Citrus Sinensis ID: 045581

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPETTTSEDEKV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHEEccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEHHHHHHHHHHHEEEEcccccHHHHHHHHHHHHHHHHHHHHEcccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWygnasskpggkerrslslpksqkqsvpetttsedekv
Flexible Loop (DISEMBL)
FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGgkerrslslpksqkqsvpetttsedekv
Low Complexity Region (SEG)
FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPETTTSEDEKV
Disordered region (IsUnstruct)
*FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGN**********************************
Disordered Region (DISOPRED)
FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG***********************************
Disordered Region (DISEMBL)
FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNAS********************************
Disordered Region (DISPRO)
FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKP*****************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPETTTSEDEKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
Q9SRE4	347	UDP-galactose transporter	no	no	0.971	0.299	0.421	1e-17
Q8RXL8	357	Uncharacterized membrane	no	no	0.962	0.288	0.358	2e-12
Q5RKL7	350	Solute carrier family 35	yes	no	0.775	0.237	0.309	0.0006

>sp|Q9SRE4|UGAL2_ARATH UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 10/114 (8%)

Query: 1   FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILG 60
           F ++LSC++AV  N+SQ++CIGRF+A +FQVLGHMKT+ VL LG++ F  E +  + I G
Sbjct: 229 FCILLSCALAVFCNISQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSE-MTFKNIAG 287

Query: 61  MVIAVLGMIWYG---------NASSKPGGKERRSLSLPKSQKQSVPETTTSEDE 105
           M IA++GM+ Y          NA S P GK   +    K  K+ V      + E
Sbjct: 288 MAIAIVGMVIYSWAVDIEKQRNAKSTPHGKHSMTEDEIKLLKEGVEHIDLKDVE 341

UDP-galactose transporter that transports UDP-galactose, UDP-glucose and GDP-fucose.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXL8|Y1689_ARATH Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 3/106 (2%)

Query: 1   FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILG 60
           FF++LSC I+V  N S F+ IG+ + VT+QVLGH+KT LVL  G++   ++  + + ILG
Sbjct: 224 FFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL-RDPFDWRNILG 282

Query: 61  MVIAVLGMIWYGNASSKPGGKE--RRSLSLPKSQKQSVPETTTSED 104
           +++AV+GM+ Y    S    ++    S  LP+ ++        +E+
Sbjct: 283 ILVAVIGMVVYSYYCSIETQQKASETSTQLPQMKESEKDPLIAAEN 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RKL7|S35E4_RAT Solute carrier family 35 member E4 OS=Rattus norvegicus GN=Slc35e4 PE=2 SV=1

 Score = 43.1 bits (100), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 3   MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMV 62
           ++LSC ++V  NL+ F  +   +A+T  VLG++  +  L+L  + FG   L+    +G+ 
Sbjct: 258 VLLSCFLSVVYNLASFSLLALTSALTVHVLGNLTVVGNLILSRLLFGSH-LSALSYVGIA 316

Query: 63  IAVLGMIWYGNASSKPGGKERRSL 86
           + + GM  Y N  S      RR L
Sbjct: 317 LTLSGMFLYHNCESVASWATRRGL 340

Putative transporter.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
18420440	337	nucleotide sugar transporter-KT 1 [Arabi	0.990	0.314	0.831	2e-45
334187322	333	nucleotide sugar transporter-KT 1 [Arabi	0.990	0.318	0.831	2e-45
21593003	333	unknown [Arabidopsis thaliana]	0.990	0.318	0.831	2e-45
5042155	342	putative protein [Arabidopsis thaliana]	0.990	0.309	0.831	2e-45
297797924	342	hypothetical protein ARALYDRAFT_327889 [	0.990	0.309	0.813	3e-44
356509022	333	PREDICTED: UDP-galactose transporter 2-l	0.981	0.315	0.780	3e-43
358248518	333	uncharacterized protein LOC100800306 [Gl	0.981	0.315	0.771	1e-42
255586491	335	organic anion transporter, putative [Ric	0.990	0.316	0.777	3e-42
224096440	334	predicted protein [Populus trichocarpa]	0.981	0.314	0.768	5e-42
449446393	335	PREDICTED: UDP-galactose transporter 2-l	0.981	0.313	0.771	8e-42

>gi|18420440|ref|NP_568059.1| nucleotide sugar transporter-KT 1 [Arabidopsis thaliana] gi|30692341|ref|NP_849527.1| nucleotide sugar transporter-KT 1 [Arabidopsis thaliana] gi|20259516|gb|AAM13878.1| unknown protein [Arabidopsis thaliana] gi|23296523|gb|AAN13117.1| unknown protein [Arabidopsis thaliana] gi|332661666|gb|AEE87066.1| nucleotide sugar transporter-KT 1 [Arabidopsis thaliana] gi|332661667|gb|AEE87067.1| nucleotide sugar transporter-KT 1 [Arabidopsis thaliana]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/107 (83%), Positives = 99/107 (92%), Gaps = 1/107 (0%)

Query: 1   FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILG 60
           FF+ILSCSIAVGTNLSQFICIGRFTAV+FQVLGHMKTILVLVLGF FFGKEGLN+QV+LG
Sbjct: 232 FFLILSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLVLGFTFFGKEGLNLQVVLG 291

Query: 61  MVIAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPETTTSEDEKV 107
           M+IA+LGMIWYGNASSKPGGKERRSLS+P ++ Q + ET  S DEKV
Sbjct: 292 MLIAILGMIWYGNASSKPGGKERRSLSIPITKSQKLSETNES-DEKV 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187322|ref|NP_001190967.1| nucleotide sugar transporter-KT 1 [Arabidopsis thaliana] gi|332661668|gb|AEE87068.1| nucleotide sugar transporter-KT 1 [Arabidopsis thaliana]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/107 (83%), Positives = 99/107 (92%), Gaps = 1/107 (0%)

Query: 1   FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILG 60
           FF+ILSCSIAVGTNLSQFICIGRFTAV+FQVLGHMKTILVLVLGF FFGKEGLN+QV+LG
Sbjct: 228 FFLILSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLVLGFTFFGKEGLNLQVVLG 287

Query: 61  MVIAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPETTTSEDEKV 107
           M+IA+LGMIWYGNASSKPGGKERRSLS+P ++ Q + ET  S DEKV
Sbjct: 288 MLIAILGMIWYGNASSKPGGKERRSLSIPITKSQKLSETNES-DEKV 333

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593003|gb|AAM64952.1| unknown [Arabidopsis thaliana]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/107 (83%), Positives = 99/107 (92%), Gaps = 1/107 (0%)

Query: 1   FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILG 60
           FF+ILSCSIAVGTNLSQFICIGRFTAV+FQVLGHMKTILVLVLGF FFGKEGLN+QV+LG
Sbjct: 228 FFLILSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLVLGFTFFGKEGLNLQVVLG 287

Query: 61  MVIAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPETTTSEDEKV 107
           M+IA+LGMIWYGNASSKPGGKERRSLS+P ++ Q + ET  S DEKV
Sbjct: 288 MLIAILGMIWYGNASSKPGGKERRSLSIPITKSQKLSETNES-DEKV 333

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5042155|emb|CAB44674.1| putative protein [Arabidopsis thaliana] gi|7270923|emb|CAB80602.1| putative protein [Arabidopsis thaliana]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/107 (83%), Positives = 99/107 (92%), Gaps = 1/107 (0%)

Query: 1   FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILG 60
           FF+ILSCSIAVGTNLSQFICIGRFTAV+FQVLGHMKTILVLVLGF FFGKEGLN+QV+LG
Sbjct: 237 FFLILSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLVLGFTFFGKEGLNLQVVLG 296

Query: 61  MVIAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPETTTSEDEKV 107
           M+IA+LGMIWYGNASSKPGGKERRSLS+P ++ Q + ET  S DEKV
Sbjct: 297 MLIAILGMIWYGNASSKPGGKERRSLSIPITKSQKLSETNES-DEKV 342

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797924|ref|XP_002866846.1| hypothetical protein ARALYDRAFT_327889 [Arabidopsis lyrata subsp. lyrata] gi|297312682|gb|EFH43105.1| hypothetical protein ARALYDRAFT_327889 [Arabidopsis lyrata subsp. lyrata]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/107 (81%), Positives = 97/107 (90%), Gaps = 1/107 (0%)

Query: 1   FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILG 60
           FF+ILSCSIAVGTNLSQFICIGRFTAV+FQVLGHMKTILVLVLGF FFGKEGLN+QV+LG
Sbjct: 237 FFLILSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLVLGFTFFGKEGLNLQVVLG 296

Query: 61  MVIAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPETTTSEDEKV 107
           M+IA+LGMIWYGNASSKPG KERRSLS+P ++ Q + ET  S DE V
Sbjct: 297 MLIAILGMIWYGNASSKPGSKERRSLSIPITKSQKLSETNES-DEAV 342

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509022|ref|XP_003523251.1| PREDICTED: UDP-galactose transporter 2-like [Glycine max]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/105 (78%), Positives = 93/105 (88%)

Query: 2   FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGM 61
           F+ILSC+IAVGTNLSQFICIGRFTAVTFQVLGHMKTILVL+LGFIFFGKEGLN+ V+LGM
Sbjct: 228 FIILSCTIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLILGFIFFGKEGLNLHVVLGM 287

Query: 62  VIAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPETTTSEDEK 106
           +IA+ GM+WYGNASSKPGGKERRS SLPK+Q  S    ++  D K
Sbjct: 288 IIAIAGMVWYGNASSKPGGKERRSFSLPKTQDYSSLPVSSEPDTK 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248518|ref|NP_001239895.1| uncharacterized protein LOC100800306 [Glycine max] gi|255645628|gb|ACU23308.1| unknown [Glycine max]

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/105 (77%), Positives = 93/105 (88%)

Query: 2   FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGM 61
           F+ILSC+IAVGTNLSQFICIGRFTAVTFQVLGHMKTILVL+LGFIFFGKEGLN+ V+LGM
Sbjct: 228 FIILSCTIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLILGFIFFGKEGLNLHVVLGM 287

Query: 62  VIAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPETTTSEDEK 106
           +IA+ GM+WYG+ASSKPGGKERRS SLPK+Q  S    ++  D K
Sbjct: 288 IIAIAGMVWYGSASSKPGGKERRSFSLPKTQDYSSLPVSSEPDTK 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586491|ref|XP_002533887.1| organic anion transporter, putative [Ricinus communis] gi|223526164|gb|EEF28498.1| organic anion transporter, putative [Ricinus communis]

 Score =  175 bits (444), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/108 (77%), Positives = 97/108 (89%), Gaps = 2/108 (1%)

Query: 2   FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGM 61
           F++LSCSIAVGTNLSQFICIGRFTAV+FQVLGHMKTILVL+LGFIFFGKEGLN+QVI+GM
Sbjct: 228 FIVLSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLILGFIFFGKEGLNVQVIVGM 287

Query: 62  VIAVLGMIWYGNASSKPGGKERRSLSL--PKSQKQSVPETTTSEDEKV 107
           +IAV+GMIWYGNASSKPGGKERRSLS+   K+QK      ++  D+KV
Sbjct: 288 IIAVVGMIWYGNASSKPGGKERRSLSMNGNKAQKHDGLSKSSEVDDKV 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096440|ref|XP_002310620.1| predicted protein [Populus trichocarpa] gi|118483308|gb|ABK93556.1| unknown [Populus trichocarpa] gi|222853523|gb|EEE91070.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 83/108 (76%), Positives = 97/108 (89%), Gaps = 3/108 (2%)

Query: 1   FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILG 60
            F+++SCSIAVGTNLSQFICIGRFTAV+FQVLGHMKTILVL+LGFIFFGKEGLN+ V++G
Sbjct: 226 LFIVVSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLILGFIFFGKEGLNLHVVVG 285

Query: 61  MVIAVLGMIWYGNASSKPGGKERRSLSL--PKSQKQS-VPETTTSEDE 105
           M+IAV GMIWYGNASSKPGGKERRSLS+   KSQK   +PE+T  +D+
Sbjct: 286 MIIAVAGMIWYGNASSKPGGKERRSLSMNGNKSQKHDGLPESTEVDDK 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446393|ref|XP_004140956.1| PREDICTED: UDP-galactose transporter 2-like [Cucumis sativus]

 Score =  174 bits (440), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 81/105 (77%), Positives = 93/105 (88%)

Query: 2   FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGM 61
           F+ILSCSIAVGTNLSQFICIGRFTAV+FQVLGHMKTILVL++GF FFGKEGLNMQV+LGM
Sbjct: 228 FIILSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGKEGLNMQVVLGM 287

Query: 62  VIAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPETTTSEDEK 106
           +IAV+GMIWYGNASSKPGGKERRS +LP +++Q     T S +  
Sbjct: 288 IIAVIGMIWYGNASSKPGGKERRSHTLPTARQQKHGGLTDSAEHD 332

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
TAIR|locus:2122467	337	NST-K1 "nucleotide sugar trans	0.990	0.314	0.831	2.8e-43
TAIR|locus:2009076	335	AT1G34020 [Arabidopsis thalian	0.981	0.313	0.714	7.8e-39
TAIR|locus:2118514	335	AT4G09810 [Arabidopsis thalian	0.981	0.313	0.704	7e-38
TAIR|locus:2199557	348	AT1G21070 [Arabidopsis thalian	0.859	0.264	0.479	2e-17
TAIR|locus:2030076	347	AT1G76670 [Arabidopsis thalian	0.878	0.270	0.469	3.4e-17
TAIR|locus:2162271	350	AT5G42420 [Arabidopsis thalian	0.906	0.277	0.407	1e-16
TAIR|locus:2064316	353	AT2G30460 "AT2G30460" [Arabido	0.654	0.198	0.478	9.3e-14
TAIR|locus:2033097	357	AT1G06890 [Arabidopsis thalian	0.654	0.196	0.464	3.5e-13
TAIR|locus:504955965	342	AT2G28315 [Arabidopsis thalian	0.644	0.201	0.485	3.1e-11
UNIPROTKB|F1LN55	161	Slc35e4 "Solute carrier family	0.775	0.515	0.309	4.3e-06

TAIR|locus:2122467 NST-K1 "nucleotide sugar transporter-KT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 89/107 (83%), Positives = 99/107 (92%)

Query:     1 FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILG 60
             FF+ILSCSIAVGTNLSQFICIGRFTAV+FQVLGHMKTILVLVLGF FFGKEGLN+QV+LG
Sbjct:   232 FFLILSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLVLGFTFFGKEGLNLQVVLG 291

Query:    61 MVIAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPETTTSEDEKV 107
             M+IA+LGMIWYGNASSKPGGKERRSLS+P ++ Q + ET  S DEKV
Sbjct:   292 MLIAILGMIWYGNASSKPGGKERRSLSIPITKSQKLSETNES-DEKV 337

GO:0005886 "plasma membrane" evidence=ISM

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IDA

GO:0015780 "nucleotide-sugar transport" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2009076 AT1G34020 [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 75/105 (71%), Positives = 94/105 (89%)

Query:     2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGM 61
             F+ LSC+IA+GTNLSQFICIGRFTAV+FQVLGHMKTILVL++GF FFG+EGLN+ V++GM
Sbjct:   228 FITLSCTIAIGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGREGLNLHVVVGM 287

Query:    62 VIAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPETTTSEDEK 106
             +IAVLGMIWYGNASSKPGGKERR+ SLP +++Q +   + S+D +
Sbjct:   288 IIAVLGMIWYGNASSKPGGKERRNYSLPTTRQQKLGAASDSDDNE 332

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2118514 AT4G09810 [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 74/105 (70%), Positives = 94/105 (89%)

Query:     2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGM 61
             F+ LSC+IA+GTNLSQFICIGRFTAV+FQVLGHMKTILVLV+GF FF ++GLN+ VILGM
Sbjct:   228 FITLSCTIAIGTNLSQFICIGRFTAVSFQVLGHMKTILVLVMGFFFFDRDGLNLHVILGM 287

Query:    62 VIAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPETTTSEDEK 106
             +IAVLGMIWYGNASSKPGGKE+++ SLP +++Q +  T+ S++ +
Sbjct:   288 IIAVLGMIWYGNASSKPGGKEKKNYSLPTTRQQKLGATSDSDEHR 332

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2199557 AT1G21070 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 46/96 (47%), Positives = 67/96 (69%)

Query:     3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMV 62
             ++LSC++AV  N+SQ++CIGRF+A +FQVLGHMKT+ VL LG++ F  E +  + I GMV
Sbjct:   232 ILLSCALAVFCNISQYLCIGRFSATSFQVLGHMKTVCVLTLGWLIFDSE-MTFKNIAGMV 290

Query:    63 IAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPE 98
             +AV+GM+ Y  A      K+R+S  +P   K S+ E
Sbjct:   291 LAVVGMVIYSWAVELE--KQRKSKVIPHG-KHSMTE 323

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2030076 AT1G76670 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 3.4e-17, P = 3.4e-17
 Identities = 46/98 (46%), Positives = 66/98 (67%)

Query:     1 FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILG 60
             F ++LSC++AV  N+SQ++CIGRF+A +FQVLGHMKT+ VL LG++ F  E +  + I G
Sbjct:   229 FCILLSCALAVFCNISQYLCIGRFSATSFQVLGHMKTVCVLTLGWLLFDSE-MTFKNIAG 287

Query:    61 MVIAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPE 98
             M IA++GM+ Y  A      K+R + S P   K S+ E
Sbjct:   288 MAIAIVGMVIYSWAVDIE--KQRNAKSTPHG-KHSMTE 322

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005457 "GDP-fucose transmembrane transporter activity" evidence=IDA

GO:0005459 "UDP-galactose transmembrane transporter activity" evidence=IDA

GO:0005460 "UDP-glucose transmembrane transporter activity" evidence=IDA

GO:0015783 "GDP-fucose transport" evidence=IDA

GO:0015786 "UDP-glucose transport" evidence=IDA

GO:0072334 "UDP-galactose transmembrane transport" evidence=IDA

GO:0009624 "response to nematode" evidence=IEP

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2162271 AT5G42420 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 42/103 (40%), Positives = 69/103 (66%)

Query:     2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGM 61
             F++LSC +AV  N+SQ++CIGRF+AV+FQV+GHMKT+ +L LG++ F    +  + + GM
Sbjct:   231 FILLSCGLAVFCNISQYLCIGRFSAVSFQVIGHMKTVCILTLGWLLFDS-AMTFKNVAGM 289

Query:    62 VIAVLGMIWYGNASSKPGGKERRSLSLPKSQKQSVPETTTSED 104
             ++A++GM+ Y  A       E++S+   K+   SV  + T E+
Sbjct:   290 IVAIVGMVIYSWAMEL----EKQSIIAAKALN-SVKHSLTEEE 327

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2064316 AT2G30460 "AT2G30460" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 9.3e-14, P = 9.3e-14
 Identities = 34/71 (47%), Positives = 52/71 (73%)

Query:     1 FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILG 60
             FF++LSC I+V  N S F+ IG+ + VT+QVLGH+KT LVL  G++   K+  + + ILG
Sbjct:   224 FFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYLLL-KDAFSWRNILG 282

Query:    61 MVIAVLGMIWY 71
             +++AV+GM+ Y
Sbjct:   283 ILVAVIGMVLY 293

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2033097 AT1G06890 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 3.5e-13, P = 3.5e-13
 Identities = 33/71 (46%), Positives = 52/71 (73%)

Query:     1 FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILG 60
             FF++LSC I+V  N S F+ IG+ + VT+QVLGH+KT LVL  G++   ++  + + ILG
Sbjct:   224 FFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLL-RDPFDWRNILG 282

Query:    61 MVIAVLGMIWY 71
             +++AV+GM+ Y
Sbjct:   283 ILVAVIGMVVY 293

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:504955965 AT2G28315 [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 34/70 (48%), Positives = 46/70 (65%)

Query:     2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGM 61
             F+ LSC IAV  N S F+ IG+ + VT+QVLGH+KT LVL  G+     +    + I G+
Sbjct:   225 FITLSCLIAVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYTLL-HDPFTPRNIAGI 283

Query:    62 VIAVLGMIWY 71
             +IAVLGM+ Y
Sbjct:   284 LIAVLGMLLY 293

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|F1LN55 Slc35e4 "Solute carrier family 35 member E4" [Rattus norvegicus (taxid:10116)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 26/84 (30%), Positives = 44/84 (52%)

Query:     3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMV 62
             ++LSC ++V  NL+ F  +   +A+T  VLG++  +  L+L  + FG   L+    +G+ 
Sbjct:    69 VLLSCFLSVVYNLASFSLLALTSALTVHVLGNLTVVGNLILSRLLFGSH-LSALSYVGIA 127

Query:    63 IAVLGMIWYGNASSKPGGKERRSL 86
             + + GM  Y N  S      RR L
Sbjct:   128 LTLSGMFLYHNCESVASWATRRGL 151

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	NST-K1	NST-K1 (NUCLEOTIDE SUGAR TRANSPORTER-KT 1); nucleotide-sugar transmembrane transporter; Encodes a golgi localized nucleotide sugar transporter. (337 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	UGE1	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1); UDP-glucose 4-epimerase/ protein dimerizati [...] (351 aa)							•		0.467
	GALT1	GALT1 (GALACTOSYLTRANSFERASE1); UDP-galactose-N-glycan beta-1,3-galactosyltransferase/ transfer [...] (643 aa)							•		0.463
	ATCSLC04	ATCSLC04 (CELLULOSE-SYNTHASE LIKE C4); cellulose synthase/ transferase, transferring glycosyl g [...] (673 aa)							•		0.409

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	107
pfam03151	149	pfam03151, TPT, Triose-phosphate Transporter famil	5e-18
PTZ00343	350	PTZ00343, PTZ00343, triose or hexose phosphate/pho	9e-05

>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family

 Score = 73.4 bits (181), Expect = 5e-18
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 1   FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILG 60
             ++LS  +A   NLS F  +GR + +T  V G +K ++V+VL  I FG   +    ILG
Sbjct: 78  LLLLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVIVLSVIIFGDP-VTFLNILG 136

Query: 61  MVIAVLGMIWYGN 73
           + IA+LG++ Y  
Sbjct: 137 LAIAILGVVLYSY 149

This family includes transporters with a specificity for triose phosphate. Length = 149

>gnl|CDD|240371 PTZ00343, PTZ00343, triose or hexose phosphate/phosphate translocator; Provisional

 Score = 39.3 bits (92), Expect = 9e-05
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 1   FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILG 60
           F +  S       N   F C+G+   VT  V   +K ++++V   I F  + + +   LG
Sbjct: 277 FKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQ-VTLLGYLG 335

Query: 61  MVIAVLGMIWY 71
           M +A+LG + Y
Sbjct: 336 MAVAILGALLY 346

Length = 350

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.74
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.74
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.53
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.41
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.28
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.22
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.02
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.94
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.9
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.4
PLN00411	358	nodulin MtN21 family protein; Provisional	97.88
KOG1580	337	consensus UDP-galactose transporter related protei	97.84
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.78
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	97.67
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.61
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.5
KOG1581	327	consensus UDP-galactose transporter related protei	97.36
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.34
PRK11689	295	aromatic amino acid exporter; Provisional	96.95
PRK15430	296	putative chloramphenical resistance permease RarD;	96.92
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	96.83
PLN00411	358	nodulin MtN21 family protein; Provisional	96.69
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	96.69
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	96.68
PF13536	113	EmrE: Multidrug resistance efflux transporter	96.64
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	96.61
PRK15430	296	putative chloramphenical resistance permease RarD;	96.56
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	96.51
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	96.51
PRK11272	292	putative DMT superfamily transporter inner membran	96.43
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.1
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	95.95
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	95.91
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	95.86
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	95.79
PRK09541	110	emrE multidrug efflux protein; Reviewed	95.61
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	95.6
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	95.54
KOG3912	372	consensus Predicted integral membrane protein [Gen	95.53
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	95.46
COG0697	292	RhaT Permeases of the drug/metabolite transporter	95.25
COG2076	106	EmrE Membrane transporters of cations and cationic	95.21
PRK10650	109	multidrug efflux system protein MdtI; Provisional	95.0
COG2510	140	Predicted membrane protein [Function unknown]	94.87
PRK11431	105	multidrug efflux system protein; Provisional	94.86
PRK11689	295	aromatic amino acid exporter; Provisional	94.32
COG0697	292	RhaT Permeases of the drug/metabolite transporter	94.31
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	93.53
KOG2765	416	consensus Predicted membrane protein [Function unk	93.1
KOG1582	367	consensus UDP-galactose transporter related protei	92.91
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	92.69
PRK11272	292	putative DMT superfamily transporter inner membran	91.79
COG2962	293	RarD Predicted permeases [General function predict	91.49
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	90.24
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	90.1
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	88.85
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	87.69
KOG2766	336	consensus Predicted membrane protein [Function unk	86.56
KOG4812	262	consensus Golgi-associated protein/Nedd4 WW domain	86.05
KOG4510	346	consensus Permease of the drug/metabolite transpor	84.43
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	84.28

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.74  E-value=5.9e-19  Score=139.33  Aligned_cols=79  Identities=38%  Similarity=0.661  Sum_probs=73.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCccc
Q 045581            3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGKE   82 (107)
Q Consensus         3 lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~~   82 (107)
                      +++..+++|++|++.|+++++|||+||+|+|++|++++++.||++|+ +|+|+.|..|++++++|.++|++.|.++++++
T Consensus       238 ~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~-~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~~  316 (316)
T KOG1441|consen  238 LLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFG-NPVTFLNALGYAIAILGVFLYSRAKLKEKKGK  316 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeec-CCCchhhHHHHHHHHHHHHHHHHHhhhhhccC
Confidence            34455999999999999999999999999999999999999999998 59999999999999999999999999887653

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.74  E-value=3.1e-18  Score=118.80  Aligned_cols=71  Identities=41%  Similarity=0.696  Sum_probs=68.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581            2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGN   73 (107)
Q Consensus         2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~   73 (107)
                      .++++|++++++|+++|++++++||+|++|+|++|+++++++|+++|| |++|+.++.|+.+++.|+++|+|
T Consensus        83 ~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~-~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   83 LLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFG-EPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcC-CcCCHHHHHHHHHHHHHHheeeC
Confidence            578899999999999999999999999999999999999999999999 58999999999999999999986

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=1.1e-14  Score=114.69  Aligned_cols=81  Identities=25%  Similarity=0.538  Sum_probs=75.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCcc
Q 045581            2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGK   81 (107)
Q Consensus         2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~   81 (107)
                      .+++||+++|.+|++.++|...+||+|++++| +|+.+.+.++++.++|.++++.+++|+.+.+.|..+|++.+.++++.
T Consensus       230 ~~~lScv~gf~isy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~  308 (314)
T KOG1444|consen  230 VMLLSCVMGFGISYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ  308 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence            46899999999999999999999999999999 99999999999999889999999999999999999999999887766


Q ss_pred             cc
Q 045581           82 ER   83 (107)
Q Consensus        82 ~~   83 (107)
                      ++
T Consensus       309 ~~  310 (314)
T KOG1444|consen  309 PP  310 (314)
T ss_pred             CC
Confidence            55

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.41  E-value=5.4e-13  Score=105.55  Aligned_cols=72  Identities=26%  Similarity=0.457  Sum_probs=69.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhc
Q 045581            3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNAS   75 (107)
Q Consensus         3 lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k   75 (107)
                      ++.+|+.++++|.++|++++++||+|++|.+++|+++++++|+++|| |++|+.+++|.+++++|.++|++.|
T Consensus       279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~g-e~lt~~~~iG~~lii~Gv~lYs~~k  350 (350)
T PTZ00343        279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQ-TQVTLLGYLGMAVAILGALLYSLFK  350 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhC-CCCchHhHHHHHHHHHHHHHHhhcC
Confidence            56789999999999999999999999999999999999999999999 6999999999999999999999874

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=1.3e-13  Score=108.09  Aligned_cols=90  Identities=16%  Similarity=0.125  Sum_probs=82.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCcc
Q 045581            2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGK   81 (107)
Q Consensus         2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~   81 (107)
                      ++.+||+++|.+|+.+++.|+.|||+||+|.|..|.+.+.++++.+++ |..+...+.|-.+.+.|+..|++.|..|.++
T Consensus       257 ~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~-E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~  335 (347)
T KOG1442|consen  257 LMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYS-ETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK  335 (347)
T ss_pred             HHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHH-HHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence            478999999999999999999999999999999999999999999998 6899999999999999999999999999888


Q ss_pred             cccccCCCccc
Q 045581           82 ERRSLSLPKSQ   92 (107)
Q Consensus        82 ~~~~~~~~~~~   92 (107)
                      +.+++|.+..|
T Consensus       336 ~~~~~s~~~~~  346 (347)
T KOG1442|consen  336 ASAQRSPATQK  346 (347)
T ss_pred             hccCCCccccc
Confidence            77776665544

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.22  E-value=2.7e-11  Score=92.90  Aligned_cols=72  Identities=25%  Similarity=0.444  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCcc
Q 045581            9 IAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGK   81 (107)
Q Consensus         9 laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~   81 (107)
                      ..++.|...|.+++++||+|.++.+.+|.++.+++|++++| |++|+.+++|..+++.|.++|++.|.++++.
T Consensus       230 ~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lg-e~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~  301 (302)
T TIGR00817       230 FFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFG-TKISPQQVFGTGIAIAGVFLYSRVKAQKPKP  301 (302)
T ss_pred             HHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcC-CCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence            56677889999999999999999999999999999999998 6899999999999999999999987665543

specificities overlap.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.02  E-value=9.3e-10  Score=85.05  Aligned_cols=77  Identities=23%  Similarity=0.442  Sum_probs=70.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCC
Q 045581            2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPG   79 (107)
Q Consensus         2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~   79 (107)
                      .+++.++.+++-+...+.+++++||++.++++.+|+.+++++|+++|| +++++.+++|+.+.+.|..+|++.|.+++
T Consensus       227 ~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~-~~~~~~~~~G~~lv~~g~~~~~~~~~k~~  303 (303)
T PF08449_consen  227 YLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFG-HPLSPLQWIGIVLVFAGIFLYSYAKKKKN  303 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcC-CcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence            356778888888888899999999999999999999999999999998 79999999999999999999999988764

; GO: 0055085 transmembrane transport

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.94  E-value=1.7e-09  Score=85.84  Aligned_cols=71  Identities=24%  Similarity=0.444  Sum_probs=67.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581            2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGN   73 (107)
Q Consensus         2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~   73 (107)
                      .+.+.|.++|++-+++|.+..+||.+|.+++|++|++++++++.++-+| .++..++.|..+++.|...|.+
T Consensus       245 ~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d-~ls~lN~~Gl~i~~agi~~~~~  315 (349)
T KOG1443|consen  245 LISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKD-QLSLLNWLGLAICLAGILLHRN  315 (349)
T ss_pred             HHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHHHHhcc
Confidence            4678999999999999999999999999999999999999999999985 7999999999999999999933

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.90  E-value=7.3e-10  Score=85.35  Aligned_cols=78  Identities=22%  Similarity=0.423  Sum_probs=73.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCc
Q 045581            2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGG   80 (107)
Q Consensus         2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~   80 (107)
                      .+++||++++.+.+++-||+..||+.|++++|.+++..+.+.|.++|| +|.+...+..+.+.+.....|+++|.+++|
T Consensus       226 am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffd-ap~nf~si~sillGflsg~iYavaks~k~q  303 (309)
T COG5070         226 AMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFD-APVNFLSIFSILLGFLSGAIYAVAKSKKQQ  303 (309)
T ss_pred             HHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999999999999999997 799999999999999999999999876443

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.40  E-value=5e-07  Score=71.25  Aligned_cols=77  Identities=13%  Similarity=0.304  Sum_probs=70.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCC
Q 045581            2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPG   79 (107)
Q Consensus         2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~   79 (107)
                      .++.+++.-++=-=..|.+..+|++||.+++=++++.+.+++|+++|+ ||+|+..++|..+.+.|.++|+....+.+
T Consensus       244 yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~-Npft~~h~lGa~lVF~Gt~~fa~~~~~~~  320 (330)
T KOG1583|consen  244 YLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFE-NPFTPWHWLGAALVFFGTLLFANVWNHPK  320 (330)
T ss_pred             HHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEec-CCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            467777777777777888889999999999999999999999999997 89999999999999999999999887766

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.88  E-value=8.1e-05  Score=59.67  Aligned_cols=71  Identities=14%  Similarity=0.267  Sum_probs=61.7

Q ss_pred             HHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCcccccccC
Q 045581           16 SQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGKERRSLS   87 (107)
Q Consensus        16 s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~~~~~~~   87 (107)
                      .-++++++.+|...++...+--++.+++|++++| |++++.+++|.++.+.|..+-++.+.+|.+++..+-+
T Consensus       272 lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~Lg-E~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~~~~  342 (358)
T PLN00411        272 IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLN-DSLYLGCLIGGILITLGFYAVMWGKANEEKDQLLSFS  342 (358)
T ss_pred             HHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCcc
Confidence            3456899999999999999999999999999999 7999999999999999999988877766555555544

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.84  E-value=5.3e-05  Score=59.23  Aligned_cols=67  Identities=13%  Similarity=0.228  Sum_probs=59.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHH
Q 045581            4 ILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWY   71 (107)
Q Consensus         4 llsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Y   71 (107)
                      .+-++.+.+=....|+.+...+|||.+|+-..++.+++++|+++|+ ||++.+|++|..+.+.|...=
T Consensus       245 ~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~-npls~rQwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  245 TLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFN-NPLSGRQWLGTVLVFSALTAD  311 (337)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHhhhH
Confidence            3445556666788999999999999999999999999999999998 899999999999999887553

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.78  E-value=8.9e-05  Score=56.60  Aligned_cols=77  Identities=19%  Similarity=0.311  Sum_probs=71.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCC
Q 045581            2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPG   79 (107)
Q Consensus         2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~   79 (107)
                      .+.+.+++....|...|......+|.|++|....|-+.+.++++++++ .+++..+++++.+.+.|..+.+.......
T Consensus        19 ~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~-r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~   95 (244)
T PF04142_consen   19 KLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLK-RRLSRRQWLALFLLVAGVVLVQLSSSQSS   95 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHH-cccchhhHHHHHHHHHHHheeecCCcccc
Confidence            356789999999999999999999999999999999999999999999 58999999999999999999888766653

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00803 nst UDP-galactose transporter

Probab=97.67  E-value=1.7e-05  Score=58.51  Aligned_cols=61  Identities=18%  Similarity=0.237  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHH
Q 045581           10 AVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWY   71 (107)
Q Consensus        10 af~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Y   71 (107)
                      .....++..+++++.|+++.+++..++.++..++|+++|| +++++.++.|..+.+.|.++|
T Consensus       162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~-~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFD-AKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHeeeEeC
Confidence            3334466889999999999999999999999999999998 799999999999999998877

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.61  E-value=0.00044  Score=53.15  Aligned_cols=65  Identities=23%  Similarity=0.283  Sum_probs=57.5

Q ss_pred             HHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCcc
Q 045581           16 SQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGK   81 (107)
Q Consensus        16 s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~   81 (107)
                      .-+..+++.+|...++...+--++.++.|++++| |++++.+++|..+.+.|.+.++....+|.+.
T Consensus       225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lg-E~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~  289 (293)
T PRK10532        225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLG-ETLTLIQWLALGAIIAASMGSTLTIRREPKI  289 (293)
T ss_pred             HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            3467899999999999999999999999999998 7899999999999999999998776554443

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.50  E-value=0.00041  Score=55.58  Aligned_cols=66  Identities=20%  Similarity=0.301  Sum_probs=56.4

Q ss_pred             HHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCccc
Q 045581           16 SQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGKE   82 (107)
Q Consensus        16 s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~~   82 (107)
                      ..-.++..+||+.+++.-..=+...++.++++|| +++++.-++|.++.+.|.++|+....++.++.
T Consensus       249 l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~-~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~~  314 (334)
T PF06027_consen  249 LVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFG-YKFSWLYILAFALIIIGFVVYNLAESPEEEAR  314 (334)
T ss_pred             HHHHHHHhCccceeehHHHHhhHHHHHHHHHhcC-ccccHHHHHHHHHHHHHhheEEccCCcccccc
Confidence            3345789999999999888889999999999998 68999999999999999999998766544433

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.36  E-value=0.00017  Score=57.52  Aligned_cols=71  Identities=24%  Similarity=0.351  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCC
Q 045581            8 SIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPG   79 (107)
Q Consensus         8 ~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~   79 (107)
                      +++-.=.+..|..+.+-.|+|++++-..++.+.+.++.++|| +++++.|+.|..+.+.|.++=.+.|.+++
T Consensus       249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~-h~~s~~q~~g~~iVFg~i~l~~~~k~~~~  319 (327)
T KOG1581|consen  249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFG-HPLSSEQWLGVLIVFGGIFLEILLKKKKN  319 (327)
T ss_pred             HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhC-CccchhhccCeeeehHHHHHHHHHHHhcc
Confidence            334444456788999999999999999999999999999998 79999999999999999988777776633

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.34  E-value=0.00069  Score=44.06  Aligned_cols=67  Identities=18%  Similarity=0.442  Sum_probs=58.4

Q ss_pred             hHHHH-HHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581            5 LSCSI-AVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG   72 (107)
Q Consensus         5 lsg~l-af~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys   72 (107)
                      ..|++ ..+-++.-+...+++++-..++....--++..++++++++ |++++.+++|+.+.+.|.++-+
T Consensus        58 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~-e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   58 FLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLG-ERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            34444 4666777888899999999999999999999999999998 7899999999999999998754

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK11689 aromatic amino acid exporter; Provisional

Probab=96.95  E-value=0.0036  Score=48.12  Aligned_cols=63  Identities=10%  Similarity=0.019  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581           10 AVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGN   73 (107)
Q Consensus        10 af~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~   73 (107)
                      ..+--+.-+..+++.+|...++...+.=++.+++|++++| |++++.+++|..+.+.|..+-..
T Consensus       225 t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lg-E~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        225 MGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLS-TPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHhHHHHhh
Confidence            3333445578899999999999999999999999999998 79999999999999999866644

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.92  E-value=0.0038  Score=48.04  Aligned_cols=74  Identities=11%  Similarity=0.139  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCc
Q 045581            6 SCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGG   80 (107)
Q Consensus         6 sg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~   80 (107)
                      .|+.+..-.++-+..+++.+|-..+....+.-++.++.|++++| |++++.+++|..+.+.|..+.........|
T Consensus       219 ~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~-E~~~~~~~~G~~lI~~~~~v~~~~~~~~~~  292 (296)
T PRK15430        219 AGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYG-EKPGADKMVTFAFIWVALAIFVMDAIYTQR  292 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34344445567778899999999999999999999999999998 799999999999998888877766554433

>TIGR00688 rarD rarD protein

Probab=96.83  E-value=0.0061  Score=45.56  Aligned_cols=67  Identities=15%  Similarity=0.219  Sum_probs=59.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHH
Q 045581            3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIW   70 (107)
Q Consensus         3 lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~   70 (107)
                      +.+.|++....+.+-+..++++++-+-++....--+.+.++++++++ |+++..++.|+.+++.|+.+
T Consensus        73 ~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~-Ek~~~~~~l~~~~~~~Gv~l  139 (256)
T TIGR00688        73 LLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLK-ERISRFQFIAVIIATLGVIS  139 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence            45567776777788888899999999999999999999999999998 79999999999999999874

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=96.69  E-value=0.0077  Score=48.34  Aligned_cols=70  Identities=16%  Similarity=0.269  Sum_probs=61.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhc------cCCcccchhhHHHHHHHHHHHHHHhh
Q 045581            3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIF------FGKEGLNMQVILGMVIAVLGMIWYGN   73 (107)
Q Consensus         3 lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~------fg~~~~t~~~~~G~~l~~~G~~~Ys~   73 (107)
                      +++.|++++..+...+.-.+++||..-++....-=+.+.++++++      ++ |+.+..+++|+++++.|..+=..
T Consensus        81 l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~-er~~~~~~~G~~l~~~Gv~ll~~  156 (358)
T PLN00411         81 IGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFK-ERSSVAKVMGTILSLIGALVVIF  156 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhc-ccccHHHHHHHHHHHHHHHHHHH
Confidence            456677776777788899999999999999999999999999999      67 79999999999999999986443

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=96.69  E-value=0.0074  Score=44.63  Aligned_cols=69  Identities=16%  Similarity=0.149  Sum_probs=58.0

Q ss_pred             hhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581            4 ILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGN   73 (107)
Q Consensus         4 llsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~   73 (107)
                      +++++...+.+..-|..++++++-.-++.-...-+.+.++++++++ |++++.+++|+.+++.|..+...
T Consensus        51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~-e~~~~~~~~gi~i~~~Gv~li~~  119 (260)
T TIGR00950        51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGK-ERPRKLVLLAAVLGLAGAVLLLS  119 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHcc-CCCcHHHHHHHHHHHHhHHhhcc
Confidence            3444445566677788999998888888888999999999999998 79999999999999999988753

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=96.68  E-value=0.0078  Score=46.10  Aligned_cols=68  Identities=12%  Similarity=0.233  Sum_probs=60.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHH
Q 045581            3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWY   71 (107)
Q Consensus         3 lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Y   71 (107)
                      ++..|++..+.+...+..++++|+-..++.-..--+++.++++++++ |+++..++.|+.++++|+.+-
T Consensus        68 ~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~-e~~~~~~~~~l~l~~~Gv~l~  135 (302)
T TIGR00817        68 LLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLG-QEFPSTLWLSLLPIVGGVALA  135 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHhhh
Confidence            34456666777788999999999999999999999999999999998 799999999999999999764

specificities overlap.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=96.64  E-value=0.018  Score=38.37  Aligned_cols=71  Identities=20%  Similarity=0.315  Sum_probs=54.2

Q ss_pred             hhHHHHHH-HHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhcc
Q 045581            4 ILSCSIAV-GTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASS   76 (107)
Q Consensus         4 llsg~laf-~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~   76 (107)
                      ++.|+++. .-+..-++-.+...+ ..++.-.+--++..++|+++|+ |+++..+++|..+++.|+++=.+...
T Consensus        38 ~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~-er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   38 ILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFK-ERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            34466665 445555566666665 5557777788899999999998 79999999999999999988666543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=96.61  E-value=0.011  Score=45.05  Aligned_cols=69  Identities=20%  Similarity=0.238  Sum_probs=58.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581            3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG   72 (107)
Q Consensus         3 lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys   72 (107)
                      ++++++......++.+...++.++-.-++.....-+...+++++++| |+++..+++|+.+++.|..+=.
T Consensus        66 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~-e~~~~~~~~g~~~~~~Gv~ll~  134 (281)
T TIGR03340        66 LAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLG-ETLSPLAWLGILIITLGLLVLG  134 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHh
Confidence            45677777778888888888888888888888889999999999998 6999999999999999987644

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=96.56  E-value=0.013  Score=45.07  Aligned_cols=67  Identities=19%  Similarity=0.306  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581            5 LSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG   72 (107)
Q Consensus         5 lsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys   72 (107)
                      ++++.....+.+-|+.++++++..-++....--+.+.++++++++ |+++..+++|+.+++.|..+-.
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~-E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLG-ERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHH
Confidence            455556667888899999999999999999999999999999998 7999999999999999988654

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=96.51  E-value=0.014  Score=44.94  Aligned_cols=57  Identities=18%  Similarity=0.234  Sum_probs=49.6

Q ss_pred             HHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhcc
Q 045581           19 ICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASS   76 (107)
Q Consensus        19 ~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~   76 (107)
                      ..+++..|.+.++...+-=++.++.|++++| |++++.+++|..+.+.|..+=.+.+.
T Consensus       234 ~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lg-E~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        234 TLLGRYETWRVAPLSLLVPVVGLASAALLLD-ERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHhcchh
Confidence            4568889999999999999999999999998 78999999999999999987555443

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=96.51  E-value=0.01  Score=43.85  Aligned_cols=64  Identities=14%  Similarity=0.269  Sum_probs=53.2

Q ss_pred             hhHHHHHHHH-HHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHH
Q 045581            4 ILSCSIAVGT-NLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGM   68 (107)
Q Consensus         4 llsg~laf~l-N~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~   68 (107)
                      +..|+++..+ ...-+..+++.++.+.++...+.-+..++++++++| |++++.+++|..+.+.|.
T Consensus       195 ~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~-E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       195 LYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILG-ETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhc
Confidence            3344444333 334566899999999999999999999999999998 799999999999999886

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=96.43  E-value=0.021  Score=43.75  Aligned_cols=61  Identities=11%  Similarity=0.113  Sum_probs=54.3

Q ss_pred             HHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhcc
Q 045581           15 LSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASS   76 (107)
Q Consensus        15 ~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~   76 (107)
                      ..-+..+++.++-..++...+.-+...+.|++++| |++|+.+++|..+.+.|.++-+..+.
T Consensus       228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~-E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGG-ETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            35566788999999999999999999999999998 79999999999999999998876443

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.10  E-value=0.031  Score=43.18  Aligned_cols=80  Identities=14%  Similarity=0.216  Sum_probs=68.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCcccc
Q 045581            4 ILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGKER   83 (107)
Q Consensus         4 llsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~~~   83 (107)
                      +.-+++-++-+..+.....+.|-=++.+.=..|-+.+.++|+++++ .+.++.++.+.++.++|.+++...+.++++...
T Consensus        68 ~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~-k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~  146 (303)
T PF08449_consen   68 AILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILG-KRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSN  146 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcC-ccccHHHHHHHHHHHhhHheeeecccccccccc
Confidence            3456667777788889999999999999999999999999999998 589999999999999999999988766555443


Q ss_pred             c
Q 045581           84 R   84 (107)
Q Consensus        84 ~   84 (107)
                      .
T Consensus       147 ~  147 (303)
T PF08449_consen  147 S  147 (303)
T ss_pred             c
Confidence            3

; GO: 0055085 transmembrane transport

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=95.95  E-value=0.069  Score=37.25  Aligned_cols=68  Identities=16%  Similarity=0.244  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhccChhhh--hhhhhhhhHHHHhhhh--hccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581            4 ILSCSIAVGTNLSQFICIGRFTAVTF--QVLGHMKTILVLVLGF--IFFGKEGLNMQVILGMVIAVLGMIWYGN   73 (107)
Q Consensus         4 llsg~laf~lN~s~f~~i~~tSalT~--sV~G~vK~v~~i~~g~--~~fg~~~~t~~~~~G~~l~~~G~~~Ys~   73 (107)
                      +..|+.++.+.+......-+.-|++.  .+.... -+...+.++  ++|| |++|+.+++|+.+.++|+++-+.
T Consensus        51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~-~~~v~~~~~~~~~~~-E~ls~~~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLS-YALVYLAAMLLPWFN-ETFSLKKTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH-HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHhcc
Confidence            45566666666665555444444433  333222 133444555  4788 79999999999999999999764

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=95.91  E-value=0.023  Score=43.18  Aligned_cols=64  Identities=20%  Similarity=0.361  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHH
Q 045581            6 SCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIW   70 (107)
Q Consensus         6 sg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~   70 (107)
                      +++....-...-+..+++..+-..+....+--++.+++|++++| |++++.+++|..+.+.|..+
T Consensus       217 ~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lg-E~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       217 GGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLN-ERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHhHHh
Confidence            33333344445556778888877777777778999999999998 79999999999999999865

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=95.86  E-value=0.039  Score=43.81  Aligned_cols=69  Identities=14%  Similarity=0.195  Sum_probs=59.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581            3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG   72 (107)
Q Consensus         3 lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys   72 (107)
                      ++.-|+++++.++..+..++.+|+-..++.-..-=+++.++++++++ |+.+..++.|+++.++|+.+=.
T Consensus       117 llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~-ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        117 FLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLK-QFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHhee
Confidence            44567777777777888889999988888888888889999999998 6999999999999999998743

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=95.79  E-value=0.062  Score=36.36  Aligned_cols=44  Identities=11%  Similarity=0.307  Sum_probs=37.3

Q ss_pred             hhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHH
Q 045581           26 AVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWY   71 (107)
Q Consensus        26 alT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Y   71 (107)
                      ...|.+.. +--+.+.++|+++|| |++|+.+++|+.+.+.|.++=
T Consensus        64 g~Ay~~~~-l~~v~~~~~~~l~f~-E~ls~~~~~Gi~lii~Gv~~i  107 (111)
T PRK15051         64 GIAYPMLS-LNFVWVTLAAVKLWH-EPVSPRHWCGVAFIIGGIVIL  107 (111)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHH
Confidence            45566666 777888999999998 799999999999999998763

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=95.61  E-value=0.037  Score=37.72  Aligned_cols=67  Identities=16%  Similarity=0.366  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHhccC--hhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhh
Q 045581            7 CSIAVGTNLSQFICIGRFT--AVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNA   74 (107)
Q Consensus         7 g~laf~lN~s~f~~i~~tS--alT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~   74 (107)
                      ++..+.+++..+...-+.=  .+.|++-.-+-.+.+.+.|+++|| |++|+.+++|+.+.+.|+..=+..
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~-e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFG-QRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhcC
Confidence            3444444444443333222  456777666778889999999998 799999999999999999987543

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=95.60  E-value=0.12  Score=35.76  Aligned_cols=67  Identities=12%  Similarity=0.293  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHhcc--ChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhc
Q 045581            8 SIAVGTNLSQFICIGRF--TAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNAS   75 (107)
Q Consensus         8 ~laf~lN~s~f~~i~~t--SalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k   75 (107)
                      +..+.+++..+...-+.  =.+.|++-.-+-.+.+.++|+++|| |++|+.+++|+.+.+.|++.=+...
T Consensus        37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~-E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFD-ESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            34444444443333333  3456778666678889999999998 7999999999999999998865443

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=95.54  E-value=0.054  Score=43.84  Aligned_cols=69  Identities=16%  Similarity=0.262  Sum_probs=63.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581            3 MILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG   72 (107)
Q Consensus         3 lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys   72 (107)
                      +.+.+++....|.-.|....+.+|.||+|+.++|-..+.++++++.+ ++.++.|+.-+.+.++|+..=+
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~-rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILR-RKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHh
Confidence            45667888899999999999999999999999999999999999998 5899999999999999998887

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=95.53  E-value=0.01  Score=47.48  Aligned_cols=64  Identities=22%  Similarity=0.319  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhcc
Q 045581           12 GTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASS   76 (107)
Q Consensus        12 ~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~   76 (107)
                      +.|++...+.+..|+.|-.+.-.++..++=++++..+- |.+...++.|.++-+.|.+.|+..-.
T Consensus       274 ffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~-E~f~llqilGFliLi~Gi~lY~~il~  337 (372)
T KOG3912|consen  274 FFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGW-EYFHLLQILGFLILIMGIILYNQILF  337 (372)
T ss_pred             eeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999999987 78999999999999999999997644

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=95.46  E-value=0.036  Score=44.45  Aligned_cols=70  Identities=21%  Similarity=0.337  Sum_probs=62.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhh
Q 045581            4 ILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNA   74 (107)
Q Consensus         4 llsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~   74 (107)
                      ++-|++=+.-|+.......+||-.+.++....--++..++|+++.+ ++.++.+++|+.++++|..+=..+
T Consensus        83 ~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~-~ry~~~~~~gv~i~i~Gv~lv~~s  152 (334)
T PF06027_consen   83 FLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLK-RRYSWFHILGVLICIAGVVLVVVS  152 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhhhheeee
Confidence            3446777888999999999999999999999999999999999998 689999999999999998865444

Some of the sequences in this family are annotated as putative membrane proteins.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=95.25  E-value=0.12  Score=37.83  Aligned_cols=69  Identities=20%  Similarity=0.371  Sum_probs=55.6

Q ss_pred             hHHHHHHH-HHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhh
Q 045581            5 LSCSIAVG-TNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNA   74 (107)
Q Consensus         5 lsg~laf~-lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~   74 (107)
                      ..|+++.. --..-+...++.++...+......-+..++.+++++| |+++..+.+|..+.+.|..+....
T Consensus       219 ~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~-e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         219 YLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLG-EPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHhcc
Confidence            33444443 3344456788889998888888888888889999998 799999999999999999998876

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=95.21  E-value=0.05  Score=37.21  Aligned_cols=64  Identities=17%  Similarity=0.355  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHhccC--hhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581            9 IAVGTNLSQFICIGRFT--AVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGN   73 (107)
Q Consensus         9 laf~lN~s~f~~i~~tS--alT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~   73 (107)
                      .++..++.-+-..-++=  .+.|+|-.=+=.+.+.+.|+++|| |++++.+++|+.+.+.|...=+.
T Consensus        38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~-E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFG-ESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcC-CcCCHHHHHHHHHHHHHHHHhhh
Confidence            34444444443333333  457888888889999999999998 79999999999999999987554

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=95.00  E-value=0.21  Score=34.12  Aligned_cols=45  Identities=29%  Similarity=0.595  Sum_probs=40.3

Q ss_pred             hhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHH
Q 045581           26 AVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWY   71 (107)
Q Consensus        26 alT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Y   71 (107)
                      .++|+|-.-+-.+.+.+.|+++|| |++|+.+++|+.+.+.|+..=
T Consensus        62 gvAYAvW~GiG~v~~~~ig~~~f~-e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         62 SVAYALWGGFGIAATLAAGWILFG-QRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHh
Confidence            467888888888999999999998 799999999999999998763

>COG2510 Predicted membrane protein [Function unknown]

Probab=94.87  E-value=0.058  Score=38.50  Aligned_cols=69  Identities=28%  Similarity=0.422  Sum_probs=47.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHH
Q 045581            2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWY   71 (107)
Q Consensus         2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Y   71 (107)
                      ++.+||+.+-+--+.=|+.++.=-+=-..=.-..--++.+++|++++| |.+|..+++|+.+...|..+-
T Consensus        69 flilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~-E~ls~~~~iG~~LI~~Gailv  137 (140)
T COG2510          69 FLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLG-ERLSLPTWIGIVLIVIGAILV  137 (140)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhc-CCCCHHHHHHHHHHHhCeeeE
Confidence            467788666666666666655432221122233335678899999998 789999999999999998653

>PRK11431 multidrug efflux system protein; Provisional

Probab=94.86  E-value=0.28  Score=33.20  Aligned_cols=47  Identities=17%  Similarity=0.358  Sum_probs=41.9

Q ss_pred             ChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581           25 TAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG   72 (107)
Q Consensus        25 SalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys   72 (107)
                      =.++|++-.-+-.+.+.++|+++|| |++|+.+++|+.+.+.|++.=+
T Consensus        55 ~gvaYAvW~GiG~v~~~lig~~~f~-e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         55 VGTAYAVWTGIGAVGAAITGIVLLG-ESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             cHhHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHhhh
Confidence            3567888888889999999999998 7999999999999999998754

>PRK11689 aromatic amino acid exporter; Provisional

Probab=94.32  E-value=0.21  Score=38.29  Aligned_cols=67  Identities=19%  Similarity=0.382  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHHHHHHHHh----ccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581            5 LSCSIAVGTNLSQFICIG----RFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG   72 (107)
Q Consensus         5 lsg~laf~lN~s~f~~i~----~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys   72 (107)
                      ++++.....+...|+-.+    .+++..-++....--+.+.++++++++ |+++..+++|+.+++.|..+=.
T Consensus        66 ~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~-e~~~~~~~~g~~l~~~Gv~li~  136 (295)
T PRK11689         66 AGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNG-QKANWLLIPGLLLALAGVAWVL  136 (295)
T ss_pred             HHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhc-CCccHHHHHHHHHHHHhHhhee
Confidence            334433334444444333    445555567777778888899999997 7999999999999999987654

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=94.31  E-value=0.21  Score=36.60  Aligned_cols=73  Identities=18%  Similarity=0.308  Sum_probs=56.3

Q ss_pred             hhHHHHHH-HHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhh-hccCCcccchhhHHHHHHHHHHHHHHhhhccC
Q 045581            4 ILSCSIAV-GTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGF-IFFGKEGLNMQVILGMVIAVLGMIWYGNASSK   77 (107)
Q Consensus         4 llsg~laf-~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~-~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~   77 (107)
                      ++.+.+.. ..+..-|..++++++-..++....--+...++++ ++++ |+++..++.|..+.+.|.++-......
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~Gv~lv~~~~~~  147 (292)
T COG0697          73 LLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLG-ERLSLLQILGILLALAGVLLILLGGGG  147 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHcc-CCCcHHHHHHHHHHHHhHHheecCCCc
Confidence            34444444 4445555558889998888888888999999997 5557 689999999999999999887765443

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=93.53  E-value=0.26  Score=38.12  Aligned_cols=69  Identities=16%  Similarity=0.227  Sum_probs=55.6

Q ss_pred             hhHHHHHHHHHHHHHHHHh-ccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhH----HHHHHHHHHHHHHhh
Q 045581            4 ILSCSIAVGTNLSQFICIG-RFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVI----LGMVIAVLGMIWYGN   73 (107)
Q Consensus         4 llsg~laf~lN~s~f~~i~-~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~----~G~~l~~~G~~~Ys~   73 (107)
                      ++.|++...-+..-+.-.. +..+-+.++...+--++.++.++++++ |+.++.+.    +|..+.+.|..+=..
T Consensus       215 ~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~-E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       215 ILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILG-EKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhc-cCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            3467774333444445556 889999999999999999999999998 79999999    999999999887544

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=93.10  E-value=0.11  Score=42.79  Aligned_cols=74  Identities=19%  Similarity=0.315  Sum_probs=66.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCC
Q 045581            4 ILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKP   78 (107)
Q Consensus         4 llsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~   78 (107)
                      +.=|.+=|+-|+..-..+..||.-..++....-..+++.+|.++-+ |++|+..+++..++++|+++=+....+.
T Consensus       163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~-e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPV-ERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCc-chhhHHHHHHHHHhhccEEEEEeccccc
Confidence            4457888999999999999999999999999999999999999998 6899999999999999999877765544

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.91  E-value=0.48  Score=38.06  Aligned_cols=67  Identities=15%  Similarity=0.213  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhcc
Q 045581            9 IAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASS   76 (107)
Q Consensus         9 laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~   76 (107)
                      .+|+=-.+..-+|+...|++...+-..++.+++++|+++|. .|+|.+-.-|.++.+.|.++--+.|.
T Consensus       269 ~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFs-KPfT~qy~~~gllv~lgI~Ln~ysk~  335 (367)
T KOG1582|consen  269 AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFS-KPFTEQYVWSGLLVVLGIYLNMYSKR  335 (367)
T ss_pred             HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHc-CchHHHHhhhhHHHHHHHHhhcccCC
Confidence            34444445566788899999999999999999999999998 59999999999999999998777763

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=92.69  E-value=0.69  Score=35.47  Aligned_cols=54  Identities=24%  Similarity=0.364  Sum_probs=40.0

Q ss_pred             HHHHhcc-ChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581           18 FICIGRF-TAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG   72 (107)
Q Consensus        18 f~~i~~t-SalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys   72 (107)
                      |....++ ++-.-++.-..--+.+.++++++++ |+++..+++|..+++.|..+=.
T Consensus        77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~-e~~~~~~~~~~~l~~~Gv~ll~  131 (299)
T PRK11453         77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFG-ERLQGKQLAGIALAIFGVLVLI  131 (299)
T ss_pred             HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHhHHHhc
Confidence            4444553 3333344455567888999999998 7999999999999999987654

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=91.79  E-value=1  Score=34.36  Aligned_cols=66  Identities=15%  Similarity=0.166  Sum_probs=45.3

Q ss_pred             hHHHHHHH-HHHHHHHHH-hccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581            5 LSCSIAVG-TNLSQFICI-GRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG   72 (107)
Q Consensus         5 lsg~laf~-lN~s~f~~i-~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys   72 (107)
                      +.|.+.+. .+...++.. ..+++-.-++.-..--+.+.+++++ ++ |+++..+++|+.+++.|.++=.
T Consensus        73 ~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~-e~~~~~~~~~~~la~~Gv~ll~  140 (292)
T PRK11272         73 LIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FG-IRTRKLEWLGIAIGLAGIVLLN  140 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hc-ccCchhHHHHHHHHHHhHHHHh
Confidence            34444332 233444444 5566555566666677777888875 77 7999999999999999987754

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=91.49  E-value=0.71  Score=36.72  Aligned_cols=59  Identities=17%  Similarity=0.335  Sum_probs=47.6

Q ss_pred             ccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCCCccc
Q 045581           23 RFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKPGGKE   82 (107)
Q Consensus        23 ~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~~   82 (107)
                      +.+=-+..+..-+--..+.++++++|| |+++..+.+.....-.|.++|+....++.+|+
T Consensus       234 ~lpls~~G~lqYi~Ptl~fllav~i~~-E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~~  292 (293)
T COG2962         234 RLPLSTLGFLQYIEPTLMFLLAVLIFG-EPFDSDQLVTFAFIWLALALFSIDGLYTARKK  292 (293)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            344444555556667788899999998 79999999999999999999999988766654

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=90.24  E-value=1.6  Score=30.53  Aligned_cols=69  Identities=23%  Similarity=0.315  Sum_probs=51.5

Q ss_pred             CchhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhh--cc--CCcccchhhHHHHHHHHHHHH
Q 045581            1 FFMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFI--FF--GKEGLNMQVILGMVIAVLGMI   69 (107)
Q Consensus         1 ~~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~--~f--g~~~~t~~~~~G~~l~~~G~~   69 (107)
                      |+..+.|+++.++-.+....+.+..+....+.-..=+++.-++=--  +|  ..+++++.++.|..+.+.|.+
T Consensus        65 ~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~  137 (138)
T PF04657_consen   65 WWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI  137 (138)
T ss_pred             hHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence            4567799999999999999999988887776665554443332222  12  335899999999999999986

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=90.10  E-value=1.1  Score=29.07  Aligned_cols=55  Identities=22%  Similarity=0.376  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHhccC--hhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHH
Q 045581            8 SIAVGTNLSQFICIGRFT--AVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVI   63 (107)
Q Consensus         8 ~laf~lN~s~f~~i~~tS--alT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l   63 (107)
                      +.++.+++.-+...-+.=  .+.|.+-.-+-.+.+.+.|+++|| |++|+.+++|+.+
T Consensus        36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~-E~~s~~~~~gi~l   92 (93)
T PF00893_consen   36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFG-ESLSLSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHhheee
Confidence            345555554444443333  455667666677899999999998 7999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=88.85  E-value=1.4  Score=35.82  Aligned_cols=60  Identities=15%  Similarity=0.254  Sum_probs=50.5

Q ss_pred             HHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhhccCC
Q 045581           18 FICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNASSKP   78 (107)
Q Consensus        18 f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~k~~~   78 (107)
                      -+++++.+.+.-.-+-.+--++..++|+.+|| .++|..=.+|..+.+....+|+..+.++
T Consensus       268 s~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~-~~~t~~F~lG~~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  268 SLVMKYADNILKGFSTSVAIILTTVASIALFD-FQLTLYFLLGALLVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence            35677777777777777778888999999997 6899999999999999999999666665

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=87.69  E-value=1.5  Score=33.85  Aligned_cols=62  Identities=15%  Similarity=0.280  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhccChhhh-hhhhhhhhHHHHhhhhhccCCcccchhh----HHHHHHHHHHHHHHhhhc
Q 045581           13 TNLSQFICIGRFTAVTF-QVLGHMKTILVLVLGFIFFGKEGLNMQV----ILGMVIAVLGMIWYGNAS   75 (107)
Q Consensus        13 lN~s~f~~i~~tSalT~-sV~G~vK~v~~i~~g~~~fg~~~~t~~~----~~G~~l~~~G~~~Ys~~k   75 (107)
                      -|++-|..+++++.-+- .+....--+...+.|.++|+ |+.+..+    ++|+.+++.|.++....+
T Consensus        72 g~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~-e~~t~~~~~~~~~g~~l~l~G~~l~~~~~  138 (290)
T TIGR00776        72 GQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFG-EWSTSIQTLLGLLALILIIIGVYLTSRSK  138 (290)
T ss_pred             hhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhHheEEecc
Confidence            34556666665443222 11133444577789999998 6888888    999999999999986654

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=86.56  E-value=0.71  Score=36.80  Aligned_cols=51  Identities=22%  Similarity=0.296  Sum_probs=43.4

Q ss_pred             HHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHh
Q 045581           19 ICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYG   72 (107)
Q Consensus        19 ~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys   72 (107)
                      .+++.+|+..+++.-..-|.-.+++  -.|| -+++|.-.+..+++..|.+.|+
T Consensus       248 il~k~~~aT~~nlslLTsDmwsl~i--~~Fg-Yhv~wLY~laF~~i~~GliiYs  298 (336)
T KOG2766|consen  248 ILIKTNSATMFNLSLLTSDMWSLLI--RTFG-YHVDWLYFLAFATIATGLIIYS  298 (336)
T ss_pred             HheecCCceEEEhhHhHHHHHHHHH--HHHh-cchhhhhHHHHHHHHHhhEEee
Confidence            4678899999998877777777776  6677 5799999999999999999993

>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]

Probab=86.05  E-value=1.4  Score=34.34  Aligned_cols=81  Identities=15%  Similarity=0.156  Sum_probs=46.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhcc---CC---cccchhhHHHHHHHHHHHHH-----
Q 045581            2 FMILSCSIAVGTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFF---GK---EGLNMQVILGMVIAVLGMIW-----   70 (107)
Q Consensus         2 ~lllsg~laf~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~f---g~---~~~t~~~~~G~~l~~~G~~~-----   70 (107)
                      .++++-++||+.|+..|++....+-.--.=-|..-..-..++.|++-   .|   ...+-+.+++-+++++|.++     
T Consensus       162 ~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLikwilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~lr~~  241 (262)
T KOG4812|consen  162 IFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIKWILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFLRGF  241 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhheeeEEeecccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            47788999999999999998764433322233333344444444432   11   13444455666666666553     


Q ss_pred             HhhhccCCCccc
Q 045581           71 YGNASSKPGGKE   82 (107)
Q Consensus        71 Ys~~k~~~~~~~   82 (107)
                      |+|.|.|+..++
T Consensus       242 i~YikVrrm~~~  253 (262)
T KOG4812|consen  242 INYIKVRRMEEK  253 (262)
T ss_pred             HhHHHHhhHHHH
Confidence            455555554443

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=84.43  E-value=0.53  Score=37.69  Aligned_cols=67  Identities=18%  Similarity=0.310  Sum_probs=45.7

Q ss_pred             hhhHHHHHH---HHHHHHHHHHhccChhhhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhh
Q 045581            3 MILSCSIAV---GTNLSQFICIGRFTAVTFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGN   73 (107)
Q Consensus         3 lllsg~laf---~lN~s~f~~i~~tSalT~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~   73 (107)
                      +++=|++++   +..+-+++-+....|+   |.--.--+++++++|++.+ |+.|..+..|..+++.|+++-..
T Consensus       100 LiLRg~mG~tgvmlmyya~~~mslaDA~---vItFssPvft~ifaw~~Lk-E~~t~~eaL~s~itl~GVVLIvR  169 (346)
T KOG4510|consen  100 LILRGFMGFTGVMLMYYALMYMSLADAV---VITFSSPVFTIIFAWAFLK-EPFTKFEALGSLITLLGVVLIVR  169 (346)
T ss_pred             EEeehhhhhhHHHHHHHHHhhcchhheE---EEEecChHHHHHHHHHHHc-CCCcHHHHHHHHHhhheEEEEec
Confidence            344444444   4444444444444443   3334456788999999998 79999999999999999976543

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=84.28  E-value=1.4  Score=34.20  Aligned_cols=29  Identities=10%  Similarity=0.121  Sum_probs=24.7

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhccCCCcc
Q 045581           53 LNMQVILGMVIAVLGMIWYGNASSKPGGK   81 (107)
Q Consensus        53 ~t~~~~~G~~l~~~G~~~Ys~~k~~~~~~   81 (107)
                      -.+.+++|+++.++|..+|...|..+++.
T Consensus       114 ~~~Ln~~G~~l~~~~~~~f~fik~~~~~~  142 (254)
T PF07857_consen  114 SPWLNYIGVALVLVSGIIFSFIKSEEKEP  142 (254)
T ss_pred             hhHHHHHHHHHHHHHHHheeeecCCCCCc
Confidence            45789999999999999999988877443

The region concerned is approximately 280 residues long.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.29
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	96.69

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.29  E-value=0.00072  Score=46.71  Aligned_cols=67  Identities=16%  Similarity=0.354  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHhccChh--hhhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhh
Q 045581            7 CSIAVGTNLSQFICIGRFTAV--TFQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNA   74 (107)
Q Consensus         7 g~laf~lN~s~f~~i~~tSal--T~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~   74 (107)
                      +++++.+.+..+...-+.-|+  .+.+...+--++.+++|+++|| |++|+.+++|+.+.++|+++-+..
T Consensus        36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lg-E~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFG-QRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhcC
Confidence            344444444444433333343  4455356778899999999998 799999999999999999998754

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=96.69  E-value=0.011  Score=38.81  Aligned_cols=67  Identities=16%  Similarity=0.346  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHhccChhh--hhhhhhhhhHHHHhhhhhccCCcccchhhHHHHHHHHHHHHHHhhh
Q 045581            7 CSIAVGTNLSQFICIGRFTAVT--FQVLGHMKTILVLVLGFIFFGKEGLNMQVILGMVIAVLGMIWYGNA   74 (107)
Q Consensus         7 g~laf~lN~s~f~~i~~tSalT--~sV~G~vK~v~~i~~g~~~fg~~~~t~~~~~G~~l~~~G~~~Ys~~   74 (107)
                      +++++.+.+..+...-+.-|++  |.+...+--+.+.++|+++|| |++|+.+++|+.+.+.|++.-+..
T Consensus        36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~-E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFG-QRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhcC
Confidence            3444444444444444444444  455456678889999999998 799999999999999999988764

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00