PG L     + V+ L +N  S         P +  + +   
Sbjct: 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 460 ILLLRGNQLKGNI--PNQLCHLSLLNILDLSYNK 491
            + L  N ++     P+    + +   + L   K
Sbjct: 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  111 bits (280), Expect = 5e-27
 Identities = 60/291 (20%), Positives = 109/291 (37%), Gaps = 50/291 (17%)

Query: 71  LKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANI-KSLEYLSLD 128
           LK L  L L  N +   +SP   + L  ++ L LS NQL      +   + K+L+ L + 
Sbjct: 75  LKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQLK----ELPEKMPKTLQELRVH 129

Query: 129 DNNFEGSFSFNSLKNHSKLQVFKLSN---SLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
           +N        +     +++ V +L         IE   F G+   +L  + + + ++  +
Sbjct: 130 ENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK--KLSYIRIADTNITTI 186

Query: 186 PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 245
           P  L     L  + L  NK+     +  L+    L  L L  NS+S              
Sbjct: 187 PQGLPPS--LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-------------- 229

Query: 246 IDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFS-- 303
             + +   +           P L  L+L+ N    ++P  +++ K ++ + L +NN S  
Sbjct: 230 -AVDNGSLAN---------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278

Query: 304 ---GELPRQFLSGCFSLSFLSLSDNHLQGEVV----FPNSTNLCWLYLNNN 347
                 P  + +   S S +SL  N +Q   +    F        + L N 
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  108 bits (272), Expect = 6e-26
 Identities = 51/259 (19%), Positives = 99/259 (38%), Gaps = 21/259 (8%)

Query: 242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNN 301
            L  +  S      ++P +   + P+   L+L  N            +K L +L L +N 
Sbjct: 32  HLRVVQCSDLGLE-KVPKD---LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 302 FSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNST--NLCWLYLNNNHFSGKIQDG-LS 358
            S ++     +    L  L LS N L+     P      L  L ++ N  + K++    +
Sbjct: 88  IS-KISPGAFAPLVKLERLYLSKNQLK---ELPEKMPKTLQELRVHENEIT-KVRKSVFN 142

Query: 359 KATSLLELDLSNNMLYGQI--PHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMH 416
               ++ ++L  N L         F  +  L ++ I++  ++ ++P      SL  L++ 
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL-PPSLTELHLD 200

Query: 417 MNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP--IWINEFSYLGILLLRGNQLKGNIPN 474
            N        +L+  ++L  L L  N  S ++      N   +L  L L  N+L   +P 
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLAN-TPHLRELHLNNNKLV-KVPG 257

Query: 475 QLCHLSLLNILDLSYNKFN 493
            L     + ++ L  N  +
Sbjct: 258 GLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 36/216 (16%), Positives = 71/216 (32%), Gaps = 38/216 (17%)

Query: 70  ELKKLVELDLSKNNLY-GHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANI-KSLEYLS 126
            L +++ ++L  N L    +       +  +  + ++   +T    ++   +  SL  L 
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT----TIPQGLPPSLTELH 198

Query: 127 LDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
           LD N         SLK  + L    LS NS+  ++       P   L+ L+L N  L  +
Sbjct: 199 LDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP--HLRELHLNNNKLVKV 255

Query: 186 PSFLLHQLDLRFIDLSHNKLQ----GTF-PSWLLQNNTKLDTLYLLNNSLSGNFQLPSSK 240
           P  L     ++ + L +N +       F P            + L +N +          
Sbjct: 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ--------- 306

Query: 241 HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSEN 276
                 +I  + F           +    ++ L   
Sbjct: 307 ----YWEIQPSTFRC---------VYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 575 LDFSCNELTGDIPSEI-GSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQ 633
           L    N++T  + +     L+ +  L LS N +S     SL+N   +  L L++N L  +
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 634 IPPQLTELNFLSNFNVSYNHLS 655
           +P  L +  ++    +  N++S
Sbjct: 255 VPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 567 DILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLS 626
           D+      LD   N++T     +  +L  +  L L +N +S   P + + L  +E L LS
Sbjct: 49  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 627 HNDLS---GQIPPQLTELNFLSN 646
            N L     ++P  L EL    N
Sbjct: 109 KNQLKELPEKMPKTLQELRVHEN 131

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  126 bits (319), Expect = 5e-31
 Identities = 86/433 (19%), Positives = 142/433 (32%), Gaps = 29/433 (6%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-NLQSVIANIKSLEYLSLDD 129
            ++L  LDLS N L         NL H   LDLS N      +     N+  L++L L  
Sbjct: 68  NQELEYLDLSHNKLVKISCHPTVNLKH---LDLSFNAFDALPICKEFGNMSQLKFLGLST 124

Query: 130 NNF-EGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSF 188
            +  + S    +  N SK+ +        K + E         L  +   N   H +   
Sbjct: 125 THLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV 184

Query: 189 LLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDI 248
            +        +L  + ++                 Y L+           S   L  I+ 
Sbjct: 185 SV----KTVANLELSNIKCVLEDNKCS--------YFLSILAKLQTNPKLSNLTLNNIET 232

Query: 249 SHNKFSGQLPGNMGKILPEL--LSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGEL 306
           + N F   L       +      ++ L           S + +K L    + S+ F    
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FP 291

Query: 307 PRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLL 364
                    +++  + + +  +    +     +    L  +NN  +  + +     T L 
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351

Query: 365 ELDLSNNML--YGQIPHWFGNLSGLQFLDISENQLSGSVPSSF--NLSSLRRLYMHMNAF 420
            L L  N L    +I      +  LQ LDIS+N +S            SL  L M  N  
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411

Query: 421 NGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLS 480
             +I   L     + VLDL  N+   SIP  + +   L  L +  NQLK         L+
Sbjct: 412 TDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT 468

Query: 481 LLNILDLSYNKFN 493
            L  + L  N ++
Sbjct: 469 SLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  125 bits (316), Expect = 2e-30
 Identities = 65/447 (14%), Positives = 136/447 (30%), Gaps = 55/447 (12%)

Query: 77  LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSF 136
           +D SKN L  H+   LS      +L++S N ++    S I ++  L  L +         
Sbjct: 5   VDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIIS-------- 53

Query: 137 SFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLR 196
                            N +  ++   F      +L+ L+L +  L  +         L+
Sbjct: 54  ----------------HNRIQYLDISVFKFNQ--ELEYLDLSHNKLVKISCHPTVN--LK 93

Query: 197 FIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSL-SGNFQLPSSKHDL-LRIDISHNKFS 254
            +DLS N            N ++L  L L    L   +    +  +   + + +      
Sbjct: 94  HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE 153

Query: 255 GQLPGNMGKILPELLSLNLSENG---------FEVRIPSSMSEMKRLESLDLSSNNFSGE 305
            + P  +     E L +    N           +      +S +K +   +  S   S  
Sbjct: 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL 213

Query: 306 LPRQFLSGCFSLSF--LSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKAT-- 361
              Q      +L+   +  + N     +     T + +  ++N    G++       +  
Sbjct: 214 AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT 273

Query: 362 ---SLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQL-SGSVPSSFNLSSLRRLYMHM 417
              +L    + +++      + +   S +   + + +      +     +S    L    
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333

Query: 418 NAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEF---SYLGILLLRGNQLKGNIPN 474
           N    ++       + L  L L+ NQ    +            L  L +  N +  +   
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 475 QLC-HLSLLNILDLSYNKFNGPIPVCF 500
             C     L  L++S N     I  C 
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (257), Expect = 4e-23
 Identities = 76/546 (13%), Positives = 164/546 (30%), Gaps = 88/546 (16%)

Query: 100 VLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLV 157
           ++D S N L      V  ++ +    L++  N        + + + SKL++  +S N + 
Sbjct: 4   LVDRSKNGLI----HVPKDLSQKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ 58

Query: 158 KIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNN 217
            ++   F      +L+ L+L +  L  +       L  + +DLS N            N 
Sbjct: 59  YLDISVFKFNQ--ELEYLDLSHNKLVKISCHPTVNL--KHLDLSFNAFDALPICKEFGNM 114

Query: 218 TKLDTLYLLNNSL-SGNFQLPSSKHDL-LRIDISHNKFSGQLPGNMGKILPELLSLNLSE 275
           ++L  L L    L   +    +  +   + + +       + P  +     E L +    
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 276 NG---------FEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSF--LSLSD 324
           N           +      +S +K +   +  S   S     Q      +L+   +  + 
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 325 NHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNL 384
           N     +     T + +  ++N    G++           + D S             +L
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLD--------FRDFDYSGT-----------SL 275

Query: 385 SGLQFLDISENQLSGSVPSSFN-LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQ 443
             L    +  +         +   S++      ++           + S    LD  +N 
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335

Query: 444 FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANV 503
            +                                HL+ L  L L  N+            
Sbjct: 336 LT-DTV-----------------------FENCGHLTELETLILQMNQLK---------- 361

Query: 504 TLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYES 563
               L + A      ++ Q++        NS     +            +   +    ++
Sbjct: 362 ---ELSKIAEMTTQMKSLQQLD----ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 564 YKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQ-SLSNLKMIES 622
               +   +  LD   N++   IP ++  L  ++ LN++ N L  S+P      L  ++ 
Sbjct: 415 IFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQK 472

Query: 623 LDLSHN 628
           + L  N
Sbjct: 473 IWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.4 bits (232), Expect = 5e-20
 Identities = 73/402 (18%), Positives = 127/402 (31%), Gaps = 36/402 (8%)

Query: 269 LSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 328
             ++ S+NG    +P  +S  ++   L++S N  S EL    +     L  L +S N +Q
Sbjct: 3   FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ 58

Query: 329 G--EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHW--FGNL 384
                VF  +  L +L L++N              +L  LDLS N     +P    FGN+
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHPT---VNLKHLDLSFNAF-DALPICKEFGNM 114

Query: 385 SGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQF 444
           S L+FL +S   L  S        ++ ++ + +    G                L     
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE-KEDPEGLQDFNTESLHIVFP 173

Query: 445 SGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVT 504
           +     +I + S   +  L  + +K  + +  C   L  +  L  N     + +     T
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 505 LWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESY 564
                        W +  RI             +S VK          ++     R   Y
Sbjct: 234 -------------WNSFIRILQLVWHTTVWYFSISNVK----------LQGQLDFRDFDY 270

Query: 565 KGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLD 624
            G  L  ++      +             S +   N + +          S +     LD
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 625 LSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFAN 666
            S+N L+  +      L  L    +  N L   +  A     
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.4 bits (193), Expect = 3e-15
 Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 41/294 (13%)

Query: 13  RLCVQIIEHVWSPIIKKPQELWHKFFPKGSITDFSVEDSCRKTSGVPLTVFVNTGICELK 72
            L +  IE  W+  I+  Q +WH      ++  FS+ +   K  G       +     LK
Sbjct: 224 NLTLNNIETTWNSFIRILQLVWHT-----TVWYFSISNV--KLQGQLDFRDFDYSGTSLK 276

Query: 73  KLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNF 132
            L    +  +      S      +++ + + + +          + I    +L   +N  
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL- 335

Query: 133 EGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALP--SFLL 190
                                  L     E    L   +L+ L L+   L  L   + + 
Sbjct: 336 -----------------------LTDTVFENCGHLT--ELETLILQMNQLKELSKIAEMT 370

Query: 191 HQL-DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSL-SGNFQLPSSKHDLLRIDI 248
            Q+  L+ +D+S N +              L +L + +N L    F+    +  +  +D+
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDL 428

Query: 249 SHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNF 302
             NK    +P  + K L  L  LN++ N  +         +  L+ + L +N +
Sbjct: 429 HSNKIK-SIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  120 bits (304), Expect = 2e-30
 Identities = 66/276 (23%), Positives = 106/276 (38%), Gaps = 31/276 (11%)

Query: 175 LNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF 234
           +   +  L ++P+ +        ++L  NKLQ + P  +    T+L  L L +N LS   
Sbjct: 12  IRCNSKGLTSVPTGIPS--SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS--- 65

Query: 235 QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLES 294
                               G            L  L+LS NG    + S+   +++LE 
Sbjct: 66  ----------FKGCCSQSDFG---------TTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105

Query: 295 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTNLCWLYLNNNHFSGK 352
           LD   +N              +L +L +S  H +     +F   ++L  L +  N F   
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 353 IQDG-LSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSL 410
                 ++  +L  LDLS   L    P  F +LS LQ L++S N         +  L+SL
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225

Query: 411 RRLYMHMNAFNGSIPGALRR-SSSLTVLDLRDNQFS 445
           + L   +N    S    L+   SSL  L+L  N F+
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  113 bits (286), Expect = 5e-28
 Identities = 60/230 (26%), Positives = 85/230 (36%), Gaps = 14/230 (6%)

Query: 270 SLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ- 328
            +  +  G    +P+ +        L+L SN     LP         L+ LSLS N L  
Sbjct: 11  EIRCNSKGLT-SVPTGIPS--SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 329 ---GEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPH--WFGN 383
                     +T+L +L L+ N     +         L  LD  ++ L  Q+     F +
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLS 124

Query: 384 LSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSI-PGALRRSSSLTVLDLRD 441
           L  L +LDIS      +    F  LSSL  L M  N+F  +  P       +LT LDL  
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 442 NQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491
            Q     P   N  S L +L +  N            L+ L +LD S N 
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (264), Expect = 5e-25
 Identities = 60/264 (22%), Positives = 101/264 (38%), Gaps = 24/264 (9%)

Query: 99  KVLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSN--- 154
             +  +S  LT    SV   I  S   L L+ N  + S         ++L    LS+   
Sbjct: 10  TEIRCNSKGLT----SVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGL 64

Query: 155 SLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLL 214
           S     ++   G     LK L+L    +  + S  L    L  +D  H+ L+      + 
Sbjct: 65  SFKGCCSQSDFGTT--SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 215 QNNTKLDTLYLLNNSLS----GNFQ-LPSSKHDLLRIDISHNKFSGQLPGNMGKILPELL 269
            +   L  L + +        G F  L S    L  + ++ N F      ++   L  L 
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSS----LEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 270 SLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHL-- 327
            L+LS+   E   P++ + +  L+ L++S NNF   L         SL  L  S NH+  
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMT 237

Query: 328 -QGEVVFPNSTNLCWLYLNNNHFS 350
            + + +    ++L +L L  N F+
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.9 bits (247), Expect = 7e-23
 Identities = 57/262 (21%), Positives = 89/262 (33%), Gaps = 53/262 (20%)

Query: 70  ELKKLVELDLSKNNLYGH--LSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 127
           +L +L +L LS N L      S      T +K LDLS N +   + S    ++ LE+L  
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 108

Query: 128 DDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPS 187
             +N         LK  S+  VF                L    L  L++ +       +
Sbjct: 109 QHSN---------LKQMSEFSVFL--------------SLR--NLIYLDISHTHTRVAFN 143

Query: 188 FLLHQLD-LRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRI 246
            + + L  L  + ++ N  Q  F   +      L  L L    L                
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--------------- 188

Query: 247 DISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGEL 306
            +S   F+          L  L  LN+S N F          +  L+ LD S N+     
Sbjct: 189 QLSPTAFNS---------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 307 PRQFLSGCFSLSFLSLSDNHLQ 328
            ++      SL+FL+L+ N   
Sbjct: 240 KQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 8/160 (5%)

Query: 342 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSV 401
           +  N+   +  +  G+   +S   L+L +N L       F  L+ L  L +S N LS   
Sbjct: 12  IRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 402 PSSF---NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPI-WINEFSY 457
             S      +SL+ L +  N    ++         L  LD + +                
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 458 LGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIP 497
           L  L +     +         LS L +L ++ N F     
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 567 DILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLS--GSIPQSLSNLKMIESLD 624
            I +  T L+   N+L          L+++  L+LS N LS  G   QS      ++ LD
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 625 LSHNDLSGQIPPQLTELNFLSNFNVSYNHLS 655
           LS N +   +      L  L + +  +++L 
Sbjct: 85  LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 114

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 45/231 (19%), Positives = 72/231 (31%), Gaps = 46/231 (19%)

Query: 433 SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKF 492
           S T +       + S+P  I   S    L L  N+L+         L+ L  L LS N  
Sbjct: 8   SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 493 NGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRG 552
           +       ++    +L                           L+LS       +S   G
Sbjct: 65  SFKGCCSQSDFGTTSL-------------------------KYLDLSFNGVITMSSNFLG 99

Query: 553 IEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEI-GSLSEIRALNLSHNFLSGSIP 611
                           L  +  LDF  + L       +  SL  +  L++SH     +  
Sbjct: 100 ----------------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 612 QSLSNLKMIESLDLSHNDLSGQIPPQ-LTELNFLSNFNVSYNHLSGPTPNA 661
              + L  +E L ++ N       P   TEL  L+  ++S   L   +P A
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  119 bits (300), Expect = 8e-29
 Identities = 71/428 (16%), Positives = 137/428 (32%), Gaps = 49/428 (11%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
               V             +     L  +  LD  ++ +T    + I  +  L  L    N
Sbjct: 20  FASEVAAAFEMQAT---DTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSN 74

Query: 131 NFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLL 190
           N   +   +   N   L      ++  K+   +   L   +L  LN     L  L     
Sbjct: 75  NIT-TLDLSQNTN---LTYLACDSN--KLTNLDVTPLT--KLTYLNCDTNKLTKLDVSQN 126

Query: 191 HQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISH 250
               L +++ + N L        + +NT+L  L    N       +      L  +D S 
Sbjct: 127 PL--LTYLNCARNTLT----EIDVSHNTQLTELDCHLNKKITKLDVTPQTQ-LTTLDCSF 179

Query: 251 NKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQF 310
           NK + +L  +       L  LN   N    ++   +++  +L  LD SSN  + E+    
Sbjct: 180 NKIT-ELDVSQ---NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--- 228

Query: 311 LSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSN 370
           ++    L++   S N L  E+     + L  L+          +  L+  T L+      
Sbjct: 229 VTPLTQLTYFDCSVNPLT-ELDVSTLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEG 284

Query: 371 NMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRR 430
                ++     + + L  LD     ++  +  S     L  LY++       +   +  
Sbjct: 285 CRKIKELD--VTHNTQLYLLDCQAAGIT-ELDLS-QNPKLVYLYLNNTELT-ELD--VSH 337

Query: 431 SSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQL----KGNIPNQLCHLSL-LNIL 485
           ++ L  L   +          + +   L        Q     K  + N    +++  ++L
Sbjct: 338 NTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395

Query: 486 DLSYNKFN 493
           D   N  N
Sbjct: 396 DQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  112 bits (283), Expect = 2e-26
 Identities = 78/386 (20%), Positives = 140/386 (36%), Gaps = 46/386 (11%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
           TGI +L  L +L  + NN+   L   LS  T++  L   SN+LT NL   +  +  L YL
Sbjct: 58  TGIEKLTGLTKLICTSNNI-TTLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYL 111

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
           + D N        +     + L      N+L +I+          QL  L+         
Sbjct: 112 NCDTNKLT-KLDVSQNPLLTYLNCA--RNTLTEIDVSHNT-----QLTELDCHLNKKITK 163

Query: 186 PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 245
                 Q  L  +D S NK+        +  N  L+ L    N+++   +L  +++  L 
Sbjct: 164 LDVT-PQTQLTTLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNIT---KLDLNQNIQLT 215

Query: 246 -IDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSG 304
            +D S NK + ++       L +L   + S N     +  S   + +L +L     +   
Sbjct: 216 FLDCSSNKLT-EIDVTP---LTQLTYFDCSVNPLT-ELDVST--LSKLTTLHCIQTDLL- 267

Query: 305 ELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLL 364
           E+    L+    L +          E+   ++T L  L       + ++   LS+   L+
Sbjct: 268 EID---LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLV 321

Query: 365 ELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSI 424
            L L+N  L  ++     + + L+ L      +     S   + +L   +          
Sbjct: 322 YLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTITMP 377

Query: 425 PGALRRSS-----SLTVLDLRDNQFS 445
              L  +S     S  +LD   N  +
Sbjct: 378 KETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (255), Expect = 5e-23
 Identities = 65/401 (16%), Positives = 131/401 (32%), Gaps = 46/401 (11%)

Query: 93  SNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKL 152
            N                  +  +A    L  L   +++         ++  + L     
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLAT---LTSLDCHNSSIT---DMTGIEKLTGLTKLIC 71

Query: 153 SNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSW 212
           +++   I T +        L  L   +  L  L   +     L +++   NKL     S 
Sbjct: 72  TSN--NITTLDLSQNT--NLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVS- 124

Query: 213 LLQNNTKLDTLYLLNNSLSGNFQLPSSK-HDLLRIDISHNKFSGQLPGNMGKILPELLSL 271
               N  L  L    N+L+   ++  S    L  +D   NK   +L         +L +L
Sbjct: 125 ---QNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTP---QTQLTTL 175

Query: 272 NLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV 331
           + S N         +S+ K L  L+  +NN + +L    L+    L+FL  S N L  E+
Sbjct: 176 DCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD---LNQNIQLTFLDCSSNKLT-EI 227

Query: 332 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLD 391
                T L +   + N  +      L   + L  L      L  +I     + + L +  
Sbjct: 228 DVTPLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLL-EID--LTHNTQLIYFQ 281

Query: 392 ISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIW 451
               +    +  + + + L  L          +   L ++  L  L L + + +  +   
Sbjct: 282 AEGCRKIKELDVT-HNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD-- 334

Query: 452 INEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKF 492
           ++  + L  L      ++ +  + +  +  LN    +  + 
Sbjct: 335 VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 62/341 (18%), Positives = 117/341 (34%), Gaps = 36/341 (10%)

Query: 154 NSLVKIETEEFPGL-PEYQLKALNLRNCSLHALPSFLLHQLD-LRFIDLSHNKLQGTFPS 211
           N+L   +T+ F    P+    +       + A  +    QL  L  +D  ++ +      
Sbjct: 1   NTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG- 59

Query: 212 WLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR-IDISHNKFSGQLPGNMGKILPELLS 270
             ++  T L  L   +N+++    L  S++  L  +    NK +          L +L  
Sbjct: 60  --IEKLTGLTKLICTSNNIT---TLDLSQNTNLTYLACDSNKLTNLDVTP----LTKLTY 110

Query: 271 LNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE 330
           LN   N         +S+   L  L+ + N  + E+    +S    L+ L    N    +
Sbjct: 111 LNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKITK 163

Query: 331 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFL 390
           +     T L  L  + N  +   +  +S+   L  L+   N +  ++         L FL
Sbjct: 164 LDVTPQTQLTTLDCSFNKIT---ELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFL 217

Query: 391 DISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPI 450
           D S N+L+  +  +  L+ L      +N         L   S LT L          I +
Sbjct: 218 DCSSNKLT-EIDVT-PLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLL-EIDL 271

Query: 451 WINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491
             N      ++  +    +      + H + L +LD     
Sbjct: 272 THN----TQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAG 308

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 50/294 (17%), Positives = 98/294 (33%), Gaps = 69/294 (23%)

Query: 362 SLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFN 421
           S +                   L+ L  LD   + ++  +     L+ L +L    N   
Sbjct: 22  SEVAAAFEMQAT---DTISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNNIT 77

Query: 422 GSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSL 481
            ++   L ++++LT L    N+ + ++ +     + L  L    N+L   +   +    L
Sbjct: 78  -TLD--LSQNTNLTYLACDSNKLT-NLDV--TPLTKLTYLNCDTNKLT-KLD--VSQNPL 128

Query: 482 LNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEV 541
           L  L+ + N            + +    Q               TE + + N  +   +V
Sbjct: 129 LTYLNCARNTLT--------EIDVSHNTQL--------------TELDCHLNKKITKLDV 166

Query: 542 KHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNL 601
                                         +T LD S N++T     ++     +  LN 
Sbjct: 167 TP-------------------------QTQLTTLDCSFNKITE---LDVSQNKLLNRLNC 198

Query: 602 SHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLS 655
             N ++  +   L+    +  LD S N L+ +I   +T L  L+ F+ S N L+
Sbjct: 199 DTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT 246

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 26/187 (13%), Positives = 52/187 (27%), Gaps = 37/187 (19%)

Query: 68  ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 127
           +    +L+            L   +++ T + +LD  +  +T   +  ++    L YL L
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYL 325

Query: 128 DDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPS 187
           ++         +                                LK+L+  N  +    S
Sbjct: 326 NNTELT-ELDVSHNTK----------------------------LKSLSCVNAHIQDFSS 356

Query: 188 FLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRID 247
                  L     +  +   T P   L NN+    +        GN  +     D    D
Sbjct: 357 VGKIPA-LNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGN-PMNIEPGDGGVYD 413

Query: 248 ISHNKFS 254
            + N  +
Sbjct: 414 QATNTIT 420

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  117 bits (294), Expect = 4e-28
 Identities = 59/261 (22%), Positives = 96/261 (36%), Gaps = 32/261 (12%)

Query: 165 PGLPEYQLKALNLRNCSLHALPSFLLHQLD-LRFIDLSHNKLQGTFPSWLLQNNTKLDTL 223
            G+     + LNL    +  +       L  L  + LS N ++ T           L+TL
Sbjct: 60  DGIST-NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTL 117

Query: 224 YLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIP 283
            L +N L+                I +  F           L +L  L L  N  E  IP
Sbjct: 118 ELFDNRLT---------------TIPNGAFVY---------LSKLKELWLRNNPIE-SIP 152

Query: 284 SSM-SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWL 342
           S   + +  L  LDL        +      G  +L +L+L+  +L+          L  L
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL 212

Query: 343 YLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSV 401
            L+ NH S  I+ G       L +L +  + +     + F NL  L  ++++ N L+   
Sbjct: 213 DLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271

Query: 402 PSSF-NLSSLRRLYMHMNAFN 421
              F  L  L R+++H N +N
Sbjct: 272 HDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  112 bits (281), Expect = 2e-26
 Identities = 61/257 (23%), Positives = 97/257 (37%), Gaps = 17/257 (6%)

Query: 241 HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSN 300
           +   ++         ++P     I      LNL EN  ++   +S   ++ LE L LS N
Sbjct: 43  NQFSKVICVRKNLR-EVPDG---ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 301 NFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL- 357
           +    +     +G  +L+ L L DN L       F   + L  L+L NN     I     
Sbjct: 99  HIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAF 156

Query: 358 SKATSLLELDLSNNMLYGQIP-HWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMH 416
           ++  SL  LDL        I    F  LS L++L+++   L   +P+   L  L  L + 
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLS 215

Query: 417 MNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLG---ILLLRGNQLKGNIP 473
            N  +   PG+ +    L  L +  +Q    I    N F  L     + L  N L     
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIE--RNAFDNLQSLVEINLAHNNLTLLPH 272

Query: 474 NQLCHLSLLNILDLSYN 490
           +    L  L  + L +N
Sbjct: 273 DLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  110 bits (276), Expect = 8e-26
 Identities = 57/231 (24%), Positives = 88/231 (38%), Gaps = 12/231 (5%)

Query: 266 PELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN 325
            +   +          +P  +S       L+L  N     +          L  L LS N
Sbjct: 43  NQFSKVICVRKNLR-EVPDGIST--NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRN 98

Query: 326 HLQ--GEVVFPNSTNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPHWFG 382
           H++      F    NL  L L +N  +  I +G     + L EL L NN +     + F 
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157

Query: 383 NLSGLQFLDISE-NQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLR 440
            +  L+ LD+ E  +LS     +F  LS+LR L + M      IP  L     L  LDL 
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLS 215

Query: 441 DNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491
            N  S   P       +L  L +  +Q++    N   +L  L  ++L++N 
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  103 bits (258), Expect = 1e-23
 Identities = 53/234 (22%), Positives = 100/234 (42%), Gaps = 12/234 (5%)

Query: 96  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-N 154
           T+ ++L+L  NQ+     +   +++ LE L L  N+   +    +    + L   +L  N
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122

Query: 155 SLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLD-LRFIDLSHNKLQGTFPSWL 213
            L  I    F  L   +LK L LRN  + ++PS+  +++  LR +DL   K         
Sbjct: 123 RLTTIPNGAFVYLS--KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 214 LQNNTKLDTLYLLNNSLSGNFQLPSSKH--DLLRIDISHNKFSGQLPGNMGKILPELLSL 271
            +  + L  L L   +L    ++P+      L  +D+S N  S  +     + L  L  L
Sbjct: 181 FEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKL 236

Query: 272 NLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN 325
            + ++  +V   ++   ++ L  ++L+ NN +  LP    +    L  + L  N
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (254), Expect = 5e-23
 Identities = 55/237 (23%), Positives = 92/237 (38%), Gaps = 37/237 (15%)

Query: 71  LKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
           L+ L  L LS+N++   +     + L ++  L+L  N+LT         +  L+ L L +
Sbjct: 87  LRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145

Query: 130 NNFE--GSFSFNSLKNHSKLQVFKLS--NSLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
           N  E   S++FN + +   L+   L     L  I    F GL    L+ LNL  C+L  +
Sbjct: 146 NPIESIPSYAFNRIPS---LRRLDLGELKRLSYISEGAFEGLS--NLRYLNLAMCNLREI 200

Query: 186 PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 245
           P+     + L  +DLS N L         Q    L  L+++ + +               
Sbjct: 201 PNL-TPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-------------- 244

Query: 246 IDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNF 302
             I  N F           L  L+ +NL+ N   +      + +  LE + L  N +
Sbjct: 245 -VIERNAFDN---------LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 36/159 (22%), Positives = 53/159 (33%), Gaps = 24/159 (15%)

Query: 336 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISEN 395
           STN   L L+ N       +       L  L LS N +       F  L+ L  L++ +N
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 396 QLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINE 454
           +L+     +F  LS L+ L++  N        A  R  SL  LDL +             
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL------------ 170

Query: 455 FSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFN 493
                       +L          LS L  L+L+     
Sbjct: 171 -----------KRLSYISEGAFEGLSNLRYLNLAMCNLR 198

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 58/297 (19%), Positives = 104/297 (35%), Gaps = 63/297 (21%)

Query: 362 SLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAF 420
              ++      L  ++P      +  + L++ ENQ+     +SF +L  L  L +  N  
Sbjct: 44  QFSKVICVRKNL-REVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 421 NGSIPGALRRSSSLTVLDLRDNQFSGSIPI-WINEFSYLGILLLRGNQLKGNIPNQL-CH 478
                GA    ++L  L+L DN+ + +IP       S L  L LR N ++ +IP+     
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNR 158

Query: 479 LSLLNILDLSYNKFNGPIPV-CFANVT-LWTLGQAAGSFVLWETTQRISTEFEAYYNSTL 536
           +  L  LDL   K    I    F  ++ L  L                         +  
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYL-----------------------NLAMC 195

Query: 537 ELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEI 596
            L E+ +                         L  +  LD S N L+   P     L  +
Sbjct: 196 NLREIPNLTP----------------------LIKLDELDLSGNHLSAIRPGSFQGLMHL 233

Query: 597 RALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIP-------PQLTELNFLSN 646
           + L +  + +      +  NL+ +  ++L+HN+L+  +P         L  ++   N
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 573 TGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG 632
             L+   N++     +    L  +  L LS N +      + + L  + +L+L  N L+ 
Sbjct: 67  RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT- 125

Query: 633 QIPPQ-LTELNFLSNFNVSYNHLS 655
            IP      L+ L    +  N + 
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE 149

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  115 bits (291), Expect = 1e-27
 Identities = 62/259 (23%), Positives = 108/259 (41%), Gaps = 18/259 (6%)

Query: 171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSL 230
           Q   +      L  +P  +    + R+++L  N +Q    +   ++   L+ L L  NS+
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPS--NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSI 111

Query: 231 S----GNFQ-LPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSS 285
                G F  L S    L  +++  N  +  +P    + L +L  L L  N  E  IPS 
Sbjct: 112 RQIEVGAFNGLAS----LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSY 165

Query: 286 M-SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL 344
             + +  L  LDL        +      G F+L +L+L   +++          L  L +
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEM 225

Query: 345 NNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPS 403
           + NHF  +I+ G     +SL +L + N+ +     + F  L+ L  L+++ N LS     
Sbjct: 226 SGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284

Query: 404 SF-NLSSLRRLYMHMNAFN 421
            F  L  L  L++H N +N
Sbjct: 285 LFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  112 bits (281), Expect = 2e-26
 Identities = 66/257 (25%), Positives = 99/257 (38%), Gaps = 17/257 (6%)

Query: 241 HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSN 300
           +   ++  +    S ++P     I      LNL EN  ++    +   +  LE L L  N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQG---IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 301 NFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDG-L 357
           +   ++     +G  SL+ L L DN L       F   + L  L+L NN     I     
Sbjct: 110 SIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAF 167

Query: 358 SKATSLLELDLSNNMLYGQIP-HWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMH 416
           ++  SL+ LDL        I    F  L  L++L++    +   +P+   L  L  L M 
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMS 226

Query: 417 MNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLG---ILLLRGNQLKGNIP 473
            N F    PG+    SSL  L + ++Q S  I    N F  L     L L  N L     
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIER--NAFDGLASLVELNLAHNNLSSLPH 283

Query: 474 NQLCHLSLLNILDLSYN 490
           +    L  L  L L +N
Sbjct: 284 DLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  110 bits (277), Expect = 7e-26
 Identities = 51/231 (22%), Positives = 84/231 (36%), Gaps = 12/231 (5%)

Query: 266 PELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN 325
            +   +  +  G    +P  +        L+L  NN    +          L  L L  N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIPS--NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRN 109

Query: 326 HLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPHWFG 382
            ++      F    +L  L L +N  +  I  G     + L EL L NN +     + F 
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168

Query: 383 NLSGLQFLDISE-NQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLR 440
            +  L  LD+ E  +L      +F  L +L+ L + M      +P  L     L  L++ 
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMS 226

Query: 441 DNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491
            N F    P   +  S L  L +  +Q+     N    L+ L  L+L++N 
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (269), Expect = 8e-25
 Identities = 56/256 (21%), Positives = 97/256 (37%), Gaps = 14/256 (5%)

Query: 219 KLDTLYLLNNSLSGNFQLPSS-KHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENG 277
           +   +      LS   ++P     +   +++  N     +  +  + L  L  L L  N 
Sbjct: 55  QFSKVVCTRRGLS---EVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 278 FEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPN 335
                  + + +  L +L+L  N  +  +P         L  L L +N ++      F  
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169

Query: 336 STNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISE 394
             +L  L L        I +G      +L  L+L    +   +P+    L GL+ L++S 
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSG 227

Query: 395 NQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI- 452
           N      P SF  LSSL++L++  +  +     A    +SL  L+L  N  S S+P  + 
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLF 286

Query: 453 NEFSYLGILLLRGNQL 468
               YL  L L  N  
Sbjct: 287 TPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  102 bits (255), Expect = 5e-23
 Identities = 54/237 (22%), Positives = 87/237 (36%), Gaps = 37/237 (15%)

Query: 71  LKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
           L  L  L L +N++   +     + L  +  L+L  N LT         +  L  L L +
Sbjct: 98  LHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156

Query: 130 NNFE--GSFSFNSLKNHSKLQVFKLS--NSLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
           N  E   S++FN + +   L    L     L  I    F GL    LK LNL  C++  +
Sbjct: 157 NPIESIPSYAFNRVPS---LMRLDLGELKKLEYISEGAFEGLF--NLKYLNLGMCNIKDM 211

Query: 186 PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 245
           P+     + L  +++S N              + L  L+++N+ +S              
Sbjct: 212 PNL-TPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-------------- 255

Query: 246 IDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNF 302
             I  N F G         L  L+ LNL+ N          + ++ L  L L  N +
Sbjct: 256 -LIERNAFDG---------LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  100 bits (250), Expect = 2e-22
 Identities = 58/271 (21%), Positives = 95/271 (35%), Gaps = 42/271 (15%)

Query: 58  VPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA 117
           VP  +  NT          L+L +NN+    +    +L H++VL L  N +         
Sbjct: 69  VPQGIPSNT--------RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN 120

Query: 118 NIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALN 176
            + SL  L L DN         + +  SKL+   L  N +  I +  F  +P   L  L+
Sbjct: 121 GLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP--SLMRLD 177

Query: 177 LRNC-SLHALPSFLLHQLD-LRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF 234
           L     L  +       L  L++++L    ++   P+  L     L+ L +  N      
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFP--- 231

Query: 235 QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLES 294
                       +I    F G         L  L  L +  +   +   ++   +  L  
Sbjct: 232 ------------EIRPGSFHG---------LSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 295 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDN 325
           L+L+ NN S  LP    +    L  L L  N
Sbjct: 271 LNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.3 bits (201), Expect = 3e-16
 Identities = 51/200 (25%), Positives = 74/200 (37%), Gaps = 14/200 (7%)

Query: 316 SLSFLSLSDNHLQGEVVFPN--STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML 373
             S +  +   L      P    +N  +L L  N+      D       L  L L  N +
Sbjct: 55  QFSKVVCTRRGLS---EVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 374 YGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSS 432
                  F  L+ L  L++ +N L+     +F  LS LR L++  N        A  R  
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171

Query: 433 SLTVLDLRDNQFSGSIPIWINEFSYLG---ILLLRGNQLKGNIPNQLCHLSLLNILDLSY 489
           SL  LDL + +    I      F  L     L L    +K ++PN L  L  L  L++S 
Sbjct: 172 SLMRLDLGELKKLEYIS--EGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSG 227

Query: 490 NKFNGPIPVCFANVT-LWTL 508
           N F    P  F  ++ L  L
Sbjct: 228 NHFPEIRPGSFHGLSSLKKL 247

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 56/296 (18%), Positives = 97/296 (32%), Gaps = 61/296 (20%)

Query: 362 SLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAF 420
              ++  +   L  ++P      S  ++L++ EN +      +F +L  L  L +  N+ 
Sbjct: 55  QFSKVVCTRRGL-SEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 421 NGSIPGALRRSSSLTVLDLRDNQFSGSIPI-WINEFSYLGILLLRGNQLKGNIPNQLCHL 479
                GA    +SL  L+L DN  +  IP       S L  L LR N ++         +
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170

Query: 480 SLLNILDLS-YNKFNGPIPVCFANVT-LWTLGQAAGSFVLWETTQRISTEFEAYYNSTLE 537
             L  LDL    K        F  +  L  L                         +   
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYL--------------------NLGMCN--- 207

Query: 538 LSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIR 597
           + ++ +                         L  +  L+ S N      P     LS ++
Sbjct: 208 IKDMPNLTP----------------------LVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 598 ALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIP-------PQLTELNFLSN 646
            L + ++ +S     +   L  +  L+L+HN+LS  +P         L EL+   N
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 2/84 (2%)

Query: 573 TGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG 632
             L+   N +          L  +  L L  N +      + + L  + +L+L  N L+ 
Sbjct: 78  RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT- 136

Query: 633 QIPPQ-LTELNFLSNFNVSYNHLS 655
            IP      L+ L    +  N + 
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIE 160

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  114 bits (288), Expect = 4e-27
 Identities = 90/478 (18%), Positives = 147/478 (30%), Gaps = 96/478 (20%)

Query: 72  KKLVELDLSKNNL-YGHLSPCLSNLTHIKVLDLSSNQLT----GNLQSVIANIKSLEYLS 126
             +  LD+    L     +  L  L   +V+ L    LT     ++ S +    +L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 127 LDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSL---- 182
           L  N                  V  +   L           P  +++ L+L+NC L    
Sbjct: 63  LRSNELGDVG------------VHCVLQGL---------QTPSCKIQKLSLQNCCLTGAG 101

Query: 183 -HALPSFLLHQLDLRFIDLSHNKLQGT----FPSWLLQNNTKLDTLYLLNNSLSGN---- 233
              L S L     L+ + LS N L           LL    +L+ L L   SLS      
Sbjct: 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161

Query: 234 -FQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPE----LLSLNLSENGFEVR----IPS 284
              +  +K D   + +S+N  +      + + L +    L +L L   G        +  
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221

Query: 285 SMSEMKRLESLDLSSNNFSGE----LPRQFLSGCFSLSFLSLSDNHLQGE------VVFP 334
            ++    L  L L SN         L    L     L  L + +  +  +       V  
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 335 NSTNLCWLYLNNNHFSGK----IQDGLSKA-TSLLELDLSNNML----YGQIPHWFGNLS 385
              +L  L L  N    +    + + L +    L  L + +                   
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR 341

Query: 386 GLQFLDISENQLSGSVPSSF------NLSSLRRLYMHMNAFN----GSIPGALRRSSSLT 435
            L  L IS N+L  +             S LR L++     +     S+   L  + SL 
Sbjct: 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401

Query: 436 VLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFN 493
            LDL +N    +           GIL L    ++           LL  L L    ++
Sbjct: 402 ELDLSNNCLGDA-----------GILQL-VESVRQPG-------CLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 79.6 bits (197), Expect = 8e-16
 Identities = 63/331 (19%), Positives = 115/331 (34%), Gaps = 66/331 (19%)

Query: 73  KLVELDLSKNNL----YGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA-----NIKSLE 123
           +L +L L   +L       L+  L      K L +S+N +      V+      +   LE
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 124 YLSLDDNNF--EGSFSF-NSLKNHSKLQVFKLSNSLVKIETEEFPGL------PEYQLKA 174
            L L+      +        + + + L+   L ++  K+       L      P  +L+ 
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSN--KLGDVGMAELCPGLLHPSSRLRT 260

Query: 175 LNLRNCSL-----HALPSFLLHQLDLRFIDLSHNKLQGT----FPSWLLQNNTKLDTLYL 225
           L +  C +       L   L  +  L+ + L+ N+L           LL+   +L++L++
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320

Query: 226 LNNSLSGNF-----QLPSSKHDLLRIDISHNKFSGQLPGNMG-KILPELLSLNLSENGFE 279
            + S +         + +    LL + IS+N+       + G + L + L    S     
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRL-----EDAGVRELCQGLGQPGS----- 370

Query: 280 VRIPSSMSEMKRLESLDLSSNNFSGELPR---QFLSGCFSLSFLSLSDNHLQ-------G 329
                       L  L L+  + S          L    SL  L LS+N L         
Sbjct: 371 -----------VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419

Query: 330 EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKA 360
           E V      L  L L + ++S +++D L   
Sbjct: 420 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 450

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.4 bits (173), Expect = 7e-13
 Identities = 58/324 (17%), Positives = 95/324 (29%), Gaps = 48/324 (14%)

Query: 217 NTKLDTLYLLNNSLS--GNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKIL---PELLSL 271
           +  + +L +    LS     +L         + +     +     ++   L   P L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 272 NLSENGFEVRIPSSMSEM-----KRLESLDLSSNNFSGELPRQF---LSGCFSLSFLSLS 323
           NL  N         + +       +++ L L +   +G         L    +L  L LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 324 DNHLQGEVVF-------PNSTNLCWLYLNNNHFSGK----IQDGLSKATSLLELDLSNNM 372
           DN L    +             L  L L     S      +   L       EL +SNN 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 373 LYGQIPHWFG-----NLSGLQFLDISENQLSGSVPSSF-----NLSSLRRLYMHMNAFNG 422
           +              +   L+ L +    ++            + +SLR L +  N    
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 423 S-----IPGALRRSSSLTVLDLRDNQFS----GSIPIWINEFSYLGILLLRGNQLKGNIP 473
                  PG L  SS L  L + +   +    G +   +     L  L L GN+L     
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 474 NQLC-----HLSLLNILDLSYNKF 492
             LC         L  L +    F
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.5 bits (150), Expect = 5e-10
 Identities = 55/264 (20%), Positives = 91/264 (34%), Gaps = 68/264 (25%)

Query: 67  GICELKKLVELDLSKNNLYG----HLSP-CLSNLTHIKVLDLSSNQLT----GNLQSVIA 117
            +     L EL L  N L       L P  L   + ++ L +    +T    G+L  V+ 
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 118 NIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNL 177
             +SL+ LSL  N                     L  +L++         P  QL++L +
Sbjct: 282 AKESLKELSLAGNELGDE------------GARLLCETLLE---------PGCQLESLWV 320

Query: 178 RNCSL-----HALPSFLLHQLDLRFIDLSHNKLQGT----FPSWLLQNNTKLDTLYLLNN 228
           ++CS          S L     L  + +S+N+L+          L Q  + L  L+L + 
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380

Query: 229 SLSGN------FQLPSSKHDLLRIDISHNKFSGQLPGNMG-KILPELLSLNLSENGFEVR 281
            +S +        L ++   L  +D+S+N       G+ G   L E +            
Sbjct: 381 DVSDSSCSSLAATLLANHS-LRELDLSNNCL-----GDAGILQLVESVRQPGC------- 427

Query: 282 IPSSMSEMKRLESLDLSSNNFSGE 305
                     LE L L    +S E
Sbjct: 428 ---------LLEQLVLYDIYWSEE 442

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  111 bits (279), Expect = 8e-27
 Identities = 64/335 (19%), Positives = 117/335 (34%), Gaps = 51/335 (15%)

Query: 171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSL 230
            L+ +   +  L A+P  +    D   +DL +N +         +    L  L L+NN +
Sbjct: 34  HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 231 SGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMK 290
           S                I    FS          L +L  L +S+N     IP ++    
Sbjct: 91  S---------------KIHEKAFSP---------LRKLQKLYISKNHLV-EIPPNLP--S 123

Query: 291 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS---TNLCWLYLNNN 347
            L  L +  N    ++P+   SG  +++ + +  N L+     P +     L +L ++  
Sbjct: 124 SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 348 HFSGKIQDGLSKATSLLELDLSNNMLYGQIPHW-FGNLSGLQFLDISENQLSGSVPSSF- 405
             +  I   L    +L EL L +N +   I        S L  L +  NQ+      S  
Sbjct: 183 KLT-GIPKDL--PETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 406 NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP-------IWINEFSYL 458
            L +LR L++  N  +  +P  L     L V+ L  N  +  +         +  + +Y 
Sbjct: 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYY 296

Query: 459 GILLLRGNQLK-GNIPNQL-CHLSLLNILDLSYNK 491
             + L  N +    +       ++    +     K
Sbjct: 297 NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  109 bits (274), Expect = 4e-26
 Identities = 57/357 (15%), Positives = 107/357 (29%), Gaps = 88/357 (24%)

Query: 96  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNS 155
               +LDL +N ++   +     ++ L  L L +N                         
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK------------------------ 89

Query: 156 LVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQ 215
           + KI  + F  L   +L+ L +    L  +P  L     L  + +  N+++   P  +  
Sbjct: 90  ISKIHEKAFSPLR--KLQKLYISKNHLVEIPPNLPS--SLVELRIHDNRIR-KVPKGVFS 144

Query: 216 NNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSE 275
               ++ + +  N L                      F G           +L  L +SE
Sbjct: 145 GLRNMNCIEMGGNPLE-------------NSGFEPGAFDG----------LKLNYLRISE 181

Query: 276 NGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPN 335
                 IP  +   + L  L L  N     +  + L     L  L L  N ++       
Sbjct: 182 AKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR------- 230

Query: 336 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISEN 395
                   + N   S           +L EL L NN L  ++P    +L  LQ + +  N
Sbjct: 231 -------MIENGSLSF--------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274

Query: 396 QLSGSVPSSF-------NLSSLRRLYMHMN--AFNGSIPGALRRSSSLTVLDLRDNQ 443
            ++    + F         +    + +  N   +    P   R  +    +   + +
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  107 bits (269), Expect = 2e-25
 Identities = 57/293 (19%), Positives = 110/293 (37%), Gaps = 37/293 (12%)

Query: 74  LVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNF 132
              LDL  N++   L       L H+  L L +N+++   +   + ++ L+ L +  N+ 
Sbjct: 56  TTLLDLQNNDI-SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 133 EGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLH--ALPSFL 189
                 N   +   L   ++  N + K+    F GL    +  + +    L         
Sbjct: 115 V-EIPPNLPSS---LVELRIHDNRIRKVPKGVFSGLR--NMNCIEMGGNPLENSGFEPGA 168

Query: 190 LHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLS----GNFQ-LPSSKHDLL 244
              L L ++ +S  KL    P  L +    L+ L+L +N +      +          L 
Sbjct: 169 FDGLKLNYLRISEAKLT-GIPKDLPET---LNELHLDHNKIQAIELEDLLRYSK----LY 220

Query: 245 RIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSG 304
           R+ + HN+    +       LP L  L+L  N    R+P+ + ++K L+ + L +NN + 
Sbjct: 221 RLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT- 277

Query: 305 ELPR------QFLSGCFSLSFLSLSDNHLQGEVV----FPNSTNLCWLYLNNN 347
           ++         F       + +SL +N +    V    F   T+   +   N 
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 99.7 bits (249), Expect = 6e-23
 Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 16/235 (6%)

Query: 264 ILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 323
           I P+   L+L  N            ++ L +L L +N  S ++  +  S    L  L +S
Sbjct: 52  ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYIS 110

Query: 324 DNHLQGEVVFPNST--NLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQI--P 378
            NHL      P +   +L  L +++N    K+  G  S   ++  +++  N L      P
Sbjct: 111 KNHLV---EIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 379 HWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIP-GALRRSSSLTVL 437
             F  L  L +L ISE +L+  +P      +L  L++  N    +I    L R S L  L
Sbjct: 167 GAFDGLK-LNYLRISEAKLT-GIPKDL-PETLNELHLDHNKIQ-AIELEDLLRYSKLYRL 222

Query: 438 DLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKF 492
            L  NQ        ++    L  L L  N+L   +P  L  L LL ++ L  N  
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 50/183 (27%), Positives = 68/183 (37%), Gaps = 10/183 (5%)

Query: 312 SGCF-SLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSN 370
            GC   L  +  SD  L+  V    S +   L L NN  S   +D       L  L L N
Sbjct: 29  FGCHCHLRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN 87

Query: 371 NMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRR 430
           N +       F  L  LQ L IS+N L   +P +   SSL  L +H N       G    
Sbjct: 88  NKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL-PSSLVELRIHDNRIRKVPKGVFSG 145

Query: 431 SSSLTVLDLRDNQFSGSIPIWINEFSYLG--ILLLRGNQLKGNIPNQLCHLSLLNILDLS 488
             ++  +++  N    +       F  L    L +   +L   IP  L     LN L L 
Sbjct: 146 LRNMNCIEMGGNPLE-NSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLD 201

Query: 489 YNK 491
           +NK
Sbjct: 202 HNK 204

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 575 LDFSCNELTGDIPSEI-GSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQ 633
           L    N++   I  E     S++  L L HN +      SLS L  +  L L +N LS +
Sbjct: 198 LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255

Query: 634 IPPQLTELNFLSNFNVSYNHLS 655
           +P  L +L  L    +  N+++
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 567 DILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLS 626
           +I    T LD   N+++     +   L  + AL L +N +S    ++ S L+ ++ L +S
Sbjct: 51  EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110

Query: 627 HNDLS---GQIPPQLTELNFLSN 646
            N L      +P  L EL    N
Sbjct: 111 KNHLVEIPPNLPSSLVELRIHDN 133

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  114 bits (287), Expect = 1e-26
 Identities = 83/439 (18%), Positives = 154/439 (35%), Gaps = 33/439 (7%)

Query: 77  LDLSKNNLYGHLSPC-LSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGS 135
           L LS+N++   L    +S L+ ++VL LS N++      V    + LEYL +  N  + +
Sbjct: 57  LSLSQNSI-SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-N 114

Query: 136 FSFNSLKNHSKLQVFKLS-NSLVKI-ETEEFPGLPEYQLKALNLRNCSLHALP--SFLLH 191
            S   + +   L+   LS N    +   +EF  L   +L  L L       L        
Sbjct: 115 ISCCPMAS---LRHLDLSFNDFDVLPVCKEFGNLT--KLTFLGLSAAKFRQLDLLPVAHL 169

Query: 192 QLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKH----DLLRID 247
            L    +DL    ++G     L   NT +  L    NSL       S        L  I 
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 248 ISHNKF----SGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFS 303
           ++        +       G  L  +   ++                + +E L++ +   +
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 304 GELPRQFLSGCF----SLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL 357
             + R+  +       SL    + +       E ++     +    L+ +          
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 358 SKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHM 417
              +S   L+ + N+    +      L  LQ L +  N L      +    ++  L    
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409

Query: 418 NAFNGSIPGALRR----SSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIP 473
            + N     A  R    + S+ VL+L  N  +GS+   +     + +L L  N++  +IP
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIP 466

Query: 474 NQLCHLSLLNILDLSYNKF 492
             + HL  L  L+++ N+ 
Sbjct: 467 KDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  112 bits (281), Expect = 5e-26
 Identities = 82/398 (20%), Positives = 147/398 (36%), Gaps = 32/398 (8%)

Query: 71  LKKLVELDLSKNNLYGHLSPC--LSNLTHIKVLDLSSNQLT-GNLQSVIANIKSLEYLSL 127
           +  L  LDLS  N +  L  C    NLT +  L LS+ +    +L  V     S   L L
Sbjct: 120 MASLRHLDLS-FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL 178

Query: 128 DDNNFE-GSFSFNSLKNHSKLQVFKLSNSLVK-IETEEFPGLPEYQLKALNLRNCSLHAL 185
              + + G      + N + L +    NSL           L   QL  + L + +   L
Sbjct: 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL 238

Query: 186 PSFLLH-QLDLRFIDLSHNKLQGTFPSWL----LQNNTKLDTLYLLNNSLSGNFQLPSSK 240
            +FL         ++++   ++ T+   +          ++ L + N +++         
Sbjct: 239 MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298

Query: 241 HDLLRI------DISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLES 294
           +    +       + +  F       +  +  E+    LS +                  
Sbjct: 299 YSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357

Query: 295 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG-EVVFPNSTNLCWLYLNNNHF---- 349
           L+ + N F+  + +   S    L  L L  N L+    V   + N+  L   +       
Sbjct: 358 LNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416

Query: 350 SGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSG-LQFLDISENQLSGSVPSSF-NL 407
           S       + A S+L L+LS+NML G +   F  L   ++ LD+  N++  S+P    +L
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIM-SIPKDVTHL 472

Query: 408 SSLRRLYMHMNAFNGSIP-GALRRSSSLTVLDLRDNQF 444
            +L+ L +  N    S+P G   R +SL  + L DN +
Sbjct: 473 QALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  110 bits (277), Expect = 2e-25
 Identities = 83/444 (18%), Positives = 139/444 (31%), Gaps = 55/444 (12%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-NLQSVIANIKSLEYLSLDD 129
            + L  LD+S N L  ++S     +  ++ LDLS N      +     N+  L +L L  
Sbjct: 99  NQDLEYLDVSHNRL-QNISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155

Query: 130 NNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFL 189
             F        + +   L    L      I+  E   L       L+L           +
Sbjct: 156 AKFR-QLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQV 213

Query: 190 ------LHQLDLRFIDLSHNKLQG-TFPSWLLQNNTKLDTLYLLNNSLSGN----FQLPS 238
                 L  L L  I L+    Q        L     L  + L +   +           
Sbjct: 214 NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273

Query: 239 SKHDLLRIDISHNKFSGQLPGNMGKI----LPELLSLNLSENGFEVRIPSSMSEMKRLES 294
               +  ++I +   + ++           L  L+  ++    F     +  S    +  
Sbjct: 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333

Query: 295 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFS-- 350
             LS ++ +  +         S +FL+ + N     V         L  L L  N     
Sbjct: 334 KMLSISD-TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392

Query: 351 GKIQDGLSKATSLLELDLSNNML-YGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSS 409
            K+       +SL  LD+S N L              +  L++S N L+GSV        
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL---- 448

Query: 410 LRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLK 469
                                   + VLDL +N+   SIP  +     L  L +  NQLK
Sbjct: 449 ---------------------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486

Query: 470 GNIPN-QLCHLSLLNILDLSYNKF 492
            ++P+     L+ L  + L  N +
Sbjct: 487 -SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  108 bits (272), Expect = 6e-25
 Identities = 73/424 (17%), Positives = 129/424 (30%), Gaps = 40/424 (9%)

Query: 96  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNF----EGSFSFNSLKNHSKLQVFK 151
              K L LS N ++      I+ +  L  L L  N         F FN       L+   
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN-----QDLEYLD 106

Query: 152 LS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSF-LLHQL-DLRFIDLSHNKLQGT 208
           +S N L  I            L+ L+L       LP       L  L F+ LS  K +  
Sbjct: 107 VSHNRLQNISCCPMA-----SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161

Query: 209 FPSWLLQNNTKLDTLYLLNNSLSGNF--QLPSSKHDLLRIDISHNKFSGQLPGNMGKILP 266
               +   +     L L++  + G     L      +L +    N             L 
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 267 ELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFS------LSFL 320
            L   N+  N    +   +           L+      E   +     F       + +L
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 321 SLSDNHLQGEVVFPNST-------NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML 373
           ++ +  +   +     T       +L   ++ N  F    +   S    +    LS +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 374 YGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSS 432
                    + S   FL+ ++N  + SV      L  L+ L +  N    +       + 
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTK 400

Query: 433 SLTVLDLRDNQF----SGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLS 488
           +++ L+  D       S +          + +L L  N L G++   L     + +LDL 
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLH 458

Query: 489 YNKF 492
            N+ 
Sbjct: 459 NNRI 462

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.0 bits (205), Expect = 1e-16
 Identities = 90/554 (16%), Positives = 170/554 (30%), Gaps = 76/554 (13%)

Query: 84  LYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEGSFSFNSLK 142
           + G ++P  + L    ++D S+  LT     V  ++    + LSL  N+         + 
Sbjct: 21  IVGSMTPFSNELE--SMVDYSNRNLT----HVPKDLPPRTKALSLSQNSIS-ELRMPDIS 73

Query: 143 NHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLS 201
             S+L+V +LS N +  ++   F       L+ L++ +  L  +    +  L  R +DLS
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLFNQ--DLEYLDVSHNRLQNISCCPMASL--RHLDLS 129

Query: 202 HNKLQGTFPSWLLQNNTKLDTLYLLNNSL-SGNFQ-LPSSKHDLLRIDISHNKFSGQLPG 259
            N            N TKL  L L        +   +       + +D+      G    
Sbjct: 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE 189

Query: 260 NMGKILPELLSLNLSENG-FEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLS 318
           ++      +L L    N  F V++  S++ +  L+  ++  N+ + +    FLS      
Sbjct: 190 SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249

Query: 319 FLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIP 378
            L               +  L  +           Q        +  L++ N  +  +I 
Sbjct: 250 TLL--------------NVTLQHIETTWKCSVKLFQ--FFWPRPVEYLNIYNLTITERID 293

Query: 379 HWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLD 438
                 S                     L SL   ++    F  S        + + +  
Sbjct: 294 REEFTYSETA------------------LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335

Query: 439 LRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPV 498
           L  +       +     S    L    N    ++      L  L  L L  N        
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG------- 388

Query: 499 CFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFM-- 556
                 L    + A             +  E    S   L+   +    +    I  +  
Sbjct: 389 ------LKNFFKVALMTKNM-------SSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

Query: 557 -TKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQ-SL 614
            +     S    +   +  LD   N +   IP ++  L  ++ LN++ N L  S+P    
Sbjct: 436 SSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVF 493

Query: 615 SNLKMIESLDLSHN 628
             L  ++ + L  N
Sbjct: 494 DRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 80.7 bits (199), Expect = 6e-16
 Identities = 68/393 (17%), Positives = 122/393 (31%), Gaps = 43/393 (10%)

Query: 292 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHF 349
            ++L LS N+ S EL    +S    L  L LS N ++     VF  + +L +L +++N  
Sbjct: 54  TKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112

Query: 350 SGKIQDGLSKATSLLELDLSNNMLYGQIPHW--FGNLSGLQFLDISENQLSGSVPSSFNL 407
              I        SL  LDLS N  +  +P    FGNL+ L FL +S  +           
Sbjct: 113 Q-NISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 408 SSLRRLYMHMNAFNGS-IPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGN 466
             L  + + + +++         +  + TVL L  +  S          + LG L L   
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 467 QLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRIST 526
           +L      +L           +             ++              W+ + ++  
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVT------LQHIET-----------TWKCSVKLFQ 271

Query: 527 EFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDI 586
            F       L +  +    +            +   +Y    L  +              
Sbjct: 272 FFWPRPVEYLNIYNLTITER----------IDREEFTYSETALKSLMIEHVKNQVFLFSK 321

Query: 587 PSEIGSLSEIRALNLSHN---FLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNF 643
            +     +E+    LS +   F+    P S S+      L+ + N  +  +    + L  
Sbjct: 322 EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF---TFLNFTQNVFTDSVFQGCSTLKR 378

Query: 644 LSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNS 676
           L    +  N L      A    N         S
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.9 bits (171), Expect = 1e-12
 Identities = 42/286 (14%), Positives = 87/286 (30%), Gaps = 45/286 (15%)

Query: 23  WSPIIKKPQELWHKFFPKGSITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKN 82
           W   +K  Q  W +      +   ++ +     +              LK L+   +   
Sbjct: 263 WKCSVKLFQFFWPRP-----VEYLNIYNL--TITERIDREEFTYSETALKSLMIEHVKNQ 315

Query: 83  NLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLK 142
                     S    + +  LS +           +  S  +L+                
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ------------- 362

Query: 143 NHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALP--SFLLHQL-DLRFID 199
                      N       +    L   +L+ L L+   L      + +   +  L  +D
Sbjct: 363 -----------NVFTDSVFQGCSTLK--RLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409

Query: 200 LSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF--QLPSSKHDLLRIDISHNKFSGQL 257
           +S N L              +  L L +N L+G+    LP     +  +D+ +N+    +
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK---VKVLDLHNNRIM-SI 465

Query: 258 PGNMGKILPELLSLNLSENGFEVRIPSSM-SEMKRLESLDLSSNNF 302
           P ++   L  L  LN++ N  +  +P  +   +  L+ + L  N +
Sbjct: 466 PKDVTH-LQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  112 bits (282), Expect = 4e-26
 Identities = 70/386 (18%), Positives = 118/386 (30%), Gaps = 39/386 (10%)

Query: 39  PKGSITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHI 98
           P  +    S        SG     F      + +K      ++N     L  CL  +   
Sbjct: 6   PINNNFSLSQNSFYNTISGTYADYFSAWD--KWEKQALPGENRNEAVSLLKECL--INQF 61

Query: 99  KVLDLSSNQLTGNLQSVIANI-KSLEYLSLDDNNFEGSFSFNSLKNH-SKLQVFKLS-NS 155
             L L+   L+    S+  N+   +  L +  N         SL    + L+      N 
Sbjct: 62  SELQLNRLNLS----SLPDNLPPQITVLEITQNALI------SLPELPASLEYLDACDNR 111

Query: 156 LVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQ 215
           L        P LP   LK L++ N  L  LP        L +I+  +N+L    P     
Sbjct: 112 L-----STLPELPA-SLKHLDVDNNQLTMLPELPAL---LEYINADNNQLT-MLPELP-- 159

Query: 216 NNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSG--QLPGNMGKILPELLSLNL 273
             T L+ L + NN L+    LP     L  +D+S N       +P          +    
Sbjct: 160 --TSLEVLSVRNNQLT---FLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRC 214

Query: 274 SENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVF 333
            EN     IP ++  +    ++ L  N  S    R+ LS   +         +       
Sbjct: 215 RENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

Query: 334 PNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDIS 393
            N+ +          F    Q  +S+     E +   N           +    +     
Sbjct: 273 QNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFS-AFLDRLSDTVSARNTSGF 331

Query: 394 ENQLSGSVPSSFNLSSLRRLYMHMNA 419
             Q++  +      + LR+    + A
Sbjct: 332 REQVAAWLEKLSASAELRQQSFAVAA 357

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  108 bits (271), Expect = 8e-25
 Identities = 59/319 (18%), Positives = 102/319 (31%), Gaps = 37/319 (11%)

Query: 143 NHSKLQVFKLSNSLVKIETEEFPGLP--EYQLKALNLRNCSLHALPSFLLHQLDLRFIDL 200
           N+  L      N++     + F      E Q      RN ++  L   L++Q     + L
Sbjct: 9   NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF--SELQL 66

Query: 201 SHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGN 260
           +   L  + P  L      +  L +  N+L     LP     L  +D   N+ S  LP  
Sbjct: 67  NRLNLS-SLPDNLPPQ---ITVLEITQNALI---SLPELPASLEYLDACDNRLS-TLPEL 118

Query: 261 MGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFL 320
                  L  L++  N     +P   +    LE ++  +N  +  LP        SL  L
Sbjct: 119 PAS----LKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPEL----PTSLEVL 165

Query: 321 SLSDNHLQGEVVFPNS-TNLCWLYLNNNHFSG---KIQDGLSKATSLLELDLSNNMLYGQ 376
           S+ +N L      P    +L  L ++ N                 + +      N +   
Sbjct: 166 SVRNNQLT---FLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI-TH 221

Query: 377 IPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTV 436
           IP    +L     + + +N LS  +  S +  + +  Y     +     G          
Sbjct: 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA 281

Query: 437 LD----LRDNQFSGSIPIW 451
                   +N+ S    IW
Sbjct: 282 DAVTAWFPENKQSDVSQIW 300

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  104 bits (260), Expect = 2e-23
 Identities = 59/318 (18%), Positives = 100/318 (31%), Gaps = 51/318 (16%)

Query: 199 DLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLP--SSKHDLLRIDISHNKFSGQ 256
           +  +N + GT+         K +   L   + +    L      +    + ++    S  
Sbjct: 16  NSFYNTISGTYAD-YFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-S 73

Query: 257 LPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFS 316
           LP N   + P++  L +++N     +P   +    LE LD   N  S  LP    S    
Sbjct: 74  LPDN---LPPQITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TLPELPAS---- 121

Query: 317 LSFLSLSDNHLQGEVVFPNS-TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG 375
           L  L + +N L    + P     L ++  +NN    ++       TSL  L + NN L  
Sbjct: 122 LKHLDVDNNQLT---MLPELPALLEYINADNN----QLTMLPELPTSLEVLSVRNNQL-T 173

Query: 376 QIPHWFGNLSGLQFLDISENQLSGSVPSS-FNLSSLRRLYMHMNAFNGSIPGALRRSSSL 434
            +P    +L   + LD+S N L  S+P+                                
Sbjct: 174 FLPELPESL---EALDVSTNLLE-SLPAVPVRNHHSEET--------------------E 209

Query: 435 TVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG 494
                R+N+ +  IP  I        ++L  N L   I   L   +           F+ 
Sbjct: 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSM 268

Query: 495 PIPVCFANVTLWTLGQAA 512
                            A
Sbjct: 269 SDGQQNTLHRPLADAVTA 286

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 6/102 (5%)

Query: 567 DILNYMTGLDFSCNELTGDIPSEIGSL----SEIRALNLSHNFLSGSIPQSLSNLKMIES 622
           ++   +  LD S N L   +P+                   N ++  IP+++ +L    +
Sbjct: 177 ELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234

Query: 623 LDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQF 664
           + L  N LS +I   L++     +++    + S         
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  108 bits (272), Expect = 8e-26
 Identities = 59/295 (20%), Positives = 111/295 (37%), Gaps = 48/295 (16%)

Query: 165 PGLPEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQGTFPSWLLQNNTKLDTL 223
            GL E  +K+L+L N  +  + +  L +  +L+ + L+ N +  T       +   L+ L
Sbjct: 48  SGLTE-AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHL 105

Query: 224 YLLNNSLS----GNFQ-LPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGF 278
            L  N LS      F+ L S    L  +++  N +      ++   L +L  L +     
Sbjct: 106 DLSYNYLSNLSSSWFKPLSS----LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

Query: 279 EVRIPSSM-SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPN 335
             +I     + +  LE L++ +++       + L    ++S L L         E+    
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220

Query: 336 STNLCWLYLNNNH--------FSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGL 387
           ++++  L L +           S    + L K  +   + +++  L+ Q+      +SGL
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGL 279

Query: 388 QFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDN 442
             L+ S NQL  SVP                       G   R +SL  + L  N
Sbjct: 280 LELEFSRNQLK-SVP----------------------DGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (262), Expect = 1e-24
 Identities = 71/329 (21%), Positives = 118/329 (35%), Gaps = 69/329 (20%)

Query: 96  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNS 155
             +K LDLS+N++T    S +    +L+ L L  N                         
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG------------------------ 87

Query: 156 LVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLD-LRFIDLSHNKLQGTFPSWLL 214
           +  IE + F  L    L+ L+L    L  L S     L  L F++L  N  +    + L 
Sbjct: 88  INTIEEDSFSSLG--SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 215 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLS 274
            + TKL  L + N                    I    F+G         L  L  L + 
Sbjct: 146 SHLTKLQILRVGN-----MDTFTK---------IQRKDFAG---------LTFLEELEID 182

Query: 275 ENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFP 334
            +  +   P S+  ++ +  L L        L   F+    S+  L L D  L       
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT----- 236

Query: 335 NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISE 394
                     + +  S    + L K  +   + +++  L+ Q+      +SGL  L+ S 
Sbjct: 237 ---------FHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 395 NQLSGSVPSSF--NLSSLRRLYMHMNAFN 421
           NQL  SVP      L+SL+++++H N ++
Sbjct: 287 NQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 98.3 bits (245), Expect = 2e-22
 Identities = 51/246 (20%), Positives = 91/246 (36%), Gaps = 23/246 (9%)

Query: 264 ILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 323
           +   + SL+LS N       S +     L++L L+SN  +  +     S   SL  L LS
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLS 108

Query: 324 DNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPH- 379
            N+L       F   ++L +L L  N +    +  L S  T L  L + N   + +I   
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 380 WFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLD 438
            F  L+ L+ L+I  + L    P S  ++ ++  L +HM      +   +  +SS+  L+
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228

Query: 439 LRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPV 498
           LRD                        ++L     N L        + ++       +  
Sbjct: 229 LRDTDLDT----------------FHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMK 271

Query: 499 CFANVT 504
               ++
Sbjct: 272 LLNQIS 277

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.7 bits (241), Expect = 7e-22
 Identities = 45/262 (17%), Positives = 97/262 (37%), Gaps = 26/262 (9%)

Query: 71  LKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
              L  L L+ N +   +     S+L  ++ LDLS N L+    S    + SL +L+L  
Sbjct: 75  CVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133

Query: 130 NNFEGSFSFNSLKNHSKLQVFKLSN--SLVKIETEEFPGLPEYQLKALNLRNCSLHALPS 187
           N ++     +   + +KLQ+ ++ N  +  KI+ ++F GL    L+ L +    L +   
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT--FLEELEIDASDLQSYEP 191

Query: 188 FLLHQLD-LRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRI 246
             L  +  +  + L   +         +   + ++ L L +  L                
Sbjct: 192 KSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTF-HFSE-------- 241

Query: 247 DISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGEL 306
            +S  + +  +            ++ +++     ++   ++++  L  L+ S N     +
Sbjct: 242 -LSTGETNSLIK------KFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKS-V 292

Query: 307 PRQFLSGCFSLSFLSLSDNHLQ 328
           P        SL  + L  N   
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.9 bits (213), Expect = 3e-18
 Identities = 57/343 (16%), Positives = 100/343 (29%), Gaps = 74/343 (21%)

Query: 294 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTNLCWLYLNNNHFSG 351
               SS + +  +P        ++  L LS+N +            NL  L L +N  + 
Sbjct: 35  ICKGSSGSLN-SIPSGLTE---AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN- 89

Query: 352 KIQDGL-SKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF--NLS 408
            I++   S   SL  LDLS N L      WF  LS L FL++  N       +S   +L+
Sbjct: 90  TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149

Query: 409 SLRRLYMHMNAFNGSIP-GALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQ 467
            L+ L +        I        + L  L++  +    S                    
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYE------------------ 190

Query: 468 LKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTE 527
                P  L  +  ++ L L   +    + +     +                       
Sbjct: 191 -----PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE-------------------- 225

Query: 528 FEAYYNSTLELSEVKHFYKASGQ-RGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDI 586
                   LEL +         +    E  +  +              +  +   L   +
Sbjct: 226 -------CLELRDTDLDTFHFSELSTGETNSLIK--------KFTFRNVKITDESLF-QV 269

Query: 587 PSEIGSLSEIRALNLSHNFLSGSIPQS-LSNLKMIESLDLSHN 628
              +  +S +  L  S N L  S+P      L  ++ + L  N
Sbjct: 270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.1 bits (172), Expect = 5e-13
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 16/166 (9%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
           L  L EL++  ++L  +    L ++ ++  L L   Q    L+  +    S+E L L D 
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 131 NFEG-------SFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLH 183
           + +        +   NSL      +  K+++  +    +    +    L  L      L 
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS--GLLELEFSRNQLK 290

Query: 184 ALPSFLLHQL-DLRFIDLSHNKLQ------GTFPSWLLQNNTKLDT 222
           ++P  +  +L  L+ I L  N              WL +N+ K   
Sbjct: 291 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 336

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  106 bits (267), Expect = 1e-25
 Identities = 53/207 (25%), Positives = 79/207 (38%), Gaps = 6/207 (2%)

Query: 242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNN 301
              RI +  N+ S  +P    +    L  L L  N       ++ + +  LE LDLS N 
Sbjct: 33  ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 302 FSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTNLCWLYLNNNHFSGKIQDG-LS 358
               +      G   L  L L    LQ  G  +F     L +LYL +N     + D    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 359 KATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHM 417
              +L  L L  N +       F  L  L  L + +N+++   P +F +L  L  LY+  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 418 NAFNGSIPGALRRSSSLTVLDLRDNQF 444
           N  +     AL    +L  L L DN +
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  106 bits (267), Expect = 1e-25
 Identities = 55/212 (25%), Positives = 76/212 (35%), Gaps = 11/212 (5%)

Query: 264 ILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 323
           I      + L  N       +S    + L  L L SN  +  +     +G   L  L LS
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88

Query: 324 DNHLQGEV---VFPNSTNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIP- 378
           DN     V    F     L  L+L+      ++  G      +L  L L +N L   +P 
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL-QALPD 146

Query: 379 HWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVL 437
             F +L  L  L +  N++S     +F  L SL RL +H N      P A R    L  L
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 438 DLRDNQFSGSIPIWI-NEFSYLGILLLRGNQL 468
            L  N  S ++P         L  L L  N  
Sbjct: 207 YLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.0 bits (242), Expect = 2e-22
 Identities = 55/236 (23%), Positives = 90/236 (38%), Gaps = 32/236 (13%)

Query: 96  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSN- 154
              + + L  N+++    +     ++L  L L  N         +    + L+   LS+ 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 155 -SLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLD-LRFIDLSHNKLQGTFPSW 212
             L  ++   F GL   +L  L+L  C L  L   L   L  L+++ L  N LQ   P  
Sbjct: 91  AQLRSVDPATFHGLG--RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDD 147

Query: 213 LLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLN 272
             ++   L  L+L  N +S                +    F G         L  L  L 
Sbjct: 148 TFRDLGNLTHLFLHGNRIS---------------SVPERAFRG---------LHSLDRLL 183

Query: 273 LSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 328
           L +N      P +  ++ RL +L L +NN S  LP + L+   +L +L L+DN   
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.4 bits (238), Expect = 7e-22
 Identities = 48/227 (21%), Positives = 77/227 (33%), Gaps = 32/227 (14%)

Query: 269 LSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 328
           ++ +  + G +  +P  +      + + L  N  S  +P      C +L+ L L  N L 
Sbjct: 14  VTTSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA 69

Query: 329 --GEVVFPNSTNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPHWFGNLS 385
                 F     L  L L++N     +          L  L L    L    P  F  L+
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 386 GLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQF 444
            LQ+L + +N L      +F +L +L  L++H N  +     A R   SL  L L  N+ 
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 445 SGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491
           +  +                        P+    L  L  L L  N 
Sbjct: 190 A-HVH-----------------------PHAFRDLGRLMTLYLFANN 212

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.1 bits (193), Expect = 6e-16
 Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 10/175 (5%)

Query: 336 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISEN 395
                 ++L+ N  S           +L  L L +N+L       F  L+ L+ LD+S+N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 396 QLSGSVPSS--FNLSSLRRLYMHMNAFNGSIP-GALRRSSSLTVLDLRDNQFSGSIPIWI 452
               SV  +    L  L  L++        +  G  R  ++L  L L+DN    ++P   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPD-- 146

Query: 453 NEFSYLG---ILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVT 504
           + F  LG    L L GN++          L  L+ L L  N+     P  F ++ 
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 32/160 (20%), Positives = 53/160 (33%), Gaps = 34/160 (21%)

Query: 71  LKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
           L  L  L L  N L   L      +L ++  L L  N+++   +     + SL+ L L  
Sbjct: 128 LAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 130 NNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFL 189
           N                         +  +    F  L   +L  L L   +L ALP+  
Sbjct: 187 NR------------------------VAHVHPHAFRDLG--RLMTLYLFANNLSALPTEA 220

Query: 190 LHQLD-LRFIDLSHNKLQ-----GTFPSWLLQNNTKLDTL 223
           L  L  L+++ L+ N            +WL +       +
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEV 260

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 1/90 (1%)

Query: 567 DILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLS 626
            I      +    N ++    +   +   +  L L  N L+     + + L ++E LDLS
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 627 HNDLSGQIPPQ-LTELNFLSNFNVSYNHLS 655
            N     + P     L  L   ++    L 
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 92.3 bits (229), Expect = 2e-20
 Identities = 52/299 (17%), Positives = 89/299 (29%), Gaps = 24/299 (8%)

Query: 216 NNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSE 275
           ++ K D     N   + + +L      L  +    +  +             L  L +  
Sbjct: 18  SDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRA 77

Query: 276 NGFEVRIPSSMSE---MKRLESLDLSSNNFSGELPRQFLSGCF-SLSFLSLSDNHLQGEV 331
                RI         +  L+ L L +   +G  P   L      L+ L+L +       
Sbjct: 78  ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD 137

Query: 332 VFPNS------TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHW----F 381
            +           L  L +   H      + +    +L  LDLS+N   G+         
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 382 GNLSGLQFLDISENQ---LSGSVPSSF-NLSSLRRLYMHMNAFNGSIP-GALRRSSSLTV 436
                LQ L +        SG   +       L+ L +  N+   +    +    S L  
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 437 LDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGP 495
           L+L        +P  +   + L +L L  N+L    P     L  +  L L  N F   
Sbjct: 258 LNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 90.0 bits (223), Expect = 9e-20
 Identities = 56/302 (18%), Positives = 92/302 (30%), Gaps = 25/302 (8%)

Query: 91  CLSNLTHIKVLDLSSNQLTGNLQ-SVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQV 149
           C  N +  K    S+    G     +    +SLEYL    +       F  +     L+ 
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 150 FKLSNSLVKIETEEFPGLPEY----QLKALNLRNCSLHALPSFLLHQL---DLRFIDLSH 202
             +     +I +    G         L+ L L N  +       L +    DL  ++L +
Sbjct: 73  LTVRA--ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130

Query: 203 NKLQGTFPSWLLQ----NNTKLDTLYLLNNSLSG-NFQLPSSKHDLLRIDISHNKFSGQL 257
                   +WL +        L  L +        + +       L  +D+S N   G+ 
Sbjct: 131 VSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 258 P---GNMGKILPELLSLNLSENGFE---VRIPSSMSEMKRLESLDLSSNNFSGELPRQFL 311
                      P L  L L   G E       +  +   +L+ LDLS N+          
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 312 SGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNN 371
                L+ L+LS   L+ +V       L  L L+ N           +   +  L L  N
Sbjct: 250 DWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGN 306

Query: 372 ML 373
             
Sbjct: 307 PF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.9 bits (215), Expect = 1e-18
 Identities = 49/275 (17%), Positives = 83/275 (30%), Gaps = 43/275 (15%)

Query: 92  LSNLTHIKVLDLSSNQLTGNLQSVIA---NIKSLEYLSLDDNNFEGSFSFNSLKN-HSKL 147
           +     +K L + + ++   +         I  L+ L+L++    G+     L+     L
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123

Query: 148 QVFKLSNSLVKIETEEFPGLPEY---QLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHN 203
            +  L N            L ++    LK L++            +     L  +DLS N
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183

Query: 204 KLQGTFP---SWLLQNNTKLDTLYLLNNSLSGNFQLPSS----KHDLLRIDISHNKFSGQ 256
              G      +        L  L L N  +     + S+    +  L  +D+SHN     
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243

Query: 257 LPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFS 316
                                       S     +L SL+LS      ++P+   +    
Sbjct: 244 AG------------------------APSCDWPSQLNSLNLSFTGLK-QVPKGLPA---K 275

Query: 317 LSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSG 351
           LS L LS N L           +  L L  N F  
Sbjct: 276 LSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 5e-13
 Identities = 65/371 (17%), Positives = 111/371 (29%), Gaps = 79/371 (21%)

Query: 296 DLSSNNFSGELPRQF-LSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQ 354
           +  S NFS   P       C   + + L       E +            +   F+    
Sbjct: 11  ESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE----ADLGQFTD--- 63

Query: 355 DGLSKATSLLELDLSNNMLYGQIPHW---FGNLSGLQFLDISENQLSGSVPSSFNLSSLR 411
             + K+ SL  L +    +  +I         +SGLQ L +   +++G+ P         
Sbjct: 64  --IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP--------- 112

Query: 412 RLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILL----LRGNQ 467
                        P        L +L+LR+  ++           +L   L    +    
Sbjct: 113 ------------PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 468 LKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTE 527
                  Q+     L+ LDLS N   G   +  A   L                      
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF-------------------- 200

Query: 528 FEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIP 587
                  TL++  +++    +       +               + GLD S N L     
Sbjct: 201 ------PTLQVLALRNAGMETPSGVCSALAAA---------RVQLQGLDLSHNSLRDAAG 245

Query: 588 SEIGS-LSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSN 646
           +      S++ +LNLS   L   +P+ L     +  LDLS+N L     P   EL  + N
Sbjct: 246 APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR--NPSPDELPQVGN 300

Query: 647 FNVSYNHLSGP 657
            ++  N     
Sbjct: 301 LSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 6e-13
 Identities = 39/171 (22%), Positives = 58/171 (33%), Gaps = 13/171 (7%)

Query: 69  CELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA----NIKSLEY 124
                L  L +++ +        +     +  LDLS N   G    + A       +L+ 
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 125 LSLDDNNFE--GSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCS 181
           L+L +   E              +LQ   LS NSL           P  QL +LNL    
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS-QLNSLNLSFTG 264

Query: 182 LHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSG 232
           L  +P  L  +  L  +DLS+N+L        L     +  L L  N    
Sbjct: 265 LKQVPKGLPAK--LSVLDLSYNRLDRNPSPDELPQ---VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 48/290 (16%), Positives = 81/290 (27%), Gaps = 52/290 (17%)

Query: 385 SGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQF 444
           S    L  ++ +L G   S   L         +  F   I     +S SL  L +R  + 
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDII-----KSLSLKRLTVRAARI 80

Query: 445 SGSIPIWINEF---SYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFA 501
              I          S L  L L   ++ G  P  L   +  ++  L+             
Sbjct: 81  PSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR----------- 129

Query: 502 NVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRY 561
           NV+  T          W                 L +++      +  Q           
Sbjct: 130 NVSWATRDAWLAELQQWLKP----------GLKVLSIAQAHSLNFSCEQ----------- 168

Query: 562 ESYKGDILNYMTGLDFSCNELTGDIPSEI----GSLSEIRALNLSHNF---LSGSIPQSL 614
                 +   ++ LD S N   G+              ++ L L +      SG      
Sbjct: 169 ----VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224

Query: 615 SNLKMIESLDLSHNDLSGQIPPQL-TELNFLSNFNVSYNHLSGPTPNAGQ 663
           +    ++ LDLSHN L            + L++ N+S+  L         
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA 274

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
             +L  L+LS   L   +   L     + VLDLS N+L  N       +  +  LSL  N
Sbjct: 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGN 306

Query: 131 NFEGS 135
            F  S
Sbjct: 307 PFLDS 311

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 88.2 bits (219), Expect = 2e-19
 Identities = 46/208 (22%), Positives = 68/208 (32%), Gaps = 17/208 (8%)

Query: 265 LPELLSLNLSENGFEV---RIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS 321
           +   L +N  +         +P           L LS N          L     L+ L+
Sbjct: 9   VASHLEVNCDKRNLTALPPDLPKD------TTILHLSENLLY-TFSLATLMPYTRLTQLN 61

Query: 322 LSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWF 381
           L    L    V      L  L L++N     +        +L  LD+S N L        
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 382 GNLSGLQFLDISENQLSGSVPSSF--NLSSLRRLYMHMNAFNGSIP-GALRRSSSLTVLD 438
             L  LQ L +  N+L  ++P         L +L +  N     +P G L    +L  L 
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178

Query: 439 LRDNQFSGSIPIWINEFSYLGILLLRGN 466
           L++N    +IP        L    L GN
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 81.7 bits (202), Expect = 3e-17
 Identities = 48/221 (21%), Positives = 81/221 (36%), Gaps = 17/221 (7%)

Query: 264 ILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 323
           +  +   L+LSEN       +++    RL  L+L     +       L     L  L LS
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP---VLGTLDLS 85

Query: 324 DNHLQG-EVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPHW- 380
            N LQ   ++      L  L ++ N  +  +  G       L EL L  N L   +P   
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL-KTLPPGL 143

Query: 381 FGNLSGLQFLDISENQLSGSVPSS-F-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLD 438
                 L+ L ++ N L+  +P+     L +L  L +  N+   +IP     S  L    
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201

Query: 439 LRDNQFSGSIPI-----WINEFSYLGILLLRGNQLKGNIPN 474
           L  N +  +  I     W+ + +    +  +G  +K    N
Sbjct: 202 LHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSN 242

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.4 bits (183), Expect = 1e-14
 Identities = 52/183 (28%), Positives = 69/183 (37%), Gaps = 19/183 (10%)

Query: 76  ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEG- 134
            L LS+N LY      L   T +  L+L   +LT     V   +  L  L L  N  +  
Sbjct: 35  ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQSL 92

Query: 135 SFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL 193
                +L     L V  +S N L  +      GL   +L+ L L+   L  LP  LL   
Sbjct: 93  PLLGQTL---PALTVLDVSFNRLTSLPLGALRGLG--ELQELYLKGNELKTLPPGLLTPT 147

Query: 194 -DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLS----GNFQLPSSKHDLLRIDI 248
             L  + L++N L    P+ LL     LDTL L  NSL     G F        L    +
Sbjct: 148 PKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL----LPFAFL 202

Query: 249 SHN 251
             N
Sbjct: 203 HGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAF 420
                L LS N+LY          + L  L++   +L+  +     L  L  L +  N  
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSHNQL 89

Query: 421 NGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI-NEFSYLGILLLRGNQLKGNIPNQLC-H 478
             S+P   +   +LTVLD+  N+ + S+P+        L  L L+GN+LK  +P  L   
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146

Query: 479 LSLLNILDLSYNK 491
              L  L L+ N 
Sbjct: 147 TPKLEKLSLANNN 159

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 49/206 (23%), Positives = 68/206 (33%), Gaps = 32/206 (15%)

Query: 96  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNS 155
               +L LS N L     + +     L  L+LD           +L     L +    N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS--HNQ 88

Query: 156 LVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQGTFPSWLL 214
           L  +       LP   L  L++    L +LP   L  L +L+ + L  N+L+ T P  LL
Sbjct: 89  LQSLPL-LGQTLP--ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLL 144

Query: 215 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLS 274
               KL+ L L NN       L           +     +G         L  L +L L 
Sbjct: 145 TPTPKLEKLSLANN------NLTE---------LPAGLLNG---------LENLDTLLLQ 180

Query: 275 ENGFEVRIPSSMSEMKRLESLDLSSN 300
           EN     IP        L    L  N
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 9e-08
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 381 FGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLR 440
              ++    ++  +  L+ ++P          L++  N         L   + LT L+L 
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 441 DNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491
             + +  + +       LG L L  NQL+ ++P     L  L +LD+S+N+
Sbjct: 64  RAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 88.6 bits (220), Expect = 3e-19
 Identities = 47/243 (19%), Positives = 96/243 (39%), Gaps = 20/243 (8%)

Query: 265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 324
           L   + +   ++   V    + +++  + +L       +     + +    +L  L L D
Sbjct: 18  LANAIKIAAGKS--NVTDTVTQADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLELKD 72

Query: 325 NHLQGEVVFPNSTNLCWLYLNNNHFSGKIQD--GLSKATSLLELDLSNNMLYGQIPHWFG 382
           N +       N T +  L L+ N     +++   ++   S+  LDL++  +    P    
Sbjct: 73  NQITDLAPLKNLTKITELELSGN----PLKNVSAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 383 NLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDN 442
            LS LQ L +  NQ++ ++     L++L+ L +     +  +   L   S LT L   DN
Sbjct: 127 GLSNLQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDN 183

Query: 443 QFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFAN 502
           + S   P+       L  + L+ NQ+  ++   L + S L I+ L+             N
Sbjct: 184 KISDISPL--ASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTNQTITNQPVFYNNN 239

Query: 503 VTL 505
           + +
Sbjct: 240 LVV 242

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.6 bits (207), Expect = 1e-17
 Identities = 50/304 (16%), Positives = 108/304 (35%), Gaps = 22/304 (7%)

Query: 214 LQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNL 273
                    +    ++++           +  +       +  + G     L  L+ L L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDG-ITTLSAFGTGVT-TIEGVQY--LNNLIGLEL 70

Query: 274 SENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVF 333
            +N  ++   + +  + ++  L+LS N          ++G  S+  L L+   +      
Sbjct: 71  KDN--QITDLAPLKNLTKITELELSGNPLKNVSA---IAGLQSIKTLDLTSTQITDVTPL 125

Query: 334 PNSTNLCWLYLNNNHFSGKIQD--GLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLD 391
              +NL  LYL+ N    +I +   L+  T+L  L + N  +    P    NLS L  L 
Sbjct: 126 AGLSNLQVLYLDLN----QITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 392 ISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIW 451
             +N++S  +    +L +L  +++  N  +   P  L  +S+L ++ L +   +     +
Sbjct: 180 ADDNKIS-DISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFY 236

Query: 452 INEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQA 511
            N        +++G       P  +         +L++N  +    V +      T    
Sbjct: 237 NNNLVVP--NVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNT 294

Query: 512 AGSF 515
              F
Sbjct: 295 TVPF 298

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 50/330 (15%), Positives = 98/330 (29%), Gaps = 68/330 (20%)

Query: 79  LSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSF 138
           +++      + P    L +   +    + +T       A++  +  LS            
Sbjct: 3   ITQPTAINVIFP-DPALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEGV 59

Query: 139 NSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFI 198
             L N                            L  L L++  +  L + L +   +  +
Sbjct: 60  QYLNN----------------------------LIGLELKDNQITDL-APLKNLTKITEL 90

Query: 199 DLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLP 258
           +LS N L+       +     + TL L +  ++    L                      
Sbjct: 91  ELSGNPLKNVSA---IAGLQSIKTLDLTSTQITDVTPLAG-------------------- 127

Query: 259 GNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLS 318
                 L  L  L L  N  ++   S ++ +  L+ L + +   S       L+    L+
Sbjct: 128 ------LSNLQVLYLDLN--QITNISPLAGLTNLQYLSIGNAQVSDL---TPLANLSKLT 176

Query: 319 FLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIP 378
            L   DN +       +  NL  ++L NN  S      L+  ++L  + L+N  +  Q  
Sbjct: 177 TLKADDNKISDISPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQPV 234

Query: 379 HWFGNLSGLQFLDISENQLSGSVPSSFNLS 408
            +  NL     +             S N +
Sbjct: 235 FYNNNLVVPNVVKGPSGAPIAPATISDNGT 264

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.8 bits (192), Expect = 8e-16
 Identities = 57/356 (16%), Positives = 116/356 (32%), Gaps = 71/356 (19%)

Query: 70  ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
            L   +++   K+N+    +   ++L  I  L      +T  ++  +  + +L  L L D
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 130 NNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSF 188
           N          LKN +K+   +LS N L  +      GL                     
Sbjct: 73  NQIT---DLAPLKNLTKITELELSGNPLKNV--SAIAGLQS------------------- 108

Query: 189 LLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDI 248
                 ++ +DL+  ++    P   L   + L  LYL  N ++               +I
Sbjct: 109 ------IKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQIT---------------NI 144

Query: 249 SHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPR 308
           S               L  L  L++     +V   + ++ + +L +L    N  S   P 
Sbjct: 145 SPLAG-----------LTNLQYLSIGNA--QVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 309 QFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL 368
             L+   +L  + L +N +       N++NL  + L N   + +     +       +  
Sbjct: 191 --LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKG 248

Query: 369 SNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSI 424
            +       P    +       +++ N  S     S+  +           F+G++
Sbjct: 249 PSGAPI--APATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGTV 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.5 bits (186), Expect = 7e-15
 Identities = 41/260 (15%), Positives = 102/260 (39%), Gaps = 23/260 (8%)

Query: 67  GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 126
              +L  +  L      +   +   +  L ++  L+L  NQ+T +L + + N+  +  L 
Sbjct: 36  TQADLDGITTLSAFGTGV-TTIEG-VQYLNNLIGLELKDNQIT-DL-APLKNLTKITELE 91

Query: 127 LDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALP 186
           L  N  +   + +++     ++   L+++ +  +     GL    L+ L L    +  + 
Sbjct: 92  LSGNPLK---NVSAIAGLQSIKTLDLTSTQIT-DVTPLAGLS--NLQVLYLDLNQITNIS 145

Query: 187 SFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRI 246
             L    +L+++ + + ++    P   L N +KL TL   +N +S +    +S  +L+ +
Sbjct: 146 P-LAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKIS-DISPLASLPNLIEV 200

Query: 247 DISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPS-SMSEMKRLESLDLSSNNFSGE 305
            + +N+ S  +          L  + L+       I +  +     L   ++        
Sbjct: 201 HLKNNQIS-DVSPLAN--TSNLFIVTLTNQ----TITNQPVFYNNNLVVPNVVKGPSGAP 253

Query: 306 LPRQFLSGCFSLSFLSLSDN 325
           +    +S   + +  +L+ N
Sbjct: 254 IAPATISDNGTYASPNLTWN 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 58/238 (24%), Positives = 99/238 (41%), Gaps = 22/238 (9%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
            G+  L  L+ L+L  N +   L+P L NLT I  L+LS N L  N+ + IA ++S++ L
Sbjct: 57  EGVQYLNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTL 112

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHA 184
            L             L   S LQV  L  N +  I      GL    L+ L++ N  +  
Sbjct: 113 DLTSTQIT---DVTPLAGLSNLQVLYLDLNQITNI--SPLAGLT--NLQYLSIGNAQVSD 165

Query: 185 LPSFLLHQLD-LRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 243
           L    L  L  L  +    NK+    P   L +   L  ++L NN +S +    ++  +L
Sbjct: 166 LTP--LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQIS-DVSPLANTSNL 219

Query: 244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNN 301
             + +++   + Q       ++   +    S        P+++S+     S +L+ N 
Sbjct: 220 FIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA---PATISDNGTYASPNLTWNL 274

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 41/257 (15%), Positives = 90/257 (35%), Gaps = 58/257 (22%)

Query: 406 NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRG 465
            L++  ++    +    ++         +T L       + +I   +   + L  L L+ 
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 466 NQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRIS 525
           NQ+  ++   L +L+ +  L+LS N       +      L ++                 
Sbjct: 73  NQIT-DLAP-LKNLTKITELELSGNPLKNVSAIA----GLQSI----------------- 109

Query: 526 TEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGD 585
              +       +++ +                           L+ +  L    N++T +
Sbjct: 110 KTLDLTSTQITDVTPLAG-------------------------LSNLQVLYLDLNQIT-N 143

Query: 586 IPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLS 645
           I S +  L+ ++ L++ +  +S   P  L+NL  + +L    N +S  I P L  L  L 
Sbjct: 144 I-SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DISP-LASLPNLI 198

Query: 646 NFNVSYNHLSGPTPNAG 662
             ++  N +S  +P A 
Sbjct: 199 EVHLKNNQISDVSPLAN 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 87.6 bits (217), Expect = 8e-19
 Identities = 49/235 (20%), Positives = 83/235 (35%), Gaps = 14/235 (5%)

Query: 264 ILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 323
           +    + L        V    + S    LE +++S N+    +     S    L  + + 
Sbjct: 28  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 324 D-NHLQ--GEVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPH 379
             N+L       F N  NL +L ++N      + D     +   + LD+ +N+    I  
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 380 -WFGNLSG-LQFLDISENQLSGSVPSSFNLSSLRRLY-MHMNAFNGSIPGALRRSSSLTV 436
             F  LS     L +++N +     S+FN + L  L     N            +S   +
Sbjct: 147 NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206

Query: 437 LDLRDNQFSGSIPIWINEFSYLGILLLRG-NQLKGNIPNQLCHLSLLNILDLSYN 490
           LD+   +   S+P +      L  L  R    LK  +P  L  L  L    L+Y 
Sbjct: 207 LDISRTRIH-SLPSYG--LENLKKLRARSTYNLK-KLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 82.6 bits (204), Expect = 4e-17
 Identities = 52/280 (18%), Positives = 91/280 (32%), Gaps = 57/280 (20%)

Query: 96  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-- 153
            +   L     +L    +   +    LE + +  N+       +   N  KL   ++   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 154 NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWL 213
           N+L+ I  E F  LP                          L+++ +S+  ++   P   
Sbjct: 90  NNLLYINPEAFQNLPN-------------------------LQYLLISNTGIK-HLPDVH 123

Query: 214 LQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNL 273
             ++ +   L      +  N  + +         I  N F G        +  E + L L
Sbjct: 124 KIHSLQKVLLD-----IQDNINIHT---------IERNSFVG--------LSFESVILWL 161

Query: 274 SENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEV 331
           ++NG +  I +S     +L+ L+LS NN   ELP     G      L +S   +      
Sbjct: 162 NKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220

Query: 332 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNN 371
              N   L      N     K    L K  +L+E  L+  
Sbjct: 221 GLENLKKLRARSTYNL----KKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 76.4 bits (188), Expect = 4e-15
 Identities = 44/228 (19%), Positives = 72/228 (31%), Gaps = 18/228 (7%)

Query: 293 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTNLCWLYLNNNHFS 350
                  +  + E+P        +   L      L+   +  F    +L  + ++ N   
Sbjct: 12  RVFLCQESKVT-EIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 351 GKIQDG-LSKATSLLELDLSN-NMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSS--FN 406
             I+    S    L E+ +   N L    P  F NL  LQ+L IS   +   +P     +
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIH 126

Query: 407 LSSLRRLYMHMNAFNGSIP-GALRR-SSSLTVLDLRDNQFSGSIPIWI-NEFSYLGILLL 463
                 L +  N    +I   +    S    +L L  N     I     N      + L 
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLS 185

Query: 464 RGNQLKGNIPNQ-LCHLSLLNILDLSYNKFNGPIPVCFANVT-LWTLG 509
             N L+  +PN      S   ILD+S  + +        N+  L    
Sbjct: 186 DNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 232

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 41/204 (20%), Positives = 72/204 (35%), Gaps = 32/204 (15%)

Query: 50  DSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQL 108
                   +   VF N     L KL E+ + K N   +++P    NL +++ L +S+  +
Sbjct: 62  SQNDVLEVIEADVFSN-----LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI 116

Query: 109 TGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHS-KLQVFKLS-NSLVKIETEEFPG 166
                    +      L + DN    +   NS    S +  +  L+ N + +I    F G
Sbjct: 117 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG 176

Query: 167 LPEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQGTFPSWLLQNNTKL----- 220
               +L      N +L  LP+ + H       +D+S  ++  + PS+ L+N  KL     
Sbjct: 177 TQLDEL--NLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARST 233

Query: 221 ---------------DTLYLLNNS 229
                              L   S
Sbjct: 234 YNLKKLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 51/307 (16%), Positives = 101/307 (32%), Gaps = 43/307 (14%)

Query: 390 LDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449
               E++++  +PS     +   L   +        GA      L  +++  N     I 
Sbjct: 14  FLCQESKVT-EIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71

Query: 450 IWINEFSYLG----ILLLRGNQLKGNIPNQLC-HLSLLNILDLSYNKFNGPIPVCFA--- 501
              + FS L     I + + N L   I  +   +L  L  L +S         V      
Sbjct: 72  A--DVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 502 ---------NVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEV-KHFYKASGQR 551
                    N+ + T+     SF        +S E    + +   + E+    +  +   
Sbjct: 129 QKVLLDIQDNINIHTI--ERNSF------VGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180

Query: 552 GIEFMTKKRYESYKGDI---LNYMTGLDFSCNELTGDIPSEI-GSLSEIRALNLSHNFLS 607
            +        E    D+    +    LD S   +   +PS    +L ++RA +  +    
Sbjct: 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK-- 237

Query: 608 GSIPQSLSNLKMIESLDLSHN---DLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQF 664
             +P +L  L  +    L++            Q++EL+ + N ++    +   T   GQ 
Sbjct: 238 -KLP-TLEKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQR 295

Query: 665 ANFDEQN 671
           ++  E N
Sbjct: 296 SSLAEDN 302

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.4 bits (221), Expect = 1e-18
 Identities = 59/363 (16%), Positives = 119/363 (32%), Gaps = 71/363 (19%)

Query: 74  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 133
           + E       +   + P           +L    +T         + S++ +  ++++ +
Sbjct: 1   MGETITVSTPI-KQIFP-DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK 56

Query: 134 GSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQ 192
              S   ++    +    L+ N L  I+                     L  L +     
Sbjct: 57  ---SVQGIQYLPNVTKLFLNGNKLTDIK--------------------PLTNLKN----- 88

Query: 193 LDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNK 252
             L ++ L  NK++       L++  KL +L L +N +S               DI+   
Sbjct: 89  --LGWLFLDENKIKDLSS---LKDLKKLKSLSLEHNGIS---------------DINGLV 128

Query: 253 FSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLS 312
                       LP+L SL L  N   +   + +S + +L++L L  N  S ++    L+
Sbjct: 129 H-----------LPQLESLYLGNNK--ITDITVLSRLTKLDTLSLEDNQIS-DIV--PLA 172

Query: 313 GCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNM 372
           G   L  L LS NH+          NL  L L +     K  +  S       +  ++  
Sbjct: 173 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 232

Query: 373 LYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSS 432
           L    P    +    +  ++  +    +   SF       +      F+G +   L+   
Sbjct: 233 LV--TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVY 290

Query: 433 SLT 435
           +++
Sbjct: 291 TVS 293

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.6 bits (219), Expect = 2e-18
 Identities = 57/284 (20%), Positives = 105/284 (36%), Gaps = 43/284 (15%)

Query: 265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 324
             E +  NL +    V    + +E+  ++ +  ++++    +  Q +    +++ L L+ 
Sbjct: 20  FAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIK-SV--QGIQYLPNVTKLFLNG 74

Query: 325 NHLQGEVVFPNSTNLCWLYLNNNHFSGKIQD--GLSKATSLLELDLSNNMLYGQIPHWFG 382
           N L       N  NL WL+L+ N    KI+D   L     L  L L +N +   I     
Sbjct: 75  NKLTDIKPLTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGI-SDING-LV 128

Query: 383 NLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDN 442
           +L  L+ L +  N+++       +++ L RL                  + L  L L DN
Sbjct: 129 HLPQLESLYLGNNKIT-------DITVLSRL------------------TKLDTLSLEDN 163

Query: 443 QFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFAN 502
           Q S  I   +   + L  L L  N +  ++   L  L  L++L+L   +         +N
Sbjct: 164 QIS-DIVP-LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSN 219

Query: 503 VT-LWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFY 545
           +    T+    GS V  E         +      L     +  +
Sbjct: 220 LVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSF 263

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.0 bits (207), Expect = 5e-17
 Identities = 51/237 (21%), Positives = 103/237 (43%), Gaps = 20/237 (8%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
               EL  + ++  + +++   +   +  L ++  L L+ N+LT ++   + N+K+L +L
Sbjct: 37  VTQNELNSIDQIIANNSDI-KSVQG-IQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWL 92

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHA 184
            LD+N  +     +SLK+  KL+   L  N +  I       LP  QL++L L N  +  
Sbjct: 93  FLDENKIK---DLSSLKDLKKLKSLSLEHNGISDING--LVHLP--QLESLYLGNNKITD 145

Query: 185 LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 244
           + + L     L  + L  N++    P   L   TKL  LYL  N +S + +  +   +L 
Sbjct: 146 I-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHIS-DLRALAGLKNLD 200

Query: 245 RIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNN 301
            +++   +     P N    L    ++  ++    +  P  +S+    E  ++  + 
Sbjct: 201 VLELFSQECL-NKPINHQSNLVVPNTVKNTDG--SLVTPEIISDDGDYEKPNVKWHL 254

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 83.2 bits (205), Expect = 1e-16
 Identities = 57/297 (19%), Positives = 101/297 (34%), Gaps = 28/297 (9%)

Query: 200 LSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPG 259
                ++  FP        +     L   S++           + +I  +++     + G
Sbjct: 6   TVSTPIKQIFP---DDAFAETIKDNLKKKSVTDAVTQNELNS-IDQIIANNSDIK-SVQG 60

Query: 260 NMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSF 319
              + LP +  L L+ N  ++     ++ +K L  L L  N    +L    L     L  
Sbjct: 61  I--QYLPNVTKLFLNGN--KLTDIKPLTNLKNLGWLFLDENKIK-DL--SSLKDLKKLKS 113

Query: 320 LSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQD--GLSKATSLLELDLSNNMLYGQI 377
           LSL  N +       +   L  LYL NN    KI D   LS+ T L  L L +N +   +
Sbjct: 114 LSLEHNGISDINGLVHLPQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQISDIV 169

Query: 378 PHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVL 437
           P     L+ LQ L +S+N +S  + +   L +L  L +                     +
Sbjct: 170 P--LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 438 DLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG 494
              D       P  I++             +K ++P     +S +    ++  K   
Sbjct: 227 KNTDGSL--VTPEIISDDGD-----YEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKA 276

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.8 bits (139), Expect = 8e-09
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 13/193 (6%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
            G+  L +L  L L  N +   ++  LS LT +  L L  NQ++ ++   +A +  L+ L
Sbjct: 125 NGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNL 180

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHA 184
            L  N+        +L     L V +L     +         L       +   + SL  
Sbjct: 181 YLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVV--PNTVKNTDGSLVT 235

Query: 185 LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 244
            P  +    D    ++  +     F + +     +  T+        G    P  +   +
Sbjct: 236 -PEIISDDGDYEKPNVKWHLP--EFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTV 292

Query: 245 RIDISHNKFSGQL 257
             D+       ++
Sbjct: 293 SYDVDGTVIKTKV 305

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.1 bits (106), Expect = 8e-05
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
           L  +  L    N ++ DI   +  L ++ +L L +N ++      LS L  +++L L  N
Sbjct: 108 LKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDN 163

Query: 629 DLSGQIPPQLTELNFLSNFNVSYNHLS 655
            +S  I P L  L  L N  +S NH+S
Sbjct: 164 QIS-DIVP-LAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 7e-04
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
           L  +T L  + N+LT DI   + +L  +  L L  N +   +  SL +LK ++SL L HN
Sbjct: 64  LPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHN 119

Query: 629 DLSGQIPPQLTELNFLSNFNVSYNHLSGPTP 659
            +S  I   L  L  L +  +  N ++  T 
Sbjct: 120 GIS-DING-LVHLPQLESLYLGNNKITDITV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 35/214 (16%), Positives = 75/214 (35%), Gaps = 17/214 (7%)

Query: 264 ILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 323
           + P   +L L E         + S +  +  + +S +    +L          ++ + + 
Sbjct: 29  LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 324 DN----HLQGEVVFPNSTNLCWLYLNNNHFSGKIQDG--LSKATSLLELDLSNNMLYGQI 377
           +     ++  +        L +L + N        D   +        L++++N     I
Sbjct: 89  NTRNLTYIDPD-ALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 378 P-HWFGNLSG-LQFLDISENQLSGSVPSS-FNLSSLRRLYMHMNAFNGSIP-GALRR-SS 432
           P + F  L      L +  N  + SV    FN + L  +Y++ N +   I   A     S
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 433 SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGN 466
             ++LD+     + ++P       +L  L+ R  
Sbjct: 206 GPSLLDVSQTSVT-ALP--SKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 74.7 bits (184), Expect = 4e-15
 Identities = 40/204 (19%), Positives = 76/204 (37%), Gaps = 14/204 (6%)

Query: 153 SNSLVKIETEEFPGLPEYQLKALNL-RNCSLHALPSFLLHQLD-LRFIDLSHNKLQGTFP 210
              L  I +  F  LP   +  + +  + +L  L S   + L  +  I++ + +      
Sbjct: 40  ETHLRTIPSHAFSNLP--NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97

Query: 211 SWLLQNNTKLDTLYLLNNSLS--GNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILP-E 267
              L+    L  L + N  L    +     S      ++I+ N +   +P N  + L  E
Sbjct: 98  PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157

Query: 268 LLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFS-LSFLSLSDNH 326
            L+L L  NGF   +        +L+++ L+ N +   + +    G +S  S L +S   
Sbjct: 158 TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

Query: 327 LQGEVVFPNS--TNLCWLYLNNNH 348
           +      P+    +L  L   N  
Sbjct: 217 VT---ALPSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 13/187 (6%)

Query: 316 SLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNM 372
           S   L L + HL+      F N  N+  +Y++ +    +++       + +  +++ N  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 373 LYGQIPH-WFGNLSGLQFLDISENQLSGSVPSS---FNLSSLRRLYMHMNAFNGSIP-GA 427
               I       L  L+FL I    L    P     ++      L +  N +  SIP  A
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 428 LRR-SSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCH--LSLLNI 484
            +   +    L L +N F+ S+  +    + L  + L  N+    I         S  ++
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 485 LDLSYNK 491
           LD+S   
Sbjct: 210 LDVSQTS 216

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 41/237 (17%), Positives = 79/237 (33%), Gaps = 35/237 (14%)

Query: 93  SNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKL 152
           S     + L L    L        +N+ ++  + +  +        +S  N SK+   ++
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 153 SN--SLVKIETEEFPGLPEYQLKALNLRNCSLHALP--SFLLHQLDLRFIDLSHNKLQGT 208
            N  +L  I+ +    LP   LK L + N  L   P  + +        ++++ N    +
Sbjct: 88  RNTRNLTYIDPDALKELP--LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 209 FPSWLLQN-NTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPE 267
            P    Q    +  TL L NN  +                +    F+G           +
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFT---------------SVQGYAFNG----------TK 180

Query: 268 LLSLNLSENGFEVRIPSSM--SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL 322
           L ++ L++N +   I              LD+S  + +  LP + L     L   + 
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 20/166 (12%), Positives = 57/166 (34%), Gaps = 6/166 (3%)

Query: 71  LKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQS-VIANIKSLEYLSLD 128
           L  +  + +S +     L      NL+ +  +++ + +    +    +  +  L++L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 129 DNNFEGSFSFNSLKNHSKLQVFKLS--NSLVKIETEEFPGLPEYQLKALNLRNCSLHALP 186
           +   +       + +     + +++    +  I    F GL   +   L L N    ++ 
Sbjct: 114 NTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN-ETLTLKLYNNGFTSVQ 172

Query: 187 SFLLHQLDLRFIDLSHNKLQGTFPSWLLQN-NTKLDTLYLLNNSLS 231
            +  +   L  + L+ NK              +    L +   S++
Sbjct: 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 7e-11
 Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 16/166 (9%)

Query: 71  LKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQSVIA--NIKSLEYLSL 127
           L K+  +++       ++ P  L  L  +K L + +  L      +    +      L +
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEI 137

Query: 128 DDNNFEGSFSFNSLKN-HSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNL-RNCSLHA 184
            DN +  S   N+ +   ++    KL  N    ++   F G    +L A+ L +N  L  
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT---KLDAVYLNKNKYLTV 194

Query: 185 LPSFLLHQL--DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNN 228
           +       +      +D+S   +    PS  L++   L  L   N 
Sbjct: 195 IDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEH---LKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 32/185 (17%), Positives = 59/185 (31%), Gaps = 32/185 (17%)

Query: 314 CFSLSFLSLSDNHLQGEVVFPN-STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNM 372
           C       ++   +Q     P+   +   L L   H         S   ++  + +S ++
Sbjct: 10  CHQEEDFRVTCKDIQ---RIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 373 LYGQIP-HWFGNLSGLQFLDISENQLSGSVPSS--FNLSSLRRLYMHMNAFNGSIPG--A 427
              Q+  H F NLS +  ++I   +    +       L  L+ L +         P    
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTK 125

Query: 428 LRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDL 487
           +  +    +L++ DN +  SIP+  N F  L                     +    L L
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPV--NAFQGLC--------------------NETLTLKL 163

Query: 488 SYNKF 492
             N F
Sbjct: 164 YNNGF 168

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 10/121 (8%)

Query: 384 LSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIP-GALRRSSSLTVLDLRD 441
               Q L + E  L      +F NL ++ R+Y+ ++     +   +    S +T +++R+
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 442 NQFSGSIPIWINEFSYLG---ILLLRGNQLKGNIPNQ--LCHLSLLNILDLSYNKFNGPI 496
            +    I    +    L     L +    LK   P+   +    +  IL+++ N +   I
Sbjct: 90  TRNLTYIDP--DALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 497 P 497
           P
Sbjct: 147 P 147

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 53/241 (21%), Positives = 85/241 (35%), Gaps = 45/241 (18%)

Query: 96  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNF----EGSFSFNSLKNHSKLQVFK 151
              K LDLS N L         +   L+ L L         +G++      + S L    
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-----SLSHLSTLI 82

Query: 152 LS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQ--- 206
           L+ N +  +    F GL    L+ L     +L +L +F +  L  L+ ++++HN +Q   
Sbjct: 83  LTGNPIQSLALGAFSGLS--SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 207 --GTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKI 264
               F      N T L+ L L +N +                 I            + ++
Sbjct: 141 LPEYF-----SNLTNLEHLDLSSNKIQ---------------SIYCTDLR-----VLHQM 175

Query: 265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 324
               LSL+LS N     I     +  RL+ L L +N     +P        SL  + L  
Sbjct: 176 PLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHT 233

Query: 325 N 325
           N
Sbjct: 234 N 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 14/213 (6%)

Query: 264 ILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 323
           +     +L+LS N        S      L+ LDLS       +          LS L L+
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 324 DNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNML-YGQIPH 379
            N +Q      F   ++L  L     + +  +++       +L EL++++N++   ++P 
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 380 WFGNLSGLQFLDISENQLSGSVPSSF-NLSSLR----RLYMHMNAFNGSIPGALRRSSSL 434
           +F NL+ L+ LD+S N++     +    L  +      L + +N  N  I     +   L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRL 202

Query: 435 TVLDLRDNQFSGSIPIWI-NEFSYLGILLLRGN 466
             L L  NQ   S+P  I +  + L  + L  N
Sbjct: 203 KELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 35/200 (17%)

Query: 71  LKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQS-VIANIKSLEYLSLD 128
             +L  LDLS+  +   +      +L+H+  L L+ N +  +L     + + SL+ L   
Sbjct: 51  FPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV 108

Query: 129 DNNFEG--SFSFNSLKNHSKLQVFKLS-NSLVKIETEE-FPGLPEYQLKALNLRNCSLHA 184
           + N     +F    LK    L+   ++ N +   +  E F  L    L+ L+L +  + +
Sbjct: 109 ETNLASLENFPIGHLKT---LKELNVAHNLIQSFKLPEYFSNLT--NLEHLDLSSNKIQS 163

Query: 185 LPSFL---LHQLDLRFI--DLSHNKLQ----GTFPSWLLQNNTKLDTLYLLNNSLS---- 231
           +       LHQ+ L  +  DLS N +     G F         +L  L L  N L     
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF------KEIRLKELALDTNQLKSVPD 217

Query: 232 GNFQLPSSKHDLLRIDISHN 251
           G F   +S   L +I +  N
Sbjct: 218 GIFDRLTS---LQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 49/230 (21%), Positives = 73/230 (31%), Gaps = 53/230 (23%)

Query: 282 IPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNL 339
           +P S       ++LDLS N     L          L  L LS   +Q   +  + + ++L
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 340 CWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLS 398
             L L  N     +  G  S  +SL +L      L        G+L  L+ L+++ N + 
Sbjct: 79  STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 399 GSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYL 458
            S                        P      ++L  LDL  N+   SI     +   L
Sbjct: 138 -SFKL---------------------PEYFSNLTNLEHLDLSSNKIQ-SIYC--TDLRVL 172

Query: 459 GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTL 508
             + L    L                 DLS N  N   P  F  + L  L
Sbjct: 173 HQMPLLNLSL-----------------DLSLNPMNFIQPGAFKEIRLKEL 205

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 18/154 (11%)

Query: 58  VPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQS--V 115
           + L  F       L  L +L   + NL    +  + +L  +K L+++ N +  + +    
Sbjct: 91  LALGAFSG-----LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEY 144

Query: 116 IANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-----NSLVKIETEEFPGLPEY 170
            +N+ +LE+L L  N  + S     L+   ++ +  LS     N +  I+   F  +   
Sbjct: 145 FSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--- 200

Query: 171 QLKALNLRNCSLHALPSFLLHQLD-LRFIDLSHN 203
           +LK L L    L ++P  +  +L  L+ I L  N
Sbjct: 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 18/233 (7%)

Query: 265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 324
             E +  NL +    V    + +E+  ++ +  ++++    +  Q +    +++ L L+ 
Sbjct: 23  FAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIK-SV--QGIQYLPNVTKLFLNG 77

Query: 325 NHLQGEVVFPNSTNLCWLYLNNNHFSGKIQD--GLSKATSLLELDLSNNMLYGQIPHWFG 382
           N L       N  NL WL+L+ N    K++D   L     L  L L +N +   I     
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGI-SDING-LV 131

Query: 383 NLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDN 442
           +L  L+ L +  N+++  +     L+ L  L +  N  +  I   L   + L  L L  N
Sbjct: 132 HLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKN 188

Query: 443 QFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGP 495
             S      +     L +L L   +      N   +L + N +  +      P
Sbjct: 189 HISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 52/237 (21%), Positives = 104/237 (43%), Gaps = 20/237 (8%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
               EL  + ++  + +++   +   +  L ++  L L+ N+LT ++   +AN+K+L +L
Sbjct: 40  VTQNELNSIDQIIANNSDI-KSVQG-IQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWL 95

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHA 184
            LD+N  +     +SLK+  KL+   L  N +  I       LP  QL++L L N  +  
Sbjct: 96  FLDENKVK---DLSSLKDLKKLKSLSLEHNGISDING--LVHLP--QLESLYLGNNKITD 148

Query: 185 LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 244
           + + L     L  + L  N++    P   L   TKL  LYL  N +S + +  +   +L 
Sbjct: 149 I-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHIS-DLRALAGLKNLD 203

Query: 245 RIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNN 301
            +++   +     P N    L    ++  ++    +  P  +S+    E  ++  + 
Sbjct: 204 VLELFSQECL-NKPINHQSNLVVPNTVKNTDG--SLVTPEIISDDGDYEKPNVKWHL 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 51/283 (18%), Positives = 95/283 (33%), Gaps = 67/283 (23%)

Query: 92  LSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFK 151
                     +L    +T         + S++ +  ++++ +   S   ++    +    
Sbjct: 20  DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLF 74

Query: 152 LS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFP 210
           L+ N L  I+                     L  L +       L ++ L  NK++    
Sbjct: 75  LNGNKLTDIK--------------------PLANLKN-------LGWLFLDENKVKDLSS 107

Query: 211 SWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLS 270
              L++  KL +L L +N +S               DI+               LP+L S
Sbjct: 108 ---LKDLKKLKSLSLEHNGIS---------------DINGLVH-----------LPQLES 138

Query: 271 LNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE 330
           L L  N   +   + +S + +L++L L  N  S ++    L+G   L  L LS NH+   
Sbjct: 139 LYLGNNK--ITDITVLSRLTKLDTLSLEDNQIS-DIV--PLAGLTKLQNLYLSKNHISDL 193

Query: 331 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML 373
                  NL  L L +     K  +  S       +  ++  L
Sbjct: 194 RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 46/238 (19%), Positives = 92/238 (38%), Gaps = 20/238 (8%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
                  + ++ +L K ++    +   + L  I  +  +++ +  ++Q  I  + ++  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 73

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHA 184
            L+ N          L N   L    L  N +  + +     L   +LK+L+L +  +  
Sbjct: 74  FLNGNKLT---DIKPLANLKNLGWLFLDENKVKDLSS--LKDLK--KLKSLSLEHNGISD 126

Query: 185 LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 244
           + + L+H   L  + L +NK+        L   TKLDTL L +N +S +    +    L 
Sbjct: 127 I-NGLVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQ 181

Query: 245 RIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNF 302
            + +S N  S  L    G  L  L  L L       +  +  S +    ++  +  + 
Sbjct: 182 NLYLSKNHIS-DLRALAG--LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 19/185 (10%)

Query: 311 LSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQD--GLSKATSLLELDL 368
                     +L    +   V      ++  +  NN+     I+   G+    ++ +L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNS----DIKSVQGIQYLPNVTKLFL 75

Query: 369 SNNMLYGQIPHWFG--NLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPG 426
           + N    ++       NL  L +L + EN++   + S  +L  L+ L +  N  +  I G
Sbjct: 76  NGN----KLTDIKPLANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHNGIS-DING 129

Query: 427 ALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILD 486
            L     L  L L +N+ +      ++  + L  L L  NQ+  +I   L  L+ L  L 
Sbjct: 130 -LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLY 184

Query: 487 LSYNK 491
           LS N 
Sbjct: 185 LSKNH 189

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
             +  L KL  L LSKN++   L   L+ L ++ VL+L S +      +  +N+     +
Sbjct: 172 VPLAGLTKLQNLYLSKNHI-SDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETE 162
              D +     +   + +    +   +   L +   E
Sbjct: 230 KNTDGSLV---TPEIISDDGDYEKPNVKWHLPEFTNE 263

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 68/358 (18%), Positives = 116/358 (32%), Gaps = 80/358 (22%)

Query: 74  LVELDLSKNNLYG----HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
           +    L  + +       +   L     +K + LS N +           ++  +LS   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIG---------TEAARWLS--- 53

Query: 130 NNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSF 188
                     ++ +   L++ + S     +++ E    L    L+AL L+   LH +   
Sbjct: 54  ---------ENIASKKDLEIAEFSDIFTGRVKDEIPEAL-RLLLQAL-LKCPKLHTV--- 99

Query: 189 LLHQLDLRFIDLSHNKLQGTFPSWL---LQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 245
                      LS N    T    L   L  +T L+ LYL NN L      P +   + R
Sbjct: 100 ----------RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG-----PQAGAKIAR 144

Query: 246 IDISHNKFSGQLPGNMGKILPELLSLNLSENGFE----VRIPSSMSEMKRLESLDLSSNN 301
             +     + +         P L S+    N  E         +    + L ++ +  N 
Sbjct: 145 A-LQELAVNKKAKNA-----PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198

Query: 302 FSGE----LPRQFLSGCFSLSFLSLSDNHLQGE------VVFPNSTNLCWLYLNNNHFSG 351
              E    L  + L+ C  L  L L DN           +   +  NL  L LN+   S 
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258

Query: 352 K----IQDGLSKA--TSLLELDLSNNMLYGQIPHWFG-----NLSGLQFLDISENQLS 398
           +    + D  SK     L  L L  N +               +  L FL+++ N+ S
Sbjct: 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 50/325 (15%), Positives = 101/325 (31%), Gaps = 65/325 (20%)

Query: 172 LKALNLRNCSL-----HALPSFLLHQLDLRFIDLSHNKLQGTFPSWL---LQNNTKLDTL 223
           ++  +L+  ++      ++ + LL    ++ I LS N +      WL   + +   L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 224 YLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVR-- 281
              +                          + +L        P+L ++ LS+N F     
Sbjct: 66  EFSDIFTGRVKDEIPE--------------ALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111

Query: 282 --IPSSMSEMKRLESLDLSSNNFSGE------------LPRQFLSGCFSLSFLSLSDNHL 327
             +   +S+   LE L L +N    +               +       L  +    N L
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 328 QGE------VVFPNSTNLCWLYLNNNHFSGK-----IQDGLSKATSLLELDLSNNMLYGQ 376
           +          F +   L  + +  N    +     + +GL+    L  LDL +N     
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231

Query: 377 ----IPHWFGNLSGLQFLDISENQLS-------GSVPSSFNLSSLRRLYMHMNAFNG--- 422
               +     +   L+ L +++  LS           S      L+ L +  N       
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291

Query: 423 -SIPGALRRS-SSLTVLDLRDNQFS 445
            ++   +      L  L+L  N+FS
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 61/351 (17%), Positives = 112/351 (31%), Gaps = 74/351 (21%)

Query: 67  GICELKKLVELDLSKNNLYG-----HLSPCLSNLTHIKVLDLSSNQL----------TGN 111
            + E   + E+ LS N + G      LS  +++   +++ + S                 
Sbjct: 27  VLLEDDSVKEIVLSGNTI-GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85

Query: 112 LQSVIANIKSLEYLSLDDNNF--EGSFSF-NSLKNHSKLQVFKLSNSLVKIETEEFPGLP 168
           L   +     L  + L DN F         + L  H+ L+   L N+   +  +    + 
Sbjct: 86  LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN--GLGPQAGAKI- 142

Query: 169 EYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQ---GTFPSWLLQNNTKLDTLYL 225
                A  L+     A+     +   LR I    N+L+       +   Q++  L T+ +
Sbjct: 143 -----ARALQEL---AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 194

Query: 226 LNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVR---- 281
           + N +      P     LL   +++                EL  L+L +N F       
Sbjct: 195 VQNGIR-----PEGIEHLLLEGLAYC--------------QELKVLDLQDNTFTHLGSSA 235

Query: 282 IPSSMSEMKRLESLDLSSNNFSGELPRQF---LSGCF--SLSFLSLSDNHLQ-------G 329
           +  ++     L  L L+    S           S      L  L L  N ++        
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295

Query: 330 EVVFPNSTNLCWLYLNNNHFS------GKIQDGLSKATSLLELDLSNNMLY 374
            V+     +L +L LN N FS       +I++  S        +L +    
Sbjct: 296 TVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEEL 346

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 53/287 (18%), Positives = 87/287 (30%), Gaps = 66/287 (22%)

Query: 268 LLSLNLSENGFEVR----IPSSMSEMKRLESLDLSSNNFSGELPR---QFLSGCFSLSFL 320
           +   +L  +         + + + E   ++ + LS N    E  R   + ++    L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 321 SLSDNHLQGEV------------VFPNSTNLCWLYLNNNHFSGK----IQDGLSKATSLL 364
             SD                          L  + L++N F       + D LSK T L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 365 ELDLSNNML-------------YGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-----N 406
            L L NN L                +     N   L+ +    N+L       +     +
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 407 LSSLRRLYMHMNAFN-----GSIPGALRRSSSLTVLDLRDNQF--------SGSIPIWIN 453
              L  + M  N          +   L     L VLDL+DN F        + ++  W N
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 454 EFSYLGILLLRGNQLK-------GNIPNQLCHLSLLNILDLSYNKFN 493
               L  L L    L         +  ++L ++ L   L L YN+  
Sbjct: 246 ----LRELGLNDCLLSARGAAAVVDAFSKLENIGLQT-LRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 47/292 (16%), Positives = 86/292 (29%), Gaps = 61/292 (20%)

Query: 72  KKLVELDLSKNNL----------YGHLSPCLSNLTHIKVLDLSSNQLTGN----LQSVIA 117
           K L   + S                 L   L     +  + LS N         L   ++
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 118 NIKSLEYLSLDDNNF------------EGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFP 165
               LE+L L +N              +        KN   L+      +  ++E     
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN--RLENGSMK 177

Query: 166 GLPEY-----QLKALNLRNCSL------HALPSFLLHQLDLRFIDLSHNKL--QGTFP-S 211
              +       L  + +    +      H L   L +  +L+ +DL  N     G+   +
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237

Query: 212 WLLQNNTKLDTLYLLNN--------SLSGNFQLPSSKHDLLRIDISHNKFSGQ----LPG 259
             L++   L  L L +         ++   F    +   L  + + +N+        L  
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKT 296

Query: 260 NMGKILPELLSLNLSENGFE------VRIPSSMSEMKRLESLDLSSNNFSGE 305
            + + +P+LL L L+ N F         I    S   R E  +L       +
Sbjct: 297 VIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTD 348

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 80.7 bits (199), Expect = 2e-16
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 12/160 (7%)

Query: 320 LSLSDNH---LQGEVVFPNSTNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYG 375
           L LS N+   L+ E      TNL  L L++NH +  I         +L  LDLS+N L+ 
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 376 QIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSL 434
                F +L  L+ L +  N +     ++F +++ L++LY+  N  +      ++  + L
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162

Query: 435 T---VLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGN 471
               +LDL  N+    +P  + +   L   +  G  L  N
Sbjct: 163 PKLMLLDLSSNKLK-KLP--LTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 52/183 (28%), Positives = 75/183 (40%), Gaps = 24/183 (13%)

Query: 58  VPLTVFVNTGICELKKLVELDLSKNNLYGHLSP--CLSNLTHIKVLDLSSNQLTGNLQS- 114
           VP ++   T          LDLS NNL   L      + LT++  L LS N L   + S 
Sbjct: 33  VPQSLPSYT--------ALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSE 82

Query: 115 VIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLK 173
               + +L YL L  N+   +       +   L+V  L  N +V ++   F  +   QL+
Sbjct: 83  AFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA--QLQ 139

Query: 174 ALNLRNCSLHALPSFLLHQLD----LRFIDLSHNKLQGTFPSWLLQNNTKL--DTLYLLN 227
            L L    +   P  L+   +    L  +DLS NKL+   P   LQ       + LYL N
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHN 198

Query: 228 NSL 230
           N L
Sbjct: 199 NPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.3 bits (172), Expect = 5e-13
 Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 15/163 (9%)

Query: 336 STNLCWLYLNNNHFSGKIQDGLSKA--TSLLELDLSNNMLYGQIPHW-FGNLSGLQFLDI 392
            +    L L++N+ S +++   +    T+L  L LS+N L   I    F  +  L++LD+
Sbjct: 38  PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDL 95

Query: 393 SENQLSGSVPS-SF-NLSSLRRLYMHMNAFNGSIP-GALRRSSSLTVLDLRDNQFSGSIP 449
           S N L  ++    F +L +L  L ++ N     +   A    + L  L L  NQ S   P
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFP 152

Query: 450 ----IWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLS 488
                  N+   L +L L  N+LK      L  L       L 
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 41/166 (24%), Positives = 62/166 (37%), Gaps = 17/166 (10%)

Query: 353 IQDGLSKATSLLELDLSNNMLYGQIPHW-FGNLSGLQFLDISENQLSGSVPSSF-NLSSL 410
           +   L   T+   LDLS+N L      W    L+ L  L +S N L+     +F  + +L
Sbjct: 33  VPQSLPSYTA--LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90

Query: 411 RRLYMHMNAFNGSIP-GALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLG---ILLLRGN 466
           R L +  N  + ++         +L VL L +N     +    N F  +     L L  N
Sbjct: 91  RYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDR--NAFEDMAQLQKLYLSQN 146

Query: 467 QLKGNIPNQ----LCHLSLLNILDLSYNKFNGPIPVCFANVTLWTL 508
           Q+    P +       L  L +LDLS NK           +  W  
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 49/212 (23%), Positives = 65/212 (30%), Gaps = 58/212 (27%)

Query: 194 DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKF 253
               +DLSHN L      W     T L +L L +N L+                IS   F
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---------------FISSEAF 84

Query: 254 SGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSG 313
                                              +  L  LDLSSN+    L     S 
Sbjct: 85  VP---------------------------------VPNLRYLDLSSNHLH-TLDEFLFSD 110

Query: 314 CFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDG----LSKATSLLELD 367
             +L  L L +NH+       F +   L  LYL+ N  S +         +K   L+ LD
Sbjct: 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLD 169

Query: 368 LSNNMLYGQIPHWFGNLSGL--QFLDISENQL 397
           LS+N L          L       L +  N L
Sbjct: 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.8 bits (187), Expect = 8e-16
 Identities = 31/207 (14%), Positives = 66/207 (31%), Gaps = 38/207 (18%)

Query: 265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 324
               L+  L ++        + ++M  L  + L++ N +             L+ +    
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT------------DLTGIE--- 63

Query: 325 NHLQGEVVFPNSTNLCWLYLNNNHFSGKIQD--GLSKATSLLELDLSNNMLYGQIPHWFG 382
                      + N+  L +NN        +   +S  ++L  L +    +         
Sbjct: 64  ----------YAHNIKDLTINNI----HATNYNPISGLSNLERLRIMGKDVTSDKIPNLS 109

Query: 383 NLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRD 441
            L+ L  LDIS +    S+ +    L  +  + +  N     I   L+    L  L+++ 
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQF 168

Query: 442 NQFSGSIPIWINEFSYLGILLLRGNQL 468
           +         I +F  L  L      +
Sbjct: 169 DGVHDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 26/164 (15%), Positives = 69/164 (42%), Gaps = 11/164 (6%)

Query: 70  ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
           ++  L  + L+  N+   L+  +    +IK L +++   T    + I+ + +LE L +  
Sbjct: 42  QMNSLTYITLANINV-TDLTG-IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMG 97

Query: 130 NNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSF 188
            +   S    +L   + L +  +S ++       +   LP  ++ +++L           
Sbjct: 98  KDV-TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP--KVNSIDLSYNGAITDIMP 154

Query: 189 LLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSG 232
           L    +L+ +++  + +        +++  KL+ LY  + ++ G
Sbjct: 155 LKTLPELKSLNIQFDGVHDYRG---IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 9/166 (5%)

Query: 328 QGEVVFP--NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLS 385
           Q  V  P           L  +  +   +  +    SL  + L+N  +            
Sbjct: 12  QDNVNIPDSTFKAYLNGLLGQSSTANITEAQM---NSLTYITLANINVTDLTG--IEYAH 66

Query: 386 GLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFS 445
            ++ L I+    +   P S  LS+L RL +            L   +SLT+LD+  +   
Sbjct: 67  NIKDLTINNIHATNYNPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 446 GSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491
            SI   IN    +  + L  N    +I   L  L  L  L++ ++ 
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDG 170

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 7/115 (6%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
             I  L  L  L +   ++     P LS LT + +LD+S +    ++ + I  +  +  +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRN 179
            L  N          LK   +L+   +  + +           P  +L  L   +
Sbjct: 142 DLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDY--RGIEDFP--KLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 33/236 (13%), Positives = 85/236 (36%), Gaps = 60/236 (25%)

Query: 70  ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 129
             K  +   L +++   +++   + +  +  + L++  +T +L   I    +++ L++++
Sbjct: 21  TFKAYLNGLLGQSST-ANITE--AQMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINN 75

Query: 130 NNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFL 189
            +     ++N +   S L+  ++      + +++ P L         L +          
Sbjct: 76  IHAT---NYNPISGLSNLERLRIMGK--DVTSDKIPNLS-------GLTS---------- 113

Query: 190 LHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDIS 249
                L  +D+SH+    +  +  +    K++++ L  N    +     +          
Sbjct: 114 -----LTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDIMPLKT---------- 157

Query: 250 HNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGE 305
                          LPEL SLN+  +G  V     + +  +L  L   S    G+
Sbjct: 158 ---------------LPELKSLNIQFDG--VHDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 573 TGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG 632
             L     ++T D    +  L+ +  L++SH+    SI   ++ L  + S+DLS+N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 633 QIPPQLTELNFLSNFNVSYNHLS 655
            I P L  L  L + N+ ++ + 
Sbjct: 151 DIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 60  LTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 119
               + T I  L K+  +DLS N     + P L  L  +K L++  + +       I + 
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD--YRGIEDF 180

Query: 120 KSLEYLSLDDNN 131
             L  L      
Sbjct: 181 PKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 572 MTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS 631
           +  L  +    T +  + I  LS +  L +    ++     +LS L  +  LD+SH+   
Sbjct: 68  IKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 632 GQIPPQLTELNFLSNFNVSYNHL 654
             I  ++  L  +++ ++SYN  
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
           L  +T LD S +     I ++I +L ++ +++LS+N     I   L  L  ++SL++  +
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFD 169

Query: 629 DLSGQIPPQLTELNFLSNFNVSYNHLSG 656
            +       + +   L+        + G
Sbjct: 170 GVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN 628
           +N +T +  +   +T D+ + I     I+ L +++   +   P  +S L  +E L +   
Sbjct: 43  MNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 629 DLSGQIPPQLTELNFLSNFNVSYNHLS 655
           D++    P L+ L  L+  ++S++   
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHD 125

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 383 NLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDN 442
                    + ++  +    +   ++SL  + +        + G +  + ++  L + + 
Sbjct: 21  TFKAYLNGLLGQSSTANITEA--QMNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNI 76

Query: 443 QFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFAN 502
             +   PI  +  S L  L + G  +  +    L  L+ L +LD+S++  +  I      
Sbjct: 77  HATNYNPI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 503 VT 504
           + 
Sbjct: 135 LP 136

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 21/176 (11%)

Query: 282 IPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNL 339
           IP+        + LDL SN  S  LP +       L  L L+DN LQ     +F    NL
Sbjct: 35  IPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87

Query: 340 CWLYLNNNHFS---GKIQDGLSKATSLLELDLSNNMLYGQIPH-WFGNLSGLQFLDISEN 395
             L++ +N        + D L    +L EL L  N L   +P   F +L+ L +L +  N
Sbjct: 88  ETLWVTDNKLQALPIGVFDQL---VNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYN 143

Query: 396 QLSGSVPS-SF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP 449
           +L  S+P   F  L+SL+ L ++ N       GA  + + L  L L +NQ    +P
Sbjct: 144 ELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 58/209 (27%), Positives = 80/209 (38%), Gaps = 38/209 (18%)

Query: 194 DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKF 253
           D + +DL  NKL  + PS      TKL  LYL +N L                 +    F
Sbjct: 38  DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ---------------TLPAGIF 81

Query: 254 SGQLPGNMGKILPELLSLNLSENGFEVRIPSSM-SEMKRLESLDLSSNNFSGELPRQFLS 312
                      L  L +L +++N  +  +P  +  ++  L  L L  N     LP     
Sbjct: 82  KE---------LKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLP----P 126

Query: 313 GCF----SLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL 366
             F     L++LSL  N LQ   + VF   T+L  L L NN      +    K T L  L
Sbjct: 127 RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186

Query: 367 DLSNNMLYGQIPHWFGNLSGLQFLDISEN 395
            L NN L       F +L  L+ L + EN
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 14/192 (7%)

Query: 42  SITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVL 101
           +    SV+ S +K + +P  +  +T         +LDL  N L    S     LT +++L
Sbjct: 15  NNNKNSVDCSSKKLTAIPSNIPADT--------KKLDLQSNKLSSLPSKAFHRLTKLRLL 66

Query: 102 DLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIE 160
            L+ N+L      +   +K+LE L + DN  + +           L   +L  N L  + 
Sbjct: 67  YLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLP 125

Query: 161 TEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQGTFPSWLLQNNTK 219
              F  L   +L  L+L    L +LP  +  +L  L+ + L +N+L+   P       T+
Sbjct: 126 PRVFDSLT--KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTE 182

Query: 220 LDTLYLLNNSLS 231
           L TL L NN L 
Sbjct: 183 LKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 53/232 (22%), Positives = 80/232 (34%), Gaps = 55/232 (23%)

Query: 96  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNS 155
              K LDL SN+L+         +  L  L L+D                        N 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND------------------------NK 72

Query: 156 LVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQGTFPSWLL 214
           L  +    F  L    L+ L + +  L ALP  +  QL +L  + L  N+L+ + P  + 
Sbjct: 73  LQTLPAGIFKELK--NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVF 129

Query: 215 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLS 274
            + TKL  L L  N      +L S         +    F           L  L  L L 
Sbjct: 130 DSLTKLTYLSLGYN------ELQS---------LPKGVFDK---------LTSLKELRLY 165

Query: 275 ENGFEVRIPSSM-SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN 325
            N  + R+P     ++  L++L L +N     +P         L  L L +N
Sbjct: 166 NNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 52/222 (23%), Positives = 75/222 (33%), Gaps = 55/222 (24%)

Query: 153 SNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQGTFPS 211
           SN L  + ++ F  L   +L+ L L +  L  LP+ +  +L +L  + ++ NKLQ   P 
Sbjct: 46  SNKLSSLPSKAFHRLT--KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPI 102

Query: 212 WLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSL 271
            +      L  L L  N L                 +    F           L +L  L
Sbjct: 103 GVFDQLVNLAELRLDRNQLK---------------SLPPRVFDS---------LTKLTYL 138

Query: 272 NLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG-- 329
           +L  N               L+SL      F        L+   SL  L L +N L+   
Sbjct: 139 SLGYN--------------ELQSL--PKGVFDK------LT---SLKELRLYNNQLKRVP 173

Query: 330 EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNN 371
           E  F   T L  L L+NN      +        L  L L  N
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 29/134 (21%)

Query: 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSS-FN-LSSLRRLYMHMN 418
               +LDL +N L       F  L+ L+ L +++N+L  ++P+  F  L +L  L++  N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 419 AFNGSIP-GALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLC 477
               ++P G   +  +L  L L  NQ   S+P  +  F                      
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRV--FD--------------------- 130

Query: 478 HLSLLNILDLSYNK 491
            L+ L  L L YN+
Sbjct: 131 SLTKLTYLSLGYNE 144

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 400 SVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI-NEFSYL 458
           ++PS+   +  ++L +  N  +     A  R + L +L L DN+   ++P  I  E   L
Sbjct: 30  AIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL 87

Query: 459 GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKF 492
             L +  N+L+         L  L  L L  N+ 
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 75.9 bits (187), Expect = 7e-15
 Identities = 49/281 (17%), Positives = 99/281 (35%), Gaps = 48/281 (17%)

Query: 213 LLQNNTKLDTLYLLNNSLSGN------FQLPSSKHDLLRIDISHNKFSGQLPGNMGKILP 266
                  + +L L  N+L             ++   +  +++S N    +    + +IL 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 267 E----LLSLNLSENGFEVRIPSSMSEM-----KRLESLDLSSNNFSGE----LPRQFLSG 313
                + SLNLS N    +    + +        +  LDL  N+FS +      + F + 
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 314 CFSLSFLSLSDNHLQ-------GEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKA-----T 361
             S++ L+L  N L         +++     N+  L L  N+ + K    L+K       
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 362 SLLELDLSNNMLYGQIPHWFG-----NLSGLQFLDISENQLSGSVPSSF-----NLSSLR 411
           S+  LDLS N+L  +             + +  L++  N L G    +      +L  L+
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 412 RLYMHMNAFNG-------SIPGALRRSSSLTVLDLRDNQFS 445
            +Y+  +           ++  A      + ++D    +  
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 49/342 (14%), Positives = 92/342 (26%), Gaps = 55/342 (16%)

Query: 87  HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA-----NIKSLEYLSLDDNNF--EGSFSFN 139
            +    S    +  LDLS N L       +         S+  L+L  N+   + S    
Sbjct: 13  PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV 72

Query: 140 SLKNHSKLQVFKLSNSLVKIETEEFPGL------PEYQLKALNLRNCSL-----HALPSF 188
            +       V  L+ S   +  +    L        + +  L+L                
Sbjct: 73  QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132

Query: 189 LLHQ-LDLRFIDLSHNKLQGT----FPSWLLQNNTKLDTLYLLNNSLSGNF------QLP 237
             +    +  ++L  N L           L      +++L L  N+L+          L 
Sbjct: 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA 192

Query: 238 SSKHDLLRIDISHNKFSGQLPGNMGKILPE----LLSLNLSENGFE----VRIPSSMSEM 289
           S    +  +D+S N    +    +  I       ++SLNL  N         +      +
Sbjct: 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252

Query: 290 KRLESLDLSSNNFSGELPRQF------LSGCFSLSFLSLSDNHLQGEVVFP-------NS 336
           K L+++ L  +        Q             +  +  +   +      P        S
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELS 312

Query: 337 TNLCWLYLNNNHFS-----GKIQDGLSKATSLLELDLSNNML 373
                  L N             + L+    L E   +   L
Sbjct: 313 GKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 73.5 bits (181), Expect = 7e-15
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 8/131 (6%)

Query: 320 LSLSDNH---LQGEVVFPNSTNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYG 375
           L L++N    L+   +F     L  +  +NN  +  I++G    A+ + E+ L++N L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN 95

Query: 376 QIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIP-GALRRSSS 433
                F  L  L+ L +  N+++     SF  LSS+R L ++ N    ++  GA     S
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHS 154

Query: 434 LTVLDLRDNQF 444
           L+ L+L  N F
Sbjct: 155 LSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 11/136 (8%)

Query: 293 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNH-- 348
             L L++N F+             L  ++ S+N +    E  F  ++ +  + L +N   
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 349 -FSGKIQDGLSKATSLLELDLSNNMLYGQIPH-WFGNLSGLQFLDISENQLSGSVPSSF- 405
               K+  GL    SL  L L +N +   + +  F  LS ++ L + +NQ++   P +F 
Sbjct: 95  NVQHKMFKGL---ESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 406 NLSSLRRLYMHMNAFN 421
            L SL  L +  N FN
Sbjct: 151 TLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 15/140 (10%)

Query: 96  THIKVLDLSSNQLTG-NLQSVIANIKSLEYLSLDDNNF----EGSFSFNSLKNHSKLQVF 150
            +   L L++N+ T      +   +  L  ++  +N      EG  +F        +   
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG--AFEGASG---VNEI 86

Query: 151 KLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQGT 208
            L+ N L  ++ + F GL    LK L LR+  +  + +     L  +R + L  N++  T
Sbjct: 87  LLTSNRLENVQHKMFKGLE--SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-T 143

Query: 209 FPSWLLQNNTKLDTLYLLNN 228
                      L TL LL N
Sbjct: 144 VAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 12/133 (9%)

Query: 361 TSLLELDLSNNMLYGQIPH-WFGNLSGLQFLDISENQLSGSVPSSFN-LSSLRRLYMHMN 418
               EL L+NN          F  L  L+ ++ S N+++     +F   S +  + +  N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 419 AFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI-NEFSYLGILLLRGNQLKGNIPN--- 474
                     +   SL  L LR N+ +  +        S + +L L  NQ+   +     
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAF 149

Query: 475 ----QLCHLSLLN 483
                L  L+LL 
Sbjct: 150 DTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 29/159 (18%)

Query: 194 DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKF 253
               + L++N+      + + +   +L  +   NN ++               DI    F
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT---------------DIEEGAF 77

Query: 254 SGQLPGNMGKILPELLSLNLSENGFEVRIPSSM-SEMKRLESLDLSSNNFSGELPRQFLS 312
            G            +  + L+ N  E  +   M   ++ L++L L SN  +  +      
Sbjct: 78  EG---------ASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFI 126

Query: 313 GCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHF 349
           G  S+  LSL DN +       F    +L  L L  N F
Sbjct: 127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
              + E+ L+ N L          L  +K L L SN++T         + S+  LSL DN
Sbjct: 80  ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139

Query: 131 NF----EGSFSFNSLKNHSKLQVF 150
                  G  +F++L + S L + 
Sbjct: 140 QITTVAPG--AFDTLHSLSTLNLL 161

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 74.3 bits (183), Expect = 7e-15
 Identities = 49/238 (20%), Positives = 90/238 (37%), Gaps = 23/238 (9%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
                L   V+ +L K ++   L      L+ ++  +  ++ +  +L   +    +L+ L
Sbjct: 13  FPDPGLANAVKQNLGKQSV-TDLVS-QKELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKEL 68

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHA 184
            L  N        + LK+ +KL+   ++ N L  +      G+P   L  L L N  L  
Sbjct: 69  HLSHNQIS---DLSPLKDLTKLEELSVNRNRLKNLN-----GIPSACLSRLFLDNNELRD 120

Query: 185 LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 244
               L+H  +L  + + +NKL+       L   +KL+ L L  N ++    L   K  + 
Sbjct: 121 T-DSLIHLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDLHGNEITNTGGLTRLKK-VN 175

Query: 245 RIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRI-PSSMSEMKRLESLDLSSNN 301
            ID++  K   +      K  PEL   N  ++     I P  +S         +    
Sbjct: 176 WIDLTGQKCVNEPV----KYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWEL 229

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 41/234 (17%)

Query: 265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 324
           L   +  NL +    V    S  E+  +++ +  ++N    L    +    +L  L LS 
Sbjct: 18  LANAVKQNLGKQ--SVTDLVSQKELSGVQNFNGDNSNIQ-SL--AGMQFFTNLKELHLSH 72

Query: 325 NHLQGEVVFPNSTNLCWLYLNNNHFSGKIQD--GLSKATSLLELDLSNNMLYGQIPHWFG 382
           N +       + T L  L +N N    ++++  G+     L  L L NN L  +      
Sbjct: 73  NQISDLSPLKDLTKLEELSVNRN----RLKNLNGIPS-ACLSRLFLDNNEL--RDTDSLI 125

Query: 383 NLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDN 442
           +L  L+ L I  N+L        ++  L  L                  S L VLDL  N
Sbjct: 126 HLKNLEILSIRNNKLK-------SIVMLGFL------------------SKLEVLDLHGN 160

Query: 443 QFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPI 496
           + + +  +       +  + L G +           L + N +     ++  P 
Sbjct: 161 EITNTGGL--TRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 41/255 (16%), Positives = 80/255 (31%), Gaps = 18/255 (7%)

Query: 171 QLKALNLRNCSLHALPSFLLHQLD-LRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNS 229
                NL   S+  L S    +L  ++  +  ++ +Q       +Q  T L  L+L +N 
Sbjct: 20  NAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG---MQFFTNLKELHLSHNQ 74

Query: 230 LSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEM 289
           +S +         L  + ++ N+               L  L L  N  E+R   S+  +
Sbjct: 75  IS-DLSPLKDLTKLEELSVNRNRLKNLNGIP----SACLSRLFLDNN--ELRDTDSLIHL 127

Query: 290 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHF 349
           K LE L + +N     +    L     L  L L  N +           + W+ L     
Sbjct: 128 KNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKC 184

Query: 350 SGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSS 409
             +      +      +   +       P++  N        +       +   S+  S 
Sbjct: 185 VNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELPVYTDEVSYKFSE 242

Query: 410 LRRLYMHMNAFNGSI 424
              +      F+G++
Sbjct: 243 YINVGETEAIFDGTV 257

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 16/150 (10%)

Query: 344 LNNNHFSGKIQD--GLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSV 401
                    I          + ++ +L    +   +      LSG+Q  +   + +  S+
Sbjct: 4   QRPT----PINQVFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL 56

Query: 402 PSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGIL 461
                 ++L+ L++  N  +  +   L+  + L  L +  N+      I     + L  L
Sbjct: 57  AGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGI---PSACLSRL 111

Query: 462 LLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491
            L  N+L+ +  + L HL  L IL +  NK
Sbjct: 112 FLDNNELR-DTDS-LIHLKNLEILSIRNNK 139

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 293 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFS 350
           E LDL S   +  L      G   L++L+L  N LQ     VF + T L  L L NN  +
Sbjct: 38  EKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96

Query: 351 GKIQDGL-SKATSLLELDLSNNMLYGQIPHW-FGNLSGLQFLDISENQLSGSVPSS-FN- 406
             +  G+    T L +L L  N L   +P   F  L+ L+ L ++ NQL  S+P+  F+ 
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDK 153

Query: 407 LSSLRRLYMHMNAFNGSIP-GALRRSSSLTVLDLRDNQF 444
           L++L+ L +  N    S+P GA  R   L  + L  NQF
Sbjct: 154 LTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 13/129 (10%)

Query: 365 ELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSS-FN-LSSLRRLYMHMNAFNG 422
           +LDL +  L       F  L+ L +L++  NQL  ++ +  F+ L+ L  L +  N    
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLAS 97

Query: 423 SIPGALRRSSSLTVLDLRDNQFSGSIPIWI-NEFSYLGILLLRGNQLKGNIPN------- 474
              G     + L  L L  NQ   S+P  + +  + L  L L  NQL+ +IP        
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLT 155

Query: 475 QLCHLSLLN 483
            L  LSL  
Sbjct: 156 NLQTLSLST 164

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 12/158 (7%)

Query: 76  ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGS 135
           +LDL    L          LT +  L+L  NQL      V  ++  L  L L +N    S
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-S 97

Query: 136 FS---FNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLH 191
                F+ L   ++L    L  N L  + +  F  L   +LK L L    L ++P+    
Sbjct: 98  LPLGVFDHL---TQLDKLYLGGNQLKSLPSGVFDRLT--KLKELRLNTNQLQSIPAGAFD 152

Query: 192 QL-DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNN 228
           +L +L+ + LS N+LQ + P        KL T+ L  N
Sbjct: 153 KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 10/136 (7%)

Query: 99  KVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFS---FNSLKNHSKLQVFKLSNS 155
           + LDL S  L     +    +  L +L+LD N  + + S   F+ L     L +   +N 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLA--NNQ 94

Query: 156 LVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQGTFPSWLL 214
           L  +    F  L   QL  L L    L +LPS +  +L  L+ + L+ N+LQ + P+   
Sbjct: 95  LASLPLGVFDHLT--QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF 151

Query: 215 QNNTKLDTLYLLNNSL 230
              T L TL L  N L
Sbjct: 152 DKLTNLQTLSLSTNQL 167

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 293 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFS 350
             + L  N     +P    S    L  + LS+N +       F    +L  L L  N  +
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 351 GKIQDGL-SKATSLLELDLSNNMLYGQIPHW-FGNLSGLQFLDISENQLSGSVPSSF-NL 407
            ++   L     SL  L L+ N +   +    F +L  L  L + +N+L      +F  L
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 408 SSLRRLYMHMNAFN 421
            +++ +++  N F 
Sbjct: 152 RAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 320 LSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQ 376
           + L  N ++      F     L  + L+NN  S ++         SL  L L  N +   
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 377 IPHWFGNLSGLQFLDISENQLSGSVPS-SF-NLSSLRRLYMHMNAFNGSIPGALRRSSSL 434
               F  L  LQ L ++ N+++  +   +F +L +L  L ++ N       G      ++
Sbjct: 96  PKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154

Query: 435 TVLDLRDNQF 444
             + L  N F
Sbjct: 155 QTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 8/112 (7%)

Query: 342 LYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPHW-FGNLSGLQFLDISENQLSG 399
           + L  N     I  G  S    L  +DLSNN +  ++    F  L  L  L +  N+++ 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 400 SVPSSF-NLSSLRRLYMHMNAFNGSIP-GALRRSSSLTVLDLRDNQFSGSIP 449
              S F  L SL+ L ++ N  N  +   A +   +L +L L DN+   +I 
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TIA 144

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 14/139 (10%)

Query: 96  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNF----EGSFSFNSLKNHSKLQVFK 151
             I  + L  N +        +  K L  + L +N          +F  L++   L    
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD--AFQGLRS---LNSLV 86

Query: 152 LS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQGTF 209
           L  N + ++    F GL    L+ L L    ++ L       L +L  + L  NKLQ T 
Sbjct: 87  LYGNKITELPKSLFEGLF--SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TI 143

Query: 210 PSWLLQNNTKLDTLYLLNN 228
                     + T++L  N
Sbjct: 144 AKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 30/159 (18%)

Query: 194 DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKF 253
            +  I L  N ++   P        KL  + L NN +S               +++ + F
Sbjct: 33  TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS---------------ELAPDAF 76

Query: 254 SGQLPGNMGKILPELLSLNLSENGFEVRIPSSM-SEMKRLESLDLSSNNFSGELPRQFLS 312
            G         L  L SL L  N     +P S+   +  L+ L L++N  +  L      
Sbjct: 77  QG---------LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQ 125

Query: 313 GCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHF 349
              +L+ LSL DN LQ   +  F     +  ++L  N F
Sbjct: 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 21/144 (14%)

Query: 56  SGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSSNQLTGNLQS 114
             +P   F        KKL  +DLS N +   L+P     L  +  L L  N++T   +S
Sbjct: 45  KVIPPGAFSP-----YKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKITELPKS 98

Query: 115 VIANIKSLEYLSLDDNNFEG--SFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQ 171
           +   + SL+ L L+ N        +F  L N   L +  L  N L  I    F  L    
Sbjct: 99  LFEGLFSLQLLLLNANKINCLRVDAFQDLHN---LNLLSLYDNKLQTIAKGTFSPLR--A 153

Query: 172 LKALNLRN------CSLHALPSFL 189
           ++ ++L        C L  L  +L
Sbjct: 154 IQTMHLAQNPFICDCHLKWLADYL 177

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 400 SVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI-NEFSYL 458
            +P++    ++  + +  N      PGA      L  +DL +NQ S  +          L
Sbjct: 25  EIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSL 82

Query: 459 GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491
             L+L GN++     +    L  L +L L+ NK
Sbjct: 83  NSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 23/191 (12%)

Query: 293 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGK 352
              +L   + +  + +  L+   S+  +  +++ ++         N+ +L L  N    K
Sbjct: 22  IKANLKKKSVTDAVTQNELN---SIDQIIANNSDIKSVQGIQYLPNVRYLALGGN----K 74

Query: 353 IQ-----DGLSKATSLLELDLSNNMLYGQIPH-WFGNLSGLQFLDISENQLSGSVPSS-F 405
           +        L   T+L  L L+ N L   +P+  F  L+ L+ L + ENQL  S+P   F
Sbjct: 75  LHDISALKEL---TNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVF 129

Query: 406 N-LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI-NEFSYLGILLL 463
           + L++L  L +  N       G   + ++LT LDL  NQ   S+P  + ++ + L  L L
Sbjct: 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRL 188

Query: 464 RGNQLKGNIPN 474
             NQLK ++P+
Sbjct: 189 YQNQLK-SVPD 198

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 10/162 (6%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
           L  + ++  + +++       +  L +++ L L  N+L     S +  + +L YL L  N
Sbjct: 40  LNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGN 95

Query: 131 NFEGSFSFNSLKNHSKLQVFKL-SNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFL 189
             + S         + L+   L  N L  +    F  L    L  LNL +  L +LP  +
Sbjct: 96  QLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT--NLTYLNLAHNQLQSLPKGV 152

Query: 190 LHQL-DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSL 230
             +L +L  +DLS+N+LQ + P  +    T+L  L L  N L
Sbjct: 153 FDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 54/254 (21%), Positives = 85/254 (33%), Gaps = 75/254 (29%)

Query: 153 SNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQ--GTFP 210
             S+               +  +   N  + ++     +  ++R++ L  NKL       
Sbjct: 28  KKSVTDAV----TQNELNSIDQIIANNSDIKSVQGIQ-YLPNVRYLALGGNKLHDISALK 82

Query: 211 SWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLS 270
                  T L  L L  N L                          LP  +   L  L  
Sbjct: 83  EL-----TNLTYLILTGNQLQ------------------------SLPNGVFDKLTNLKE 113

Query: 271 LNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF----SLSFLSLSDNH 326
           L L EN              +L+SL                 G F    +L++L+L+ N 
Sbjct: 114 LVLVEN--------------QLQSLP---------------DGVFDKLTNLTYLNLAHNQ 144

Query: 327 LQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPH-WFG 382
           LQ   + VF   TNL  L L+ N     + +G+  K T L +L L  N L   +P   F 
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFD 202

Query: 383 NLSGLQFLDISENQ 396
            L+ LQ++ + +N 
Sbjct: 203 RLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 20/170 (11%)

Query: 67  GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 126
           GI  L  +  L L  N L  H    L  LT++  L L+ NQL      V   + +L+ L 
Sbjct: 58  GIQYLPNVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115

Query: 127 LDDNNFEGSFS---FNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLH 183
           L +N  + S     F+ L N + L +    N L  +    F  L    L  L+L    L 
Sbjct: 116 LVENQLQ-SLPDGVFDKLTNLTYLNLA--HNQLQSLPKGVFDKLT--NLTELDLSYNQLQ 170

Query: 184 ALPSFLLHQL-DLRFIDLSHNKLQ----GTFPSWLLQNNTKLDTLYLLNN 228
           +LP  +  +L  L+ + L  N+L+    G F        T L  ++L +N
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF-----DRLTSLQYIWLHDN 215

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.3 bits (161), Expect = 2e-11
 Identities = 48/257 (18%), Positives = 87/257 (33%), Gaps = 10/257 (3%)

Query: 190 LHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDIS 249
           +   DL    L+    Q      +   +       LL +      +  ++   L R ++S
Sbjct: 299 VWLCDLPAASLNDQLPQ-HTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELS 357

Query: 250 HNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQ 309
             K    +  +  +   EL  L        + I   M  +  L     +   FS      
Sbjct: 358 VEKS--TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 415

Query: 310 FLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLS 369
            +    +      S   L+  V+     ++  L+L +   +  +   L +   +  LDLS
Sbjct: 416 PM--RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VL-CHLEQLLLVTHLDLS 471

Query: 370 NNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNG-SIPGAL 428
           +N L   +P     L  L+ L  S+N L  +V    NL  L+ L +  N     +    L
Sbjct: 472 HNRL-RALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNRLQQSAAIQPL 529

Query: 429 RRSSSLTVLDLRDNQFS 445
                L +L+L+ N   
Sbjct: 530 VSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.4 bits (143), Expect = 2e-09
 Identities = 48/327 (14%), Positives = 92/327 (28%), Gaps = 35/327 (10%)

Query: 2   RCEEIHSRINFRLCVQIIEHVWSPIIKKPQELWHKFFPKGSITDFSVEDSCRKTSGVPLT 61
            C  +       +  ++   +           W     +   +   + D    +    L 
Sbjct: 255 ACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLP 314

Query: 62  VFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKS 121
                 I       +  +   +         +    +   +LS  + T  LQS + + K 
Sbjct: 315 QHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKE 373

Query: 122 LEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCS 181
           L+ L  ++     +           L   +       ++  +            +LR+  
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD----DLRSKF 429

Query: 182 LHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKH 241
           L       +   D+R + L+H  L        L+    +  L L +N L           
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR---------- 476

Query: 242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNN 301
                          LP  +   L  L  L  S+N   +     ++ + RL+ L L +N 
Sbjct: 477 --------------ALPPALAA-LRCLEVLQASDN--ALENVDGVANLPRLQELLLCNNR 519

Query: 302 FSGELPRQFLSGCFSLSFLSLSDNHLQ 328
                  Q L  C  L  L+L  N L 
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 3e-08
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQI 634
           L  +  +LT  +   +  L  +  L+LSHN L  ++P +L+ L+ +E L  S N L   +
Sbjct: 446 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NV 501

Query: 635 PPQLTELNFLSNFNVSYNHLS 655
              +  L  L    +  N L 
Sbjct: 502 DG-VANLPRLQELLLCNNRLQ 521

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 16/153 (10%)

Query: 266 PELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN 325
            E + L+      E ++ +++S +K  + L LS+NN   ++    LSG  +L  LSL  N
Sbjct: 25  AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI--SSLSGMENLRILSLGRN 80

Query: 326 HLQG-EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHW---- 380
            ++  E +   +  L  L+++ N  +  +  G+ K  +L  L +SNN    +I +W    
Sbjct: 81  LIKKIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNN----KITNWGEID 134

Query: 381 -FGNLSGLQFLDISENQLSGSVPSSFNLSSLRR 412
               L  L+ L ++ N L      +   S  R 
Sbjct: 135 KLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 39/174 (22%)

Query: 73  KLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI---KSLEYLSLDD 129
           + VEL      +   +   LS L   K L LS+N +       I+++   ++L  LSL  
Sbjct: 26  EKVELHGMIPPI-EKMDATLSTLKACKHLALSTNNIE-----KISSLSGMENLRILSLGR 79

Query: 130 NNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSF 188
           N  +   + +++ +   L+   +S N +  +                      +  L + 
Sbjct: 80  NLIKKIENLDAVAD--TLEELWISYNQIASLS--------------------GIEKLVN- 116

Query: 189 LLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD 242
                 LR + +S+NK+        L    KL+ L L  N L  +++  ++  +
Sbjct: 117 ------LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 28/152 (18%)

Query: 67  GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 126
            +  LK    L LS NN+   +S  LS + ++++L L  N +   ++++ A   +LE L 
Sbjct: 43  TLSTLKACKHLALSTNNI-EKISS-LSGMENLRILSLGRNLIK-KIENLDAVADTLEELW 99

Query: 127 LDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEY-QLKALNL-------- 177
           +  N      S + ++    L+V  +SN+ +     E   L    +L+ L L        
Sbjct: 100 ISYNQIA---SLSGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYND 155

Query: 178 ----------RNCSLHALPSFLLHQLDLRFID 199
                     R   +  LP+  L +LD   +D
Sbjct: 156 YKENNATSEYRIEVVKRLPN--LKKLDGMPVD 185

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 6/129 (4%)

Query: 341 WLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGS 400
            L+        K+   LS   +   L LS N +  +I      +  L+ L +  N +   
Sbjct: 29  ELHGMIPPIE-KMDATLSTLKACKHLALSTNNI-EKISS-LSGMENLRILSLGRNLIKKI 85

Query: 401 VPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIW-INEFSYLG 459
                   +L  L++  N    S+ G + +  +L VL + +N+ +    I  +     L 
Sbjct: 86  ENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143

Query: 460 ILLLRGNQL 468
            LLL GN L
Sbjct: 144 DLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 36/194 (18%)

Query: 154 NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHN---KLQGTFP 210
           +++   E  +     E +   L+     +  + + L      + + LS N   K+     
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--- 65

Query: 211 SWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLS 270
              L     L  L L  N +                 I           N+  +   L  
Sbjct: 66  ---LSGMENLRILSLGRNLIK---------------KIE----------NLDAVADTLEE 97

Query: 271 LNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE 330
           L +S N     + S + ++  L  L +S+N  +       L+    L  L L+ N L  +
Sbjct: 98  LWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155

Query: 331 VVFPNSTNLCWLYL 344
               N+T+   + +
Sbjct: 156 YKENNATSEYRIEV 169

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.8 bits (152), Expect = 1e-10
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 333 FPNSTNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLD 391
            P + NL  LY+ N      ++   L     L  L +  + L    P  F     L  L+
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 392 ISENQLSGSVPSSFNLSSLRRLYMHMNAFN 421
           +S N L      +    SL+ L +  N  +
Sbjct: 87  LSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 355 DGLSKATSLLELDLSNNMLYGQIPHW-FGNLSGLQFLDISENQLSGSVPSSF-NLSSLRR 412
             L  A +L EL + N      +       L  L+ L I ++ L    P +F     L R
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 413 LYMHMNAFNGSIPGALRRSSSLTVLDLRDNQF 444
           L +  NA   S+     +  SL  L L  N  
Sbjct: 85  LNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.7 bits (136), Expect = 1e-08
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 281 RIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ--GEVVFPNSTN 338
                +   + L  L + +      L  + L G   L  L++  + L+      F  +  
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 339 LCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNML 373
           L  L L+ N     +     +  SL EL LS N L
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 25/132 (18%), Positives = 36/132 (27%), Gaps = 8/132 (6%)

Query: 377 IPHWFGNLSGLQFLDISENQLSGSVPS-SF-NLSSLRRLYMHMNAFNGSIPGALRRSSSL 434
             H       L  L I   Q    +       L  LR L +  +      P A   +  L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 435 TVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG 494
           + L+L  N         +   S L  L+L GN L     +  C L  L   +        
Sbjct: 83  SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL-----HCSCALRWLQRWEEEGLGGVP 136

Query: 495 PIPVCFANVTLW 506
              +        
Sbjct: 137 EQKLQCHGQGPL 148

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.7 bits (123), Expect = 5e-07
 Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 101 LDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKI 159
           L  + +    +L   +   ++L  L +++           L+   +L+   +  + L  +
Sbjct: 13  LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 160 ETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQ 206
             + F   P  +L  LNL   +L +L    +  L L+ + LS N L 
Sbjct: 72  APDAFHFTP--RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 227 NNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSM 286
           + +L     LP +++ L  + I + +    L     + L EL +L + ++G     P + 
Sbjct: 18  DGALDSLHHLPGAEN-LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 287 SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 328
               RL  L+LS N     L  + + G  SL  L LS N L 
Sbjct: 77  HFTPRLSRLNLSFNALE-SLSWKTVQG-LSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 9/102 (8%)

Query: 51  SCRKTSGV----PLTVFVNTGICELKKLVELDLSKNNLYGHLSP-CLSNLTHIKVLDLSS 105
               +SG+       +     +   + L EL +       HL    L  L  ++ L +  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 106 NQLTGNLQSVIANIKSLEYLSLDDNNF----EGSFSFNSLKN 143
           + L             L  L+L  N        +    SL+ 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE 107

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 7e-05
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 3/97 (3%)

Query: 585 DIPSEIGSLSEIRALNLSHNFLSGSIP-QSLSNLKMIESLDLSHNDLSGQIPPQ-LTELN 642
           D    +     +  L + +      +  + L  L  + +L +  + L   + P       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 643 FLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLC 679
            LS  N+S+N L   +    Q  +  E    GN   C
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 21/133 (15%), Positives = 38/133 (28%), Gaps = 25/133 (18%)

Query: 170 YQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNS 229
           +    L             L    +L  + + + +         L+   +L  L ++ + 
Sbjct: 8   HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 230 LSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEM 289
           L                 ++ + F            P L  LNLS N  E  +     + 
Sbjct: 68  LR---------------FVAPDAFHF---------TPRLSRLNLSFNALE-SLSWKTVQG 102

Query: 290 KRLESLDLSSNNF 302
             L+ L LS N  
Sbjct: 103 LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 569 LNYMTGLDFSCNELTGDIPSE-IGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSH 627
              +T L     +    +    +  L E+R L +  + L    P +      +  L+LS 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 628 NDLSGQIPPQLTELNFLSNFNVSYNHL 654
           N L   +  +  +   L    +S N L
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPL 115

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 50/235 (21%)

Query: 263 KILPELLSLNLSENGFEVRIPSSMSEM-----KRLESLDLSSNNFSGELPRQFLSGCFSL 317
           ++L  L  LNL+         + ++ +       L+ ++L+S        R  L      
Sbjct: 69  EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA 128

Query: 318 SFLSLSDNHLQ-------GEVVFPNSTNLCWLYLNNNHFSGK----IQDGLSKATSLLEL 366
             L L  N L         +++  +   +  L L+NN  +      + +GL+  TS+  L
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188

Query: 367 DLSNNMLYGQIPHWFGNLSGLQFL--DISENQLSGSVPSSFNLSSLRRLYMHMNAFNGS- 423
            L +  L        G+  GL+ L   +  N              L+ L +  N    + 
Sbjct: 189 SLLHTGL--------GD-EGLELLAAQLDRN------------RQLQELNVAYNGAGDTA 227

Query: 424 ---IPGALRRSSSLTVLDLRDNQFSGSIPIWINEF-------SYLGILLLRGNQL 468
              +  A R   SL +L L  N+ S      + +        + + + L  G  +
Sbjct: 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 60.5 bits (147), Expect = 8e-10
 Identities = 41/305 (13%), Positives = 78/305 (25%), Gaps = 59/305 (19%)

Query: 196 RFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGN------FQLPSSKHDLLRIDIS 249
             +D      +     +  +  + L  L L    ++          L S +H L  ++++
Sbjct: 50  ELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA 109

Query: 250 HNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEM-----KRLESLDLSSNNFSG 304
             +        +  +      L L  N         + ++      ++ +L LS+N  + 
Sbjct: 110 SCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA 169

Query: 305 ELPRQF---LSGCFSLSFLSLSDNHLQ-------GEVVFPNSTNLCWLYLNNNHFSGK-- 352
                    L+G  S++ LSL    L           +  N   L  L +  N       
Sbjct: 170 AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ-LQELNVAYNGAGDTAA 228

Query: 353 --IQDGLSKATSLLELDLSNNML----------YGQIPHWFGNLSGLQFLDISENQLS-- 398
             +     +  SL  L L  N L           G         + +         +S  
Sbjct: 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAE---GGARVVVSLTEGTAVSEY 285

Query: 399 GSVPSSFNLSSLRRLYMHMNAFNGS------------------IPGALRRSSSLTVLDLR 440
            SV  S    +L          +                        LR    +  L  +
Sbjct: 286 WSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQ 345

Query: 441 DNQFS 445
                
Sbjct: 346 LGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 43/256 (16%), Positives = 72/256 (28%), Gaps = 49/256 (19%)

Query: 71  LKKLVELDLSKNNL----YGHLSPCL-SNLTHIKVLDLSSNQLTGN----LQSVIANIKS 121
             +  +L L  N+L       L   L  +   I  L LS+N LT      L   +A   S
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184

Query: 122 LEYLSLDDNNF--EGSFSF-NSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLR 178
           + +LSL       EG       L  + +LQ                          LN+ 
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQE-------------------------LNVA 219

Query: 179 NCSL-----HALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGN 233
                     AL         L  + L  N+L       L       +    +  SL+  
Sbjct: 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEG 279

Query: 234 FQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKR-- 291
             +      +L     +     +          ELL  +L ++      P   +++ R  
Sbjct: 280 TAVSEYWSVILSEVQRNLNSWDRARVQRH---LELLLRDLEDSRGATLNPWRKAQLLRVE 336

Query: 292 --LESLDLSSNNFSGE 305
             + +L     +    
Sbjct: 337 GEVRALLEQLGSSGSP 352

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 342 LYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGS 400
           L LN+N       DGL  +   L++L+L  N L G  P+ F   S +Q L + EN++   
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-E 92

Query: 401 VPS-SFN-LSSLRRLYMHMNAFNGSIP-GALRRSSSLTVLDLRDNQF 444
           + +  F  L  L+ L ++ N  +  +  G+    +SLT L+L  N F
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 31/134 (23%), Positives = 46/134 (34%), Gaps = 31/134 (23%)

Query: 293 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFS 350
             L L+ N                L  L L  N L G     F  ++++  L L  N   
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 351 GKIQDGLSKATSLLELDLSNNMLYGQIPH-WFGNLSGLQFLDISENQLSGSVP-SSF-NL 407
                                    +I +  F  L  L+ L++ +NQ+S  V   SF +L
Sbjct: 92  -------------------------EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHL 125

Query: 408 SSLRRLYMHMNAFN 421
           +SL  L +  N FN
Sbjct: 126 NSLTSLNLASNPFN 139

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 57.3 bits (138), Expect = 1e-08
 Identities = 53/363 (14%), Positives = 114/363 (31%), Gaps = 36/363 (9%)

Query: 72  KKLVELDLSKNNL-------YGHLSPCLSNLTHIKVLDLSSNQLTGN-LQSVIANIKSLE 123
           +K+  L + +++           L+   ++L  +        +++   L+++  N +SL 
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 124 YLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLH 183
            + + D        F     + +       N  + +  +    +   +L  L L     +
Sbjct: 224 SVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283

Query: 184 ALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNN-SLSGNFQLPSSKHD 242
            +P        +R +DL +  L+      L+Q    L+ L   N     G   L      
Sbjct: 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343

Query: 243 LLRIDISHNKFSGQLPGNMGKI-----------LPELLSLNLSENGFE----VRIPSSMS 287
           L R+ I        +    G +             EL  + +  +         I + + 
Sbjct: 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK 403

Query: 288 EMKRLESLDLSSNNFSGELP-----RQFLSGCFSLSFLSLSDNHLQ-----GEVVFPNST 337
            +     + L       +LP     R  L GC  L   +               +   S 
Sbjct: 404 NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463

Query: 338 NLCWLYLNNNHFSGK-IQDGLSKATSLLELDLSNNMLYGQ-IPHWFGNLSGLQFLDISEN 395
           N+ W+ L     S + + +      +L +L++       + I      L  L++L +   
Sbjct: 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523

Query: 396 QLS 398
           + S
Sbjct: 524 RAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 38/310 (12%), Positives = 78/310 (25%), Gaps = 40/310 (12%)

Query: 171 QLKALNLRNCSL---HALPSFLLHQLDLRFIDLSHNKLQGTFPSWL---LQNNTKLDTLY 224
            L+ L L  CS      L S + H   ++ + +  +        WL    Q+NT L+ L 
Sbjct: 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN 198

Query: 225 LLNNSLS-----GNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFE 279
                 +         +  +   L+ + +   +    +     K    L          +
Sbjct: 199 FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV--GFFKAAANLEEFCGGSLNED 256

Query: 280 VRIPSSMSEMKRLESLDLSS-NNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFP---N 335
           + +P     +     L     +                +  L L    L+ E        
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316

Query: 336 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLS---------- 385
             NL  L   N      ++        L  L +        +    G +S          
Sbjct: 317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376

Query: 386 --GLQFLDISENQLSGS-----VPSSFNLSSLRRLYMH------MNAFNGSIPGALRRSS 432
              L+++ +  + ++            NL   R + +           +  +   L    
Sbjct: 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK 436

Query: 433 SLTVLDLRDN 442
            L        
Sbjct: 437 KLRRFAFYLR 446

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 365 ELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGS 423
           EL L  N     +P    N   L  +D+S N++S     SF N++ L  L +  N     
Sbjct: 35  ELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-C 92

Query: 424 IP-GALRRSSSLTVLDLRDNQFSGSIP 449
           IP        SL +L L  N  S  +P
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDIS-VVP 118

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 293 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFS 350
             L L  N F+  +P++  S    L+ + LS+N +       F N T L  L L+ N   
Sbjct: 34  TELYLDGNQFT-LVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 351 GKIQDGL-SKATSLLELDLSNNMLYGQIPH-WFGNLSGLQFLDISENQL 397
             I         SL  L L  N +   +P   F +LS L  L I  N L
Sbjct: 92  C-IPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPL 138

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.1 bits (135), Expect = 3e-08
 Identities = 41/304 (13%), Positives = 95/304 (31%), Gaps = 33/304 (10%)

Query: 171 QLKALNLRNCSLHALPSFL-----LHQLDLR---------FIDLSHNKLQGTFPSWLLQN 216
             + + + NC   +  + +     +  ++L+          +          +   +  +
Sbjct: 44  CRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSS 103

Query: 217 NTKLDTLYLLNNSLSGN--FQLPSSKHDLLRIDISH-NKFSGQLPGNMGKILPELLSLNL 273
            T L+ + L    ++ +    +  S  +   + +S    FS      +      L  L+L
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163

Query: 274 SENGFEVRIPSSMSEM----KRLESLDLS--SNNFSGELPRQFLSGCFSLSFLSLSD--N 325
            E+  +      +S        L SL++S  ++  S     + ++ C +L  L L+    
Sbjct: 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223

Query: 326 HLQGEVVFPNSTNLCWLYLN------NNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPH 379
             +   +   +  L  L                +   LS    L  L    + +   +P 
Sbjct: 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283

Query: 380 WFGNLSGLQFLDISENQLS--GSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVL 437
            +   S L  L++S   +     V        L+RL++     +  +         L  L
Sbjct: 284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLREL 343

Query: 438 DLRD 441
            +  
Sbjct: 344 RVFP 347

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 39/267 (14%), Positives = 80/267 (29%), Gaps = 31/267 (11%)

Query: 199 DLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLP 258
            +         P+ +++   K+ ++      L G         D   +      +     
Sbjct: 47  KVFIGNCYAVSPATVIRRFPKVRSV-----ELKGKPHFA----DFNLVPDGWGGYVYPWI 97

Query: 259 GNMGKILPELLSLNLSENGFEVRIPSSMSE-MKRLESLDLSS-NNFSGELPRQFLSGCFS 316
             M      L  + L            +++  K  + L LSS   FS +      + C +
Sbjct: 98  EAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRN 157

Query: 317 LSFLSLSDNHLQG------EVVFPNSTNLCWLYLNNNHFSGKIQDG-----LSKATSLLE 365
           L  L L ++ +               T+L  L ++    + ++        +++  +L  
Sbjct: 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC--LASEVSFSALERLVTRCPNLKS 215

Query: 366 LDLSNNMLYGQIPHWFGNLSGLQFLDIS-------ENQLSGSVPSSFNLSSLRRLYMHMN 418
           L L+  +   ++         L+ L           +  SG   +      LR L    +
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275

Query: 419 AFNGSIPGALRRSSSLTVLDLRDNQFS 445
           A    +P      S LT L+L      
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQ 302

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 45/262 (17%), Positives = 88/262 (33%), Gaps = 32/262 (12%)

Query: 77  LDLSKNNLYGHLSPCL----SNLTHIKVLDLSSNQLTGN-LQSVIANIKSLEYLSLDDNN 131
            +L  +   G++ P +    S+ T ++ + L    +T + L+ +  + K+ + L L    
Sbjct: 82  FNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141

Query: 132 FEGSFSFNSL-KNHSKLQVFKLSNSLVKIETEE-FPGLPEY--QLKALNLRNCSLH---- 183
              +    ++      L+   L  S V   +       P+    L +LN+   +      
Sbjct: 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFS 201

Query: 184 ALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 243
           AL   +    +L+ + L+         + LLQ   +L+ L     +      + S     
Sbjct: 202 ALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260

Query: 244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFS 303
           L                      EL  L+   +     +P+  S   RL +L+LS     
Sbjct: 261 L------------------SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302

Query: 304 GELPRQFLSGCFSLSFLSLSDN 325
                + L  C  L  L + D 
Sbjct: 303 SYDLVKLLCQCPKLQRLWVLDY 324

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 48/268 (17%), Positives = 87/268 (32%), Gaps = 19/268 (7%)

Query: 71  LKKLVELDLSK------NNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEY 124
             +L EL           ++Y  LS  LS    ++ L    + +   L +V +    L  
Sbjct: 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293

Query: 125 LSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEY--QLKALNLRNC-S 181
           L+L     +       L    KLQ   + +    IE      L      L+ L +     
Sbjct: 294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLD---YIEDAGLEVLASTCKDLRELRVFPSEP 350

Query: 182 LHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKL--DTLYLLNNSLSGNFQLPSS 239
               P+  L +  L  + +   KL+      +L    ++    L  +  +     +    
Sbjct: 351 FVMEPNVALTEQGLVSVSMGCPKLE-----SVLYFCRQMTNAALITIARNRPNMTRFRLC 405

Query: 240 KHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSS 299
             +    D    +      G + +   +L  L+LS    +       +  K++E L ++ 
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAF 465

Query: 300 NNFSGELPRQFLSGCFSLSFLSLSDNHL 327
              S       LSGC SL  L + D   
Sbjct: 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPF 493

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSS-FN-LSSLRRLYMHMN 418
           T+   L L +N +    P  F +L  L+ L +  NQL  ++P   F+ L+ L  L +  N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN 98

Query: 419 AFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLK 469
                      R   L  L +  N+ +  +P  I   ++L  L L  NQLK
Sbjct: 99  QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 38/134 (28%), Positives = 51/134 (38%), Gaps = 14/134 (10%)

Query: 270 SLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF----SLSFLSLSDN 325
            L L +N      P     +  L+ L L SN     LP     G F     L+ L L  N
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALP----VGVFDSLTQLTVLDLGTN 98

Query: 326 HLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHW-FG 382
            L      VF    +L  L++  N  + ++  G+ + T L  L L  N L   IPH  F 
Sbjct: 99  QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIPHGAFD 156

Query: 383 NLSGLQFLDISENQ 396
            LS L    +  N 
Sbjct: 157 RLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 99  KVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFS---FNSLKNHSKLQVFKLS-N 154
           ++L L  NQ+T     V  ++ +L+ L L  N    +     F+SL     L V  L  N
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ---LTVLDLGTN 98

Query: 155 SLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLL 214
            L  + +  F  L    LK L +    L  LP  +     L  + L  N+L+ + P    
Sbjct: 99  QLTVLPSAVFDRLV--HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK-SIPHGAF 155

Query: 215 QNNTKLDTLYLLNN 228
              + L   YL  N
Sbjct: 156 DRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 400 SVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI-NEFSYL 458
           SVP+    ++ + LY+H N      PG      +L  L L  NQ   ++P+ + +  + L
Sbjct: 33  SVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90

Query: 459 GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491
            +L L  NQL          L  L  L +  NK
Sbjct: 91  TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 292 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSG 351
           +  L L +   +        +   +L FLSL +  L      P    L  L L+ N   G
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG 85

Query: 352 KIQDGLSKATSLLELDLSNNML--YGQIPHWFGNLSGLQFLDISENQLS 398
            +     K  +L  L+LS N L     +      L  L+ LD+   +++
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSV--IANIKSLE 123
           + + +L KL +L+LS+N ++G L      L ++  L+LS N+L  ++ ++  +  ++ L+
Sbjct: 65  SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLK 123

Query: 124 YLSLDDN 130
            L L + 
Sbjct: 124 SLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 17/139 (12%)

Query: 69  CELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLT--GNLQSVIANIKSLEYLS 126
             +++LV LD  K+N  G +    +   +++ L L +  L    NL      +  L+ L 
Sbjct: 24  AAVRELV-LDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLE 77

Query: 127 LDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIET-EEFPGLPEYQLKALNLRNCSLHA 184
           L +N   G       +    L    LS N L  I T E    L    LK+L+L NC +  
Sbjct: 78  LSENRIFGGLD-MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE--CLKSLDLFNCEVTN 134

Query: 185 LP---SFLLHQL-DLRFID 199
           L      +   L  L ++D
Sbjct: 135 LNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 6/116 (5%)

Query: 118 NIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALN 176
              ++  L LD+                 L+   L    L+ +     P LP  +LK L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLP--KLKKLE 77

Query: 177 LRNCSLHALPSFLLHQLD-LRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLS 231
           L    +      L  +L  L  ++LS NKL+       L+    L +L L N  ++
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 6/125 (4%)

Query: 155 SLVKIETEEFPGLPEYQLKALNLRNCSLH--ALPSFLLHQLDLRFIDLSHNKLQGTFPSW 212
            + +    E        ++ L L NC  +   +       ++L F+ L +  L       
Sbjct: 9   DMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-- 66

Query: 213 LLQNNTKLDTLYLLNNSLSGNFQ-LPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSL 271
            L    KL  L L  N + G    L     +L  +++S NK          K L  L SL
Sbjct: 67  -LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125

Query: 272 NLSEN 276
           +L   
Sbjct: 126 DLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 27/128 (21%)

Query: 364 LELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGS 423
           L LD   +   G+I         L+FL +    L        ++S+L +L          
Sbjct: 29  LVLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-------SVSNLPKLP--------- 71

Query: 424 IPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKG-NIPNQLCHLSLL 482
                     L  L+L +N+  G + +   +   L  L L GN+LK  +    L  L  L
Sbjct: 72  ---------KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECL 122

Query: 483 NILDLSYN 490
             LDL   
Sbjct: 123 KSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 9/115 (7%)

Query: 215 QNNTKLDTLYLLN--NSLSGNFQLPSSKHDLLRIDISHNKFS--GQLPGNMGKILPELLS 270
           +    +  L L N  ++      L +   +L  + + +        LP      LP+L  
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPK-----LPKLKK 75

Query: 271 LNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN 325
           L LSEN     +     ++  L  L+LS N        + L     L  L L + 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 1e-07
 Identities = 100/653 (15%), Positives = 182/653 (27%), Gaps = 197/653 (30%)

Query: 7   HSRINF-----RLCVQIIEHVWSPIIKKPQELWH-KFFPKGSITDFSVEDSCRKTSGVPL 60
           H  ++F     +   + I  V+        +    +  PK  ++   ++        V  
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 61  TVFVNTGICE-----LKKLVELDLSKNNLYGHL---------SPCLSNLTHIKVLDLSSN 106
           T+ +   +       ++K VE  L  N  Y  L          P +    +I+  D   N
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRIN--YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 107 -------------QLTGNLQSVIANIKSLEYLSLD----------------DNNFEGSFS 137
                        Q    L+  +  ++  + + +D                    +    
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 138 FN----SLKN-HSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQ 192
           F     +LKN +S   V ++   L+      +    +     + LR  S+ A    LL  
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAELRRLLKS 240

Query: 193 -------LDLRFIDLSHNKLQGTF--PSWLL---QNNTKLDTL------YLLNNSLSGNF 234
                  L L   ++ + K    F     +L   +     D L      ++  +  S   
Sbjct: 241 KPYENCLLVLL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 235 QLPSSKHDLLR--IDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEM--- 289
                K  LL   +D         LP  +    P  LS+          I  S+ +    
Sbjct: 299 TPDEVK-SLLLKYLDCR----PQDLPREVLTTNPRRLSI----------IAESIRDGLAT 343

Query: 290 ----------KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTN- 338
                     K    ++ S N       R+         F  LS        VFP S + 
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--------FDRLS--------VFPPSAHI 387

Query: 339 ----LC--WLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDI 392
               L   W  +  +     + + L K  SL+E                  +  +  L++
Sbjct: 388 PTILLSLIWFDVIKS-DVMVVVNKLHKY-SLVEKQ-PKESTIS--------IPSIY-LEL 435

Query: 393 SENQLSGSVPSSFNLSSL-RRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIW 451
                        N  +L R +  H N         L       +    D  F       
Sbjct: 436 KVKLE--------NEYALHRSIVDHYNIPKTFDSDDL-------IPPYLDQYF------- 473

Query: 452 INEFSYLG-----------------ILL-LR--GNQLKGNIPNQLCHLSLLNIL-DLS-Y 489
              +S++G                 + L  R    +++ +        S+LN L  L  Y
Sbjct: 474 ---YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530

Query: 490 NKF---NGPIPVCFANVTLWTLGQAAGSFVLWETT---QR-ISTEFEAYYNST 535
             +   N P      N  L  L +   + +  + T   +  +  E EA +   
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 4e-07
 Identities = 49/323 (15%), Positives = 92/323 (28%), Gaps = 90/323 (27%)

Query: 462 LLRGNQL--KGNIPNQLCHLSLLNIL-DLSYNKF--------------------NGPIPV 498
           L   NQ+  K N+     +L L   L +L   K                     +  +  
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 499 CFANVTLW-TLGQAAGSFVLWETTQRISTEFEAYYNSTLELSE-VKHFYKASGQRGIEFM 556
                  W  L        + E  Q++  + +  + S  + S  +K    +        +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 557 TKKRYES--------YKGDILNYMTGLDFSCNEL--TGDIPSEIGSLSEIRALNLSHNFL 606
             K YE+              N     + SC  L  T         LS     ++S +  
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAF---NLSCKILLTTRFK-QVTDFLSAATTTHISLDHH 294

Query: 607 SGSI--PQSLSNLKMIESLDLSHNDLSGQIPPQLTELN---------FLSNFNVSYNHLS 655
           S ++   +  S L  ++ LD    DL    P ++   N          + +   ++++  
Sbjct: 295 SMTLTPDEVKSLL--LKYLDCRPQDL----PREVLTTNPRRLSIIAESIRDGLATWDNW- 347

Query: 656 GPTPNAGQFANFDEQNYGGNSGLCGPRINKSCTTVLEPPETPSDGAEEDESAVDMVAFYW 715
                  +  N D+             I +S   VLEP E                  + 
Sbjct: 348 -------KHVNCDKLT----------TIIESSLNVLEPAE--------------YRKMFD 376

Query: 716 SFV--ASSVTVILGLFAILWVNS 736
                  S  +   L +++W + 
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDV 399

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 6e-07
 Identities = 71/415 (17%), Positives = 136/415 (32%), Gaps = 96/415 (23%)

Query: 1   LRCEEIHSRIN-------FRLCVQIIEHVWSPIIKKPQELWHKFFPKGSITDFSVEDSCR 53
           LR   I + +        +  C+ ++ +V +       + W+ F       +     SC+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNA------KAWNAF-------NL----SCK 267

Query: 54  ---KTSGVPLTVFVNTGICELKKLVELD--LSKNNLYGHLSPCLSNLTHIKVLDLSSNQL 108
               T    +T F++        L      L+ + +   L   L      +  DL    L
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL----DCRPQDLPREVL 323

Query: 109 TGN--LQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSN----SLVKIETE 162
           T N    S+IA        S+ D          +  N   +   KL+     SL  +E  
Sbjct: 324 TTNPRRLSIIA-------ESIRDGL-------ATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 163 EFPGLPEYQLKALNLRNCSLHALPSFLLHQL--------DLRFIDLSHNKLQGTFPSWLL 214
           E+  +  +    L++   S H +P+ LL  +         +  ++  H          L+
Sbjct: 370 EYRKM--F--DRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYS-------LV 417

Query: 215 QNNTKLDTLYLLNNSLSGNFQLPS--SKHDLLRIDISHNKFSGQLPGNMGKILPELLSLN 272
           +   K  T+ + +  L    +L +  + H  +   + H         +   I P L    
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSI---VDHYNIPKTFDSD-DLIPPYL---- 469

Query: 273 LSENGFEVRIPSSMSEMKRLESLDLSSN---NFS---GELPRQFLSGCFSLSFLS-LSDN 325
             +  F   I   +  ++  E + L      +F     ++     +   S S L+ L   
Sbjct: 470 --DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 326 HLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGL--SKATSLLELDLS--NNMLYGQ 376
                 +  N      L      F  KI++ L  SK T LL + L   +  ++ +
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 15/131 (11%)

Query: 271 LNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE 330
           + L+    E    +  +   R   LDL        +     +       +  SDN ++  
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKL 57

Query: 331 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKA-TSLLELDLSNNMLYGQIPHW-----FGNL 384
             FP    L  L +NNN    +I +GL +A   L EL L+NN     +          +L
Sbjct: 58  DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNN----SLVELGDLDPLASL 112

Query: 385 SGLQFLDISEN 395
             L +L I  N
Sbjct: 113 KSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 5/111 (4%)

Query: 311 LSGCFSLSFLSLSDNHLQG-EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLS 369
            +       L L    +   E +         +  ++N    K+ DG      L  L ++
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVN 72

Query: 370 NNMLYGQIPHWFGNLSGLQFLDISENQLS--GSVPSSFNLSSLRRLYMHMN 418
           NN +          L  L  L ++ N L   G +    +L SL  L +  N
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 20/130 (15%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
           L +   +D S N +   L      L  +K L +++N++    + +   +  L  L L +N
Sbjct: 41  LDQFDAIDFSDNEI-RKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

Query: 131 NFEGSFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFL 189
           +       + L +   L    +  N +   +               + R   ++ +P   
Sbjct: 99  SLVELGDLDPLASLKSLTYLCILRNPVTNKK---------------HYRLYVIYKVPQ-- 141

Query: 190 LHQLDLRFID 199
           +  LD + + 
Sbjct: 142 VRVLDFQKVK 151

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 7/114 (6%)

Query: 214 LQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFS--GQLPGNMGKILPELLSL 271
             N  +   L L    +     L ++      ID S N+       P      L  L +L
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL-----LRRLKTL 69

Query: 272 NLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN 325
            ++ N            +  L  L L++N+         L+   SL++L +  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 32/153 (20%)

Query: 77  LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSF 136
           + L+   +    +   +N    + LDL   ++   ++++ A +   + +   DN      
Sbjct: 2   VKLTAELI--EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE----- 53

Query: 137 SFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL-DL 195
                              + K++   FP L   +LK L + N  +  +   L   L DL
Sbjct: 54  -------------------IRKLDG--FPLLR--RLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 196 RFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNN 228
             + L++N L        L +   L  L +L N
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 355 DGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLY 414
              + A    ELDL    +   I +    L     +D S+N++   +     L  L+ L 
Sbjct: 13  AQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLL 70

Query: 415 MHMNAFNGSIPGALRRSSSLTVLDLRDNQFS 445
           ++ N       G  +    LT L L +N   
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 67  GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSV--IANIKSLEY 124
           G   L++L  L ++ N +          L  +  L L++N L   L  +  +A++KSL Y
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTY 117

Query: 125 LSLDDN 130
           L +  N
Sbjct: 118 LCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 34/134 (25%)

Query: 171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHN---KLQGTFPSWLLQNNTKLDTLYLLN 227
           + + L+LR   +  + +          ID S N   KL G           +L TL + N
Sbjct: 20  RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG------FPLLRRLKTLLVNN 73

Query: 228 NSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGF-EVRIPSSM 286
           N +                         ++   + + LP+L  L L+ N   E+     +
Sbjct: 74  NRIC------------------------RIGEGLDQALPDLTELILTNNSLVELGDLDPL 109

Query: 287 SEMKRLESLDLSSN 300
           + +K L  L +  N
Sbjct: 110 ASLKSLTYLCILRN 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 1/105 (0%)

Query: 292 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSG 351
           ++ L L ++  +             L FLS  +  L      P    L  L L++N  SG
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSG 78

Query: 352 KIQDGLSKATSLLELDLSNNMLYG-QIPHWFGNLSGLQFLDISEN 395
            ++    K  +L  L+LS N +           L  L+ LD+   
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 67  GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 126
              E ++L  L      L   ++  L  L  +K L+LS N+++G L+ +     +L +L+
Sbjct: 37  LTDEFEELEFLSTINVGL-TSIA-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94

Query: 127 LDDNNFEGSFSFNSLKNHSKLQVFKLSN 154
           L  N  +   +   LK    L+   L N
Sbjct: 95  LSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 335 NSTNLCWLYLNNNHFS-GKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDIS 393
             +++  L L+N+  + GK++    +   L  L   N  L   I +    L+ L+ L++S
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSIAN-LPKLNKLKKLELS 72

Query: 394 ENQLSGSVPSSF-NLSSLRRLYMHMNAFNG-SIPGALRRSSSLTVLDLRDN 442
           +N++SG +        +L  L +  N     S    L++  +L  LDL + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 316 SLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG 375
            L   +   N  + E +      L +L   N   +  I   L K   L +L+LS+N + G
Sbjct: 21  ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSG 78

Query: 376 QIPHWFGNLSGLQFLDISENQLS--GSVPSSFNLSSLRRLYMHMN 418
            +         L  L++S N++    ++     L +L+ L +   
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSV--IANIKSLE 123
             + +L KL +L+LS N + G L        ++  L+LS N++  +L ++  +  +++L+
Sbjct: 58  ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLK 116

Query: 124 YLSLDDN 130
            L L + 
Sbjct: 117 SLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 9/115 (7%)

Query: 215 QNNTKLDTLYLLNNSLS--GNFQLPSSKHDLLRIDISHNKFS--GQLPGNMGKILPELLS 270
           +  + +  L L N+  +      L     +L  +   +   +    LP      L +L  
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK-----LNKLKK 68

Query: 271 LNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN 325
           L LS+N     +     +   L  L+LS N        + L    +L  L L + 
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 27/125 (21%), Positives = 41/125 (32%), Gaps = 12/125 (9%)

Query: 158 KIETEEFPGLPEYQLKALNLRNCSLH--ALPSFLLHQLDLRFIDLSHN---KLQGTFPSW 212
           +    E        +K L L N   +   L        +L F+   +     +       
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN----- 59

Query: 213 LLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSL 271
            L    KL  L L +N +SG    L     +L  +++S NK          K L  L SL
Sbjct: 60  -LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118

Query: 272 NLSEN 276
           +L   
Sbjct: 119 DLFNC 123

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 6/117 (5%)

Query: 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSS-FN-LSSLRRLYMHMN 418
                LDL  N L       F  L+ L  L +  N+L  S+P+  FN L+SL  L +  N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86

Query: 419 AFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWI-NEFSYLGILLLRGNQLKGNIPN 474
                  G   + + L  L L  NQ   S+P  + ++ + L  L L  NQLK ++P+
Sbjct: 87  QLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 43/135 (31%), Positives = 59/135 (43%), Gaps = 15/135 (11%)

Query: 270 SLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF----SLSFLSLSDN 325
            L+L  N  +        E+  L  L L  N     LP    +G F    SL++L+LS N
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLP----NGVFNKLTSLTYLNLSTN 86

Query: 326 HLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPH-WF 381
            LQ     VF   T L  L LN N     + DG+  K T L +L L  N L   +P   F
Sbjct: 87  QLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVF 144

Query: 382 GNLSGLQFLDISENQ 396
             L+ LQ++ + +N 
Sbjct: 145 DRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 112 LQSVIANI-KSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKL-SNSLVKIETEEFPGLPE 169
             SV   I     YL L+ N+ + S         + L    L  N L  +    F  L  
Sbjct: 19  RTSVPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77

Query: 170 YQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNN 228
             L  LNL    L +LP+ +  +L  L+ + L+ N+LQ + P  +    T+L  L L  N
Sbjct: 78  --LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQN 134

Query: 229 SL 230
            L
Sbjct: 135 QL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 10/134 (7%)

Query: 99  KVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFS---FNSLKNHSKLQVFKLSNS 155
             LDL +N L      V   + SL  L L  N  + S     FN L + + L +   +N 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS--TNQ 87

Query: 156 LVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL-DLRFIDLSHNKLQGTFPSWLL 214
           L  +    F  L   QLK L L    L +LP  +  +L  L+ + L  N+L+ + P  + 
Sbjct: 88  LQSLPNGVFDKLT--QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVF 144

Query: 215 QNNTKLDTLYLLNN 228
              T L  ++L +N
Sbjct: 145 DRLTSLQYIWLHDN 158

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 9/105 (8%)

Query: 320 LSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQ 376
           L L  N LQ     VF   T L  L L+ N     + DG+  K T L  L L  N L   
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKL-QS 90

Query: 377 IPH-WFGNLSGLQFLDISENQLSGSVPS-SF-NLSSLRRLYMHMN 418
           +P+  F  L+ L+ L +  NQL  SVP   F  L+SL+++++H N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSS-FN-LSSLRRLYMHMN 418
           +S   L+L +N L       F  L+ L  L +S+NQ+  S+P   F+ L+ L  LY+H N
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHEN 86

Query: 419 AFNGSIP-GALRRSSSLTVLDLRDNQFSGSIP 449
               S+P G   + + L  L L  NQ   S+P
Sbjct: 87  KLQ-SLPNGVFDKLTQLKELALDTNQLK-SVP 116

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 5e-05
 Identities = 30/171 (17%), Positives = 58/171 (33%), Gaps = 28/171 (16%)

Query: 171 QLKALNLRNC---SLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLN 227
            L  L ++     S+   P   L  L++    L  + ++    S  L N  KL  LY+  
Sbjct: 173 LLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGS-DLPNLEKLV-LYVGV 230

Query: 228 NSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMS 287
                +  +   +                         P L  L + +   +  +     
Sbjct: 231 EDYGFDGDMNVFRPLFS-----------------KDRFPNLKWLGIVDAEEQNVVVEMFL 273

Query: 288 E---MKRLESLDLSSNNFSGELPRQFLSGC---FSLSFLSLSDNHLQGEVV 332
           E   + +LE++D+S+   + E  R  L        L F+++  N+L  E+ 
Sbjct: 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 7e-04
 Identities = 10/76 (13%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 572 MTGLDFSCNELTGDIPSEIGS---LSEIRALNLSHNFLSGS----IPQSLSNLKMIESLD 624
           +  L     E    +         L ++  +++S   L+      +   +  +K ++ ++
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313

Query: 625 LSHNDLSGQIPPQLTE 640
           + +N LS ++  +L +
Sbjct: 314 MKYNYLSDEMKKELQK 329

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 20/133 (15%), Positives = 42/133 (31%), Gaps = 22/133 (16%)

Query: 335 NSTNLCWLYLNN-NHFSGK----IQDGLSKATSLLELDLSNNMLYGQIPHWFGNL----S 385
           N  +L  + LNN  +          + L   T + +  +        +      +    +
Sbjct: 34  NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN 93

Query: 386 GLQFLDISENQLSGSVPSSF------NLSSLRRLYMHMNAFNGSIPGA------LRRSSS 433
            L+ L++  N +SGS   +       N +SL  L +   +              L ++++
Sbjct: 94  TLKSLNVESNFISGSGILALVEALQSN-TSLIELRIDNQSQPLGNNVEMEIANMLEKNTT 152

Query: 434 LTVLDLRDNQFSG 446
           L        Q   
Sbjct: 153 LLKFGYHFTQQGP 165

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 14/100 (14%), Positives = 39/100 (39%), Gaps = 12/100 (12%)

Query: 72  KKLVELDLSKNNLYG-----HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI----KSL 122
             L E++L+             +  L   T++K   +   +    +   +A +     +L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 123 EYLSLDDNNF--EGSFSF-NSLKNHSKLQVFKLSNSLVKI 159
           + L+++ N     G  +   +L++++ L   ++ N    +
Sbjct: 96  KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	764
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.54
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.29
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.24
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.01
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.96
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.77
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.41
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.99
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.74
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.33
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.99
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.55

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.3e-75  Score=684.22  Aligned_cols=640  Identities=32%  Similarity=0.462  Sum_probs=484.9

Q ss_pred             CcccccCCccccCCCCccee---------------ee---cc-----------------------ccccCCCCCcEEECc
Q 045580           42 SITDFSVEDSCRKTSGVPLT---------------VF---VN-----------------------TGICELKKLVELDLS   80 (764)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~---------------~~---~~-----------------------~~~~~l~~L~~L~Ls   80 (764)
                      .+.+|..+..||.|.||.|.               +.   +|                       ++++++++|++|||+
T Consensus        29 ~l~~W~~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls  108 (768)
T 3rgz_A           29 LLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLS  108 (768)
T ss_dssp             SSTTCCTTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECC
T ss_pred             cccCCCCCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECC
Confidence            56788767778899998873               22   22                       467777888888888


Q ss_pred             CCcccccCch--hhcCCCCCCEEECCCCCCCCcchhhh-hCCCCCCEEECcCCCCCCCCChhh--hccCCCCcEEEccCC
Q 045580           81 KNNLYGHLSP--CLSNLTHIKVLDLSSNQLTGNLQSVI-ANIKSLEYLSLDDNNFEGSFSFNS--LKNHSKLQVFKLSNS  155 (764)
Q Consensus        81 ~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~--l~~l~~L~~L~l~~~  155 (764)
                      +|.+++.+|.  .++++++|++|+|++|.+++..|..+ .++++|++|++++|++++..+...  +.++++|++|++++|
T Consensus       109 ~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  188 (768)
T 3rgz_A          109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN  188 (768)
T ss_dssp             SSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred             CCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence            8888877777  78888888888888888777666654 677888888888888775554321  677888888888877


Q ss_pred             CCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCC
Q 045580          156 LVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQ  235 (764)
Q Consensus       156 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  235 (764)
                      .+.....   ...+++|++|++++|.+...+..+..+++|++|++++|++++.+|..+ .++++|++|++++|.+.+..+
T Consensus       189 ~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~  264 (768)
T 3rgz_A          189 KISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIP  264 (768)
T ss_dssp             EEESCCB---CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCC
T ss_pred             cccccCC---cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccC
Confidence            7643322   245567999999999995543338889999999999999988777765 488999999999998886543


Q ss_pred             CCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCC
Q 045580          236 LPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF  315 (764)
Q Consensus       236 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~  315 (764)
                      .. .+++|++|++++|++++.+|..++..+++|++|++++|.+++..|..++.+++|++|++++|.+.+.+|...+..++
T Consensus       265 ~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~  343 (768)
T 3rgz_A          265 PL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR  343 (768)
T ss_dssp             CC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred             cc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence            33 67788888888888887888777664578888888888888778888888888888888888887777776566777


Q ss_pred             CCCEEEeeccccccee--ec-------------------------CC--CCCCceEEcccccCCCcccccccCCCCCCEE
Q 045580          316 SLSFLSLSDNHLQGEV--VF-------------------------PN--STNLCWLYLNNNHFSGKIQDGLSKATSLLEL  366 (764)
Q Consensus       316 ~L~~L~l~~n~l~~~~--~~-------------------------~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  366 (764)
                      +|++|++++|.+++..  .+                         ..  +++|++|++++|.+++.+|..+..+++|++|
T Consensus       344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  423 (768)
T 3rgz_A          344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL  423 (768)
T ss_dssp             TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred             CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence            7777777777665321  11                         11  5568888888888887888888888899999


Q ss_pred             eCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCC
Q 045580          367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFS  445 (764)
Q Consensus       367 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  445 (764)
                      ++++|.+++.+|..+..+++|+.|++++|.+++.+|..+ .+++|+.|++++|++++.+|..+..+++|++|++++|+++
T Consensus       424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  503 (768)
T 3rgz_A          424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT  503 (768)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence            999998888888888889999999999999988888877 7889999999999998888888888999999999999999


Q ss_pred             CcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCC-ccccccccccc
Q 045580          446 GSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAG-SFVLWETTQRI  524 (764)
Q Consensus       446 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~-~~~~~~~~~~~  524 (764)
                      +.+|.+++.+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..+............. ...........
T Consensus       504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (768)
T 3rgz_A          504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM  583 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred             CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence            88899999999999999999999988998899999999999999999999988776644221110000 00000000000


Q ss_pred             hhh------HHHhhh-hhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccc
Q 045580          525 STE------FEAYYN-STLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIR  597 (764)
Q Consensus       525 ~~~------~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~  597 (764)
                      ...      ...+.. ....+..+.......  .............+  ..++.|+.|||++|+++|.+|.+++++++|+
T Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--l~~~~~~g~~~~~~--~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~  659 (768)
T 3rgz_A          584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCN--ITSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF  659 (768)
T ss_dssp             CTTCCSSEEEEECTTCCGGGGGGGGGTCCSC--TTSCEEEEECCCSC--SSSBCCCEEECCSSCCBSCCCGGGGGCTTCC
T ss_pred             cccccccccccccccccchhhhccccccccc--cccceecccCchhh--hccccccEEECcCCcccccCCHHHhccccCC
Confidence            000      000000 000000000000000  00000000000011  2367899999999999999999999999999


Q ss_pred             eecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCCC
Q 045580          598 ALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSG  677 (764)
Q Consensus       598 ~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~  677 (764)
                      .|+|++|+++|.+|..++++++|++||||+|+++|.+|..+..+++|++||+++|+++|.||.++||.++...+|.||++
T Consensus       660 ~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~  739 (768)
T 3rgz_A          660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPG  739 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTE
T ss_pred             EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCC
Q 045580          678 LCGPRINKSCTTVL  691 (764)
Q Consensus       678 lc~~~~~~~c~~~~  691 (764)
                      +||+|+. .|....
T Consensus       740 Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          740 LCGYPLP-RCDPSN  752 (768)
T ss_dssp             EESTTSC-CCCSCC
T ss_pred             hcCCCCc-CCCCCc
Confidence            9999986 885443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.8e-63  Score=583.89  Aligned_cols=596  Identities=28%  Similarity=0.378  Sum_probs=327.4

Q ss_pred             CCCCcEEECcCCccccc---CchhhcCC-----------------------CCCCEEECCCCCCCCcchh--hhhCCCCC
Q 045580           71 LKKLVELDLSKNNLYGH---LSPCLSNL-----------------------THIKVLDLSSNQLTGNLQS--VIANIKSL  122 (764)
Q Consensus        71 l~~L~~L~Ls~n~l~~~---~~~~l~~l-----------------------~~L~~L~Ls~n~l~~~~~~--~~~~l~~L  122 (764)
                      -.+++.|||+++.+.|.   +|.++.++                       ++|++|||++|.++|.+|.  .++++++|
T Consensus        49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  128 (768)
T 3rgz_A           49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL  128 (768)
T ss_dssp             TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred             CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence            36788899998888876   55555444                       5555555555555544444  45555555


Q ss_pred             CEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccC--CCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEc
Q 045580          123 EYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEF--PGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDL  200 (764)
Q Consensus       123 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~L  200 (764)
                      ++|++++|.+.+.+|...+.++++|++|++++|.+.......  ....+++|++|++++|.+..... +..+++|++|++
T Consensus       129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~L  207 (768)
T 3rgz_A          129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDV  207 (768)
T ss_dssp             CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEEC
T ss_pred             CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEEC
Confidence            555555555544444333344555555555554442111100  01122345555555555422111 144555566666


Q ss_pred             cCCCCCCccchHHhhcCCCCCEEEccCCcCccCC-CCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCC
Q 045580          201 SHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFE  279 (764)
Q Consensus       201 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~  279 (764)
                      ++|++++.+|.  +.++++|++|++++|.+++.. .....+++|++|++++|.+.+.+|..   .+++|++|++++|.++
T Consensus       208 s~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~  282 (768)
T 3rgz_A          208 SSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFT  282 (768)
T ss_dssp             CSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEE
T ss_pred             cCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccC
Confidence            66655554444  345566666666666555321 12235556666666666665555543   2566666666666666


Q ss_pred             ccCCccccCC-CCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee---ecCCCCCCceEEcccccCCCcccc
Q 045580          280 VRIPSSMSEM-KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLNNNHFSGKIQD  355 (764)
Q Consensus       280 ~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~L~~n~l~~~~~~  355 (764)
                      +.+|..+... ++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+..   .+..+++|++|++++|.+++.+|.
T Consensus       283 ~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~  361 (768)
T 3rgz_A          283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE  361 (768)
T ss_dssp             ESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred             CccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence            6666666654 777777777777776666654 56777777777777776443   366777777777777777766666


Q ss_pred             cccCCC-CCCEEeCcCCccCCCccccccC--CCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCC
Q 045580          356 GLSKAT-SLLELDLSNNMLYGQIPHWFGN--LSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRS  431 (764)
Q Consensus       356 ~l~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~  431 (764)
                      .+..++ +|++|++++|.+++.+|..+..  +++|++|++++|.+++.+|..+ .+++|+.|++++|.+++.+|..+..+
T Consensus       362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  441 (768)
T 3rgz_A          362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL  441 (768)
T ss_dssp             THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC
Confidence            555544 5555555555544433333333  3344444444444444444433 34444444444444444444444444


Q ss_pred             CCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhccccc
Q 045580          432 SSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQA  511 (764)
Q Consensus       432 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~  511 (764)
                      ++|+.|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..++.++.+.....
T Consensus       442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  521 (768)
T 3rgz_A          442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL  521 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence            44444444444444444444444444444444444444444444444444444444444444444444433332211110


Q ss_pred             CCcccc--c--------------cccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccc----------ccc
Q 045580          512 AGSFVL--W--------------ETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYE----------SYK  565 (764)
Q Consensus       512 ~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~  565 (764)
                      ......  .              ...+.+....+.....   ....... .........+.......          .+.
T Consensus       522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  597 (768)
T 3rgz_A          522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK---QSGKIAA-NFIAGKRYVYIKNDGMKKECHGAGNLLEFQ  597 (768)
T ss_dssp             CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT---TTTCBCC-STTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred             CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc---ccchhhh-hccccccccccccccccccccccccccccc
Confidence            000000  0              0000000000000000   0000000 00000011111110000          000


Q ss_pred             ------ccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCccccc
Q 045580          566 ------GDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLT  639 (764)
Q Consensus       566 ------~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~  639 (764)
                            ...+..+..++++.|.+.|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|||++|+++|.+|+.+.
T Consensus       598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~  677 (768)
T 3rgz_A          598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG  677 (768)
T ss_dssp             TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHh
Confidence                  01233455567777888888888888899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeEeccCCccccCCCCC-CCCCCCCccccCCCCC
Q 045580          640 ELNFLSNFNVSYNHLSGPTPNA-GQFANFDEQNYGGNSG  677 (764)
Q Consensus       640 ~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~~~~~~gn~~  677 (764)
                      .+++|++||+|+|+++|.+|.. ..+..++...+.+|+.
T Consensus       678 ~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            9999999999999999999976 5677777788888874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.3e-55  Score=514.34  Aligned_cols=562  Identities=20%  Similarity=0.210  Sum_probs=358.8

Q ss_pred             ceeeeccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCCh
Q 045580           59 PLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSF  138 (764)
Q Consensus        59 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  138 (764)
                      .+++..+..|.++++|++|+|++|.+++..|.+|+++++|++|+|++|++++..+.+|+++++|++|++++|+++ .++.
T Consensus        36 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~  114 (680)
T 1ziw_A           36 QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKN  114 (680)
T ss_dssp             CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCS
T ss_pred             CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccCh
Confidence            334444556777777777777777777777777777777777777777777655556777777777777777776 3443


Q ss_pred             hhhccCCCCcEEEccCCCCCCc-cccCCCCCCCCccEEEcCCCCCCCccHh-h--hCCCCccEEEccCCCCCCccchHHh
Q 045580          139 NSLKNHSKLQVFKLSNSLVKIE-TEEFPGLPEYQLKALNLRNCSLHALPSF-L--LHQLDLRFIDLSHNKLQGTFPSWLL  214 (764)
Q Consensus       139 ~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l--~~~~~L~~L~Ls~n~l~~~~~~~~~  214 (764)
                      ..++++++|++|++++|.+... ...+  ..+++|++|++++|.++.++.. +  ..+++|++|++++|++++..|.. +
T Consensus       115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~  191 (680)
T 1ziw_A          115 NPFVKQKNLITLDLSHNGLSSTKLGTQ--VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-F  191 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCSCCCCCSS--SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG-G
T ss_pred             hHccccCCCCEEECCCCcccccCchhh--cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh-h
Confidence            5567777777777777765322 2222  2345677777777777665432 2  24467777777777776444433 3


Q ss_pred             hcCCCCCEEEccCCcCccCCCC----CCCCCCccEEEccCCCCCCCCChhHhhcC--CCCcEEEcccCCCCccCCccccC
Q 045580          215 QNNTKLDTLYLLNNSLSGNFQL----PSSKHDLLRIDISHNKFSGQLPGNMGKIL--PELLSLNLSENGFEVRIPSSMSE  288 (764)
Q Consensus       215 ~~l~~L~~L~L~~n~l~~~~~~----~~~~~~L~~L~ls~n~l~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~l~~  288 (764)
                      ..+++|+.|++.++.+......    ....++|+.|++++|.+.+..|..+.. +  ++|++|++++|.+++..|..|+.
T Consensus       192 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~  270 (680)
T 1ziw_A          192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFAW  270 (680)
T ss_dssp             GGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTTTT
T ss_pred             hhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCcccccC
Confidence            4566666666666554321000    002367788888888777655555543 4  34888888888887777777888


Q ss_pred             CCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccce------e-----ecCCCCCCceEEcccccCCCcccccc
Q 045580          289 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE------V-----VFPNSTNLCWLYLNNNHFSGKIQDGL  357 (764)
Q Consensus       289 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~------~-----~~~~~~~L~~L~L~~n~l~~~~~~~l  357 (764)
                      +++|++|++++|.+.+..|.. +.++++|+.|++++|...+.      .     .+..+++|++|++++|.+++..+..|
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  349 (680)
T 1ziw_A          271 LPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF  349 (680)
T ss_dssp             CTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT
T ss_pred             cccccEeeCCCCccCccChhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh
Confidence            888888888888877544444 46778888888876644321      1     45667788888888888887777777


Q ss_pred             cCCCCCCEEeCcCCccCCCc--cccccC--CCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccc-hhhcCC
Q 045580          358 SKATSLLELDLSNNMLYGQI--PHWFGN--LSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIP-GALRRS  431 (764)
Q Consensus       358 ~~l~~L~~L~L~~n~l~~~~--~~~~~~--l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~-~~~~~~  431 (764)
                      ..+++|++|++++|.+....  ...|..  .++|+.|++++|++++..|..+ .+++|+.|++++|.+.+.+| ..+.++
T Consensus       350 ~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l  429 (680)
T 1ziw_A          350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL  429 (680)
T ss_dssp             TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTC
T ss_pred             ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCc
Confidence            78888888888877654321  122322  2477788888888777777666 67778888888887776554 567777


Q ss_pred             CCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCC--ccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhccc
Q 045580          432 SSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLK--GNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLG  509 (764)
Q Consensus       432 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~  509 (764)
                      ++|++|++++|++++..+..+..+++|+.|++++|.+.  +..|..+..+++|++|++++|++++..|..+..++.+...
T Consensus       430 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L  509 (680)
T 1ziw_A          430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL  509 (680)
T ss_dssp             TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEE
Confidence            78888888888777666777777778888888877765  4567777777788888888887776666555544322111


Q ss_pred             ccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCcc
Q 045580          510 QAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSE  589 (764)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~  589 (764)
                      ......        +..              +....  .        ......  .-..+++|+.|+|++|+++...+..
T Consensus       510 ~Ls~N~--------l~~--------------~~~~~--~--------~~~~~~--~~~~l~~L~~L~L~~N~l~~i~~~~  555 (680)
T 1ziw_A          510 DLQHNN--------LAR--------------LWKHA--N--------PGGPIY--FLKGLSHLHILNLESNGFDEIPVEV  555 (680)
T ss_dssp             ECCSSC--------CGG--------------GGSTT--S--------TTSCCC--TTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             eCCCCC--------ccc--------------cchhh--c--------cCCcch--hhcCCCCCCEEECCCCCCCCCCHHH
Confidence            000000        000              00000  0        000000  0012456777777777777333345


Q ss_pred             ccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCccccc-CCCCCCeEeccCCccccCCCC
Q 045580          590 IGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLT-ELNFLSNFNVSYNHLSGPTPN  660 (764)
Q Consensus       590 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~~p~  660 (764)
                      |+++++|+.|+|++|++++..+..+.++++|+.|+|++|++++..|..+. .+++|+.+++++|++.|.|+.
T Consensus       556 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             cccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            67777777777777777755555566777777777777777766666665 566777777777777777665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.7e-55  Score=507.30  Aligned_cols=532  Identities=21%  Similarity=0.222  Sum_probs=356.7

Q ss_pred             CcceeeeccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCC
Q 045580           57 GVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSF  136 (764)
Q Consensus        57 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  136 (764)
                      +..+....|..+.++++|++|+|++|.+++..+.+|+++++|++|+|++|++++..|..|+++++|++|++++|.+++..
T Consensus        58 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  137 (680)
T 1ziw_A           58 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK  137 (680)
T ss_dssp             SSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccC
Confidence            34445556778999999999999999999777778999999999999999999888889999999999999999998655


Q ss_pred             ChhhhccCCCCcEEEccCCCCCC-ccccCCCCCCCCccEEEcCCCCCCCc-cHhhhCCCCccEEEccCCCCCCccchHHh
Q 045580          137 SFNSLKNHSKLQVFKLSNSLVKI-ETEEFPGLPEYQLKALNLRNCSLHAL-PSFLLHQLDLRFIDLSHNKLQGTFPSWLL  214 (764)
Q Consensus       137 ~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~l-p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~  214 (764)
                      + ..+.++++|++|++++|.+.. ....+.....++|++|++++|.++.+ |..+..+.+|+.|+++++.+.+.....+.
T Consensus       138 ~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~  216 (680)
T 1ziw_A          138 L-GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC  216 (680)
T ss_dssp             C-CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHH
T ss_pred             c-hhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHH
Confidence            4 568899999999999998743 23333334456799999999999665 55677777777777777665432222111


Q ss_pred             h--cCCCCCEEEccCCcCccCCCCC-CCC--CCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCC
Q 045580          215 Q--NNTKLDTLYLLNNSLSGNFQLP-SSK--HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEM  289 (764)
Q Consensus       215 ~--~l~~L~~L~L~~n~l~~~~~~~-~~~--~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l  289 (764)
                      .  ..++|++|++++|.+++..... ..+  ++|++|++++|++.+..|..+. .+++|++|++++|.+.+..|..+..+
T Consensus       217 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l  295 (680)
T 1ziw_A          217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGL  295 (680)
T ss_dssp             HHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEECTTTTTTC
T ss_pred             HHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCccChhhhcCC
Confidence            0  2366777777777666532111 122  3377777777776644444443 36677777777777766666667777


Q ss_pred             CCCCEEECCCCccccc-----Cc---hhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCc--ccccc
Q 045580          290 KRLESLDLSSNNFSGE-----LP---RQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGK--IQDGL  357 (764)
Q Consensus       290 ~~L~~L~Ls~n~l~~~-----~p---~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~--~~~~l  357 (764)
                      ++|++|++++|...+.     +|   ...+..+++|++|++++|.+.+..  .+..+++|++|++++|.+...  ....+
T Consensus       296 ~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f  375 (680)
T 1ziw_A          296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF  375 (680)
T ss_dssp             TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTT
T ss_pred             CCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhh
Confidence            7777777766543321     11   122355666777777777666544  456666677777766654322  11222


Q ss_pred             cC--CCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCC-Ccc-cCCCccEEeccCCccccccchhhcCCCC
Q 045580          358 SK--ATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVP-SSF-NLSSLRRLYMHMNAFNGSIPGALRRSSS  433 (764)
Q Consensus       358 ~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~  433 (764)
                      ..  .++|+.|++++|++++..|..|..+++|+.|++++|.+++.++ ..+ .+++|+.|++++|++.+..+..|..+++
T Consensus       376 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  455 (680)
T 1ziw_A          376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS  455 (680)
T ss_dssp             GGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTT
T ss_pred             cccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcc
Confidence            22  2466666776666666666666666667777777666665444 233 5666666777666666666666666666


Q ss_pred             CCEEEccCCcCC--CcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChh--------hhcc
Q 045580          434 LTVLDLRDNQFS--GSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVC--------FANV  503 (764)
Q Consensus       434 L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~--------~~~l  503 (764)
                      |+.|++++|.++  +.+|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..        +.++
T Consensus       456 L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l  535 (680)
T 1ziw_A          456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL  535 (680)
T ss_dssp             CCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTC
T ss_pred             cccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCC
Confidence            666666666664  345666666666666666666666555555666666666666666665432211        1111


Q ss_pred             hhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccc---cccccccEEEcccC
Q 045580          504 TLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKG---DILNYMTGLDFSCN  580 (764)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~LdLs~N  580 (764)
                      +.+...                                             .+..+....++.   ..++.|+.|||++|
T Consensus       536 ~~L~~L---------------------------------------------~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N  570 (680)
T 1ziw_A          536 SHLHIL---------------------------------------------NLESNGFDEIPVEVFKDLFELKIIDLGLN  570 (680)
T ss_dssp             TTCCEE---------------------------------------------ECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCEE---------------------------------------------ECCCCCCCCCCHHHcccccCcceeECCCC
Confidence            111000                                             000000000110   23568999999999


Q ss_pred             cccccCCccccCccccceecccccccccccCcccc-CCCCCCEEECcCCcCcccCc
Q 045580          581 ELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLS-NLKMIESLDLSHNDLSGQIP  635 (764)
Q Consensus       581 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~LdLs~N~l~~~ip  635 (764)
                      ++++..+..+.++++|+.|+|++|++++..|..++ .+++|+.|++++|++.+..+
T Consensus       571 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            99977777789999999999999999988888887 78999999999999997654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.4e-55  Score=518.08  Aligned_cols=539  Identities=19%  Similarity=0.186  Sum_probs=432.4

Q ss_pred             CCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcc-hhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcE
Q 045580           71 LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNL-QSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQV  149 (764)
Q Consensus        71 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~  149 (764)
                      .+++++|||++|.+++..+.+|.++++|++|+|++|.+.+.+ |.+|.++++|++|+|++|++.+..| ..+.++++|++
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~  101 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-DAFQGLFHLFE  101 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-TSSCSCSSCCC
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-hHccCCcccCE
Confidence            478999999999999999999999999999999999766665 7899999999999999999985544 67999999999


Q ss_pred             EEccCCCCCCc-cccCCCCCCCCccEEEcCCCCCCCc--cHhhhCCCCccEEEccCCCCCCccchHHhhcC--CCCCEEE
Q 045580          150 FKLSNSLVKIE-TEEFPGLPEYQLKALNLRNCSLHAL--PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNN--TKLDTLY  224 (764)
Q Consensus       150 L~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~l--p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~  224 (764)
                      |++++|.+... ........+++|++|++++|.+..+  +..+.++++|++|++++|.+++..+..+. .+  ++|+.|+
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~~~L~~L~  180 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQGKTLSFFS  180 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHHCSSCCCE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccCCccceEE
Confidence            99999988542 2221234566899999999999665  36789999999999999999977776553 45  8999999


Q ss_pred             ccCCcCccCCCCC-CCC------CCccEEEccCCCCCCCCChhHhhcC--CCCcEEEcccC---------CCCccCCccc
Q 045580          225 LLNNSLSGNFQLP-SSK------HDLLRIDISHNKFSGQLPGNMGKIL--PELLSLNLSEN---------GFEVRIPSSM  286 (764)
Q Consensus       225 L~~n~l~~~~~~~-~~~------~~L~~L~ls~n~l~~~~~~~~~~~l--~~L~~L~L~~n---------~~~~~~~~~l  286 (764)
                      +++|.+.+..... ..+      ..|+.|++++|.+.+.++..+...+  ++++.|.++.+         .+....+..|
T Consensus       181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f  260 (844)
T 3j0a_A          181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF  260 (844)
T ss_dssp             ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred             CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence            9999998643221 122      2499999999999988888776533  57888888733         3333334455


Q ss_pred             cCC--CCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCC
Q 045580          287 SEM--KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATS  362 (764)
Q Consensus       287 ~~l--~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~  362 (764)
                      ..+  ++|+.|++++|.+.+..| ..+..+++|+.|++++|.+.+..  .+..+++|++|++++|.+++..+..+..+++
T Consensus       261 ~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  339 (844)
T 3j0a_A          261 AGLARSSVRHLDLSHGFVFSLNS-RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK  339 (844)
T ss_dssp             TTTTTSCCCEEECTTCCCCEECS-CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred             hccccCCccEEECCCCcccccCh-hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence            554  689999999999985444 44578999999999999998765  6888999999999999999888999999999


Q ss_pred             CCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCC
Q 045580          363 LLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDN  442 (764)
Q Consensus       363 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  442 (764)
                      |++|++++|.+.+..+..|..+++|++|++++|.+++..    .+++|+.|++++|+++ .+|..   ..+++.|++++|
T Consensus       340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N  411 (844)
T 3j0a_A          340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSEN  411 (844)
T ss_dssp             CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSC
T ss_pred             CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc----CCCCcchhccCCCCcc-ccccc---ccccceeecccC
Confidence            999999999999888888999999999999999988533    2788999999999998 44533   568999999999


Q ss_pred             cCCCcc-hhhhhcCCCccEEEccCCcCCccCCc-cccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccc
Q 045580          443 QFSGSI-PIWINEFSYLGILLLRGNQLKGNIPN-QLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWET  520 (764)
Q Consensus       443 ~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~  520 (764)
                      ++++.. +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+.....-                 
T Consensus       412 ~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~-----------------  474 (844)
T 3j0a_A          412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD-----------------  474 (844)
T ss_dssp             CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS-----------------
T ss_pred             ccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh-----------------
Confidence            998642 34567899999999999999865443 45668999999999999874332211000                 


Q ss_pred             cccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceec
Q 045580          521 TQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALN  600 (764)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  600 (764)
                                                                .+  ..+++|+.|+|++|++++.+|..+.++++|+.|+
T Consensus       475 ------------------------------------------~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  510 (844)
T 3j0a_A          475 ------------------------------------------VF--EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS  510 (844)
T ss_dssp             ------------------------------------------CS--SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEE
T ss_pred             ------------------------------------------hh--cCcccccEEECCCCcccccChhHccchhhhheeE
Confidence                                                      00  1245899999999999999999999999999999


Q ss_pred             ccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCCCCCC
Q 045580          601 LSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCG  680 (764)
Q Consensus       601 Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~  680 (764)
                      |++|++++..|..+.  ++|+.|||++|++++.+|..+.   +|+.+++++|++.|.|+..+..    .....++..+||
T Consensus       511 Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~f~----~~~~~~~~~~~~  581 (844)
T 3j0a_A          511 LNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFI----NWLNHTNVTIAG  581 (844)
T ss_dssp             EESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCCSHH----HHHHHTTTTTCC
T ss_pred             CCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccHHHH----HHHHhcCccccc
Confidence            999999987777766  8999999999999999997764   7889999999999999854321    111234556677


Q ss_pred             CCCCCCCCCC
Q 045580          681 PRINKSCTTV  690 (764)
Q Consensus       681 ~~~~~~c~~~  690 (764)
                      .+....|..+
T Consensus       582 ~~~~~~C~~p  591 (844)
T 3j0a_A          582 PPADIYCVYP  591 (844)
T ss_dssp             CGGGCCCSSC
T ss_pred             ccccCccCCc
Confidence            6666677543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.6e-54  Score=496.49  Aligned_cols=520  Identities=21%  Similarity=0.177  Sum_probs=436.2

Q ss_pred             ccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhcc
Q 045580           64 VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKN  143 (764)
Q Consensus        64 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~  143 (764)
                      +|..+.  +++++|||++|.+++..|.+|+++++|++|+|++|++++..|.+|+++++|++|++++|++++..| ..+++
T Consensus        27 iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~  103 (606)
T 3t6q_A           27 IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSG  103 (606)
T ss_dssp             CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSS
T ss_pred             CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcc
Confidence            444443  479999999999999989999999999999999999999889999999999999999999985444 67999


Q ss_pred             CCCCcEEEccCCCCCCc-cccCCCCCCCCccEEEcCCCCCCCcc-HhhhCCCCccEEEccCCCCCCccchHHhhcCCCCC
Q 045580          144 HSKLQVFKLSNSLVKIE-TEEFPGLPEYQLKALNLRNCSLHALP-SFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLD  221 (764)
Q Consensus       144 l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  221 (764)
                      +++|++|++++|.+... ...+  ..+++|++|++++|.+..++ ..+..+++|++|++++|++++..|. .+..+++|+
T Consensus       104 l~~L~~L~L~~n~i~~l~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~  180 (606)
T 3t6q_A          104 PKALKHLFFIQTGISSIDFIPL--HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE-DMSSLQQAT  180 (606)
T ss_dssp             CTTCCEEECTTSCCSCGGGSCC--TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH-HHHTTTTCC
T ss_pred             cccccEeeccccCcccCCcchh--ccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh-hhhhhcccc
Confidence            99999999999988542 3333  44567999999999997762 3344599999999999999954454 456899999


Q ss_pred             --EEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCC-----ccCCccccCCC--CC
Q 045580          222 --TLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFE-----VRIPSSMSEMK--RL  292 (764)
Q Consensus       222 --~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-----~~~~~~l~~l~--~L  292 (764)
                        +|++++|.+++.........+|+.|++++|.   .++..+. .+.++....+....+.     ...+..+..+.  +|
T Consensus       181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~-~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L  256 (606)
T 3t6q_A          181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFK-GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV  256 (606)
T ss_dssp             SEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHH-HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred             eeEEecCCCccCccChhHhhhccccccccCCch---hHHHHhh-hccccchhheechhhccccccccChhHhchhhcCce
Confidence              9999999999876555567789999999986   3343333 3555544443332221     11223333333  78


Q ss_pred             CEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee-ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCC
Q 045580          293 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNN  371 (764)
Q Consensus       293 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  371 (764)
                      +.|++++|.+. .++...+..+++|++|++++|.++... .+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       257 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          257 ESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN  335 (606)
T ss_dssp             EEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred             eEEEeecCccC-ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence            99999999998 566665688999999999999988665 6788899999999999999888889999999999999999


Q ss_pred             ccCCCccc-cccCCCCCCEEECcCCCCCCCC--CCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCc
Q 045580          372 MLYGQIPH-WFGNLSGLQFLDISENQLSGSV--PSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGS  447 (764)
Q Consensus       372 ~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~  447 (764)
                      .+.+.+|. .+..+++|++|++++|.+++..  +..+ .+++|+.|++++|.+.+..|..+..+++|+.|++++|++++.
T Consensus       336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  415 (606)
T 3t6q_A          336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK  415 (606)
T ss_dssp             SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred             CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence            99876655 5899999999999999998775  5555 899999999999999988899999999999999999999877


Q ss_pred             chh-hhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCc-C--hhhhcchhhcccccCCcccccccccc
Q 045580          448 IPI-WINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPI-P--VCFANVTLWTLGQAAGSFVLWETTQR  523 (764)
Q Consensus       448 ~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p--~~~~~l~~~~~~~~~~~~~~~~~~~~  523 (764)
                      .|. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++.. |  ..+.                      
T Consensus       416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~----------------------  473 (606)
T 3t6q_A          416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ----------------------  473 (606)
T ss_dssp             TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG----------------------
T ss_pred             ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc----------------------
Confidence            654 4889999999999999999888999999999999999999987522 1  1121                      


Q ss_pred             chhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccc
Q 045580          524 ISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSH  603 (764)
Q Consensus       524 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~  603 (764)
                                                                  .+++|+.|++++|++++..|..++.+++|+.|+|++
T Consensus       474 --------------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  509 (606)
T 3t6q_A          474 --------------------------------------------TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH  509 (606)
T ss_dssp             --------------------------------------------GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             --------------------------------------------cCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence                                                        245899999999999999999999999999999999


Q ss_pred             cccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580          604 NFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA  661 (764)
Q Consensus       604 N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~  661 (764)
                      |++++.+|..++++++| .||+++|++++.+|..+..+++|+.+++++|++.|.|+..
T Consensus       510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  566 (606)
T 3t6q_A          510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI  566 (606)
T ss_dssp             SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred             CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence            99999999999999999 9999999999999999999999999999999999998854

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.8e-53  Score=489.45  Aligned_cols=517  Identities=22%  Similarity=0.168  Sum_probs=435.0

Q ss_pred             ccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhcc
Q 045580           64 VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKN  143 (764)
Q Consensus        64 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~  143 (764)
                      +|..+.  +++++|+|++|.+++..+.+|.++++|++|+|++|++++..|.+|+++++|++|++++|++++..| ..+++
T Consensus        26 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~  102 (606)
T 3vq2_A           26 VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-GSFSG  102 (606)
T ss_dssp             CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-TSSTT
T ss_pred             CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-hhcCC
Confidence            344443  799999999999999888899999999999999999999889999999999999999999985545 67999


Q ss_pred             CCCCcEEEccCCCCCC-ccccCCCCCCCCccEEEcCCCCCC--CccHhhhCCCCccEEEccCCCCCCccchHHhhcCCC-
Q 045580          144 HSKLQVFKLSNSLVKI-ETEEFPGLPEYQLKALNLRNCSLH--ALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTK-  219 (764)
Q Consensus       144 l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~--~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~-  219 (764)
                      +++|++|++++|.+.. +...  ...+.+|++|++++|.+.  .+|..+.++++|++|++++|++++..+..+ +.+++ 
T Consensus       103 l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L  179 (606)
T 3vq2_A          103 LTSLENLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLREN  179 (606)
T ss_dssp             CTTCCEEECTTSCCCCSSSSC--CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHC
T ss_pred             cccCCEEEccCCccccccccc--cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh-hhhhcc
Confidence            9999999999998843 3233  345567999999999996  579999999999999999999996555433 34444 


Q ss_pred             ---CCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCcc---------CCcccc
Q 045580          220 ---LDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVR---------IPSSMS  287 (764)
Q Consensus       220 ---L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~---------~~~~l~  287 (764)
                         +++|++++|.+++.........+|++|++++|.+.+.........++.|+.+++..+.+...         .+..+.
T Consensus       180 ~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~  259 (606)
T 3vq2_A          180 PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC  259 (606)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG
T ss_pred             ccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhh
Confidence               45899999999876555555569999999999987544444445699999988866544321         112222


Q ss_pred             CCCCCCEEEC-CCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEE
Q 045580          288 EMKRLESLDL-SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL  366 (764)
Q Consensus       288 ~l~~L~~L~L-s~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  366 (764)
                      .+ +++.+++ ..+.+.+.+|.  +..+++|+.|++++|.+.....+..+++|++|++++|.+ +.+| .+ .+++|++|
T Consensus       260 ~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L  333 (606)
T 3vq2_A          260 DV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSL  333 (606)
T ss_dssp             GS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEE
T ss_pred             hc-cHhheeccccccccccccc--cccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCcccee
Confidence            22 4667777 67778877776  578999999999999998877888899999999999999 5677 45 89999999


Q ss_pred             eCcCCccCCCccccccCCCCCCEEECcCCCCCCCC--CCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCc
Q 045580          367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSV--PSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQ  443 (764)
Q Consensus       367 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  443 (764)
                      ++++|...+..  .+..+++|++|++++|.+++..  +..+ .+++|+.|++++|.+.+ +|..+..+++|+.|++++|+
T Consensus       334 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~  410 (606)
T 3vq2_A          334 TLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST  410 (606)
T ss_dssp             EEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSE
T ss_pred             eccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCc
Confidence            99999655433  6778999999999999998763  5555 88999999999999885 56788999999999999999


Q ss_pred             CCCcch-hhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCC-cChhhhcchhhcccccCCcccccccc
Q 045580          444 FSGSIP-IWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGP-IPVCFANVTLWTLGQAAGSFVLWETT  521 (764)
Q Consensus       444 l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~  521 (764)
                      +++..| ..+..+++|++|++++|++++..|..+..+++|++|++++|++++. +|..+..                   
T Consensus       411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-------------------  471 (606)
T 3vq2_A          411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-------------------  471 (606)
T ss_dssp             EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-------------------
T ss_pred             cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc-------------------
Confidence            998877 6889999999999999999998999999999999999999999873 5555443                   


Q ss_pred             ccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecc
Q 045580          522 QRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNL  601 (764)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~L  601 (764)
                                                                     +++|+.|++++|++++.+|..++.+++|+.|+|
T Consensus       472 -----------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  504 (606)
T 3vq2_A          472 -----------------------------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM  504 (606)
T ss_dssp             -----------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             -----------------------------------------------CCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence                                                           448999999999999999999999999999999


Q ss_pred             cccccccccCccccCCCCCCEEECcCCcCcccCcccccCCC-CCCeEeccCCccccCCCCCC
Q 045580          602 SHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELN-FLSNFNVSYNHLSGPTPNAG  662 (764)
Q Consensus       602 s~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~~p~~~  662 (764)
                      ++|++++.+|..++++++|+.||+++|+++ .+|..+..++ +|+++++++|++.|.++..+
T Consensus       505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~  565 (606)
T 3vq2_A          505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQK  565 (606)
T ss_dssp             CSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred             CCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence            999999999999999999999999999999 6788899987 59999999999999998653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.4e-52  Score=476.08  Aligned_cols=527  Identities=21%  Similarity=0.218  Sum_probs=405.3

Q ss_pred             cEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccC
Q 045580           75 VELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSN  154 (764)
Q Consensus        75 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~  154 (764)
                      ++++.++..++ .+|..+.  +++++|+|++|.+++..|.+|+++++|++|++++|++.+ +++..|.++++|++|++++
T Consensus        15 ~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           15 KTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             TEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTT
T ss_pred             ceEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCC
Confidence            36788888887 5666665  479999999999999889999999999999999999985 4446788999999999988


Q ss_pred             CCCCC-ccccCCCCCCCCccEEEcCCCCCCCc-cHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCcc
Q 045580          155 SLVKI-ETEEFPGLPEYQLKALNLRNCSLHAL-PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSG  232 (764)
Q Consensus       155 ~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~l-p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  232 (764)
                      |.+.. ....+.  .+++|++|++++|.++.+ |..+..+++|++|++++|++++..+..++ .+++|++|++++|.+++
T Consensus        91 n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A           91 NPLIFMAETALS--GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             CCCSEECTTTTS--SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCE
T ss_pred             CcccccChhhhc--ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccccc-CCcccCEEEcccCcccc
Confidence            87643 232232  344577888887777666 45667777777777777777742222222 46777777777777664


Q ss_pred             CCC-CCCCCCCcc--EEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCccc----cc
Q 045580          233 NFQ-LPSSKHDLL--RIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFS----GE  305 (764)
Q Consensus       233 ~~~-~~~~~~~L~--~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~----~~  305 (764)
                      ... ....+++|+  .|++++|.+.+..|..+ . ..+|++|++++|.   ..+..+..+.+++...+....+.    ..
T Consensus       168 ~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~-~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~  242 (606)
T 3t6q_A          168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF-D-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDED  242 (606)
T ss_dssp             ECHHHHHTTTTCCSEEEECTTCCCCEECTTTT-T-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred             cChhhhhhhcccceeEEecCCCccCccChhHh-h-hccccccccCCch---hHHHHhhhccccchhheechhhccccccc
Confidence            311 122455565  66777777664433333 2 3566777776664   22333334433332222211111    12


Q ss_pred             CchhhhhCCC--CCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccc
Q 045580          306 LPRQFLSGCF--SLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWF  381 (764)
Q Consensus       306 ~p~~~~~~l~--~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  381 (764)
                      ++...+.++.  +|+.|++++|.+++..  .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+
T Consensus       243 i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~  321 (606)
T 3t6q_A          243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA  321 (606)
T ss_dssp             CCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred             cChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhh
Confidence            3333333333  7889999999988766  5888899999999999988 677788899999999999999987778889


Q ss_pred             cCCCCCCEEECcCCCCCCCCCCc-c-cCCCccEEeccCCcccccc--chhhcCCCCCCEEEccCCcCCCcchhhhhcCCC
Q 045580          382 GNLSGLQFLDISENQLSGSVPSS-F-NLSSLRRLYMHMNAFNGSI--PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSY  457 (764)
Q Consensus       382 ~~l~~L~~L~L~~n~l~~~~~~~-~-~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~  457 (764)
                      ..+++|++|++++|.+.+.++.. + .+++|+.|++++|.+.+..  +..+..+++|++|++++|++++..|..+..+++
T Consensus       322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  401 (606)
T 3t6q_A          322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ  401 (606)
T ss_dssp             GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred             hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence            99999999999999988766654 4 7899999999999988765  778889999999999999998888888999999


Q ss_pred             ccEEEccCCcCCccCCcc-ccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhh
Q 045580          458 LGILLLRGNQLKGNIPNQ-LCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTL  536 (764)
Q Consensus       458 L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  536 (764)
                      |++|++++|++++..+.. +..+++|++|++++|.+++..|..+..                                  
T Consensus       402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------  447 (606)
T 3t6q_A          402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG----------------------------------  447 (606)
T ss_dssp             CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT----------------------------------
T ss_pred             CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC----------------------------------
Confidence            999999999998776544 888999999999999998777765543                                  


Q ss_pred             hccccccccccCCccceEEeeccccccccccccccccEEEcccCccccc---CCccccCccccceecccccccccccCcc
Q 045580          537 ELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGD---IPSEIGSLSEIRALNLSHNFLSGSIPQS  613 (764)
Q Consensus       537 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~---ip~~l~~l~~L~~L~Ls~N~l~~~~p~~  613 (764)
                                                      +++|+.|++++|++++.   .+..++.+++|+.|++++|++++..|..
T Consensus       448 --------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  495 (606)
T 3t6q_A          448 --------------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA  495 (606)
T ss_dssp             --------------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred             --------------------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence                                            34799999999999873   3367999999999999999999999999


Q ss_pred             ccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-CCCCCCCccccCCCCCCCCC
Q 045580          614 LSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA-GQFANFDEQNYGGNSGLCGP  681 (764)
Q Consensus       614 l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~~~~~~gn~~lc~~  681 (764)
                      ++++++|+.|||++|++++.+|..+..++.| +|++++|++++.+|.. ..+..++...+.|||..|..
T Consensus       496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred             hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence            9999999999999999999999999999999 9999999999888764 45667778889999998853

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=6.4e-51  Score=483.75  Aligned_cols=523  Identities=21%  Similarity=0.225  Sum_probs=420.1

Q ss_pred             cEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccC
Q 045580           75 VELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSN  154 (764)
Q Consensus        75 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~  154 (764)
                      +..|.++++++. +|.   ..++|++|||++|.+++..|..|.++++|++|+|++|.+.+.++...|.++++|++|++++
T Consensus         7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            357788888885 454   4589999999999999988999999999999999999888788778899999999999999


Q ss_pred             CCCCC-ccccCCCCCCCCccEEEcCCCCCCC-ccHh--hhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcC
Q 045580          155 SLVKI-ETEEFPGLPEYQLKALNLRNCSLHA-LPSF--LLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSL  230 (764)
Q Consensus       155 ~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~-lp~~--l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  230 (764)
                      |.+.. .+..+.  .+.+|++|+|++|.+.. +|..  +.++++|++|++++|.+++..+...++++++|++|++++|.+
T Consensus        83 N~l~~~~p~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A           83 SKIYFLHPDAFQ--GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             CCCCEECTTSSC--SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             CcCcccCHhHcc--CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            98743 344444  34569999999999954 5554  888999999999999998766655567899999999999998


Q ss_pred             ccCCCCC-CCC--CCccEEEccCCCCCCCCChhHhhcCC------CCcEEEcccCCCCccCCccccCC---CCCCEEECC
Q 045580          231 SGNFQLP-SSK--HDLLRIDISHNKFSGQLPGNMGKILP------ELLSLNLSENGFEVRIPSSMSEM---KRLESLDLS  298 (764)
Q Consensus       231 ~~~~~~~-~~~--~~L~~L~ls~n~l~~~~~~~~~~~l~------~L~~L~L~~n~~~~~~~~~l~~l---~~L~~L~Ls  298 (764)
                      ++..... ..+  ++|+.|++++|.+.+..|..+.. ++      .|++|++++|.+++..+..+...   .+++.+.++
T Consensus       161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~  239 (844)
T 3j0a_A          161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA  239 (844)
T ss_dssp             CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred             CeeCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence            7642111 122  78899999999988777765433 33      38999999998887777766543   567888877


Q ss_pred             CCc---------ccccCchhhhhCC--CCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCE
Q 045580          299 SNN---------FSGELPRQFLSGC--FSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLE  365 (764)
Q Consensus       299 ~n~---------l~~~~p~~~~~~l--~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  365 (764)
                      .+.         +.+ .....+.++  ++|+.|++++|.+.+..  .+..+++|+.|++++|.+++..+..|..+++|++
T Consensus       240 ~~~~~~~~~~~~l~~-~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  318 (844)
T 3j0a_A          240 HHIMGAGFGFHNIKD-PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV  318 (844)
T ss_dssp             SSCCBCSSSCSSSTT-GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred             cccccccccccccCC-CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence            332         221 222222333  68999999999888764  6788899999999999999888888999999999


Q ss_pred             EeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcC
Q 045580          366 LDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQF  444 (764)
Q Consensus       366 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  444 (764)
                      |++++|.+++..|..|..+++|+.|++++|.+.+..+..+ .+++|+.|++++|.+++.     ..+++|+.|++++|++
T Consensus       319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l  393 (844)
T 3j0a_A          319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKL  393 (844)
T ss_dssp             EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCC
T ss_pred             EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCc
Confidence            9999999988888889999999999999999988777777 789999999999988743     2378899999999998


Q ss_pred             CCcchhhhhcCCCccEEEccCCcCCccC-CccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccccccccc
Q 045580          445 SGSIPIWINEFSYLGILLLRGNQLKGNI-PNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQR  523 (764)
Q Consensus       445 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  523 (764)
                      + .+|..   ..+++.|++++|++++.. +..+..+++|+.|++++|++++..+....                      
T Consensus       394 ~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------------------  447 (844)
T 3j0a_A          394 V-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP----------------------  447 (844)
T ss_dssp             C-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS----------------------
T ss_pred             c-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc----------------------
Confidence            8 45543   467889999999988642 23456889999999999998754332110                      


Q ss_pred             chhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCccc-----ccCCccccCccccce
Q 045580          524 ISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELT-----GDIPSEIGSLSEIRA  598 (764)
Q Consensus       524 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-----~~ip~~l~~l~~L~~  598 (764)
                                                                 ..+++|+.|+|++|.++     +..|..+.++++|+.
T Consensus       448 -------------------------------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~  484 (844)
T 3j0a_A          448 -------------------------------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV  484 (844)
T ss_dssp             -------------------------------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEEC
T ss_pred             -------------------------------------------ccCCccccccCCCCccccccccccchhhhcCcccccE
Confidence                                                       11457999999999997     455677899999999


Q ss_pred             ecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCCCC
Q 045580          599 LNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGL  678 (764)
Q Consensus       599 L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~l  678 (764)
                      |+|++|++++.+|..+.++++|+.|+|++|++++..|..+.  ++|+.||+++|++++.+|..  +..+....+.|||+.
T Consensus       485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~  560 (844)
T 3j0a_A          485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFI  560 (844)
T ss_dssp             CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCC
T ss_pred             EECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcc
Confidence            99999999999999999999999999999999987777766  89999999999999999865  567778889999999


Q ss_pred             CCCCC
Q 045580          679 CGPRI  683 (764)
Q Consensus       679 c~~~~  683 (764)
                      |..+.
T Consensus       561 C~c~~  565 (844)
T 3j0a_A          561 CECEL  565 (844)
T ss_dssp             CSSSC
T ss_pred             ccccc
Confidence            97654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.8e-50  Score=464.49  Aligned_cols=527  Identities=20%  Similarity=0.189  Sum_probs=431.1

Q ss_pred             CcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEcc
Q 045580           74 LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS  153 (764)
Q Consensus        74 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~  153 (764)
                      -++++.+++.++ .+|..+.  ++|++|+|++|++++..+..|+++++|++|++++|++++ ++...|.++++|++|+++
T Consensus        13 ~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           13 NITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECT
T ss_pred             CCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECC
Confidence            357899999998 4565554  899999999999999888899999999999999999984 444678999999999999


Q ss_pred             CCCCCCc-cccCCCCCCCCccEEEcCCCCCCCcc-HhhhCCCCccEEEccCCCCCC-ccchHHhhcCCCCCEEEccCCcC
Q 045580          154 NSLVKIE-TEEFPGLPEYQLKALNLRNCSLHALP-SFLLHQLDLRFIDLSHNKLQG-TFPSWLLQNNTKLDTLYLLNNSL  230 (764)
Q Consensus       154 ~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l  230 (764)
                      +|.+... +..+.  .+++|++|++++|.+..++ ..+..+++|++|++++|++++ .+|..+ .++++|++|++++|.+
T Consensus        89 ~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A           89 GNPIQSFSPGSFS--GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             TCCCCCCCTTSST--TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCC
T ss_pred             CCcccccChhhcC--CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcc
Confidence            9987433 44444  3457999999999997776 678999999999999999985 567765 4899999999999999


Q ss_pred             ccCCCC-CCCCCC----ccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCC-ccCCccccCCCCCCEEECCCCcccc
Q 045580          231 SGNFQL-PSSKHD----LLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFE-VRIPSSMSEMKRLESLDLSSNNFSG  304 (764)
Q Consensus       231 ~~~~~~-~~~~~~----L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~  304 (764)
                      ++.... ...+.+    ++.|++++|.++ .++...+. ..+|++|++++|.+. +..|..+.++++|+.+++..+.+.+
T Consensus       166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  243 (606)
T 3vq2_A          166 QTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD  243 (606)
T ss_dssp             CEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             eecChhhhhhhhccccccceeeccCCCcc-eeCccccc-CceeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence            875321 112222    458999999998 56666555 348999999999886 4567788899999988886554432


Q ss_pred             -----cCchhhhhCCC--CCCEEEe-eccccccee-ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCC
Q 045580          305 -----ELPRQFLSGCF--SLSFLSL-SDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG  375 (764)
Q Consensus       305 -----~~p~~~~~~l~--~L~~L~l-~~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  375 (764)
                           .++...+.++.  .++.+++ ..+.+.+.. .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+ +
T Consensus       244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~  320 (606)
T 3vq2_A          244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-K  320 (606)
T ss_dssp             SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-S
T ss_pred             CCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-c
Confidence                 12222223332  3455666 555665544 57788999999999999974 44 788999999999999999 5


Q ss_pred             CccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccc--cchhhcCCCCCCEEEccCCcCCCcchhhhh
Q 045580          376 QIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGS--IPGALRRSSSLTVLDLRDNQFSGSIPIWIN  453 (764)
Q Consensus       376 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~  453 (764)
                      .+|. + .+++|++|++++|...+.. ....+++|+.|++++|.+++.  .+..+..+++|++|++++|.+++ +|..+.
T Consensus       321 ~lp~-~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~  396 (606)
T 3vq2_A          321 QFPT-L-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM  396 (606)
T ss_dssp             SCCC-C-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCT
T ss_pred             cccc-C-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhcc
Confidence            7774 5 8999999999999765544 223789999999999999876  37889999999999999999884 668889


Q ss_pred             cCCCccEEEccCCcCCccCC-ccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhh
Q 045580          454 EFSYLGILLLRGNQLKGNIP-NQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYY  532 (764)
Q Consensus       454 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (764)
                      .+++|++|++++|++.+..| ..+..+++|++|++++|.+++..|..+..                              
T Consensus       397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------  446 (606)
T 3vq2_A          397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG------------------------------  446 (606)
T ss_dssp             TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT------------------------------
T ss_pred             CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC------------------------------
Confidence            99999999999999998777 68899999999999999998877766654                              


Q ss_pred             hhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccc-cCCccccCccccceecccccccccccC
Q 045580          533 NSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTG-DIPSEIGSLSEIRALNLSHNFLSGSIP  611 (764)
Q Consensus       533 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~~p  611 (764)
                                                          +++|+.|++++|++++ .+|..++.+++|+.|+|++|++++..|
T Consensus       447 ------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  490 (606)
T 3vq2_A          447 ------------------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW  490 (606)
T ss_dssp             ------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred             ------------------------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence                                                3479999999999998 489999999999999999999999999


Q ss_pred             ccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-CCCC-CCCccccCCCCCCCCCCC
Q 045580          612 QSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA-GQFA-NFDEQNYGGNSGLCGPRI  683 (764)
Q Consensus       612 ~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~~-~~~~~~~~gn~~lc~~~~  683 (764)
                      ..++++++|+.|++++|++++.+|..+..+++|++||+++|+++. +|.. ..+. +++...+.|||..|..+.
T Consensus       491 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            999999999999999999999999999999999999999999994 6654 4443 467788999999997543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.2e-48  Score=441.74  Aligned_cols=498  Identities=21%  Similarity=0.188  Sum_probs=388.2

Q ss_pred             CCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEE
Q 045580           72 KKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFK  151 (764)
Q Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~  151 (764)
                      +++++|||++|.+++..+.+|.++++|++|+|++|++++..+.+|+++++|++|++++|+++ .++...|+++++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccccc
Confidence            57999999999999988889999999999999999999888889999999999999999998 45557799999999999


Q ss_pred             ccCCCCCCccccCCCCCCCCccEEEcCCCCCCC--ccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCC----CEEEc
Q 045580          152 LSNSLVKIETEEFPGLPEYQLKALNLRNCSLHA--LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKL----DTLYL  225 (764)
Q Consensus       152 l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L----~~L~L  225 (764)
                      +++|.+..... .....+++|++|++++|.+..  +|..+.++++|++|++++|++++..+.. ++.+++|    +.|++
T Consensus       107 L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~~~~~L~l  184 (570)
T 2z63_A          107 AVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDL  184 (570)
T ss_dssp             CTTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG-GHHHHTCTTCCCEEEC
T ss_pred             ccccccccCCC-ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH-ccchhccchhhhhccc
Confidence            99998743322 123455679999999999965  7899999999999999999998544443 4467777    89999


Q ss_pred             cCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCccccc
Q 045580          226 LNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGE  305 (764)
Q Consensus       226 ~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  305 (764)
                      ++|.+++.........+|+.|++++|.............++.++.+.+....+..        ...++           .
T Consensus       185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~~l~-----------~  245 (570)
T 2z63_A          185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EGNLE-----------K  245 (570)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CSSCE-----------E
T ss_pred             CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccC--------chhhh-----------h
Confidence            9999887544333444788888888754432222223346777666654332221        01111           1


Q ss_pred             CchhhhhCCC--CCCEEEeecc-ccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCcccc
Q 045580          306 LPRQFLSGCF--SLSFLSLSDN-HLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHW  380 (764)
Q Consensus       306 ~p~~~~~~l~--~L~~L~l~~n-~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  380 (764)
                      ++...+.++.  .++.++++++ .+.+..  .+..+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|. 
T Consensus       246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-  321 (570)
T 2z63_A          246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-  321 (570)
T ss_dssp             CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-
T ss_pred             cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-
Confidence            1111111222  2344555544 333222  4555677777777777776 466667777 8888888888887 4554 


Q ss_pred             ccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCcccccc--chhhcCCCCCCEEEccCCcCCCcchhhhhcCCCc
Q 045580          381 FGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSI--PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYL  458 (764)
Q Consensus       381 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L  458 (764)
                       ..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+++..  +..+..+++|+.|++++|++++..+. +..+++|
T Consensus       322 -~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L  398 (570)
T 2z63_A          322 -LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQL  398 (570)
T ss_dssp             -CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTC
T ss_pred             -ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCC
Confidence             4678888888888887766554 56788999999999887654  67888999999999999999865444 8899999


Q ss_pred             cEEEccCCcCCccCC-ccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhh
Q 045580          459 GILLLRGNQLKGNIP-NQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLE  537 (764)
Q Consensus       459 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  537 (764)
                      ++|++++|++.+..+ ..+..+++|++|++++|.+++..|..+..                                   
T Consensus       399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------------------  443 (570)
T 2z63_A          399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-----------------------------------  443 (570)
T ss_dssp             CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT-----------------------------------
T ss_pred             CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc-----------------------------------
Confidence            999999999987665 56888999999999999998777765544                                   


Q ss_pred             ccccccccccCCccceEEeeccccccccccccccccEEEcccCccc-ccCCccccCccccceecccccccccccCccccC
Q 045580          538 LSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELT-GDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSN  616 (764)
Q Consensus       538 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  616 (764)
                                                     +++|+.|++++|+++ +.+|..++.+++|+.|++++|++++..|..+++
T Consensus       444 -------------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  492 (570)
T 2z63_A          444 -------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS  492 (570)
T ss_dssp             -------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             -------------------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc
Confidence                                           347999999999998 679999999999999999999999988999999


Q ss_pred             CCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCC
Q 045580          617 LKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQF  664 (764)
Q Consensus       617 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~  664 (764)
                      +++|+.|++++|++++.+|..+..+++|+.|++++|+++|.||..+.+
T Consensus       493 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             ccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence            999999999999999988889999999999999999999999986543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.5e-47  Score=431.87  Aligned_cols=478  Identities=19%  Similarity=0.196  Sum_probs=351.5

Q ss_pred             ccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhcc
Q 045580           64 VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKN  143 (764)
Q Consensus        64 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~  143 (764)
                      +|..+.  ++|++|+|++|.+++..|.+|.++++|++|+|++|++++..|.+|+++++|++|++++|++++ ++...+++
T Consensus        20 ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~   96 (549)
T 2z81_A           20 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGP   96 (549)
T ss_dssp             CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTT
T ss_pred             ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhcc
Confidence            455543  799999999999998888999999999999999999999888999999999999999999984 45466888


Q ss_pred             CCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEE
Q 045580          144 HSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTL  223 (764)
Q Consensus       144 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  223 (764)
                      +++|++|++++|.+...                       .+|..+..+++|++|++++|++.+.+|...+.++++|++|
T Consensus        97 l~~L~~L~Ls~n~l~~~-----------------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  153 (549)
T 2z81_A           97 LSSLKYLNLMGNPYQTL-----------------------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL  153 (549)
T ss_dssp             CTTCCEEECTTCCCSSS-----------------------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             CCCCcEEECCCCccccc-----------------------chhhhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence            88888888877765321                       1123344445555555555553334443333455555555


Q ss_pred             EccCCcCccC-CCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccC--C-ccccCCCCCCEEECCC
Q 045580          224 YLLNNSLSGN-FQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRI--P-SSMSEMKRLESLDLSS  299 (764)
Q Consensus       224 ~L~~n~l~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~-~~l~~l~~L~~L~Ls~  299 (764)
                      ++++|.+++. +.....+++|++|+++.|.+. .+|..+...+++|++|++++|.+++..  | .....+++|+.|++++
T Consensus       154 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~  232 (549)
T 2z81_A          154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG  232 (549)
T ss_dssp             EEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEES
T ss_pred             eccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccc
Confidence            5555555442 122235566777777777765 667766666889999999999887642  1 2234577899999999


Q ss_pred             CcccccCchhh---hhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCC
Q 045580          300 NNFSGELPRQF---LSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ  376 (764)
Q Consensus       300 n~l~~~~p~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  376 (764)
                      |.+.+..+..+   +..+++|+.+++++|.+.+...+..                .....+..+.+|+.|++.++.+...
T Consensus       233 n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~----------------~~~~~~~~l~~L~~L~l~~~~i~~~  296 (549)
T 2z81_A          233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP----------------SESDVVSELGKVETVTIRRLHIPQF  296 (549)
T ss_dssp             CEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC----------------CTTTCCCCCTTCCEEEEESCBCSCG
T ss_pred             cccchhHHHHHHHHhhhhccccccccccccccccccccc----------------cchhhhhhhcccccccccccccchh
Confidence            88876554433   2456777888887777654321110                0112234455666666666654421


Q ss_pred             -----ccccccCCCCCCEEECcCCCCCCCCCCcc--cCCCccEEeccCCccccccch---hhcCCCCCCEEEccCCcCCC
Q 045580          377 -----IPHWFGNLSGLQFLDISENQLSGSVPSSF--NLSSLRRLYMHMNAFNGSIPG---ALRRSSSLTVLDLRDNQFSG  446 (764)
Q Consensus       377 -----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~L~~n~l~~  446 (764)
                           ++..+...++|+.|++++|.+. .+|..+  .+++|+.|++++|.+.+.+|.   .++.+++|+.|++++|++++
T Consensus       297 ~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  375 (549)
T 2z81_A          297 YLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS  375 (549)
T ss_dssp             GGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC
T ss_pred             hhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc
Confidence                 1222334567888888888876 445443  588888999998888876643   36788999999999999986


Q ss_pred             cch--hhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccc
Q 045580          447 SIP--IWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRI  524 (764)
Q Consensus       447 ~~p--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  524 (764)
                      ..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..                         
T Consensus       376 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~-------------------------  428 (549)
T 2z81_A          376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTC-------------------------  428 (549)
T ss_dssp             HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTT-------------------------
T ss_pred             cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccch-------------------------
Confidence            533  56889999999999999999 688888999999999999999863 2211                         


Q ss_pred             hhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceeccccc
Q 045580          525 STEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHN  604 (764)
Q Consensus       525 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N  604 (764)
                                                                 .++.|+.||+++|++++.+    +.+++|+.|+|++|
T Consensus       429 -------------------------------------------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N  461 (549)
T 2z81_A          429 -------------------------------------------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRN  461 (549)
T ss_dssp             -------------------------------------------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS
T ss_pred             -------------------------------------------hcCCceEEECCCCChhhhc----ccCChhcEEECCCC
Confidence                                                       1237899999999999743    57899999999999


Q ss_pred             ccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580          605 FLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA  661 (764)
Q Consensus       605 ~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~  661 (764)
                      +++ .+|. .+.+++|+.|||++|++++.+|..+..+++|+.|++++|++.|.||..
T Consensus       462 ~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  516 (549)
T 2z81_A          462 KLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  516 (549)
T ss_dssp             CCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred             ccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence            999 6776 578999999999999999999999999999999999999999999954

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.9e-49  Score=452.10  Aligned_cols=493  Identities=17%  Similarity=0.237  Sum_probs=333.0

Q ss_pred             CCcccccCCccccCC---CCcceeeeccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCC------CC-
Q 045580           41 GSITDFSVEDSCRKT---SGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQL------TG-  110 (764)
Q Consensus        41 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l------~~-  110 (764)
                      .....|.....||.|   .||.|...        .+++.|+|+++.+.|.+|.+++++++|++|+|++|.+      .+ 
T Consensus        55 ~~~~~W~~~~~~c~w~~~~GV~C~~~--------~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~  126 (636)
T 4eco_A           55 QPGANWNFNKELDMWGAQPGVSLNSN--------GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP  126 (636)
T ss_dssp             ---CCCCCSSCGGGTTCCTTEEECTT--------CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBST
T ss_pred             ccCCCCCCCCCcccccCCCCeEEcCC--------CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccc
Confidence            344679888889999   99998521        6899999999999999999999999999999999976      22 


Q ss_pred             -----cchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcC--CCCCC
Q 045580          111 -----NLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLR--NCSLH  183 (764)
Q Consensus       111 -----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~--~n~l~  183 (764)
                           .+|...  +.+|+ +++++|.+.+.++...-..+.++..+++....+.       ......++.+.+.  .|+++
T Consensus       127 ~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~l~~l~l~~~~n~l~  196 (636)
T 4eco_A          127 KGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK-------KSSRITLKDTQIGQLSNNIT  196 (636)
T ss_dssp             TSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC-------CCCCCCCCTTTTTCCSCEEE
T ss_pred             cccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccc-------cccccchhhhhhccccCCCc
Confidence                 334333  45666 7888887776655321112222222222211110       0011112222222  24443


Q ss_pred             CccHhhhCCCCccEEEccCCCCCCc-cchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHh
Q 045580          184 ALPSFLLHQLDLRFIDLSHNKLQGT-FPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMG  262 (764)
Q Consensus       184 ~lp~~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  262 (764)
                      .+|..++++++|++|+|++|++++. ++...                      .+.          +.....+.+|..++
T Consensus       197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----------------------~~~----------~~~~~~~~ip~~l~  244 (636)
T 4eco_A          197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAW----------------------ENE----------NSEYAQQYKTEDLK  244 (636)
T ss_dssp             EECGGGGGCTTCCEEEEESCCCCGGGBSSSC----------------------SCT----------TSHHHHHHTTSCCC
T ss_pred             cCCHHHhcccCCCEEECcCCccccccccccc----------------------ccc----------ccchhcccCchhhh
Confidence            3565566666666666666655542 11000                      000          00000011444443


Q ss_pred             -hcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCc-ccc-cCchhhhh-----CCCCCCEEEeecccccceee--
Q 045580          263 -KILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNN-FSG-ELPRQFLS-----GCFSLSFLSLSDNHLQGEVV--  332 (764)
Q Consensus       263 -~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~p~~~~~-----~l~~L~~L~l~~n~l~~~~~--  332 (764)
                       ..+++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..     .+++|++|++++|.++....  
T Consensus       245 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~  324 (636)
T 4eco_A          245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET  324 (636)
T ss_dssp             GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred             hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence             126667777777776666666667777777777777776 665 56655421     12666666666666664332  


Q ss_pred             -cCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCC-CCEEECcCCCCCCCCCCcc-c--C
Q 045580          333 -FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSG-LQFLDISENQLSGSVPSSF-N--L  407 (764)
Q Consensus       333 -~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~-~--~  407 (764)
                       +..+++|++|++++|.++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+ .  +
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l  401 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV  401 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred             hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence             5667777777777777776777 7777888888888888887 67777888888 888888888887 566655 2  3


Q ss_pred             CCccEEeccCCccccccchhhc-------CCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccC-C
Q 045580          408 SSLRRLYMHMNAFNGSIPGALR-------RSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCH-L  479 (764)
Q Consensus       408 ~~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l  479 (764)
                      ++|+.|++++|.+.+..|..+.       .+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..... .
T Consensus       402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~  480 (636)
T 4eco_A          402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE  480 (636)
T ss_dssp             SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred             CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence            4788888888888887777777       6778888999988888443344566888889999888888 55544322 2


Q ss_pred             -------CCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccc
Q 045580          480 -------SLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRG  552 (764)
Q Consensus       480 -------~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  552 (764)
                             ++|+.|++++|+++ .+|..+..                                                  
T Consensus       481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~--------------------------------------------------  509 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRA--------------------------------------------------  509 (636)
T ss_dssp             TEECTTGGGCCEEECCSSCCC-BCCGGGST--------------------------------------------------
T ss_pred             cccccccCCccEEECcCCcCC-ccChhhhh--------------------------------------------------
Confidence                   28889999999887 56654430                                                  


Q ss_pred             eEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecc------cccccccccCccccCCCCCCEEECc
Q 045580          553 IEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNL------SHNFLSGSIPQSLSNLKMIESLDLS  626 (764)
Q Consensus       553 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~LdLs  626 (764)
                                    ..+++|+.|+|++|++++ +|..++++++|+.|+|      ++|++.+.+|..++++++|+.|||+
T Consensus       510 --------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls  574 (636)
T 4eco_A          510 --------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG  574 (636)
T ss_dssp             --------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             --------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence                          014478889999999986 8888888999999988      5677888899999999999999999


Q ss_pred             CCcCcccCcccccCCCCCCeEeccCCcccc
Q 045580          627 HNDLSGQIPPQLTELNFLSNFNVSYNHLSG  656 (764)
Q Consensus       627 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  656 (764)
                      +|++ +.+|..+.  ++|+.||+++|++.+
T Consensus       575 ~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          575 SNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             SSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             CCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            9999 57888765  789999999998775

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-46  Score=424.76  Aligned_cols=503  Identities=21%  Similarity=0.249  Sum_probs=386.5

Q ss_pred             CcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEcc
Q 045580           74 LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLS  153 (764)
Q Consensus        74 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~  153 (764)
                      .+.++.++..++ .+|..+.  +++++|+|++|++++..+.+|.++++|++|++++|++++ ++...|+++++|++|+++
T Consensus         9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~   84 (570)
T 2z63_A            9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILT   84 (570)
T ss_dssp             TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECT
T ss_pred             CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCc
Confidence            345777777777 4555443  579999999999998888899999999999999999984 555678888888888888


Q ss_pred             CCCCC-CccccCCCCCCCCccEEEcCCCCCCCccH-hhhCCCCccEEEccCCCCCC-ccchHHhhcCCCCCEEEccCCcC
Q 045580          154 NSLVK-IETEEFPGLPEYQLKALNLRNCSLHALPS-FLLHQLDLRFIDLSHNKLQG-TFPSWLLQNNTKLDTLYLLNNSL  230 (764)
Q Consensus       154 ~~~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l  230 (764)
                      +|.+. .+...+..  +++|++|++++|++..++. .+..+++|++|++++|.+++ .+|..+ .++++|++|++++|.+
T Consensus        85 ~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l  161 (570)
T 2z63_A           85 GNPIQSLALGAFSG--LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKI  161 (570)
T ss_dssp             TCCCCEECTTTTTT--CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCC
T ss_pred             CCcCCccCHhhhcC--ccccccccccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCcc
Confidence            77663 22233332  3457777777777766654 46666677777777776664 245443 3556666666555555


Q ss_pred             ccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCC----cEEEcccCCCCccCCccccCCCCCCEEECCCCcccccC
Q 045580          231 SGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPEL----LSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGEL  306 (764)
Q Consensus       231 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L----~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  306 (764)
                      ++                       ..+..+. .+++|    +.|++++|.+++..|..+..+ +|+.|++++|......
T Consensus       162 ~~-----------------------~~~~~~~-~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~  216 (570)
T 2z63_A          162 QS-----------------------IYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV  216 (570)
T ss_dssp             CE-----------------------ECGGGGH-HHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTH
T ss_pred             ce-----------------------ecHHHcc-chhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccc
Confidence            42                       2333333 25555    778888888877767666655 7888888877544332


Q ss_pred             chhhhhCCCCCCEEEeeccccccee--------ecCCCC--CCceEEcccc-cCCCcccccccCCCCCCEEeCcCCccCC
Q 045580          307 PRQFLSGCFSLSFLSLSDNHLQGEV--------VFPNST--NLCWLYLNNN-HFSGKIQDGLSKATSLLELDLSNNMLYG  375 (764)
Q Consensus       307 p~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~--~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~  375 (764)
                      ....+..++.++...+....+....        .+..++  .++.++++++ .+.+..+..+..+++|+.|++++|.+. 
T Consensus       217 ~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-  295 (570)
T 2z63_A          217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-  295 (570)
T ss_dssp             HHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-
T ss_pred             hhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-
Confidence            2333466777776665543322110        122222  3567778777 677788889999999999999999998 


Q ss_pred             CccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcc--hhhhh
Q 045580          376 QIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSI--PIWIN  453 (764)
Q Consensus       376 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--p~~~~  453 (764)
                      .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+.  ..+++|+.|++++|++++..  |..+.
T Consensus       296 ~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~  370 (570)
T 2z63_A          296 RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDF  370 (570)
T ss_dssp             SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred             hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccc
Confidence            688888888 9999999999998 4443 3688999999999998877664  67899999999999998654  78899


Q ss_pred             cCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcCh-hhhcchhhcccccCCccccccccccchhhHHHhh
Q 045580          454 EFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPV-CFANVTLWTLGQAAGSFVLWETTQRISTEFEAYY  532 (764)
Q Consensus       454 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (764)
                      .+++|++|++++|++++..+ .+..+++|+.|++++|.+++..|. .+.+                              
T Consensus       371 ~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------  419 (570)
T 2z63_A          371 GTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLS------------------------------  419 (570)
T ss_dssp             TCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTT------------------------------
T ss_pred             ccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhc------------------------------
Confidence            99999999999999996444 499999999999999998865542 2222                              


Q ss_pred             hhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccc-cccC
Q 045580          533 NSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLS-GSIP  611 (764)
Q Consensus       533 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~~p  611 (764)
                                                          +++|+.|++++|++.+.+|..+..+++|+.|++++|+++ +.+|
T Consensus       420 ------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p  463 (570)
T 2z63_A          420 ------------------------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP  463 (570)
T ss_dssp             ------------------------------------CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred             ------------------------------------CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch
Confidence                                                458999999999999999999999999999999999998 6799


Q ss_pred             ccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-CCCCCCCccccCCCCCCCCC
Q 045580          612 QSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA-GQFANFDEQNYGGNSGLCGP  681 (764)
Q Consensus       612 ~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~~~~~~gn~~lc~~  681 (764)
                      ..++.+++|+.|++++|++++..|..+..+++|++|++++|++++..|.. ..+..++...+.+|+..|..
T Consensus       464 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence            99999999999999999999999999999999999999999999987764 56777888889999988764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.3e-44  Score=418.74  Aligned_cols=513  Identities=22%  Similarity=0.181  Sum_probs=412.4

Q ss_pred             CCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEE
Q 045580           72 KKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFK  151 (764)
Q Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~  151 (764)
                      +++++|||++|.|++..+.+|.++++|++|||++|+|++..+.+|.++++|++|+|++|+++ .+|...|.++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEE
Confidence            48999999999999888899999999999999999999888889999999999999999998 67777899999999999


Q ss_pred             ccCCCCC-CccccCCCCCCCCccEEEcCCCCCCC--ccHhhhCCCCccEEEccCCCCCCccchHHhhcCC----CCCEEE
Q 045580          152 LSNSLVK-IETEEFPGLPEYQLKALNLRNCSLHA--LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNT----KLDTLY  224 (764)
Q Consensus       152 l~~~~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~--lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~----~L~~L~  224 (764)
                      +++|.+. ++...+.  .+++|++|++++|.+..  +|..+..+++|++|++++|++++..+..+ ..+.    ....++
T Consensus       131 Ls~N~l~~l~~~~~~--~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~  207 (635)
T 4g8a_A          131 AVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLD  207 (635)
T ss_dssp             CTTSCCCCSTTCCCT--TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCCEEE
T ss_pred             CCCCcCCCCChhhhh--cCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc-cchhhhhhhhhhhh
Confidence            9999884 3333343  45579999999999964  57888999999999999999996555543 2333    345789


Q ss_pred             ccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCC------CccCCccccCCCCCCEEECC
Q 045580          225 LLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGF------EVRIPSSMSEMKRLESLDLS  298 (764)
Q Consensus       225 L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~------~~~~~~~l~~l~~L~~L~Ls  298 (764)
                      ++.|.+............++.+++.+|.....++......++.++...+..+..      .......+..+..+...++.
T Consensus       208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~  287 (635)
T 4g8a_A          208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  287 (635)
T ss_dssp             CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred             cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence            999999876545556667888999998776555555556678887776654332      22233445555666666655


Q ss_pred             CCcccc---cCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCC
Q 045580          299 SNNFSG---ELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG  375 (764)
Q Consensus       299 ~n~l~~---~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  375 (764)
                      .+....   .++. .+....+++.+.+.++.+.....+.....++.|++.+|.+....+.   .+..|+.+++..|....
T Consensus       288 ~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~  363 (635)
T 4g8a_A          288 LAYLDYYLDGIID-LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN  363 (635)
T ss_dssp             EECCCSCEEECTT-TTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCC
T ss_pred             hhhhcccccchhh-hhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCC
Confidence            543321   1122 2356778999999999887776777788999999999988765443   46788999999998764


Q ss_pred             CccccccCCCCCCEEECcCCCCCCCC--CCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcch-hh
Q 045580          376 QIPHWFGNLSGLQFLDISENQLSGSV--PSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP-IW  451 (764)
Q Consensus       376 ~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~  451 (764)
                      .  .....+++|+.|++++|.+....  +... .+.+|+.+++..+.... .+..+..+++|+.+++..+......+ ..
T Consensus       364 ~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~  440 (635)
T 4g8a_A          364 A--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV  440 (635)
T ss_dssp             B--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred             C--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccc
Confidence            3  34557899999999999986433  2233 67899999999998764 45567889999999999988765544 45


Q ss_pred             hhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC-CcChhhhcchhhcccccCCccccccccccchhhHHH
Q 045580          452 INEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG-PIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEA  530 (764)
Q Consensus       452 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (764)
                      +..+++++.++++.|.+.+..+..+..++.|+.|++++|++.+ ..|..+..                            
T Consensus       441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~----------------------------  492 (635)
T 4g8a_A          441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE----------------------------  492 (635)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT----------------------------
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh----------------------------
Confidence            7889999999999999998888889999999999999997543 34433332                            


Q ss_pred             hhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceeccccccccccc
Q 045580          531 YYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSI  610 (764)
Q Consensus       531 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~  610 (764)
                                                            +++|+.|||++|++++.+|..|+++++|++|+|++|+|++..
T Consensus       493 --------------------------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  534 (635)
T 4g8a_A          493 --------------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD  534 (635)
T ss_dssp             --------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             --------------------------------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC
Confidence                                                  458999999999999999999999999999999999999989


Q ss_pred             CccccCCCCCCEEECcCCcCcccCcccccCC-CCCCeEeccCCccccCCCCC
Q 045580          611 PQSLSNLKMIESLDLSHNDLSGQIPPQLTEL-NFLSNFNVSYNHLSGPTPNA  661 (764)
Q Consensus       611 p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g~~p~~  661 (764)
                      |..++++++|++|||++|+|++.+|..+..+ ++|++|++++|+++|.|...
T Consensus       535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~  586 (635)
T 4g8a_A          535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ  586 (635)
T ss_dssp             CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred             hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence            9999999999999999999999999999998 68999999999999998754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.4e-46  Score=418.36  Aligned_cols=458  Identities=21%  Similarity=0.246  Sum_probs=297.6

Q ss_pred             cEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccC
Q 045580           75 VELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSN  154 (764)
Q Consensus        75 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~  154 (764)
                      ++||+++|.++ .+|..+.  ++|++|+|++|.+++..|..|.++++|++|++++|++++..| ..++++++|++|++++
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCC
Confidence            46788888887 4555554  788888888888887777778888888888888888774333 5577777777777666


Q ss_pred             CCCCCccccCCCCCCCCccEEEcCCCCCCC--ccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCcc
Q 045580          155 SLVKIETEEFPGLPEYQLKALNLRNCSLHA--LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSG  232 (764)
Q Consensus       155 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  232 (764)
                      |.+..-+..    .+++|++|++++|.++.  +|..++.+++|++|++++|++++.    .+..+++|            
T Consensus        79 N~l~~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L------------  138 (520)
T 2z7x_B           79 NKLVKISCH----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHL------------  138 (520)
T ss_dssp             SCCCEEECC----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTS------------
T ss_pred             CceeecCcc----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh----hccccccc------------
Confidence            655311111    34456666666666643  456666666666666666666531    12233333            


Q ss_pred             CCCCCCCCCCccEEEccCCCC--CCCCChhHhhcCC-CCcEEEcccCCCCccCC-ccccCCCCCCEEECCCCc-------
Q 045580          233 NFQLPSSKHDLLRIDISHNKF--SGQLPGNMGKILP-ELLSLNLSENGFEVRIP-SSMSEMKRLESLDLSSNN-------  301 (764)
Q Consensus       233 ~~~~~~~~~~L~~L~ls~n~l--~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~-------  301 (764)
                               +|++|++++|.+  .+..|..+.. +. ....+++++|.+.+.++ ..+..+++|+.|++++|.       
T Consensus       139 ---------~L~~L~l~~n~l~~~~~~~~~l~~-l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  208 (520)
T 2z7x_B          139 ---------NISKVLLVLGETYGEKEDPEGLQD-FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY  208 (520)
T ss_dssp             ---------CEEEEEEEECTTTTSSCCTTTTTT-CCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred             ---------eeeEEEeecccccccccccccccc-cccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence                     114444444444  3444544332 22 23356677777665444 356667777777777775       


Q ss_pred             ccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccc
Q 045580          302 FSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWF  381 (764)
Q Consensus       302 l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  381 (764)
                      +.+.+| . +..+++|+.|++++|.+.+..                 +.+.. ..+ ..++|++|++++|.+++.+|..+
T Consensus       209 ~~~~~~-~-l~~l~~L~~L~l~~~~l~~~~-----------------~~~~~-~~~-~~~~L~~L~l~~n~l~~~~p~~~  267 (520)
T 2z7x_B          209 FLSILA-K-LQTNPKLSNLTLNNIETTWNS-----------------FIRIL-QLV-WHTTVWYFSISNVKLQGQLDFRD  267 (520)
T ss_dssp             HHHHHH-G-GGGCTTCCEEEEEEEEEEHHH-----------------HHHHH-HHH-HTSSCSEEEEEEEEEESCCCCCC
T ss_pred             eecchh-h-hccccchhhccccccccCHHH-----------------HHHHH-HHh-hhCcccEEEeecccccCccccch
Confidence            444444 2 356666777766666554321                 00000 000 12355555555555555555554


Q ss_pred             -----cCCCCCCEEECcCCCCCCCCC-Ccc-c---CCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhh
Q 045580          382 -----GNLSGLQFLDISENQLSGSVP-SSF-N---LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIW  451 (764)
Q Consensus       382 -----~~l~~L~~L~L~~n~l~~~~~-~~~-~---~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~  451 (764)
                           ..+++|+.+++++|.+  .+| ..+ .   ..+|+.|++++|.+.+..  .+..+++|++|++++|++++..|..
T Consensus       268 ~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~  343 (520)
T 2z7x_B          268 FDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFEN  343 (520)
T ss_dssp             CCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred             hhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhh
Confidence                 5556666666666665  233 111 1   145666666666654322  1246777888888888888777777


Q ss_pred             hhcCCCccEEEccCCcCCc--cCCccccCCCCCCEEeCCCCcCcCCcChh-hhcchhhcccccCCccccccccccchhhH
Q 045580          452 INEFSYLGILLLRGNQLKG--NIPNQLCHLSLLNILDLSYNKFNGPIPVC-FANVTLWTLGQAAGSFVLWETTQRISTEF  528 (764)
Q Consensus       452 ~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  528 (764)
                      ++.+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|.. +.                           
T Consensus       344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~---------------------------  396 (520)
T 2z7x_B          344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS---------------------------  396 (520)
T ss_dssp             CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC---------------------------
T ss_pred             hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc---------------------------
Confidence            7888888888888888875  45567788888888888888887655532 11                           


Q ss_pred             HHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceeccccccccc
Q 045580          529 EAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSG  608 (764)
Q Consensus       529 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  608 (764)
                                                             .++.|+.|++++|++++.+|..+.  ++|+.|++++|+++ 
T Consensus       397 ---------------------------------------~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-  434 (520)
T 2z7x_B          397 ---------------------------------------WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-  434 (520)
T ss_dssp             ---------------------------------------CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-
T ss_pred             ---------------------------------------cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-
Confidence                                                   134788888888888888877765  78999999999999 


Q ss_pred             ccCccccCCCCCCEEECcCCcCcccCccc-ccCCCCCCeEeccCCccccCCCCC
Q 045580          609 SIPQSLSNLKMIESLDLSHNDLSGQIPPQ-LTELNFLSNFNVSYNHLSGPTPNA  661 (764)
Q Consensus       609 ~~p~~l~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~~p~~  661 (764)
                      .+|..+..+++|+.|++++|+++. +|.. +..+++|++|++++|+++|.|+..
T Consensus       435 ~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~  487 (520)
T 2z7x_B          435 SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRI  487 (520)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCch
Confidence            888888899999999999999994 5655 889999999999999999988854

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=9.9e-46  Score=430.82  Aligned_cols=471  Identities=18%  Similarity=0.279  Sum_probs=240.7

Q ss_pred             CCcceeeeccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEEC-CCCCCCCcchhhhhCC-CCCCE-----EEC-
Q 045580           56 SGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDL-SSNQLTGNLQSVIANI-KSLEY-----LSL-  127 (764)
Q Consensus        56 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~~~~~~~l-~~L~~-----L~L-  127 (764)
                      .||.|..        -.+++.|+|++|.+.|.+|++|++|++|++|+| ++|.++|..|-..... ..+..     +.. 
T Consensus       315 ~GV~C~~--------~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~  386 (876)
T 4ecn_A          315 PGVDLDN--------NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH  386 (876)
T ss_dssp             TTEEECT--------TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTH
T ss_pred             CceEecC--------CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHh
Confidence            8888753        168999999999999999999999999999999 8888876533111100 00000     000 


Q ss_pred             ---------cCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCC--CCCCCccHhhhCCCCcc
Q 045580          128 ---------DDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRN--CSLHALPSFLLHQLDLR  196 (764)
Q Consensus       128 ---------s~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~--n~l~~lp~~l~~~~~L~  196 (764)
                               ....+.+.++ ..+...+..           ..   ........++.+.+..  |+++.+|..++++++|+
T Consensus       387 ~~~~~l~~~~~~~~s~l~~-~~l~~~~~~-----------~~---i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~  451 (876)
T 4ecn_A          387 YKKMFLDYDQRLNLSDLLQ-DAINRNPEM-----------KP---IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQ  451 (876)
T ss_dssp             HHHHHTCCCGGGGSCHHHH-HHHHTCTTS-----------CC---CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCC
T ss_pred             hhhhhhccCcchhhhHHHH-HHhhhCccc-----------cc---cccccccchhhceeccccCcccchhHHHhcCCCCC
Confidence                     0000000000 000000000           00   0001111233333333  55544777777777777


Q ss_pred             EEEccCCCCCCc-cchHHhhcCCCCCEEEccCCcCcc-CCCCCC--CCCCccEEEccCCCCCCCCChhHhhcCCCCcEEE
Q 045580          197 FIDLSHNKLQGT-FPSWLLQNNTKLDTLYLLNNSLSG-NFQLPS--SKHDLLRIDISHNKFSGQLPGNMGKILPELLSLN  272 (764)
Q Consensus       197 ~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~  272 (764)
                      +|+|++|++++. ++....   +      .+.|.+.+ .+....  .+++|++|++++|.+.+.+|..+.. +++|++|+
T Consensus       452 ~L~Ls~N~Lsg~~i~~~~~---~------~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~  521 (876)
T 4ecn_A          452 IIYFANSPFTYDNIAVDWE---D------ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLN  521 (876)
T ss_dssp             EEEEESCCCCGGGBSSSCS---C------TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEE
T ss_pred             EEECcCCcCCCCccccccc---c------cccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEE
Confidence            777777777751 111000   0      00000000 011111  2334444444444444444544433 45555555


Q ss_pred             cccCC-CCc-cCCccccCCC-------CCCEEECCCCcccccCch-hhhhCCCCCCEEEeecccccceeecCCCCCCceE
Q 045580          273 LSENG-FEV-RIPSSMSEMK-------RLESLDLSSNNFSGELPR-QFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWL  342 (764)
Q Consensus       273 L~~n~-~~~-~~~~~l~~l~-------~L~~L~Ls~n~l~~~~p~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L  342 (764)
                      +++|+ +++ .+|..++.++       +|++|++++|.+. .+|. ..+..+++|+.|                      
T Consensus       522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L----------------------  578 (876)
T 4ecn_A          522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL----------------------  578 (876)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE----------------------
T ss_pred             CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE----------------------
Confidence            55554 444 4444333322       5555555555554 4444 112344444444                      


Q ss_pred             EcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCC-CCEEECcCCCCCCCCCCcc-cC--CCccEEeccCC
Q 045580          343 YLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSG-LQFLDISENQLSGSVPSSF-NL--SSLRRLYMHMN  418 (764)
Q Consensus       343 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~-~~--~~L~~L~l~~n  418 (764)
                      ++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+ .+  ++|+.|++++|
T Consensus       579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             ECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred             ECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence            44444444 333 4444555555555555554 44444545554 555555555554 333333 11  22555555555


Q ss_pred             ccccccchh---hc--CCCCCCEEEccCCcCCCcchhhh-hcCCCccEEEccCCcCCccCCccccC--------CCCCCE
Q 045580          419 AFNGSIPGA---LR--RSSSLTVLDLRDNQFSGSIPIWI-NEFSYLGILLLRGNQLKGNIPNQLCH--------LSLLNI  484 (764)
Q Consensus       419 ~l~~~~~~~---~~--~~~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~  484 (764)
                      .+.+.+|..   +.  .+++|+.|++++|+++ .+|..+ ..+++|+.|+|++|+++ .+|..+..        +++|+.
T Consensus       655 ~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~  732 (876)
T 4ecn_A          655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTT  732 (876)
T ss_dssp             CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCE
T ss_pred             cCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccE
Confidence            554433311   11  2235666666666665 333333 35566666666666665 44433322        126666


Q ss_pred             EeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccc
Q 045580          485 LDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESY  564 (764)
Q Consensus       485 L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  564 (764)
                      |+|++|+++ .+|..+..                                                              
T Consensus       733 L~Ls~N~L~-~lp~~l~~--------------------------------------------------------------  749 (876)
T 4ecn_A          733 IDLRFNKLT-SLSDDFRA--------------------------------------------------------------  749 (876)
T ss_dssp             EECCSSCCC-CCCGGGST--------------------------------------------------------------
T ss_pred             EECCCCCCc-cchHHhhh--------------------------------------------------------------
Confidence            666666665 44433320                                                              


Q ss_pred             cccccccccEEEcccCcccccCCccccCccccceecccc------cccccccCccccCCCCCCEEECcCCcCcccCcccc
Q 045580          565 KGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSH------NFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQL  638 (764)
Q Consensus       565 ~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l  638 (764)
                        ..+++|+.|+|++|++++ +|..++++++|+.|+|++      |++.+.+|..++++++|+.|+|++|++ +.+|..+
T Consensus       750 --~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l  825 (876)
T 4ecn_A          750 --TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL  825 (876)
T ss_dssp             --TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred             --ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh
Confidence              013356666666666665 566666666666666654      677777787787888888888888887 5777765


Q ss_pred             cCCCCCCeEeccCCccccC
Q 045580          639 TELNFLSNFNVSYNHLSGP  657 (764)
Q Consensus       639 ~~l~~L~~L~ls~N~l~g~  657 (764)
                      .  ++|+.||+++|++...
T Consensus       826 ~--~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          826 T--PQLYILDIADNPNISI  842 (876)
T ss_dssp             C--SSSCEEECCSCTTCEE
T ss_pred             c--CCCCEEECCCCCCCcc
Confidence            5  5778888888877553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.4e-45  Score=413.26  Aligned_cols=475  Identities=20%  Similarity=0.212  Sum_probs=358.3

Q ss_pred             EECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCC
Q 045580           77 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSL  156 (764)
Q Consensus        77 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~  156 (764)
                      .|.+++.++ .+|..+.  ++|++|+|++|++++..|.+|.++++|++|++++|++++..+ ..+.++++          
T Consensus        10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~----------   75 (549)
T 2z81_A           10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGS----------   75 (549)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTT----------
T ss_pred             EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhcccccc----------
Confidence            466778887 4555443  789999999999998888889999999999999998874332 33444443          


Q ss_pred             CCCccccCCCCCCCCccEEEcCCCCCCCcc-HhhhCCCCccEEEccCCCCCCc-cchHHhhcCCCCCEEEccCCcCccCC
Q 045580          157 VKIETEEFPGLPEYQLKALNLRNCSLHALP-SFLLHQLDLRFIDLSHNKLQGT-FPSWLLQNNTKLDTLYLLNNSLSGNF  234 (764)
Q Consensus       157 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~~~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~  234 (764)
                                     |++|++++|.++.++ ..+..+++|++|++++|++++. .|.                       
T Consensus        76 ---------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----------------------  117 (549)
T 2z81_A           76 ---------------LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-----------------------  117 (549)
T ss_dssp             ---------------CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-----------------------
T ss_pred             ---------------CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-----------------------
Confidence                           344444444444443 3366666666666666666531 222                       


Q ss_pred             CCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCC
Q 045580          235 QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGC  314 (764)
Q Consensus       235 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l  314 (764)
                       ....+++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..++..+
T Consensus       118 -~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l  195 (549)
T 2z81_A          118 -LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADIL  195 (549)
T ss_dssp             -SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHST
T ss_pred             -hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhc
Confidence             22344455555555555333555433345888999999999998888888999999999999998886 7777777778


Q ss_pred             CCCCEEEeeccccccee-----ecCCCCCCceEEcccccCCCccc----ccccCCCCCCEEeCcCCccCCCc------cc
Q 045580          315 FSLSFLSLSDNHLQGEV-----VFPNSTNLCWLYLNNNHFSGKIQ----DGLSKATSLLELDLSNNMLYGQI------PH  379 (764)
Q Consensus       315 ~~L~~L~l~~n~l~~~~-----~~~~~~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~------~~  379 (764)
                      ++|++|++++|.+++..     ....+++|+.|++++|.+++..+    ..+..+++|+.+++++|.+.+..      ..
T Consensus       196 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  275 (549)
T 2z81_A          196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD  275 (549)
T ss_dssp             TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTT
T ss_pred             ccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchh
Confidence            99999999999888742     33457889999999998876443    34467889999999999877531      23


Q ss_pred             cccCCCCCCEEECcCCCCCCCC-----CCcc-cCCCccEEeccCCccccccchhh-cCCCCCCEEEccCCcCCCcchh--
Q 045580          380 WFGNLSGLQFLDISENQLSGSV-----PSSF-NLSSLRRLYMHMNAFNGSIPGAL-RRSSSLTVLDLRDNQFSGSIPI--  450 (764)
Q Consensus       380 ~~~~l~~L~~L~L~~n~l~~~~-----~~~~-~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p~--  450 (764)
                      .+..+++|+.|++.++.+....     +..+ ...+|+.|++++|.+. .+|..+ ..+++|++|++++|++++.+|.  
T Consensus       276 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  354 (549)
T 2z81_A          276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNS  354 (549)
T ss_dssp             CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccch
Confidence            4567889999999999876432     1112 3578999999999987 566555 6799999999999999987754  


Q ss_pred             -hhhcCCCccEEEccCCcCCccCC--ccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhh
Q 045580          451 -WINEFSYLGILLLRGNQLKGNIP--NQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTE  527 (764)
Q Consensus       451 -~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  527 (764)
                       .++.+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..                         
T Consensus       355 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-------------------------  408 (549)
T 2z81_A          355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW-------------------------  408 (549)
T ss_dssp             TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC-------------------------
T ss_pred             hhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc-------------------------
Confidence             37889999999999999986532  55888999999999999998 45543322                         


Q ss_pred             HHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccc
Q 045580          528 FEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLS  607 (764)
Q Consensus       528 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  607 (764)
                                                               +++|+.|++++|+++ .+|..+.  ++|+.|++++|+++
T Consensus       409 -----------------------------------------~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~  444 (549)
T 2z81_A          409 -----------------------------------------PEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD  444 (549)
T ss_dssp             -----------------------------------------CTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCS
T ss_pred             -----------------------------------------cccccEEECCCCCcc-cccchhc--CCceEEECCCCChh
Confidence                                                     347999999999998 4555443  68999999999999


Q ss_pred             cccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-CCCCCCCccccCCCCCCCCCC
Q 045580          608 GSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA-GQFANFDEQNYGGNSGLCGPR  682 (764)
Q Consensus       608 ~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~~~~~~gn~~lc~~~  682 (764)
                      +.+    +.+++|++|||++|+++ .+|. ...+++|++||+++|++++.+|.. ..+..++...+.||+..|..+
T Consensus       445 ~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          445 SFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             hhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            753    57899999999999999 6776 467999999999999999988864 677788888999999988643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.1e-44  Score=405.90  Aligned_cols=443  Identities=20%  Similarity=0.224  Sum_probs=337.9

Q ss_pred             ccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhcc
Q 045580           64 VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKN  143 (764)
Q Consensus        64 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~  143 (764)
                      +|..+.  ++|++|+|++|.+++..|.+|.++++|++|+|++|++++..|.+|+++++|++|++++|+++ .+|..   .
T Consensus        15 ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~   88 (520)
T 2z7x_B           15 VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---P   88 (520)
T ss_dssp             CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---C
T ss_pred             cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---c
Confidence            455554  89999999999999988899999999999999999999988999999999999999999998 66643   8


Q ss_pred             CCCCcEEEccCCCCCC-c-cccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCc--cEEEccCCCC--CCccchHHhhcC
Q 045580          144 HSKLQVFKLSNSLVKI-E-TEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDL--RFIDLSHNKL--QGTFPSWLLQNN  217 (764)
Q Consensus       144 l~~L~~L~l~~~~~~~-~-~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L--~~L~Ls~n~l--~~~~~~~~~~~l  217 (764)
                      +++|++|++++|.+.. . +..+.  .+++|++|++++|.+..  ..+..+++|  +.|++++|++  .+..|..+    
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~~~~--~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l----  160 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICKEFG--NMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGL----  160 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCGGGG--GCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT----
T ss_pred             cCCccEEeccCCccccccchhhhc--cCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccc----
Confidence            9999999999998854 2 23333  34579999999999965  356677777  9999999999  66666543    


Q ss_pred             CCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCC-------CCccCCccccCCC
Q 045580          218 TKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENG-------FEVRIPSSMSEMK  290 (764)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------~~~~~~~~l~~l~  290 (764)
                      ..++.                   ....+++++|.+.+.++......+++|+.|++++|.       +.+.+| .+..++
T Consensus       161 ~~l~~-------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~  220 (520)
T 2z7x_B          161 QDFNT-------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNP  220 (520)
T ss_dssp             TTCCE-------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCT
T ss_pred             ccccc-------------------ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcccc
Confidence            22220                   122345555655555665555557788888888876       555555 788899


Q ss_pred             CCCEEECCCCcccccCchhhhh--CCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccc-----cCCCCC
Q 045580          291 RLESLDLSSNNFSGELPRQFLS--GCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGL-----SKATSL  363 (764)
Q Consensus       291 ~L~~L~Ls~n~l~~~~p~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-----~~l~~L  363 (764)
                      +|+.|++++|.+.+..+..+..  ..++|++|++                      ++|.+++.+|..+     ..+++|
T Consensus       221 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l----------------------~~n~l~~~~p~~~~~~~~~~l~~L  278 (520)
T 2z7x_B          221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI----------------------SNVKLQGQLDFRDFDYSGTSLKAL  278 (520)
T ss_dssp             TCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE----------------------EEEEEESCCCCCCCCCCSCCCCEE
T ss_pred             chhhccccccccCHHHHHHHHHHhhhCcccEEEe----------------------ecccccCccccchhhcccccCcee
Confidence            9999999998887544333221  1234444444                      4444444555555     666777


Q ss_pred             CEEeCcCCccCCCcc-ccccCC---CCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEc
Q 045580          364 LELDLSNNMLYGQIP-HWFGNL---SGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDL  439 (764)
Q Consensus       364 ~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  439 (764)
                      +.+++++|.+  .+| ..+..+   .+|+.|++++|.+..... ...+++|++|++++|.+++..|..+..+++|++|++
T Consensus       279 ~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  355 (520)
T 2z7x_B          279 SIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL  355 (520)
T ss_dssp             EEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEEC
T ss_pred             Eeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEc
Confidence            7777777766  334 334333   567777777777654321 125678888888888888878888888999999999


Q ss_pred             cCCcCCC--cchhhhhcCCCccEEEccCCcCCccCCc-cccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccc
Q 045580          440 RDNQFSG--SIPIWINEFSYLGILLLRGNQLKGNIPN-QLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFV  516 (764)
Q Consensus       440 ~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~  516 (764)
                      ++|++++  .+|..++.+++|++|++++|++++.+|. .+..+++|+.|++++|++++.+|..+                
T Consensus       356 ~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l----------------  419 (520)
T 2z7x_B          356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL----------------  419 (520)
T ss_dssp             CSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC----------------
T ss_pred             cCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh----------------
Confidence            9999986  5667889999999999999999975665 47888999999999999986555332                


Q ss_pred             cccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCcccc
Q 045580          517 LWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEI  596 (764)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L  596 (764)
                                                                          .+.|+.||+++|+++ .+|..+..+++|
T Consensus       420 ----------------------------------------------------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L  446 (520)
T 2z7x_B          420 ----------------------------------------------------PPRIKVLDLHSNKIK-SIPKQVVKLEAL  446 (520)
T ss_dssp             ----------------------------------------------------CTTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred             ----------------------------------------------------cccCCEEECCCCccc-ccchhhhcCCCC
Confidence                                                                137899999999999 899988899999


Q ss_pred             ceecccccccccccCcc-ccCCCCCCEEECcCCcCcccCc
Q 045580          597 RALNLSHNFLSGSIPQS-LSNLKMIESLDLSHNDLSGQIP  635 (764)
Q Consensus       597 ~~L~Ls~N~l~~~~p~~-l~~l~~L~~LdLs~N~l~~~ip  635 (764)
                      +.|++++|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus       447 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          447 QELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            99999999999 56665 9999999999999999997654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.3e-45  Score=423.63  Aligned_cols=470  Identities=16%  Similarity=0.197  Sum_probs=368.9

Q ss_pred             CCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccEE
Q 045580           96 THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKAL  175 (764)
Q Consensus        96 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  175 (764)
                      .+++.|+|++|.+.|.+|.+++++++|++|+|++|.+.....  .++.                 ...            
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~--~~~~-----------------~~~------------  129 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER--LFGP-----------------KGI------------  129 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCC--SBST-----------------TSB------------
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCc--cccc-----------------ccc------------
Confidence            578899999999999999999999999999999997631100  0000                 000            


Q ss_pred             EcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEc--cCCCC
Q 045580          176 NLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDI--SHNKF  253 (764)
Q Consensus       176 ~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l--s~n~l  253 (764)
                            ...+|...  +..|+ ++++.+.+.+.+|..+...+..+..+++....+..     .....++.+.+  ..|++
T Consensus       130 ------~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~~l~~l~l~~~~n~l  195 (636)
T 4eco_A          130 ------SANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-----SSRITLKDTQIGQLSNNI  195 (636)
T ss_dssp             ------CTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC-----CCCCCCCTTTTTCCSCEE
T ss_pred             ------ccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc-----ccccchhhhhhccccCCC
Confidence                  01233333  33455 66666666665555432222222222333222221     11122222333  35788


Q ss_pred             CCCCChhHhhcCCCCcEEEcccCCCCcc-----------------CCcccc--CCCCCCEEECCCCcccccCchhhhhCC
Q 045580          254 SGQLPGNMGKILPELLSLNLSENGFEVR-----------------IPSSMS--EMKRLESLDLSSNNFSGELPRQFLSGC  314 (764)
Q Consensus       254 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~~l  314 (764)
                      ++ +|..++. +++|++|+|++|.+++.                 +|..++  ++++|++|++++|.+.+.+|..+ ..+
T Consensus       196 ~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l  272 (636)
T 4eco_A          196 TF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KAL  272 (636)
T ss_dssp             EE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTC
T ss_pred             cc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcC
Confidence            87 8998865 99999999999999986                 999999  99999999999999999999765 789


Q ss_pred             CCCCEEEeeccc-ccc-ee--ecCC------CCCCceEEcccccCCCcccc--cccCCCCCCEEeCcCCccCCCcccccc
Q 045580          315 FSLSFLSLSDNH-LQG-EV--VFPN------STNLCWLYLNNNHFSGKIQD--GLSKATSLLELDLSNNMLYGQIPHWFG  382 (764)
Q Consensus       315 ~~L~~L~l~~n~-l~~-~~--~~~~------~~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~  382 (764)
                      ++|++|++++|+ +++ ..  .+..      +++|++|++++|.++ .+|.  .++.+++|++|++++|.++|.+| .+.
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~  350 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG  350 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence            999999999998 876 32  3444      489999999999999 7888  89999999999999999998888 899


Q ss_pred             CCCCCCEEECcCCCCCCCCCCcc-cCCC-ccEEeccCCccccccchhhcCCC--CCCEEEccCCcCCCcchhhhh-----
Q 045580          383 NLSGLQFLDISENQLSGSVPSSF-NLSS-LRRLYMHMNAFNGSIPGALRRSS--SLTVLDLRDNQFSGSIPIWIN-----  453 (764)
Q Consensus       383 ~l~~L~~L~L~~n~l~~~~~~~~-~~~~-L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~L~~n~l~~~~p~~~~-----  453 (764)
                      .+++|++|++++|+++ .+|..+ .+++ |+.|++++|.++ .+|..+..++  +|+.|++++|++++..|..+.     
T Consensus       351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~  428 (636)
T 4eco_A          351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT  428 (636)
T ss_dssp             EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred             CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence            9999999999999999 666666 8888 999999999998 7787777655  899999999999999998888     


Q ss_pred             --cCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHh
Q 045580          454 --EFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAY  531 (764)
Q Consensus       454 --~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (764)
                        .+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|.........                         
T Consensus       429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~-------------------------  482 (636)
T 4eco_A          429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE-------------------------  482 (636)
T ss_dssp             CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE-------------------------
T ss_pred             cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc-------------------------
Confidence              7889999999999999444444567999999999999998 565433211000                         


Q ss_pred             hhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCcccc--Cccccceecccccccccc
Q 045580          532 YNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIG--SLSEIRALNLSHNFLSGS  609 (764)
Q Consensus       532 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~--~l~~L~~L~Ls~N~l~~~  609 (764)
                                                       ....+++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ 
T Consensus       483 ---------------------------------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-  527 (636)
T 4eco_A          483 ---------------------------------NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-  527 (636)
T ss_dssp             ---------------------------------ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred             ---------------------------------cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-
Confidence                                             0012448999999999999 7999887  99999999999999997 


Q ss_pred             cCccccCCCCCCEEEC------cCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCCCCCC
Q 045580          610 IPQSLSNLKMIESLDL------SHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCG  680 (764)
Q Consensus       610 ~p~~l~~l~~L~~LdL------s~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~  680 (764)
                      +|..++++++|+.|+|      ++|++.+.+|..+..+++|+.|++++|++ +.+|... +..++...+.+|+..|-
T Consensus       528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNISI  602 (636)
T ss_dssp             CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTCEE
T ss_pred             cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCccc
Confidence            9999999999999999      56889999999999999999999999999 7888763 36778888899998764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.1e-42  Score=395.04  Aligned_cols=461  Identities=20%  Similarity=0.204  Sum_probs=295.3

Q ss_pred             CCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEc
Q 045580           73 KLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKL  152 (764)
Q Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l  152 (764)
                      ..+++|+++|.+++ +|..+.  ++|++|+|++|.+++..+.+|.++++|++|++++|++++. ++..|.++++|++|++
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEEC
Confidence            44889999999995 565554  8999999999999988888999999999999999998843 3356777777777666


Q ss_pred             cCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCC-ccchHHhhcCCCCCEEEccCCcCc
Q 045580          153 SNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQG-TFPSWLLQNNTKLDTLYLLNNSLS  231 (764)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~  231 (764)
                      ++|.+.                         .+|..  .+++|++|++++|++++ .+|.. +.++++|++|++++|.++
T Consensus       108 s~N~l~-------------------------~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          108 SHNRLQ-------------------------NISCC--PMASLRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             TTSCCC-------------------------EECSC--CCTTCSEEECCSSCCSBCCCCGG-GGGCTTCCEEEEECSBCC
T ss_pred             CCCcCC-------------------------ccCcc--ccccCCEEECCCCCccccCchHh-hcccCcccEEecCCCccc
Confidence            666543                         33332  34445555555554442 11222 234445555555444443


Q ss_pred             cCCCCCCCCCC--ccEEEccCCCC--CCCCChhHhhcCC-CCcEEEcccCCCCccCCc-cccCCCCCCEEECCCCc----
Q 045580          232 GNFQLPSSKHD--LLRIDISHNKF--SGQLPGNMGKILP-ELLSLNLSENGFEVRIPS-SMSEMKRLESLDLSSNN----  301 (764)
Q Consensus       232 ~~~~~~~~~~~--L~~L~ls~n~l--~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~Ls~n~----  301 (764)
                      +.  ....+++  |++|++++|.+  ++..|..+.. +. ..-.++++.|.+.+.++. .+..+++|+.+++++|.    
T Consensus       160 ~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~-l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  236 (562)
T 3a79_B          160 QL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ  236 (562)
T ss_dssp             TT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE-CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH
T ss_pred             cC--chhhhhhceeeEEEeecccccccccCcccccc-cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc
Confidence            21  1111222  25555555555  4444444322 21 111445666665554432 34456666666666663    


Q ss_pred             -ccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCcccc
Q 045580          302 -FSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHW  380 (764)
Q Consensus       302 -l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  380 (764)
                       +.+.++ . +..+++|+.++++++.+.+..                 +.+ .+.. ...++|++|++++|.+++.+|..
T Consensus       237 ~l~~~~~-~-l~~l~~L~~L~L~~~~l~~~~-----------------~~~-~~~~-~~~~~L~~L~l~~n~l~~~ip~~  295 (562)
T 3a79_B          237 RLMTFLS-E-LTRGPTLLNVTLQHIETTWKC-----------------SVK-LFQF-FWPRPVEYLNIYNLTITERIDRE  295 (562)
T ss_dssp             HHHHHHH-H-HHSCSSCEEEEEEEEEECHHH-----------------HHH-HHHH-HTTSSEEEEEEEEEEECSCCCCC
T ss_pred             hHHHHHH-H-HhccCcceEEEecCCcCcHHH-----------------HHH-HHHh-hhcccccEEEEeccEeeccccch
Confidence             111111 1 345555555555554443211                 110 0111 11235566666666665555555


Q ss_pred             c-----cCCCCCCEEECcCCCCCCCCCCc-c----cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchh
Q 045580          381 F-----GNLSGLQFLDISENQLSGSVPSS-F----NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPI  450 (764)
Q Consensus       381 ~-----~~l~~L~~L~L~~n~l~~~~~~~-~----~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~  450 (764)
                      +     ..++.|+.+++..+.+  .+|.. +    ...+|+.|++++|.+....  ....+++|++|++++|++++..|.
T Consensus       296 ~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~  371 (562)
T 3a79_B          296 EFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQ  371 (562)
T ss_dssp             CCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT
T ss_pred             hhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhh
Confidence            4     4455555555555554  23311 1    2245777777777665322  125677888888888888887888


Q ss_pred             hhhcCCCccEEEccCCcCCc--cCCccccCCCCCCEEeCCCCcCcCCcChh-hhcchhhcccccCCccccccccccchhh
Q 045580          451 WINEFSYLGILLLRGNQLKG--NIPNQLCHLSLLNILDLSYNKFNGPIPVC-FANVTLWTLGQAAGSFVLWETTQRISTE  527 (764)
Q Consensus       451 ~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~  527 (764)
                      .++.+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|.. +.                          
T Consensus       372 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--------------------------  425 (562)
T 3a79_B          372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA--------------------------  425 (562)
T ss_dssp             TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC--------------------------
T ss_pred             hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc--------------------------
Confidence            88888888888888888885  33566788889999999999888755542 21                          


Q ss_pred             HHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccc
Q 045580          528 FEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLS  607 (764)
Q Consensus       528 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  607 (764)
                                                              .+++|+.|++++|++++.+|..+.  ++|+.|+|++|+++
T Consensus       426 ----------------------------------------~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~  463 (562)
T 3a79_B          426 ----------------------------------------WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM  463 (562)
T ss_dssp             ----------------------------------------CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred             ----------------------------------------CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence                                                    134788999999999888877665  78999999999998


Q ss_pred             cccCccccCCCCCCEEECcCCcCcccCccc-ccCCCCCCeEeccCCccccCCCCCCC
Q 045580          608 GSIPQSLSNLKMIESLDLSHNDLSGQIPPQ-LTELNFLSNFNVSYNHLSGPTPNAGQ  663 (764)
Q Consensus       608 ~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~~p~~~~  663 (764)
                       .+|..+..+++|+.|+|++|++++ +|.. +..+++|+.|++++|++.|.||..+.
T Consensus       464 -~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  518 (562)
T 3a79_B          464 -SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY  518 (562)
T ss_dssp             -CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred             -ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence             788888899999999999999994 6665 99999999999999999999986543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.4e-42  Score=404.43  Aligned_cols=357  Identities=18%  Similarity=0.250  Sum_probs=302.5

Q ss_pred             CCCCCCCChhHhhcCCCCcEEEcccCCCCc-----------------cCCcccc--CCCCCCEEECCCCcccccCchhhh
Q 045580          251 NKFSGQLPGNMGKILPELLSLNLSENGFEV-----------------RIPSSMS--EMKRLESLDLSSNNFSGELPRQFL  311 (764)
Q Consensus       251 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~-----------------~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~  311 (764)
                      |++++ +|..+.. +++|++|+|++|.+++                 .+|..++  ++++|++|++++|.+.+.+|..+ 
T Consensus       435 N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-  511 (876)
T 4ecn_A          435 NRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-  511 (876)
T ss_dssp             CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-
T ss_pred             Ccccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-
Confidence            77776 8888765 9999999999999998                 3888887  99999999999999998999765 


Q ss_pred             hCCCCCCEEEeeccc-ccc-ee---------ecCCCCCCceEEcccccCCCcccc--cccCCCCCCEEeCcCCccCCCcc
Q 045580          312 SGCFSLSFLSLSDNH-LQG-EV---------VFPNSTNLCWLYLNNNHFSGKIQD--GLSKATSLLELDLSNNMLYGQIP  378 (764)
Q Consensus       312 ~~l~~L~~L~l~~n~-l~~-~~---------~~~~~~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~  378 (764)
                      ..+++|+.|++++|+ +++ ..         .+..+++|+.|++++|.++ .+|.  .+.++++|+.|++++|.++ .+|
T Consensus       512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence            789999999999998 776 22         2345569999999999999 7888  8999999999999999998 788


Q ss_pred             ccccCCCCCCEEECcCCCCCCCCCCcc-cCCC-ccEEeccCCccccccchhhcCCCC--CCEEEccCCcCCCcchhh---
Q 045580          379 HWFGNLSGLQFLDISENQLSGSVPSSF-NLSS-LRRLYMHMNAFNGSIPGALRRSSS--LTVLDLRDNQFSGSIPIW---  451 (764)
Q Consensus       379 ~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~-L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~L~~n~l~~~~p~~---  451 (764)
                       .|..+++|+.|++++|.++ .+|..+ .+++ |+.|++++|.++ .+|..+..++.  |+.|++++|++++.+|..   
T Consensus       590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~  666 (876)
T 4ecn_A          590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS  666 (876)
T ss_dssp             -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred             -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence             8999999999999999999 677666 7888 999999999998 77877777654  999999999999876632   


Q ss_pred             hh--cCCCccEEEccCCcCCccCCccc-cCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhH
Q 045580          452 IN--EFSYLGILLLRGNQLKGNIPNQL-CHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEF  528 (764)
Q Consensus       452 ~~--~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  528 (764)
                      +.  .+++|+.|++++|+++ .+|..+ ..+++|+.|++++|+++ .+|..+......                      
T Consensus       667 l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~----------------------  722 (876)
T 4ecn_A          667 MDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG----------------------  722 (876)
T ss_dssp             TTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS----------------------
T ss_pred             hccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc----------------------
Confidence            23  3458999999999999 566554 58999999999999998 666544321100                      


Q ss_pred             HHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCcccc--Cccccceeccccccc
Q 045580          529 EAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIG--SLSEIRALNLSHNFL  606 (764)
Q Consensus       529 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~--~l~~L~~L~Ls~N~l  606 (764)
                                                          ....+++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++
T Consensus       723 ------------------------------------~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L  765 (876)
T 4ecn_A          723 ------------------------------------NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF  765 (876)
T ss_dssp             ------------------------------------CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCC
T ss_pred             ------------------------------------cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCC
Confidence                                                0012458999999999999 7899987  999999999999999


Q ss_pred             ccccCccccCCCCCCEEECcC------CcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCCCCC
Q 045580          607 SGSIPQSLSNLKMIESLDLSH------NDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLC  679 (764)
Q Consensus       607 ~~~~p~~l~~l~~L~~LdLs~------N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc  679 (764)
                      ++ +|..++++++|+.|+|++      |++.+.+|..+..+++|+.|++++|++ +.+|... +..++...+.+|+...
T Consensus       766 ~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          766 SS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNIS  841 (876)
T ss_dssp             SS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTCE
T ss_pred             Cc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCCc
Confidence            97 899999999999999977      889999999999999999999999999 8899863 3577778888888643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8.7e-41  Score=386.54  Aligned_cols=525  Identities=21%  Similarity=0.190  Sum_probs=379.5

Q ss_pred             EEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCC
Q 045580           76 ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNS  155 (764)
Q Consensus        76 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~  155 (764)
                      +.+-++-.++ .+|..+.  +++++|||++|+|++..+.+|.++++|++|+|++|+++ .++...|.++++|++|+|++|
T Consensus        35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred             EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCC
Confidence            3455555666 4565443  57999999999999888889999999999999999998 566678999999999999998


Q ss_pred             CCC-CccccCCCCCCCCccEEEcCCCCCCCccH-hhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccC
Q 045580          156 LVK-IETEEFPGLPEYQLKALNLRNCSLHALPS-FLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGN  233 (764)
Q Consensus       156 ~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  233 (764)
                      .+. ++...|..  +++|++|++++|+++.+|. .++++++|++|++++|++++......+..+++|++|++++|.+++.
T Consensus       111 ~l~~l~~~~f~~--L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          111 PIQSLALGAFSG--LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             CCCEECGGGGTT--CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             cCCCCCHHHhcC--CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            874 34444444  3468899999888887764 4778888899999888887432233345788888888888888754


Q ss_pred             CCCC-----CCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCcc-CCccccCCCCCCEEECCCCcccc---
Q 045580          234 FQLP-----SSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVR-IPSSMSEMKRLESLDLSSNNFSG---  304 (764)
Q Consensus       234 ~~~~-----~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~---  304 (764)
                      ....     ........++++.|.+. .++...+. ...++.+++.+|..... .+..+..+..++...+..+....   
T Consensus       189 ~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~  266 (635)
T 4g8a_A          189 YCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN  266 (635)
T ss_dssp             CGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred             ccccccchhhhhhhhhhhhcccCccc-ccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence            2111     01123446777777776 44444433 34566677777654422 23345566666655543322111   


Q ss_pred             --cCchhhhhCCCCCCEEEeeccccccee-----ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCc
Q 045580          305 --ELPRQFLSGCFSLSFLSLSDNHLQGEV-----VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI  377 (764)
Q Consensus       305 --~~p~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  377 (764)
                        ......+.....+....+..+......     .+....+++.+.+..+.+....  .+.....++.|++.+|.+.+..
T Consensus       267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~  344 (635)
T 4g8a_A          267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFP  344 (635)
T ss_dssp             CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCC
T ss_pred             cccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcC
Confidence              111112233445555555444332211     3445667888888877765432  3556778888998888887543


Q ss_pred             cccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCcccc--ccchhhcCCCCCCEEEccCCcCCCcchhhhhcC
Q 045580          378 PHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNG--SIPGALRRSSSLTVLDLRDNQFSGSIPIWINEF  455 (764)
Q Consensus       378 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l  455 (764)
                      +.   .+..|+.+++..|..... +....+++|+.++++.|.+..  ..+..+..+.+|+.+++..|.... .+..+..+
T Consensus       345 ~~---~l~~L~~l~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l  419 (635)
T 4g8a_A          345 TL---KLKSLKRLTFTSNKGGNA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGL  419 (635)
T ss_dssp             CC---BCTTCCEEEEESCCSCCB-CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTC
T ss_pred             cc---cchhhhhcccccccCCCC-cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccccc
Confidence            32   456788888888876643 333378889999999887753  345666778889999998887763 45567788


Q ss_pred             CCccEEEccCCcCCccCC-ccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhh
Q 045580          456 SYLGILLLRGNQLKGNIP-NQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNS  534 (764)
Q Consensus       456 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (764)
                      ++|+.+++.+|......+ ..+..+++++.++++.|.+.+..|..+..                                
T Consensus       420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~--------------------------------  467 (635)
T 4g8a_A          420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--------------------------------  467 (635)
T ss_dssp             TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------------------
T ss_pred             ccccchhhhhcccccccccccccccccccccccccccccccccccccc--------------------------------
Confidence            889999998887665543 45677888999999999887666554432                                


Q ss_pred             hhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcc-cccCCccccCccccceecccccccccccCcc
Q 045580          535 TLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNEL-TGDIPSEIGSLSEIRALNLSHNFLSGSIPQS  613 (764)
Q Consensus       535 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l-~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~  613 (764)
                                                        ++.++.|++++|++ .+.+|..+..+++|+.|+|++|++++.+|..
T Consensus       468 ----------------------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~  513 (635)
T 4g8a_A          468 ----------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA  513 (635)
T ss_dssp             ----------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             ----------------------------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence                                              34789999999985 4568889999999999999999999999999


Q ss_pred             ccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC-CCC-CCCCccccCCCCCCCCC
Q 045580          614 LSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA-GQF-ANFDEQNYGGNSGLCGP  681 (764)
Q Consensus       614 l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~-~~~-~~~~~~~~~gn~~lc~~  681 (764)
                      |+++++|++|+|++|+|++..|..|..+++|++||+++|++++..|.. ..+ .+++...+.|||+.|..
T Consensus       514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            999999999999999999999999999999999999999999998875 233 56777889999999964

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.2e-41  Score=380.76  Aligned_cols=442  Identities=21%  Similarity=0.230  Sum_probs=325.5

Q ss_pred             ccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhcc
Q 045580           64 VNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKN  143 (764)
Q Consensus        64 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~  143 (764)
                      +|..+.  ++|++|+|++|.+++..+.+|.++++|++|+|++|++++..|.+|.++++|++|++++|+++ .+|..   .
T Consensus        46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~  119 (562)
T 3a79_B           46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---P  119 (562)
T ss_dssp             CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---C
T ss_pred             CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---c
Confidence            455443  89999999999999988899999999999999999999988999999999999999999998 56632   4


Q ss_pred             CCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCc--cHhhhCCCCccEEEccCCCCCCccchHHhhcCCCC-
Q 045580          144 HSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHAL--PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKL-  220 (764)
Q Consensus       144 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~l--p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L-  220 (764)
                      +++                         |++|++++|+++.+  |..+.++++|++|++++|++++..    +..+++| 
T Consensus       120 l~~-------------------------L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~  170 (562)
T 3a79_B          120 MAS-------------------------LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLH  170 (562)
T ss_dssp             CTT-------------------------CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSC
T ss_pred             ccc-------------------------CCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhce
Confidence            444                         55555555555443  467777888888888888876421    2344555 


Q ss_pred             -CEEEccCCcC--ccCCCCCCCCCCc----cEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCC----ccCCccccCC
Q 045580          221 -DTLYLLNNSL--SGNFQLPSSKHDL----LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFE----VRIPSSMSEM  289 (764)
Q Consensus       221 -~~L~L~~n~l--~~~~~~~~~~~~L----~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~----~~~~~~l~~l  289 (764)
                       ++|++++|.+  ++.  .+..+..+    ..+++++|.+.+.++......+++|+.|++++|...    ......+..+
T Consensus       171 L~~L~L~~n~l~~~~~--~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l  248 (562)
T 3a79_B          171 LSCILLDLVSYHIKGG--ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG  248 (562)
T ss_dssp             EEEEEEEESSCCCCSS--SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC
T ss_pred             eeEEEeeccccccccc--CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc
Confidence             8888888877  432  22222222    256788888887777766666889999999988521    1123457788


Q ss_pred             CCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccc-----cCCCCCC
Q 045580          290 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGL-----SKATSLL  364 (764)
Q Consensus       290 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~  364 (764)
                      ++|+.++++++.+.+.....+..                    ....++|++|++++|.+++.+|..+     ..++.|+
T Consensus       249 ~~L~~L~L~~~~l~~~~~~~~~~--------------------~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~  308 (562)
T 3a79_B          249 PTLLNVTLQHIETTWKCSVKLFQ--------------------FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM  308 (562)
T ss_dssp             SSCEEEEEEEEEECHHHHHHHHH--------------------HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEE
T ss_pred             CcceEEEecCCcCcHHHHHHHHH--------------------hhhcccccEEEEeccEeeccccchhhhcccccchhee
Confidence            89999999888776432221110                    0011245555555555555555554     4555555


Q ss_pred             EEeCcCCccCCCcc-ccccC---CCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEcc
Q 045580          365 ELDLSNNMLYGQIP-HWFGN---LSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLR  440 (764)
Q Consensus       365 ~L~L~~n~l~~~~~-~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  440 (764)
                      .+++..+.+  .+| ..+..   ..+|++|++++|.+..... ...+++|++|++++|.+++..|..+..+++|+.|+++
T Consensus       309 ~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  385 (562)
T 3a79_B          309 IEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ  385 (562)
T ss_dssp             EEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECC
T ss_pred             hhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECC
Confidence            555555555  233 22221   2568888888887753321 1257788889999998888888888999999999999


Q ss_pred             CCcCCC--cchhhhhcCCCccEEEccCCcCCccCCc-cccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccc
Q 045580          441 DNQFSG--SIPIWINEFSYLGILLLRGNQLKGNIPN-QLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVL  517 (764)
Q Consensus       441 ~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~  517 (764)
                      +|++++  .+|..+..+++|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+.                
T Consensus       386 ~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~----------------  449 (562)
T 3a79_B          386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP----------------  449 (562)
T ss_dssp             SSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC----------------
T ss_pred             CCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc----------------
Confidence            999986  3456788999999999999999975654 578899999999999999865553221                


Q ss_pred             ccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccc
Q 045580          518 WETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIR  597 (764)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~  597 (764)
                                                                          +.|+.|+|++|+++ .+|..+..+++|+
T Consensus       450 ----------------------------------------------------~~L~~L~L~~N~l~-~ip~~~~~l~~L~  476 (562)
T 3a79_B          450 ----------------------------------------------------PKVKVLDLHNNRIM-SIPKDVTHLQALQ  476 (562)
T ss_dssp             ----------------------------------------------------TTCSEEECCSSCCC-CCCTTTTSSCCCS
T ss_pred             ----------------------------------------------------CcCCEEECCCCcCc-ccChhhcCCCCCC
Confidence                                                                37899999999999 7888888999999


Q ss_pred             eecccccccccccCcc-ccCCCCCCEEECcCCcCcccCc
Q 045580          598 ALNLSHNFLSGSIPQS-LSNLKMIESLDLSHNDLSGQIP  635 (764)
Q Consensus       598 ~L~Ls~N~l~~~~p~~-l~~l~~L~~LdLs~N~l~~~ip  635 (764)
                      .|+|++|+++ .+|.. ++.+++|+.|++++|++.+..|
T Consensus       477 ~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          477 ELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             EEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             EEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            9999999999 56665 9999999999999999997665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.6e-41  Score=370.95  Aligned_cols=321  Identities=24%  Similarity=0.256  Sum_probs=153.8

Q ss_pred             CCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcE
Q 045580           70 ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQV  149 (764)
Q Consensus        70 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~  149 (764)
                      +.++|++|++++|.+ +.+|.+++++++|++|++++|.++|.+|..++++++|+++++.+|..                 
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------------   70 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------------   70 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------------
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------------
Confidence            346666666666666 45666666666666666666666666666666555554444433310                 


Q ss_pred             EEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCc
Q 045580          150 FKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNS  229 (764)
Q Consensus       150 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  229 (764)
                                          .++++|++++|.++.+|..   .++|++|++++|++++ +|.    ..++|++|++++|.
T Consensus        71 --------------------~~l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~  122 (454)
T 1jl5_A           71 --------------------RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNN  122 (454)
T ss_dssp             --------------------HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSC
T ss_pred             --------------------cCCCEEEecCCccccCCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCc
Confidence                                1366666677766666652   3567788888887774 554    24667777777777


Q ss_pred             CccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchh
Q 045580          230 LSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQ  309 (764)
Q Consensus       230 l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  309 (764)
                      +++....   .++|++|++++|+++ .+|. +. .+++|++|++++|++++ +|..+   ++|++|++++|.+.+ +|. 
T Consensus       123 l~~l~~~---~~~L~~L~L~~n~l~-~lp~-~~-~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~-  190 (454)
T 1jl5_A          123 LKALSDL---PPLLEYLGVSNNQLE-KLPE-LQ-NSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPE-  190 (454)
T ss_dssp             CSCCCSC---CTTCCEEECCSSCCS-SCCC-CT-TCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCC-
T ss_pred             cCcccCC---CCCCCEEECcCCCCC-CCcc-cC-CCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Ccc-
Confidence            6643221   245666666666665 3552 32 36666666666666653 44332   356666666666653 442 


Q ss_pred             hhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCE
Q 045580          310 FLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQF  389 (764)
Q Consensus       310 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  389 (764)
                       +..+++|+.|++++|.+++....                          .++|++|++++|.++ .+|. +..+++|++
T Consensus       191 -~~~l~~L~~L~l~~N~l~~l~~~--------------------------~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~  241 (454)
T 1jl5_A          191 -LQNLPFLTAIYADNNSLKKLPDL--------------------------PLSLESIVAGNNILE-ELPE-LQNLPFLTT  241 (454)
T ss_dssp             -CTTCTTCCEEECCSSCCSSCCCC--------------------------CTTCCEEECCSSCCS-SCCC-CTTCTTCCE
T ss_pred             -ccCCCCCCEEECCCCcCCcCCCC--------------------------cCcccEEECcCCcCC-cccc-cCCCCCCCE
Confidence             34555555555555555432211                          124444555544444 3332 444445555


Q ss_pred             EECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCC
Q 045580          390 LDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLK  469 (764)
Q Consensus       390 L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  469 (764)
                      |++++|++++ +|..  .++|+.|++++|++++ +|..   +++|+.|++++|++++ +|.   -.++|++|++++|+++
T Consensus       242 L~l~~N~l~~-l~~~--~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~  310 (454)
T 1jl5_A          242 IYADNNLLKT-LPDL--PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIR  310 (454)
T ss_dssp             EECCSSCCSS-CCSC--CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCS
T ss_pred             EECCCCcCCc-cccc--ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCC
Confidence            5555554443 1211  2445555555554443 2221   2455555555555553 111   0135555555555555


Q ss_pred             ccCCccccCC-CCCCEEeCCCCcCc
Q 045580          470 GNIPNQLCHL-SLLNILDLSYNKFN  493 (764)
Q Consensus       470 ~~~~~~~~~l-~~L~~L~Ls~n~l~  493 (764)
                      + ++    .+ ++|++|++++|+++
T Consensus       311 ~-i~----~~~~~L~~L~Ls~N~l~  330 (454)
T 1jl5_A          311 S-LC----DLPPSLEELNVSNNKLI  330 (454)
T ss_dssp             E-EC----CCCTTCCEEECCSSCCS
T ss_pred             c-cc----CCcCcCCEEECCCCccc
Confidence            3 11    12 35555565555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3e-39  Score=357.59  Aligned_cols=374  Identities=20%  Similarity=0.175  Sum_probs=316.2

Q ss_pred             CCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccC-CccccCCCCCCEEECC
Q 045580          220 LDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRI-PSSMSEMKRLESLDLS  298 (764)
Q Consensus       220 L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~Ls  298 (764)
                      -+.++.+++.++..+.   -.++|++|++++|.+.+..|..+. .+++|++|++++|.+.+.+ +..|..+++|++|+++
T Consensus        12 ~~~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           12 GYNAICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TTEEECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTS-SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             ccccCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhc-cCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            3467777887776544   447899999999999865566665 4999999999999987554 5679999999999999


Q ss_pred             CCcccccCchhhhhCCCCCCEEEeeccccccee----ecCCCCCCceEEcccccCCCccccc-ccCCCCCCEEeCcCCcc
Q 045580          299 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV----VFPNSTNLCWLYLNNNHFSGKIQDG-LSKATSLLELDLSNNML  373 (764)
Q Consensus       299 ~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l  373 (764)
                      +|.+.+..|.. +.++++|++|++++|.+++..    .+..+++|++|++++|.+++..|.. +.++++|++|++++|.+
T Consensus        88 ~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           88 YNQFLQLETGA-FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TCTTCEECTTT-TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCccCccChhh-ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            99998555655 478999999999999998733    3888999999999999999887776 88999999999999999


Q ss_pred             CCCccccccCC--CCCCEEECcCCCCCCCCCCcc---------cCCCccEEeccCCccccccchhhcCC---CCCCEEEc
Q 045580          374 YGQIPHWFGNL--SGLQFLDISENQLSGSVPSSF---------NLSSLRRLYMHMNAFNGSIPGALRRS---SSLTVLDL  439 (764)
Q Consensus       374 ~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~---------~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~L  439 (764)
                      .+..+..+..+  .+|+.|++++|.+.+..+..+         .+++|+.|++++|.+.+..|..+...   ++|+.|++
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            98888888776  789999999999987655432         45789999999999998888776543   89999999


Q ss_pred             cCCcCCCcc----------hhhhhc--CCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhc
Q 045580          440 RDNQFSGSI----------PIWINE--FSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWT  507 (764)
Q Consensus       440 ~~n~l~~~~----------p~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~  507 (764)
                      ++|.+.+..          +..+..  .++|++|++++|++++..|..+..+++|++|++++|++++..|..+.+     
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----  321 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-----  321 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-----
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-----
Confidence            998655421          122222  368999999999999988999999999999999999998776766544     


Q ss_pred             ccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCC
Q 045580          508 LGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIP  587 (764)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip  587 (764)
                                                                                   +++|+.|+|++|++++..|
T Consensus       322 -------------------------------------------------------------l~~L~~L~Ls~N~l~~~~~  340 (455)
T 3v47_A          322 -------------------------------------------------------------LTHLLKLNLSQNFLGSIDS  340 (455)
T ss_dssp             -------------------------------------------------------------CTTCCEEECCSSCCCEECG
T ss_pred             -------------------------------------------------------------cccCCEEECCCCccCCcCh
Confidence                                                                         3479999999999998889


Q ss_pred             ccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCC
Q 045580          588 SEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQF  664 (764)
Q Consensus       588 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~  664 (764)
                      ..++.+++|+.|+|++|++++..|..++++++|++|+|++|++++..+..+..+++|++|++++|+++|.||....+
T Consensus       341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence            99999999999999999999888999999999999999999999877778899999999999999999999975433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.7e-38  Score=348.86  Aligned_cols=378  Identities=21%  Similarity=0.212  Sum_probs=239.1

Q ss_pred             EEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCC--CCCCCCCCccEEEccCC
Q 045580          174 ALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF--QLPSSKHDLLRIDISHN  251 (764)
Q Consensus       174 ~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~L~~L~ls~n  251 (764)
                      .++.+++.++.+|. +  .++|++|++++|++++..|.. +.++++|++|++++|.+.+..  .....+++|++|++++|
T Consensus        14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             EEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             ccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            44555555555554 1  245666666666665333332 235555555555555543221  11223444455555555


Q ss_pred             CCCCCCChhHhhcCCCCcEEEcccCCCCccCCcc--ccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccc
Q 045580          252 KFSGQLPGNMGKILPELLSLNLSENGFEVRIPSS--MSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG  329 (764)
Q Consensus       252 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~  329 (764)
                      ++.+..|..+.. +++|++|++++|.+++..+..  +..+++|++|++++|.+.+..|..++..+++|++|++++|.+.+
T Consensus        90 ~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           90 QFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             TTCEECTTTTTT-CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             ccCccChhhccC-cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            444333433332 555555555555555433322  55555555555555555544444444455555555555555544


Q ss_pred             ee--ecCCC--CCCceEEcccccCCCccccc--------ccCCCCCCEEeCcCCccCCCccccccCC---CCCCEEECcC
Q 045580          330 EV--VFPNS--TNLCWLYLNNNHFSGKIQDG--------LSKATSLLELDLSNNMLYGQIPHWFGNL---SGLQFLDISE  394 (764)
Q Consensus       330 ~~--~~~~~--~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~  394 (764)
                      ..  .+..+  .+|+.|++++|.+.+..+..        +..+++|++|++++|.+++..|..+...   ++|+.|++++
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence            32  12221  45555666665555433322        2244566666666666655555544332   5566666666


Q ss_pred             CCCCCCCCCcccCCCccEEeccCCccccccchhhc--CCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccC
Q 045580          395 NQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALR--RSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNI  472 (764)
Q Consensus       395 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  472 (764)
                      |...+.....             +.+.+..+..+.  ..++|+.|++++|++++..|..++.+++|++|++++|++++..
T Consensus       249 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  315 (455)
T 3v47_A          249 SYNMGSSFGH-------------TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID  315 (455)
T ss_dssp             CTTTSCCTTC-------------CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             ccccccccch-------------hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence            6544322111             111111122222  2468999999999999888999999999999999999999888


Q ss_pred             CccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccc
Q 045580          473 PNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRG  552 (764)
Q Consensus       473 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  552 (764)
                      |..+..+++|++|++++|.+++..|..+..                                                  
T Consensus       316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------------------------------  345 (455)
T 3v47_A          316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFEN--------------------------------------------------  345 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECGGGGTT--------------------------------------------------
T ss_pred             hhHhcCcccCCEEECCCCccCCcChhHhcC--------------------------------------------------
Confidence            889999999999999999998766655543                                                  


Q ss_pred             eEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcc
Q 045580          553 IEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG  632 (764)
Q Consensus       553 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~  632 (764)
                                      +++|+.|+|++|++++..|..++.+++|+.|+|++|++++..+..++.+++|+.|++++|++++
T Consensus       346 ----------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          346 ----------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             ----------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ----------------cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence                            3479999999999998889999999999999999999998777788999999999999999999


Q ss_pred             cCc
Q 045580          633 QIP  635 (764)
Q Consensus       633 ~ip  635 (764)
                      .+|
T Consensus       410 ~~~  412 (455)
T 3v47_A          410 SCP  412 (455)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            887

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.9e-38  Score=345.62  Aligned_cols=378  Identities=22%  Similarity=0.260  Sum_probs=264.3

Q ss_pred             CCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCC-------------CCEEEccCCcCccCCC
Q 045580          169 EYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTK-------------LDTLYLLNNSLSGNFQ  235 (764)
Q Consensus       169 ~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~-------------L~~L~L~~n~l~~~~~  235 (764)
                      .++|++|++++|.++.+|..++++++|++|++++|++.|.+|..+. ++++             +++|++++|.+++.+.
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~   88 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSSLPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence            3569999999999999999999999999999999999888887654 4544             5999999999887543


Q ss_pred             CCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCC
Q 045580          236 LPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF  315 (764)
Q Consensus       236 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~  315 (764)
                         ..++|++|++++|.+++ +|..    +++|++|++++|.+++ +|..   .++|++|++++|.+. .+|.  +..++
T Consensus        89 ---~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~l~  153 (454)
T 1jl5_A           89 ---LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQNSS  153 (454)
T ss_dssp             ---CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTTCT
T ss_pred             ---CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCCCC
Confidence               34789999999999985 7753    5789999999998885 3322   268999999999998 4883  57899


Q ss_pred             CCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCC
Q 045580          316 SLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISEN  395 (764)
Q Consensus       316 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  395 (764)
                      +|++|++++|++++....  .++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|..   .++|++|++++|
T Consensus       154 ~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n  225 (454)
T 1jl5_A          154 FLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNN  225 (454)
T ss_dssp             TCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSS
T ss_pred             CCCEEECCCCcCcccCCC--cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCC
Confidence            999999999998875432  3589999999999986 45 58899999999999999885 4443   258999999999


Q ss_pred             CCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCcc
Q 045580          396 QLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQ  475 (764)
Q Consensus       396 ~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  475 (764)
                      .++ .+|....+++|+.|++++|++++ +|.   .+++|+.|++++|++++ +|..   .++|++|++++|++++ +|..
T Consensus       226 ~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~  295 (454)
T 1jl5_A          226 ILE-ELPELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL  295 (454)
T ss_dssp             CCS-SCCCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC
T ss_pred             cCC-cccccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc
Confidence            988 56653388999999999999885 443   24789999999999885 5543   3789999999999886 2221


Q ss_pred             ccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEE
Q 045580          476 LCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEF  555 (764)
Q Consensus       476 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  555 (764)
                         .++|+.|++++|++++ ++.                                                         
T Consensus       296 ---~~~L~~L~l~~N~l~~-i~~---------------------------------------------------------  314 (454)
T 1jl5_A          296 ---PPNLYYLNASSNEIRS-LCD---------------------------------------------------------  314 (454)
T ss_dssp             ---CTTCCEEECCSSCCSE-ECC---------------------------------------------------------
T ss_pred             ---CCcCCEEECcCCcCCc-ccC---------------------------------------------------------
Confidence               2688999999998864 110                                                         


Q ss_pred             eeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcc--c
Q 045580          556 MTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG--Q  633 (764)
Q Consensus       556 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~--~  633 (764)
                                  ..++|+.|++++|++++ +|..   +++|+.|++++|+++ .+|.   .+++|++|++++|++++  .
T Consensus       315 ------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~  374 (454)
T 1jl5_A          315 ------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPD  374 (454)
T ss_dssp             ------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCC
T ss_pred             ------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCC
Confidence                        02368899999999986 6664   578999999999998 5776   47899999999999998  7


Q ss_pred             CcccccCC-------------CCCCeEeccCCcccc--CCCCC
Q 045580          634 IPPQLTEL-------------NFLSNFNVSYNHLSG--PTPNA  661 (764)
Q Consensus       634 ip~~l~~l-------------~~L~~L~ls~N~l~g--~~p~~  661 (764)
                      +|.++..+             ++|++||+++|+++|  .+|..
T Consensus       375 ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             CCTTCCEEECCC-------------------------------
T ss_pred             ChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence            88888887             889999999999998  77754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.5e-37  Score=340.28  Aligned_cols=346  Identities=19%  Similarity=0.208  Sum_probs=256.3

Q ss_pred             cEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEee
Q 045580          244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS  323 (764)
Q Consensus       244 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~  323 (764)
                      +.++.+++.++ .+|..+   .+++++|++++|.+++..+..|..+++|++|++++|.+.+..|.. +.++++|++|++ 
T Consensus        14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L-   87 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGL-   87 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEEC-
T ss_pred             CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEEC-
Confidence            35666666666 667654   357788888888887777777888888888888888777433433 344554444444 


Q ss_pred             cccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCC
Q 045580          324 DNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPS  403 (764)
Q Consensus       324 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  403 (764)
                                           ++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+.
T Consensus        88 ---------------------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  146 (477)
T 2id5_A           88 ---------------------RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR  146 (477)
T ss_dssp             ---------------------CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred             ---------------------CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh
Confidence                                 44444444444566666677777777766666666666777777777777777666665


Q ss_pred             cc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCC
Q 045580          404 SF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLL  482 (764)
Q Consensus       404 ~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  482 (764)
                      .+ .+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|
T Consensus       147 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  226 (477)
T 2id5_A          147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL  226 (477)
T ss_dssp             SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred             hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence            55 66777777777777776666677888888888888888887767778888888888888888777777766666788


Q ss_pred             CEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccc
Q 045580          483 NILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYE  562 (764)
Q Consensus       483 ~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  562 (764)
                      +.|++++|++++..+..+..                                                            
T Consensus       227 ~~L~l~~n~l~~~~~~~~~~------------------------------------------------------------  246 (477)
T 2id5_A          227 TSLSITHCNLTAVPYLAVRH------------------------------------------------------------  246 (477)
T ss_dssp             SEEEEESSCCCSCCHHHHTT------------------------------------------------------------
T ss_pred             cEEECcCCcccccCHHHhcC------------------------------------------------------------
Confidence            99999988887433233332                                                            


Q ss_pred             cccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCC
Q 045580          563 SYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELN  642 (764)
Q Consensus       563 ~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~  642 (764)
                            +++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+.++++|+.|||++|++++..+..|..++
T Consensus       247 ------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  320 (477)
T 2id5_A          247 ------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG  320 (477)
T ss_dssp             ------CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGG
T ss_pred             ------ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCc
Confidence                  34788899999999888888889999999999999999988899999999999999999999988778888999


Q ss_pred             CCCeEeccCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q 045580          643 FLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPR  682 (764)
Q Consensus       643 ~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~~  682 (764)
                      +|+.|++++|++.|.++..+.+.......+.++...|..|
T Consensus       321 ~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          321 NLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             GCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             ccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence            9999999999999988765544444445567777778654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.2e-36  Score=329.07  Aligned_cols=289  Identities=18%  Similarity=0.123  Sum_probs=171.4

Q ss_pred             CCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEc
Q 045580          265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL  344 (764)
Q Consensus       265 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L  344 (764)
                      +++|++|++++|.+++ +|  ++.+++|++|++++|++.+ ++   +..+++|++|++++|...+...+..+++|++|++
T Consensus       105 l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l  177 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC  177 (457)
T ss_dssp             CTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred             CCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence            4444444444444443 22  4444455555555554442 22   2344455555555553333334445555555555


Q ss_pred             ccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCcccccc
Q 045580          345 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSI  424 (764)
Q Consensus       345 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~  424 (764)
                      ++|.+++. +  +..+++|+.|++++|.+++.   .+..+++|++|++++|++++ +| ...+++|+.|++++|++++..
T Consensus       178 s~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          178 SFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             CSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCC
T ss_pred             CCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcC
Confidence            55555542 2  45556666666666666543   25556666666666666665 23 225566666666666666532


Q ss_pred             chhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcch
Q 045580          425 PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVT  504 (764)
Q Consensus       425 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  504 (764)
                         +..+++|+.|++++|              +|+.|++++|++.+.+|  +..+++|+.|++++|...+.+|.....+.
T Consensus       250 ---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~  310 (457)
T 3bz5_A          250 ---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGIT  310 (457)
T ss_dssp             ---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCS
T ss_pred             ---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcce
Confidence               234556666666554              24455666666665555  34566677777777766665553222111


Q ss_pred             hhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccc
Q 045580          505 LWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTG  584 (764)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~  584 (764)
                      ...                                                          -..++.|+.|++++|++++
T Consensus       311 ~L~----------------------------------------------------------l~~~~~L~~L~L~~N~l~~  332 (457)
T 3bz5_A          311 ELD----------------------------------------------------------LSQNPKLVYLYLNNTELTE  332 (457)
T ss_dssp             CCC----------------------------------------------------------CTTCTTCCEEECTTCCCSC
T ss_pred             Eec----------------------------------------------------------hhhcccCCEEECCCCcccc
Confidence            000                                                          0113478889999999997


Q ss_pred             cCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580          585 DIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA  661 (764)
Q Consensus       585 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~  661 (764)
                       ++  ++++++|+.|++++|++++        ++.|+.|++++|.++|.     ..+..|..+++++|+++|.+|..
T Consensus       333 -l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          333 -LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             -CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             -cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence             43  8899999999999999985        24667788999999886     24456788899999999999975

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.9e-35  Score=324.87  Aligned_cols=344  Identities=26%  Similarity=0.339  Sum_probs=251.2

Q ss_pred             CCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECC
Q 045580          219 KLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLS  298 (764)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls  298 (764)
                      +++.|++.++.+.... ....+++|++|++++|.+. .++. + ..+++|++|++++|.+.+..+  +..+++|++|+++
T Consensus        47 ~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~  120 (466)
T 1o6v_A           47 QVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF  120 (466)
T ss_dssp             TCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             cccEEecCCCCCccCc-chhhhcCCCEEECCCCccC-Cchh-h-hccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence            3444444444443321 1123444555555555554 3333 3 336777777777777764433  6777777777777


Q ss_pred             CCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCcc
Q 045580          299 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIP  378 (764)
Q Consensus       299 ~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  378 (764)
                      +|.+. .++.  +..+++|++|++++|.+.+...+..+++|+.|+++ |.+.+..  .+.++++|++|++++|.+.+.  
T Consensus       121 ~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--  192 (466)
T 1o6v_A          121 NNQIT-DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--  192 (466)
T ss_dssp             SSCCC-CCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--
T ss_pred             CCCCC-CChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--
Confidence            77776 3443  46677777777777777766667777777777775 3444332  277788888888888887643  


Q ss_pred             ccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCc
Q 045580          379 HWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYL  458 (764)
Q Consensus       379 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L  458 (764)
                      ..+..+++|++|++++|.+.+..+ ...+++|+.|++++|.+.+.  ..+..+++|+.|++++|++++..+  +..+++|
T Consensus       193 ~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L  267 (466)
T 1o6v_A          193 SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKL  267 (466)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCC
Confidence            347778888888888888876655 23678888888888888754  357788899999999999986655  7888999


Q ss_pred             cEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhc
Q 045580          459 GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLEL  538 (764)
Q Consensus       459 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (764)
                      ++|++++|++++..+  +..+++|+.|++++|++++..|  +.                                     
T Consensus       268 ~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~-------------------------------------  306 (466)
T 1o6v_A          268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS-------------------------------------  306 (466)
T ss_dssp             SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG-------------------------------------
T ss_pred             CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc-------------------------------------
Confidence            999999999986444  7888999999999998875433  21                                     


Q ss_pred             cccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCC
Q 045580          539 SEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLK  618 (764)
Q Consensus       539 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  618 (764)
                                                   .+++|+.|++++|++++..|  ++.+++|+.|++++|++++.  ..+++++
T Consensus       307 -----------------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~  353 (466)
T 1o6v_A          307 -----------------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT  353 (466)
T ss_dssp             -----------------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred             -----------------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCC
Confidence                                         14578999999999997665  78999999999999999865  4788999


Q ss_pred             CCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccC
Q 045580          619 MIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGP  657 (764)
Q Consensus       619 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  657 (764)
                      +|+.|++++|++++.+|  +..+++|+.|++++|++++.
T Consensus       354 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            99999999999998777  88999999999999999983

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.7e-35  Score=324.95  Aligned_cols=368  Identities=19%  Similarity=0.190  Sum_probs=253.0

Q ss_pred             cccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccc
Q 045580           83 NLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETE  162 (764)
Q Consensus        83 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  162 (764)
                      ...+..+..++++++|++|++++|.+++. | .++.+++|++|++++|++++ ++   ++.+++                
T Consensus        29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~----------------   86 (457)
T 3bz5_A           29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTN----------------   86 (457)
T ss_dssp             TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTT----------------
T ss_pred             CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCC----------------
Confidence            34445556778888899999998888864 4 68888888888888888774 22   333333                


Q ss_pred             cCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCC
Q 045580          163 EFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD  242 (764)
Q Consensus       163 ~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  242 (764)
                               |++|++++|.++.+|  +..+++|++|++++|++++ +|   +..+++|++|++++|.+++.  ....   
T Consensus        87 ---------L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l--~l~~---  146 (457)
T 3bz5_A           87 ---------LTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI--DVSH---  146 (457)
T ss_dssp             ---------CSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC--CCTT---
T ss_pred             ---------CCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee--cccc---
Confidence                     555555556665554  6677888888888888874 44   45777777777777777653  1233   


Q ss_pred             ccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEe
Q 045580          243 LLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL  322 (764)
Q Consensus       243 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l  322 (764)
                                            +++|++|++++|...+.+  .+..+++|++|++++|++. .+|   +..+++|+.|++
T Consensus       147 ----------------------l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~l~---l~~l~~L~~L~l  198 (457)
T 3bz5_A          147 ----------------------NTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELD---VSQNKLLNRLNC  198 (457)
T ss_dssp             ----------------------CTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC-CCC---CTTCTTCCEEEC
T ss_pred             ----------------------CCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc-eec---cccCCCCCEEEC
Confidence                                  444555555555333222  2445555555555555555 244   245555566666


Q ss_pred             ecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCC
Q 045580          323 SDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVP  402 (764)
Q Consensus       323 ~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  402 (764)
                      ++|.+++. .+..+++|++|++++|++++ +|  +..+++|+.|++++|++++..   +..+++|+.|++++|+      
T Consensus       199 ~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~------  265 (457)
T 3bz5_A          199 DTNNITKL-DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD------  265 (457)
T ss_dssp             CSSCCSCC-CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC------
T ss_pred             cCCcCCee-ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC------
Confidence            65555544 35566777777777777776 34  677788888888888887643   4567778888877653      


Q ss_pred             CcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCC
Q 045580          403 SSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLL  482 (764)
Q Consensus       403 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  482 (764)
                             |+.|++++|.+.+.+|  +..+++|+.|++++|...+.+|.   ..++|+.|++++|             ++|
T Consensus       266 -------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L  320 (457)
T 3bz5_A          266 -------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKL  320 (457)
T ss_dssp             -------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTC
T ss_pred             -------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccC
Confidence                   5667788888777776  46788899999999988777774   3355665555544             688


Q ss_pred             CEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccc
Q 045580          483 NILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYE  562 (764)
Q Consensus       483 ~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  562 (764)
                      +.|++++|++++. +  +++                                                            
T Consensus       321 ~~L~L~~N~l~~l-~--l~~------------------------------------------------------------  337 (457)
T 3bz5_A          321 VYLYLNNTELTEL-D--VSH------------------------------------------------------------  337 (457)
T ss_dssp             CEEECTTCCCSCC-C--CTT------------------------------------------------------------
T ss_pred             CEEECCCCccccc-c--ccc------------------------------------------------------------
Confidence            9999999998862 2  222                                                            


Q ss_pred             cccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccC
Q 045580          563 SYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTE  640 (764)
Q Consensus       563 ~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~  640 (764)
                            ++.|+.||+++|++++        ++.|..|++++|+++|.     +.+..|+.+++++|+++|.+|..+..
T Consensus       338 ------l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          338 ------NTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             ------CTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             ------CCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence                  4478899999999985        35677888999999876     35667888999999999999976544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.8e-35  Score=322.96  Aligned_cols=343  Identities=29%  Similarity=0.361  Sum_probs=239.8

Q ss_pred             CccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccC
Q 045580          171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISH  250 (764)
Q Consensus       171 ~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~  250 (764)
                      +++.|++.++.+..+|. +..+++|++|++++|.+++ ++.  +.++++|++|++++|.+.+.                 
T Consensus        47 ~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~-----------------  105 (466)
T 1o6v_A           47 QVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADI-----------------  105 (466)
T ss_dssp             TCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCC-----------------
T ss_pred             cccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccC-----------------
Confidence            46666666666666653 5566677777777777663 333  34666666666666665533                 


Q ss_pred             CCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccce
Q 045580          251 NKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE  330 (764)
Q Consensus       251 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~  330 (764)
                             +. + ..+++|++|++++|.+++..  .+..+++|++|++++|.+. .++.  +..+++|+.|+++ +.+.+.
T Consensus       106 -------~~-~-~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~  170 (466)
T 1o6v_A          106 -------TP-L-ANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDL  170 (466)
T ss_dssp             -------GG-G-TTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCC
T ss_pred             -------hh-h-cCCCCCCEEECCCCCCCCCh--HHcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCc
Confidence                   22 2 22555666666666555332  2556666666666666655 3332  3556666666664 344444


Q ss_pred             eecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCc
Q 045580          331 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSL  410 (764)
Q Consensus       331 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L  410 (764)
                      ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..|  ++.+++|++|++++|.+++. +....+++|
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L  245 (466)
T 1o6v_A          171 KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNL  245 (466)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTC
T ss_pred             hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCC
Confidence            4566667777777777776643  236777788888888887776544  66677888888888877753 332367888


Q ss_pred             cEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCC
Q 045580          411 RRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYN  490 (764)
Q Consensus       411 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  490 (764)
                      +.|++++|.+.+..+  +..+++|+.|++++|++++..+  +..+++|++|++++|++++..+  +..+++|+.|++++|
T Consensus       246 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n  319 (466)
T 1o6v_A          246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN  319 (466)
T ss_dssp             SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSS
T ss_pred             CEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCC
Confidence            888888888876654  7788889999999998886544  7788899999999999886544  778899999999999


Q ss_pred             cCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccc
Q 045580          491 KFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILN  570 (764)
Q Consensus       491 ~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  570 (764)
                      ++++..|  +..                                                                  ++
T Consensus       320 ~l~~~~~--~~~------------------------------------------------------------------l~  331 (466)
T 1o6v_A          320 NISDISP--VSS------------------------------------------------------------------LT  331 (466)
T ss_dssp             CCSCCGG--GGG------------------------------------------------------------------CT
T ss_pred             cCCCchh--hcc------------------------------------------------------------------Cc
Confidence            8876544  211                                                                  45


Q ss_pred             cccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcc
Q 045580          571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG  632 (764)
Q Consensus       571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~  632 (764)
                      +|+.|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       332 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            788999999999864  468899999999999999998877  8899999999999999986

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.2e-35  Score=304.97  Aligned_cols=258  Identities=34%  Similarity=0.575  Sum_probs=219.8

Q ss_pred             CCCCEEeCcCCccCC--CccccccCCCCCCEEECcC-CCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCE
Q 045580          361 TSLLELDLSNNMLYG--QIPHWFGNLSGLQFLDISE-NQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTV  436 (764)
Q Consensus       361 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  436 (764)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..+ .+++|++|++++|.+++.+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            356666666666666  5666667777777777773 66666666666 6777777777777777777888888889999


Q ss_pred             EEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCC-CCCEEeCCCCcCcCCcChhhhcchhhcccccCCcc
Q 045580          437 LDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLS-LLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSF  515 (764)
Q Consensus       437 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~  515 (764)
                      |++++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..             
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-------------  196 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-------------  196 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-------------
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-------------
Confidence            99999998888888899999999999999999888898898887 9999999999998888776643             


Q ss_pred             ccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccc
Q 045580          516 VLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSE  595 (764)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~  595 (764)
                                                                           + .|+.|++++|++++.+|..++.+++
T Consensus       197 -----------------------------------------------------l-~L~~L~Ls~N~l~~~~~~~~~~l~~  222 (313)
T 1ogq_A          197 -----------------------------------------------------L-NLAFVDLSRNMLEGDASVLFGSDKN  222 (313)
T ss_dssp             -----------------------------------------------------C-CCSEEECCSSEEEECCGGGCCTTSC
T ss_pred             -----------------------------------------------------C-cccEEECcCCcccCcCCHHHhcCCC
Confidence                                                                 2 2888999999999999999999999


Q ss_pred             cceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCC
Q 045580          596 IRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGN  675 (764)
Q Consensus       596 L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn  675 (764)
                      |+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..++...+.||
T Consensus       223 L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          223 TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN  301 (313)
T ss_dssp             CSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSS
T ss_pred             CCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCC
Confidence            99999999999977776 88999999999999999999999999999999999999999999999988999999999999


Q ss_pred             CCCCCCCCCCCC
Q 045580          676 SGLCGPRINKSC  687 (764)
Q Consensus       676 ~~lc~~~~~~~c  687 (764)
                      +++||.|+. .|
T Consensus       302 ~~lc~~p~~-~C  312 (313)
T 1ogq_A          302 KCLCGSPLP-AC  312 (313)
T ss_dssp             SEEESTTSS-CC
T ss_pred             CCccCCCCC-CC
Confidence            999998765 46

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.1e-33  Score=305.92  Aligned_cols=334  Identities=22%  Similarity=0.228  Sum_probs=220.0

Q ss_pred             CCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCE
Q 045580          240 KHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSF  319 (764)
Q Consensus       240 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~  319 (764)
                      +.+++.|++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++
T Consensus        44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence            456677777777766 677776666888888888888888777778888888888888888887 444444456666666


Q ss_pred             EEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCC
Q 045580          320 LSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSG  399 (764)
Q Consensus       320 L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  399 (764)
                      |++++|.++...                      +..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus       122 L~L~~n~l~~l~----------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          122 LVLERNDLSSLP----------------------RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             EECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             EECCCCccCcCC----------------------HHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            666666555333                      2333444455555555555544444444555555555555555443


Q ss_pred             CCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCC
Q 045580          400 SVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHL  479 (764)
Q Consensus       400 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  479 (764)
                      ..  ...+++|+.|++++|.+.+     +...++|+.|++++|+++.. |.  ...++|+.|++++|++++.  ..+..+
T Consensus       180 ~~--~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l  247 (390)
T 3o6n_A          180 VD--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNY  247 (390)
T ss_dssp             CC--GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGC
T ss_pred             cc--cccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCC
Confidence            21  1134555555555555442     12334666666666666532 32  2235677777777777643  456677


Q ss_pred             CCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecc
Q 045580          480 SLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKK  559 (764)
Q Consensus       480 ~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  559 (764)
                      ++|++|++++|.+++..|..+..                                                         
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~---------------------------------------------------------  270 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVK---------------------------------------------------------  270 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTT---------------------------------------------------------
T ss_pred             CCccEEECCCCcCCCcChhHccc---------------------------------------------------------
Confidence            77777777777777655554433                                                         


Q ss_pred             ccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCccccc
Q 045580          560 RYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLT  639 (764)
Q Consensus       560 ~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~  639 (764)
                               +++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..++.+++|+.|++++|+++.. |  +.
T Consensus       271 ---------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~  336 (390)
T 3o6n_A          271 ---------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LS  336 (390)
T ss_dssp             ---------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CC
T ss_pred             ---------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--ch
Confidence                     3367778888887774 5666778889999999999998 6777788899999999999999854 3  67


Q ss_pred             CCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q 045580          640 ELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGP  681 (764)
Q Consensus       640 ~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~  681 (764)
                      .+++|+.|++++|++.|.+... .+..+....+.+++..|..
T Consensus       337 ~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          337 THHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             TTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCSCCCT
T ss_pred             hhccCCEEEcCCCCccchhHHH-HHHHHHhhcccccCceecc
Confidence            8889999999999999865432 2444555556677766753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=312.22  Aligned_cols=328  Identities=21%  Similarity=0.216  Sum_probs=193.9

Q ss_pred             CCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEE
Q 045580          241 HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFL  320 (764)
Q Consensus       241 ~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L  320 (764)
                      ++++.|++++|++++..+..+ ..+++|++|+|++|.+++..|..|.++++|++|++++|.+. .+|...+.++++|++|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred             CCCcEEECCCCccceECHhHc-cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence            356666666666663334444 34888999999999988888888999999999999999887 6776655667777777


Q ss_pred             Eeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCC
Q 045580          321 SLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLS  398 (764)
Q Consensus       321 ~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  398 (764)
                      ++++|.+.+..  .+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            76666665433  3445555555555555555555555555555555555555555444444555555555555555554


Q ss_pred             CCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccC
Q 045580          399 GSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCH  478 (764)
Q Consensus       399 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  478 (764)
                      +.                       .+..|..+++|+.|++++|...+.+|.......+|+.|++++|++++..+..+..
T Consensus       190 ~~-----------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  246 (477)
T 2id5_A          190 AI-----------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH  246 (477)
T ss_dssp             EE-----------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred             Ee-----------------------ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence            43                       3344444555555555555544444444444445555555555555333344555


Q ss_pred             CCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeec
Q 045580          479 LSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTK  558 (764)
Q Consensus       479 l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  558 (764)
                      +++|+.|++++|++++..+..+..                                                        
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------------------------------------  270 (477)
T 2id5_A          247 LVYLRFLNLSYNPISTIEGSMLHE--------------------------------------------------------  270 (477)
T ss_dssp             CTTCCEEECCSSCCCEECTTSCTT--------------------------------------------------------
T ss_pred             ccccCeeECCCCcCCccChhhccc--------------------------------------------------------
Confidence            556666666666555433322221                                                        


Q ss_pred             cccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccc
Q 045580          559 KRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQL  638 (764)
Q Consensus       559 ~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l  638 (764)
                                ++.|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|++.+..+. .
T Consensus       271 ----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~-~  339 (477)
T 2id5_A          271 ----------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL-L  339 (477)
T ss_dssp             ----------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG-H
T ss_pred             ----------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch-H
Confidence                      23566666666666666666666677777777777777665555666677777777777776643221 1


Q ss_pred             cCCCCCCeEeccCCccccCCCC
Q 045580          639 TELNFLSNFNVSYNHLSGPTPN  660 (764)
Q Consensus       639 ~~l~~L~~L~ls~N~l~g~~p~  660 (764)
                      .-......+++.++...|..|.
T Consensus       340 ~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          340 WVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             HHHTTTTSSCCTTCCCBEEESG
T ss_pred             hHHhhhhccccCccCceeCCch
Confidence            1112233445555655555553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.8e-33  Score=321.14  Aligned_cols=335  Identities=22%  Similarity=0.226  Sum_probs=234.7

Q ss_pred             CCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCE
Q 045580          240 KHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSF  319 (764)
Q Consensus       240 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~  319 (764)
                      +.+++.+++++|.+. .+|..++..+++|++|++++|.+++..|..|+.+++|++|++++|.+.+ +|...+..+++|++
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCE
Confidence            455666777777666 6777766668888888888888887777788888888888888888874 44444455666655


Q ss_pred             EEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCC
Q 045580          320 LSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSG  399 (764)
Q Consensus       320 L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  399 (764)
                      |++++|.++                      +..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++
T Consensus       128 L~L~~n~l~----------------------~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          128 LVLERNDLS----------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             EECCSSCCC----------------------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             EEeeCCCCC----------------------CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            555555554                      3333344555555566666555555555555556666666666665554


Q ss_pred             CCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCC
Q 045580          400 SVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHL  479 (764)
Q Consensus       400 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  479 (764)
                      ...  ..+++|+.|++++|.+.+     +...++|+.|++++|.++.. +..+  .++|+.|++++|.+++  +..+..+
T Consensus       186 ~~~--~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l  253 (597)
T 3oja_B          186 VDL--SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNY  253 (597)
T ss_dssp             CCG--GGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGC
T ss_pred             cCh--hhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccC
Confidence            321  134556666666665553     23345677777777777633 2221  2577788888887775  3567777


Q ss_pred             CCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecc
Q 045580          480 SLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKK  559 (764)
Q Consensus       480 ~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  559 (764)
                      ++|+.|++++|.+++..|..+..                                                         
T Consensus       254 ~~L~~L~Ls~N~l~~~~~~~~~~---------------------------------------------------------  276 (597)
T 3oja_B          254 PGLVEVDLSYNELEKIMYHPFVK---------------------------------------------------------  276 (597)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTT---------------------------------------------------------
T ss_pred             CCCCEEECCCCccCCCCHHHhcC---------------------------------------------------------
Confidence            88888888888887766665543                                                         


Q ss_pred             ccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCccccc
Q 045580          560 RYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLT  639 (764)
Q Consensus       560 ~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~  639 (764)
                               +++|+.|+|++|++++ +|..++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++. |  +.
T Consensus       277 ---------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~  342 (597)
T 3oja_B          277 ---------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LS  342 (597)
T ss_dssp             ---------CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CC
T ss_pred             ---------ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hh
Confidence                     3367888888888875 6777788899999999999998 6888889999999999999999865 3  67


Q ss_pred             CCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q 045580          640 ELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPR  682 (764)
Q Consensus       640 ~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~~  682 (764)
                      .++.|+.|++++|+++|.++.. .+..+....+.+++..|+.+
T Consensus       343 ~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          343 THHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             TTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred             hcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCcc
Confidence            7889999999999999876543 35566667788888889853

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.2e-32  Score=291.02  Aligned_cols=304  Identities=24%  Similarity=0.359  Sum_probs=220.5

Q ss_pred             CCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEc
Q 045580          265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL  344 (764)
Q Consensus       265 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L  344 (764)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|.+. .++.  +..+++|++|++++|.+++...+..+++|++|++
T Consensus        43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l  117 (347)
T 4fmz_A           43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL  117 (347)
T ss_dssp             HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCchHHcCCCcCCEEEC
Confidence            5566666666666653 23 3566666666666666665 3443  4566666666666666665556666777777777


Q ss_pred             ccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCcccccc
Q 045580          345 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSI  424 (764)
Q Consensus       345 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~  424 (764)
                      ++|.+++..+  +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ ...+++|+.|++++|.+.+..
T Consensus       118 ~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~  193 (347)
T 4fmz_A          118 NEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS  193 (347)
T ss_dssp             TTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG
T ss_pred             cCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc
Confidence            7777765433  6777788888888775554433 37777888888888887775444 236778888888888877543


Q ss_pred             chhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcch
Q 045580          425 PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVT  504 (764)
Q Consensus       425 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  504 (764)
                      +  +..+++|+.|++++|++++..+  +..+++|++|++++|++++..+  +..+++|++|++++|.+++. + .+.   
T Consensus       194 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~---  262 (347)
T 4fmz_A          194 P--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N-AVK---  262 (347)
T ss_dssp             G--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGT---
T ss_pred             c--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h-hHh---
Confidence            3  7778888888888888886544  7788888888888888885433  77888899999998887642 1 111   


Q ss_pred             hhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccc
Q 045580          505 LWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTG  584 (764)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~  584 (764)
                                                                                     .+++|+.|++++|++++
T Consensus       263 ---------------------------------------------------------------~l~~L~~L~l~~n~l~~  279 (347)
T 4fmz_A          263 ---------------------------------------------------------------DLTKLKMLNVGSNQISD  279 (347)
T ss_dssp             ---------------------------------------------------------------TCTTCCEEECCSSCCCC
T ss_pred             ---------------------------------------------------------------cCCCcCEEEccCCccCC
Confidence                                                                           14578889999998885


Q ss_pred             cCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccc
Q 045580          585 DIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLS  655 (764)
Q Consensus       585 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  655 (764)
                      .  +.+..+++|+.|++++|++++..|..++.+++|+.|++++|++++..|  +..+++|++|++++|+++
T Consensus       280 ~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          280 I--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             C--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            3  458888999999999999998888889999999999999999987666  888999999999999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.1e-31  Score=285.56  Aligned_cols=282  Identities=24%  Similarity=0.342  Sum_probs=213.4

Q ss_pred             CCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEc
Q 045580          265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL  344 (764)
Q Consensus       265 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L  344 (764)
                      +++|++|++++|.+++. +. +..+++|++|++++|.+. .++.  +..+++|++|++++|.+.+...+..+++|+.|++
T Consensus        65 ~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l  139 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRELYLNEDNISDISPLANLTKMYSLNL  139 (347)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEEC
T ss_pred             cCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-CchH--HcCCCcCCEEECcCCcccCchhhccCCceeEEEC
Confidence            66666666666666532 22 666666777777766665 3442  4566677777777776666555667777777777


Q ss_pred             ccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCcccccc
Q 045580          345 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSI  424 (764)
Q Consensus       345 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~  424 (764)
                      ++|.....++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+ ...+++|+.+++++|.+.+..
T Consensus       140 ~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~  215 (347)
T 4fmz_A          140 GANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDIT  215 (347)
T ss_dssp             TTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCc
Confidence            7775554433 37788888888888888875433  7788888888888888875443 337888888999888887655


Q ss_pred             chhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcch
Q 045580          425 PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVT  504 (764)
Q Consensus       425 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  504 (764)
                      +  +..+++|++|++++|++++..+  +..+++|++|++++|++++.  +.+..+++|+.|++++|++++. | .+.   
T Consensus       216 ~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~---  284 (347)
T 4fmz_A          216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLN---  284 (347)
T ss_dssp             G--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGG---
T ss_pred             h--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhc---
Confidence            4  7788999999999999986544  88899999999999998853  4688899999999999988753 2 111   


Q ss_pred             hhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccc
Q 045580          505 LWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTG  584 (764)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~  584 (764)
                                                                                     .+++|+.|++++|++++
T Consensus       285 ---------------------------------------------------------------~l~~L~~L~L~~n~l~~  301 (347)
T 4fmz_A          285 ---------------------------------------------------------------NLSQLNSLFLNNNQLGN  301 (347)
T ss_dssp             ---------------------------------------------------------------GCTTCSEEECCSSCCCG
T ss_pred             ---------------------------------------------------------------CCCCCCEEECcCCcCCC
Confidence                                                                           14579999999999998


Q ss_pred             cCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCc
Q 045580          585 DIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS  631 (764)
Q Consensus       585 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~  631 (764)
                      ..|..++.+++|+.|++++|++++..|  ++.+++|+.||+++|.++
T Consensus       302 ~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            889999999999999999999997766  889999999999999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=9.3e-32  Score=290.85  Aligned_cols=310  Identities=21%  Similarity=0.222  Sum_probs=178.6

Q ss_pred             CCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcE
Q 045580           70 ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQV  149 (764)
Q Consensus        70 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~  149 (764)
                      .++++++|++++|.++...+..|..+++|++|+|++|.+++..+..|+++++|++|++++|++++. +...++++++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCE
Confidence            468899999999998877667788899999999999999887778899999999999999988743 3344555555444


Q ss_pred             EEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHh-hhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCC
Q 045580          150 FKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSF-LLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNN  228 (764)
Q Consensus       150 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n  228 (764)
                      |+                         +++|.++.+|.. +..+++|++|++++|++++ ++...+..+++|++|++++|
T Consensus       122 L~-------------------------L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          122 LV-------------------------LERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             EE-------------------------CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSS
T ss_pred             EE-------------------------CCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCC
Confidence            44                         444445555544 3566677777777777763 33323345566666666555


Q ss_pred             cCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCch
Q 045580          229 SLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPR  308 (764)
Q Consensus       229 ~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~  308 (764)
                      .+++.                        +.   ..+++|+.|++++|.+++     +...++|++|++++|.+. .+|.
T Consensus       176 ~l~~~------------------------~~---~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~-~~~~  222 (390)
T 3o6n_A          176 RLTHV------------------------DL---SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRG  222 (390)
T ss_dssp             CCSBC------------------------CG---GGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCC-EEEC
T ss_pred             cCCcc------------------------cc---ccccccceeecccccccc-----cCCCCcceEEECCCCeee-eccc
Confidence            55432                        11   124556666666665542     223345666666666665 3333


Q ss_pred             hhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCC
Q 045580          309 QFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQ  388 (764)
Q Consensus       309 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  388 (764)
                      .   ..++|+.|++++|.+++...+..+++|++|++++|.+++..|..+..+++|++|++++|++++ +|..+..+++|+
T Consensus       223 ~---~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~  298 (390)
T 3o6n_A          223 P---VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLK  298 (390)
T ss_dssp             C---CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCC
T ss_pred             c---ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCC
Confidence            2   234455555555544443334444445555555555544444455555555555555555542 333334444444


Q ss_pred             EEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcC
Q 045580          389 FLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQL  468 (764)
Q Consensus       389 ~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  468 (764)
                      +|++++|+++                        .+|..+..+++|+.|++++|++++. +  +..+++|+.|++++|++
T Consensus       299 ~L~L~~n~l~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          299 VLDLSHNHLL------------------------HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             EEECCSSCCC------------------------CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCE
T ss_pred             EEECCCCcce------------------------ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCc
Confidence            4444444444                        2333344455555555555555432 2  44455555566655555


Q ss_pred             Cc
Q 045580          469 KG  470 (764)
Q Consensus       469 ~~  470 (764)
                      .+
T Consensus       352 ~~  353 (390)
T 3o6n_A          352 DC  353 (390)
T ss_dssp             EH
T ss_pred             cc
Confidence            53

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=4.4e-33  Score=290.96  Aligned_cols=251  Identities=28%  Similarity=0.460  Sum_probs=229.9

Q ss_pred             CCCceEEcccccCCC--cccccccCCCCCCEEeCcC-CccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccE
Q 045580          337 TNLCWLYLNNNHFSG--KIQDGLSKATSLLELDLSN-NMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRR  412 (764)
Q Consensus       337 ~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~  412 (764)
                      .+++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..|..+++|++|++++|.+++.+|..+ .+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            468888899999988  7888999999999999995 89998999999999999999999999998888877 8999999


Q ss_pred             EeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCC-CccEEEccCCcCCccCCccccCCCCCCEEeCCCCc
Q 045580          413 LYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFS-YLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK  491 (764)
Q Consensus       413 L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  491 (764)
                      |++++|.+.+.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            99999999999999999999999999999999999999999998 999999999999999999999887 9999999999


Q ss_pred             CcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccccccccc
Q 045580          492 FNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNY  571 (764)
Q Consensus       492 l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  571 (764)
                      +++.+|..+..                                                                  +++
T Consensus       209 l~~~~~~~~~~------------------------------------------------------------------l~~  222 (313)
T 1ogq_A          209 LEGDASVLFGS------------------------------------------------------------------DKN  222 (313)
T ss_dssp             EEECCGGGCCT------------------------------------------------------------------TSC
T ss_pred             ccCcCCHHHhc------------------------------------------------------------------CCC
Confidence            98877765543                                                                  347


Q ss_pred             ccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccC
Q 045580          572 MTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSY  651 (764)
Q Consensus       572 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  651 (764)
                      |+.|+|++|++++.+|. +..+++|+.|+|++|++++.+|..++.+++|+.|+|++|+++|.+|.. ..+++|+.+++++
T Consensus       223 L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~  300 (313)
T 1ogq_A          223 TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN  300 (313)
T ss_dssp             CSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCS
T ss_pred             CCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcC
Confidence            99999999999977766 889999999999999999999999999999999999999999999987 8899999999999


Q ss_pred             Cc-ccc
Q 045580          652 NH-LSG  656 (764)
Q Consensus       652 N~-l~g  656 (764)
                      |+ ++|
T Consensus       301 N~~lc~  306 (313)
T 1ogq_A          301 NKCLCG  306 (313)
T ss_dssp             SSEEES
T ss_pred             CCCccC
Confidence            98 565

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=4.1e-31  Score=301.61  Aligned_cols=308  Identities=20%  Similarity=0.205  Sum_probs=261.2

Q ss_pred             CCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEE
Q 045580          289 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL  366 (764)
Q Consensus       289 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  366 (764)
                      +.+++.+++++|.+. .+|..++..+++|++|++++|.+.+..  .+..+++|++|++++|.+++..+..|+++++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            456777777777776 677776677788888888888777655  67788899999999999998888889999999999


Q ss_pred             eCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCC
Q 045580          367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFS  445 (764)
Q Consensus       367 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~  445 (764)
                      ++++|.+++..+..|..+++|++|++++|.+++..|..+ .+++|+.|++++|.+++..   +..+++|+.|++++|.++
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence            999999997766778999999999999999999888877 8999999999999998653   456789999999999987


Q ss_pred             CcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccch
Q 045580          446 GSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRIS  525 (764)
Q Consensus       446 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  525 (764)
                      +     +...++|+.|++++|.+... +..+  .++|+.|++++|.+++.  ..+..                       
T Consensus       206 ~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~--~~l~~-----------------------  252 (597)
T 3oja_B          206 T-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT--AWLLN-----------------------  252 (597)
T ss_dssp             E-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC--GGGGG-----------------------
T ss_pred             c-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC--hhhcc-----------------------
Confidence            4     23457899999999999844 3332  36899999999999862  22221                       


Q ss_pred             hhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccc
Q 045580          526 TEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNF  605 (764)
Q Consensus       526 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~  605 (764)
                                                                 +++|+.|+|++|.+++.+|..++.+++|+.|+|++|+
T Consensus       253 -------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  289 (597)
T 3oja_B          253 -------------------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR  289 (597)
T ss_dssp             -------------------------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred             -------------------------------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence                                                       4589999999999999999999999999999999999


Q ss_pred             cccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCCCCCC
Q 045580          606 LSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCG  680 (764)
Q Consensus       606 l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~  680 (764)
                      +++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|++++|++++..  ...+..+....+.||+..|.
T Consensus       290 l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          290 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             CCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence            995 6878888999999999999999 68888999999999999999998753  34467778888999998774

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=5.9e-34  Score=315.74  Aligned_cols=359  Identities=21%  Similarity=0.193  Sum_probs=185.0

Q ss_pred             CccEEEcCCCCCCCcc--HhhhCCCCccEEEccCCCCCCc----cchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCcc
Q 045580          171 QLKALNLRNCSLHALP--SFLLHQLDLRFIDLSHNKLQGT----FPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL  244 (764)
Q Consensus       171 ~L~~L~L~~n~l~~lp--~~l~~~~~L~~L~Ls~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~  244 (764)
                      +|++|++++|+++..+  ..+..+++|++|++++|++++.    ++.. +..+++|++|++++|.+              
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l--------------   68 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNEL--------------   68 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCC--------------
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcC--------------
Confidence            3566666666664432  2245556666666666665532    1222 22444555555444444              


Q ss_pred             EEEccCCCCCCCCChhHhhcCC----CCcEEEcccCCCCc----cCCccccCCCCCCEEECCCCcccccCchhhhh----
Q 045580          245 RIDISHNKFSGQLPGNMGKILP----ELLSLNLSENGFEV----RIPSSMSEMKRLESLDLSSNNFSGELPRQFLS----  312 (764)
Q Consensus       245 ~L~ls~n~l~~~~~~~~~~~l~----~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~----  312 (764)
                               .+..+..+...++    +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+..    
T Consensus        69 ---------~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  139 (461)
T 1z7x_W           69 ---------GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD  139 (461)
T ss_dssp             ---------HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred             ---------ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhc
Confidence                     3233444444454    58888888887763    34667777888888888888776433333221    


Q ss_pred             CCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCcccccc-----CCCCC
Q 045580          313 GCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFG-----NLSGL  387 (764)
Q Consensus       313 ~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L  387 (764)
                      ..++|++|++++|.+++...                  ..++..+..+++|++|++++|.+.+..+..+.     ..++|
T Consensus       140 ~~~~L~~L~L~~n~l~~~~~------------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L  201 (461)
T 1z7x_W          140 PQCRLEKLQLEYCSLSAASC------------------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL  201 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGH------------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCC
T ss_pred             CCCcceEEECCCCCCCHHHH------------------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCc
Confidence            23345555555554443210                  01123334445555555555554432222221     23455


Q ss_pred             CEEECcCCCCCCC----CCCcc-cCCCccEEeccCCcccccc-----chhhcCCCCCCEEEccCCcCCCc----chhhhh
Q 045580          388 QFLDISENQLSGS----VPSSF-NLSSLRRLYMHMNAFNGSI-----PGALRRSSSLTVLDLRDNQFSGS----IPIWIN  453 (764)
Q Consensus       388 ~~L~L~~n~l~~~----~~~~~-~~~~L~~L~l~~n~l~~~~-----~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~  453 (764)
                      ++|++++|.+++.    ++..+ .+++|++|++++|.+.+..     +..+..+++|+.|++++|++++.    ++..+.
T Consensus       202 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  281 (461)
T 1z7x_W          202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR  281 (461)
T ss_dssp             CEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             eEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence            5555555555432    12222 3455555555555544321     12222456666666666666643    455555


Q ss_pred             cCCCccEEEccCCcCCccCCcccc-----CCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhH
Q 045580          454 EFSYLGILLLRGNQLKGNIPNQLC-----HLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEF  528 (764)
Q Consensus       454 ~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  528 (764)
                      .+++|++|++++|.+++..+..+.     ..++|+.|++++|.+++.....+...-                        
T Consensus       282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l------------------------  337 (461)
T 1z7x_W          282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL------------------------  337 (461)
T ss_dssp             HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH------------------------
T ss_pred             hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHH------------------------
Confidence            566666666666666543332222     124666666666666543211111000                        


Q ss_pred             HHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccC-----ccccceecccc
Q 045580          529 EAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGS-----LSEIRALNLSH  603 (764)
Q Consensus       529 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~-----l~~L~~L~Ls~  603 (764)
                                                            ..++.|+.||+++|++++..+..+..     .++|+.|+|++
T Consensus       338 --------------------------------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  379 (461)
T 1z7x_W          338 --------------------------------------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD  379 (461)
T ss_dssp             --------------------------------------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             --------------------------------------hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence                                                  01235666666666666544443332     45666777777


Q ss_pred             ccccc----ccCccccCCCCCCEEECcCCcCccc
Q 045580          604 NFLSG----SIPQSLSNLKMIESLDLSHNDLSGQ  633 (764)
Q Consensus       604 N~l~~----~~p~~l~~l~~L~~LdLs~N~l~~~  633 (764)
                      |++++    .+|..+..+++|++||+++|++++.
T Consensus       380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            76665    5666666667777777777766643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.2e-33  Score=313.14  Aligned_cols=357  Identities=18%  Similarity=0.161  Sum_probs=283.9

Q ss_pred             CCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCc----cCCccccCCCCCCEEECCCCcccccCchhhhhCCC
Q 045580          240 KHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEV----RIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF  315 (764)
Q Consensus       240 ~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~  315 (764)
                      .++|++|++++|+++......++..+++|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+...++
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            35678888888888744444445568999999999999875    34667888899999999999988655556656666


Q ss_pred             ----CCCEEEeecccccce------eecCCCCCCceEEcccccCCCccccccc-----CCCCCCEEeCcCCccCCCc---
Q 045580          316 ----SLSFLSLSDNHLQGE------VVFPNSTNLCWLYLNNNHFSGKIQDGLS-----KATSLLELDLSNNMLYGQI---  377 (764)
Q Consensus       316 ----~L~~L~l~~n~l~~~------~~~~~~~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~---  377 (764)
                          +|++|++++|.+++.      ..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++..   
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                799999999998852      1678899999999999998765444332     3568999999999998643   


Q ss_pred             -cccccCCCCCCEEECcCCCCCCCCCCcc------cCCCccEEeccCCccccc----cchhhcCCCCCCEEEccCCcCCC
Q 045580          378 -PHWFGNLSGLQFLDISENQLSGSVPSSF------NLSSLRRLYMHMNAFNGS----IPGALRRSSSLTVLDLRDNQFSG  446 (764)
Q Consensus       378 -~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~  446 (764)
                       +..+..+++|++|++++|.+++..+..+      ..++|+.|++++|.+++.    ++..+..+++|++|++++|++++
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence             5667778999999999999876544333      256999999999999874    57778889999999999999876


Q ss_pred             cch-----hhhhcCCCccEEEccCCcCCcc----CCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccc
Q 045580          447 SIP-----IWINEFSYLGILLLRGNQLKGN----IPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVL  517 (764)
Q Consensus       447 ~~p-----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~  517 (764)
                      ...     ..+..+++|++|++++|++++.    ++..+..+++|++|++++|.+++..+..+...-             
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-------------  308 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL-------------  308 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh-------------
Confidence            432     2234689999999999999864    577777899999999999998754433332210             


Q ss_pred             ccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCccccc----CCccccCc
Q 045580          518 WETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGD----IPSEIGSL  593 (764)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----ip~~l~~l  593 (764)
                                                                      ....+.|+.|++++|.+++.    +|..+..+
T Consensus       309 ------------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  340 (461)
T 1z7x_W          309 ------------------------------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQN  340 (461)
T ss_dssp             ------------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred             ------------------------------------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhC
Confidence                                                            01124799999999999875    56777888


Q ss_pred             cccceecccccccccccCccccC-----CCCCCEEECcCCcCcc----cCcccccCCCCCCeEeccCCccccC
Q 045580          594 SEIRALNLSHNFLSGSIPQSLSN-----LKMIESLDLSHNDLSG----QIPPQLTELNFLSNFNVSYNHLSGP  657 (764)
Q Consensus       594 ~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~LdLs~N~l~~----~ip~~l~~l~~L~~L~ls~N~l~g~  657 (764)
                      ++|+.|++++|++++..+..+..     .++|+.|++++|++++    .+|..+..+++|++|++++|++++.
T Consensus       341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            99999999999999776666653     6799999999999996    7899999999999999999999763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.8e-30  Score=270.89  Aligned_cols=285  Identities=21%  Similarity=0.249  Sum_probs=190.9

Q ss_pred             CCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeC
Q 045580          291 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL  368 (764)
Q Consensus       291 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  368 (764)
                      +++.++++++.+. .+|..+   .++++.|++++|.+.+..  .+..+++|++|++++|.+++..|..+.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            3445555555444 444332   234455555555544432  3455566666666666666566666667777777777


Q ss_pred             cCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCcccc--ccchhhcCCCCCCEEEccCCcCC
Q 045580          369 SNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNG--SIPGALRRSSSLTVLDLRDNQFS  445 (764)
Q Consensus       369 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~  445 (764)
                      ++|.++ .+|..+.  ++|++|++++|.+++..+..+ .+++|+.|++++|.++.  ..+..+..+ +|+.|++++|+++
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            777666 3444333  567777777777765555545 66777777777776642  455666666 7778888888777


Q ss_pred             CcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccch
Q 045580          446 GSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRIS  525 (764)
Q Consensus       446 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  525 (764)
                      + +|..+.  ++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..                       
T Consensus       186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-----------------------  239 (332)
T 2ft3_A          186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-----------------------  239 (332)
T ss_dssp             S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-----------------------
T ss_pred             c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-----------------------
Confidence            4 454433  67888888888888777777888888888888888887655544433                       


Q ss_pred             hhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccc
Q 045580          526 TEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNF  605 (764)
Q Consensus       526 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~  605 (764)
                                                                 +++|+.|++++|+++ .+|..++.+++|+.|++++|+
T Consensus       240 -------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          240 -------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             -------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC
T ss_pred             -------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC
Confidence                                                       346788888888887 678888888888888888888


Q ss_pred             cccccCccccCC------CCCCEEECcCCcCc--ccCcccccCCCCCCeEeccCCc
Q 045580          606 LSGSIPQSLSNL------KMIESLDLSHNDLS--GQIPPQLTELNFLSNFNVSYNH  653 (764)
Q Consensus       606 l~~~~p~~l~~l------~~L~~LdLs~N~l~--~~ip~~l~~l~~L~~L~ls~N~  653 (764)
                      +++..+..+...      .+|+.|++++|.+.  +..|..+..++.|+.+++++|+
T Consensus       276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            887666666543      56888888888887  6677888888888888888874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=8.4e-30  Score=268.85  Aligned_cols=247  Identities=22%  Similarity=0.245  Sum_probs=130.9

Q ss_pred             CCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccE
Q 045580          334 PNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRR  412 (764)
Q Consensus       334 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~  412 (764)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|..+.  ++|++|++++|.+++..+..+ .+++|+.
T Consensus        73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  149 (330)
T 1xku_A           73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV  149 (330)
T ss_dssp             TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred             ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccE
Confidence            33444444444445554444555555555555555555554 3333322  455555555555554444333 4555555


Q ss_pred             EeccCCcccc--ccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCC
Q 045580          413 LYMHMNAFNG--SIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYN  490 (764)
Q Consensus       413 L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  490 (764)
                      |++++|.+..  ..+..+..+++|+.|++++|+++. +|..+.  ++|++|++++|++++..+..+..+++|+.|++++|
T Consensus       150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  226 (330)
T 1xku_A          150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN  226 (330)
T ss_dssp             EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred             EECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence            5555555532  344455556666666666666552 333322  55666666666666555555666666666666666


Q ss_pred             cCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccc
Q 045580          491 KFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILN  570 (764)
Q Consensus       491 ~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  570 (764)
                      .+++..+..+..                                                                  ++
T Consensus       227 ~l~~~~~~~~~~------------------------------------------------------------------l~  240 (330)
T 1xku_A          227 SISAVDNGSLAN------------------------------------------------------------------TP  240 (330)
T ss_dssp             CCCEECTTTGGG------------------------------------------------------------------ST
T ss_pred             cCceeChhhccC------------------------------------------------------------------CC
Confidence            655433333222                                                                  23


Q ss_pred             cccEEEcccCcccccCCccccCccccceecccccccccccCccccC------CCCCCEEECcCCcCcc--cCcccccCCC
Q 045580          571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSN------LKMIESLDLSHNDLSG--QIPPQLTELN  642 (764)
Q Consensus       571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~LdLs~N~l~~--~ip~~l~~l~  642 (764)
                      +|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+..      ...|+.|++++|.+..  ..|..+..+.
T Consensus       241 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~  319 (330)
T 1xku_A          241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY  319 (330)
T ss_dssp             TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred             CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence            5566666666665 55666666666666666666666544444432      2556666666666642  4455666666


Q ss_pred             CCCeEeccCCc
Q 045580          643 FLSNFNVSYNH  653 (764)
Q Consensus       643 ~L~~L~ls~N~  653 (764)
                      .++.+++++|+
T Consensus       320 ~l~~l~L~~N~  330 (330)
T 1xku_A          320 VRAAVQLGNYK  330 (330)
T ss_dssp             CGGGEEC----
T ss_pred             ceeEEEecccC
Confidence            66666666653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.9e-29  Score=266.28  Aligned_cols=249  Identities=24%  Similarity=0.241  Sum_probs=170.7

Q ss_pred             CccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEE
Q 045580          242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS  321 (764)
Q Consensus       242 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~  321 (764)
                      +++.++++++.+. .+|..+   .++|++|++++|.+++..|..|.++++|++|++++|.+.+..|.. +..+++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEE
Confidence            4555666666655 566544   356777777777777666667777777777777777776333433 35667777777


Q ss_pred             eecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCC--CccccccCCCCCCEEECcCCCCCC
Q 045580          322 LSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG--QIPHWFGNLSGLQFLDISENQLSG  399 (764)
Q Consensus       322 l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~  399 (764)
                      +++|.++...... .++|++|++++|.+++..+..+..+++|++|++++|.++.  ..+..+..+ +|++|++++|.+++
T Consensus       109 L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          109 ISKNHLVEIPPNL-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             CCSSCCCSCCSSC-CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCCCcCCccCccc-cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            7777666433111 1677777777777776666667778888888888887752  556666666 78888888887775


Q ss_pred             CCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCC
Q 045580          400 SVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHL  479 (764)
Q Consensus       400 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  479 (764)
                      . |..+ .++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+
T Consensus       187 l-~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l  263 (332)
T 2ft3_A          187 I-PKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL  263 (332)
T ss_dssp             C-CSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred             c-Cccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence            3 3322 257777777777777766677777777888888888777766667777777888888877777 667677777


Q ss_pred             CCCCEEeCCCCcCcCCcChhh
Q 045580          480 SLLNILDLSYNKFNGPIPVCF  500 (764)
Q Consensus       480 ~~L~~L~Ls~n~l~~~~p~~~  500 (764)
                      ++|+.|++++|++++..+..+
T Consensus       264 ~~L~~L~l~~N~l~~~~~~~~  284 (332)
T 2ft3_A          264 KLLQVVYLHTNNITKVGVNDF  284 (332)
T ss_dssp             TTCCEEECCSSCCCBCCTTSS
T ss_pred             ccCCEEECCCCCCCccChhHc
Confidence            777777777777765444433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=4.3e-29  Score=263.44  Aligned_cols=250  Identities=20%  Similarity=0.230  Sum_probs=176.7

Q ss_pred             CccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEE
Q 045580          242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS  321 (764)
Q Consensus       242 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~  321 (764)
                      +++.++++++.+. .+|..+   .+.+++|++++|.+++..+..|.++++|++|++++|.+.+..|.. +..+++|++|+
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEE
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEEE
Confidence            4455555555554 455433   245666666666666555555666666666666666666333433 35566666666


Q ss_pred             eecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCC--CccccccCCCCCCEEECcCCCCCC
Q 045580          322 LSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG--QIPHWFGNLSGLQFLDISENQLSG  399 (764)
Q Consensus       322 l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~  399 (764)
                      +++|.++.... .-.++|++|++++|.+++..+..+.++++|++|++++|.+..  ..+..+..+++|++|++++|.++.
T Consensus       107 Ls~n~l~~l~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          107 LSKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             CCSSCCSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCCCcCCccCh-hhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            66666554331 112577788888888877777778888888888888888753  566778888888888888888875


Q ss_pred             CCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCC
Q 045580          400 SVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHL  479 (764)
Q Consensus       400 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  479 (764)
                      . |... .++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+
T Consensus       186 l-~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l  262 (330)
T 1xku_A          186 I-PQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH  262 (330)
T ss_dssp             C-CSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             C-Cccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence            3 3332 277888888888888777788888888999999988888777778888888888999888888 677788888


Q ss_pred             CCCCEEeCCCCcCcCCcChhh
Q 045580          480 SLLNILDLSYNKFNGPIPVCF  500 (764)
Q Consensus       480 ~~L~~L~Ls~n~l~~~~p~~~  500 (764)
                      ++|++|++++|++++..+..+
T Consensus       263 ~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          263 KYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             SSCCEEECCSSCCCCCCTTSS
T ss_pred             CCcCEEECCCCcCCccChhhc
Confidence            888888888888876554444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=5.1e-31  Score=301.82  Aligned_cols=439  Identities=13%  Similarity=0.121  Sum_probs=244.3

Q ss_pred             CCCCcccccccCCCC-Cccccc-CCccccCCCCcce----e--------eeccccccCCCCCcEEECcCCccc---ccCc
Q 045580           27 IKKPQELWHKFFPKG-SITDFS-VEDSCRKTSGVPL----T--------VFVNTGICELKKLVELDLSKNNLY---GHLS   89 (764)
Q Consensus        27 ~~~p~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~----~--------~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~   89 (764)
                      ..+|+++|..++.+- ...+.. ....|+.|.++..    .        ..++..+..+++|++|+|+++...   +.+|
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~   93 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP   93 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccccc
Confidence            468999998887654 333332 3345766755421    1        112233557888999999875421   2222


Q ss_pred             h------------hhcCCCCCCEEECCCCCCCCcchhhhhCC--CCCCEEECcCCC-CCCCCChhhhccCCCCcEEEccC
Q 045580           90 P------------CLSNLTHIKVLDLSSNQLTGNLQSVIANI--KSLEYLSLDDNN-FEGSFSFNSLKNHSKLQVFKLSN  154 (764)
Q Consensus        90 ~------------~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~l~~  154 (764)
                      .            ....+++|++|+|++|.+++..+..+...  .+|++|++++|. +..........++++|++|++++
T Consensus        94 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~  173 (592)
T 3ogk_B           94 ENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE  173 (592)
T ss_dssp             TTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTT
T ss_pred             ccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcc
Confidence            2            22378899999999998887777767663  349999998886 21000012234788899999988


Q ss_pred             CCCCCcccc-C--CCCCCCCccEEEcCCCCCC-----CccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEcc
Q 045580          155 SLVKIETEE-F--PGLPEYQLKALNLRNCSLH-----ALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLL  226 (764)
Q Consensus       155 ~~~~~~~~~-~--~~~~~~~L~~L~L~~n~l~-----~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~  226 (764)
                      |.+...... +  .....++|++|++++|.++     .++..+..+++|++|++++|.+. .+|.. +..+++|++|+++
T Consensus       174 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~-~~~~~~L~~L~l~  251 (592)
T 3ogk_B          174 SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGF-FKAAANLEEFCGG  251 (592)
T ss_dssp             CEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHH-HHHCTTCCEEEEC
T ss_pred             ccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHH-HhhhhHHHhhccc
Confidence            865322100 0  0012356888888888875     24455667888888888888876 35544 4578888888887


Q ss_pred             CCcCc----cCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCC-ccccCCCCCCEEECCCCc
Q 045580          227 NNSLS----GNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIP-SSMSEMKRLESLDLSSNN  301 (764)
Q Consensus       227 ~n~l~----~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~  301 (764)
                      .....    ........+++|+.++++++... .+|..+. .+++|++|++++|.+++... ..+..+++|++|+++ +.
T Consensus       252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~  328 (592)
T 3ogk_B          252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NV  328 (592)
T ss_dssp             BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GG
T ss_pred             ccccccchHHHHHHhhccccccccCccccchh-HHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-Cc
Confidence            53221    11112235567777777765333 4554443 36677777777776554332 234667777777776 33


Q ss_pred             ccccCchhhhhCCCCCCEEEeec-----------cccccee---ecCCCCCCceEEcccccCCCcccccccC-CCCCCEE
Q 045580          302 FSGELPRQFLSGCFSLSFLSLSD-----------NHLQGEV---VFPNSTNLCWLYLNNNHFSGKIQDGLSK-ATSLLEL  366 (764)
Q Consensus       302 l~~~~p~~~~~~l~~L~~L~l~~-----------n~l~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L  366 (764)
                      +.+.....+...+++|++|++++           +.+++..   ....+++|++|+++.|.+++..+..+.. +++|+.|
T Consensus       329 ~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L  408 (592)
T 3ogk_B          329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDF  408 (592)
T ss_dssp             GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEE
T ss_pred             cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEE
Confidence            33233333345566777777772           3444321   1233566666666666665544444443 5566666


Q ss_pred             eCc----CCccCCC-----ccccccCCCCCCEEECcCCC--CCCCCCCcc--cCCCccEEeccCCccccc-cchhhcCCC
Q 045580          367 DLS----NNMLYGQ-----IPHWFGNLSGLQFLDISENQ--LSGSVPSSF--NLSSLRRLYMHMNAFNGS-IPGALRRSS  432 (764)
Q Consensus       367 ~L~----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~--~~~~L~~L~l~~n~l~~~-~~~~~~~~~  432 (764)
                      +++    .|.+++.     ++..+.++++|++|++++|.  +++..+..+  .+++|+.|++++|.+++. ++..+..++
T Consensus       409 ~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  488 (592)
T 3ogk_B          409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP  488 (592)
T ss_dssp             EEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT
T ss_pred             EEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc
Confidence            664    3444432     22234445566666665332  332222222  245555555555555432 233334455


Q ss_pred             CCCEEEccCCcCCCc-chhhhhcCCCccEEEccCCcCCc
Q 045580          433 SLTVLDLRDNQFSGS-IPIWINEFSYLGILLLRGNQLKG  470 (764)
Q Consensus       433 ~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~  470 (764)
                      +|+.|++++|.+++. ++.....+++|++|++++|++++
T Consensus       489 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            555555555554433 22233445555555555555543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1e-28  Score=263.12  Aligned_cols=278  Identities=22%  Similarity=0.228  Sum_probs=164.8

Q ss_pred             CCCCCEEECCCCcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEE
Q 045580          289 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL  366 (764)
Q Consensus       289 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  366 (764)
                      |+.....+.+++.++ .+|..+   .++|++|++++|.+++..  .+..+++|++|++++|.+++..+..+.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            334444566666665 555533   235555555555555433  34556666666666666666666667777777777


Q ss_pred             eCcCCccCCCccccccCCCCCCEEECcCCCCCCCCC-Ccc-cCCCccEEeccCC-ccccccchhhcCCCCCCEEEccCCc
Q 045580          367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVP-SSF-NLSSLRRLYMHMN-AFNGSIPGALRRSSSLTVLDLRDNQ  443 (764)
Q Consensus       367 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~-~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~  443 (764)
                      ++++|.+++..+..+..+++|++|++++|++++..+ ..+ .+++|+.|++++| .+.+..+..+..+++|++|++++|+
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  185 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD  185 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence            777777765444456677777777777777664333 233 5566666666665 2443344455555555555555555


Q ss_pred             CCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccccccccc
Q 045580          444 FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQR  523 (764)
Q Consensus       444 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  523 (764)
                      +++..|..+..+++|++|++++|+++...+..+..+++|+.|++++|+++                              
T Consensus       186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~------------------------------  235 (353)
T 2z80_A          186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD------------------------------  235 (353)
T ss_dssp             CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT------------------------------
T ss_pred             cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc------------------------------
Confidence            55555555555555555555555554222222233455555555555544                              


Q ss_pred             chhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCcccc---Cccccceec
Q 045580          524 ISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIG---SLSEIRALN  600 (764)
Q Consensus       524 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~---~l~~L~~L~  600 (764)
                                                                                  +..+..+.   ....++.++
T Consensus       236 ------------------------------------------------------------~~~~~~l~~~~~~~~l~~l~  255 (353)
T 2z80_A          236 ------------------------------------------------------------TFHFSELSTGETNSLIKKFT  255 (353)
T ss_dssp             ------------------------------------------------------------TCCCC------CCCCCCEEE
T ss_pred             ------------------------------------------------------------cccccccccccccchhhccc
Confidence                                                                        33222221   223344444


Q ss_pred             cccccccc----ccCccccCCCCCCEEECcCCcCcccCccc-ccCCCCCCeEeccCCccccCCCCC
Q 045580          601 LSHNFLSG----SIPQSLSNLKMIESLDLSHNDLSGQIPPQ-LTELNFLSNFNVSYNHLSGPTPNA  661 (764)
Q Consensus       601 Ls~N~l~~----~~p~~l~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~~p~~  661 (764)
                      |+++.+++    .+|..++.+++|+.||+++|+++ .+|.. +..+++|++|++++|++.|.+|..
T Consensus       256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l  320 (353)
T 2z80_A          256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  320 (353)
T ss_dssp             EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             cccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence            44444443    47788888999999999999998 45555 588999999999999999988843

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=5.1e-28  Score=252.29  Aligned_cols=252  Identities=23%  Similarity=0.247  Sum_probs=206.8

Q ss_pred             ceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCC--CCcc-cCCCccEEecc
Q 045580          340 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSV--PSSF-NLSSLRRLYMH  416 (764)
Q Consensus       340 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~-~~~~L~~L~l~  416 (764)
                      +.++.+++.++ .+|..+  .++|++|++++|.++...+..|..+++|++|++++|.++...  +..+ .+++|++|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            45666666666 344433  257888888888887555556788888888888888887432  3333 67888899998


Q ss_pred             CCccccccchhhcCCCCCCEEEccCCcCCCcch-hhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC-
Q 045580          417 MNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP-IWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG-  494 (764)
Q Consensus       417 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-  494 (764)
                      +|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++ 
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            88887 456678889999999999999986554 578889999999999999998888889999999999999999875 


Q ss_pred             CcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccE
Q 045580          495 PIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTG  574 (764)
Q Consensus       495 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  574 (764)
                      .+|..+..                                                                  +++|+.
T Consensus       166 ~~~~~~~~------------------------------------------------------------------l~~L~~  179 (306)
T 2z66_A          166 FLPDIFTE------------------------------------------------------------------LRNLTF  179 (306)
T ss_dssp             EECSCCTT------------------------------------------------------------------CTTCCE
T ss_pred             cchhHHhh------------------------------------------------------------------CcCCCE
Confidence            34544332                                                                  447999


Q ss_pred             EEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCC-CCCeEeccCCc
Q 045580          575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELN-FLSNFNVSYNH  653 (764)
Q Consensus       575 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~  653 (764)
                      |++++|++++..|..+..+++|+.|+|++|++++..+..+..+++|+.||+++|++++..|..+..++ +|++|++++|+
T Consensus       180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            99999999988899999999999999999999988888899999999999999999999999999984 99999999999


Q ss_pred             cccCCCCC
Q 045580          654 LSGPTPNA  661 (764)
Q Consensus       654 l~g~~p~~  661 (764)
                      ++|.++..
T Consensus       260 ~~~~c~~~  267 (306)
T 2z66_A          260 FACTCEHQ  267 (306)
T ss_dssp             EECSGGGH
T ss_pred             eecccChH
Confidence            99987643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=5.3e-27  Score=258.49  Aligned_cols=251  Identities=22%  Similarity=0.204  Sum_probs=197.4

Q ss_pred             ceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCC
Q 045580          340 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMN  418 (764)
Q Consensus       340 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n  418 (764)
                      ..++.++..++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..+ .+++|+.|++++|
T Consensus        57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            44555555555 3444332  567777777777776667777777778888888877777666666 6777888888888


Q ss_pred             ccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCc-CCccCCccccCCCCCCEEeCCCCcCcCCcC
Q 045580          419 AFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQ-LKGNIPNQLCHLSLLNILDLSYNKFNGPIP  497 (764)
Q Consensus       419 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  497 (764)
                      .+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|. +....+..+..+++|+.|++++|++++. |
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~  212 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P  212 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence            8776666677888888888888888886666678888888888888844 4433345688889999999999988742 2


Q ss_pred             hhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEc
Q 045580          498 VCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDF  577 (764)
Q Consensus       498 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  577 (764)
                      . +.                                                                  .+++|+.|+|
T Consensus       213 ~-~~------------------------------------------------------------------~l~~L~~L~L  225 (452)
T 3zyi_A          213 N-LT------------------------------------------------------------------PLVGLEELEM  225 (452)
T ss_dssp             C-CT------------------------------------------------------------------TCTTCCEEEC
T ss_pred             c-cc------------------------------------------------------------------ccccccEEEC
Confidence            1 11                                                                  1457899999


Q ss_pred             ccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccC
Q 045580          578 SCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGP  657 (764)
Q Consensus       578 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  657 (764)
                      ++|++++..|..|.++++|+.|+|++|++++..|..+.++++|+.|||++|++++..+..+..+++|+.|++++|++.|.
T Consensus       226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             cCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            99999988899999999999999999999988899999999999999999999988888889999999999999999998


Q ss_pred             CCCC
Q 045580          658 TPNA  661 (764)
Q Consensus       658 ~p~~  661 (764)
                      |...
T Consensus       306 C~~~  309 (452)
T 3zyi_A          306 CDIL  309 (452)
T ss_dssp             TTTH
T ss_pred             CCch
Confidence            7643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2e-27  Score=249.51  Aligned_cols=224  Identities=19%  Similarity=0.255  Sum_probs=152.8

Q ss_pred             CCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEc
Q 045580          361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDL  439 (764)
Q Consensus       361 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  439 (764)
                      ++++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+ .+++|++|++++|.++ .+|..+..+++|+.|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            34444444444444 33444444444444444444444 333333 4444444444444444 34445555555555555


Q ss_pred             cCCcCCCcchhhhh---------cCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccc
Q 045580          440 RDNQFSGSIPIWIN---------EFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQ  510 (764)
Q Consensus       440 ~~n~l~~~~p~~~~---------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~  510 (764)
                      ++|++.+.+|..+.         .+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+..        
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~--------  227 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH--------  227 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG--------
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc--------
Confidence            55555555554443         4788888888888887 677778888888888888888874 4433332        


Q ss_pred             cCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccc
Q 045580          511 AAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEI  590 (764)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l  590 (764)
                                                                                +++|+.|++++|++.+.+|..+
T Consensus       228 ----------------------------------------------------------l~~L~~L~Ls~n~~~~~~p~~~  249 (328)
T 4fcg_A          228 ----------------------------------------------------------LPKLEELDLRGCTALRNYPPIF  249 (328)
T ss_dssp             ----------------------------------------------------------CTTCCEEECTTCTTCCBCCCCT
T ss_pred             ----------------------------------------------------------CCCCCEEECcCCcchhhhHHHh
Confidence                                                                      3478888888888888888888


Q ss_pred             cCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccc
Q 045580          591 GSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLS  655 (764)
Q Consensus       591 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  655 (764)
                      +.+++|+.|+|++|++.+.+|..++++++|+.|+|++|++.+.+|+.+..+++|+.+++..|.+.
T Consensus       250 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            89999999999999888889988999999999999999999999999999999999988877554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.5e-29  Score=289.77  Aligned_cols=243  Identities=14%  Similarity=0.074  Sum_probs=133.4

Q ss_pred             ChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCC--CCccHhhhCCCCccEEEccCCCCCCccchHHh
Q 045580          137 SFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSL--HALPSFLLHQLDLRFIDLSHNKLQGTFPSWLL  214 (764)
Q Consensus       137 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l--~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~  214 (764)
                      +...+..+++|++|+++++.......   ..+.        .....  ..++.....+++|++|+|++|.+++..+.++.
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~---~~~~--------~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~  133 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFN---LIPE--------NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLA  133 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGT---CSCT--------TSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcc---cccc--------cccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHH
Confidence            44566788889999998754311110   0000        00001  11233344788899999998888766666655


Q ss_pred             hcCCC-CCEEEccCCcCcc---CCCCCCCCCCccEEEccCCCCCCCCCh---hHhhcCCCCcEEEcccCCCC----ccCC
Q 045580          215 QNNTK-LDTLYLLNNSLSG---NFQLPSSKHDLLRIDISHNKFSGQLPG---NMGKILPELLSLNLSENGFE----VRIP  283 (764)
Q Consensus       215 ~~l~~-L~~L~L~~n~l~~---~~~~~~~~~~L~~L~ls~n~l~~~~~~---~~~~~l~~L~~L~L~~n~~~----~~~~  283 (764)
                      ..+++ |++|++++|.-..   .......+++|++|++++|.+++....   .+...+++|++|++++|.++    ..++
T Consensus       134 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~  213 (592)
T 3ogk_B          134 KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE  213 (592)
T ss_dssp             HHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH
T ss_pred             HhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH
Confidence            43445 8888888876211   111112567788888888876644322   13334788888888888776    2344


Q ss_pred             ccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccc-----eeecCCCCCCceEEcccccCCCccccccc
Q 045580          284 SSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG-----EVVFPNSTNLCWLYLNNNHFSGKIQDGLS  358 (764)
Q Consensus       284 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  358 (764)
                      ..+.++++|++|++++|.+. .+|.. +..+++|+.|+++......     ...+..+++|+.|+++++.. ..++..+.
T Consensus       214 ~~~~~~~~L~~L~L~~~~~~-~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~  290 (592)
T 3ogk_B          214 TIARNCRSLVSVKVGDFEIL-ELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFP  290 (592)
T ss_dssp             HHHHHCTTCCEEECSSCBGG-GGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGG
T ss_pred             HHHhhCCCCcEEeccCccHH-HHHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHh
Confidence            45567788888888888777 45543 4677788887776532110     01333444455555544321 23333444


Q ss_pred             CCCCCCEEeCcCCccCCCcc-ccccCCCCCCEEECc
Q 045580          359 KATSLLELDLSNNMLYGQIP-HWFGNLSGLQFLDIS  393 (764)
Q Consensus       359 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~  393 (764)
                      .+++|++|++++|.+++... ..+..+++|++|+++
T Consensus       291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            44445555555444332211 223444444444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=7.1e-27  Score=256.53  Aligned_cols=251  Identities=23%  Similarity=0.231  Sum_probs=192.3

Q ss_pred             ceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCC
Q 045580          340 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMN  418 (764)
Q Consensus       340 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n  418 (764)
                      ..++.++..++ .+|..+.  ++++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..+ .+++|+.|++++|
T Consensus        46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            34555555555 3444332  566777777777776666667777777777777777776665666 6777777777777


Q ss_pred             ccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCc-CCccCCccccCCCCCCEEeCCCCcCcCCcC
Q 045580          419 AFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQ-LKGNIPNQLCHLSLLNILDLSYNKFNGPIP  497 (764)
Q Consensus       419 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  497 (764)
                      ++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|+ +....+..|..+++|++|++++|+++. +|
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~  201 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP  201 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc
Confidence            7776666667778888888888888876666677888888888888754 443334467888889999999888762 33


Q ss_pred             hhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEc
Q 045580          498 VCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDF  577 (764)
Q Consensus       498 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  577 (764)
                      . +.                                                                  .+++|+.|+|
T Consensus       202 ~-~~------------------------------------------------------------------~l~~L~~L~L  214 (440)
T 3zyj_A          202 N-LT------------------------------------------------------------------PLIKLDELDL  214 (440)
T ss_dssp             C-CT------------------------------------------------------------------TCSSCCEEEC
T ss_pred             c-cC------------------------------------------------------------------CCcccCEEEC
Confidence            1 11                                                                  1457899999


Q ss_pred             ccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccC
Q 045580          578 SCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGP  657 (764)
Q Consensus       578 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  657 (764)
                      ++|++++..|..|.++++|+.|+|++|++++..|..+.++++|+.|||++|++++..+..+..+++|+.|++++|++.|.
T Consensus       215 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             CCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence            99999988899999999999999999999988899999999999999999999988888889999999999999999998


Q ss_pred             CCCC
Q 045580          658 TPNA  661 (764)
Q Consensus       658 ~p~~  661 (764)
                      |...
T Consensus       295 C~l~  298 (440)
T 3zyj_A          295 CDIL  298 (440)
T ss_dssp             STTH
T ss_pred             CCch
Confidence            8643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.6e-27  Score=245.68  Aligned_cols=229  Identities=21%  Similarity=0.202  Sum_probs=163.9

Q ss_pred             CEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCC
Q 045580          364 LELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDN  442 (764)
Q Consensus       364 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  442 (764)
                      +.++.+++.++ .+|..+  .++|++|++++|.+++..+..+ .+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            34555555554 233322  3456666666666665554444 5666666666666666555666777777777777777


Q ss_pred             c-CCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccccccc
Q 045580          443 Q-FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETT  521 (764)
Q Consensus       443 ~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~  521 (764)
                      + ++...|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..                   
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------  151 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-------------------  151 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-------------------
Confidence            6 66555667777777777777777777666777777778888888888776544433332                   


Q ss_pred             ccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecc
Q 045580          522 QRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNL  601 (764)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~L  601 (764)
                                                                     +++|+.|++++|++++..+..+..+++|+.|++
T Consensus       152 -----------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          152 -----------------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (285)
T ss_dssp             -----------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             -----------------------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence                                                           346778888888888666667888888888888


Q ss_pred             cccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580          602 SHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA  661 (764)
Q Consensus       602 s~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~  661 (764)
                      ++|++++..|..++++++|+.|++++|++++..+..+..+++|++|++++|++.|.++..
T Consensus       185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~  244 (285)
T 1ozn_A          185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (285)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             CCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence            888888888888888888999999999888877777888888999999999988877754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=4.8e-27  Score=246.64  Aligned_cols=233  Identities=18%  Similarity=0.170  Sum_probs=163.2

Q ss_pred             CCCCEEEeeccccccee-ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECc
Q 045580          315 FSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDIS  393 (764)
Q Consensus       315 ~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  393 (764)
                      +.++.|++++|.++... .+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|+++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence            45555555555554333 3334445555555555544 44444444455555555555444 344444444455555554


Q ss_pred             CCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCC
Q 045580          394 ENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIP  473 (764)
Q Consensus       394 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~  473 (764)
                      +|++.+.+|..+.-     .         ..+..+.++++|++|++++|+++ .+|..++.+++|++|++++|++++ +|
T Consensus       159 ~n~~~~~~p~~~~~-----~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~  222 (328)
T 4fcg_A          159 ACPELTELPEPLAS-----T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LG  222 (328)
T ss_dssp             EETTCCCCCSCSEE-----E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CC
T ss_pred             CCCCccccChhHhh-----c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cc
Confidence            44444444432210     0         01122445889999999999998 788889999999999999999984 66


Q ss_pred             ccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccce
Q 045580          474 NQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGI  553 (764)
Q Consensus       474 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  553 (764)
                      ..+..+++|++|++++|++.+.+|..+..                                                   
T Consensus       223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~---------------------------------------------------  251 (328)
T 4fcg_A          223 PAIHHLPKLEELDLRGCTALRNYPPIFGG---------------------------------------------------  251 (328)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCBCCCCTTC---------------------------------------------------
T ss_pred             hhhccCCCCCEEECcCCcchhhhHHHhcC---------------------------------------------------
Confidence            67888999999999999998888876654                                                   


Q ss_pred             EEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCc
Q 045580          554 EFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS  631 (764)
Q Consensus       554 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~  631 (764)
                                     +++|+.|+|++|++.+.+|..++++++|+.|+|++|++.+.+|+.++++++|+.+++..|.+.
T Consensus       252 ---------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          252 ---------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             ---------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             ---------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence                           347899999999999999999999999999999999999999999999999999999987765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.3e-26  Score=241.57  Aligned_cols=247  Identities=23%  Similarity=0.256  Sum_probs=175.6

Q ss_pred             cEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccc--cCchhhhhCCCCCCEEE
Q 045580          244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSG--ELPRQFLSGCFSLSFLS  321 (764)
Q Consensus       244 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~~l~~L~~L~  321 (764)
                      +.++.+++.++ .+|..+   .++|++|++++|.++...+..|.++++|++|++++|.+..  ..+..+ ..+++|++|+
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEE
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEE
Confidence            45666666666 666644   3578888888888875444457788888888888887762  124443 4677888888


Q ss_pred             eeccccccee-ecCCCCCCceEEcccccCCCccc-ccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCC
Q 045580          322 LSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQ-DGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSG  399 (764)
Q Consensus       322 l~~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  399 (764)
                      +++|.+.... .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus        85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             CCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            8888777544 46667777777777777775544 467777777788887777776677777777777777777777765


Q ss_pred             -CCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCcccc
Q 045580          400 -SVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLC  477 (764)
Q Consensus       400 -~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~  477 (764)
                       ..|..+ .+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..|..+.
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence             455555 677777777777777766677777777777777777777766666677777777777777777777777777


Q ss_pred             CCC-CCCEEeCCCCcCcCC
Q 045580          478 HLS-LLNILDLSYNKFNGP  495 (764)
Q Consensus       478 ~l~-~L~~L~Ls~n~l~~~  495 (764)
                      .++ +|+.|++++|++++.
T Consensus       245 ~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCCTTCCEEECTTCCEECS
T ss_pred             hhhccCCEEEccCCCeecc
Confidence            663 777777777777654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=4e-27  Score=242.80  Aligned_cols=252  Identities=19%  Similarity=0.196  Sum_probs=193.3

Q ss_pred             ceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCC
Q 045580          340 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMN  418 (764)
Q Consensus       340 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n  418 (764)
                      +.++.+++.++. +|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+ .+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            455666666653 33322  3577777787777776666677777788888888887777666666 6778888888888


Q ss_pred             c-cccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcC
Q 045580          419 A-FNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIP  497 (764)
Q Consensus       419 ~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  497 (764)
                      . +....+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            6 665667778888888888888888887778888888889999999998887666778888999999999998875444


Q ss_pred             hhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEc
Q 045580          498 VCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDF  577 (764)
Q Consensus       498 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  577 (764)
                      ..+..                                                                  +++|+.|++
T Consensus       171 ~~~~~------------------------------------------------------------------l~~L~~L~l  184 (285)
T 1ozn_A          171 RAFRG------------------------------------------------------------------LHSLDRLLL  184 (285)
T ss_dssp             TTTTT------------------------------------------------------------------CTTCCEEEC
T ss_pred             HHhcC------------------------------------------------------------------ccccCEEEC
Confidence            33332                                                                  347889999


Q ss_pred             ccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccC
Q 045580          578 SCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGP  657 (764)
Q Consensus       578 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  657 (764)
                      ++|++++..|..++.+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+.. .....++.+..+.|.+.|.
T Consensus       185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~  263 (285)
T 1ozn_A          185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCS  263 (285)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEE
T ss_pred             CCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccC
Confidence            999999888999999999999999999999877778999999999999999998654421 1223455666788888888


Q ss_pred             CCCC
Q 045580          658 TPNA  661 (764)
Q Consensus       658 ~p~~  661 (764)
                      .|..
T Consensus       264 ~p~~  267 (285)
T 1ozn_A          264 LPQR  267 (285)
T ss_dssp             ESGG
T ss_pred             CchH
Confidence            8864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.4e-26  Score=246.61  Aligned_cols=253  Identities=23%  Similarity=0.257  Sum_probs=192.5

Q ss_pred             CccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEE
Q 045580          242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS  321 (764)
Q Consensus       242 ~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~  321 (764)
                      +|++|++++|+++ .++...+..+++|++|++++|.+++..|..|.++++|++|++++|.+. .+|...+..+++|++|+
T Consensus        53 ~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           53 AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEE
T ss_pred             cCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEE
Confidence            4555555555555 344432334778888888888887766777888888888888888887 66666567788888888


Q ss_pred             eeccccccee---ecCCCCCCceEEcccc-cCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCC
Q 045580          322 LSDNHLQGEV---VFPNSTNLCWLYLNNN-HFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQL  397 (764)
Q Consensus       322 l~~n~l~~~~---~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  397 (764)
                      +++|++++..   .+..+++|++|++++| .+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            8888777654   3677888888888888 46666667788888888888888888877788888888888888888887


Q ss_pred             CCCCCCcc-cCCCccEEeccCCccccccchhh---cCCCCCCEEEccCCcCCC----cchhhhhcCCCccEEEccCCcCC
Q 045580          398 SGSVPSSF-NLSSLRRLYMHMNAFNGSIPGAL---RRSSSLTVLDLRDNQFSG----SIPIWINEFSYLGILLLRGNQLK  469 (764)
Q Consensus       398 ~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~  469 (764)
                      .......+ .+++|+.|++++|.+++..+..+   .....++.++++++.+++    .+|.++..+++|++|++++|+++
T Consensus       211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~  290 (353)
T 2z80_A          211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK  290 (353)
T ss_dssp             TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred             ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence            64333333 57888888888888876554333   346778999999999886    46888999999999999999999


Q ss_pred             ccCCcc-ccCCCCCCEEeCCCCcCcCCcC
Q 045580          470 GNIPNQ-LCHLSLLNILDLSYNKFNGPIP  497 (764)
Q Consensus       470 ~~~~~~-~~~l~~L~~L~Ls~n~l~~~~p  497 (764)
                       .+|.. +..+++|++|++++|++++..|
T Consensus       291 -~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          291 -SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             -CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             -ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence             56655 5899999999999999998766

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=4.8e-28  Score=252.83  Aligned_cols=249  Identities=22%  Similarity=0.267  Sum_probs=181.9

Q ss_pred             CCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccC-CCcccccc-------CCCCCCEEECcCCCCCCCCCCcc-
Q 045580          335 NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY-GQIPHWFG-------NLSGLQFLDISENQLSGSVPSSF-  405 (764)
Q Consensus       335 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~-  405 (764)
                      ..++|+.|++++|.+  .+|..+...  |+.|++++|.+. ..+|..+.       ++++|++|++++|++++.+|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            345667777777777  445544433  777777777773 34454444       57777777777777777666643 


Q ss_pred             --cCCCccEEeccCCccccccchhhcCC-----CCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCcc--CCccc
Q 045580          406 --NLSSLRRLYMHMNAFNGSIPGALRRS-----SSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGN--IPNQL  476 (764)
Q Consensus       406 --~~~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~~  476 (764)
                        .+++|++|++++|.+++. |..+..+     ++|++|++++|++++..|..++.+++|++|++++|++.+.  .+..+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence              577777777777777766 6666555     7888888888888877778888888888888888887764  23344


Q ss_pred             --cCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceE
Q 045580          477 --CHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIE  554 (764)
Q Consensus       477 --~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  554 (764)
                        ..+++|++|++++|++++. +.....+.                                                  
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~--------------------------------------------------  224 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETP-SGVCSALA--------------------------------------------------  224 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCH-HHHHHHHH--------------------------------------------------
T ss_pred             HhccCCCCCEEECCCCcCcch-HHHHHHHH--------------------------------------------------
Confidence              7788999999999988631 11000000                                                  


Q ss_pred             EeeccccccccccccccccEEEcccCcccccCC-ccccCccccceecccccccccccCccccCCCCCCEEECcCCcCccc
Q 045580          555 FMTKKRYESYKGDILNYMTGLDFSCNELTGDIP-SEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQ  633 (764)
Q Consensus       555 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~  633 (764)
                                  ..+++|+.||+++|++++.+| ..+..+++|+.|+|++|+++ .+|..+.  ++|+.|||++|++++.
T Consensus       225 ------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          225 ------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             ------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC
T ss_pred             ------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC
Confidence                        113578899999999988775 55677889999999999998 7888776  8899999999999976


Q ss_pred             CcccccCCCCCCeEeccCCcccc
Q 045580          634 IPPQLTELNFLSNFNVSYNHLSG  656 (764)
Q Consensus       634 ip~~l~~l~~L~~L~ls~N~l~g  656 (764)
                       |. +..+++|++|++++|++++
T Consensus       290 -p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          290 -PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -CC-TTTSCEEEEEECTTCTTTC
T ss_pred             -hh-HhhCCCCCEEeccCCCCCC
Confidence             66 8889999999999999886

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=5.8e-28  Score=252.86  Aligned_cols=247  Identities=22%  Similarity=0.204  Sum_probs=190.8

Q ss_pred             CCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEe
Q 045580          335 NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLY  414 (764)
Q Consensus       335 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~  414 (764)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..    ..++|+.|+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~  105 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLH  105 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEEE
Confidence            34566777777777776666677777778888888777765443  777778888888887776433    236788888


Q ss_pred             ccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCcccc-CCCCCCEEeCCCCcCc
Q 045580          415 MHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLC-HLSLLNILDLSYNKFN  493 (764)
Q Consensus       415 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~  493 (764)
                      +++|.+++..+.   .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+. .+++|++|++++|.++
T Consensus       106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            888887765543   356788999999988877777888888999999999998877666663 6889999999999886


Q ss_pred             CCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccccccccccc
Q 045580          494 GPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMT  573 (764)
Q Consensus       494 ~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  573 (764)
                      +. |..                                                                   ..+++|+
T Consensus       183 ~~-~~~-------------------------------------------------------------------~~l~~L~  194 (317)
T 3o53_A          183 DV-KGQ-------------------------------------------------------------------VVFAKLK  194 (317)
T ss_dssp             EE-ECC-------------------------------------------------------------------CCCTTCC
T ss_pred             cc-ccc-------------------------------------------------------------------cccccCC
Confidence            42 100                                                                   0145789


Q ss_pred             EEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCc-ccCcccccCCCCCCeEeccCC
Q 045580          574 GLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS-GQIPPQLTELNFLSNFNVSYN  652 (764)
Q Consensus       574 ~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls~N  652 (764)
                      .|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..++.|+.+++++|
T Consensus       195 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          195 TLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             EEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             EEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            99999999985 5556889999999999999998 57888999999999999999998 788889999999999999954


Q ss_pred             -ccccCCCC
Q 045580          653 -HLSGPTPN  660 (764)
Q Consensus       653 -~l~g~~p~  660 (764)
                       .+.|..|.
T Consensus       273 ~~l~~~~~~  281 (317)
T 3o53_A          273 KKLTGQNEE  281 (317)
T ss_dssp             HHHHSSSSC
T ss_pred             hhccCCchh
Confidence             67775554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=1.8e-29  Score=289.13  Aligned_cols=490  Identities=15%  Similarity=0.102  Sum_probs=244.0

Q ss_pred             CCCCCcccccccCCCCC-ccccc-CCccccCCCCcceeeeccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEEC
Q 045580           26 IIKKPQELWHKFFPKGS-ITDFS-VEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDL  103 (764)
Q Consensus        26 ~~~~p~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  103 (764)
                      +..+|+++|..++.+=. ..++. ....|+.|.++..           ...+.++++.+... .....+..+++|++|+|
T Consensus         6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~-----------~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L   73 (594)
T 2p1m_B            6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIER-----------WCRRKVFIGNCYAV-SPATVIRRFPKVRSVEL   73 (594)
T ss_dssp             ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHH-----------HHCCEEEESSTTSS-CHHHHHHHCTTCCEEEE
T ss_pred             hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhh-----------hhceEEeecccccc-CHHHHHhhCCCceEEec
Confidence            35789999998875544 44432 3445777876621           11234555543322 22344566777777777


Q ss_pred             CCCCCCCc---------------chhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCC
Q 045580          104 SSNQLTGN---------------LQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLP  168 (764)
Q Consensus       104 s~n~l~~~---------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  168 (764)
                      +++.....               ++.....+++|++|++++|.+++..+......+++|++|++++|.            
T Consensus        74 ~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~------------  141 (594)
T 2p1m_B           74 KGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE------------  141 (594)
T ss_dssp             ECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE------------
T ss_pred             cCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC------------
Confidence            77642110               111223455555555555554422221111123333333332221            


Q ss_pred             CCCccEEEcCCCCCCC--ccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEE
Q 045580          169 EYQLKALNLRNCSLHA--LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRI  246 (764)
Q Consensus       169 ~~~L~~L~L~~n~l~~--lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L  246 (764)
                                  .++.  ++.....+++|++|++++|.+++..+.++.                    .....+++|++|
T Consensus       142 ------------~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~--------------------~~~~~~~~L~~L  189 (594)
T 2p1m_B          142 ------------GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS--------------------HFPDTYTSLVSL  189 (594)
T ss_dssp             ------------EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG--------------------GSCTTCCCCCEE
T ss_pred             ------------CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH--------------------HHhhcCCcCcEE
Confidence                        1111  233333455555555555544432222211                    122344555555


Q ss_pred             EccCCC--CCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCc-------ccccCchhhhhCCCCC
Q 045580          247 DISHNK--FSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNN-------FSGELPRQFLSGCFSL  317 (764)
Q Consensus       247 ~ls~n~--l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-------l~~~~p~~~~~~l~~L  317 (764)
                      ++++|.  +.......+...+++|++|++++|.....++..+..+++|++|+++.+.       +. .++.. +.++++|
T Consensus       190 ~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~-l~~~~~L  267 (594)
T 2p1m_B          190 NISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVA-LSGCKEL  267 (594)
T ss_dssp             ECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHH-HHTCTTC
T ss_pred             EecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHH-HhcCCCc
Confidence            555554  1111111222235777777777763222355566667777777754442       22 23332 3566666


Q ss_pred             CEE-Eeeccccccee-ecCCCCCCceEEcccccCCCccc-ccccCCCCCCEEeCcCCccCCC-ccccccCCCCCCEEECc
Q 045580          318 SFL-SLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKIQ-DGLSKATSLLELDLSNNMLYGQ-IPHWFGNLSGLQFLDIS  393 (764)
Q Consensus       318 ~~L-~l~~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~  393 (764)
                      +.+ .+.+....... .+..+++|++|++++|.+++... ..+..+++|++|++++| +.+. ++.....+++|++|++.
T Consensus       268 ~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             CEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred             ccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence            666 22221111111 11133445555555554432211 11334455555555544 2211 11112234445555443


Q ss_pred             CCCCCCCCCCcccCCCccEEeccCCccccccchhh-cCCCCCCEEEccCCcCCCcchhhhh-cCCCccEEEcc--C----
Q 045580          394 ENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGAL-RRSSSLTVLDLRDNQFSGSIPIWIN-EFSYLGILLLR--G----  465 (764)
Q Consensus       394 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~--~----  465 (764)
                      ++.-.|              ....+.+++.....+ ..+++|+.|++..|.+++..+..+. .+++|+.|+++  +    
T Consensus       347 ~~~~~g--------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~  412 (594)
T 2p1m_B          347 PSEPFV--------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP  412 (594)
T ss_dssp             CSCTTC--------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred             cCcccc--------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence            321000              001223333222222 2467788887777777765555554 57888888887  3    


Q ss_pred             CcCCcc-----CCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccc
Q 045580          466 NQLKGN-----IPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSE  540 (764)
Q Consensus       466 n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (764)
                      +.+++.     ++..+..+++|+.|++++ .+++..+..+..                                      
T Consensus       413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~--------------------------------------  453 (594)
T 2p1m_B          413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT--------------------------------------  453 (594)
T ss_dssp             CTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH--------------------------------------
T ss_pred             ccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH--------------------------------------
Confidence            455521     122255678888888866 554322221111                                      


Q ss_pred             cccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccc-cCccccceecccccccccccCc-cccCCC
Q 045580          541 VKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEI-GSLSEIRALNLSHNFLSGSIPQ-SLSNLK  618 (764)
Q Consensus       541 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~  618 (764)
                                                 .+++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. .+..++
T Consensus       454 ---------------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          454 ---------------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             ---------------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             ---------------------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence                                       13478888998888876655555 6688899999999988755444 445688


Q ss_pred             CCCEEECcCCcCcccCcccc-cCCCCCCeEeccCCcc
Q 045580          619 MIESLDLSHNDLSGQIPPQL-TELNFLSNFNVSYNHL  654 (764)
Q Consensus       619 ~L~~LdLs~N~l~~~ip~~l-~~l~~L~~L~ls~N~l  654 (764)
                      +|+.|++++|+++......+ ..++.++...+..+.-
T Consensus       507 ~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          507 TMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             GSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             CCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence            99999999998865444444 4567776666665543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.9e-25  Score=252.14  Aligned_cols=268  Identities=29%  Similarity=0.357  Sum_probs=141.6

Q ss_pred             CCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEccc
Q 045580          267 ELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNN  346 (764)
Q Consensus       267 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~  346 (764)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.+. .+|.    .+++|++|++++|++++...  .+++|++|++++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~  110 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFS  110 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECS
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcC
Confidence            3455555555554 3444333  45555555555554 3443    23445555555444443222  334555555555


Q ss_pred             ccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccch
Q 045580          347 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPG  426 (764)
Q Consensus       347 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  426 (764)
                      |.+++. |.   .+++|+.|++++|.+++ +|..   +++|++|++++|.+++. |.  .+.+|+.|++++|.+++ +| 
T Consensus       111 N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~--~~~~L~~L~L~~N~l~~-l~-  177 (622)
T 3g06_A          111 NPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA--LPSELCKLWAYNNQLTS-LP-  177 (622)
T ss_dssp             CCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSSCCSC-CC-
T ss_pred             CcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC--ccCCCCEEECCCCCCCC-Cc-
Confidence            555532 22   34566666666666653 3332   35666666666666542 22  23456666666666653 33 


Q ss_pred             hhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhh
Q 045580          427 ALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLW  506 (764)
Q Consensus       427 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~  506 (764)
                        ..+++|+.|++++|++++ +|.   ..++|+.|++++|.++ .+|..   +++|+.|++++|++++ +|.        
T Consensus       178 --~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp~--------  238 (622)
T 3g06_A          178 --MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPV--------  238 (622)
T ss_dssp             --CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCC--------
T ss_pred             --ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CCC--------
Confidence              334566666666666653 332   2355666666666666 33322   3556666666666653 220        


Q ss_pred             cccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccC
Q 045580          507 TLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDI  586 (764)
Q Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~i  586 (764)
                                                                                   .+++|+.|+|++|+++ .+
T Consensus       239 -------------------------------------------------------------~l~~L~~L~Ls~N~L~-~l  256 (622)
T 3g06_A          239 -------------------------------------------------------------LPSELKELMVSGNRLT-SL  256 (622)
T ss_dssp             -------------------------------------------------------------CCTTCCEEECCSSCCS-CC
T ss_pred             -------------------------------------------------------------CCCcCcEEECCCCCCC-cC
Confidence                                                                         0224566666666666 34


Q ss_pred             CccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCC
Q 045580          587 PSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELN  642 (764)
Q Consensus       587 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~  642 (764)
                      |.   .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|++++.+|..+..++
T Consensus       257 p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          257 PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            44   4455666666666666 5566666666666666666666666665555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=3e-25  Score=243.57  Aligned_cols=246  Identities=23%  Similarity=0.247  Sum_probs=212.5

Q ss_pred             ccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEe
Q 045580          243 LLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL  322 (764)
Q Consensus       243 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l  322 (764)
                      .+.++.++..++ .+|..+   .++++.|+|++|.++...+..|.++++|++|++++|.+. .++...+.++++|++|++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred             CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence            456777777777 778765   468889999999998877888999999999999999988 556555678899999999


Q ss_pred             eccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCC-ccccccCCCCCCEEECcCCCCCC
Q 045580          323 SDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ-IPHWFGNLSGLQFLDISENQLSG  399 (764)
Q Consensus       323 ~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~  399 (764)
                      ++|.++...  .+..+++|++|++++|.++...+..|..+++|++|++++|...+. .+..|.++++|++|++++|.++ 
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-  198 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-  198 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence            999888765  578889999999999999987778899999999999999544434 4457899999999999999998 


Q ss_pred             CCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCC
Q 045580          400 SVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHL  479 (764)
Q Consensus       400 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  479 (764)
                      .+|....+++|+.|++++|.+++..|..|.++++|+.|++++|++++..+..+..+++|++|+|++|++++..+..+..+
T Consensus       199 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          199 EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence            45555588999999999999998889999999999999999999998888999999999999999999998777888999


Q ss_pred             CCCCEEeCCCCcCcC
Q 045580          480 SLLNILDLSYNKFNG  494 (764)
Q Consensus       480 ~~L~~L~Ls~n~l~~  494 (764)
                      ++|+.|++++|++..
T Consensus       279 ~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          279 HHLERIHLHHNPWNC  293 (440)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             cCCCEEEcCCCCccC
Confidence            999999999999864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=3e-25  Score=244.51  Aligned_cols=247  Identities=25%  Similarity=0.267  Sum_probs=205.1

Q ss_pred             ccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEe
Q 045580          243 LLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL  322 (764)
Q Consensus       243 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l  322 (764)
                      ...++.++..++ .+|..+   .+++++|+|++|.+++..+..|.++++|++|++++|.+. .++...+.++++|++|++
T Consensus        56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence            345666666666 677654   367888888888888777788888888888888888887 444444577888888888


Q ss_pred             eccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCc-cccccCCCCCCEEECcCCCCCC
Q 045580          323 SDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI-PHWFGNLSGLQFLDISENQLSG  399 (764)
Q Consensus       323 ~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~  399 (764)
                      ++|.++...  .+..+++|++|++++|.++...+..|..+++|++|++++|...+.+ +..|..+++|++|++++|.+++
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence            888887655  4777888999999999988777778899999999999985443344 4568899999999999999985


Q ss_pred             CCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCC
Q 045580          400 SVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHL  479 (764)
Q Consensus       400 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  479 (764)
                      . |....+++|+.|++++|.+++..|..|.++++|+.|++++|++++..+..+..+++|+.|+|++|++++..+..+..+
T Consensus       211 ~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  289 (452)
T 3zyi_A          211 M-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL  289 (452)
T ss_dssp             C-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred             c-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence            4 554488999999999999999889999999999999999999998889999999999999999999997777888999


Q ss_pred             CCCCEEeCCCCcCcCC
Q 045580          480 SLLNILDLSYNKFNGP  495 (764)
Q Consensus       480 ~~L~~L~Ls~n~l~~~  495 (764)
                      ++|+.|++++|++...
T Consensus       290 ~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          290 RYLVELHLHHNPWNCD  305 (452)
T ss_dssp             TTCCEEECCSSCEECS
T ss_pred             cCCCEEEccCCCcCCC
Confidence            9999999999998643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=7e-25  Score=247.47  Aligned_cols=264  Identities=28%  Similarity=0.302  Sum_probs=220.4

Q ss_pred             CCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCc
Q 045580          290 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLS  369 (764)
Q Consensus       290 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  369 (764)
                      .+++.|++++|.+. .+|..+.   ++|+.|++++|.++....  .+++|++|++++|.+++ +|.   .+++|++|+++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            36899999999998 8887653   799999999999986554  57899999999999985 444   67999999999


Q ss_pred             CCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcch
Q 045580          370 NNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP  449 (764)
Q Consensus       370 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  449 (764)
                      +|.+++ +|.   .+++|+.|++++|++++ +|..  +++|+.|++++|.+++ +|.   .+++|+.|++++|++++ +|
T Consensus       110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~--l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~  177 (622)
T 3g06_A          110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL--PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP  177 (622)
T ss_dssp             SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred             CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC--CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc
Confidence            999985 444   57899999999999986 3432  4899999999999985 343   35789999999999985 55


Q ss_pred             hhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHH
Q 045580          450 IWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFE  529 (764)
Q Consensus       450 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (764)
                         ..+++|+.|++++|++++ +|..   +++|+.|++++|.++. +|..                              
T Consensus       178 ---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~~------------------------------  219 (622)
T 3g06_A          178 ---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL------------------------------  219 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCC------------------------------
T ss_pred             ---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCCC------------------------------
Confidence               567899999999999985 5543   4789999999998873 2211                              


Q ss_pred             HhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccc
Q 045580          530 AYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGS  609 (764)
Q Consensus       530 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  609 (764)
                                                             +++|+.|++++|++++ +|   ..+++|+.|+|++|+|+ .
T Consensus       220 ---------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~  255 (622)
T 3g06_A          220 ---------------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-S  255 (622)
T ss_dssp             ---------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-C
T ss_pred             ---------------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-c
Confidence                                                   2478999999999995 66   56689999999999999 5


Q ss_pred             cCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580          610 IPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA  661 (764)
Q Consensus       610 ~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~  661 (764)
                      +|.   .+++|+.|+|++|+|+ .+|..+..+++|+.|++++|++++.+|..
T Consensus       256 lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          256 LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred             CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence            676   6789999999999999 78999999999999999999999987753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1e-26  Score=257.42  Aligned_cols=236  Identities=22%  Similarity=0.198  Sum_probs=169.2

Q ss_pred             CCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEec
Q 045580          336 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYM  415 (764)
Q Consensus       336 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l  415 (764)
                      +++|+.|++++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+    .++|+.|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence            4567777777777777777777778888888888887775544  7777888888888887764332    367777777


Q ss_pred             cCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCcccc-CCCCCCEEeCCCCcCcC
Q 045580          416 HMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLC-HLSLLNILDLSYNKFNG  494 (764)
Q Consensus       416 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~  494 (764)
                      ++|.+++..+.   .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            77777765543   346778888888888777777777777888888888888776676665 67778888888887764


Q ss_pred             CcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccE
Q 045580          495 PIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTG  574 (764)
Q Consensus       495 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  574 (764)
                      ..+.                                                                    ..++.|+.
T Consensus       184 ~~~~--------------------------------------------------------------------~~l~~L~~  195 (487)
T 3oja_A          184 VKGQ--------------------------------------------------------------------VVFAKLKT  195 (487)
T ss_dssp             EECC--------------------------------------------------------------------CCCTTCCE
T ss_pred             cccc--------------------------------------------------------------------ccCCCCCE
Confidence            3110                                                                    01346777


Q ss_pred             EEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCc-ccCcccccCCCCCCeEecc
Q 045580          575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS-GQIPPQLTELNFLSNFNVS  650 (764)
Q Consensus       575 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls  650 (764)
                      |+|++|++++ +|..++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       196 L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          196 LDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             EECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             EECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            8888888775 44447777778888888887774 6767777777888888888777 6667777777777777765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=2.7e-28  Score=279.33  Aligned_cols=375  Identities=15%  Similarity=0.126  Sum_probs=232.8

Q ss_pred             cCCCCCEEEccCCcCccCC--CCCCCCCCccEEEccCC-CCCCCCChhHhhcCCCCcEEEcccCCCCccCCcccc----C
Q 045580          216 NNTKLDTLYLLNNSLSGNF--QLPSSKHDLLRIDISHN-KFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMS----E  288 (764)
Q Consensus       216 ~l~~L~~L~L~~n~l~~~~--~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~----~  288 (764)
                      .+++|++|+|++|.+++..  .+...+++|++|++++| .+.......+...+++|++|++++|.+++..+.++.    .
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            4445555555555443210  00012445555555555 332221223333467777777777765544333332    5


Q ss_pred             CCCCCEEECCCCc--ccccCchhhhhCCCCCCEEEeecc-ccccee-ecCCCCCCceEEccccc-------CCCcccccc
Q 045580          289 MKRLESLDLSSNN--FSGELPRQFLSGCFSLSFLSLSDN-HLQGEV-VFPNSTNLCWLYLNNNH-------FSGKIQDGL  357 (764)
Q Consensus       289 l~~L~~L~Ls~n~--l~~~~p~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~~L~~L~L~~n~-------l~~~~~~~l  357 (764)
                      +++|++|++++|.  +.......+...+++|+.|++++| .+.+.. .+..+++|+.|++..+.       +.+ ++..+
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l  261 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVAL  261 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHH
Confidence            5677777777765  211111222344677777777776 333322 34456677777755443       232 33467


Q ss_pred             cCCCCCCEE-eCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc--cCCCccEEeccCCccccc-cchhhcCCCC
Q 045580          358 SKATSLLEL-DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF--NLSSLRRLYMHMNAFNGS-IPGALRRSSS  433 (764)
Q Consensus       358 ~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~-~~~~~~~~~~  433 (764)
                      .++++|+.+ .+.+... +.++..+..+++|++|++++|.+++.....+  .+++|+.|++++| +... ++.....+++
T Consensus       262 ~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          262 SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD  339 (594)
T ss_dssp             HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred             hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence            788888888 4444332 2455555678899999999988664333222  6788999999888 3322 3333345889


Q ss_pred             CCEEEcc---------CCcCCCcchhhh-hcCCCccEEEccCCcCCccCCcccc-CCCCCCEEeCC--C----CcCcCCc
Q 045580          434 LTVLDLR---------DNQFSGSIPIWI-NEFSYLGILLLRGNQLKGNIPNQLC-HLSLLNILDLS--Y----NKFNGPI  496 (764)
Q Consensus       434 L~~L~L~---------~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~~~  496 (764)
                      |++|++.         .+.+++.....+ ..+++|+.|.+..|.+++..+..+. .+++|+.|+++  +    +.+++..
T Consensus       340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~  419 (594)
T 2p1m_B          340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP  419 (594)
T ss_dssp             CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred             CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence            9999984         345554433334 3589999999999998876666554 58899999998  3    3333111


Q ss_pred             Ch-hhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEE
Q 045580          497 PV-CFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGL  575 (764)
Q Consensus       497 p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  575 (764)
                      .. .+..+                                                              ...+++|+.|
T Consensus       420 ~~~~~~~l--------------------------------------------------------------~~~~~~L~~L  437 (594)
T 2p1m_B          420 LDIGFGAI--------------------------------------------------------------VEHCKDLRRL  437 (594)
T ss_dssp             THHHHHHH--------------------------------------------------------------HHHCTTCCEE
T ss_pred             hhhHHHHH--------------------------------------------------------------HhhCCCccEE
Confidence            00 00000                                                              0125589999


Q ss_pred             EcccCcccccCCccccC-ccccceecccccccccccCccc-cCCCCCCEEECcCCcCcccCcc-cccCCCCCCeEeccCC
Q 045580          576 DFSCNELTGDIPSEIGS-LSEIRALNLSHNFLSGSIPQSL-SNLKMIESLDLSHNDLSGQIPP-QLTELNFLSNFNVSYN  652 (764)
Q Consensus       576 dLs~N~l~~~ip~~l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~ls~N  652 (764)
                      ++++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. ....+++|++|++++|
T Consensus       438 ~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~  516 (594)
T 2p1m_B          438 SLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC  516 (594)
T ss_dssp             ECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred             eecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence            9987 777766666665 8999999999999987766665 6789999999999999765544 4455899999999999


Q ss_pred             cccc
Q 045580          653 HLSG  656 (764)
Q Consensus       653 ~l~g  656 (764)
                      +++.
T Consensus       517 ~~~~  520 (594)
T 2p1m_B          517 SVSF  520 (594)
T ss_dssp             CCBH
T ss_pred             CCCH
Confidence            8843

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=1.9e-26  Score=240.68  Aligned_cols=250  Identities=22%  Similarity=0.229  Sum_probs=147.7

Q ss_pred             ccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCccccccc-------
Q 045580          286 MSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLS-------  358 (764)
Q Consensus       286 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-------  358 (764)
                      ++..++|+.|++++|.+  .+|..+...   |+.|++++|.+...                     .++..+.       
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~---------------------~~~~~~~~~~~~~~   92 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAA---------------------RIPSRILFGALRVL   92 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEE---------------------ECBHHHHHHHHHHH
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCC---------------------CcCHHHHHHHHHhc
Confidence            45556777778888777  667655432   56666666655321                     1111111       


Q ss_pred             CCCCCCEEeCcCCccCCCccccc--cCCCCCCEEECcCCCCCCCCCCcc-cC-----CCccEEeccCCccccccchhhcC
Q 045580          359 KATSLLELDLSNNMLYGQIPHWF--GNLSGLQFLDISENQLSGSVPSSF-NL-----SSLRRLYMHMNAFNGSIPGALRR  430 (764)
Q Consensus       359 ~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~-~~-----~~L~~L~l~~n~l~~~~~~~~~~  430 (764)
                      ++++|++|++++|.+++.+|..+  ..+++|++|++++|++++. |..+ .+     ++|++|++++|++.+..+..+..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            34444445555554444444433  4455555555555555544 3333 22     55566666666665555556666


Q ss_pred             CCCCCEEEccCCcCCCc--chhhh--hcCCCccEEEccCCcCCc--cCC-ccccCCCCCCEEeCCCCcCcCCcChhhhcc
Q 045580          431 SSSLTVLDLRDNQFSGS--IPIWI--NEFSYLGILLLRGNQLKG--NIP-NQLCHLSLLNILDLSYNKFNGPIPVCFANV  503 (764)
Q Consensus       431 ~~~L~~L~L~~n~l~~~--~p~~~--~~l~~L~~L~L~~n~l~~--~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  503 (764)
                      +++|++|++++|++.+.  .|..+  ..+++|++|++++|++++  .++ ..+..+++|++|++++|++++..|....  
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--  249 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC--  249 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC--
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh--
Confidence            66666666666666544  23333  566677777777776662  112 2334567777777777777654431110  


Q ss_pred             hhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCccc
Q 045580          504 TLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELT  583 (764)
Q Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  583 (764)
                                                                                     ..+++|+.|+|++|+++
T Consensus       250 ---------------------------------------------------------------~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          250 ---------------------------------------------------------------DWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             ---------------------------------------------------------------CCCTTCCEEECTTSCCS
T ss_pred             ---------------------------------------------------------------hhcCCCCEEECCCCccC
Confidence                                                                           01346777888888877


Q ss_pred             ccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcc
Q 045580          584 GDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG  632 (764)
Q Consensus       584 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~  632 (764)
                       .+|..+.  ++|+.|+|++|++++. |. +..+++|+.|++++|++++
T Consensus       267 -~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          267 -QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             -hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence             6777666  7788888888888855 55 7888888888888888875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.2e-26  Score=240.84  Aligned_cols=237  Identities=22%  Similarity=0.179  Sum_probs=138.4

Q ss_pred             ccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEe
Q 045580          243 LLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL  322 (764)
Q Consensus       243 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l  322 (764)
                      ++..+++.+.+. ..+..++..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+   +..+++|++|++
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L   87 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL   87 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence            344555555554 4444555556678888888888877666777888888888888888774433   466777777777


Q ss_pred             ecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCC
Q 045580          323 SDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVP  402 (764)
Q Consensus       323 ~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  402 (764)
                      ++|.+++..   ..++|++|++++|.+++..+..   +++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus        88 s~n~l~~l~---~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           88 NNNYVQELL---VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             CSSEEEEEE---ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             cCCcccccc---CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            777766443   2356667777777666544332   4556666666666665555556666666666666666655444


Q ss_pred             Ccc--cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCC
Q 045580          403 SSF--NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLS  480 (764)
Q Consensus       403 ~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  480 (764)
                      ..+  .+++|+.|++++|.+++..+  ...+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..++
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~  237 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ  237 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred             HHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence            433  34555555555555543311  1234555555555555553 2333445555555555555555 3444444455


Q ss_pred             CCCEEeCCCCcCc
Q 045580          481 LLNILDLSYNKFN  493 (764)
Q Consensus       481 ~L~~L~Ls~n~l~  493 (764)
                      +|+.|++++|+++
T Consensus       238 ~L~~L~l~~N~~~  250 (317)
T 3o53_A          238 NLEHFDLRGNGFH  250 (317)
T ss_dssp             TCCEEECTTCCCB
T ss_pred             CCCEEEccCCCcc
Confidence            5555555555444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=1.4e-24  Score=222.67  Aligned_cols=210  Identities=22%  Similarity=0.218  Sum_probs=143.1

Q ss_pred             CCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEcc
Q 045580          386 GLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLR  464 (764)
Q Consensus       386 ~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  464 (764)
                      +|++|++++|.+++..+..+ .+++|+.|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45555555555554444333 45555555555555554445556666666666776666665555666666777777777


Q ss_pred             CCcCCccCCccccCCCCCCEEeCCCCcCcCC-cChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhcccccc
Q 045580          465 GNQLKGNIPNQLCHLSLLNILDLSYNKFNGP-IPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKH  543 (764)
Q Consensus       465 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  543 (764)
                      +|++++..+..+..+++|++|++++|.+++. +|..+.+                                         
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-----------------------------------------  147 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-----------------------------------------  147 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------------------------
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------------------------
Confidence            7776655555666777777777777777642 3544433                                         


Q ss_pred             ccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccc----eecccccccccccCccccCCCC
Q 045580          544 FYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIR----ALNLSHNFLSGSIPQSLSNLKM  619 (764)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~  619 (764)
                                               +++|+.|++++|++++..+..+..+++|+    .|++++|++++..+..+. ..+
T Consensus       148 -------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~  201 (276)
T 2z62_A          148 -------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIR  201 (276)
T ss_dssp             -------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCC
T ss_pred             -------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCc
Confidence                                     23677777777777766666777666666    788899988865555444 458


Q ss_pred             CCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCC
Q 045580          620 IESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAG  662 (764)
Q Consensus       620 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~  662 (764)
                      |+.|++++|++++..+..+..+++|+.|++++|+++|.+|...
T Consensus       202 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~  244 (276)
T 2z62_A          202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  244 (276)
T ss_dssp             EEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred             ccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence            9999999999997777778899999999999999999998653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=4.6e-26  Score=252.29  Aligned_cols=220  Identities=21%  Similarity=0.155  Sum_probs=191.6

Q ss_pred             CCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEE
Q 045580          359 KATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLD  438 (764)
Q Consensus       359 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  438 (764)
                      .+++|+.|++++|.+++..|..|..+++|++|+|++|.+++..| ...+++|+.|++++|.+++..+     .++|+.|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            34589999999999998888999999999999999999997766 3389999999999999986443     38999999


Q ss_pred             ccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccc
Q 045580          439 LRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLW  518 (764)
Q Consensus       439 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~  518 (764)
                      +++|.+++..+.   .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..                
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~----------------  166 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA----------------  166 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG----------------
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh----------------
Confidence            999999976554   4689999999999999988989999999999999999999877665531                


Q ss_pred             cccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccce
Q 045580          519 ETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRA  598 (764)
Q Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~  598 (764)
                                                                       .++.|+.|+|++|.+++. | .+..+++|+.
T Consensus       167 -------------------------------------------------~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~  195 (487)
T 3oja_A          167 -------------------------------------------------SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKT  195 (487)
T ss_dssp             -------------------------------------------------GTTTCCEEECTTSCCCEE-E-CCCCCTTCCE
T ss_pred             -------------------------------------------------hCCcccEEecCCCccccc-c-ccccCCCCCE
Confidence                                                             145899999999999976 3 2446999999


Q ss_pred             ecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCcccc
Q 045580          599 LNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSG  656 (764)
Q Consensus       599 L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  656 (764)
                      |+|++|++++ +|..++.+++|+.|||++|.+++ +|..+..+++|+.|++++|++.|
T Consensus       196 L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          196 LDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             EECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred             EECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence            9999999996 55559999999999999999996 78889999999999999999984

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=3.1e-23  Score=211.59  Aligned_cols=207  Identities=22%  Similarity=0.259  Sum_probs=155.8

Q ss_pred             CCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCC
Q 045580          387 LQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGN  466 (764)
Q Consensus       387 L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  466 (764)
                      .+.++++++.++. +|..+. ++++.|++++|.+.+..+..|..+++|++|++++|+++...+..+..+++|++|++++|
T Consensus        18 ~~~l~~~~~~l~~-ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCEEEccCCCCCc-cCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            4555555555553 332221 45666666666666555556777777777777777777554555677777888888888


Q ss_pred             cCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccc
Q 045580          467 QLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYK  546 (764)
Q Consensus       467 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  546 (764)
                      ++++..+..+..+++|++|++++|++++..|..+..                                            
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------------  131 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS--------------------------------------------  131 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT--------------------------------------------
T ss_pred             cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc--------------------------------------------
Confidence            777655666777888888888888877655544432                                            


Q ss_pred             cCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECc
Q 045580          547 ASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLS  626 (764)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs  626 (764)
                                            +++|+.|+|++|++++..+..++.+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus       132 ----------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  189 (270)
T 2o6q_A          132 ----------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD  189 (270)
T ss_dssp             ----------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ----------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence                                  3478888888888886666678899999999999999997777789999999999999


Q ss_pred             CCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580          627 HNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA  661 (764)
Q Consensus       627 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~  661 (764)
                      +|++++..+..+..+++|+.|++++|++.|.++..
T Consensus       190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  224 (270)
T 2o6q_A          190 NNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI  224 (270)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred             CCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence            99999877778999999999999999999988753

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=2.1e-23  Score=213.80  Aligned_cols=226  Identities=24%  Similarity=0.232  Sum_probs=178.4

Q ss_pred             EcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccc
Q 045580          343 YLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFN  421 (764)
Q Consensus       343 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~  421 (764)
                      +..+..+. .+|..+.  ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+ .+++|+.|++++|.++
T Consensus        13 ~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             ECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            33344444 3444332  568888888888886666678888888888888888887766666 7888888888888888


Q ss_pred             cccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCcc-CCccccCCCCCCEEeCCCCcCcCCcChhh
Q 045580          422 GSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGN-IPNQLCHLSLLNILDLSYNKFNGPIPVCF  500 (764)
Q Consensus       422 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  500 (764)
                      +..+..+.++++|++|++++|++++..+..++.+++|++|++++|++++. +|..+..+++|++|++++|++++..+..+
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  169 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  169 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence            77778888999999999999999877666788999999999999999864 58889999999999999999987655555


Q ss_pred             hcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccccccccccc-EEEccc
Q 045580          501 ANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMT-GLDFSC  579 (764)
Q Consensus       501 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~  579 (764)
                      ..+.                                                               .++.+. .|++++
T Consensus       170 ~~l~---------------------------------------------------------------~L~~l~l~L~ls~  186 (276)
T 2z62_A          170 RVLH---------------------------------------------------------------QMPLLNLSLDLSL  186 (276)
T ss_dssp             HHHH---------------------------------------------------------------TCTTCCEEEECCS
T ss_pred             hhhh---------------------------------------------------------------hccccceeeecCC
Confidence            4432                                                               012233 799999


Q ss_pred             CcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCc
Q 045580          580 NELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIP  635 (764)
Q Consensus       580 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip  635 (764)
                      |++++..+..+ ...+|+.|++++|++++..+..++.+++|+.|++++|++++..|
T Consensus       187 n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          187 NPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            99996555544 44589999999999997777778999999999999999997654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=5.6e-23  Score=211.44  Aligned_cols=207  Identities=21%  Similarity=0.208  Sum_probs=162.4

Q ss_pred             ccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccE
Q 045580          381 FGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGI  460 (764)
Q Consensus       381 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  460 (764)
                      +.+++++++++++++.++.. |..+ .+.++.|++++|.+++..+..|..+++|+.|++++|++++..+ . +.+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~i-p~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTAL-PPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSC-CSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcC-CCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCE
Confidence            44556666666666666633 3222 2567777777777777777778888888888888888875433 2 67888888


Q ss_pred             EEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccc
Q 045580          461 LLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSE  540 (764)
Q Consensus       461 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (764)
                      |++++|+++ .+|..+..+++|++|++++|++++..|..|..                                      
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~--------------------------------------  122 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG--------------------------------------  122 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence            888888888 67777888888999999999888655555543                                      


Q ss_pred             cccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCC
Q 045580          541 VKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMI  620 (764)
Q Consensus       541 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  620 (764)
                                                  +++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|
T Consensus       123 ----------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  174 (290)
T 1p9a_G          123 ----------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL  174 (290)
T ss_dssp             ----------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred             ----------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence                                        3478889999999987777778899999999999999996666677889999


Q ss_pred             CEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCC
Q 045580          621 ESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTP  659 (764)
Q Consensus       621 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p  659 (764)
                      +.|+|++|+++ .+|..+..+..|+.+++++|++.|.|.
T Consensus       175 ~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             CEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence            99999999998 688888888999999999999998764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.9e-23  Score=212.00  Aligned_cols=87  Identities=24%  Similarity=0.249  Sum_probs=34.8

Q ss_pred             CCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeC
Q 045580          408 SSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDL  487 (764)
Q Consensus       408 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  487 (764)
                      ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus       109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  188 (272)
T 3rfs_A          109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL  188 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence            33333333333333333333333444444444444444333333344444444444444444333333344444444444


Q ss_pred             CCCcCcC
Q 045580          488 SYNKFNG  494 (764)
Q Consensus       488 s~n~l~~  494 (764)
                      ++|++++
T Consensus       189 ~~N~l~~  195 (272)
T 3rfs_A          189 YQNQLKS  195 (272)
T ss_dssp             CSSCCSC
T ss_pred             CCCcCCc
Confidence            4444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=7e-23  Score=209.14  Aligned_cols=210  Identities=20%  Similarity=0.204  Sum_probs=160.3

Q ss_pred             cCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEE
Q 045580          358 SKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVL  437 (764)
Q Consensus       358 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  437 (764)
                      ..+++|+.|++++|.+.. + ..+..+++|++|++++|.+++. +....+++|++|++++|.+++..+..+..+++|++|
T Consensus        38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            345556666666665542 2 2355666666666666666642 222266777777777777776666678888999999


Q ss_pred             EccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccc
Q 045580          438 DLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVL  517 (764)
Q Consensus       438 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~  517 (764)
                      ++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..               
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------  179 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK---------------  179 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC---------------
Confidence            99999999777777888999999999999999777777888999999999999988655544433               


Q ss_pred             ccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccc
Q 045580          518 WETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIR  597 (764)
Q Consensus       518 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~  597 (764)
                                                                         +++|+.|++++|++++..|..++.+++|+
T Consensus       180 ---------------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          180 ---------------------------------------------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             ---------------------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ---------------------------------------------------CccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence                                                               34788999999999988887889999999


Q ss_pred             eecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCC
Q 045580          598 ALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNF  643 (764)
Q Consensus       598 ~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~  643 (764)
                      .|++++|.+.+.       +++|+.|+++.|.++|.+|..++.+..
T Consensus       209 ~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          209 YIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             EEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             EEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence            999999988754       446888999999999999988877654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=6.7e-22  Score=201.70  Aligned_cols=203  Identities=25%  Similarity=0.309  Sum_probs=139.3

Q ss_pred             CCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccC
Q 045580          363 LLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRD  441 (764)
Q Consensus       363 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  441 (764)
                      .+.++++++.++ .+|..+.  +++++|++++|++++..+..+ .+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            445555555554 2333332  345555555555554444444 555666666666666544445556677777777777


Q ss_pred             CcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccccccc
Q 045580          442 NQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETT  521 (764)
Q Consensus       442 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~  521 (764)
                      |++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..                   
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------------------  155 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK-------------------  155 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC-------------------
Confidence            7777555566677777777777777777666666777788888888888777544333332                   


Q ss_pred             ccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecc
Q 045580          522 QRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNL  601 (764)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~L  601 (764)
                                                                     +++|+.|++++|++++..+..+..+++|+.|+|
T Consensus       156 -----------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  188 (270)
T 2o6q_A          156 -----------------------------------------------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL  188 (270)
T ss_dssp             -----------------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             -----------------------------------------------CcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence                                                           346788888888888766677888999999999


Q ss_pred             cccccccccCccccCCCCCCEEECcCCcCcccC
Q 045580          602 SHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQI  634 (764)
Q Consensus       602 s~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~i  634 (764)
                      ++|++++..+..+..+++|+.|+|++|++....
T Consensus       189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          189 DNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             CCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            999999766677889999999999999987543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=7e-24  Score=226.24  Aligned_cols=254  Identities=22%  Similarity=0.210  Sum_probs=152.1

Q ss_pred             EEcccccCCCcccccccCCCCCCEEeCcCCccCCCcc----ccccCCC-CCCEEECcCCCCCCCCCCcc-cC-----CCc
Q 045580          342 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIP----HWFGNLS-GLQFLDISENQLSGSVPSSF-NL-----SSL  410 (764)
Q Consensus       342 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~-~~-----~~L  410 (764)
                      +.++.|.+++.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+ .+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4556666666666655555557777777776665544    5556666 67777777776665555444 22     667


Q ss_pred             cEEeccCCccccccchh----hcCC-CCCCEEEccCCcCCCcchhhhh----c-CCCccEEEccCCcCCccCC----ccc
Q 045580          411 RRLYMHMNAFNGSIPGA----LRRS-SSLTVLDLRDNQFSGSIPIWIN----E-FSYLGILLLRGNQLKGNIP----NQL  476 (764)
Q Consensus       411 ~~L~l~~n~l~~~~~~~----~~~~-~~L~~L~L~~n~l~~~~p~~~~----~-l~~L~~L~L~~n~l~~~~~----~~~  476 (764)
                      ++|++++|.+++..+..    +..+ ++|++|++++|++++..+..+.    . .++|++|++++|++++..+    ..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            77777777766555443    3333 6777777777777655554432    2 2477777777777764332    333


Q ss_pred             cCCC-CCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEE
Q 045580          477 CHLS-LLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEF  555 (764)
Q Consensus       477 ~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  555 (764)
                      ..++ +|++|++++|++++..+..+...-                                                   
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l---------------------------------------------------  191 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFL---------------------------------------------------  191 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHH---------------------------------------------------
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHH---------------------------------------------------
Confidence            4444 777777777777655544433210                                                   


Q ss_pred             eecccccccccccc-ccccEEEcccCccccc----CCccccCc-cccceecccccccccccC----ccccCCCCCCEEEC
Q 045580          556 MTKKRYESYKGDIL-NYMTGLDFSCNELTGD----IPSEIGSL-SEIRALNLSHNFLSGSIP----QSLSNLKMIESLDL  625 (764)
Q Consensus       556 ~~~~~~~~~~~~~l-~~L~~LdLs~N~l~~~----ip~~l~~l-~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~LdL  625 (764)
                                 ... ++|+.|||++|++++.    ++..+..+ ++|+.|+|++|++++..+    ..+..+++|+.|+|
T Consensus       192 -----------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L  260 (362)
T 3goz_A          192 -----------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL  260 (362)
T ss_dssp             -----------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred             -----------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence                       001 2577777777777652    44444443 467777777777765433    33455677777777


Q ss_pred             cCCcCccc-------CcccccCCCCCCeEeccCCccccC
Q 045580          626 SHNDLSGQ-------IPPQLTELNFLSNFNVSYNHLSGP  657 (764)
Q Consensus       626 s~N~l~~~-------ip~~l~~l~~L~~L~ls~N~l~g~  657 (764)
                      ++|.+.+.       ++..+..+++|+.||+++|++.+.
T Consensus       261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            77774432       233556667777777777777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=8.6e-22  Score=202.58  Aligned_cols=204  Identities=24%  Similarity=0.223  Sum_probs=173.9

Q ss_pred             cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEE
Q 045580          406 NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNIL  485 (764)
Q Consensus       406 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  485 (764)
                      .+++++.++++++.++ .+|..+  .++++.|++++|++++..+..+..+++|++|++++|++++..+.  ..+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             ccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            6788999999999998 455444  36899999999999988889999999999999999999964332  789999999


Q ss_pred             eCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccc
Q 045580          486 DLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYK  565 (764)
Q Consensus       486 ~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  565 (764)
                      ++++|+++ .+|..+..                                                               
T Consensus        83 ~Ls~N~l~-~l~~~~~~---------------------------------------------------------------   98 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQT---------------------------------------------------------------   98 (290)
T ss_dssp             ECCSSCCS-SCCCCTTT---------------------------------------------------------------
T ss_pred             ECCCCcCC-cCchhhcc---------------------------------------------------------------
Confidence            99999997 44543322                                                               


Q ss_pred             ccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCC
Q 045580          566 GDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLS  645 (764)
Q Consensus       566 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~  645 (764)
                         +++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+
T Consensus        99 ---l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~  175 (290)
T 1p9a_G           99 ---LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD  175 (290)
T ss_dssp             ---CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred             ---CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence               45799999999999987788999999999999999999987778889999999999999999977777789999999


Q ss_pred             eEeccCCccccCCCCCCCCCCCCccccCCCCCCCCC
Q 045580          646 NFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGP  681 (764)
Q Consensus       646 ~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~  681 (764)
                      +|++++|+++...+.......+....+.|||+.|..
T Consensus       176 ~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             EEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             EEECCCCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence            999999999954333355556777888999999863

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=3.5e-24  Score=230.93  Aligned_cols=240  Identities=18%  Similarity=0.232  Sum_probs=158.8

Q ss_pred             cccccCCCCCCEEeCcCCccCCCcc----ccccCCCCCCEEECcCCCC---CCCCCCcc--------cCCCccEEeccCC
Q 045580          354 QDGLSKATSLLELDLSNNMLYGQIP----HWFGNLSGLQFLDISENQL---SGSVPSSF--------NLSSLRRLYMHMN  418 (764)
Q Consensus       354 ~~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l---~~~~~~~~--------~~~~L~~L~l~~n  418 (764)
                      +..+..+++|++|++++|.+++..+    ..+..+++|++|++++|.+   ++.+|..+        .+++|++|++++|
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            3444555666666666666554322    2344566666666666432   22333221        4566677777777


Q ss_pred             cccc----ccchhhcCCCCCCEEEccCCcCCCcchhhh----hcC---------CCccEEEccCCcCC-ccCC---cccc
Q 045580          419 AFNG----SIPGALRRSSSLTVLDLRDNQFSGSIPIWI----NEF---------SYLGILLLRGNQLK-GNIP---NQLC  477 (764)
Q Consensus       419 ~l~~----~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~----~~l---------~~L~~L~L~~n~l~-~~~~---~~~~  477 (764)
                      .+.+    .++..+..+++|+.|+|++|.+++..+..+    ..+         ++|++|++++|+++ +.++   ..+.
T Consensus       105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence            6665    356667777788888888887764433333    333         78888888888876 3333   3566


Q ss_pred             CCCCCCEEeCCCCcCcCC-----cChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccc
Q 045580          478 HLSLLNILDLSYNKFNGP-----IPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRG  552 (764)
Q Consensus       478 ~l~~L~~L~Ls~n~l~~~-----~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  552 (764)
                      .+++|+.|++++|+++..     +|..+                                                    
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l----------------------------------------------------  212 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGL----------------------------------------------------  212 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTG----------------------------------------------------
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHh----------------------------------------------------
Confidence            677888888888877521     00011                                                    


Q ss_pred             eEEeeccccccccccccccccEEEcccCccc----ccCCccccCccccceecccccccccc----cCcccc--CCCCCCE
Q 045580          553 IEFMTKKRYESYKGDILNYMTGLDFSCNELT----GDIPSEIGSLSEIRALNLSHNFLSGS----IPQSLS--NLKMIES  622 (764)
Q Consensus       553 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~--~l~~L~~  622 (764)
                                    ..+++|+.|+|++|.++    +.+|..+..+++|+.|+|++|++++.    +|..+.  .+++|+.
T Consensus       213 --------------~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~  278 (386)
T 2ca6_A          213 --------------AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT  278 (386)
T ss_dssp             --------------GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred             --------------hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEE
Confidence                          11457888888888885    56778888888888888888888866    566663  3888899


Q ss_pred             EECcCCcCcc----cCcccc-cCCCCCCeEeccCCccccCCC
Q 045580          623 LDLSHNDLSG----QIPPQL-TELNFLSNFNVSYNHLSGPTP  659 (764)
Q Consensus       623 LdLs~N~l~~----~ip~~l-~~l~~L~~L~ls~N~l~g~~p  659 (764)
                      |+|++|.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       279 L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             EECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            9999998887    477777 558888999999998887664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.6e-21  Score=196.56  Aligned_cols=184  Identities=19%  Similarity=0.211  Sum_probs=146.0

Q ss_pred             CccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCC
Q 045580          409 SLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLS  488 (764)
Q Consensus       409 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  488 (764)
                      ..+.++++++.++ .+|..+.  ++++.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4556666666665 3443332  577888888888887777777888888888888888887777777888888888888


Q ss_pred             CCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccc
Q 045580          489 YNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDI  568 (764)
Q Consensus       489 ~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (764)
                      +|++++..+..+..                                                                  
T Consensus        92 ~n~l~~~~~~~~~~------------------------------------------------------------------  105 (251)
T 3m19_A           92 NNQLASLPLGVFDH------------------------------------------------------------------  105 (251)
T ss_dssp             TSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred             CCcccccChhHhcc------------------------------------------------------------------
Confidence            88887555444432                                                                  


Q ss_pred             cccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEe
Q 045580          569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFN  648 (764)
Q Consensus       569 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  648 (764)
                      +++|+.|+|++|++++..+..++.+++|+.|+|++|++++..+..++.+++|+.|+|++|++++..|..+..+++|++|+
T Consensus       106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  185 (251)
T 3m19_A          106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT  185 (251)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence            34788888999988876677788999999999999999977777899999999999999999988888899999999999


Q ss_pred             ccCCccccCCCCC
Q 045580          649 VSYNHLSGPTPNA  661 (764)
Q Consensus       649 ls~N~l~g~~p~~  661 (764)
                      +++|+++|.++..
T Consensus       186 l~~N~~~c~~~~~  198 (251)
T 3m19_A          186 LFGNQFDCSRCEI  198 (251)
T ss_dssp             CCSCCBCTTSTTH
T ss_pred             eeCCceeCCcccc
Confidence            9999999875543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=5.1e-23  Score=217.56  Aligned_cols=250  Identities=17%  Similarity=0.205  Sum_probs=183.0

Q ss_pred             CCceEEcccccCCCcccccccCC--CCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCC-CCCcc-cCCCccEE
Q 045580          338 NLCWLYLNNNHFSGKIQDGLSKA--TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGS-VPSSF-NLSSLRRL  413 (764)
Q Consensus       338 ~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~-~~~~L~~L  413 (764)
                      .++.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+ .+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            3566666666654   3344455  6777888888877765554 45677888888888877654 44444 67788888


Q ss_pred             eccCCccccccchhhcCCCCCCEEEccCC-cCCCc-chhhhhcCCCccEEEccCC-cCCcc-CCccccCCC-CCCEEeCC
Q 045580          414 YMHMNAFNGSIPGALRRSSSLTVLDLRDN-QFSGS-IPIWINEFSYLGILLLRGN-QLKGN-IPNQLCHLS-LLNILDLS  488 (764)
Q Consensus       414 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~Ls  488 (764)
                      ++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            88888887777778888899999999998 67753 6677888899999999999 88754 566677888 99999999


Q ss_pred             CCc--Cc-CCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccc
Q 045580          489 YNK--FN-GPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYK  565 (764)
Q Consensus       489 ~n~--l~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  565 (764)
                      +|.  ++ +.+|..+.                                                                
T Consensus       204 ~~~~~~~~~~l~~~~~----------------------------------------------------------------  219 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVR----------------------------------------------------------------  219 (336)
T ss_dssp             SCGGGSCHHHHHHHHH----------------------------------------------------------------
T ss_pred             CCcccCCHHHHHHHHh----------------------------------------------------------------
Confidence            984  43 22222221                                                                


Q ss_pred             ccccccccEEEcccCc-ccccCCccccCccccceecccccc-cccccCccccCCCCCCEEECcCCcCcccCcccccCC-C
Q 045580          566 GDILNYMTGLDFSCNE-LTGDIPSEIGSLSEIRALNLSHNF-LSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTEL-N  642 (764)
Q Consensus       566 ~~~l~~L~~LdLs~N~-l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l-~  642 (764)
                        .+++|+.|++++|. +++..+..++.+++|+.|++++|. ++......++++++|+.|++++| ++.   ..+..+ .
T Consensus       220 --~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~  293 (336)
T 2ast_B          220 --RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKE  293 (336)
T ss_dssp             --HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHH
T ss_pred             --hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHh
Confidence              14578999999998 777888889999999999999995 43333336888999999999999 442   233444 3


Q ss_pred             CCCeEeccCCccccCCCCC
Q 045580          643 FLSNFNVSYNHLSGPTPNA  661 (764)
Q Consensus       643 ~L~~L~ls~N~l~g~~p~~  661 (764)
                      .+..|++++|++++..|..
T Consensus       294 ~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          294 ALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             HSTTSEESCCCSCCTTCSS
T ss_pred             hCcceEEecccCccccCCc
Confidence            4777889999999988754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=2.7e-22  Score=209.06  Aligned_cols=204  Identities=21%  Similarity=0.197  Sum_probs=140.2

Q ss_pred             CCCCEEECcCCCCCCCCCCcc---cCCCccEEeccCCccccccc----hhhcCCCCCCEEEccCCcCCCcchhhhhcCCC
Q 045580          385 SGLQFLDISENQLSGSVPSSF---NLSSLRRLYMHMNAFNGSIP----GALRRSSSLTVLDLRDNQFSGSIPIWINEFSY  457 (764)
Q Consensus       385 ~~L~~L~L~~n~l~~~~~~~~---~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~  457 (764)
                      ++|++|++++|.+++..|..+   .+++|++|++++|.+.+..+    ..+..+++|++|++++|++++..+..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            335555555555544444432   34455555555555544332    23446777888888888887777777777888


Q ss_pred             ccEEEccCCcCCcc--C--CccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhh
Q 045580          458 LGILLLRGNQLKGN--I--PNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYN  533 (764)
Q Consensus       458 L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (764)
                      |++|++++|++.+.  +  +..+..+++|++|++++|+++. +|.....+.                             
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~-----------------------------  220 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALA-----------------------------  220 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHH-----------------------------
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHH-----------------------------
Confidence            88888888877642  2  2234677889999999988852 221100000                             


Q ss_pred             hhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCc---cccceeccccccccccc
Q 045580          534 STLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSL---SEIRALNLSHNFLSGSI  610 (764)
Q Consensus       534 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~~  610 (764)
                                                       ..+++|++|||++|++++.+|..++.+   ++|+.|+|++|+++ .+
T Consensus       221 ---------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~l  266 (310)
T 4glp_A          221 ---------------------------------AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QV  266 (310)
T ss_dssp             ---------------------------------HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SC
T ss_pred             ---------------------------------hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-ch
Confidence                                             114578889999999998878888777   69999999999999 67


Q ss_pred             CccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCcccc
Q 045580          611 PQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSG  656 (764)
Q Consensus       611 p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  656 (764)
                      |..+.  ++|+.|||++|++++. |. +..+++|+.|++++|+++.
T Consensus       267 p~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          267 PKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             hhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            87775  7999999999999964 43 6788999999999999874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=7.4e-23  Score=218.29  Aligned_cols=42  Identities=5%  Similarity=0.036  Sum_probs=21.6

Q ss_pred             cccEEEcccCccccc-------CCccccCccccceecccccccccccCc
Q 045580          571 YMTGLDFSCNELTGD-------IPSEIGSLSEIRALNLSHNFLSGSIPQ  612 (764)
Q Consensus       571 ~L~~LdLs~N~l~~~-------ip~~l~~l~~L~~L~Ls~N~l~~~~p~  612 (764)
                      .|+.|+|++|.+.+.       ++..+..+++|+.||+++|++.+..+.
T Consensus       254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~  302 (362)
T 3goz_A          254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI  302 (362)
T ss_dssp             TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred             CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence            455555555553221       233445555666666666666554443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.9e-23  Score=225.19  Aligned_cols=247  Identities=16%  Similarity=0.184  Sum_probs=149.3

Q ss_pred             cCchhhhhCCCCCCEEEeeccccccee------ecCCCCCCceEEcccccC---CCcccccccCCCCCCEEeCcCCccCC
Q 045580          305 ELPRQFLSGCFSLSFLSLSDNHLQGEV------VFPNSTNLCWLYLNNNHF---SGKIQDGLSKATSLLELDLSNNMLYG  375 (764)
Q Consensus       305 ~~p~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~L~~n~l---~~~~~~~l~~l~~L~~L~L~~n~l~~  375 (764)
                      .++..+ ..+++|+.|++++|.+++..      .+..+++|++|++++|.+   ++.+|..+.                 
T Consensus        23 ~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~-----------------   84 (386)
T 2ca6_A           23 SVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR-----------------   84 (386)
T ss_dssp             TTSHHH-HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH-----------------
T ss_pred             HHHHHH-hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH-----------------
Confidence            344433 45666777777766665432      244555555555555432   222232220                 


Q ss_pred             CccccccCCCCCCEEECcCCCCCCC----CCCcc-cCCCccEEeccCCccccccchh----hcCC---------CCCCEE
Q 045580          376 QIPHWFGNLSGLQFLDISENQLSGS----VPSSF-NLSSLRRLYMHMNAFNGSIPGA----LRRS---------SSLTVL  437 (764)
Q Consensus       376 ~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~-~~~~L~~L~l~~n~l~~~~~~~----~~~~---------~~L~~L  437 (764)
                      .+...+..+++|++|+|++|.+++.    ++..+ .+++|+.|++++|.+.+..+..    +..+         ++|++|
T Consensus        85 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L  164 (386)
T 2ca6_A           85 LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI  164 (386)
T ss_dssp             HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             HHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence            0001123445555555555554431    22222 4455555555555554322222    2222         678888


Q ss_pred             EccCCcCC-Ccch---hhhhcCCCccEEEccCCcCCc-----cCCccccCCCCCCEEeCCCCcCc----CCcChhhhcch
Q 045580          438 DLRDNQFS-GSIP---IWINEFSYLGILLLRGNQLKG-----NIPNQLCHLSLLNILDLSYNKFN----GPIPVCFANVT  504 (764)
Q Consensus       438 ~L~~n~l~-~~~p---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~  504 (764)
                      ++++|+++ +.++   ..+..+++|++|++++|+++.     ..+..+..+++|+.|+|++|.++    +.+|..+..  
T Consensus       165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~--  242 (386)
T 2ca6_A          165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS--  242 (386)
T ss_dssp             ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG--
T ss_pred             ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc--
Confidence            88888876 3344   456677888888888888772     23436777888888888888875    222322221  


Q ss_pred             hhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccc
Q 045580          505 LWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTG  584 (764)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~  584 (764)
                                                                                      +++|+.|+|++|++++
T Consensus       243 ----------------------------------------------------------------~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          243 ----------------------------------------------------------------WPNLRELGLNDCLLSA  258 (386)
T ss_dssp             ----------------------------------------------------------------CTTCCEEECTTCCCCH
T ss_pred             ----------------------------------------------------------------CCCcCEEECCCCCCch
Confidence                                                                            3468888888888876


Q ss_pred             c----CCccc--cCccccceeccccccccc----ccCccc-cCCCCCCEEECcCCcCcccCc
Q 045580          585 D----IPSEI--GSLSEIRALNLSHNFLSG----SIPQSL-SNLKMIESLDLSHNDLSGQIP  635 (764)
Q Consensus       585 ~----ip~~l--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~LdLs~N~l~~~ip  635 (764)
                      .    +|..+  +.+++|+.|+|++|.+++    .+|..+ .++++|+.|++++|++++..|
T Consensus       259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            5    56666  448899999999999997    488777 668999999999999997764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=204.27  Aligned_cols=157  Identities=23%  Similarity=0.260  Sum_probs=97.4

Q ss_pred             CCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCc--ch--hhhhcCCCccEEEccCCcCCccCCc----cccC
Q 045580          407 LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGS--IP--IWINEFSYLGILLLRGNQLKGNIPN----QLCH  478 (764)
Q Consensus       407 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~p--~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~  478 (764)
                      +++|++|++++|.+.+..+..+..+++|++|++++|++.+.  ++  ..+..+++|++|++++|+++. ++.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence            44555555555555544555555566666666666665432  11  223456666666666666652 222    2355


Q ss_pred             CCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeec
Q 045580          479 LSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTK  558 (764)
Q Consensus       479 l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  558 (764)
                      +++|++||+++|++++..|..+..+.                                                      
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~------------------------------------------------------  248 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCM------------------------------------------------------  248 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCC------------------------------------------------------
T ss_pred             CCCCCEEECCCCCCCccchhhHHhcc------------------------------------------------------
Confidence            67777777777777766554443221                                                      


Q ss_pred             cccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcc
Q 045580          559 KRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG  632 (764)
Q Consensus       559 ~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~  632 (764)
                               .+++|+.|+|++|+++ .+|..+.  ++|+.|+|++|++++. |. +..+++|+.|+|++|+++.
T Consensus       249 ---------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          249 ---------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             ---------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             ---------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence                     0236777888888887 6677664  6888888888888853 43 5777888888888888874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=5.2e-21  Score=191.33  Aligned_cols=78  Identities=18%  Similarity=0.202  Sum_probs=44.4

Q ss_pred             ccc-EEEcccCcccccCCccccCccccceecccccc-cccccCccccCC-CCCCEEECcCCcCcccCcccccCCCCCCeE
Q 045580          571 YMT-GLDFSCNELTGDIPSEIGSLSEIRALNLSHNF-LSGSIPQSLSNL-KMIESLDLSHNDLSGQIPPQLTELNFLSNF  647 (764)
Q Consensus       571 ~L~-~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L  647 (764)
                      .|+ .|++++|+++ .+|......++|+.|++++|+ +++..+..++++ ++|+.||+++|++++ +|..  .+++|+.|
T Consensus       156 ~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L  231 (239)
T 2xwt_C          156 NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKEL  231 (239)
T ss_dssp             SSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEE
T ss_pred             cceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCcee
Confidence            455 5666666665 344333233566666666663 664445556666 666666666666663 3332  45566666


Q ss_pred             eccCC
Q 045580          648 NVSYN  652 (764)
Q Consensus       648 ~ls~N  652 (764)
                      +++++
T Consensus       232 ~l~~~  236 (239)
T 2xwt_C          232 IARNT  236 (239)
T ss_dssp             ECTTC
T ss_pred             eccCc
Confidence            66654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=9.8e-21  Score=196.72  Aligned_cols=192  Identities=22%  Similarity=0.309  Sum_probs=117.0

Q ss_pred             CCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEc
Q 045580          384 LSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLL  463 (764)
Q Consensus       384 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  463 (764)
                      +++|++|++++|.++. ++....+++|+.|++++|.+.+..+  +..+++|+.|++++|++++. + .+..+++|++|++
T Consensus        40 l~~L~~L~l~~~~i~~-l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred             cCCcCEEEeeCCCccC-chhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence            3444444444444442 2221244455555555555543332  55666666666666666532 2 4566666666666


Q ss_pred             cCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhcccccc
Q 045580          464 RGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKH  543 (764)
Q Consensus       464 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  543 (764)
                      ++|++++ ++. +..+++|+.|++++|.+++..+  +..                                         
T Consensus       115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~-----------------------------------------  149 (308)
T 1h6u_A          115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAG-----------------------------------------  149 (308)
T ss_dssp             TTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGG-----------------------------------------
T ss_pred             CCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccC-----------------------------------------
Confidence            6666664 232 6666777777777776654322  111                                         


Q ss_pred             ccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEE
Q 045580          544 FYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESL  623 (764)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  623 (764)
                                               +++|+.|++++|++++. +. +..+++|+.|++++|++++..+  +..+++|+.|
T Consensus       150 -------------------------l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L  200 (308)
T 1h6u_A          150 -------------------------LTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEV  200 (308)
T ss_dssp             -------------------------CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred             -------------------------CCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEE
Confidence                                     34677777777777743 33 7777778888888887775443  6777888888


Q ss_pred             ECcCCcCcccCcccccCCCCCCeEeccCCcccc
Q 045580          624 DLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSG  656 (764)
Q Consensus       624 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  656 (764)
                      ++++|++++..|  +..+++|+.|++++|++++
T Consensus       201 ~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          201 HLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             ECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             EccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            888888875443  6777888888888888766

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=1e-21  Score=207.45  Aligned_cols=195  Identities=19%  Similarity=0.218  Sum_probs=84.4

Q ss_pred             CCEEECCCCcccccCchhhhhCC--CCCCEEEeeccccccee-ecCCCCCCceEEcccccCCCc-ccccccCCCCCCEEe
Q 045580          292 LESLDLSSNNFSGELPRQFLSGC--FSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGK-IQDGLSKATSLLELD  367 (764)
Q Consensus       292 L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~  367 (764)
                      ++.++++++.+.   + ..+..+  +.++.|++++|.+.+.. .+..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~-~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---P-DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---H-HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---H-HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            455555555443   1 112222  44444544444444322 223344455555555544433 444445555555555


Q ss_pred             CcCCccCCCccccccCCCCCCEEECcCC-CCCCC-CCCcc-cCCCccEEeccCC-ccccc-cchhhcCCC-CCCEEEccC
Q 045580          368 LSNNMLYGQIPHWFGNLSGLQFLDISEN-QLSGS-VPSSF-NLSSLRRLYMHMN-AFNGS-IPGALRRSS-SLTVLDLRD  441 (764)
Q Consensus       368 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~-~~~~L~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L~L~~  441 (764)
                      +++|.+++..+..+..+++|++|++++| .+++. ++..+ .+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            5555554444445555555555555555 33321 22212 3344444444444 33322 233334444 444444444


Q ss_pred             C--cCC-CcchhhhhcCCCccEEEccCCc-CCccCCccccCCCCCCEEeCCCC
Q 045580          442 N--QFS-GSIPIWINEFSYLGILLLRGNQ-LKGNIPNQLCHLSLLNILDLSYN  490 (764)
Q Consensus       442 n--~l~-~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n  490 (764)
                      |  .++ +.+|..+..+++|++|++++|. +++..+..+..+++|+.|++++|
T Consensus       205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            4  222 2233333444444444444444 33333334444444444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=5.9e-21  Score=190.94  Aligned_cols=197  Identities=21%  Similarity=0.200  Sum_probs=158.0

Q ss_pred             CCCCEEeCcCCccCCCccccccCCCCCCEEECcCCC-CCCCCCCcc-cCCCccEEeccC-CccccccchhhcCCCCCCEE
Q 045580          361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQ-LSGSVPSSF-NLSSLRRLYMHM-NAFNGSIPGALRRSSSLTVL  437 (764)
Q Consensus       361 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L  437 (764)
                      ++|++|++++|.+++..+..|.++++|++|++++|+ +++..+..+ .+++|++|++++ |.+++..+..|.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            378888888888886666678888888888888886 776666566 788888888887 88887667788889999999


Q ss_pred             EccCCcCCCcchhhhhcCCCcc---EEEccCC-cCCccCCccccCCCCCC-EEeCCCCcCcCCcChhhhcchhhcccccC
Q 045580          438 DLRDNQFSGSIPIWINEFSYLG---ILLLRGN-QLKGNIPNQLCHLSLLN-ILDLSYNKFNGPIPVCFANVTLWTLGQAA  512 (764)
Q Consensus       438 ~L~~n~l~~~~p~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~  512 (764)
                      ++++|++++ +|. +..+++|+   +|++++| ++++..+..|..+++|+ .|++++|+++ .+|.....          
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~----------  177 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN----------  177 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT----------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcC----------
Confidence            999999885 665 77888888   9999999 88876677788999999 9999999987 44432111          


Q ss_pred             CccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCc-ccccCCcccc
Q 045580          513 GSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNE-LTGDIPSEIG  591 (764)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~~~ip~~l~  591 (764)
                                                                              .++|+.|++++|+ +++..+..+.
T Consensus       178 --------------------------------------------------------~~~L~~L~L~~n~~l~~i~~~~~~  201 (239)
T 2xwt_C          178 --------------------------------------------------------GTKLDAVYLNKNKYLTVIDKDAFG  201 (239)
T ss_dssp             --------------------------------------------------------TCEEEEEECTTCTTCCEECTTTTT
T ss_pred             --------------------------------------------------------CCCCCEEEcCCCCCcccCCHHHhh
Confidence                                                                    1368899999995 9877778899


Q ss_pred             Cc-cccceecccccccccccCccccCCCCCCEEECcCCc
Q 045580          592 SL-SEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHND  629 (764)
Q Consensus       592 ~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~  629 (764)
                      .+ ++|+.|++++|++++ +|..  .+++|+.|+++++.
T Consensus       202 ~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          202 GVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             ccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence            99 999999999999994 5544  67899999998864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.4e-20  Score=187.85  Aligned_cols=180  Identities=23%  Similarity=0.272  Sum_probs=137.3

Q ss_pred             CCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccC
Q 045580          386 GLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRG  465 (764)
Q Consensus       386 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  465 (764)
                      +.++++++++.++. +|..+. +.++.|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~-~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-VPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSS-CCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccc-cCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            34555666655553 232221 4566777777777666666777778888888888888877777778888888888888


Q ss_pred             CcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhcccccccc
Q 045580          466 NQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFY  545 (764)
Q Consensus       466 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  545 (764)
                      |++++..+..+..+++|++|++++|++++..+..+..                                           
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-------------------------------------------  129 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR-------------------------------------------  129 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc-------------------------------------------
Confidence            8888666677788888888888888887554443332                                           


Q ss_pred             ccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEEC
Q 045580          546 KASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDL  625 (764)
Q Consensus       546 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdL  625 (764)
                                             +++|+.|+|++|++++..+..++.+++|+.|+|++|++++..+..+..+++|+.|+|
T Consensus       130 -----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  186 (251)
T 3m19_A          130 -----------------------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL  186 (251)
T ss_dssp             -----------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             -----------------------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence                                   347888999999998777778999999999999999999888888999999999999


Q ss_pred             cCCcCccc
Q 045580          626 SHNDLSGQ  633 (764)
Q Consensus       626 s~N~l~~~  633 (764)
                      ++|++++.
T Consensus       187 ~~N~~~c~  194 (251)
T 3m19_A          187 FGNQFDCS  194 (251)
T ss_dssp             CSCCBCTT
T ss_pred             eCCceeCC
Confidence            99999876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.9e-20  Score=194.47  Aligned_cols=161  Identities=22%  Similarity=0.283  Sum_probs=103.1

Q ss_pred             ecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCC
Q 045580          323 SDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVP  402 (764)
Q Consensus       323 ~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  402 (764)
                      ..+.+.+......+++|+.|++++|.++.. + .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++. +
T Consensus        27 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~  101 (308)
T 1h6u_A           27 GKSNVTDTVTQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S  101 (308)
T ss_dssp             TCSSTTSEECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G
T ss_pred             CCCCcCceecHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h
Confidence            334444444444556677777777766642 3 46677777777777777765433  77777777777777777643 3


Q ss_pred             CcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCC
Q 045580          403 SSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLL  482 (764)
Q Consensus       403 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  482 (764)
                      ....+++|+.|++++|.+++. + .+..+++|+.|++++|++++..+  +..+++|++|++++|++++. +. +..+++|
T Consensus       102 ~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L  175 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKL  175 (308)
T ss_dssp             GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTC
T ss_pred             hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCC
Confidence            222666777777777776643 2 26667777777777777764433  66677777777777777643 22 6667777


Q ss_pred             CEEeCCCCcCcC
Q 045580          483 NILDLSYNKFNG  494 (764)
Q Consensus       483 ~~L~Ls~n~l~~  494 (764)
                      +.|++++|++++
T Consensus       176 ~~L~l~~n~l~~  187 (308)
T 1h6u_A          176 TTLKADDNKISD  187 (308)
T ss_dssp             CEEECCSSCCCC
T ss_pred             CEEECCCCccCc
Confidence            777777776654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.9e-19  Score=190.74  Aligned_cols=239  Identities=19%  Similarity=0.185  Sum_probs=187.5

Q ss_pred             cEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCE-EEe
Q 045580          244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSF-LSL  322 (764)
Q Consensus       244 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~-L~l  322 (764)
                      +.++.++++++ ++|..+   .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+|...|.++++++. +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            46777888887 888765   4689999999999986556689999999999999999877788877788888775 556


Q ss_pred             eccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcC-CccCCCccccccCCC-CCCEEECcCCCCC
Q 045580          323 SDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSN-NMLYGQIPHWFGNLS-GLQFLDISENQLS  398 (764)
Q Consensus       323 ~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~  398 (764)
                      ..|+++...  .+..+++|++|++++|.++...+..+....++..+++.+ +.+....+..|..+. .++.|++++|+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            678888764  688899999999999999877777777778888899866 566655555676664 6889999999999


Q ss_pred             CCCCCcccCCCccEEeccC-CccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCcccc
Q 045580          399 GSVPSSFNLSSLRRLYMHM-NAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLC  477 (764)
Q Consensus       399 ~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~  477 (764)
                      ...+..+...+|+.+++.+ |.++...+..|.++++|++||+++|+++. +|.  ..+.+|+.|.+.++.-...+| .+.
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP-~l~  243 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLP-TLE  243 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCC-CTT
T ss_pred             CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCC-Cch
Confidence            7777777778899999986 56664445678999999999999999994 443  234566666665554444666 478


Q ss_pred             CCCCCCEEeCCCC
Q 045580          478 HLSLLNILDLSYN  490 (764)
Q Consensus       478 ~l~~L~~L~Ls~n  490 (764)
                      .+++|+.++++++
T Consensus       244 ~l~~L~~l~l~~~  256 (350)
T 4ay9_X          244 KLVALMEASLTYP  256 (350)
T ss_dssp             TCCSCCEEECSCH
T ss_pred             hCcChhhCcCCCC
Confidence            8999999999765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=3.5e-19  Score=173.89  Aligned_cols=131  Identities=26%  Similarity=0.238  Sum_probs=59.0

Q ss_pred             CCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEc
Q 045580          361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDL  439 (764)
Q Consensus       361 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  439 (764)
                      ++|++|++++|.+++..+..|..+++|++|++++|++++..+..+ .+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            355555555555554444445555555555555555554333333 3444444444444444333333444444444444


Q ss_pred             cCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCc
Q 045580          440 RDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK  491 (764)
Q Consensus       440 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  491 (764)
                      ++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence            4444443333333444444444444444443333333334444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=3.6e-20  Score=182.18  Aligned_cols=158  Identities=21%  Similarity=0.226  Sum_probs=127.2

Q ss_pred             CEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCC-ccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCC
Q 045580          435 TVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIP-NQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAG  513 (764)
Q Consensus       435 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~  513 (764)
                      +.+++++|.++ .+|..+.  +.+++|++++|++++..+ ..+..+++|+.|++++|++++..|..|..           
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-----------   79 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-----------   79 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence            46777777776 3554432  346777788887776544 34677888888888888887655544443           


Q ss_pred             ccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCc
Q 045580          514 SFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSL  593 (764)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l  593 (764)
                                                                             +++|+.|+|++|++++..|..|+.+
T Consensus        80 -------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l  104 (220)
T 2v70_A           80 -------------------------------------------------------ASGVNEILLTSNRLENVQHKMFKGL  104 (220)
T ss_dssp             -------------------------------------------------------CTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred             -------------------------------------------------------CCCCCEEECCCCccCccCHhHhcCC
Confidence                                                                   3478888888888887777889999


Q ss_pred             cccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580          594 SEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA  661 (764)
Q Consensus       594 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~  661 (764)
                      ++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..|..+++|+.|++++|++.|.++..
T Consensus       105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  172 (220)
T 2v70_A          105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA  172 (220)
T ss_dssp             SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred             cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence            99999999999999888999999999999999999999988999999999999999999999988854

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=3.8e-19  Score=188.44  Aligned_cols=239  Identities=18%  Similarity=0.163  Sum_probs=147.8

Q ss_pred             ceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCC-cc-cCCCccE-Eecc
Q 045580          340 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPS-SF-NLSSLRR-LYMH  416 (764)
Q Consensus       340 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~-~~~~L~~-L~l~  416 (764)
                      ++++.+++.++ .+|..+  .+++++|+|++|+++...+..|.++++|++|+|++|++.+.++. .| +++++++ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            34555556665 344433  24677777777777644445677777777777777776655443 34 5666554 4555


Q ss_pred             CCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccC-CcCCccCCccccCCC-CCCEEeCCCCcCcC
Q 045580          417 MNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRG-NQLKGNIPNQLCHLS-LLNILDLSYNKFNG  494 (764)
Q Consensus       417 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~  494 (764)
                      .|+++...|..|..+++|+.|++++|++++..+..+....++..+++.+ +++....+..+..+. .++.|++++|+++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            6777766677777777788888888777755555555556677777755 455544444555553 57778888887763


Q ss_pred             CcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccE
Q 045580          495 PIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTG  574 (764)
Q Consensus       495 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  574 (764)
                      ..+..+.                                                                   ..+++.
T Consensus       169 i~~~~f~-------------------------------------------------------------------~~~L~~  181 (350)
T 4ay9_X          169 IHNSAFN-------------------------------------------------------------------GTQLDE  181 (350)
T ss_dssp             ECTTSST-------------------------------------------------------------------TEEEEE
T ss_pred             CChhhcc-------------------------------------------------------------------ccchhH
Confidence            2222211                                                                   124667


Q ss_pred             EEccc-CcccccCC-ccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCC
Q 045580          575 LDFSC-NELTGDIP-SEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYN  652 (764)
Q Consensus       575 LdLs~-N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  652 (764)
                      |++++ |.++ .+| ..|+.+++|+.|+|++|+|+...+..   +.+|+.|.+.++.--..+| .+..+++|+.++++++
T Consensus       182 l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          182 LNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             EECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             HhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            77764 4555 444 45678888888888888887433333   3455555554444334566 3677788888888765


Q ss_pred             c
Q 045580          653 H  653 (764)
Q Consensus       653 ~  653 (764)
                      .
T Consensus       257 ~  257 (350)
T 4ay9_X          257 S  257 (350)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=2.4e-19  Score=199.80  Aligned_cols=134  Identities=29%  Similarity=0.442  Sum_probs=68.3

Q ss_pred             CCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccC
Q 045580          338 NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHM  417 (764)
Q Consensus       338 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~  417 (764)
                      +++.|++++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +. .+|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECCC
Confidence            56666666666664 34333  255666666666665 344   334566666666666654 333 21 1555555555


Q ss_pred             CccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCc
Q 045580          418 NAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFN  493 (764)
Q Consensus       418 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  493 (764)
                      |.+++ +|.   .+++|+.|++++|++++ +|.   .+++|++|++++|++++ +|. +.  ++|+.|++++|+++
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            55554 332   34555555555555553 332   33455555555555543 333 32  44555555555444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=2.9e-19  Score=199.05  Aligned_cols=189  Identities=26%  Similarity=0.343  Sum_probs=146.7

Q ss_pred             CCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccC
Q 045580          362 SLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRD  441 (764)
Q Consensus       362 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  441 (764)
                      +|+.|++++|.+++ +|..+  .++|++|++++|.++ .+|  -.+++|+.|++++|.+++ +|. +..  +|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence            89999999999986 66655  378999999999988 455  346888999999998886 665 554  889999999


Q ss_pred             CcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccccccc
Q 045580          442 NQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETT  521 (764)
Q Consensus       442 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~  521 (764)
                      |++++ +|.   .+++|+.|++++|++++ +|.   .+++|+.|++++|++++ +|. +.                    
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--------------------  179 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--------------------  179 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--------------------
T ss_pred             CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--------------------
Confidence            98886 565   67888999999998885 555   46788889998888875 443 21                    


Q ss_pred             ccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCcccc-----
Q 045580          522 QRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEI-----  596 (764)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L-----  596 (764)
                                                                      ++|+.|+|++|+|+ .+|. +..  +|     
T Consensus       180 ------------------------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~  207 (571)
T 3cvr_A          180 ------------------------------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEE  207 (571)
T ss_dssp             ------------------------------------------------TTCCEEECCSSCCS-SCCC-CC----------
T ss_pred             ------------------------------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccc
Confidence                                                            26788888888888 6776 654  67     


Q ss_pred             --ceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCC
Q 045580          597 --RALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNF  643 (764)
Q Consensus       597 --~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~  643 (764)
                        +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+..
T Consensus       208 ~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          208 TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             cceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence              88888888888 67888888888888888888888888887776543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=7.5e-19  Score=171.52  Aligned_cols=128  Identities=24%  Similarity=0.284  Sum_probs=70.2

Q ss_pred             CEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCC
Q 045580          364 LELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDN  442 (764)
Q Consensus       364 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  442 (764)
                      +.++.+++.++ .+|..+  .++|++|++++|.+++..+..+ .+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            34555555555 333332  3466666666666665544444 5566666666666665444444555556666666666


Q ss_pred             cCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC
Q 045580          443 QFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG  494 (764)
Q Consensus       443 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  494 (764)
                      ++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence            5554444445555555555555555554444445555555555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=1e-19  Score=178.88  Aligned_cols=158  Identities=20%  Similarity=0.225  Sum_probs=123.3

Q ss_pred             CEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCc
Q 045580          435 TVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGS  514 (764)
Q Consensus       435 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~  514 (764)
                      +.++++++.++ .+|..+.  ++|+.|++++|++++..+..|..+++|+.|++++|++++..|..|.+            
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------   78 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------   78 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence            45666666666 4454333  56777777777777666667777778888888888777655555543            


Q ss_pred             cccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCcc
Q 045580          515 FVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLS  594 (764)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~  594 (764)
                                                                            +++|+.|+|++|++++..+..|..++
T Consensus        79 ------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~  104 (220)
T 2v9t_B           79 ------------------------------------------------------LRSLNSLVLYGNKITELPKSLFEGLF  104 (220)
T ss_dssp             ------------------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ------------------------------------------------------CcCCCEEECCCCcCCccCHhHccCCC
Confidence                                                                  33678888888888865556678899


Q ss_pred             ccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580          595 EIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA  661 (764)
Q Consensus       595 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~  661 (764)
                      +|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+++|++|++++|++.|.++-.
T Consensus       105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~  171 (220)
T 2v9t_B          105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK  171 (220)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence            9999999999999888899999999999999999999888888999999999999999999877643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=2.4e-18  Score=170.35  Aligned_cols=158  Identities=24%  Similarity=0.259  Sum_probs=121.3

Q ss_pred             CCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCC
Q 045580          434 LTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAG  513 (764)
Q Consensus       434 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~  513 (764)
                      -+.++.++++++ .+|..+.  ++|++|++++|++++..|..+..+++|++|++++|++++..+..+..           
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~-----------   86 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS-----------   86 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence            345666666665 4444332  66777777777777666777777777777777777775433333322           


Q ss_pred             ccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCc
Q 045580          514 SFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSL  593 (764)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l  593 (764)
                                                                             +++|+.|+|++|++++..+..+..+
T Consensus        87 -------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l  111 (229)
T 3e6j_A           87 -------------------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRL  111 (229)
T ss_dssp             -------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             -------------------------------------------------------CCCcCEEECCCCcCCccChhHhCcc
Confidence                                                                   3467888888888886666778889


Q ss_pred             cccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580          594 SEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA  661 (764)
Q Consensus       594 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~  661 (764)
                      ++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++..
T Consensus       112 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  178 (229)
T 3e6j_A          112 VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI  178 (229)
T ss_dssp             TTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred             hhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence            99999999999998 78889999999999999999999877788999999999999999999988743

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=8.2e-19  Score=186.69  Aligned_cols=180  Identities=23%  Similarity=0.241  Sum_probs=120.8

Q ss_pred             cEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhh-cCCCccEEEccCCcCCccCCccccCCCCCCEEeCCC
Q 045580          411 RRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWIN-EFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSY  489 (764)
Q Consensus       411 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  489 (764)
                      +.++++++.++ .+|..+  .+.++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|+.|+|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            35555555555 234333  23466777777777655555555 677777777777777765566677777777777777


Q ss_pred             CcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccccccc
Q 045580          490 NKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDIL  569 (764)
Q Consensus       490 n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  569 (764)
                      |++++..+..|..                                                                  +
T Consensus        98 N~l~~~~~~~~~~------------------------------------------------------------------l  111 (361)
T 2xot_A           98 NHLHTLDEFLFSD------------------------------------------------------------------L  111 (361)
T ss_dssp             SCCCEECTTTTTT------------------------------------------------------------------C
T ss_pred             CcCCcCCHHHhCC------------------------------------------------------------------C
Confidence            7776444433332                                                                  3


Q ss_pred             ccccEEEcccCcccccCCccccCccccceecccccccccccCccc---cCCCCCCEEECcCCcCcccCcccccCCCC--C
Q 045580          570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSL---SNLKMIESLDLSHNDLSGQIPPQLTELNF--L  644 (764)
Q Consensus       570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~LdLs~N~l~~~ip~~l~~l~~--L  644 (764)
                      ++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..+   ..+++|+.|||++|+|++..+..+..++.  +
T Consensus       112 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l  191 (361)
T 2xot_A          112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK  191 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred             cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence            367777777777777777778888888888888888875433444   56788888888888888666667777776  3


Q ss_pred             CeEeccCCccccCCC
Q 045580          645 SNFNVSYNHLSGPTP  659 (764)
Q Consensus       645 ~~L~ls~N~l~g~~p  659 (764)
                      +.|++++|++.|.|.
T Consensus       192 ~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          192 NGLYLHNNPLECDCK  206 (361)
T ss_dssp             TTEECCSSCEECCHH
T ss_pred             ceEEecCCCccCCcC
Confidence            778888888887664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=7.8e-18  Score=173.17  Aligned_cols=170  Identities=23%  Similarity=0.336  Sum_probs=102.1

Q ss_pred             CCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEe
Q 045580          407 LSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILD  486 (764)
Q Consensus       407 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  486 (764)
                      +++|+.|++++|.+... + .+..+++|+.|++++|++++..+  +..+++|++|++++|++++ ++ .+..+++|+.|+
T Consensus        45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            33444444444444322 2 24455566666666666654333  5556666666666666653 22 256666666666


Q ss_pred             CCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccc
Q 045580          487 LSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKG  566 (764)
Q Consensus       487 Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  566 (764)
                      +++|++++. + .+.                                                                 
T Consensus       119 L~~n~i~~~-~-~l~-----------------------------------------------------------------  131 (291)
T 1h6t_A          119 LEHNGISDI-N-GLV-----------------------------------------------------------------  131 (291)
T ss_dssp             CTTSCCCCC-G-GGG-----------------------------------------------------------------
T ss_pred             CCCCcCCCC-h-hhc-----------------------------------------------------------------
Confidence            666666531 1 111                                                                 


Q ss_pred             cccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCe
Q 045580          567 DILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSN  646 (764)
Q Consensus       567 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~  646 (764)
                       .+++|+.|++++|++++.  ..++.+++|+.|++++|++++..|  ++.+++|+.|++++|++++ +| .+..+++|+.
T Consensus       132 -~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~  204 (291)
T 1h6t_A          132 -HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDV  204 (291)
T ss_dssp             -GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSE
T ss_pred             -CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence             133566777777777643  456777777777777777775544  7777777777777777774 34 3777777777


Q ss_pred             EeccCCcccc
Q 045580          647 FNVSYNHLSG  656 (764)
Q Consensus       647 L~ls~N~l~g  656 (764)
                      |++++|+++.
T Consensus       205 L~l~~n~i~~  214 (291)
T 1h6t_A          205 LELFSQECLN  214 (291)
T ss_dssp             EEEEEEEEEC
T ss_pred             EECcCCcccC
Confidence            7777777765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=1.1e-17  Score=164.43  Aligned_cols=156  Identities=19%  Similarity=0.196  Sum_probs=123.5

Q ss_pred             cEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcch-hhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCC
Q 045580          411 RRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIP-IWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSY  489 (764)
Q Consensus       411 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  489 (764)
                      +.+++++|.++. +|..+  ...++.|++++|++++..+ ..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            466666666653 44433  2356788888888876544 4577888888888888888877777888888889999998


Q ss_pred             CcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccccccc
Q 045580          490 NKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDIL  569 (764)
Q Consensus       490 n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  569 (764)
                      |++++..|..+..                                                                  +
T Consensus        91 N~l~~~~~~~~~~------------------------------------------------------------------l  104 (220)
T 2v70_A           91 NRLENVQHKMFKG------------------------------------------------------------------L  104 (220)
T ss_dssp             SCCCCCCGGGGTT------------------------------------------------------------------C
T ss_pred             CccCccCHhHhcC------------------------------------------------------------------C
Confidence            8888666655543                                                                  3


Q ss_pred             ccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCc
Q 045580          570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIP  635 (764)
Q Consensus       570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip  635 (764)
                      ++|++|+|++|++++..|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|.+++..+
T Consensus       105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            478889999999998888999999999999999999998889999999999999999999987654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=2.9e-18  Score=164.73  Aligned_cols=114  Identities=24%  Similarity=0.341  Sum_probs=92.3

Q ss_pred             cccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEe
Q 045580          569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFN  648 (764)
Q Consensus       569 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  648 (764)
                      +++|+.|+|++|++++..|..|+++++|+.|+|++|+|++..|..++++++|+.|+|++|++++.+|..+..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            34788889999999888888999999999999999999988888899999999999999999999999999999999999


Q ss_pred             ccCCccccCCCCCCCCCCCCccccCCCCCCCCCC
Q 045580          649 VSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPR  682 (764)
Q Consensus       649 ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~~  682 (764)
                      +++|+++|.++..+....+....+.++...|+.|
T Consensus       133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            9999999988754322222233445555567644

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=2.6e-17  Score=169.28  Aligned_cols=189  Identities=22%  Similarity=0.329  Sum_probs=100.5

Q ss_pred             CcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccc
Q 045580          268 LLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNN  347 (764)
Q Consensus       268 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n  347 (764)
                      +..+.+..+.++...  .+..+++|+.|++++|.+. .++.  +..+++|+.|++++|.+++...+..+++|++|++++|
T Consensus        26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             HHHHHhcCCCccccc--chhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCC
Confidence            334455555555332  3456677888888887776 4443  3556666666666666655444555555555555555


Q ss_pred             cCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchh
Q 045580          348 HFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGA  427 (764)
Q Consensus       348 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  427 (764)
                      .+++.  ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|++++                       .  ..
T Consensus       101 ~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-----------------------~--~~  151 (291)
T 1h6t_A          101 KVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-----------------------I--TV  151 (291)
T ss_dssp             CCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-----------------------C--GG
T ss_pred             cCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-----------------------c--hh
Confidence            55432  1244555555555555555432  234445555555555554443                       2  23


Q ss_pred             hcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC
Q 045580          428 LRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG  494 (764)
Q Consensus       428 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  494 (764)
                      +..+++|+.|++++|++++..+  +..+++|+.|++++|++++ ++ .+..+++|+.|++++|+++.
T Consensus       152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            4455555555555555554333  5555555555555555553 22 25555555555555555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=5.7e-17  Score=182.80  Aligned_cols=189  Identities=22%  Similarity=0.271  Sum_probs=123.5

Q ss_pred             CCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCC
Q 045580          292 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNN  371 (764)
Q Consensus       292 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  371 (764)
                      +..+.+..+.+.+.++   ...+++|+.|++++|.+.....+..+++|+.|+|++|.+++..+  +..+++|+.|+|++|
T Consensus        23 l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N   97 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN   97 (605)
T ss_dssp             HHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             HHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence            4445555555553333   24566777777777777666566667777777777777775544  667777777777777


Q ss_pred             ccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhh
Q 045580          372 MLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIW  451 (764)
Q Consensus       372 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~  451 (764)
                      .+.+ ++ .+..+++|+.|+|++|.+.+. +....+++|+.|++++|.+++.  ..+..+++|+.|+|++|++++..|  
T Consensus        98 ~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--  170 (605)
T 1m9s_A           98 KIKD-LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--  170 (605)
T ss_dssp             CCCC-CT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred             CCCC-Ch-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--
Confidence            7764 22 566777777777777777642 3333667777777777777654  456667777777777777765544  


Q ss_pred             hhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC
Q 045580          452 INEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG  494 (764)
Q Consensus       452 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  494 (764)
                      +..+++|+.|+|++|++++.  ..+..+++|+.|+|++|++++
T Consensus       171 l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          171 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            66677777777777777642  346667777777777776654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=2.7e-17  Score=185.37  Aligned_cols=193  Identities=20%  Similarity=0.256  Sum_probs=165.2

Q ss_pred             CCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEccc
Q 045580          267 ELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNN  346 (764)
Q Consensus       267 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~  346 (764)
                      .+..+.+..+.+....  .+..+++|+.|++++|.+. .++.  +..+++|+.|+|++|.+.+...+..+++|+.|+|++
T Consensus        22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred             HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcC
Confidence            4556677777776544  3678899999999999998 6664  578999999999999999887889999999999999


Q ss_pred             ccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccch
Q 045580          347 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPG  426 (764)
Q Consensus       347 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  426 (764)
                      |.+++.  ..+..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+++. +....+++|+.|+|++|.+.+..| 
T Consensus        97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-  170 (605)
T 1m9s_A           97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-  170 (605)
T ss_dssp             SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred             CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-
Confidence            999863  3689999999999999999863  4588999999999999999976 333389999999999999998766 


Q ss_pred             hhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCC
Q 045580          427 ALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIP  473 (764)
Q Consensus       427 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~  473 (764)
                       +..+++|+.|+|++|++++. | .+..+++|+.|+|++|++.+...
T Consensus       171 -l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             -GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCCC
T ss_pred             -hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCcc
Confidence             88999999999999999964 4 58999999999999999985433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=1.8e-17  Score=159.95  Aligned_cols=154  Identities=19%  Similarity=0.227  Sum_probs=106.3

Q ss_pred             cCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcc
Q 045580          429 RRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTL  508 (764)
Q Consensus       429 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~  508 (764)
                      ..+++|+.|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..|..+..      
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------  110 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------  110 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence            44556777777777776 444 4666777777777777554  2335667777777777777776544444332      


Q ss_pred             cccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCc
Q 045580          509 GQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPS  588 (764)
Q Consensus       509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~  588 (764)
                                                                                  +++|+.|++++|++++..|.
T Consensus       111 ------------------------------------------------------------l~~L~~L~Ls~n~i~~~~~~  130 (197)
T 4ezg_A          111 ------------------------------------------------------------LTSLTLLDISHSAHDDSILT  130 (197)
T ss_dssp             ------------------------------------------------------------CTTCCEEECCSSBCBGGGHH
T ss_pred             ------------------------------------------------------------CCCCCEEEecCCccCcHhHH
Confidence                                                                        33677777777777777777


Q ss_pred             cccCccccceecccccc-cccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCcccc
Q 045580          589 EIGSLSEIRALNLSHNF-LSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSG  656 (764)
Q Consensus       589 ~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  656 (764)
                      .++.+++|+.|++++|+ ++ .+| .++.+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus       131 ~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          131 KINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             HHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             HHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            78888888888888887 54 455 57888888888888888875 34 67788888888888888754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=1e-16  Score=157.50  Aligned_cols=152  Identities=22%  Similarity=0.250  Sum_probs=124.6

Q ss_pred             ceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCC
Q 045580          340 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMN  418 (764)
Q Consensus       340 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n  418 (764)
                      +.++++++.++. +|..+.  ++++.|++++|.+++..+..|..+++|++|++++|++++..|..+ .+++|+.|++++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            456666776663 444332  578888888888886666678888888888888888887777777 7888888888888


Q ss_pred             ccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC
Q 045580          419 AFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG  494 (764)
Q Consensus       419 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  494 (764)
                      .++...+..|..+++|+.|+|++|++++..|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            8886666678889999999999999998888889999999999999999997777788899999999999999874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.8e-17  Score=167.57  Aligned_cols=171  Identities=19%  Similarity=0.230  Sum_probs=136.0

Q ss_pred             cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEE
Q 045580          406 NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNIL  485 (764)
Q Consensus       406 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  485 (764)
                      .+.++..++++++.+++..  .+..+++|+.|++++|+++ .++ .+..+++|++|++++|++++..+  +..+++|+.|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            4556677778888777443  4677888889999988887 445 67888899999999998885444  8888999999


Q ss_pred             eCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccc
Q 045580          486 DLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYK  565 (764)
Q Consensus       486 ~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  565 (764)
                      ++++|++++ +|...                                                                 
T Consensus        91 ~L~~N~l~~-l~~~~-----------------------------------------------------------------  104 (263)
T 1xeu_A           91 SVNRNRLKN-LNGIP-----------------------------------------------------------------  104 (263)
T ss_dssp             ECCSSCCSC-CTTCC-----------------------------------------------------------------
T ss_pred             ECCCCccCC-cCccc-----------------------------------------------------------------
Confidence            999998874 22100                                                                 


Q ss_pred             ccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCC
Q 045580          566 GDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLS  645 (764)
Q Consensus       566 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~  645 (764)
                         .++|+.|++++|++++ ++ .++.+++|+.|++++|++++. | .++.+++|+.|++++|++++.  ..+..+++|+
T Consensus       105 ---~~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~  175 (263)
T 1xeu_A          105 ---SACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN  175 (263)
T ss_dssp             ---CSSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred             ---cCcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence               0368889999999985 33 588999999999999999864 4 688999999999999999976  6788899999


Q ss_pred             eEeccCCccccC
Q 045580          646 NFNVSYNHLSGP  657 (764)
Q Consensus       646 ~L~ls~N~l~g~  657 (764)
                      .|++++|++++.
T Consensus       176 ~L~l~~N~~~~~  187 (263)
T 1xeu_A          176 WIDLTGQKCVNE  187 (263)
T ss_dssp             EEEEEEEEEECC
T ss_pred             EEeCCCCcccCC
Confidence            999999999875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=6.1e-20  Score=205.82  Aligned_cols=86  Identities=27%  Similarity=0.330  Sum_probs=47.8

Q ss_pred             cccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccC-cccccCCCCCCeEec
Q 045580          571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQI-PPQLTELNFLSNFNV  649 (764)
Q Consensus       571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~l  649 (764)
                      +|+.|+|++|+++ .+|..++.+++|+.|+|++|+|++ +| .++++++|+.|+|++|++++.+ |..+..+++|+.|++
T Consensus       464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L  540 (567)
T 1dce_A          464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL  540 (567)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence            4555555555555 455555555555555555555553 44 5555555555555555555544 555555555555555


Q ss_pred             cCCccccCCC
Q 045580          650 SYNHLSGPTP  659 (764)
Q Consensus       650 s~N~l~g~~p  659 (764)
                      ++|++++.+|
T Consensus       541 ~~N~l~~~~~  550 (567)
T 1dce_A          541 QGNSLCQEEG  550 (567)
T ss_dssp             TTSGGGGSSS
T ss_pred             cCCcCCCCcc
Confidence            5555555444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=4.1e-17  Score=173.55  Aligned_cols=128  Identities=26%  Similarity=0.247  Sum_probs=95.7

Q ss_pred             CEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc--cCCCccEEeccCCccccccchhhcCCCCCCEEEccC
Q 045580          364 LELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRD  441 (764)
Q Consensus       364 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  441 (764)
                      +.++++++.++ .+|..+.  +.++.|+|++|++++..+..+  .+++|+.|++++|++++..+..|..+++|+.|+|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            57888888877 4565443  357888888888887666655  677788888888888776667777778888888888


Q ss_pred             CcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC
Q 045580          442 NQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG  494 (764)
Q Consensus       442 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  494 (764)
                      |++++..+..+..+++|++|+|++|++++..+..|..+++|+.|+|++|++++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence            88776666667777788888888888776667777777777777777777764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=2.5e-16  Score=155.73  Aligned_cols=156  Identities=23%  Similarity=0.196  Sum_probs=133.0

Q ss_pred             CCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEecc
Q 045580          338 NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMH  416 (764)
Q Consensus       338 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~  416 (764)
                      ..+.++.+++.++ .+|..+  .++|++|++++|.+++..|..|..+++|++|++++|++++..+..+ .+++|+.|+++
T Consensus        20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            3556777777776 444433  3789999999999998888888899999999999999987666666 78999999999


Q ss_pred             CCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCc
Q 045580          417 MNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPI  496 (764)
Q Consensus       417 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  496 (764)
                      +|++++..+..|..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            99998777777899999999999999999 77888999999999999999999776778899999999999999998655


Q ss_pred             C
Q 045580          497 P  497 (764)
Q Consensus       497 p  497 (764)
                      +
T Consensus       176 ~  176 (229)
T 3e6j_A          176 R  176 (229)
T ss_dssp             G
T ss_pred             c
Confidence            4

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=3.5e-17  Score=157.11  Aligned_cols=177  Identities=20%  Similarity=0.233  Sum_probs=118.5

Q ss_pred             CEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCc-cccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCC
Q 045580          435 TVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPN-QLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAG  513 (764)
Q Consensus       435 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~  513 (764)
                      +.+++++|+++ .+|..+.  .+|++|++++|++++..+. .+..+++|++|++++|++++..|..+.+           
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------   76 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-----------   76 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence            56677777765 4554443  2677777777777755543 3677788888888888887766655543           


Q ss_pred             ccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCc
Q 045580          514 SFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSL  593 (764)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l  593 (764)
                                                                             +++|+.|+|++|++++..|..|+++
T Consensus        77 -------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l  101 (192)
T 1w8a_A           77 -------------------------------------------------------ASHIQELQLGENKIKEISNKMFLGL  101 (192)
T ss_dssp             -------------------------------------------------------CTTCCEEECCSCCCCEECSSSSTTC
T ss_pred             -------------------------------------------------------cccCCEEECCCCcCCccCHHHhcCC
Confidence                                                                   3367888888888887777788889


Q ss_pred             cccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccC
Q 045580          594 SEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYG  673 (764)
Q Consensus       594 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~  673 (764)
                      ++|+.|+|++|++++.+|..++.+++|+.|+|++|++++..+-.. -...++...+..+...|.-|..  +....-..+.
T Consensus       102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~  178 (192)
T 1w8a_A          102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK--VRDVQIKDLP  178 (192)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTT--TTTSBGGGSC
T ss_pred             CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCChH--HcCCChhhCc
Confidence            999999999999998888899999999999999999987655210 0112233345556666655643  2222223344


Q ss_pred             CCCCCCCCCC
Q 045580          674 GNSGLCGPRI  683 (764)
Q Consensus       674 gn~~lc~~~~  683 (764)
                      .+...|..+.
T Consensus       179 ~~~~~C~~~~  188 (192)
T 1w8a_A          179 HSEFKCSSEN  188 (192)
T ss_dssp             TTTCCCCCC-
T ss_pred             HhhcCcCCCC
Confidence            4555565443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=1.2e-18  Score=195.30  Aligned_cols=195  Identities=22%  Similarity=0.208  Sum_probs=152.6

Q ss_pred             cCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCc-------------cccccchhhcCCCCCCEEE-ccCCcCCC
Q 045580          382 GNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNA-------------FNGSIPGALRRSSSLTVLD-LRDNQFSG  446 (764)
Q Consensus       382 ~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~-------------l~~~~~~~~~~~~~L~~L~-L~~n~l~~  446 (764)
                      ..+++|+.|+|++|+++ .+|..+ .+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            56788999999999987 566666 78899999987764             5566777788888888888 56654431


Q ss_pred             cchh------hhhc--CCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccc
Q 045580          447 SIPI------WINE--FSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLW  518 (764)
Q Consensus       447 ~~p~------~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~  518 (764)
                       ++.      .+..  ...|+.|++++|++++ +|. +..+++|+.|++++|.++ .+|..+++                
T Consensus       425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------------  484 (567)
T 1dce_A          425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA----------------  484 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG----------------
T ss_pred             -hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc----------------
Confidence             111      1111  1358899999999985 666 888999999999999998 67766654                


Q ss_pred             cccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccce
Q 045580          519 ETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRA  598 (764)
Q Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~  598 (764)
                                                                        +++|+.|+|++|++++ +| .++.+++|+.
T Consensus       485 --------------------------------------------------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~  512 (567)
T 1dce_A          485 --------------------------------------------------LRCLEVLQASDNALEN-VD-GVANLPRLQE  512 (567)
T ss_dssp             --------------------------------------------------CTTCCEEECCSSCCCC-CG-GGTTCSSCCE
T ss_pred             --------------------------------------------------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcE
Confidence                                                              3478999999999996 67 8999999999


Q ss_pred             eccccccccccc-CccccCCCCCCEEECcCCcCcccCccc---ccCCCCCCeEec
Q 045580          599 LNLSHNFLSGSI-PQSLSNLKMIESLDLSHNDLSGQIPPQ---LTELNFLSNFNV  649 (764)
Q Consensus       599 L~Ls~N~l~~~~-p~~l~~l~~L~~LdLs~N~l~~~ip~~---l~~l~~L~~L~l  649 (764)
                      |+|++|+|++.+ |..++.+++|+.|+|++|++++.+|..   +..+++|+.||+
T Consensus       513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999999877 999999999999999999999765532   334788888874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.9e-17  Score=191.64  Aligned_cols=133  Identities=22%  Similarity=0.273  Sum_probs=104.0

Q ss_pred             eCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCC
Q 045580          367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSG  446 (764)
Q Consensus       367 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  446 (764)
                      +++.|.+. ..+..+..++.|+.|+|++|.+....+..+.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+++ 
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-  283 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-  283 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence            34445444 5577888899999999999998844444558899999999999998 78888999999999999999999 


Q ss_pred             cchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcc
Q 045580          447 SIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANV  503 (764)
Q Consensus       447 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  503 (764)
                      .+|..++.+++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..+
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~  339 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK  339 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred             ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence            77999999999999999999998 778889999999999999999999888777553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.7e-17  Score=191.88  Aligned_cols=191  Identities=21%  Similarity=0.175  Sum_probs=122.1

Q ss_pred             CcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCc
Q 045580          392 ISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKG  470 (764)
Q Consensus       392 L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  470 (764)
                      ++.|.+. ..+..+ .+..|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..++.+++|++|+|++|+|+ 
T Consensus       208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-  283 (727)
T 4b8c_D          208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-  283 (727)
T ss_dssp             ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred             cccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence            3344444 445555 7889999999999998 66666778999999999999999 88888999999999999999999 


Q ss_pred             cCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCc
Q 045580          471 NIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQ  550 (764)
Q Consensus       471 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  550 (764)
                      .+|..+..+++|++|+|++|.++ .+|..+++                                                
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~------------------------------------------------  314 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGN------------------------------------------------  314 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTS------------------------------------------------
T ss_pred             ccChhhcCCCCCCEEECCCCCCC-ccChhhhc------------------------------------------------
Confidence            78999999999999999999986 66765544                                                


Q ss_pred             cceEEeeccccccccccccccccEEEcccCcccccCCccccCccc-cceecccccccccccCccccCCCCCCEEECcCC-
Q 045580          551 RGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSE-IRALNLSHNFLSGSIPQSLSNLKMIESLDLSHN-  628 (764)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N-  628 (764)
                                        +++|+.|+|++|.|++.+|..+..+.. +..|+|++|.++|.+|..      |+.|++++| 
T Consensus       315 ------------------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~  370 (727)
T 4b8c_D          315 ------------------LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDG  370 (727)
T ss_dssp             ------------------CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------
T ss_pred             ------------------CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeeccc
Confidence                              347899999999999999988876543 235889999999988864      556777777 


Q ss_pred             -------cCcccCcccccCCCCCCeEeccCCccccCCC
Q 045580          629 -------DLSGQIPPQLTELNFLSNFNVSYNHLSGPTP  659 (764)
Q Consensus       629 -------~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p  659 (764)
                             .+.+.++..+..+..+....+++|-+.+...
T Consensus       371 ~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~  408 (727)
T 4b8c_D          371 EPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA  408 (727)
T ss_dssp             -------------------------------CCCGGGC
T ss_pred             ccccccCCccccccchhhcccccceeeeeccccccccC
Confidence                   4555555666677777888899998875444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=2e-16  Score=159.89  Aligned_cols=169  Identities=22%  Similarity=0.291  Sum_probs=126.5

Q ss_pred             CCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcC
Q 045580          315 FSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISE  394 (764)
Q Consensus       315 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  394 (764)
                      .++..++++++.+++...+..+++|++|++++|.++.. + .+..+++|++|++++|.+++..+  +..+++|++|++++
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            34445555666666555555667777777777777643 3 57778888888888888875444  77888888888888


Q ss_pred             CCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCc
Q 045580          395 NQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPN  474 (764)
Q Consensus       395 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~  474 (764)
                      |++++..+ ... ++|+.|++++|.+++. + .+..+++|+.|++++|++++. + .+..+++|++|++++|++++.  .
T Consensus        95 N~l~~l~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~  166 (263)
T 1xeu_A           95 NRLKNLNG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G  166 (263)
T ss_dssp             SCCSCCTT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred             CccCCcCc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H
Confidence            88876432 223 7888888888888764 3 578888999999999998854 4 688889999999999999865  6


Q ss_pred             cccCCCCCCEEeCCCCcCcCC
Q 045580          475 QLCHLSLLNILDLSYNKFNGP  495 (764)
Q Consensus       475 ~~~~l~~L~~L~Ls~n~l~~~  495 (764)
                      .+..+++|+.|++++|++++.
T Consensus       167 ~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TSTTCCCCCEEEEEEEEEECC
T ss_pred             HhccCCCCCEEeCCCCcccCC
Confidence            688889999999999988765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=3e-16  Score=151.42  Aligned_cols=152  Identities=18%  Similarity=0.218  Sum_probs=87.1

Q ss_pred             cCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEE
Q 045580          287 SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL  366 (764)
Q Consensus       287 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  366 (764)
                      ..+++|++|++++|.+. .+| . +..+++|++|++++|.+.....+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            45566666666666665 555 2 35566666666666655544455566666666666666666566666777777777


Q ss_pred             eCcCCccCCCccccccCCCCCCEEECcCCC-CCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcC
Q 045580          367 DLSNNMLYGQIPHWFGNLSGLQFLDISENQ-LSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQF  444 (764)
Q Consensus       367 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  444 (764)
                      ++++|.+++..+..+..+++|++|++++|. ++ .++....+++|+.|++++|.+++. + .+..+++|+.|++++|++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCGGGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccHhhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence            777777766566666667777777777666 33 223211444444444444444431 1 334444444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=2e-16  Score=151.75  Aligned_cols=93  Identities=24%  Similarity=0.255  Sum_probs=83.5

Q ss_pred             cccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEe
Q 045580          569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFN  648 (764)
Q Consensus       569 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  648 (764)
                      +++|+.|+|++|++++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence            34788899999999887788899999999999999999988888999999999999999999977777899999999999


Q ss_pred             ccCCccccCCCCC
Q 045580          649 VSYNHLSGPTPNA  661 (764)
Q Consensus       649 ls~N~l~g~~p~~  661 (764)
                      +++|++.|.++..
T Consensus       133 L~~N~~~C~c~l~  145 (193)
T 2wfh_A          133 IGANPLYCDCNMQ  145 (193)
T ss_dssp             CCSSCEECSGGGH
T ss_pred             eCCCCeecCCcCH
Confidence            9999999987643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=1.4e-16  Score=167.13  Aligned_cols=282  Identities=13%  Similarity=0.068  Sum_probs=169.2

Q ss_pred             CCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhc-------
Q 045580          192 QLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKI-------  264 (764)
Q Consensus       192 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-------  264 (764)
                      +.+++.|.++++ +...-...+...+++|++|+|++|.+.........++.++.+.+..+    .+|...+..       
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~   98 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK   98 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhccccccccc
Confidence            346777777764 22111223332377788888888887621111222233444555544    455566666       


Q ss_pred             -CCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccc----c--ceeecCCCC
Q 045580          265 -LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHL----Q--GEVVFPNST  337 (764)
Q Consensus       265 -l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l----~--~~~~~~~~~  337 (764)
                       +++|+.|++.+ .++...+.+|..|++|+.+++++|.+. .++...|.++.++..+....+..    .  +...+..+.
T Consensus        99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence             78888888888 777666778888888888888888877 67776677766666665544221    1  011333444


Q ss_pred             CCc-eEEcccccCCCcccccc----cCCCCCCEEeCcCCccCCCccccc-cCCCCCCEEECcCCCCCCCCCCcc-cCCCc
Q 045580          338 NLC-WLYLNNNHFSGKIQDGL----SKATSLLELDLSNNMLYGQIPHWF-GNLSGLQFLDISENQLSGSVPSSF-NLSSL  410 (764)
Q Consensus       338 ~L~-~L~L~~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L  410 (764)
                      .|+ .+.+....   .++..+    ....+++.+.+.++-.. .....+ ..+++|+.+++++|+++......| ++.+|
T Consensus       177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L  252 (329)
T 3sb4_A          177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL  252 (329)
T ss_dssp             CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred             ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence            444 33332211   111111    12334445554443111 111111 236777777777777776666666 67777


Q ss_pred             cEEeccCCccccccchhhcCCCCCC-EEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEe
Q 045580          411 RRLYMHMNAFNGSIPGALRRSSSLT-VLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILD  486 (764)
Q Consensus       411 ~~L~l~~n~l~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  486 (764)
                      +.+++.+| +....+.+|.+|++|+ .+++.+ .++..-+.+|.+|++|+.+++++|+++...+..|.++++|+.+.
T Consensus       253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            77777776 6655667778888887 888877 66655567778888888888888888766666788888887775

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.6e-15  Score=142.25  Aligned_cols=65  Identities=28%  Similarity=0.280  Sum_probs=37.8

Q ss_pred             CCCCCEEEccCCcCC-CcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcC
Q 045580          431 SSSLTVLDLRDNQFS-GSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIP  497 (764)
Q Consensus       431 ~~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  497 (764)
                      .++|+.|++++|+++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~   88 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD   88 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH
Confidence            355666666666665 45555556666666666666666543  445555566666666665554444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=3.6e-15  Score=141.09  Aligned_cols=92  Identities=20%  Similarity=0.206  Sum_probs=78.5

Q ss_pred             ccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEec
Q 045580          570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNV  649 (764)
Q Consensus       570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  649 (764)
                      ++|+.|++++|++++..+..++.+++|+.|++++|++++..+..++.+++|+.|++++|++++..+..+..+++|++|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A           52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence            46788888888888666667888999999999999999777777899999999999999999776666788999999999


Q ss_pred             cCCccccCCCCC
Q 045580          650 SYNHLSGPTPNA  661 (764)
Q Consensus       650 s~N~l~g~~p~~  661 (764)
                      ++|++.|.+|..
T Consensus       132 ~~N~~~~~~~~l  143 (177)
T 2o6r_A          132 HTNPWDCSCPRI  143 (177)
T ss_dssp             CSSCBCCCHHHH
T ss_pred             cCCCeeccCccH
Confidence            999999988743

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=2.4e-15  Score=157.77  Aligned_cols=239  Identities=13%  Similarity=0.137  Sum_probs=131.0

Q ss_pred             CCCCcEEECcCCccc--------------------ccCchhhcC--------CCCCCEEECCCCCCCCcchhhhhCCCCC
Q 045580           71 LKKLVELDLSKNNLY--------------------GHLSPCLSN--------LTHIKVLDLSSNQLTGNLQSVIANIKSL  122 (764)
Q Consensus        71 l~~L~~L~Ls~n~l~--------------------~~~~~~l~~--------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  122 (764)
                      +++|++|||++|.+.                    .+.+.+|.+        +++|+.|+|++ .++...+.+|.++++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            789999999999988                    233456667        88888888887 7776667778888888


Q ss_pred             CEEECcCCCCCCCCChhhhccCCCCcEEEccCCCC-----CCccccCCCCCCCCcc-EEEcCCCCCCCccHhhh----CC
Q 045580          123 EYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLV-----KIETEEFPGLPEYQLK-ALNLRNCSLHALPSFLL----HQ  192 (764)
Q Consensus       123 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~-----~~~~~~~~~~~~~~L~-~L~L~~n~l~~lp~~l~----~~  192 (764)
                      ++|++++|.+. .++...|..+.++..+.......     .+...+|.  .+..|+ .+.+..  .+.++..+.    ..
T Consensus       127 ~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~--~~~~L~~~i~~~~--~~~l~~~~~~~~~~~  201 (329)
T 3sb4_A          127 KICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI--EGEPLETTIQVGA--MGKLEDEIMKAGLQP  201 (329)
T ss_dssp             CEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE--ESCCCEEEEEECT--TCCHHHHHHHTTCCG
T ss_pred             ceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccc--cccccceeEEecC--CCcHHHHHhhcccCc
Confidence            88888888776 56666777777777666654211     12222221  222344 344432  234444332    23


Q ss_pred             CCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCC-CCCCCCccEEEccCCCCCCCCChhHhhcCCCCc-E
Q 045580          193 LDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQL-PSSKHDLLRIDISHNKFSGQLPGNMGKILPELL-S  270 (764)
Q Consensus       193 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~-~  270 (764)
                      .+++.+.+.++-.. .....+...+++|+.+++++|.++..... ...+.+|+.+++.+| +. .++...+..+++|+ .
T Consensus       202 ~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~  278 (329)
T 3sb4_A          202 RDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGT  278 (329)
T ss_dssp             GGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEE
T ss_pred             cccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEE
Confidence            45677777665322 22233333477777777777766532211 123344444444443 32 34444444444554 5


Q ss_pred             EEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEE
Q 045580          271 LNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFL  320 (764)
Q Consensus       271 L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L  320 (764)
                      +++.+ .++...+.+|.+|++|+.+++++|.+. .++...|.++++|+.+
T Consensus       279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEE
T ss_pred             EEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhh
Confidence            55544 344334444555555555555444444 4444444444444444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=2.6e-15  Score=137.63  Aligned_cols=80  Identities=21%  Similarity=0.245  Sum_probs=44.4

Q ss_pred             cccEEEcccCcccccCCccccCccccceecccccccccc-cCccccCCCCCCEEECcCCcCcccCc---ccccCCCCCCe
Q 045580          571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGS-IPQSLSNLKMIESLDLSHNDLSGQIP---PQLTELNFLSN  646 (764)
Q Consensus       571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~LdLs~N~l~~~ip---~~l~~l~~L~~  646 (764)
                      +|+.|++++|++++.+|..++.+++|+.|++++|++++. .|..++.+++|+.|++++|++++..+   ..+..+++|++
T Consensus        65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  144 (149)
T 2je0_A           65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY  144 (149)
T ss_dssp             TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred             CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence            455555555555544555555555555566666655542 23555666666666666666665444   35556666666


Q ss_pred             Eecc
Q 045580          647 FNVS  650 (764)
Q Consensus       647 L~ls  650 (764)
                      ||++
T Consensus       145 L~l~  148 (149)
T 2je0_A          145 LDGY  148 (149)
T ss_dssp             ETTB
T ss_pred             ccCC
Confidence            6654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=2.6e-14  Score=136.97  Aligned_cols=129  Identities=26%  Similarity=0.340  Sum_probs=96.8

Q ss_pred             CEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCc
Q 045580          435 TVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGS  514 (764)
Q Consensus       435 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~  514 (764)
                      +.+++++|+++ .+|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|.+++..+..|.+            
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~------------   76 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------------   76 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC------------
Confidence            45666666666 4454332  46777777777776 56677777777888888888777655544443            


Q ss_pred             cccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCcc
Q 045580          515 FVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLS  594 (764)
Q Consensus       515 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~  594 (764)
                                                                            +++|+.|+|++|++++..|..|..++
T Consensus        77 ------------------------------------------------------l~~L~~L~Ls~N~l~~i~~~~f~~l~  102 (193)
T 2wfh_A           77 ------------------------------------------------------MTQLLTLILSYNRLRCIPPRTFDGLK  102 (193)
T ss_dssp             ------------------------------------------------------CTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred             ------------------------------------------------------CCCCCEEECCCCccCEeCHHHhCCCC
Confidence                                                                  33678888888888877777888999


Q ss_pred             ccceecccccccccccCccccCCCCCCEEECcCCcCccc
Q 045580          595 EIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQ  633 (764)
Q Consensus       595 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~  633 (764)
                      +|+.|+|++|+|++..+..+..+++|+.|+|++|.+.+.
T Consensus       103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          103 SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            999999999999966666788999999999999998753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=2.5e-14  Score=134.02  Aligned_cols=131  Identities=21%  Similarity=0.172  Sum_probs=62.2

Q ss_pred             CCCEEeCcCCccC-CCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEcc
Q 045580          362 SLLELDLSNNMLY-GQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLR  440 (764)
Q Consensus       362 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  440 (764)
                      +|+.|++++|.++ +.+|..+..+++|++|++++|.+++. .....+++|+.|++++|.+.+.+|..+..+++|+.|+++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            3444444444443 33344444444444444444444433 111144444444444444444444444445555555555


Q ss_pred             CCcCCCcc-hhhhhcCCCccEEEccCCcCCccCC---ccccCCCCCCEEeCCCCcCc
Q 045580          441 DNQFSGSI-PIWINEFSYLGILLLRGNQLKGNIP---NQLCHLSLLNILDLSYNKFN  493 (764)
Q Consensus       441 ~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~  493 (764)
                      +|++++.. +..+..+++|++|++++|++++..+   ..+..+++|+.|++++|.+.
T Consensus       104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            55555321 1445555555555555555553333   24555556666666555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=1.7e-14  Score=132.21  Aligned_cols=127  Identities=21%  Similarity=0.210  Sum_probs=78.9

Q ss_pred             CCCCEEeCcCCccC-CCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEc
Q 045580          361 TSLLELDLSNNMLY-GQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDL  439 (764)
Q Consensus       361 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  439 (764)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. +....+++|+.|++++|.+++.+|..+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            44555555555555 44555555566666666666665544 22225566666666666666556666666777777777


Q ss_pred             cCCcCCCc-chhhhhcCCCccEEEccCCcCCccCC---ccccCCCCCCEEeCC
Q 045580          440 RDNQFSGS-IPIWINEFSYLGILLLRGNQLKGNIP---NQLCHLSLLNILDLS  488 (764)
Q Consensus       440 ~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls  488 (764)
                      ++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|+.||++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            77777653 23666777777777777777775444   356667777777765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.54  E-value=1.5e-13  Score=147.86  Aligned_cols=136  Identities=15%  Similarity=0.212  Sum_probs=76.6

Q ss_pred             ccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCcccc
Q 045580           84 LYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEE  163 (764)
Q Consensus        84 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  163 (764)
                      ++.+-..+|.++++|+.++|..+ ++.....+|.++++|+.+++..+ ++ .++...|.++.+|+.+.+..+...+...+
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCceeeeccee
Confidence            44445567777777777777643 55555667777777777777654 33 45556677777777766665544444444


Q ss_pred             CCCCCCCCccEEEcCCCCCCCc-cHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCC
Q 045580          164 FPGLPEYQLKALNLRNCSLHAL-PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNN  228 (764)
Q Consensus       164 ~~~~~~~~L~~L~L~~n~l~~l-p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n  228 (764)
                      |....   +........ ...+ ...+..+.+|+.+.+..+. . .++...|.++++|+.+.+..+
T Consensus       136 F~~~~---~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          136 FKGCD---FKEITIPEG-VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             TTTCC---CSEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT
T ss_pred             eeccc---ccccccCcc-ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC
Confidence            44332   222222211 1122 2345566667777665442 2 455555556666666655443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.53  E-value=5.4e-13  Score=142.81  Aligned_cols=263  Identities=13%  Similarity=0.190  Sum_probs=147.0

Q ss_pred             CCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCCCCCccE
Q 045580           95 LTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKA  174 (764)
Q Consensus        95 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  174 (764)
                      +..++.+.+.++ ++.....+|.++ +|+.+++..+ ++ .++...|.++ +|+.+.+.++...+...+|...  .+|+.
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~~l~~I~~~aF~~c--~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPSTLEQLKEDIFYYC--YNLKK  184 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCTTCCEECSSTTTTC--TTCCE
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCCCccEehHHHhhCc--ccCCe
Confidence            456666666553 554555666664 5777777655 43 4555556553 5666666654444554444433  34677


Q ss_pred             EEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCC
Q 045580          175 LNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFS  254 (764)
Q Consensus       175 L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~  254 (764)
                      +++.+|++..++...+.+.+|+.+.+..+ ++ .++...|.++++|+.+.+..+ ++                       
T Consensus       185 l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~-----------------------  238 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VS-----------------------  238 (401)
T ss_dssp             EECTTSCCSEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CC-----------------------
T ss_pred             eecCCCcceEechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-cc-----------------------
Confidence            77766666666655555667777777643 44 566666666666776666553 22                       


Q ss_pred             CCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCccc----ccCchhhhhCCCCCCEEEeecccccce
Q 045580          255 GQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFS----GELPRQFLSGCFSLSFLSLSDNHLQGE  330 (764)
Q Consensus       255 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~----~~~p~~~~~~l~~L~~L~l~~n~l~~~  330 (764)
                       .++...+.. .+|+.+.+. +.++.....+|.+|++|+.+++.++.+.    ..++...|.+|++|+.+++.+ .+...
T Consensus       239 -~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I  314 (401)
T 4fdw_A          239 -TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRIL  314 (401)
T ss_dssp             -EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEE
T ss_pred             -Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEE
Confidence             233333332 345555552 2333334445555555555555554332    124444555566666666653 23322


Q ss_pred             e--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCC-CCCEEECcCCC
Q 045580          331 V--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLS-GLQFLDISENQ  396 (764)
Q Consensus       331 ~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~  396 (764)
                      .  .|.++++|+.+.+..+ ++.....+|.++ +|+.+++.+|.+....+..|.+++ +++.|.+..+.
T Consensus       315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            2  5556666666666443 444555667777 777777777766655555666663 56667665543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.51  E-value=6.1e-13  Score=142.39  Aligned_cols=164  Identities=12%  Similarity=0.114  Sum_probs=84.9

Q ss_pred             CChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCC
Q 045580          257 LPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNS  336 (764)
Q Consensus       257 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  336 (764)
                      ++...+..+++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+. .++...|.+|++|+.+++.++.+..       
T Consensus       217 I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~-------  285 (401)
T 4fdw_A          217 IGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFND-------  285 (401)
T ss_dssp             ECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCC-------
T ss_pred             ehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccC-------
Confidence            33333344555555555443 33333334444 445555552 2233 3444444445555555444443320       


Q ss_pred             CCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEec
Q 045580          337 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYM  415 (764)
Q Consensus       337 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l  415 (764)
                                +........+|.++++|+.+++.+ .++......|.++++|+.+.|..+ ++......| ++ +|+.+++
T Consensus       286 ----------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l  352 (401)
T 4fdw_A          286 ----------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKV  352 (401)
T ss_dssp             ----------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEE
T ss_pred             ----------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEE
Confidence                      001123445566666677766663 344444556666677777777443 554445555 55 6777777


Q ss_pred             cCCccccccchhhcCCC-CCCEEEccCCcC
Q 045580          416 HMNAFNGSIPGALRRSS-SLTVLDLRDNQF  444 (764)
Q Consensus       416 ~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l  444 (764)
                      .+|......+..|.+++ .++.|.+..+.+
T Consensus       353 ~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          353 EGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             cCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            77766655555666663 667777766543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.51  E-value=3.2e-16  Score=151.36  Aligned_cols=155  Identities=22%  Similarity=0.257  Sum_probs=107.9

Q ss_pred             hcCCCCCCEEEccCCcCCCcchh------hhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhh
Q 045580          428 LRRSSSLTVLDLRDNQFSGSIPI------WINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFA  501 (764)
Q Consensus       428 ~~~~~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  501 (764)
                      +.....++.++++.+.+++.+|.      .+..+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            33445556666666666655554      77778888888888888775 55 6777788888888888776 3443322


Q ss_pred             cchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCc
Q 045580          502 NVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNE  581 (764)
Q Consensus       502 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  581 (764)
                      .                                                                  +++|+.|++++|+
T Consensus        91 ~------------------------------------------------------------------~~~L~~L~L~~N~  104 (198)
T 1ds9_A           91 V------------------------------------------------------------------ADTLEELWISYNQ  104 (198)
T ss_dssp             H------------------------------------------------------------------HHHCSEEEEEEEE
T ss_pred             c------------------------------------------------------------------CCcCCEEECcCCc
Confidence            2                                                                  2367788888888


Q ss_pred             ccccCCccccCccccceecccccccccccC-ccccCCCCCCEEECcCCcCcccCccc----------ccCCCCCCeEecc
Q 045580          582 LTGDIPSEIGSLSEIRALNLSHNFLSGSIP-QSLSNLKMIESLDLSHNDLSGQIPPQ----------LTELNFLSNFNVS  650 (764)
Q Consensus       582 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~LdLs~N~l~~~ip~~----------l~~l~~L~~L~ls  650 (764)
                      +++ +| .++.+++|+.|++++|++++..+ ..+..+++|+.|++++|++++.+|..          +..+++|+.||  
T Consensus       105 l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--  180 (198)
T 1ds9_A          105 IAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--  180 (198)
T ss_dssp             CCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--
T ss_pred             CCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--
Confidence            875 44 57778888888888888874332 46778888888888888887766653          67778888776  


Q ss_pred             CCccc
Q 045580          651 YNHLS  655 (764)
Q Consensus       651 ~N~l~  655 (764)
                      +|+++
T Consensus       181 ~~~i~  185 (198)
T 1ds9_A          181 GMPVD  185 (198)
T ss_dssp             CGGGT
T ss_pred             CcccC
Confidence            55554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=2.1e-13  Score=128.92  Aligned_cols=132  Identities=23%  Similarity=0.263  Sum_probs=97.1

Q ss_pred             CCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccC
Q 045580          363 LLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRD  441 (764)
Q Consensus       363 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  441 (764)
                      .+.++++++.++ .+|..+  .++|++|++++|++++..+..+ .+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            345666666655 333322  2466777777777665555554 567777777777777766666678888899999999


Q ss_pred             CcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcC
Q 045580          442 NQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIP  497 (764)
Q Consensus       442 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  497 (764)
                      |++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            98887767777888999999999999986666667889999999999999987665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.48  E-value=1.3e-12  Score=140.62  Aligned_cols=291  Identities=14%  Similarity=0.170  Sum_probs=165.3

Q ss_pred             eeccccccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhh
Q 045580           62 VFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSL  141 (764)
Q Consensus        62 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l  141 (764)
                      ..-..+|.++++|+.+.|.. .++.+...+|.++++|+.+++..+ ++.....+|.++.+|+.+.+..+ +. .+....|
T Consensus        61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF  136 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAF  136 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTT
T ss_pred             EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceee
Confidence            33456788999999999975 477677789999999999999866 66566778999999999888755 32 4455567


Q ss_pred             ccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCcc-HhhhCCCCccEEEccCCCCCCccchHHhhcCCCC
Q 045580          142 KNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALP-SFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKL  220 (764)
Q Consensus       142 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  220 (764)
                      .++..++.. .......+...+|..  +.+|+.+.+.++ +..++ ..+..+.+|+.+++..+ ++ .++...+.++..|
T Consensus       137 ~~~~~~~~~-~~~~~~~i~~~aF~~--c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L  210 (394)
T 4fs7_A          137 KGCDFKEIT-IPEGVTVIGDEAFAT--CESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILL  210 (394)
T ss_dssp             TTCCCSEEE-CCTTCCEECTTTTTT--CTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTC
T ss_pred             ecccccccc-cCccccccchhhhcc--cCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ce-EeCchhhcccccc
Confidence            776544443 333333444444443  456999999765 44454 45677899999999876 44 6777777788888


Q ss_pred             CEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCC
Q 045580          221 DTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSN  300 (764)
Q Consensus       221 ~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n  300 (764)
                      +.+.+..+...-. .....                         ...|+.+.+... ++......+..+..|+.+.+..+
T Consensus       211 ~~i~~~~~~~~i~-~~~~~-------------------------~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~  263 (394)
T 4fs7_A          211 ENMEFPNSLYYLG-DFALS-------------------------KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN  263 (394)
T ss_dssp             CBCCCCTTCCEEC-TTTTT-------------------------TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred             ceeecCCCceEee-hhhcc-------------------------cCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence            8777665433210 01112                         234444444322 12222334455555555555444


Q ss_pred             cccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCcccc
Q 045580          301 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHW  380 (764)
Q Consensus       301 ~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  380 (764)
                      ..  .++...+..+..++.+......+. ...+..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+
T Consensus       264 ~~--~i~~~~F~~~~~l~~~~~~~~~i~-~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a  338 (394)
T 4fs7_A          264 KL--RIGGSLFYNCSGLKKVIYGSVIVP-EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRS  338 (394)
T ss_dssp             TC--EECSCTTTTCTTCCEEEECSSEEC-TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred             cc--eeeccccccccccceeccCceeec-cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHh
Confidence            22  233333344455554444332211 113334444444444332 23233344555555555555432 33222344


Q ss_pred             ccCCCCCCEEECcC
Q 045580          381 FGNLSGLQFLDISE  394 (764)
Q Consensus       381 ~~~l~~L~~L~L~~  394 (764)
                      |.++.+|+.+.+..
T Consensus       339 F~~c~~L~~i~lp~  352 (394)
T 4fs7_A          339 FRGCTSLSNINFPL  352 (394)
T ss_dssp             TTTCTTCCEECCCT
T ss_pred             ccCCCCCCEEEECc
Confidence            55555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=1.1e-13  Score=129.66  Aligned_cols=92  Identities=18%  Similarity=0.188  Sum_probs=85.4

Q ss_pred             ccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEec
Q 045580          570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNV  649 (764)
Q Consensus       570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  649 (764)
                      +.++.|+|++|++++..|..|+.+++|+.|+|++|+|++..|..+.++++|+.|+|++|+|++..|..|..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            36889999999999888999999999999999999999777778899999999999999999887778999999999999


Q ss_pred             cCCccccCCCCC
Q 045580          650 SYNHLSGPTPNA  661 (764)
Q Consensus       650 s~N~l~g~~p~~  661 (764)
                      ++|+++|.++..
T Consensus       110 ~~N~~~c~c~~l  121 (170)
T 3g39_A          110 LNNPWDCACSDI  121 (170)
T ss_dssp             CSSCBCTTBGGG
T ss_pred             CCCCCCCCchhH
Confidence            999999988754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=8.4e-14  Score=131.45  Aligned_cols=84  Identities=15%  Similarity=0.138  Sum_probs=49.3

Q ss_pred             cccEEEcccCcccccCCccccCccccceecccccccccccCc--cccCCCCCCEEECcCCcCcccCccc----ccCCCCC
Q 045580          571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQ--SLSNLKMIESLDLSHNDLSGQIPPQ----LTELNFL  644 (764)
Q Consensus       571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~LdLs~N~l~~~ip~~----l~~l~~L  644 (764)
                      +|+.|++++|++++..|..++.+++|+.|++++|+++ .+|.  .++.+++|+.|++++|+++ .+|..    +..+++|
T Consensus        65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV  142 (176)
T ss_dssp             SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred             CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence            4555555555555333333356666666666666664 3444  5666666677777777666 34443    6666777


Q ss_pred             CeEeccCCcccc
Q 045580          645 SNFNVSYNHLSG  656 (764)
Q Consensus       645 ~~L~ls~N~l~g  656 (764)
                      +.||+++|....
T Consensus       143 ~~Ld~~~n~~~~  154 (176)
T 1a9n_A          143 RVLDFQKVKLKE  154 (176)
T ss_dssp             SEETTEECCHHH
T ss_pred             ceeCCCcCCHHH
Confidence            777777666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=2.7e-15  Score=144.75  Aligned_cols=151  Identities=23%  Similarity=0.244  Sum_probs=112.5

Q ss_pred             CccEEeccCCccccccc------hhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCC
Q 045580          409 SLRRLYMHMNAFNGSIP------GALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLL  482 (764)
Q Consensus       409 ~L~~L~l~~n~l~~~~~------~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  482 (764)
                      .++.++++.+.+.+..|      ..+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            34444444444444443      377888888888888888885 56 7888888888999888888 567777777889


Q ss_pred             CEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccc
Q 045580          483 NILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYE  562 (764)
Q Consensus       483 ~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  562 (764)
                      ++|++++|++++ +| .+..                                                            
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~------------------------------------------------------------  113 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEK------------------------------------------------------------  113 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHH------------------------------------------------------------
T ss_pred             CEEECcCCcCCc-CC-cccc------------------------------------------------------------
Confidence            999999998875 33 2222                                                            


Q ss_pred             cccccccccccEEEcccCcccccCC-ccccCccccceecccccccccccCcc----------ccCCCCCCEEECcCCcCc
Q 045580          563 SYKGDILNYMTGLDFSCNELTGDIP-SEIGSLSEIRALNLSHNFLSGSIPQS----------LSNLKMIESLDLSHNDLS  631 (764)
Q Consensus       563 ~~~~~~l~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~LdLs~N~l~  631 (764)
                            +++|+.|++++|++++..+ ..+..+++|+.|++++|.+++.+|..          +..+++|+.||  +|.++
T Consensus       114 ------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          114 ------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             ------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence                  3478889999999985332 47888999999999999998776653          88899999997  77776


Q ss_pred             c
Q 045580          632 G  632 (764)
Q Consensus       632 ~  632 (764)
                      .
T Consensus       186 ~  186 (198)
T 1ds9_A          186 V  186 (198)
T ss_dssp             T
T ss_pred             H
Confidence            3

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=3.6e-13  Score=126.52  Aligned_cols=92  Identities=18%  Similarity=0.195  Sum_probs=83.9

Q ss_pred             ccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEec
Q 045580          570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNV  649 (764)
Q Consensus       570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  649 (764)
                      +.|+.|+|++|++++..|..|+++++|+.|+|++|+|++..+..++++++|+.|||++|+|++..+..|..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            37899999999999888999999999999999999999766667899999999999999999777777999999999999


Q ss_pred             cCCccccCCCCC
Q 045580          650 SYNHLSGPTPNA  661 (764)
Q Consensus       650 s~N~l~g~~p~~  661 (764)
                      ++|++.+.++..
T Consensus       113 ~~N~~~c~~~~~  124 (174)
T 2r9u_A          113 YNNPWDCECRDI  124 (174)
T ss_dssp             CSSCBCTTBGGG
T ss_pred             CCCCcccccccH
Confidence            999999987744

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=5.7e-13  Score=125.68  Aligned_cols=133  Identities=20%  Similarity=0.188  Sum_probs=87.5

Q ss_pred             ccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCE
Q 045580          357 LSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTV  436 (764)
Q Consensus       357 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  436 (764)
                      +.++.+|+.|++++|.++. ++......++|++|++++|.+++. +....+++|+.|++++|.+++..+..+..+++|+.
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            3445566666666666652 333222223666666666666654 22225667777777777776554455577788888


Q ss_pred             EEccCCcCCCcchh--hhhcCCCccEEEccCCcCCccCCcc----ccCCCCCCEEeCCCCcCc
Q 045580          437 LDLRDNQFSGSIPI--WINEFSYLGILLLRGNQLKGNIPNQ----LCHLSLLNILDLSYNKFN  493 (764)
Q Consensus       437 L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~  493 (764)
                      |++++|+++ .+|.  .+..+++|++|++++|.++ .+|..    +..+++|+.||+++|...
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            888888886 4554  6778888888888888887 45553    778888999998888754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=3.3e-12  Score=119.53  Aligned_cols=108  Identities=20%  Similarity=0.239  Sum_probs=96.1

Q ss_pred             cccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEecc
Q 045580          571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVS  650 (764)
Q Consensus       571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  650 (764)
                      ..+.+++++|+++ .+|..+.  ++|+.|+|++|+|++..|..++++++|+.|+|++|+|++..|..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4578999999998 5887764  889999999999998889999999999999999999998888888999999999999


Q ss_pred             CCccccCCCC-CCCCCCCCccccCCCCCCCCC
Q 045580          651 YNHLSGPTPN-AGQFANFDEQNYGGNSGLCGP  681 (764)
Q Consensus       651 ~N~l~g~~p~-~~~~~~~~~~~~~gn~~lc~~  681 (764)
                      +|+|++..|. ...+..++...+.+|+..|..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            9999987765 356778888899999998864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=4.8e-12  Score=118.76  Aligned_cols=107  Identities=18%  Similarity=0.225  Sum_probs=94.7

Q ss_pred             ccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccC
Q 045580          572 MTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSY  651 (764)
Q Consensus       572 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  651 (764)
                      -+.+++++|+++ .+|..+.  ++|+.|+|++|+|++..|..++++++|+.|+|++|+|++..+..|..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            367999999997 7888775  8999999999999998899999999999999999999987777789999999999999


Q ss_pred             CccccCCCC-CCCCCCCCccccCCCCCCCCC
Q 045580          652 NHLSGPTPN-AGQFANFDEQNYGGNSGLCGP  681 (764)
Q Consensus       652 N~l~g~~p~-~~~~~~~~~~~~~gn~~lc~~  681 (764)
                      |+|++..|. ...+..++...+.+|+..|.+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            999986665 456778888889999988864

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.29  E-value=2.2e-10  Score=123.07  Aligned_cols=326  Identities=13%  Similarity=0.144  Sum_probs=165.3

Q ss_pred             cccccCCC-CCcEEECcCCcccccCchhhcCCCCCCEEECCCCC---CCCcchhhhhCCCCCCEEECcCCCCCCCCChhh
Q 045580           65 NTGICELK-KLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQ---LTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNS  140 (764)
Q Consensus        65 ~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  140 (764)
                      ..+|.+.+ .|+.+.+-.+ ++.+-..+|.++++|+.+.+..|.   ++.....+|.++.+|+.+.+..+ ++ .++...
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~a  132 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEA  132 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTT
T ss_pred             HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhh
Confidence            34455553 4777777643 565666777788888888776653   45445567777777777776554 22 455556


Q ss_pred             hccCCCCcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCC
Q 045580          141 LKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKL  220 (764)
Q Consensus       141 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  220 (764)
                      |..+.+|+.+.+..+...+....|...  ..|+.+.+..+ +..+....+...+|+.+.+..+-.  .+....+..+.++
T Consensus       133 F~~c~~L~~i~lp~~~~~I~~~~F~~c--~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~--~i~~~af~~c~~l  207 (394)
T 4gt6_A          133 FHHCEELDTVTIPEGVTSVADGMFSYC--YSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT--RIGTNAFSECFAL  207 (394)
T ss_dssp             TTTCTTCCEEECCTTCCEECTTTTTTC--TTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC--EECTTTTTTCTTC
T ss_pred             hhhhcccccccccceeeeecccceecc--cccccccccce-eeEeccccccccceeEEEECCccc--ccccchhhhcccc
Confidence            777777777777665555555444433  34777776543 455554444455677777665432  3333445566666


Q ss_pred             CEEEccCCcCccCCCCCC-CCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCC
Q 045580          221 DTLYLLNNSLSGNFQLPS-SKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSS  299 (764)
Q Consensus       221 ~~L~L~~n~l~~~~~~~~-~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~  299 (764)
                      +......+.......... ...........       .+     ....+..+.+.. .++.....+|..+..|+.+.+..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-----~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~  274 (394)
T 4gt6_A          208 STITSDSESYPAIDNVLYEKSANGDYALIR-------YP-----SQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPD  274 (394)
T ss_dssp             CEEEECCSSSCBSSSCEEEECTTSCEEEEE-------CC-----TTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCT
T ss_pred             ceecccccccccccceeecccccccccccc-------cc-----cccccceEEcCC-cceEcccceeeecccccEEeccc
Confidence            666555443321100000 00000000000       00     011222222221 12222334555666666666654


Q ss_pred             CcccccCchhhhhCCCCCCEEEeeccccccee--ecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCc
Q 045580          300 NNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI  377 (764)
Q Consensus       300 n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  377 (764)
                      +..  .+....+.+++.|+.+.+.. .+....  .|.++.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++...
T Consensus       275 ~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~  349 (394)
T 4gt6_A          275 SVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP  349 (394)
T ss_dssp             TCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC
T ss_pred             ccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh
Confidence            322  34444455666666666642 222222  5566666666666543 44344556666777777776543 44344


Q ss_pred             cccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCC
Q 045580          378 PHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMN  418 (764)
Q Consensus       378 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n  418 (764)
                      ..+|.+|++|+.+++.++....  ...+.+.+|+.+.+..+
T Consensus       350 ~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          350 ESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             GGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred             HhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence            4566677777777766654321  11224556666655544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.28  E-value=2.4e-13  Score=144.17  Aligned_cols=63  Identities=19%  Similarity=0.295  Sum_probs=29.0

Q ss_pred             cccEEEcccCccccc----CCccccCccccceecccccccccc----cCccccCCCCCCEEECcCCcCccc
Q 045580          571 YMTGLDFSCNELTGD----IPSEIGSLSEIRALNLSHNFLSGS----IPQSLSNLKMIESLDLSHNDLSGQ  633 (764)
Q Consensus       571 ~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdLs~N~l~~~  633 (764)
                      .|++|||++|.+++.    ++..+...++|+.|+|++|.|++.    ++..+...++|++|||++|.|+..
T Consensus       184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            345555555554431    233334444555555555555432    223333445555555555555533

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.24  E-value=5.5e-13  Score=141.36  Aligned_cols=165  Identities=19%  Similarity=0.138  Sum_probs=117.6

Q ss_pred             CCCCCEEEccCCcCCCcchhhhhc-----CCCccEEEccCCcCCccCCccc-cCCCCCCEEeCCCCcCcCCcChhhhcch
Q 045580          431 SSSLTVLDLRDNQFSGSIPIWINE-----FSYLGILLLRGNQLKGNIPNQL-CHLSLLNILDLSYNKFNGPIPVCFANVT  504 (764)
Q Consensus       431 ~~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  504 (764)
                      ++.|+.|++++|.++......+..     .++|++|+|++|.+++.....+ ..+++|+.|+|++|.++......+...-
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            356788888888877544333322     2688888888888765433333 2356789999999988643322222100


Q ss_pred             hhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccc
Q 045580          505 LWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTG  584 (764)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~  584 (764)
                                                                                   ....+.|+.|+|++|.++.
T Consensus       151 -------------------------------------------------------------~~~~~~L~~L~Ls~n~l~~  169 (372)
T 3un9_A          151 -------------------------------------------------------------LHDQCQITTLRLSNNPLTA  169 (372)
T ss_dssp             -------------------------------------------------------------HSTTCCCCEEECCSSCCHH
T ss_pred             -------------------------------------------------------------HhcCCccceeeCCCCCCCh
Confidence                                                                         0012478999999999875


Q ss_pred             ----cCCccccCccccceecccccccccc----cCccccCCCCCCEEECcCCcCccc----CcccccCCCCCCeEeccCC
Q 045580          585 ----DIPSEIGSLSEIRALNLSHNFLSGS----IPQSLSNLKMIESLDLSHNDLSGQ----IPPQLTELNFLSNFNVSYN  652 (764)
Q Consensus       585 ----~ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~ls~N  652 (764)
                          .++..+...++|++|+|++|.|++.    ++..+...++|+.|||++|.|+..    ++..+...+.|++||+++|
T Consensus       170 ~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          170 AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence                2455567889999999999999864    366778889999999999999853    4555667789999999999


Q ss_pred             cccc
Q 045580          653 HLSG  656 (764)
Q Consensus       653 ~l~g  656 (764)
                      +++.
T Consensus       250 ~i~~  253 (372)
T 3un9_A          250 ELSS  253 (372)
T ss_dssp             SCCH
T ss_pred             CCCH
Confidence            9875

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.24  E-value=4.9e-10  Score=120.31  Aligned_cols=321  Identities=12%  Similarity=0.155  Sum_probs=169.1

Q ss_pred             ccccCchhhcCCC-CCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCC---CCCCCChhhhccCCCCcEEEccCCCCCC
Q 045580           84 LYGHLSPCLSNLT-HIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN---FEGSFSFNSLKNHSKLQVFKLSNSLVKI  159 (764)
Q Consensus        84 l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~l~~l~~L~~L~l~~~~~~~  159 (764)
                      ++.+-..+|.++. .|+.+.+..+ ++.+...+|.++++|+.+.+..|.   ++ .++...|.++.+|+.+.+..+...+
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~~~~I  128 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDSVTEI  128 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTTCSEE
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCcccee
Confidence            4445567888884 6999999865 776778899999999999998764   33 5666778888888888777665555


Q ss_pred             ccccCCCCCCCCccEEEcCCCCCCCcc-HhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCC
Q 045580          160 ETEEFPGLPEYQLKALNLRNCSLHALP-SFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPS  238 (764)
Q Consensus       160 ~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  238 (764)
                      ...+|...  .+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ ++ .+....| ....|+.+.+..+...       
T Consensus       129 ~~~aF~~c--~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF-~~~~l~~i~ip~~~~~-------  195 (394)
T 4gt6_A          129 DSEAFHHC--EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAF-TGTALTQIHIPAKVTR-------  195 (394)
T ss_dssp             CTTTTTTC--TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTT-TTCCCSEEEECTTCCE-------
T ss_pred             hhhhhhhh--cccccccccce-eeeecccceecccccccccccce-ee-Eeccccc-cccceeEEEECCcccc-------
Confidence            55444433  34666666532 33332 34455566666666543 22 3444444 2344555555443222       


Q ss_pred             CCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCc-------------cccCCCCCCEEECCCCccccc
Q 045580          239 SKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPS-------------SMSEMKRLESLDLSSNNFSGE  305 (764)
Q Consensus       239 ~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-------------~l~~l~~L~~L~Ls~n~l~~~  305 (764)
                                        +....+..+..++.............-.             .+.....+..+.+... +. .
T Consensus       196 ------------------i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~  255 (394)
T 4gt6_A          196 ------------------IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-R  255 (394)
T ss_dssp             ------------------ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-E
T ss_pred             ------------------cccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ce-E
Confidence                              1112222234444444333322110000             0111122222222211 11 2


Q ss_pred             CchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCC
Q 045580          306 LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLS  385 (764)
Q Consensus       306 ~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  385 (764)
                      +...                      .|..+..|+.+.+..+... ....+|.++++|+.+.+.. .++......|.++.
T Consensus       256 i~~~----------------------aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~  311 (394)
T 4gt6_A          256 IETH----------------------AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCI  311 (394)
T ss_dssp             ECTT----------------------TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCT
T ss_pred             cccc----------------------eeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCC
Confidence            2222                      3444555555555433222 3344566666666666643 33333345666667


Q ss_pred             CCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEcc
Q 045580          386 GLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLR  464 (764)
Q Consensus       386 ~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  464 (764)
                      +|+.+.|..+ ++.....+| ++.+|+.+.+..+ ++..-..+|.+|++|+.+++.++...   ...+..+.+|+.+.+.
T Consensus       312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVA  386 (394)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC------
T ss_pred             CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeC
Confidence            7777776543 444444555 6677777777543 44455567888888888888776532   2345666777777776


Q ss_pred             CCcC
Q 045580          465 GNQL  468 (764)
Q Consensus       465 ~n~l  468 (764)
                      .+.+
T Consensus       387 ~~~~  390 (394)
T 4gt6_A          387 PGSI  390 (394)
T ss_dssp             ----
T ss_pred             CCCE
Confidence            5543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.24  E-value=7.7e-12  Score=132.12  Aligned_cols=90  Identities=21%  Similarity=0.187  Sum_probs=82.2

Q ss_pred             ccccEEEccc-CcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEe
Q 045580          570 NYMTGLDFSC-NELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFN  648 (764)
Q Consensus       570 ~~L~~LdLs~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  648 (764)
                      ++|+.|+|++ |+|++..|..|+++++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..+..++ |+.|+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~  109 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV  109 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence            4799999996 999988889999999999999999999999999999999999999999999987777777776 99999


Q ss_pred             ccCCccccCCCC
Q 045580          649 VSYNHLSGPTPN  660 (764)
Q Consensus       649 ls~N~l~g~~p~  660 (764)
                      +++|++.|.++.
T Consensus       110 l~~N~~~c~c~l  121 (347)
T 2ifg_A          110 LSGNPLHCSCAL  121 (347)
T ss_dssp             CCSSCCCCCGGG
T ss_pred             eeCCCccCCCcc
Confidence            999999997763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=5.1e-11  Score=125.77  Aligned_cols=107  Identities=20%  Similarity=0.234  Sum_probs=94.1

Q ss_pred             cEEEcccC-cccccCCccccCccccceecccc-cccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEecc
Q 045580          573 TGLDFSCN-ELTGDIPSEIGSLSEIRALNLSH-NFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVS  650 (764)
Q Consensus       573 ~~LdLs~N-~l~~~ip~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  650 (764)
                      ..++++++ +++ .+|. +..+++|+.|+|++ |+|++..|..|+++++|+.|||++|+|++..|..|..|++|++|||+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45799998 898 5888 99999999999996 99998888999999999999999999999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCCccccCCCCCCCCC
Q 045580          651 YNHLSGPTPNAGQFANFDEQNYGGNSGLCGP  681 (764)
Q Consensus       651 ~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~~  681 (764)
                      +|+|++..|.......+....+.+|+..|..
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHCSC  119 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence            9999986665544444777888899988854

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.01  E-value=2.2e-08  Score=106.78  Aligned_cols=308  Identities=12%  Similarity=0.151  Sum_probs=167.4

Q ss_pred             ccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCC
Q 045580           68 ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKL  147 (764)
Q Consensus        68 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L  147 (764)
                      +....+|+.+.+.. .++.+-..+|.++++|+.++|..+ ++.....+|.++ +|+.+.+..+ +. .++...|... +|
T Consensus        42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L  115 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DL  115 (379)
T ss_dssp             GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CC
T ss_pred             cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-Cc
Confidence            33445666666653 355555667888888888887654 555556677776 5666666543 32 3444445443 57


Q ss_pred             cEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCc-cHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEcc
Q 045580          148 QVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHAL-PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLL  226 (764)
Q Consensus       148 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~l-p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~  226 (764)
                      +.+.+..+...+...+|...   +++.+.+..+ +..+ ...+..+.+++.+.+..+...........  .......   
T Consensus       116 ~~i~lp~~~~~i~~~~F~~~---~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~---  186 (379)
T 4h09_A          116 DDFEFPGATTEIGNYIFYNS---SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL--YNKNKTI---  186 (379)
T ss_dssp             SEEECCTTCCEECTTTTTTC---CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE--EETTSSE---
T ss_pred             ccccCCCccccccccccccc---eeeeeeccce-eeccccchhcccccccccccccccceeeccccee--cccccce---
Confidence            77777655444444443322   3444444332 2222 12344455555555554432211000000  0000000   


Q ss_pred             CCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccC
Q 045580          227 NNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGEL  306 (764)
Q Consensus       227 ~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  306 (764)
                             .........+..+.+.....  .+....+.....|+.+.+..+ +......++..+..|+.+.+..+ +. .+
T Consensus       187 -------~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I  254 (379)
T 4h09_A          187 -------LESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SI  254 (379)
T ss_dssp             -------EEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EE
T ss_pred             -------ecccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-Ee
Confidence                   00011222333333332211  122222233566777776544 33344556777777877777655 43 56


Q ss_pred             chhhhhCCCCCCEEEeecccccce--eecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCC
Q 045580          307 PRQFLSGCFSLSFLSLSDNHLQGE--VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNL  384 (764)
Q Consensus       307 p~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l  384 (764)
                      ....+.++.+|+.+.+..+ +...  ..|..+++|+.+.+.++.++.....+|.++.+|+.++|..+ ++.....+|.++
T Consensus       255 ~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C  332 (379)
T 4h09_A          255 GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC  332 (379)
T ss_dssp             CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             Cccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence            6666677777888777543 3222  26777788888888777777666777888888888888654 443445678888


Q ss_pred             CCCCEEECcCCCCCCCCCCcc
Q 045580          385 SGLQFLDISENQLSGSVPSSF  405 (764)
Q Consensus       385 ~~L~~L~L~~n~l~~~~~~~~  405 (764)
                      .+|+.+.+..+ ++.....+|
T Consensus       333 ~~L~~i~ip~~-v~~I~~~aF  352 (379)
T 4h09_A          333 KALSTISYPKS-ITLIESGAF  352 (379)
T ss_dssp             TTCCCCCCCTT-CCEECTTTT
T ss_pred             CCCCEEEECCc-cCEEchhHh
Confidence            88888887654 444444555

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.96  E-value=2.3e-08  Score=106.68  Aligned_cols=316  Identities=14%  Similarity=0.138  Sum_probs=206.9

Q ss_pred             hhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCcEEEccCCCCCCccccCCCCCC
Q 045580           90 PCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPE  169 (764)
Q Consensus        90 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  169 (764)
                      +++....+|+.+.+... ++.+...+|.++.+|+.+++..+ ++ .++...|.++ +|+.+.+..+...+...+|..   
T Consensus        40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~l~~I~~~aF~~---  112 (379)
T 4h09_A           40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMERVKKFGDYVFQG---  112 (379)
T ss_dssp             TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTTCCEECTTTTTT---
T ss_pred             cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCceeeEeccceecc---
Confidence            34666778899888754 66566778999999999999754 44 5666778777 677777776655566555543   


Q ss_pred             CCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEcc
Q 045580          170 YQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDIS  249 (764)
Q Consensus       170 ~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls  249 (764)
                      .+|+.+.+..+ +..+....+...+++.+.+..+ ++ .+....+..+..++...+..+.........        ....
T Consensus       113 ~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~--------~~~~  181 (379)
T 4h09_A          113 TDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENY--------VLYN  181 (379)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCCCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETT--------EEEE
T ss_pred             CCcccccCCCc-cccccccccccceeeeeeccce-ee-ccccchhcccccccccccccccceeecccc--------eecc
Confidence            35788887654 3444433333345666655543 22 344444556666766666544322110000        0000


Q ss_pred             CCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccc
Q 045580          250 HNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG  329 (764)
Q Consensus       250 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~  329 (764)
                      ...   .....+ .....+..+.+.... .......+..+.+|+.+.+..+ +. .++...+.++..|+.+.+..+ ++.
T Consensus       182 ~~~---~~~~~~-~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~  253 (379)
T 4h09_A          182 KNK---TILESY-PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTS  253 (379)
T ss_dssp             TTS---SEEEEC-CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCE
T ss_pred             ccc---ceeccc-cccccccccccccce-eEEeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccE
Confidence            000   111111 113455566554432 2345567788899999998765 33 566666788999999999775 433


Q ss_pred             e--eecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-c
Q 045580          330 E--VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-N  406 (764)
Q Consensus       330 ~--~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~  406 (764)
                      .  ..+.++.+|+.+.+..+ +......+|.++.+|+.+.+.++.++......|.++.+|+.+.|..+ ++.....+| +
T Consensus       254 I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~  331 (379)
T 4h09_A          254 IGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKN  331 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             eCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhC
Confidence            2  37888999999999754 55466678999999999999998887666788999999999999754 665556677 8


Q ss_pred             CCCccEEeccCCccccccchhhcCCCCC
Q 045580          407 LSSLRRLYMHMNAFNGSIPGALRRSSSL  434 (764)
Q Consensus       407 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L  434 (764)
                      +.+|+.+.+..+ ++..-..+|.++..+
T Consensus       332 C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          332 CKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             CTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             CCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            999999999765 554556778877544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=3.8e-09  Score=110.77  Aligned_cols=83  Identities=16%  Similarity=0.259  Sum_probs=56.7

Q ss_pred             cccccEEEcccCcccccCCccc---cCccccceecccccccccc----cCccccCCCCCCEEECcCCcCcccCcccccC-
Q 045580          569 LNYMTGLDFSCNELTGDIPSEI---GSLSEIRALNLSHNFLSGS----IPQSLSNLKMIESLDLSHNDLSGQIPPQLTE-  640 (764)
Q Consensus       569 l~~L~~LdLs~N~l~~~ip~~l---~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~-  640 (764)
                      +++|+.|+|++|.+.+..+..+   ..+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            4578888888888775443333   2577888888888888764    4445567788899999888887543333433 


Q ss_pred             CCCCCeEeccCCc
Q 045580          641 LNFLSNFNVSYNH  653 (764)
Q Consensus       641 l~~L~~L~ls~N~  653 (764)
                      +  ...++++.|+
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  3557777775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.77  E-value=5.4e-09  Score=109.60  Aligned_cols=88  Identities=17%  Similarity=0.251  Sum_probs=62.6

Q ss_pred             cccccEEEccc--Cccccc-----CCccc--cCccccceecccccccccccCcccc---CCCCCCEEECcCCcCccc---
Q 045580          569 LNYMTGLDFSC--NELTGD-----IPSEI--GSLSEIRALNLSHNFLSGSIPQSLS---NLKMIESLDLSHNDLSGQ---  633 (764)
Q Consensus       569 l~~L~~LdLs~--N~l~~~-----ip~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~LdLs~N~l~~~---  633 (764)
                      +++|+.|+|+.  |...+.     +...+  ..+++|+.|+|++|.+++..+..+.   .+++|++|||+.|.+++.   
T Consensus       218 lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~  297 (362)
T 2ra8_A          218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR  297 (362)
T ss_dssp             CTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH
T ss_pred             CCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH
Confidence            45777787753  221111     11222  3578999999999999865544443   578999999999999864   


Q ss_pred             -CcccccCCCCCCeEeccCCcccc
Q 045580          634 -IPPQLTELNFLSNFNVSYNHLSG  656 (764)
Q Consensus       634 -ip~~l~~l~~L~~L~ls~N~l~g  656 (764)
                       ++..+..+++|+.|++++|.++.
T Consensus       298 ~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          298 LLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             HHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHhhcccCCcceEEECCCCcCCH
Confidence             45555668999999999998764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.41  E-value=7.8e-08  Score=90.82  Aligned_cols=61  Identities=13%  Similarity=0.223  Sum_probs=29.4

Q ss_pred             cccEEEcccCccccc----CCccccCccccceecc--cccccccc----cCccccCCCCCCEEECcCCcCc
Q 045580          571 YMTGLDFSCNELTGD----IPSEIGSLSEIRALNL--SHNFLSGS----IPQSLSNLKMIESLDLSHNDLS  631 (764)
Q Consensus       571 ~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~L--s~N~l~~~----~p~~l~~l~~L~~LdLs~N~l~  631 (764)
                      .|++|+|++|.++..    +...+...++|++|+|  ++|.|+..    +...+...++|+.|+|++|.+.
T Consensus        94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            455555555555432    2333444445555555  44555433    2233344455555555555553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=7.8e-08  Score=90.84  Aligned_cols=86  Identities=17%  Similarity=0.322  Sum_probs=67.2

Q ss_pred             ccccEEEcccCccccc----CCccccCccccceecccccccccc----cCccccCCCCCCEEEC--cCCcCccc----Cc
Q 045580          570 NYMTGLDFSCNELTGD----IPSEIGSLSEIRALNLSHNFLSGS----IPQSLSNLKMIESLDL--SHNDLSGQ----IP  635 (764)
Q Consensus       570 ~~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdL--s~N~l~~~----ip  635 (764)
                      +.|++|||++|++...    +...+...++|++|+|++|.|+..    +...+...++|++|+|  ++|.++..    +.
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~  144 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  144 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence            3567777777777542    344455668899999999999865    5677888899999999  88999854    44


Q ss_pred             ccccCCCCCCeEeccCCccc
Q 045580          636 PQLTELNFLSNFNVSYNHLS  655 (764)
Q Consensus       636 ~~l~~l~~L~~L~ls~N~l~  655 (764)
                      +.+...+.|++|++++|.+.
T Consensus       145 ~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          145 NMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCcCEEeccCCCCC
Confidence            56666789999999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=2.8e-07  Score=91.37  Aligned_cols=66  Identities=24%  Similarity=0.333  Sum_probs=34.4

Q ss_pred             Cccccceeccccccccc--ccCccccCCCCCCEEECcCCcCcccCcccccCCC--CCCeEeccCCccccCCC
Q 045580          592 SLSEIRALNLSHNFLSG--SIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELN--FLSNFNVSYNHLSGPTP  659 (764)
Q Consensus       592 ~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~--~L~~L~ls~N~l~g~~p  659 (764)
                      ++++|+.|+||+|+|++  .+|..++.+++|+.|+|++|+|++.  ..+..+.  .|+.|++++|++++.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            44555555555555554  2344445555555555555555543  2223333  55566666666555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.27  E-value=7.6e-07  Score=88.28  Aligned_cols=80  Identities=31%  Similarity=0.471  Sum_probs=39.9

Q ss_pred             CCCCCcEEECcCCcccc--cCchhhcCCCCCCEEECCCCCCCCcchhhhhCCC--CCCEEECcCCCCCCCCCh------h
Q 045580           70 ELKKLVELDLSKNNLYG--HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIK--SLEYLSLDDNNFEGSFSF------N  139 (764)
Q Consensus        70 ~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~------~  139 (764)
                      ++++|++|+|++|.|++  .++..+..+++|++|+|++|+|++.  ..+..+.  +|++|+|++|.+.+.+|.      .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            34555555555555554  2334445555555555555555543  1222222  555555555555543331      2


Q ss_pred             hhccCCCCcEEE
Q 045580          140 SLKNHSKLQVFK  151 (764)
Q Consensus       140 ~l~~l~~L~~L~  151 (764)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            244555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.99  E-value=4.8e-06  Score=76.36  Aligned_cols=84  Identities=12%  Similarity=0.141  Sum_probs=63.8

Q ss_pred             CCCcEEECcCCcccccCchhhcCCCCCCEEECCCCC-CCCcchhhhhCC----CCCCEEECcCCC-CCCCCChhhhccCC
Q 045580           72 KKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQ-LTGNLQSVIANI----KSLEYLSLDDNN-FEGSFSFNSLKNHS  145 (764)
Q Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~l~~l~  145 (764)
                      -+|++||++++.+++.--..+..+++|++|+|++|. +++.--..++.+    ++|++|+|++|. ++ .-....+.+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHHhcCC
Confidence            479999999999887766678899999999999994 876656667765    479999999985 55 22334566677


Q ss_pred             CCcEEEccCCC
Q 045580          146 KLQVFKLSNSL  156 (764)
Q Consensus       146 ~L~~L~l~~~~  156 (764)
                      +|++|+++++.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            77777776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.74  E-value=1.8e-05  Score=72.50  Aligned_cols=84  Identities=8%  Similarity=-0.048  Sum_probs=60.7

Q ss_pred             CCccEEeccCCccccccchhhcCCCCCCEEEccCCc-CCCcchhhhhcC----CCccEEEccCCc-CCccCCccccCCCC
Q 045580          408 SSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQ-FSGSIPIWINEF----SYLGILLLRGNQ-LKGNIPNQLCHLSL  481 (764)
Q Consensus       408 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~  481 (764)
                      ..|+.||+++|.++..--..+..+++|+.|+|++|. +++..-..+..+    ++|++|+|++|. +++.--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356677777776665544556778888888888884 665544555553    478899998874 77655566778899


Q ss_pred             CCEEeCCCCc
Q 045580          482 LNILDLSYNK  491 (764)
Q Consensus       482 L~~L~Ls~n~  491 (764)
                      |+.|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999885

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.33  E-value=0.00027  Score=61.74  Aligned_cols=61  Identities=20%  Similarity=0.190  Sum_probs=42.6

Q ss_pred             eecccccccc-cccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCC
Q 045580          598 ALNLSHNFLS-GSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPN  660 (764)
Q Consensus       598 ~L~Ls~N~l~-~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~  660 (764)
                      .++.+++.++ ..+|..+.  ++|+.|||++|+|+...+..|..+++|+.|+|++|++.+.+..
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l   73 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL   73 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence            4555555554 23454332  4578888888888876677778888888888888888886653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.04  E-value=0.0002  Score=66.87  Aligned_cols=41  Identities=7%  Similarity=0.161  Sum_probs=20.3

Q ss_pred             hcCCCccEEEccCC-cCCcc----CCccccCCCCCCEEeCCCCcCc
Q 045580          453 NEFSYLGILLLRGN-QLKGN----IPNQLCHLSLLNILDLSYNKFN  493 (764)
Q Consensus       453 ~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~  493 (764)
                      ..-+.|+.|+|++| ++...    +.+.+..-..|+.|+|++|.+.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence            33455666666553 44421    2333444455555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.99  E-value=0.001  Score=62.05  Aligned_cols=65  Identities=20%  Similarity=0.303  Sum_probs=46.6

Q ss_pred             cCCCCCcEEECcCC-ccccc----CchhhcCCCCCCEEECCCCCCCCc----chhhhhCCCCCCEEECcCCCCC
Q 045580           69 CELKKLVELDLSKN-NLYGH----LSPCLSNLTHIKVLDLSSNQLTGN----LQSVIANIKSLEYLSLDDNNFE  133 (764)
Q Consensus        69 ~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~  133 (764)
                      .+-+.|++|+|++| .|...    +..++..-+.|+.|+|++|+|...    +..++..-+.|++|+|++|.|.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            34567888888875 66532    456677778888888888888743    3445566778888888888775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.55  E-value=0.003  Score=54.96  Aligned_cols=57  Identities=25%  Similarity=0.295  Sum_probs=47.7

Q ss_pred             cEEEcccCccc-ccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCc
Q 045580          573 TGLDFSCNELT-GDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS  631 (764)
Q Consensus       573 ~~LdLs~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~  631 (764)
                      ..+|.++++++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47899999997 45776543  36899999999999766778899999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	764
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-23
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-08
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  100 bits (248), Expect = 4e-23
 Identities = 72/382 (18%), Positives = 130/382 (34%), Gaps = 29/382 (7%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
           L + ++  L K N+   +S   ++L  +  L      +  ++   +  + +L  ++  +N
Sbjct: 21  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNN 76

Query: 131 NFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLL 190
                    +L     + +     + +                        L  L +   
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 191 HQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNS----------LSGNFQLPSSK 240
            +L    I         T    L   N   D   L N +             +  + +  
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 241 HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSN 300
            +L  +  ++N+ S   P  +      L  L+L+ N    +   +++ +  L  LDL++N
Sbjct: 197 TNLESLIATNNQISDITPLGIL---TNLDELSLNGNQL--KDIGTLASLTNLTDLDLANN 251

Query: 301 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKA 360
             S   P   LSG   L+ L L  N +         T L  L LN N          S  
Sbjct: 252 QISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI--SNL 306

Query: 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAF 420
            +L  L L  N +    P    +L+ LQ L  + N++S  V S  NL+++  L    N  
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQI 363

Query: 421 NGSIPGALRRSSSLTVLDLRDN 442
           +   P  L   + +T L L D 
Sbjct: 364 SDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.5 bits (218), Expect = 2e-19
 Identities = 74/404 (18%), Positives = 141/404 (34%), Gaps = 53/404 (13%)

Query: 263 KILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL 322
             L E +   L +    V    S +++ ++ +L             ++L+   +L+ ++ 
Sbjct: 19  TALAEKMKTVLGKT--NVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLN---NLTQINF 73

Query: 323 SDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFG 382
           S+N L       N T L  + +NNN  +           + L L  +       + +   
Sbjct: 74  SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 383 ---------NLSGLQFLDISENQLSGSVPSSFN----LSSLRRLYMHMNAFNGSIPGALR 429
                     +S +  L    +    S  +       L++L  L     + N     ++ 
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 430 RS-SSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLS 488
              ++L  L   +NQ S   P+ I   + L  L L GNQLK      L  L+ L  LDL+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 489 YNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKAS 548
            N+ +   P+                           T+         ++S +      +
Sbjct: 250 NNQISNLAPLSGL------------------------TKLTELKLGANQISNISPLAGLT 285

Query: 549 GQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSG 608
               +E    +  +      L  +T L    N ++   P  + SL++++ L  ++N +S 
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

Query: 609 SIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYN 652
               SL+NL  I  L   HN +S   P  L  L  ++   ++  
Sbjct: 344 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.5 bits (205), Expect = 1e-17
 Identities = 72/354 (20%), Positives = 131/354 (37%), Gaps = 29/354 (8%)

Query: 66  TGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 125
            G+  L  L +++ S N L       L NLT +  + +++NQ+            +    
Sbjct: 60  DGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGL-- 115

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
                N + +         +  ++   SN++  I         +           S    
Sbjct: 116 --TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ---------LSFGNQ 164

Query: 186 PSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 245
            + L    +L  ++             +L   T L++L   NN +S    L    + L  
Sbjct: 165 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN-LDE 223

Query: 246 IDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGE 305
           + ++ N+      G +   L  L  L+L+ N      P  +S + +L  L L +N  S  
Sbjct: 224 LSLNGNQLKD--IGTLAS-LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 278

Query: 306 LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLE 365
            P   L+     + L L++N L+      N  NL +L L  N+ S      +S  T L  
Sbjct: 279 SPLAGLTAL---TNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQR 333

Query: 366 LDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNA 419
           L  +NN +         NL+ + +L    NQ+S   P + NL+ + +L ++  A
Sbjct: 334 LFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA-NLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.7 bits (203), Expect = 2e-17
 Identities = 66/338 (19%), Positives = 124/338 (36%), Gaps = 21/338 (6%)

Query: 171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDT-------- 222
           Q+  L      + ++   + +  +L  I+ S+N+L    P   L     +          
Sbjct: 45  QVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI 103

Query: 223 -LYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVR 281
                  +L+G     +   D+  +    N    +L  N    +  L  L   +      
Sbjct: 104 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN 163

Query: 282 IPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCW 341
             + +  +  L +L+    + +       L+   +L  L  ++N +         TNL  
Sbjct: 164 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 223

Query: 342 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSV 401
           L LN N         L+  T+L +LDL+NN +    P     L+ L  L +  NQ+S  +
Sbjct: 224 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-I 278

Query: 402 PSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGIL 461
                L++L  L ++ N      P       +LT L L  N  S   P  ++  + L  L
Sbjct: 279 SPLAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 334

Query: 462 LLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVC 499
               N++     + L +L+ +N L   +N+ +   P+ 
Sbjct: 335 FFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA 370

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 31  QELWHKFFPKGSITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSP 90
            EL        +I+  +   +          +   + I  LK L  L L  NN+      
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--IS 323

Query: 91  CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVF 150
            +S+LT ++ L  ++N+++    S +AN+ ++ +LS   N         +L     +   
Sbjct: 324 PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTR---ITQL 378

Query: 151 KLSN 154
            L++
Sbjct: 379 GLND 382

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (195), Expect = 6e-17
 Identities = 49/274 (17%), Positives = 85/274 (31%), Gaps = 8/274 (2%)

Query: 175 LNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF 234
            +     L A+P  +      + I L  N++     +               N     + 
Sbjct: 16  TSCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 235 QLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLES 294
              +    L ++D+S N     +       L  L +L+L   G +   P     +  L+ 
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 295 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGK 352
           L L  N         F     +L+ L L  N +    E  F    +L  L L+ N  +  
Sbjct: 134 LYLQDNALQALPDDTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 353 IQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRR 412
                     L+ L L  N L          L  LQ+L +++N       +    + L++
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 252

Query: 413 LYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSG 446
                +    S+P  L       +  L  N   G
Sbjct: 253 FRGSSSEVPCSLPQRLA---GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (191), Expect = 2e-16
 Identities = 59/257 (22%), Positives = 93/257 (36%), Gaps = 8/257 (3%)

Query: 241 HDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSN 300
               RI +  N+ S  +P    +    L  L L  N       ++ + +  LE LDLS N
Sbjct: 32  AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 301 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLS 358
                +      G   L  L L    LQ      F     L +LYL +N       D   
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 359 KATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHM 417
              +L  L L  N +       F  L  L  L + +N+++   P +F +L  L  LY+  
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 418 NAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLC 477
           N  +     AL    +L  L L DN +          +++L       +++  ++P +L 
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLA 269

Query: 478 HLSLLNILDLSYNKFNG 494
              L     L+ N   G
Sbjct: 270 GRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 2e-11
 Identities = 54/299 (18%), Positives = 94/299 (31%), Gaps = 48/299 (16%)

Query: 336 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISEN 395
                 ++L+ N  S           +L  L L +N+L       F  L+ L+ LD+S+N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 396 QLSGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWIN 453
               SV  +    L  L  L++         PG  R  ++L  L L+DN           
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 454 EFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAG 513
           +   L  L L GN++          L  L+ L L  N+     P  F ++          
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 514 SFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMT 573
           + +    T+ ++                                              + 
Sbjct: 211 NNLSALPTEALAPLR------------------------------------------ALQ 228

Query: 574 GLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG 632
            L  + N    D  +     + ++    S + +  S+PQ L+   +     L+ NDL G
Sbjct: 229 YLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 42/298 (14%), Positives = 77/298 (25%), Gaps = 48/298 (16%)

Query: 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAF 420
            +   + L  N +       F     L  L +  N L+    ++F   +L       +  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 421 NGSI--PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCH 478
                 P        L  L L         P      + L  L L+ N L+    +    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 479 LSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLEL 538
           L  L  L L  N+ +      F    L +L                      + N    +
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRG--LHSL-----------------DRLLLHQNRVAHV 192

Query: 539 SEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRA 598
                                         L  +  L    N L+      +  L  ++ 
Sbjct: 193 HPHAFRD-----------------------LGRLMTLYLFANNLSALPTEALAPLRALQY 229

Query: 599 LNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSG 656
           L L+ N        +      ++    S +++   +P +L   +      ++ N L G
Sbjct: 230 LRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLK---RLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 4e-10
 Identities = 47/233 (20%), Positives = 77/233 (33%), Gaps = 8/233 (3%)

Query: 269 LSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLS---FLSLSDN 325
           ++ +  + G +  +P  +      + + L  N  S  +P      C +L+     S    
Sbjct: 14  VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLA 69

Query: 326 HLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLS 385
            +        +        +N                L  L L    L    P  F  L+
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 386 GLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQF 444
            LQ+L + +N L      +F +L +L  L++H N  +     A R   SL  L L  N+ 
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 445 SGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIP 497
           +   P    +   L  L L  N L       L  L  L  L L+ N +     
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 56/305 (18%), Positives = 100/305 (32%), Gaps = 54/305 (17%)

Query: 96  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNS 155
              + + L  N+++    +     ++L  L L  N      +          Q+    N+
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 156 LVKIETEEFPGLPEYQLKALNLRNCSLHAL-PSFLLHQLDLRFIDLSHNKLQGTFPSWLL 214
            ++            +L  L+L  C L  L P        L+++ L  N LQ        
Sbjct: 92  QLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT-F 149

Query: 215 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLS 274
           ++   L  L+L  N +S                         +P    + L  L  L L 
Sbjct: 150 RDLGNLTHLFLHGNRISS------------------------VPERAFRGLHSLDRLLLH 185

Query: 275 ENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFP 334
           +N      P +  ++ RL +L L +NN S  LP + L+   +L +L L+DN         
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVC----- 239

Query: 335 NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISE 394
                  L+                   L +   S++ +   +P     L+G     ++ 
Sbjct: 240 -DCRARPLWAW-----------------LQKFRGSSSEVPCSLP---QRLAGRDLKRLAA 278

Query: 395 NQLSG 399
           N L G
Sbjct: 279 NDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 37/188 (19%), Positives = 63/188 (33%), Gaps = 5/188 (2%)

Query: 89  SPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQ 148
                 L  +  L L    L      +   + +L+YL L DN  +     ++ ++   L 
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLT 156

Query: 149 VFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQG 207
              L  N +  +    F GL       L+ +N   H  P        L  + L  N    
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLH-QNRVAHVHPHAFRDLGRLMTLYLFANN-LS 214

Query: 208 TFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNM-GKILP 266
             P+  L     L  L L +N    + +       L +   S ++    LP  + G+ L 
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLK 274

Query: 267 ELLSLNLS 274
            L + +L 
Sbjct: 275 RLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 5e-07
 Identities = 29/197 (14%), Positives = 50/197 (25%), Gaps = 7/197 (3%)

Query: 60  LTVFVNTGICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 119
           L          L +L  L L +  L          L  ++ L L  N L         ++
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 120 KSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRN 179
            +L +L L  N         + +    L    L  + V              +      N
Sbjct: 153 GNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 180 CSLHALPSFLLHQLDLRFIDLSHNKLQGTFP-SWLLQNNTKLDTLYLLNNSLSGNFQLPS 238
                    L     L+++ L+ N          L      L      ++ +     LP 
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW---LQKFRGSSSEVPC--SLPQ 266

Query: 239 SKHDLLRIDISHNKFSG 255
                    ++ N   G
Sbjct: 267 RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 38/254 (14%), Positives = 62/254 (24%), Gaps = 21/254 (8%)

Query: 431 SSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYN 490
           +               ++P+ I   +    + L GN++             L IL L  N
Sbjct: 10  NEPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN 66

Query: 491 KFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQ 550
                    F  + L      + +  L                 TL L          G 
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL--GRLHTLHLDRCGLQELGPGL 124

Query: 551 RGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSI 610
                                +  L    N L          L  +  L L  N +S   
Sbjct: 125 FRGLAA---------------LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169

Query: 611 PQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYN-HLSGPTPNAGQFANFDE 669
            ++   L  ++ L L  N ++   P    +L  L    +  N   + PT           
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229

Query: 670 QNYGGNSGLCGPRI 683
                N  +C  R 
Sbjct: 230 LRLNDNPWVCDCRA 243

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.1 bits (188), Expect = 6e-16
 Identities = 50/259 (19%), Positives = 80/259 (30%), Gaps = 3/259 (1%)

Query: 170 YQLKALNLRNCSLH---ALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLL 226
           Y++  L+L   +L     +PS L +   L F+ +             +   T+L  LY+ 
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 227 NNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSM 286
           + ++SG      S+   L                    LP L+ +    N     IP S 
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 287 SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNN 346
               +L +    S N          +           +       V   S          
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 347 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFN 406
            +        +  + +L  LDL NN +YG +P     L  L  L++S N L G +P   N
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289

Query: 407 LSSLRRLYMHMNAFNGSIP 425
           L          N      P
Sbjct: 290 LQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 70.6 bits (171), Expect = 1e-13
 Identities = 58/311 (18%), Positives = 101/311 (32%), Gaps = 48/311 (15%)

Query: 382 GNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRS----SSLTVL 437
                +  LD+S   L    P   +L++L  L         ++ G +  +    + L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 438 DLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIP 497
            +     SG+IP ++++   L  L    N L G +P  +  L  L  +    N+ +G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 498 VCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMT 557
                                  +            + L       F   +         
Sbjct: 167 D-------------------SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207

Query: 558 KKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNL 617
               ++      +  T               ++G    +  L+L +N + G++PQ L+ L
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 618 KMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSG 677
           K + SL++S N+L G+I                        P  G    FD   Y  N  
Sbjct: 268 KFLHSLNVSFNNLCGEI------------------------PQGGNLQRFDVSAYANNKC 303

Query: 678 LCGPRINKSCT 688
           LCG  +  +CT
Sbjct: 304 LCGSPL-PACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.8 bits (169), Expect = 2e-13
 Identities = 55/268 (20%), Positives = 99/268 (36%), Gaps = 8/268 (2%)

Query: 238 SSKHDLLRIDISHNKFSG--QLPGNMGKILPELLSLNLSEN-GFEVRIPSSMSEMKRLES 294
           +  + +  +D+S         +P ++   LP L  L +         IP +++++ +L  
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 295 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE-VVFPNSTNLCWLYLNNNHFSGKI 353
           L ++  N SG +P         ++     +           +  NL  +  + N  SG I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 354 QDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRL 413
            D     + L      +                L F+D+S N L G     F      + 
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 414 YMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIP 473
                       G +  S +L  LDLR+N+  G++P  + +  +L  L +  N L G IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 474 NQLCHLSLLNILDLSYNKF--NGPIPVC 499
            Q  +L   ++   + NK     P+P C
Sbjct: 286 -QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.6 bits (166), Expect = 4e-13
 Identities = 46/257 (17%), Positives = 90/257 (35%), Gaps = 26/257 (10%)

Query: 93  SNLTHIKVLDLSSNQLTGNLQ--SVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVF 150
           +    +  LDLS   L       S +AN+  L +L +   N        ++   ++L   
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 151 KLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFP 210
            ++++ V     +F    +  +      N     LP  +    +L  I    N++ G  P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 211 SWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNK------------------ 252
                 +    ++ +  N L+G      +  +L  +D+S N                   
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 253 ----FSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPR 308
                S         +   L  L+L  N     +P  ++++K L SL++S NN  GE+P+
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 309 QFLSGCFSLSFLSLSDN 325
                       + ++N
Sbjct: 287 --GGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 1/126 (0%)

Query: 7   HSRINFRLCVQIIEHVWSPIIKKPQELWHKFFPKGSITDFSVEDSCRKTSGVPLTVFVNT 66
            +    RL  +I     +  +       +      S+   S +++ +         F   
Sbjct: 179 MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

Query: 67  GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 126
            +   K L  LDL  N +YG L   L+ L  +  L++S N L G +     N++  +  +
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSA 297

Query: 127 LDDNNF 132
             +N  
Sbjct: 298 YANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 176 NLRNCSLH-ALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNF 234
           +LRN  ++  LP  L     L  +++S N L G  P     N  + D     NN      
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCGS 307

Query: 235 QLPS 238
            LP+
Sbjct: 308 PLPA 311

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.0 bits (188), Expect = 7e-16
 Identities = 50/269 (18%), Positives = 97/269 (36%), Gaps = 14/269 (5%)

Query: 74  LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 133
              LDL  N +         NL ++  L L +N+++       A +  LE L L  N  +
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 134 GSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQL 193
                      +  ++    N + K+    F GL +  +  L         + +     +
Sbjct: 93  ---ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 194 -DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNK 252
             L +I ++   +  T P  L  +   L  L+L  N ++          + L        
Sbjct: 150 KKLSYIRIADTNIT-TIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 253 FSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSG-----ELP 307
               +        P L  L+L+ N    ++P  +++ K ++ + L +NN S        P
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 308 RQFLSGCFSLSFLSLSDNHLQGEVVFPNS 336
             + +   S S +SL  N +Q   + P++
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQYWEIQPST 293

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.4 bits (176), Expect = 2e-14
 Identities = 54/279 (19%), Positives = 92/279 (32%), Gaps = 38/279 (13%)

Query: 242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNN 301
           D   +D+ +NK +    G+    L  L +L L  N      P + + + +LE L LS N 
Sbjct: 32  DTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 302 FSGELPRQFLSGCFSLSFLSLSDNHLQGEV-------------------------VFPNS 336
              ELP +       L         ++  V                          F   
Sbjct: 91  LK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 337 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQ 396
             L ++ + + + +  I  GL    SL EL L  N +          L+ L  L +S N 
Sbjct: 150 KKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 397 LSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSG------SIPI 450
           +S     S   +   R     N     +PG L     + V+ L +N  S         P 
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 451 WINEFSYLGILLLRGNQLKGN--IPNQLCHLSLLNILDL 487
           +  + +    + L  N ++     P+    + +   + L
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 5e-14
 Identities = 49/300 (16%), Positives = 84/300 (28%), Gaps = 34/300 (11%)

Query: 336 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISEN 395
             +   L L NN  +           +L  L L NN +    P  F  L  L+ L +S+N
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 396 QLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRD--NQFSGSIPIWIN 453
           QL           +L+ L +H N             + + V++L     + SG       
Sbjct: 90  QLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 454 EFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAG 513
               L  + +    +   IP  L     L  L L  NK           +          
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL------- 197

Query: 514 SFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMT 573
              L  +   IS        +T  L E+                K            Y+ 
Sbjct: 198 -AKLGLSFNSISAVDNGSLANTPHLRELHLNNN-----------KLVKVPGGLADHKYIQ 245

Query: 574 GLDFSCNELTG------DIPSEIGSLSEIRALNLSHNFLSGS--IPQSLSNLKMIESLDL 625
            +    N ++         P      +    ++L  N +      P +   + +  ++ L
Sbjct: 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.5 bits (153), Expect = 2e-11
 Identities = 52/305 (17%), Positives = 92/305 (30%), Gaps = 38/305 (12%)

Query: 96  THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNS 155
               +LDL +N++T        N+K+L  L L +N                         
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK--------------------- 69

Query: 156 LVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQ 215
              I    F  L   +L+ L L    L  LP  +   L    +  +            L 
Sbjct: 70  ---ISPGAFAPLV--KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN 124

Query: 216 NNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSE 275
               ++       S             L  I I+    +    G    + P L  L+L  
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG----LPPSLTELHLDG 180

Query: 276 NGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPN 335
           N       +S+  +  L  L LS N+ S        +          ++  ++      +
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240

Query: 336 STNLCWLYLNNNHFSG------KIQDGLSKATSLLELDLSNNML-YGQI-PHWFGNLSGL 387
              +  +YL+NN+ S             +K  S   + L +N + Y +I P  F  +   
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300

Query: 388 QFLDI 392
             + +
Sbjct: 301 AAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.4 bits (132), Expect = 8e-09
 Identities = 43/254 (16%), Positives = 76/254 (29%), Gaps = 24/254 (9%)

Query: 423 SIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLL 482
            +P  L       +LDL++N+ +            L  L+L  N++    P     L  L
Sbjct: 24  KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 483 NILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVK 542
             L LS N+           +            V      ++        N  + +    
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQEL--------RVHENEITKVRKSVFNGLNQMIVVELGT 133

Query: 543 HFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLS 602
           +  K+SG     F             +  ++ +  +   +T  IP   G    +  L+L 
Sbjct: 134 NPLKSSGIENGAFQG-----------MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLD 179

Query: 603 HNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAG 662
            N ++     SL  L  +  L LS N +S      L     L   +++ N L        
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239

Query: 663 QFANFDEQNYGGNS 676
                       N+
Sbjct: 240 DHKYIQVVYLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.0 bits (131), Expect = 1e-08
 Identities = 51/276 (18%), Positives = 101/276 (36%), Gaps = 30/276 (10%)

Query: 387 LQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFS 445
              LD+  N+++      F NL +L  L +  N  +   PGA      L  L L  NQ  
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 446 GSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTL 505
                       L +      +++ ++ N L  + ++  L  +  K +G     F  +  
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQGMKK 151

Query: 506 WTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYK 565
            +  + A +         I+T  +    S  EL              ++     + ++  
Sbjct: 152 LSYIRIADT--------NITTIPQGLPPSLTELH-------------LDGNKITKVDAAS 190

Query: 566 GDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDL 625
              LN +  L  S N ++      + +   +R L+L++N L   +P  L++ K I+ + L
Sbjct: 191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 249

Query: 626 SHNDLSG------QIPPQLTELNFLSNFNVSYNHLS 655
            +N++S         P   T+    S  ++  N + 
Sbjct: 250 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.5 bits (127), Expect = 4e-08
 Identities = 39/262 (14%), Positives = 79/262 (30%), Gaps = 25/262 (9%)

Query: 431 SSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYN 490
              L V+   D      +P  +       +L L+ N++         +L  L+ L L  N
Sbjct: 9   QCHLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 65

Query: 491 KFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQ 550
           K +   P  FA +                             N   EL E         +
Sbjct: 66  KISKISPGAFAPLVKLE-------------------RLYLSKNQLKELPEKMPKTLQELR 106

Query: 551 RGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSI 610
                +TK R   + G     +  L  +  + +G        + ++  + ++   ++   
Sbjct: 107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 166

Query: 611 PQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQ 670
                +L     L L  N ++      L  LN L+   +S+N +S     +        +
Sbjct: 167 QGLPPSL---TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 223

Query: 671 NYGGNSGLCGPRINKSCTTVLE 692
            +  N+ L       +    ++
Sbjct: 224 LHLNNNKLVKVPGGLADHKYIQ 245

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 9e-05
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 13/146 (8%)

Query: 68  ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 127
              +KKL  + ++  N+         +LT    L L  N++T    + +  + +L  L L
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 128 DDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPS 187
             N+        SL N   L+   L+N+ +              ++ + L N ++ A+ S
Sbjct: 203 SFNSISA-VDNGSLANTPHLRELHLNNNKLVKVPGGLADH--KYIQVVYLHNNNISAIGS 259

Query: 188 -------FLLHQLDLRFIDLSHNKLQ 206
                  +   +     + L  N +Q
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (146), Expect = 2e-10
 Identities = 66/443 (14%), Positives = 119/443 (26%), Gaps = 23/443 (5%)

Query: 242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVR----IPSSMSEMKRLESLDL 297
           D+  +DI   + S      +  +L +   + L + G        I S++     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 298 SSNNFSGE----LPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKI 353
            SN         + +   +    +  LSL +  L G      S+ L  L           
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 354 QDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRL 413
             G +    L E  L       ++   + +LS      ++    +        +S+    
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 414 YMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGIL-LLRGNQLKGNI 472
              +      +  +  +  +L +        +      I           L  N+L    
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 473 PNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYY 532
             +LC   L     L                 L  + +A  S            +  A  
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 533 NSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGD-----IP 587
                L           +          + S       ++  L  S N L          
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 588 SEIGSLSEIRALNLSHNFLSG----SIPQSLSNLKMIESLDLSHNDLSGQIPPQLTE--- 640
                 S +R L L+   +S     S+  +L     +  LDLS+N L      QL E   
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 641 --LNFLSNFNVSYNHLSGPTPNA 661
                L    +   + S    + 
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (144), Expect = 4e-10
 Identities = 54/467 (11%), Positives = 121/467 (25%), Gaps = 37/467 (7%)

Query: 193 LDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGN-----FQLPSSKHDLLRID 247
           LD++ +D+   +L     + LL    +   + L +  L+                L  ++
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 248 ISHNKFSGQLPGNMGKILPE----LLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFS 303
           +  N+        + + L      +  L+L            +S   R        +   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 304 GELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSL 363
             L    L                        S   C    +        ++       +
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 364 LELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGS 423
            E  +       +          L+   ++ +          + +SLR L +  N     
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG-- 239

Query: 424 IPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLN 483
                            D   +   P  ++  S L  L +    +       LC +    
Sbjct: 240 -----------------DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 282

Query: 484 ILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKH 543
                 +     +    A +   TL +               T     + S++       
Sbjct: 283 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 342

Query: 544 FYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGD----IPSEIGSLSEIRAL 599
                    +E    +      G   + +  L  +  +++      + + + +   +R L
Sbjct: 343 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 402

Query: 600 NLSHNFLSGSIPQSLS-----NLKMIESLDLSHNDLSGQIPPQLTEL 641
           +LS+N L  +    L         ++E L L     S ++  +L  L
Sbjct: 403 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (129), Expect = 2e-08
 Identities = 61/442 (13%), Positives = 110/442 (24%), Gaps = 20/442 (4%)

Query: 74  LVELDLSKNNL-YGHLSPCLSNLTHIKVLDLSSNQLTG----NLQSVIANIKSLEYLSLD 128
           +  LD+    L     +  L  L   +V+ L    LT     ++ S +    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 129 DNNFEG----SFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHA 184
            N                   K+Q   L N  +              L  L   + S + 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 185 LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 244
                  QL    +     +L+     +   +    + L  +  +     +L  S +D+ 
Sbjct: 124 -LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 245 RIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSG 304
              +       +      + L        S+N  ++    +     R  +L  +     G
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 305 ELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLL 364
            +           S L        G            L    +     +           
Sbjct: 243 -MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 365 ELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSI 424
            L  +      Q+   +           S      +         +    +         
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 425 PGALRRSSSLTVLDLRDNQFSG----SIPIWINEFSYLGILLLRGNQLKGNIPNQLC--- 477
            G  +  S L VL L D   S     S+   +     L  L L  N L      QL    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 478 --HLSLLNILDLSYNKFNGPIP 497
                LL  L L    ++  + 
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 2e-07
 Identities = 52/431 (12%), Positives = 105/431 (24%), Gaps = 21/431 (4%)

Query: 71  LKKLVELDLSKNNL----YGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA-----NIKS 121
           L++   + L    L       +S  L     +  L+L SN+L       +          
Sbjct: 26  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 85

Query: 122 LEYLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCS 181
           ++ LSL +    G+           L   +  +    +  +    L    L     R   
Sbjct: 86  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 145

Query: 182 LHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKH 241
           L      L          +   K      +    +  +     L         QL + K 
Sbjct: 146 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 205

Query: 242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNN 301
           +   +   + +    +  +   +    L  N   +     +   +               
Sbjct: 206 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 265

Query: 302 FSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKAT 361
                    L             +    E+    +  LC   L        +       T
Sbjct: 266 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 325

Query: 362 SLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFN 421
           +      S+ +   +        +             G        S LR L++     +
Sbjct: 326 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL---GQPGSVLRVLWLADCDVS 382

Query: 422 G----SIPGALRRSSSLTVLDLRDNQFSGSIPIWI-----NEFSYLGILLLRGNQLKGNI 472
                S+   L  + SL  LDL +N    +  + +          L  L+L        +
Sbjct: 383 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 442

Query: 473 PNQLCHLSLLN 483
            ++L  L    
Sbjct: 443 EDRLQALEKDK 453

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 4e-10
 Identities = 46/243 (18%), Positives = 78/243 (32%), Gaps = 13/243 (5%)

Query: 238 SSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDL 297
           S     L ++      +  LP +   +  +   L+LSEN       +++    RL  L+L
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPD---LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 298 SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGL 357
                +       L    +L         L           L  L ++ N  +      L
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLL--GQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 358 SKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMH 416
                L EL L  N L    P        L+ L ++ N L+         L +L  L + 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 417 MNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPI-----WINEFSYLGILLLRGNQLKGN 471
            N+   +IP     S  L    L  N +  +  I     W+ + +    +  +G  +K  
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAM 239

Query: 472 IPN 474
             N
Sbjct: 240 TSN 242

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 8e-09
 Identities = 42/230 (18%), Positives = 62/230 (26%), Gaps = 31/230 (13%)

Query: 265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 324
           +   L +N  +      +P  +   K    L LS N          L     L+ L+L  
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDR 64

Query: 325 NHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNL 384
             L    V      L  L   +++    +        +L  LD+S N L          L
Sbjct: 65  AELTKLQVDGTLPVLGTLD-LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 385 SGLQFLDISENQLSGSVPSSFNLSSLRRLYMH-MNAFNGSIPGALRRSSSLTVLDLRDNQ 443
             LQ L +  N+L    P     +          N       G L    +L  L L++N 
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 444 FSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFN 493
                                       IP       LL    L  N + 
Sbjct: 184 LY-------------------------TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 45/235 (19%), Positives = 74/235 (31%), Gaps = 33/235 (14%)

Query: 68  ICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 127
           + ++   +E++  K NL   L P L       +L LS N L     + +     L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 128 DDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPS 187
           D           +L                              L  L+L +  L +LP 
Sbjct: 63  DRAELTKLQVDGTLPV----------------------------LGTLDLSHNQLQSLPL 94

Query: 188 FLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRID 247
                  L  +D+S N+L       L       +     N   +    L +    L ++ 
Sbjct: 95  LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154

Query: 248 ISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNF 302
           +++N  +    G +   L  L +L L EN     IP        L    L  N +
Sbjct: 155 LANNNLTELPAGLLNG-LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 43/173 (24%), Positives = 56/173 (32%), Gaps = 2/173 (1%)

Query: 336 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISEN 395
             +   L+L+ N         L   T L +L+L             G L  L  LD+S N
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA--ELTKLQVDGTLPVLGTLDLSHN 87

Query: 396 QLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEF 455
           QL         L +L  L +  N       GALR    L  L L+ N+     P  +   
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 456 SYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTL 508
             L  L L  N L       L  L  L+ L L  N         F +  L   
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA 200

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 33/224 (14%), Positives = 59/224 (26%), Gaps = 25/224 (11%)

Query: 429 RRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLS 488
            + +S   ++      + ++P  +       IL L  N L       L   + L  L+L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 489 YNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKAS 548
             +           V L TL  +           +          S   L+ +       
Sbjct: 64  RAELTKLQVDGTLPV-LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 549 GQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSG 608
                E   K          L   T      +                     ++N L+ 
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSL--------------------ANNNLTE 162

Query: 609 SIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYN 652
                L+ L+ +++L L  N L   IP      + L    +  N
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 35/275 (12%), Positives = 81/275 (29%), Gaps = 15/275 (5%)

Query: 366 LDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNG-SI 424
           LDL+   L+  +     +  G+       + +   +   F+   ++ + +  +     ++
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 425 PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNI 484
            G L + S L  L L   + S  I   + + S L  L L G         Q    S   +
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 485 LDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHF 544
            +L+ +                         +         ++          L  +   
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 545 YKASGQRGIEFMTKKRYESYKGDILNYMTGLDFS-CNELTGDIPSEIGSLSEIRALNLSH 603
                +        +          NY+  L  S C ++  +   E+G +  ++ L +  
Sbjct: 184 DSVMLKNDCFQEFFQL---------NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234

Query: 604 NFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQL 638
               G++      L     L ++ +  +    P +
Sbjct: 235 IVPDGTLQLLKEALP---HLQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 32/287 (11%), Positives = 79/287 (27%), Gaps = 17/287 (5%)

Query: 155 SLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLL 214
           +   +  +    L    + A       +    +       ++ +DLS++ ++ +    +L
Sbjct: 8   TGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL 67

Query: 215 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLS 274
              +KL  L L    LS    + ++      +   +            + L    S    
Sbjct: 68  SQCSKLQNLSLEGLRLSDP--IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 125

Query: 275 ENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFP 334
            N       +       +        + S  + +  LSG       S          V  
Sbjct: 126 LNLSWCFDFTEKHVQVAV-------AHVSETITQLNLSGYRKNLQKSDLSTL-----VRR 173

Query: 335 NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSN-NMLYGQIPHWFGNLSGLQFLDIS 393
               +     ++            +   L  L LS    +  +     G +  L+ L + 
Sbjct: 174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233

Query: 394 ENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLR 440
                G++       +L  L ++ + F       +    +  +  ++
Sbjct: 234 GIVPDGTLQLL--KEALPHLQINCSHFTTIARPTIGNKKNQEIWGIK 278

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 40/277 (14%), Positives = 81/277 (29%), Gaps = 16/277 (5%)

Query: 245 RIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSG 304
            +D++       + G +  +   +++     +  +  +    S   R++ +DLS++    
Sbjct: 4   TLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEV 60

Query: 305 ELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATS 362
                 LS C  L  LSL    L   +V     ++NL  L L+      +       ++ 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 363 LLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNA--- 419
               +L+ +  +                 I++  LSG   +         +    N    
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 420 -------FNGSIPGALRRSSSLTVLDLRD-NQFSGSIPIWINEFSYLGILLLRGNQLKGN 471
                            + + L  L L           + + E   L  L + G    G 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 472 IPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTL 508
           +      L  L I    +     P      N  +W +
Sbjct: 241 LQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 573 TGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG 632
             LD +   L  D+   + S   + A     +F+   + +  S  + ++ +DLS++ +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 633 -QIPPQLTELNFLSNFNVSYNHLSGPTPNA 661
             +   L++ + L N ++    LS P  N 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNT 90

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 39/239 (16%), Positives = 78/239 (32%), Gaps = 20/239 (8%)

Query: 72  KKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGN-LQSVIANIKSLEYLSLDDN 130
           + ++     ++ +   L+   S    ++ +DLS++ +  + L  +++    L+ LSL+  
Sbjct: 23  QGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 131 NFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLL 190
                   N+L  +S L   +L+ S     +E            L+  N S         
Sbjct: 82  RLSDP-IVNTLAKNSNLV--RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC------- 131

Query: 191 HQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISH 250
                   D +   +Q               + Y  N   S    L     +L+ +D+S 
Sbjct: 132 -------FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 184

Query: 251 NKFSGQLPGNMGKILPELLSLNLSE-NGFEVRIPSSMSEMKRLESLDLSSNNFSGELPR 308
           +             L  L  L+LS            + E+  L++L +      G L  
Sbjct: 185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL 243

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.0 bits (120), Expect = 8e-08
 Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 8/177 (4%)

Query: 270 SLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG 329
           +++ +  G +  IP  +        L L+ N                L  L L  N L G
Sbjct: 12  TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 330 EVVFPNSTNLCW--LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGL 387
                         L L  N               L  L+L +N +   +P  F +L+ L
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 388 QFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQF 444
             L+++ N  + +   ++    LR+  ++  A     P  +R    + + DL  ++F
Sbjct: 129 TSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVR---DVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 36/184 (19%), Positives = 63/184 (34%), Gaps = 10/184 (5%)

Query: 294 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFP---NSTNLCWLYLNNNHFS 350
           ++D +      E+PR         + L L+DN L             +L  L L  N  +
Sbjct: 12  TVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 351 GKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSL 410
           G   +    A+ + EL L  N +       F  L  L+ L++ +NQ+S  +P SF   + 
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 411 RRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKG 470
                  +            +  L    L         P   ++   + I  L  ++ K 
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFKC 184

Query: 471 NIPN 474
           +  N
Sbjct: 185 SSEN 188

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 7/165 (4%)

Query: 242 DLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNN 301
               + ++ N+        +   LP L      +      I  +  E            N
Sbjct: 30  HTTELLLNDNELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 302 FSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWLYLNNNHFSGKIQDGLSK 359
              E+  +   G   L  L+L DN +       F +  +L  L L +N F+         
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC-NCHLAWF 147

Query: 360 ATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSS 404
           A  L +  L+        P     +  +Q  D+  ++   S  +S
Sbjct: 148 AEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEFKCSSENS 189

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 54/343 (15%), Positives = 96/343 (27%), Gaps = 27/343 (7%)

Query: 69  CELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 128
           C  ++  EL+L+   L   L     +L     L  S N LT     +    +SL+ L +D
Sbjct: 35  CLDRQAHELELNNLGL-SSLPELPPHLES---LVASCNSLT----ELPELPQSLKSLLVD 86

Query: 129 DNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSF 188
           +NN +       L  +  +              +            L + +   ++L   
Sbjct: 87  NNNLKALSDLPPLLEYLGVS-----------NNQLEKLPELQNSSFLKIIDVDNNSLKKL 135

Query: 189 LLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDI 248
                 L FI   +N+L+       L   T +         L        S      I  
Sbjct: 136 PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE 195

Query: 249 SHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPR 308
              +               LL            +    + +  L  L  S          
Sbjct: 196 ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 255

Query: 309 QFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL 368
                    +   L+ +  +   +     +L  L ++NN    ++         L  L  
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIA 311

Query: 369 SNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLR 411
           S N L  ++P    NL   + L +  N L        ++  LR
Sbjct: 312 SFNHL-AEVPELPQNL---KQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.5 bits (111), Expect = 4e-06
 Identities = 50/313 (15%), Positives = 93/313 (29%), Gaps = 29/313 (9%)

Query: 361 TSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAF 420
               EL+L+N  L   +P    +L   + L  S N L+       +L SL     ++ A 
Sbjct: 38  RQAHELELNNLGL-SSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93

Query: 421 NGSIPGALRRSSSLTV---------LDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGN 471
           +   P       S                      +  +         +  +     +  
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 472 IPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAY 531
              +L +L  L  +    N       +  +  ++             +    ++T +   
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 532 YNS--------TLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELT 583
                      +LE   V+  Y        + +T           L+ +    +  N  +
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 584 GDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNF 643
            +I S       +  LN+S+N L   +P     L   E L  S N L+ ++P     L  
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNLKQ 328

Query: 644 LSNFNVSYNHLSG 656
           L   +V YN L  
Sbjct: 329 L---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 7e-06
 Identities = 54/324 (16%), Positives = 89/324 (27%), Gaps = 24/324 (7%)

Query: 171 QLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSL 230
           Q   L L N  L +LP    H   L  +  S N L    P         L +L + NN+L
Sbjct: 39  QAHELELNNLGLSSLPELPPH---LESLVASCNSLT-ELPELP----QSLKSLLVDNNNL 90

Query: 231 SGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMK 290
                LP            +   S      + ++        +  +   ++    +    
Sbjct: 91  KALSDLPPLLE--------YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL 142

Query: 291 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFS 350
              +   +      EL              SL         +         L       +
Sbjct: 143 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQN 202

Query: 351 GKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSL 410
                 +    +LL+           +      L+ L  L  S   L  S      LS L
Sbjct: 203 LPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL 262

Query: 411 RRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKG 470
                ++NA +  I        SL  L++ +N+    +P        L  L+   N L  
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLA- 317

Query: 471 NIPNQLCHLSLLNILDLSYNKFNG 494
            +P    +L     L + YN    
Sbjct: 318 EVPELPQNLK---QLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 54/356 (15%), Positives = 104/356 (29%), Gaps = 44/356 (12%)

Query: 290 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHF 349
           ++   L+L++   S  LP         L  L  S N L    +     +L  L ++NN+ 
Sbjct: 38  RQAHELELNNLGLS-SLP----ELPPHLESLVASCNSL--TELPELPQSLKSLLVDNNNL 90

Query: 350 SGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSS 409
                  LS    LLE    +N    ++P    +           + L      + +L  
Sbjct: 91  -----KALSDLPPLLEYLGVSNNQLEKLPELQNS-----------SFLKIIDVDNNSLKK 134

Query: 410 LRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLK 469
           L  L   +                  +  L       +    + +       ++ GN + 
Sbjct: 135 LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 194

Query: 470 GNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFE 529
             +P       L  I   +      P                     L ++   +     
Sbjct: 195 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 254

Query: 530 AYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSE 589
            +   +     + +   +S +                 +   +  L+ S N+L  ++P+ 
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCD-----------LPPSLEELNVSNNKLI-ELPAL 302

Query: 590 IGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSG--QIPPQLTELNF 643
              L     L  S N L+  +P+   NLK    L + +N L     IP  + +L  
Sbjct: 303 PPRLER---LIASFNHLA-EVPELPQNLK---QLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 48/310 (15%), Positives = 84/310 (27%), Gaps = 26/310 (8%)

Query: 163 EFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSW-LLQNNTKLD 221
             P LP   L++L     SL  LP        L+ + + +N L+       LL+     +
Sbjct: 52  SLPELPP-HLESLVASCNSLTELPELPQS---LKSLLVDNNNLKALSDLPPLLEYLGVSN 107

Query: 222 TLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVR 281
                   L  +  L     D   +    +          G    E L    +       
Sbjct: 108 NQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAI 167

Query: 282 IPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCW 341
              + S  K  +      +  +G    + L    +L FL+            P+      
Sbjct: 168 YADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLE 227

Query: 342 LYLNNNHFSGKIQDGLSKATSL-------------LELDLSNNMLYGQIPHWFGNLSGLQ 388
                +++   + +     T L                    N    +I         L+
Sbjct: 228 ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE 287

Query: 389 FLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSI 448
            L++S N+L   +P+      L RL    N     +P       +L  L +  N      
Sbjct: 288 ELNVSNNKLI-ELPAL--PPRLERLIASFNHLA-EVPELP---QNLKQLHVEYNPLR-EF 339

Query: 449 PIWINEFSYL 458
           P        L
Sbjct: 340 PDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 8/101 (7%)

Query: 34  WHKFFPKGSITDFSVEDSCRKTSGVPLTVFVNTGICELKKLVELDLSKNNLYGHLSPCLS 93
                   +I     E           +  + +       L EL++S N L   L     
Sbjct: 246 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPP 304

Query: 94  NLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEG 134
            L     L  S N L      V    ++L+ L ++ N    
Sbjct: 305 RLER---LIASFNHLA----EVPELPQNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 13/98 (13%)

Query: 250 HNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQ 309
           +   S     ++  + P L  LN+S N     +P+      RLE L  S N+ + E+P  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVP-- 320

Query: 310 FLSGCFSLSFLSLSDNHLQGEVVFPNS-TNLCWLYLNN 346
                 +L  L +  N L+    FP+   ++  L +N+
Sbjct: 321 --ELPQNLKQLHVEYNPLRE---FPDIPESVEDLRMNS 353

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 366 LDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIP 425
           L L++  L   +      L  +  LD+S N+L    P+   L  L  L    NA      
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 426 GALRRSSSLTVLDLRDNQF-SGSIPIWINEFSYLGILLLRGNQLKG 470
                   L  L L +N+    +    +     L +L L+GN L  
Sbjct: 61  V--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 8e-06
 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 7/118 (5%)

Query: 295 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGKI 353
           L L+  + +  L    L     ++ L LS N L+           L  L    +  + + 
Sbjct: 3   LHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVL--QASDNALEN 57

Query: 354 QDGLSKATSLLELDLSNNML-YGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSL 410
            DG++    L EL L NN L          +   L  L++  N L         L+ +
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 7/111 (6%)

Query: 196 RFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSG 255
           R + L+H  L        L+    +  L L +N L       ++   L  +  S N    
Sbjct: 1   RVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 256 QLPGNMGKILPELLSLNLSENGFE-VRIPSSMSEMKRLESLDLSSNNFSGE 305
                     P L  L L  N  +       +    RL  L+L  N+   E
Sbjct: 58  VDGVANL---PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 222 TLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVR 281
            L+L +  L+    L      +  +D+SHN+     P      L  L  L + +      
Sbjct: 2   VLHLAHKDLTVLCHLEQLLL-VTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNAL 55

Query: 282 I-PSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE 330
                ++ + RL+ L L +N        Q L  C  L  L+L  N L  E
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 6/121 (4%)

Query: 124 YLSLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLH 183
            L L   +         L+    +    LS++ ++        L    L+ L   + +L 
Sbjct: 2   VLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALPPALAAL--RCLEVLQASDNALE 56

Query: 184 ALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 243
            +     +   L+ + L +N+LQ +     L +  +L  L L  NSL     +     ++
Sbjct: 57  NVDGVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 244 L 244
           L
Sbjct: 116 L 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 10/114 (8%)

Query: 77  LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSF 136
           L L+  +L   +   L  L  +  LDLS N+L     +    + +L  L +   +     
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALE 56

Query: 137 SFNSLKNHSKLQVFKLSNSLVK--IETEEFPGLPEYQLKALNLRNCSLHALPSF 188
           + + + N  +LQ   L N+ ++     +     P  +L  LNL+  SL      
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCP--RLVLLNLQGNSLCQEEGI 108

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 24/104 (23%)

Query: 575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIP---------------------QS 613
           L  +  +LT  +   +  L  +  L+LSHN L    P                       
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 614 LSNLKMIESLDLSHNDL-SGQIPPQLTELNFLSNFNVSYNHLSG 656
           ++NL  ++ L L +N L        L     L   N+  N L  
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.4 bits (108), Expect = 7e-06
 Identities = 49/357 (13%), Positives = 86/357 (24%), Gaps = 39/357 (10%)

Query: 70  ELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGN----LQSVIANIKSLEYL 125
           E K L    ++  +     +  L     +K + LS N +       L   IA+ K LE  
Sbjct: 6   EGKSLKLDAITTEDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 126 SLDDNNFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHAL 185
              D                 LQ       L  +   +    P  Q   ++  +      
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 186 PSFL-LHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 244
             +L  + L  +        LQ    +   +N   L ++    N L        +K    
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 245 RIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSG 304
              +   K         G     L  L   +    + +  +                   
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH------------LGS 232

Query: 305 ELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLL 364
                 L    +L  L L+D  L              L                +   L 
Sbjct: 233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL----------------ENIGLQ 276

Query: 365 ELDLSNNMLYGQIPHW-----FGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMH 416
            L L  N +               +  L FL+++ N+ S        +  +      
Sbjct: 277 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 333

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 36/341 (10%), Positives = 82/341 (24%), Gaps = 37/341 (10%)

Query: 316 SLSFLSLSDNHLQGEV-VFPNSTNLCWLYLNNNHFSGK----IQDGLSKATSLLELDLSN 370
           SL   +++    +    V     ++  + L+ N    +    + + ++    L   + S+
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 371 NMLY---GQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGA 427
                   +IP     L                  +      L  + +  NAF  +    
Sbjct: 69  IFTGRVKDEIPEALRLLL----------------QALLKCPKLHTVRLSDNAFGPTAQEP 112

Query: 428 LRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDL 487
           L    S           +  +           +  L  N+   N P     +   N L+ 
Sbjct: 113 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE- 171

Query: 488 SYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKA 547
                           +   L                    E                  
Sbjct: 172 ----NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 227

Query: 548 SGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLS 607
           +           +      ++      L         D  S+      ++ L L +N + 
Sbjct: 228 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK-LENIGLQTLRLQYNEIE 286

Query: 608 GSIPQSL-----SNLKMIESLDLSHNDLS--GQIPPQLTEL 641
               ++L       +  +  L+L+ N  S    +  ++ E+
Sbjct: 287 LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 9e-04
 Identities = 31/327 (9%), Positives = 76/327 (23%), Gaps = 37/327 (11%)

Query: 386 GLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNG----SIPGALRRSSSLTVLDLRD 441
            L+   I+               S++ + +  N         +   +     L + +  D
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 442 NQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQL----------------------CHL 479
                           L   LL+  +L     +                         +L
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 480 SLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELS 539
               +   +  K    +     N                   +  S +  A    +  L 
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 540 EVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRAL 599
                 +   +            +Y  ++       +   +  +  +   + S   +R L
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 600 NLSHNFLSGSIPQSLSN------LKMIESLDLSHNDLSGQIPPQLTE-----LNFLSNFN 648
            L+   LS     ++ +         +++L L +N++       L       +  L    
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 649 VSYNHLSGPTPNAGQFANFDEQNYGGN 675
           ++ N  S       +          G 
Sbjct: 309 LNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 11/134 (8%)

Query: 339 LCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLS 398
              L L            L      + L+  ++M    +     N+  L  L++S N+L 
Sbjct: 24  QQALDLKGLRSD----PDLVAQNIDVVLNRRSSMA-ATLRIIEENIPELLSLNLSNNRLY 78

Query: 399 GSVPSSF---NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEF 455
                S       +L+ L +  N           +   L  L L  N  S +     ++ 
Sbjct: 79  RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR---DQS 135

Query: 456 SYLGILLLRGNQLK 469
           +Y+  +  R  +L 
Sbjct: 136 TYISAIRERFPKLL 149

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 20/228 (8%)

Query: 71  LKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 130
           L   +++   K+N+   ++   ++L  I  L      +T      +  + +L  L L DN
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73

Query: 131 NFEGSFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLL 190
                    +L   ++L++       V                                L
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS--TQITDVTPLAGLSNL 131

Query: 191 HQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISH 250
             L L    +++        +    +                     ++   L  +    
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD---------LTPLANLSKLTTLKADD 182

Query: 251 NKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLS 298
           NK S   P      LP L+ ++L  N      P  ++    L  + L+
Sbjct: 183 NKISDISPLAS---LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 29/219 (13%), Positives = 63/219 (28%), Gaps = 15/219 (6%)

Query: 432 SSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNK 491
           ++   +    +  + ++     +   +  L   G  +   I   + +L+ L  L+L  N 
Sbjct: 19  ANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDN- 73

Query: 492 FNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQR 551
               I        L  + +   S    +    I+                     A    
Sbjct: 74  ---QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 552 GIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIP 611
                      +    +         S         + + +LS++  L    N +S   P
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190

Query: 612 QSLSNLKMIESLDLSHNDLSGQIP----PQLTELNFLSN 646
             L++L  +  + L +N +S   P      L  +  L+N
Sbjct: 191 --LASLPNLIEVHLKNNQISDVSPLANTSNLFIVT-LTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 299 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLS 358
           S   +       L+    L+ L   DN +       +  NL  ++L NN  S      L+
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS--PLA 214

Query: 359 KATSLLELDLSN 370
             ++L  + L+N
Sbjct: 215 NTSNLFIVTLTN 226

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 27/227 (11%), Positives = 69/227 (30%), Gaps = 5/227 (2%)

Query: 76  ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGS 135
                ++ +    S    N      L     +L    +   +    LE + +  N+    
Sbjct: 12  VFLCQESKVTEIPSDLPRNAIE---LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 136 FSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALP--SFLLHQL 193
              +   N  KL   ++  +   +            L+ L + N  +  LP    +    
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 194 DLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKF 253
            +      +  +     +  +  + +   L+L  N +        +   L  +++S N  
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188

Query: 254 SGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSN 300
             +LP ++       + L++S           +  +K+L +    + 
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 26/226 (11%), Positives = 60/226 (26%), Gaps = 6/226 (2%)

Query: 175 LNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWL--LQNNTKLDTLYLLNNSLSG 232
              +   +  +PS L    +   +     KL+           +  K++        +  
Sbjct: 13  FLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 70

Query: 233 NFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRL 292
                +            N      P     +      L  +     +     +  ++++
Sbjct: 71  ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 130

Query: 293 ESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPN--STNLCWLYLNNNHFS 350
                 + N        F+   F    L L+ N +Q         +        +NN+  
Sbjct: 131 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE 190

Query: 351 GKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQ 396
               D    A+  + LD+S   ++    +   NL  L+       +
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 23/224 (10%), Positives = 45/224 (20%), Gaps = 15/224 (6%)

Query: 423 SIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLL 482
            IP  L    +   L     +         + F  L  + +  N +   I   +      
Sbjct: 22  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 483 NILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVK 542
                     N       A   L  L     S    +    +                + 
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 543 HFYKASGQRG----------IEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGS 592
                               +     +   +   +            N L          
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 593 LSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPP 636
            S    L++S   +       L NLK + +    +     ++P 
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL---KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 23/230 (10%), Positives = 51/230 (22%), Gaps = 18/230 (7%)

Query: 433 SLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKF 492
           S  V   ++++ +  IP  +        L     +L+            L  +++S N  
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 493 NGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYN----------STLELSEVK 542
              I     +                      + +                   ++ ++ 
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 543 HFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLS 602
              K                +    +      L  + N +                    
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 603 HNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPP----QLTELNFLSNFN 648
           +N L                LD+S   +   +P      L +L   S +N
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYN 234

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 18/138 (13%), Positives = 38/138 (27%), Gaps = 3/138 (2%)

Query: 270 SLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG 329
            L  + +G  +     +   + L  L + +      L  + L G   L  L++  + L+ 
Sbjct: 12  GLRCTRDGA-LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 330 EVVF--PNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGL 387
                   +  L  L L+ N         +   +    +   N +       W       
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEE 130

Query: 388 QFLDISENQLSGSVPSSF 405
               + E +L        
Sbjct: 131 GLGGVPEQKLQCHGQGPL 148

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 2/112 (1%)

Query: 573 TGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIP-QSLSNLKMIESLDLSHNDLS 631
           +GL  + +    D    +     +  L + +      +  + L  L  + +L +  + L 
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 632 GQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNSGLCGPRI 683
              P        LS  N+S+N L   +    Q  +  E    GN   C   +
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 8e-04
 Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 46/192 (23%)

Query: 265 LPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 324
             E +  NL +    V    + +E+  ++ +  ++++       Q+L    +++ L L+ 
Sbjct: 23  FAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLP---NVTKLFLNG 77

Query: 325 NHLQGEVVFPNSTNLCWLYL--------------------NNNHFSGKIQDGLSKATSLL 364
           N L       N  NL WL+L                    +  H      +GL     L 
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 365 ELDLSNNMLYGQIPHW--------------------FGNLSGLQFLDISENQLSGSVPSS 404
            L L NN +                              L+ LQ L +S+N +S  + + 
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLRAL 196

Query: 405 FNLSSLRRLYMH 416
             L +L  L + 
Sbjct: 197 AGLKNLDVLELF 208

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 89  SPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKN 143
           +   +N    + LDL   ++   ++++ A +   + +   DN       F  L+ 
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRR 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	764
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.18
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.17
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.07
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.03
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.54
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.42
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.05
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.82

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=4.5e-32  Score=281.39  Aligned_cols=257  Identities=34%  Similarity=0.569  Sum_probs=215.3

Q ss_pred             CCCEEeCcCCccCC--CccccccCCCCCCEEECcC-CCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEE
Q 045580          362 SLLELDLSNNMLYG--QIPHWFGNLSGLQFLDISE-NQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVL  437 (764)
Q Consensus       362 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  437 (764)
                      +++.|+|++|.+.+  .+|..++++++|++|+|++ |.++|.+|..+ ++++|++|++++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            56666666666665  3566777777777777765 66776666666 67777777777777777777778888888888


Q ss_pred             EccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCC-CEEeCCCCcCcCCcChhhhcchhhcccccCCccc
Q 045580          438 DLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLL-NILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFV  516 (764)
Q Consensus       438 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~  516 (764)
                      ++++|.+.+.+|..+..++.++++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.++             
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-------------  197 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-------------  197 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-------------
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-------------
Confidence            888888888888888889999999999999988888888887776 889999999988777665432             


Q ss_pred             cccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCcccc
Q 045580          517 LWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEI  596 (764)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L  596 (764)
                                                                            ....++++++...|.+|..++.++++
T Consensus       198 ------------------------------------------------------~~~~l~l~~~~~~~~~~~~~~~~~~l  223 (313)
T d1ogqa_         198 ------------------------------------------------------NLAFVDLSRNMLEGDASVLFGSDKNT  223 (313)
T ss_dssp             ------------------------------------------------------CCSEEECCSSEEEECCGGGCCTTSCC
T ss_pred             ------------------------------------------------------cccccccccccccccccccccccccc
Confidence                                                                  24468999999999999999999999


Q ss_pred             ceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCCCCCCCCCccccCCCC
Q 045580          597 RALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNAGQFANFDEQNYGGNS  676 (764)
Q Consensus       597 ~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~gn~  676 (764)
                      +.+++++|.+++.+| .++.+++|+.|||++|+++|.+|+.+.++++|++|||++|+|+|.+|+.+.+.+++...+.||+
T Consensus       224 ~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         224 QKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             ccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence            999999999997765 6889999999999999999999999999999999999999999999998889999999999999


Q ss_pred             CCCCCCCCCCC
Q 045580          677 GLCGPRINKSC  687 (764)
Q Consensus       677 ~lc~~~~~~~c  687 (764)
                      .+||.|++ .|
T Consensus       303 ~l~g~plp-~c  312 (313)
T d1ogqa_         303 CLCGSPLP-AC  312 (313)
T ss_dssp             EEESTTSS-CC
T ss_pred             cccCCCCC-CC
Confidence            99998864 55

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1.6e-30  Score=269.54  Aligned_cols=253  Identities=29%  Similarity=0.464  Sum_probs=226.3

Q ss_pred             CCceEEcccccCCC--cccccccCCCCCCEEeCcC-CccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEE
Q 045580          338 NLCWLYLNNNHFSG--KIQDGLSKATSLLELDLSN-NMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRL  413 (764)
Q Consensus       338 ~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L  413 (764)
                      +++.|+|+++.+++  .+|..++++++|++|+|++ |.++|.+|..|+++++|++|+|++|++.+..+..+ .+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            57788888888876  4788999999999999986 88999999999999999999999999999888877 88999999


Q ss_pred             eccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCc-cEEEccCCcCCccCCccccCCCCCCEEeCCCCcC
Q 045580          414 YMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYL-GILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKF  492 (764)
Q Consensus       414 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  492 (764)
                      +++.|.+.+.+|..+..++.++.+++++|.+++.+|..+..+..+ +.+++++|++++..|..+..+.. ..++++++.+
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            999999999999999999999999999999999999999888876 89999999999999988887755 4799999999


Q ss_pred             cCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccc
Q 045580          493 NGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYM  572 (764)
Q Consensus       493 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  572 (764)
                      .|.+|..+..                                                                  ++.+
T Consensus       210 ~~~~~~~~~~------------------------------------------------------------------~~~l  223 (313)
T d1ogqa_         210 EGDASVLFGS------------------------------------------------------------------DKNT  223 (313)
T ss_dssp             EECCGGGCCT------------------------------------------------------------------TSCC
T ss_pred             cccccccccc------------------------------------------------------------------cccc
Confidence            8887765543                                                                  3478


Q ss_pred             cEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCC
Q 045580          573 TGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYN  652 (764)
Q Consensus       573 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  652 (764)
                      +.+++++|.+++.+| .++.+++|+.|+|++|+++|.+|+.++++++|++|||++|+++|.+|+ +..+++|+.+++++|
T Consensus       224 ~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         224 QKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN  301 (313)
T ss_dssp             SEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSS
T ss_pred             ccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCC
Confidence            899999999997765 689999999999999999999999999999999999999999999995 578999999999999


Q ss_pred             c-cccC-CC
Q 045580          653 H-LSGP-TP  659 (764)
Q Consensus       653 ~-l~g~-~p  659 (764)
                      + ++|. +|
T Consensus       302 ~~l~g~plp  310 (313)
T d1ogqa_         302 KCLCGSPLP  310 (313)
T ss_dssp             SEEESTTSS
T ss_pred             ccccCCCCC
Confidence            7 5663 44

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=5.1e-26  Score=242.86  Aligned_cols=355  Identities=24%  Similarity=0.298  Sum_probs=237.3

Q ss_pred             ccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCC
Q 045580          200 LSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFE  279 (764)
Q Consensus       200 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~  279 (764)
                      ++.+.+++.+..+   .+.+|++|+++++.++.. .....+++|++|++++|+++ .++. + ..+++|++|++++|++.
T Consensus        29 l~~~~~~~~~~~~---~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~-~l~~-l-~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          29 LGKTNVTDTVSQT---DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             TTCSSTTSEECHH---HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCC
T ss_pred             hCCCCCCCccCHH---HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCC-CCcc-c-cCCcccccccccccccc
Confidence            3444444433332   344566666666655532 12234556666666666665 4443 3 33778888888888776


Q ss_pred             ccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccC
Q 045580          280 VRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSK  359 (764)
Q Consensus       280 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  359 (764)
                      +..  .++.+++|+.|+++++.+.+ ++..  .....+.......+.+............+........   .....+..
T Consensus       102 ~i~--~l~~l~~L~~L~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  173 (384)
T d2omza2         102 DIT--PLANLTNLTGLTLFNNQITD-IDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV---TDLKPLAN  173 (384)
T ss_dssp             CCG--GGTTCTTCCEEECCSSCCCC-CGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC---CCCGGGTT
T ss_pred             ccc--cccccccccccccccccccc-cccc--ccccccccccccccccccccccccccccccccccccc---chhhhhcc
Confidence            432  37778888888888887763 3322  3455666777666665543322222222221111111   11223444


Q ss_pred             CCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEc
Q 045580          360 ATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDL  439 (764)
Q Consensus       360 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  439 (764)
                      ...........|...  ....+..+++++.+++++|.+++..+ ...+++|+.|++++|.++..  ..+..+++|+.|++
T Consensus       174 ~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l  248 (384)
T d2omza2         174 LTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL  248 (384)
T ss_dssp             CTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             ccccccccccccccc--cccccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCc--chhhcccccchhcc
Confidence            555555666665543  34556778888888888888886544 23567888888888888743  35778889999999


Q ss_pred             cCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCcccccc
Q 045580          440 RDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWE  519 (764)
Q Consensus       440 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~  519 (764)
                      ++|++++..+  ++.+++|++|++++|++++..  .+..++.++.++++.|.+++..  .+                   
T Consensus       249 ~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~-------------------  303 (384)
T d2omza2         249 ANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PI-------------------  303 (384)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GG-------------------
T ss_pred             ccCccCCCCc--ccccccCCEeeccCcccCCCC--cccccccccccccccccccccc--cc-------------------
Confidence            9998886543  777889999999999888543  3677888899999888876421  11                   


Q ss_pred             ccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCcccccee
Q 045580          520 TTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRAL  599 (764)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L  599 (764)
                                                                     ..++.++.|++++|++++..  .+..+++|+.|
T Consensus       304 -----------------------------------------------~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L  334 (384)
T d2omza2         304 -----------------------------------------------SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRL  334 (384)
T ss_dssp             -----------------------------------------------GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEE
T ss_pred             -----------------------------------------------chhcccCeEECCCCCCCCCc--ccccCCCCCEE
Confidence                                                           11457889999999998643  38899999999


Q ss_pred             cccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccCC
Q 045580          600 NLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSYN  652 (764)
Q Consensus       600 ~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  652 (764)
                      ++++|++++ +| .++++++|++||+++|++++.+|  +.++++|+.|++++|
T Consensus       335 ~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         335 FFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999999984 44 68999999999999999997655  889999999999988

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=8.8e-26  Score=241.03  Aligned_cols=343  Identities=24%  Similarity=0.263  Sum_probs=199.0

Q ss_pred             cCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCCCc
Q 045580           69 CELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSKLQ  148 (764)
Q Consensus        69 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~  148 (764)
                      ..+.+|++|+++++.|+..  +.++.+++|++|+|++|++++..+  ++++++|++|++++|++.+. +  .++++++|+
T Consensus        41 ~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i-~--~l~~l~~L~  113 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T--PLANLTNLT  113 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G--GGTTCTTCC
T ss_pred             HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccccc-c--ccccccccc
Confidence            3567899999999988854  468889999999999999986543  88999999999999988743 2  366777777


Q ss_pred             EEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCccHhhhCCCCccEEEccCCCCCCccchHHhhcCCCCCEEEccCC
Q 045580          149 VFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNN  228 (764)
Q Consensus       149 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n  228 (764)
                      .|+++++....                         ++. ......+..+....|.+....+. ................
T Consensus       114 ~L~~~~~~~~~-------------------------~~~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~  166 (384)
T d2omza2         114 GLTLFNNQITD-------------------------IDP-LKNLTNLNRLELSSNTISDISAL-SGLTSLQQLSFGNQVT  166 (384)
T ss_dssp             EEECCSSCCCC-------------------------CGG-GTTCTTCSEEEEEEEEECCCGGG-TTCTTCSEEEEEESCC
T ss_pred             ccccccccccc-------------------------ccc-ccccccccccccccccccccccc-cccccccccccccccc
Confidence            76666554422                         211 11223344444444443311111 0000000000000000


Q ss_pred             cCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCch
Q 045580          229 SLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPR  308 (764)
Q Consensus       229 ~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~  308 (764)
                      ...                            .+ ...+.........|...  ....+..+++++.+++++|.+.+..| 
T Consensus       167 ~~~----------------------------~~-~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~-  214 (384)
T d2omza2         167 DLK----------------------------PL-ANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP-  214 (384)
T ss_dssp             CCG----------------------------GG-TTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             hhh----------------------------hh-ccccccccccccccccc--cccccccccccceeeccCCccCCCCc-
Confidence            000                            00 00122222222222221  22334444455555555554442222 


Q ss_pred             hhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCC
Q 045580          309 QFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQ  388 (764)
Q Consensus       309 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  388 (764)
                        ...+++|+.|++++|.+++...+..+++|+.|++++|.+++..+  +..+++|++|++++|++++..  .+..++.++
T Consensus       215 --~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~  288 (384)
T d2omza2         215 --LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALT  288 (384)
T ss_dssp             --GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCS
T ss_pred             --ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC--ccccccccc
Confidence              12344555555555555544444555566666666666654332  556667777777777666432  256667777


Q ss_pred             EEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcC
Q 045580          389 FLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQL  468 (764)
Q Consensus       389 ~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  468 (764)
                      .+.++.|.+++. +....+++++.|++++|++++..  .+..+++|++|++++|++++ ++ .+..+++|++|++++|++
T Consensus       289 ~l~~~~n~l~~~-~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         289 NLELNENQLEDI-SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQI  363 (384)
T ss_dssp             EEECCSSCCSCC-GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCC
T ss_pred             cccccccccccc-cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcC
Confidence            777777776642 22236677777777777777543  26677888888888888874 34 577888888888888888


Q ss_pred             CccCCccccCCCCCCEEeCCCC
Q 045580          469 KGNIPNQLCHLSLLNILDLSYN  490 (764)
Q Consensus       469 ~~~~~~~~~~l~~L~~L~Ls~n  490 (764)
                      ++..|  +.++++|+.|+|++|
T Consensus       364 ~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         364 SDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CBCGG--GTTCTTCSEEECCCE
T ss_pred             CCChh--hccCCCCCEeeCCCC
Confidence            86544  777888888888876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=9.6e-24  Score=217.25  Aligned_cols=252  Identities=22%  Similarity=0.238  Sum_probs=188.3

Q ss_pred             CCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEecc
Q 045580          337 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMH  416 (764)
Q Consensus       337 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~  416 (764)
                      +++++|++++|+++...+.+|.++++|++|++++|.+....|..|..+++|++|++++|+++.....  ....++.|++.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~~~  108 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVH  108 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc--hhhhhhhhhcc
Confidence            3456666666666655555677778888888888888766677788888888888888887743322  23567788888


Q ss_pred             CCccccccchhhcCCCCCCEEEccCCcCC--CcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC
Q 045580          417 MNAFNGSIPGALRRSSSLTVLDLRDNQFS--GSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG  494 (764)
Q Consensus       417 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  494 (764)
                      .|.+.+..+..+.....+..++...|...  +..+..+..+++|+.+++++|.+. .+|..+  +++|+.|++++|..++
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITK  185 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCE
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCC
Confidence            88887766667777788888888877543  233556778888999999998887 455443  5789999999988876


Q ss_pred             CcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccE
Q 045580          495 PIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTG  574 (764)
Q Consensus       495 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  574 (764)
                      ..+..+.+                                                                  ++.++.
T Consensus       186 ~~~~~~~~------------------------------------------------------------------~~~l~~  199 (305)
T d1xkua_         186 VDAASLKG------------------------------------------------------------------LNNLAK  199 (305)
T ss_dssp             ECTGGGTT------------------------------------------------------------------CTTCCE
T ss_pred             CChhHhhc------------------------------------------------------------------cccccc
Confidence            66655433                                                                  336788


Q ss_pred             EEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCccc------ccCCCCCCeEe
Q 045580          575 LDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQ------LTELNFLSNFN  648 (764)
Q Consensus       575 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~------l~~l~~L~~L~  648 (764)
                      |++++|++++..+..+.++++|++|+|++|+|+ .+|.++.++++|+.|+|++|+|+......      +..+.+|+.|+
T Consensus       200 L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~  278 (305)
T d1xkua_         200 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS  278 (305)
T ss_dssp             EECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             cccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEE
Confidence            999999999888888899999999999999998 67888999999999999999998543333      34567889999


Q ss_pred             ccCCccc-cCCCC
Q 045580          649 VSYNHLS-GPTPN  660 (764)
Q Consensus       649 ls~N~l~-g~~p~  660 (764)
                      +++|++. ..+|.
T Consensus       279 L~~N~~~~~~~~~  291 (305)
T d1xkua_         279 LFSNPVQYWEIQP  291 (305)
T ss_dssp             CCSSSSCGGGSCG
T ss_pred             CCCCcCccCcCCH
Confidence            9999885 44443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=3.7e-23  Score=212.82  Aligned_cols=243  Identities=20%  Similarity=0.244  Sum_probs=164.8

Q ss_pred             ccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEe
Q 045580          243 LLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL  322 (764)
Q Consensus       243 L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l  322 (764)
                      .+.++-++.+++ ++|..+   .+++++|+|++|+++...+.+|.++++|++|++++|.+. .++...+..++.|+.|++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecc
Confidence            445566666665 666654   356777777777776444456677777777777777776 444333466677777777


Q ss_pred             ecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccC--CCccccccCCCCCCEEECcCCCCCCC
Q 045580          323 SDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY--GQIPHWFGNLSGLQFLDISENQLSGS  400 (764)
Q Consensus       323 ~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~  400 (764)
                      ++|+++.... .....++.|++..|.+.+..+..+.....+..++...|...  ...+..+..+++|+.+++++|.++..
T Consensus        87 ~~n~l~~l~~-~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          87 SKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             CSSCCSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             cCCccCcCcc-chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            7776664331 22346677777777777666666666777777777776433  23345677777888888888877643


Q ss_pred             CCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCC
Q 045580          401 VPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLS  480 (764)
Q Consensus       401 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  480 (764)
                       +.. .+++|+.|++++|...+..+..+..++.++.|++++|++++..+.++..+++|++|+|++|+++ .+|..+..++
T Consensus       166 -~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~  242 (305)
T d1xkua_         166 -PQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK  242 (305)
T ss_dssp             -CSS-CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS
T ss_pred             -Ccc-cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccccc
Confidence             322 2467778888887777777777777788888888888887766777777788888888888777 5677777778


Q ss_pred             CCCEEeCCCCcCcC
Q 045580          481 LLNILDLSYNKFNG  494 (764)
Q Consensus       481 ~L~~L~Ls~n~l~~  494 (764)
                      +|++|++++|+++.
T Consensus       243 ~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         243 YIQVVYLHNNNISA  256 (305)
T ss_dssp             SCCEEECCSSCCCC
T ss_pred             CCCEEECCCCccCc
Confidence            88888888877763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.4e-24  Score=219.22  Aligned_cols=210  Identities=22%  Similarity=0.207  Sum_probs=155.4

Q ss_pred             CCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccchhhcCCCCCCEEEcc-CCcCCCcchhhhhcCCCccEEEc
Q 045580          386 GLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLR-DNQFSGSIPIWINEFSYLGILLL  463 (764)
Q Consensus       386 ~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~-~n~l~~~~p~~~~~l~~L~~L~L  463 (764)
                      ++++|+|++|++++..+..+ ++++|++|++++|.+.+..+..+..+..+..++.. .+.++...+..+.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            45555555555554444444 55556666666666655555556666666666554 44555455666777777777777


Q ss_pred             cCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhcccccc
Q 045580          464 RGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKH  543 (764)
Q Consensus       464 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  543 (764)
                      ++|.+....+..+...++|+.+++++|++++..+..+..                                         
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~-----------------------------------------  151 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-----------------------------------------  151 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------------
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhcc-----------------------------------------
Confidence            777776555666777777888888888877544444432                                         


Q ss_pred             ccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEE
Q 045580          544 FYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESL  623 (764)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  623 (764)
                                               ++.|+.|++++|++++..+..+.++++|+.+++++|++++..|..|.++++|++|
T Consensus       152 -------------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L  206 (284)
T d1ozna_         152 -------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (284)
T ss_dssp             -------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             -------------------------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccc
Confidence                                     2367888888888887778888999999999999999998889999999999999


Q ss_pred             ECcCCcCcccCcccccCCCCCCeEeccCCccccCCCCC
Q 045580          624 DLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPNA  661 (764)
Q Consensus       624 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~  661 (764)
                      |+++|++++..|..|..+++|++|++++|++.|.|+..
T Consensus       207 ~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             cccccccccccccccccccccCEEEecCCCCCCCccch
Confidence            99999999888889999999999999999999988754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.7e-23  Score=207.89  Aligned_cols=225  Identities=23%  Similarity=0.250  Sum_probs=171.5

Q ss_pred             EEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeec
Q 045580          245 RIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD  324 (764)
Q Consensus       245 ~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~  324 (764)
                      .++.++++++ ++|..+   .+.+++|+|++|+++...+.+|.++++|++|++++|.+. .++...+..+..++.+... 
T Consensus        15 ~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~-   88 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS-   88 (284)
T ss_dssp             EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC-
T ss_pred             EEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccc-
Confidence            4455666666 677654   346778888888887655567777888888888877776 4444444444444444332 


Q ss_pred             ccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCc
Q 045580          325 NHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSS  404 (764)
Q Consensus       325 n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  404 (764)
                                          ..+.++...+..|+++++|++|++++|.+....+..+...++|+.+++++|++++..+..
T Consensus        89 --------------------~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~  148 (284)
T d1ozna_          89 --------------------DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT  148 (284)
T ss_dssp             --------------------SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             --------------------cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhH
Confidence                                233444455667788888888888888887666677777888888888888888776676


Q ss_pred             c-cCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCC
Q 045580          405 F-NLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLN  483 (764)
Q Consensus       405 ~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  483 (764)
                      + .+++|+.|++++|++++..+..|.++++|+.+++++|++++..|..|..+++|++|++++|++.+..+..|..+++|+
T Consensus       149 f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             hccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence            7 678888888888888877788888899999999999999988888899999999999999999987788888999999


Q ss_pred             EEeCCCCcCcCC
Q 045580          484 ILDLSYNKFNGP  495 (764)
Q Consensus       484 ~L~Ls~n~l~~~  495 (764)
                      .|++++|++.+.
T Consensus       229 ~L~l~~N~l~C~  240 (284)
T d1ozna_         229 YLRLNDNPWVCD  240 (284)
T ss_dssp             EEECCSSCEECS
T ss_pred             EEEecCCCCCCC
Confidence            999999988754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.5e-22  Score=200.63  Aligned_cols=205  Identities=21%  Similarity=0.226  Sum_probs=159.7

Q ss_pred             CCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEc
Q 045580          384 LSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLL  463 (764)
Q Consensus       384 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  463 (764)
                      ...+.+++.+++.++. +|..+. +++++|+|++|++++..+..|.++++|++|+|++|+++ .+| .++.+++|++|++
T Consensus         9 ~~~~~~v~C~~~~L~~-iP~~lp-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTA-LPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             STTCCEEECTTSCCSS-CCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEEC
T ss_pred             cCCCeEEEccCCCCCe-eCcCcC-cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccc
Confidence            3444555666666653 343321 45677777777777666667888888888888888887 344 2467888888888


Q ss_pred             cCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhcccccc
Q 045580          464 RGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKH  543 (764)
Q Consensus       464 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  543 (764)
                      ++|+++ ..+..+..+++|+.|++++|.+.+..+..+..                                         
T Consensus        85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----------------------------------------  122 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-----------------------------------------  122 (266)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-----------------------------------------
T ss_pred             cccccc-ccccccccccccccccccccccceeecccccc-----------------------------------------
Confidence            888888 45667888889999999998876543333221                                         


Q ss_pred             ccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEE
Q 045580          544 FYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESL  623 (764)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  623 (764)
                                               +.+++.|++++|.+++..+..+..+++|+.|++++|++++..+..++.+++|++|
T Consensus       123 -------------------------l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L  177 (266)
T d1p9ag_         123 -------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL  177 (266)
T ss_dssp             -------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred             -------------------------ccccccccccccccceeccccccccccchhcccccccccccCcccccccccccee
Confidence                                     3478889999999997777888899999999999999998888889999999999


Q ss_pred             ECcCCcCcccCcccccCCCCCCeEeccCCccccCCCC
Q 045580          624 DLSHNDLSGQIPPQLTELNFLSNFNVSYNHLSGPTPN  660 (764)
Q Consensus       624 dLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~  660 (764)
                      ||++|+|+ .+|+.+..+++|+.|+|++|++.|.|.-
T Consensus       178 ~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             ECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             ecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence            99999999 7899999999999999999999987753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.5e-20  Score=186.95  Aligned_cols=197  Identities=27%  Similarity=0.312  Sum_probs=117.5

Q ss_pred             CcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccc
Q 045580          268 LLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNN  347 (764)
Q Consensus       268 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n  347 (764)
                      +.+.+.++++++ .+|..+.  +++++|+|++|.+. .+|...+.++++|++|++++|+++....+              
T Consensus        12 ~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~~~--------------   73 (266)
T d1p9ag_          12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD--------------   73 (266)
T ss_dssp             CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC--------------
T ss_pred             CeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccccccc--------------
Confidence            334444444444 2343332  24555555555554 34433334444444444444444322222              


Q ss_pred             cCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcc-cCCCccEEeccCCccccccch
Q 045580          348 HFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSF-NLSSLRRLYMHMNAFNGSIPG  426 (764)
Q Consensus       348 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~  426 (764)
                                +.+++|++|++++|+++ ..+..+..+++|+.|++++|.+.+..+..+ .+.+++.|++++|.+....+.
T Consensus        74 ----------~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~  142 (266)
T d1p9ag_          74 ----------GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG  142 (266)
T ss_dssp             ----------SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             ----------ccccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccc
Confidence                      33444455555555444 233445555555555555555554444444 556666666666666655566


Q ss_pred             hhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcC
Q 045580          427 ALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNG  494 (764)
Q Consensus       427 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  494 (764)
                      .+..+++++.+++++|++++..+..+..+++|++|+|++|+++ .+|+.+..+++|+.|+|++|++..
T Consensus       143 ~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            6677778888888888888776777788888888888888888 677777788888999999988763

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=8e-18  Score=176.18  Aligned_cols=68  Identities=21%  Similarity=0.349  Sum_probs=47.4

Q ss_pred             ccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEec
Q 045580          570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNV  649 (764)
Q Consensus       570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  649 (764)
                      ++|++|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|+.   +++|+.|++++|+|+ .+|+...   .|+.|.+
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~---~L~~L~~  351 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPE---SVEDLRM  351 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCT---TCCEEEC
T ss_pred             CCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcccc---ccCeeEC
Confidence            46778888888877 56653   467788888888887 56653   457888888888887 5665433   4555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=1.3e-17  Score=174.41  Aligned_cols=76  Identities=29%  Similarity=0.384  Sum_probs=59.1

Q ss_pred             ccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEeccC
Q 045580          572 MTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNVSY  651 (764)
Q Consensus       572 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  651 (764)
                      ....+++.+.+.+ ++   ..+++|++|+|++|+++ .+|..   +++|+.|+|++|+|+ .+|+.   +++|++|++++
T Consensus       266 ~~~~~~~~~~~~~-~~---~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~  333 (353)
T d1jl5a_         266 LYYLNASSNEIRS-LC---DLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEY  333 (353)
T ss_dssp             CCEEECCSSCCSE-EC---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCS
T ss_pred             hcccccccCcccc-cc---ccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcC
Confidence            4456677777663 22   34678999999999998 67854   578999999999998 67754   56799999999


Q ss_pred             CccccCCCC
Q 045580          652 NHLSGPTPN  660 (764)
Q Consensus       652 N~l~g~~p~  660 (764)
                      |+++ .+|.
T Consensus       334 N~L~-~lp~  341 (353)
T d1jl5a_         334 NPLR-EFPD  341 (353)
T ss_dssp             SCCS-SCCC
T ss_pred             CcCC-CCCc
Confidence            9987 4664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.3e-20  Score=203.34  Aligned_cols=209  Identities=22%  Similarity=0.173  Sum_probs=119.7

Q ss_pred             CCCEEECcCCCCCCCCCCc----c-cCCCccEEeccCCccccc-----cchhhcCCCCCCEEEccCCcCCCcc----hhh
Q 045580          386 GLQFLDISENQLSGSVPSS----F-NLSSLRRLYMHMNAFNGS-----IPGALRRSSSLTVLDLRDNQFSGSI----PIW  451 (764)
Q Consensus       386 ~L~~L~L~~n~l~~~~~~~----~-~~~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~L~L~~n~l~~~~----p~~  451 (764)
                      ....+++..+.+.......    . ....++.+++.+|.+...     .+........++.+++++|.+....    ...
T Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~  278 (460)
T d1z7xw1         199 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  278 (460)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             cccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccc
Confidence            4455666655543221110    1 345666777766654321     2223344556777777777665321    233


Q ss_pred             hhcCCCccEEEccCCcCCccCCccc-----cCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchh
Q 045580          452 INEFSYLGILLLRGNQLKGNIPNQL-----CHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRIST  526 (764)
Q Consensus       452 ~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  526 (764)
                      +...+.++.+++++|.+++.....+     .....|+.+++++|.++......+.++.                      
T Consensus       279 l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~----------------------  336 (460)
T d1z7xw1         279 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL----------------------  336 (460)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH----------------------
T ss_pred             ccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccccc----------------------
Confidence            4456667777777776653222211     1234667777777766532222221110                      


Q ss_pred             hHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCccccc----CCcccc-Cccccceecc
Q 045580          527 EFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGD----IPSEIG-SLSEIRALNL  601 (764)
Q Consensus       527 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----ip~~l~-~l~~L~~L~L  601 (764)
                                                              .....|++|||++|++++.    +++.+. ..+.|++|+|
T Consensus       337 ----------------------------------------~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~L  376 (460)
T d1z7xw1         337 ----------------------------------------AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL  376 (460)
T ss_dssp             ----------------------------------------HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             ----------------------------------------ccccchhhhheeeecccCcccchhhhhhhcccCCCCEEEC
Confidence                                                    1134688899998888653    333343 4567888999


Q ss_pred             cccccccc----cCccccCCCCCCEEECcCCcCcccCccc----cc-CCCCCCeEeccCCcccc
Q 045580          602 SHNFLSGS----IPQSLSNLKMIESLDLSHNDLSGQIPPQ----LT-ELNFLSNFNVSYNHLSG  656 (764)
Q Consensus       602 s~N~l~~~----~p~~l~~l~~L~~LdLs~N~l~~~ip~~----l~-~l~~L~~L~ls~N~l~g  656 (764)
                      ++|+|+..    +++.+...++|++|||++|+++......    +. .-..|+.|++++|++..
T Consensus       377 s~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         377 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            99988743    4556677788999999999887543332    22 23468888888888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.4e-20  Score=205.00  Aligned_cols=387  Identities=23%  Similarity=0.193  Sum_probs=211.1

Q ss_pred             CCcEEECcCCcccccC-chhhcCCCCCCEEECCCCCCCC----cchhhhhCCCCCCEEECcCCCCCCCCChhhhc-cCCC
Q 045580           73 KLVELDLSKNNLYGHL-SPCLSNLTHIKVLDLSSNQLTG----NLQSVIANIKSLEYLSLDDNNFEGSFSFNSLK-NHSK  146 (764)
Q Consensus        73 ~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~-~l~~  146 (764)
                      +|+.||+++|++++.. ...+..++++++|+|++|.++.    .+..++..+++|++|||++|+++. .....+. .+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~-~~~~~l~~~l~-   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD-VGVHCVLQGLQ-   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH-HHHHHHHHTTC-
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCCh-HHHHHHHHHHh-
Confidence            6889999999998642 4556778999999999999884    345667889999999999998751 1111111 110 


Q ss_pred             CcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCC-----ccHhhhCCCCccEEEccCCCCCCccchHHhh----cC
Q 045580          147 LQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHA-----LPSFLLHQLDLRFIDLSHNKLQGTFPSWLLQ----NN  217 (764)
Q Consensus       147 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-----lp~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~----~l  217 (764)
                                          ....+|++|++++|+++.     ++..+..+++|++|++++|.+.......+..    ..
T Consensus        81 --------------------~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~  140 (460)
T d1z7xw1          81 --------------------TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ  140 (460)
T ss_dssp             --------------------STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred             --------------------cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccc
Confidence                                011246667777776643     3455666777888888888776332222221    11


Q ss_pred             CCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccC----Cccc-cCCCCC
Q 045580          218 TKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRI----PSSM-SEMKRL  292 (764)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~----~~~l-~~l~~L  292 (764)
                      ............+......                   .+...+ ...+.++.++++.+......    ...+ ..-...
T Consensus       141 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~l-~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~  200 (460)
T d1z7xw1         141 CRLEKLQLEYCSLSAASCE-------------------PLASVL-RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL  200 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHH-------------------HHHHHH-HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCC
T ss_pred             cccccccccccccchhhhc-------------------cccccc-ccccccccccccccccccccccccccccccccccc
Confidence            1222233222222110000                   000000 11234444444443322100    0000 111233


Q ss_pred             CEEECCCCcccccCc---hhhhhCCCCCCEEEeeccccccee-------ecCCCCCCceEEcccccCCCcc----ccccc
Q 045580          293 ESLDLSSNNFSGELP---RQFLSGCFSLSFLSLSDNHLQGEV-------VFPNSTNLCWLYLNNNHFSGKI----QDGLS  358 (764)
Q Consensus       293 ~~L~Ls~n~l~~~~p---~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~~L~~L~L~~n~l~~~~----~~~l~  358 (764)
                      ..+++..+.+...-.   .......+.++.+++.+|.+....       .......++.+++++|.+....    ...+.
T Consensus       201 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~  280 (460)
T d1z7xw1         201 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR  280 (460)
T ss_dssp             CEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             cccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccc
Confidence            444444443321100   011233455555555555443211       2334456666666666654321    22344


Q ss_pred             CCCCCCEEeCcCCccCCCccccc-----cCCCCCCEEECcCCCCCCCCCCcc-----cCCCccEEeccCCccccc----c
Q 045580          359 KATSLLELDLSNNMLYGQIPHWF-----GNLSGLQFLDISENQLSGSVPSSF-----NLSSLRRLYMHMNAFNGS----I  424 (764)
Q Consensus       359 ~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~-----~~~~L~~L~l~~n~l~~~----~  424 (764)
                      ..+.++.+++++|.+.+.....+     .....|+.+++++|.++......+     ...+|++|++++|.+.+.    +
T Consensus       281 ~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l  360 (460)
T d1z7xw1         281 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL  360 (460)
T ss_dssp             HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchh
Confidence            56677777777776653222111     234567788888777764432222     456788888888877643    2


Q ss_pred             chhhc-CCCCCCEEEccCCcCCCc----chhhhhcCCCccEEEccCCcCCccCCcc----cc-CCCCCCEEeCCCCcCcC
Q 045580          425 PGALR-RSSSLTVLDLRDNQFSGS----IPIWINEFSYLGILLLRGNQLKGNIPNQ----LC-HLSLLNILDLSYNKFNG  494 (764)
Q Consensus       425 ~~~~~-~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~~~----~~-~l~~L~~L~Ls~n~l~~  494 (764)
                      +..+. ..+.|++|+|++|++++.    ++..+..+++|++|++++|++++.....    +. +...|+.|++.+|.+..
T Consensus       361 ~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             hhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            33332 456788999999988753    3455667788999999999887543322    32 33478999999998876


Q ss_pred             CcChhhh
Q 045580          495 PIPVCFA  501 (764)
Q Consensus       495 ~~p~~~~  501 (764)
                      ..+..+.
T Consensus       441 ~~~~~l~  447 (460)
T d1z7xw1         441 EMEDRLQ  447 (460)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=9.2e-17  Score=156.47  Aligned_cols=54  Identities=24%  Similarity=0.356  Sum_probs=34.6

Q ss_pred             ccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcC
Q 045580          570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSH  627 (764)
Q Consensus       570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~  627 (764)
                      ++|+.|||++|++++ +| .++++++|+.|+|++|++++..|  ++++++|+.|++++
T Consensus       173 ~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         173 SKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             ccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            356666666666653 33 26667777777777777774332  67777777777763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.7e-16  Score=154.49  Aligned_cols=187  Identities=23%  Similarity=0.252  Sum_probs=110.2

Q ss_pred             CCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeC
Q 045580          289 MKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL  368 (764)
Q Consensus       289 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  368 (764)
                      +.+|+.|++++|.+. .++.  +..+++|++|++++|.+.+...+..+++++++++++|.++..  ..+.++++|+.+++
T Consensus        40 l~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          40 LDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (227)
T ss_dssp             HHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             cCCcCEEECCCCCCC-cchh--HhcCCCCcEeecCCceeecccccccccccccccccccccccc--cccccccccccccc
Confidence            334444444444443 2321  233444444444444444333344445555555555554422  23556666666666


Q ss_pred             cCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcc
Q 045580          369 SNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSI  448 (764)
Q Consensus       369 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  448 (764)
                      +++...+.  ..+...+.++.+.++.+.+.... ....+++|+.|++++|.+.+..  .+.++++|++|++++|++++ +
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l  188 (227)
T d1h6ua2         115 TSTQITDV--TPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-I  188 (227)
T ss_dssp             TTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-C
T ss_pred             cccccccc--chhccccchhhhhchhhhhchhh-hhccccccccccccccccccch--hhcccccceecccCCCccCC-C
Confidence            66655432  23455666777777666665332 2225667777777777765433  36778888888888888875 3


Q ss_pred             hhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCC
Q 045580          449 PIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSY  489 (764)
Q Consensus       449 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  489 (764)
                      + .++.+++|++|++++|++++ ++ .+.++++|++|++++
T Consensus       189 ~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 S-PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             G-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             h-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            3 37788888888888888884 33 277888888888863

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=3.1e-17  Score=155.07  Aligned_cols=61  Identities=25%  Similarity=0.355  Sum_probs=30.3

Q ss_pred             cccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCc
Q 045580          571 YMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLS  631 (764)
Q Consensus       571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~  631 (764)
                      .|+.|+|++|++++..|..|.++++|+.|+|++|+|++..|..|..+++|++|+|++|.+.
T Consensus        79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            3444444444444444444555555555555555555444444555555555555555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-16  Score=157.21  Aligned_cols=103  Identities=18%  Similarity=0.256  Sum_probs=57.2

Q ss_pred             cEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEee
Q 045580          244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS  323 (764)
Q Consensus       244 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~  323 (764)
                      +.++.++..++ .+|..+   .+++++|++++|.++...+.+|.++++|++|++++|.+...++...+.+++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45556665665 666544   24677777777777654445567777777777777766655555445556666666554


Q ss_pred             c-cccccee--ecCCCCCCceEEcccccCC
Q 045580          324 D-NHLQGEV--VFPNSTNLCWLYLNNNHFS  350 (764)
Q Consensus       324 ~-n~l~~~~--~~~~~~~L~~L~L~~n~l~  350 (764)
                      . |.+....  .+..+++|+.+++++|.+.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccccccccccccchhhhc
Confidence            3 2332221  2334444444444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2e-16  Score=155.84  Aligned_cols=80  Identities=14%  Similarity=-0.046  Sum_probs=51.2

Q ss_pred             cccEEEcccCcccccCCccccCccccc-eecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEec
Q 045580          571 YMTGLDFSCNELTGDIPSEIGSLSEIR-ALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNV  649 (764)
Q Consensus       571 ~L~~LdLs~N~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  649 (764)
                      .++.|++++|++++ ++.......+++ .+++++|+++...+..|.++++|+.|||++|+++...+..|.+++.|+++++
T Consensus       154 ~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cceeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            45667777777774 333333444444 3456777777444455778888888888888887555556677776666665


Q ss_pred             cC
Q 045580          650 SY  651 (764)
Q Consensus       650 s~  651 (764)
                      .+
T Consensus       233 ~~  234 (242)
T d1xwdc1         233 YN  234 (242)
T ss_dssp             ES
T ss_pred             CC
Confidence            43

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=5e-17  Score=153.64  Aligned_cols=177  Identities=19%  Similarity=0.199  Sum_probs=116.4

Q ss_pred             cEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcc-hhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCC
Q 045580          411 RRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSI-PIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSY  489 (764)
Q Consensus       411 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  489 (764)
                      +.++.++++++ .+|..+  .+++++|+|++|+|++.+ +..|..+++|+.|++++|++.+..+..+..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            35556666655 344333  246777777777776533 45567777777777777777766677777777777777777


Q ss_pred             CcCcCCcChhhhcchhhcccccCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeecccccccccccc
Q 045580          490 NKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDIL  569 (764)
Q Consensus       490 n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  569 (764)
                      |++++..|..|.+                                                                  +
T Consensus        88 N~l~~l~~~~F~~------------------------------------------------------------------l  101 (192)
T d1w8aa_          88 NKIKEISNKMFLG------------------------------------------------------------------L  101 (192)
T ss_dssp             CCCCEECSSSSTT------------------------------------------------------------------C
T ss_pred             ccccccCHHHHhC------------------------------------------------------------------C
Confidence            7777555544443                                                                  3


Q ss_pred             ccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEec
Q 045580          570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFNV  649 (764)
Q Consensus       570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  649 (764)
                      ++|++|+|++|+|++..|..|..+++|++|+|++|.+....+.. .-...++.+.+..|.++...|..+   ..++.+|+
T Consensus       102 ~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L  177 (192)
T d1w8aa_         102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDL  177 (192)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGS
T ss_pred             CcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCChhh---cCCEeeec
Confidence            36777888888887767777888888888888888877443221 112335566777777777667544   44566788


Q ss_pred             cCCccccCCCC
Q 045580          650 SYNHLSGPTPN  660 (764)
Q Consensus       650 s~N~l~g~~p~  660 (764)
                      +.|.+.|..+.
T Consensus       178 ~~n~l~C~~~~  188 (192)
T d1w8aa_         178 PHSEFKCSSEN  188 (192)
T ss_dssp             CTTTCCCCCC-
T ss_pred             CHhhCcCCCCC
Confidence            88888775553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=5.6e-16  Score=148.54  Aligned_cols=179  Identities=22%  Similarity=0.288  Sum_probs=96.7

Q ss_pred             EcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCCC
Q 045580          272 NLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSG  351 (764)
Q Consensus       272 ~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~  351 (764)
                      .+..+.+++.++.  ..+.+|++|++++|.+. .++.  +..+++|++|++++|++++...+                  
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~L~~n~i~~l~~~------------------   86 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKPL------------------   86 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGG------------------
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCC-Cchh--HhhCCCCCEEeCCCccccCcccc------------------
Confidence            3444444433321  23455666666666665 3332  23455555555555544443333                  


Q ss_pred             cccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCC
Q 045580          352 KIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRS  431 (764)
Q Consensus       352 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  431 (764)
                            +.+++|++|++++|++++ ++ .+..+++|+.|++++|.+.. ++....++.++.++++.|.+++.  ..+..+
T Consensus        87 ------~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~-~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l  155 (210)
T d1h6ta2          87 ------ANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRL  155 (210)
T ss_dssp             ------TTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred             ------ccCccccccccccccccc-cc-cccccccccccccccccccc-ccccccccccccccccccccccc--cccccc
Confidence                  445555555555555542 22 34555555555555555542 22222455566666666655432  234556


Q ss_pred             CCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCC
Q 045580          432 SSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLS  488 (764)
Q Consensus       432 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  488 (764)
                      ++|+.+++++|++++. + .+.++++|++|++++|++++ ++ .+..+++|++|+|+
T Consensus       156 ~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         156 TKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             cccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            6777777777777643 2 26667777777777777763 33 46677777777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.2e-15  Score=144.38  Aligned_cols=181  Identities=20%  Similarity=0.274  Sum_probs=115.7

Q ss_pred             EEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeec
Q 045580          245 RIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD  324 (764)
Q Consensus       245 ~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~  324 (764)
                      ...+..+.+.+.++..   .+.+|++|++++|.++.. + .+..+++|++|++++|+++ .++.  +..+++|+.|++++
T Consensus        28 ~~~l~~~~~~~~~~~~---~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~-~l~~--~~~l~~L~~L~l~~   99 (210)
T d1h6ta2          28 KDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDE   99 (210)
T ss_dssp             HHHTTCSCTTSEECHH---HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCS
T ss_pred             HHHhCcCccCCccCHH---HhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCcccc-Cccc--cccCcccccccccc
Confidence            3456667776555543   267899999999999853 3 5889999999999999998 4554  36789999999998


Q ss_pred             ccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCc
Q 045580          325 NHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSS  404 (764)
Q Consensus       325 n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  404 (764)
                      |++++...+..+++|+.|++++|.+...  ..+..++.++.+++++|.+++.  ..+..+++|+++++++|+++      
T Consensus       100 n~i~~l~~l~~l~~L~~L~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~------  169 (210)
T d1h6ta2         100 NKVKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS------  169 (210)
T ss_dssp             SCCCCGGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC------
T ss_pred             cccccccccccccccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccc------
Confidence            8887655566666666666666665422  2355555666666666655421  23444555555555555544      


Q ss_pred             ccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEcc
Q 045580          405 FNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLR  464 (764)
Q Consensus       405 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  464 (764)
                                       +..  .+.++++|++|++++|++++ +| .+..+++|++|+|+
T Consensus       170 -----------------~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         170 -----------------DIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             -----------------CCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             -----------------ccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence                             321  24555566666666666552 33 35556666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=3.3e-15  Score=141.78  Aligned_cols=177  Identities=23%  Similarity=0.299  Sum_probs=83.3

Q ss_pred             EEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccCC
Q 045580          271 LNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFS  350 (764)
Q Consensus       271 L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~  350 (764)
                      ..++.+.+++..+  ...++++++|++++|.+. .++.  +..+++|++|++++|++++...                  
T Consensus        23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~-~l~~--l~~l~nL~~L~Ls~N~l~~~~~------------------   79 (199)
T d2omxa2          23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP------------------   79 (199)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG------------------
T ss_pred             HHhCCCCCCCccC--HHHhcCCCEEECCCCCCC-Cccc--cccCCCcCcCccccccccCccc------------------
Confidence            3445555543322  234556666666666655 3332  2344455555555444443333                  


Q ss_pred             CcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcC
Q 045580          351 GKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRR  430 (764)
Q Consensus       351 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  430 (764)
                            ++++++|++|++++|.+.. ++ .+.++++|+.|++++|..... +....+++|+.|++++|++.. ++ .+..
T Consensus        80 ------l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~-~~-~l~~  148 (199)
T d2omxa2          80 ------LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISD-IS-ALSG  148 (199)
T ss_dssp             ------GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCC-CG-GGTT
T ss_pred             ------ccCCccccccccccccccc-cc-ccccccccccccccccccccc-cccchhhhhHHhhhhhhhhcc-cc-cccc
Confidence                  4444444444444444432 11 244444555555544444322 111134445555555554432 22 3445


Q ss_pred             CCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEE
Q 045580          431 SSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNIL  485 (764)
Q Consensus       431 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  485 (764)
                      +++|+.|++.+|++++. + .++++++|++|++++|++++ ++ .++.+++|++|
T Consensus       149 ~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         149 LTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            55556666666555532 2 25555666666666665553 22 34555555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=4.7e-15  Score=140.69  Aligned_cols=179  Identities=24%  Similarity=0.348  Sum_probs=115.5

Q ss_pred             cEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEee
Q 045580          244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS  323 (764)
Q Consensus       244 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~  323 (764)
                      ....++.+.+++.++..   .++++++|++++|.++. + +.+..+++|++|++++|+++ .++.  +.++++|++|+++
T Consensus        21 i~~~l~~~~~~~~~~~~---~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~-~~~~--l~~l~~L~~L~l~   92 (199)
T d2omxa2          21 MKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMN   92 (199)
T ss_dssp             HHHHTTCSSTTSEECHH---HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECC
T ss_pred             HHHHhCCCCCCCccCHH---HhcCCCEEECCCCCCCC-c-cccccCCCcCcCcccccccc-Cccc--ccCCccccccccc
Confidence            34566777777544432   27899999999999984 3 45889999999999999998 4544  5788999999998


Q ss_pred             cccccceeecCCCCCCceEEcccccCCCcccccccCCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCC
Q 045580          324 DNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPS  403 (764)
Q Consensus       324 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  403 (764)
                      +|.+.....+..+++|+.|++++|.+...  ..+..+++|+.|++++|++.. + +.+..+++|+.|++.+|+++     
T Consensus        93 ~n~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~-----  163 (199)
T d2omxa2          93 NNQIADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVT-----  163 (199)
T ss_dssp             SSCCCCCGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-----
T ss_pred             ccccccccccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-cccccccccccccccccccc-----
Confidence            88877655566666666666666655432  234555556666665555542 2 23445555555555555444     


Q ss_pred             cccCCCccEEeccCCccccccchhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEE
Q 045580          404 SFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGIL  461 (764)
Q Consensus       404 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  461 (764)
                                        +..  .++++++|++|++++|++++ ++ .++.+++|++|
T Consensus       164 ------------------~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         164 ------------------DLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             ------------------CCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ------------------CCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence                              321  25556666666666666663 22 35566666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.6e-16  Score=154.30  Aligned_cols=255  Identities=17%  Similarity=0.166  Sum_probs=143.0

Q ss_pred             cEEEccCCCCCCccchHHhhcCCCCCEEEccCCcCccCCCCCCCCCCccEEEccCCCCCCCCChhHhhcCCCCcEEEccc
Q 045580          196 RFIDLSHNKLQGTFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRIDISHNKFSGQLPGNMGKILPELLSLNLSE  275 (764)
Q Consensus       196 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~  275 (764)
                      +.+|++++.+.......+..  .....+.++...............+|++||+++|.+.+.....+...+++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            36777777665333333332  2355666666554433222335567888888888776554455556688899999999


Q ss_pred             CCCCccCCccccCCCCCCEEECCCCc-ccccCchhhhhCCCCCCEEEeeccc-cccee---ec-CCCCCCceEEccccc-
Q 045580          276 NGFEVRIPSSMSEMKRLESLDLSSNN-FSGELPRQFLSGCFSLSFLSLSDNH-LQGEV---VF-PNSTNLCWLYLNNNH-  348 (764)
Q Consensus       276 n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~l~~n~-l~~~~---~~-~~~~~L~~L~L~~n~-  348 (764)
                      |.++...+..++.+++|++|++++|. +++..-..+...+++|++|+++++. +++..   .+ ..+++|+.|+++++. 
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            88887777788888889999998864 4322112234567788888887753 33211   11 123455555555432 


Q ss_pred             -CCCc-ccccccCCCCCCEEeCcCC-ccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCC-cccccc
Q 045580          349 -FSGK-IQDGLSKATSLLELDLSNN-MLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMN-AFNGSI  424 (764)
Q Consensus       349 -l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n-~l~~~~  424 (764)
                       ++.. +.....++++|++|++++| .+++.....+..                       +++|++|++++| .+++..
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~-----------------------~~~L~~L~L~~C~~i~~~~  217 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-----------------------LNYLQHLSLSRCYDIIPET  217 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-----------------------CTTCCEEECTTCTTCCGGG
T ss_pred             ccccccccccccccccccccccccccCCCchhhhhhcc-----------------------cCcCCEEECCCCCCCChHH
Confidence             2211 1111233444555555443 233333333444                       445555555553 344444


Q ss_pred             chhhcCCCCCCEEEccCCcCCCcchhhhhcCCCccEEEccCCcCCccCCccccC
Q 045580          425 PGALRRSSSLTVLDLRDNQFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCH  478 (764)
Q Consensus       425 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  478 (764)
                      ...++.+++|+.|+++++--.+.++.....+++|+   +..+++++..++.++.
T Consensus       218 l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         218 LLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             GGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred             HHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence            44566778888888887722223333335566655   4566677655555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.1e-15  Score=150.52  Aligned_cols=252  Identities=18%  Similarity=0.181  Sum_probs=154.3

Q ss_pred             cEEEccCCCCCCCCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEee
Q 045580          244 LRIDISHNKFSGQLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS  323 (764)
Q Consensus       244 ~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~  323 (764)
                      +++|++++.+.......+..  ..+..+.++...+..... ......+|++|+++++.+.+.....++..+++|++|+++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            36777777664333333332  245566666655443222 333556899999999888755555567788899999998


Q ss_pred             ccccccee--ecCCCCCCceEEcccc-cCCCcc-cccccCCCCCCEEeCcCCc-cCCC-ccccc-cCCCCCCEEECcCCC
Q 045580          324 DNHLQGEV--VFPNSTNLCWLYLNNN-HFSGKI-QDGLSKATSLLELDLSNNM-LYGQ-IPHWF-GNLSGLQFLDISENQ  396 (764)
Q Consensus       324 ~n~l~~~~--~~~~~~~L~~L~L~~n-~l~~~~-~~~l~~l~~L~~L~L~~n~-l~~~-~~~~~-~~l~~L~~L~L~~n~  396 (764)
                      ++.+++..  .+..+++|++|++++| .++... ......+++|++|++++|. +++. +...+ ...++|+.|+++++.
T Consensus        80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~  159 (284)
T d2astb2          80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  159 (284)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence            88876543  6677788888888885 454322 1223467888888888863 3321 11222 234678888887653


Q ss_pred             --CCCCCCCcc--cCCCccEEeccCC-ccccccchhhcCCCCCCEEEccCC-cCCCcchhhhhcCCCccEEEccCCcCCc
Q 045580          397 --LSGSVPSSF--NLSSLRRLYMHMN-AFNGSIPGALRRSSSLTVLDLRDN-QFSGSIPIWINEFSYLGILLLRGNQLKG  470 (764)
Q Consensus       397 --l~~~~~~~~--~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~  470 (764)
                        ++......+  .+++|++|++++| .+++.....+..+++|++|++++| .+++.....++++++|+.|+++++ ++.
T Consensus       160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d  238 (284)
T d2astb2         160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD  238 (284)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCH
Confidence              332111111  5677888888776 456556666777788888888874 566655566777788888888777 332


Q ss_pred             c-CCccccCCCCCCEEeCCCCcCcCCcChhhhc
Q 045580          471 N-IPNQLCHLSLLNILDLSYNKFNGPIPVCFAN  502 (764)
Q Consensus       471 ~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  502 (764)
                      . +......+++|+   +..+++++..+..+++
T Consensus       239 ~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         239 GTLQLLKEALPHLQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             TCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred             HHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence            2 222223345543   4666676655554443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=2.3e-14  Score=148.84  Aligned_cols=67  Identities=19%  Similarity=0.249  Sum_probs=32.2

Q ss_pred             ccCccccceecccccccccccCcc----cc--CCCCCCEEECcCCcCccc----Cccccc-CCCCCCeEeccCCcccc
Q 045580          590 IGSLSEIRALNLSHNFLSGSIPQS----LS--NLKMIESLDLSHNDLSGQ----IPPQLT-ELNFLSNFNVSYNHLSG  656 (764)
Q Consensus       590 l~~l~~L~~L~Ls~N~l~~~~p~~----l~--~l~~L~~LdLs~N~l~~~----ip~~l~-~l~~L~~L~ls~N~l~g  656 (764)
                      +...++|++|+|++|.|++.-...    +.  ..+.|++||+++|+++..    +...+. +++.|++|++++|.+..
T Consensus       239 l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            344445555555555554332211    21  124566666666666532    222232 34566666666666643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=1.7e-14  Score=149.82  Aligned_cols=239  Identities=14%  Similarity=0.171  Sum_probs=164.7

Q ss_pred             ecCCCCCCceEEcccccCCCc----ccccccCCCCCCEEeCcCCccCCC----------ccccccCCCCCCEEECcCCCC
Q 045580          332 VFPNSTNLCWLYLNNNHFSGK----IQDGLSKATSLLELDLSNNMLYGQ----------IPHWFGNLSGLQFLDISENQL  397 (764)
Q Consensus       332 ~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~L~~n~l  397 (764)
                      .+.....++.|+|++|.+...    +...+...++|+.++++++.....          +...+..+++|+.|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            455578899999999988643    334566778999999988755321          123355678999999999988


Q ss_pred             CCCCCCcc-----cCCCccEEeccCCccccccch-------------hhcCCCCCCEEEccCCcCCCc----chhhhhcC
Q 045580          398 SGSVPSSF-----NLSSLRRLYMHMNAFNGSIPG-------------ALRRSSSLTVLDLRDNQFSGS----IPIWINEF  455 (764)
Q Consensus       398 ~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~-------------~~~~~~~L~~L~L~~n~l~~~----~p~~~~~l  455 (764)
                      .......+     ..++|++|++++|.+......             .....+.|+.+++++|+++..    +...+...
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  185 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence            76533222     568899999999977532111             124567899999999988743    33445678


Q ss_pred             CCccEEEccCCcCCcc-----CCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccccCCccccccccccchhhHHH
Q 045580          456 SYLGILLLRGNQLKGN-----IPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQAAGSFVLWETTQRISTEFEA  530 (764)
Q Consensus       456 ~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  530 (764)
                      +.|+.|++++|+++..     +...+..+++|+.|++++|.++......+...-                          
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l--------------------------  239 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL--------------------------  239 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG--------------------------
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccc--------------------------
Confidence            8999999999998742     234566788999999999987532111111000                          


Q ss_pred             hhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCcc----cc--Cccccceeccccc
Q 045580          531 YYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSE----IG--SLSEIRALNLSHN  604 (764)
Q Consensus       531 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~----l~--~l~~L~~L~Ls~N  604 (764)
                                                          ...+.|++|+|++|.+++.-...    +.  ..+.|+.|++++|
T Consensus       240 ------------------------------------~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N  283 (344)
T d2ca6a1         240 ------------------------------------KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN  283 (344)
T ss_dssp             ------------------------------------GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred             ------------------------------------cccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCC
Confidence                                                11457899999999987643322    32  2367999999999


Q ss_pred             ccccc----cCcccc-CCCCCCEEECcCCcCcc
Q 045580          605 FLSGS----IPQSLS-NLKMIESLDLSHNDLSG  632 (764)
Q Consensus       605 ~l~~~----~p~~l~-~l~~L~~LdLs~N~l~~  632 (764)
                      +|+..    +...+. +.++|+.|+|++|++..
T Consensus       284 ~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         284 EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            98754    334443 57889999999999974

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.2e-13  Score=125.48  Aligned_cols=129  Identities=16%  Similarity=0.158  Sum_probs=89.5

Q ss_pred             cccCCCCCcEEECcCCcccccCchhhcCCCCCCEEECCCCCCCCcchhhhhCCCCCCEEECcCCCCCCCCChhhhccCCC
Q 045580           67 GICELKKLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGSFSFNSLKNHSK  146 (764)
Q Consensus        67 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~  146 (764)
                      .+.+..++++|||++|+|+.+ +..+..+++|++|+|++|+++..  +.|..+++|++|++++|+++ .++...+..+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCccccccccc
Confidence            355677889999999998854 56667888999999999988853  34788889999999999887 444344555666


Q ss_pred             CcEEEccCCCCCCccccCCCCCCCCccEEEcCCCCCCCcc--HhhhCCCCccEEEccCCCCCCccch---HHhhcCCCCC
Q 045580          147 LQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLHALP--SFLLHQLDLRFIDLSHNKLQGTFPS---WLLQNNTKLD  221 (764)
Q Consensus       147 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~lp--~~l~~~~~L~~L~Ls~n~l~~~~~~---~~~~~l~~L~  221 (764)
                      |++|+++                         +|++..++  ..+..+++|++|++++|.++ ..|.   ..+..+++|+
T Consensus        89 L~~L~L~-------------------------~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~  142 (162)
T d1a9na_          89 LTELILT-------------------------NNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVR  142 (162)
T ss_dssp             CCEEECC-------------------------SCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCS
T ss_pred             cccceec-------------------------cccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcC
Confidence            5555555                         44454444  24566777777777777765 3332   3445677777


Q ss_pred             EEEc
Q 045580          222 TLYL  225 (764)
Q Consensus       222 ~L~L  225 (764)
                      .||-
T Consensus       143 ~LD~  146 (162)
T d1a9na_         143 VLDF  146 (162)
T ss_dssp             EETT
T ss_pred             eeCC
Confidence            7763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=6.1e-13  Score=114.58  Aligned_cols=86  Identities=28%  Similarity=0.340  Sum_probs=75.0

Q ss_pred             cccccEEEcccCcccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccC-cccccCCCCCCeE
Q 045580          569 LNYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQI-PPQLTELNFLSNF  647 (764)
Q Consensus       569 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L  647 (764)
                      ++.|++||+++|+++ .+|+.++.+++|+.|++++|+|++ +| .++.+++|+.|++++|+++... +..+..+++|+++
T Consensus        19 l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L   95 (124)
T d1dcea3          19 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL   95 (124)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEE
Confidence            457999999999998 678889999999999999999984 45 5899999999999999998543 3578899999999


Q ss_pred             eccCCccccC
Q 045580          648 NVSYNHLSGP  657 (764)
Q Consensus       648 ~ls~N~l~g~  657 (764)
                      ++++|++++.
T Consensus        96 ~l~~N~i~~~  105 (124)
T d1dcea3          96 NLQGNSLCQE  105 (124)
T ss_dssp             ECTTSGGGGS
T ss_pred             ECCCCcCCcC
Confidence            9999999863

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3e-13  Score=122.74  Aligned_cols=125  Identities=20%  Similarity=0.149  Sum_probs=63.5

Q ss_pred             CCCCCCEEeCcCCccCCCccccccCCCCCCEEECcCCCCCCCCCCcccCCCccEEeccCCccccccchhhcCCCCCCEEE
Q 045580          359 KATSLLELDLSNNMLYGQIPHWFGNLSGLQFLDISENQLSGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSSSLTVLD  438 (764)
Q Consensus       359 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  438 (764)
                      +..++++|+|++|+++ .++..+..+++|+.|++++|+++.. +....+++|++|++++|+++...+..+..+++|+.|+
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            3344444444444444 2233334444455555555544422 2211445555555555555543344445566666666


Q ss_pred             ccCCcCCCcch-hhhhcCCCccEEEccCCcCCccCC----ccccCCCCCCEEe
Q 045580          439 LRDNQFSGSIP-IWINEFSYLGILLLRGNQLKGNIP----NQLCHLSLLNILD  486 (764)
Q Consensus       439 L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~  486 (764)
                      +++|+++.... ..+..+++|++|++++|.++. .|    ..+..+++|++||
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            66666653211 345666666777777666652 22    2356677777776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=2.2e-12  Score=111.05  Aligned_cols=101  Identities=27%  Similarity=0.316  Sum_probs=55.0

Q ss_pred             EEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCCCCCCceEEcccccC
Q 045580          270 SLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHF  349 (764)
Q Consensus       270 ~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l  349 (764)
                      .|++++|+++ .++ .+..+++|++|++++|++. .+|..+ ..+++|+.|++++|.+++...+..+++|++|++++|++
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~-~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhh-hhhhcccccccccccccccCccccccccCeEECCCCcc
Confidence            4555666555 222 3555666666666666665 455443 44555555555555555444444555555555555555


Q ss_pred             CCcc-cccccCCCCCCEEeCcCCccC
Q 045580          350 SGKI-QDGLSKATSLLELDLSNNMLY  374 (764)
Q Consensus       350 ~~~~-~~~l~~l~~L~~L~L~~n~l~  374 (764)
                      +... ...+..+++|+.|++++|+++
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCC
Confidence            5332 234555666666666666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=3e-13  Score=127.37  Aligned_cols=144  Identities=22%  Similarity=0.251  Sum_probs=96.8

Q ss_pred             CCCEEEccCC--cCCCcchhhhhcCCCccEEEccCCcCCccCCccccCCCCCCEEeCCCCcCcCCcChhhhcchhhcccc
Q 045580          433 SLTVLDLRDN--QFSGSIPIWINEFSYLGILLLRGNQLKGNIPNQLCHLSLLNILDLSYNKFNGPIPVCFANVTLWTLGQ  510 (764)
Q Consensus       433 ~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~  510 (764)
                      ..+.+++.+.  .+. .++..+..+++|++|+|++|+++. ++ .+..+++|+.|++++|.++. +|.....        
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~--------   91 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAV--------   91 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHH--------
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-ccccccc--------
Confidence            3445555543  232 456677788888888888888873 43 47777888888888887752 3321111        


Q ss_pred             cCCccccccccccchhhHHHhhhhhhhccccccccccCCccceEEeeccccccccccccccccEEEcccCcccccCCccc
Q 045580          511 AAGSFVLWETTQRISTEFEAYYNSTLELSEVKHFYKASGQRGIEFMTKKRYESYKGDILNYMTGLDFSCNELTGDIPSEI  590 (764)
Q Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~ip~~l  590 (764)
                                                                                ++.|+.|++++|+++. + +.+
T Consensus        92 ----------------------------------------------------------~~~L~~L~l~~N~i~~-l-~~~  111 (198)
T d1m9la_          92 ----------------------------------------------------------ADTLEELWISYNQIAS-L-SGI  111 (198)
T ss_dssp             ----------------------------------------------------------HHHCCEEECSEEECCC-H-HHH
T ss_pred             ----------------------------------------------------------cccccccccccccccc-c-ccc
Confidence                                                                      2357788888888874 3 347


Q ss_pred             cCccccceecccccccccccC-ccccCCCCCCEEECcCCcCcccCccc----------ccCCCCCCeEe
Q 045580          591 GSLSEIRALNLSHNFLSGSIP-QSLSNLKMIESLDLSHNDLSGQIPPQ----------LTELNFLSNFN  648 (764)
Q Consensus       591 ~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~LdLs~N~l~~~ip~~----------l~~l~~L~~L~  648 (764)
                      ..+++|+.|++++|+++.... ..++.+++|+.|+|++|++....+..          +..+++|+.||
T Consensus       112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            778888888888888874322 46788888888888888877544332          45677777776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.1e-11  Score=107.55  Aligned_cols=89  Identities=20%  Similarity=0.160  Sum_probs=71.7

Q ss_pred             ccccEEEcccC-cccccCCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEe
Q 045580          570 NYMTGLDFSCN-ELTGDIPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFN  648 (764)
Q Consensus       570 ~~L~~LdLs~N-~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  648 (764)
                      +++++|++++| .++...+..|.++++|+.|+|++|+|+...|..|..+++|++|||++|+|+...+..+.. ..|+.|+
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~  109 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELV  109 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEE
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-ccccccc
Confidence            46777888665 477656677899999999999999999777888999999999999999999554445544 4699999


Q ss_pred             ccCCccccCCC
Q 045580          649 VSYNHLSGPTP  659 (764)
Q Consensus       649 ls~N~l~g~~p  659 (764)
                      |++|++.|.+-
T Consensus       110 L~~Np~~C~C~  120 (156)
T d2ifga3         110 LSGNPLHCSCA  120 (156)
T ss_dssp             CCSSCCCCCGG
T ss_pred             cCCCcccCCch
Confidence            99999987664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.2e-11  Score=107.51  Aligned_cols=110  Identities=19%  Similarity=0.199  Sum_probs=94.3

Q ss_pred             ccccEEEcccCcccccCCccccCccccceeccccc-ccccccCccccCCCCCCEEECcCCcCcccCcccccCCCCCCeEe
Q 045580          570 NYMTGLDFSCNELTGDIPSEIGSLSEIRALNLSHN-FLSGSIPQSLSNLKMIESLDLSHNDLSGQIPPQLTELNFLSNFN  648 (764)
Q Consensus       570 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  648 (764)
                      ...+.++.+++++. .+|..+..+++|+.|++++| .++...+..|.++++|+.|+|++|+|+...|..|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34567999999988 67888999999999999876 58866678899999999999999999988899999999999999


Q ss_pred             ccCCccccCCCCCCCCCCCCccccCCCCCCCC
Q 045580          649 VSYNHLSGPTPNAGQFANFDEQNYGGNSGLCG  680 (764)
Q Consensus       649 ls~N~l~g~~p~~~~~~~~~~~~~~gn~~lc~  680 (764)
                      |++|+|+...+...+...+....+.|||+-|.
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~  118 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLHCS  118 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             ccCCCCcccChhhhccccccccccCCCcccCC
Confidence            99999996545444455677788999999885

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=1.2e-12  Score=123.23  Aligned_cols=114  Identities=28%  Similarity=0.306  Sum_probs=78.8

Q ss_pred             CCChhHhhcCCCCcEEEcccCCCCccCCccccCCCCCCEEECCCCcccccCchhhhhCCCCCCEEEeecccccceeecCC
Q 045580          256 QLPGNMGKILPELLSLNLSENGFEVRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPN  335 (764)
Q Consensus       256 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~~  335 (764)
                      .++..+.. +++|++|+|++|.++. ++ .+..+++|++|++++|.+. .+|.. ...+++|+.|++++|.++....+..
T Consensus        39 ~l~~sl~~-L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~-~~~~~~L~~L~l~~N~i~~l~~~~~  113 (198)
T d1m9la_          39 KMDATLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENL-DAVADTLEELWISYNQIASLSGIEK  113 (198)
T ss_dssp             CCHHHHHH-TTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSH-HHHHHHCCEEECSEEECCCHHHHHH
T ss_pred             hhhhHHhc-ccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccc-ccccccccccccccccccccccccc
Confidence            45556654 8888888888888874 33 5788888888888888887 66643 2345567778887777776555666


Q ss_pred             CCCCceEEcccccCCCccc-ccccCCCCCCEEeCcCCccC
Q 045580          336 STNLCWLYLNNNHFSGKIQ-DGLSKATSLLELDLSNNMLY  374 (764)
Q Consensus       336 ~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~  374 (764)
                      +++|+.|++++|.++.... ..+..+++|+.|++++|++.
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            6777777777777764322 34666777777777777654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.7e-07  Score=81.01  Aligned_cols=80  Identities=23%  Similarity=0.175  Sum_probs=48.2

Q ss_pred             cccccEEEcccCccccc--CCccccCccccceecccccccccccCccccCCCCCCEEECcCCcCcccCcc-------ccc
Q 045580          569 LNYMTGLDFSCNELTGD--IPSEIGSLSEIRALNLSHNFLSGSIPQSLSNLKMIESLDLSHNDLSGQIPP-------QLT  639 (764)
Q Consensus       569 l~~L~~LdLs~N~l~~~--ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~-------~l~  639 (764)
                      ++.|++||||+|+++..  ++..+..+++|+.|+|++|+|+...+-.......|+.|++++|+++.....       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            45677777777777643  234456677777777777777643332333344577777777777654432       245


Q ss_pred             CCCCCCeEe
Q 045580          640 ELNFLSNFN  648 (764)
Q Consensus       640 ~l~~L~~L~  648 (764)
                      .+++|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            566666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.4e-07  Score=81.98  Aligned_cols=18  Identities=33%  Similarity=0.436  Sum_probs=10.1

Q ss_pred             cCCCCCCEEECcCCCCCC
Q 045580          382 GNLSGLQFLDISENQLSG  399 (764)
Q Consensus       382 ~~l~~L~~L~L~~n~l~~  399 (764)
                      ..+++|++|++++|+++.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~   79 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYR   79 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCC
T ss_pred             HhCCCCCEeeCCCccccC
Confidence            345556666666665553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.54  E-value=6.8e-05  Score=66.82  Aligned_cols=64  Identities=20%  Similarity=0.323  Sum_probs=42.4

Q ss_pred             CCCCCcEEECcCC-ccccc----CchhhcCCCCCCEEECCCCCCCCc----chhhhhCCCCCCEEECcCCCCC
Q 045580           70 ELKKLVELDLSKN-NLYGH----LSPCLSNLTHIKVLDLSSNQLTGN----LQSVIANIKSLEYLSLDDNNFE  133 (764)
Q Consensus        70 ~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~  133 (764)
                      +.++|++|+|+++ .+...    +..++...++|++|+|++|.++..    +...+...+.|++|++++|.++
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            3467888888764 45432    344566777788888888877632    3344556677888888877765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.42  E-value=6e-05  Score=67.16  Aligned_cols=63  Identities=13%  Similarity=0.019  Sum_probs=33.1

Q ss_pred             cCCCCCCEEEccCCcCCCcc----hhhhhcCCCccEEEccCCcCCcc-------CCccccCCCCCCEEeCCCCc
Q 045580          429 RRSSSLTVLDLRDNQFSGSI----PIWINEFSYLGILLLRGNQLKGN-------IPNQLCHLSLLNILDLSYNK  491 (764)
Q Consensus       429 ~~~~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~  491 (764)
                      ...+.|+.|++++|.+++..    ...+...++|++|++++|++...       +...+...++|+.|+++.+.
T Consensus        69 ~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          69 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            34455555555555555321    12334445566666665544321       23344456778888876654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.05  E-value=0.00052  Score=60.79  Aligned_cols=64  Identities=17%  Similarity=0.210  Sum_probs=40.8

Q ss_pred             CCCCCcEEECcC-Cccccc----CchhhcCCCCCCEEECCCCCCCCc----chhhhhCCCCCCEEECcCCCCC
Q 045580           70 ELKKLVELDLSK-NNLYGH----LSPCLSNLTHIKVLDLSSNQLTGN----LQSVIANIKSLEYLSLDDNNFE  133 (764)
Q Consensus        70 ~l~~L~~L~Ls~-n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~  133 (764)
                      +.+.|++|+|++ +.++..    +..++...++|++|+|++|.++..    +...+...++++.+++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            456777788776 345432    334556777777777777777643    2234556677777777777664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.82  E-value=0.00026  Score=62.88  Aligned_cols=18  Identities=6%  Similarity=0.078  Sum_probs=9.2

Q ss_pred             ccccCCCCCCEEECcCCc
Q 045580          612 QSLSNLKMIESLDLSHND  629 (764)
Q Consensus       612 ~~l~~l~~L~~LdLs~N~  629 (764)
                      ..+...+.|+.|+++.+.
T Consensus       126 ~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         126 NMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHCSSCCEEECCCSS
T ss_pred             HHHHhCCCcCEEeCcCCC
Confidence            334445555555555443