Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 107
PLN02155 394
PLN02155, PLN02155, polygalacturonase
2e-14 PLN03010 409
PLN03010, PLN03010, polygalacturonase
3e-13 PLN02188 404
PLN02188, PLN02188, polygalacturonase/glycoside hy
3e-13 PLN02218 431
PLN02218, PLN02218, polygalacturonase ADPG
2e-11 PLN03003 456
PLN03003, PLN03003, Probable polygalacturonase At3
7e-09 PLN02793 443
PLN02793, PLN02793, Probable polygalacturonase
1e-06 pfam12708 222
pfam12708, Pectate_lyase_3, Pectate lyase superfam
1e-04 COG5434 542
COG5434, PGU1, Endopygalactorunase [Cell envelope
4e-04
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase
Back Hide alignment and domain information
Score = 66.6 bits (162), Expect = 2e-14
Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 5 ILLVLIFLIL-FVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIY 63
I L+F +L F+ SS+ V ++V+S G K DG TD+T AFL AW ACGS + +T+
Sbjct: 6 ITFPLLFTLLTFIDVSSSASNV-FNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVV 64
Query: 64 VPPGRYLLHNVVFQGQSRNNDITIRFDGTL 93
VP G +LL + F G ++ IT + GT+
Sbjct: 65 VPTGTFLLKVITFGGPCKSK-ITFQVAGTV 93
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase
Back Show alignment and domain information
Score = 63.9 bits (155), Expect = 3e-13
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 27 YSVISLGTKSDGQTDTTKAFLAAWAKACGSTAD-STIYVPPGR-YLLHNVVFQGQSRNND 84
Y+V+ G K DGQTD + AFL AW CG + +T+ +P G+ YLL + F+G ++
Sbjct: 47 YNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTS 106
Query: 85 ITIRFDGTL 93
I ++ DG +
Sbjct: 107 IKVQLDGII 115
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein
Back Show alignment and domain information
Score = 63.3 bits (154), Expect = 3e-13
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 1 MSLHILLVLIFLILF---VSSSSAIPMV-------TYSVISLGTKSDGQTDTTKAFLAAW 50
M +LL+L+ + + V SS+ V + V S G +++G TD +KAF+AAW
Sbjct: 1 MEFRLLLLLVVVFIVNALVLSSAGGGSVVKGSSTFLFDVRSFGARANGHTDDSKAFMAAW 60
Query: 51 AKACGSTADSTIYVPPGRYLLHNVVFQGQSRN 82
AC ST T+ +PPG Y + V F G N
Sbjct: 61 KAACASTGAVTLLIPPGTYYIGPVQFHGPCTN 92
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG
Back Show alignment and domain information
Score = 58.5 bits (141), Expect = 2e-11
Identities = 37/92 (40%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 12 LILFVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGR-YL 70
L FV +S P T SV G K DG+TD T+AF+ AW KAC S + VP G YL
Sbjct: 54 LRSFVRASLRTP-TTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYL 112
Query: 71 LHNVVFQGQSRNNDITIRFDGTL-GSIRLSDH 101
L ++ G + T++ GTL S + SD+
Sbjct: 113 LKSIQLTGPC-KSIRTVQIFGTLSASQKRSDY 143
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720
Back Show alignment and domain information
Score = 51.2 bits (122), Expect = 7e-09
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 9 LIFLILFVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPG- 67
L FL +F SS++ V G DG TD ++AFL AW C T D VP G
Sbjct: 12 LFFLQIFTSSNA------LDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGM 65
Query: 68 RYLLHNVVFQGQSRNNDITIRFDGTL 93
++L + FQG ++ + ++ G L
Sbjct: 66 TFMLQPLKFQGSCKSTPVFVQMLGKL 91
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase
Back Show alignment and domain information
Score = 44.9 bits (106), Expect = 1e-06
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 29 VISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPG-RYLLHNVVFQGQSRNNDITI 87
V G K DG TD T+AF AW AC S + I +P G +L+ + G + +T+
Sbjct: 55 VGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAK-LTL 113
Query: 88 RFDGTLGSIRLSDHWR 103
+ GT+ + + D W+
Sbjct: 114 QISGTIIAPKDPDVWK 129
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein
Back Show alignment and domain information
Score = 38.9 bits (91), Expect = 1e-04
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 12/67 (17%)
Query: 28 SVISLGTKSDGQTDTTKAFLAAWAKACGSTADS--TIYVPPGRYLLH-------NVVFQG 78
+V G K DG TD T A A C S +Y PPG YL+ G
Sbjct: 3 NVKDFGAKGDGVTDDTAAIQKA---ICASATTGGAVVYFPPGTYLVSSPIILYSGTTLVG 59
Query: 79 QSRNNDI 85
+N +
Sbjct: 60 DGKNPPV 66
This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. Length = 222
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Score = 37.9 bits (88), Expect = 4e-04
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 16 VSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYL 70
++ +A +SV G DG TD T A AA AC S T+ +P G YL
Sbjct: 72 INIKTAATDTAFSVSDDGAVGDGATDNTAAIQAA-IDACASAGGGTVLLPAGTYL 125
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
107
PLN02155 394
polygalacturonase
99.93 PLN03010 409
polygalacturonase
99.91 PLN02218 431
polygalacturonase ADPG
99.9 PLN02793 443
Probable polygalacturonase
99.89 PLN02188 404
polygalacturonase/glycoside hydrolase family prote
99.85 PLN03003 456
Probable polygalacturonase At3g15720
99.84 COG5434 542
PGU1 Endopygalactorunase [Cell envelope biogenesis
99.6 PF12708 225
Pectate_lyase_3: Pectate lyase superfamily protein
99.56 TIGR03808 455
RR_plus_rpt_1 twin-arg-translocated uncharacterize
98.98 PF00295 326
Glyco_hydro_28: Glycosyl hydrolases family 28; Int
98.08 PF12218 67
End_N_terminal: N terminal extension of bacterioph
96.11 TIGR03805 314
beta_helix_1 parallel beta-helix repeat-containing
94.51 PF14592 425
Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF
85.7
>PLN02155 polygalacturonase
Back Hide alignment and domain information
Probab=99.93 E-value=7.9e-26 Score=181.60 Aligned_cols=97 Identities=35% Similarity=0.616 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhhccCCCceEEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEecccCCcce
Q 045591 6 LLVLIFLILFVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDI 85 (107)
Q Consensus 6 ~~~~~~~l~~~~~~~~a~~~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i 85 (107)
++.++|-||.|-..+..+.+++||.||||++||++|+|+|||+||+++|++.+|++|+||+|+|+++|+.|+||||| |+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcks-nv 85 (394)
T PLN02155 7 TFPLLFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKS-KI 85 (394)
T ss_pred ehhHHHHHHHHhhccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCC-Cc
Confidence 34444444444333333336999999999999999999999999988999889999999999999999999999999 99
Q ss_pred EEEEeeEEEccCCCCccc
Q 045591 86 TIRFDGTLGSIRLSDHWR 103 (107)
Q Consensus 86 ~l~i~GtL~a~~~~~~~~ 103 (107)
+|||+|+|++|.|+..|.
T Consensus 86 ~l~l~G~l~~~~d~~~~~ 103 (394)
T PLN02155 86 TFQVAGTVVAPEDYRTFG 103 (394)
T ss_pred eEEEeeEEECcccccccc
Confidence 999999999999887774
>PLN03010 polygalacturonase
Back Show alignment and domain information
Probab=99.91 E-value=3.6e-24 Score=172.73 Aligned_cols=80 Identities=35% Similarity=0.744 Sum_probs=72.9
Q ss_pred eEEEEeecCcccCCccchHHHHHHHHHHHhccCC-CcEEEecCC-EEEEeeEEEecccCCcceEEEEeeEEEccCCCCcc
Q 045591 25 VTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTA-DSTIYVPPG-RYLLHNVVFQGQSRNNDITIRFDGTLGSIRLSDHW 102 (107)
Q Consensus 25 ~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~-g~~v~~P~G-~Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~~~~~ 102 (107)
++|||.||||++||++|||+|||+||+++|...+ +++|+||+| +|+++|+.|+|||++.+++|+++|+|++|+++++|
T Consensus 45 ~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~~w 124 (409)
T PLN03010 45 QNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIVAW 124 (409)
T ss_pred cEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChhhc
Confidence 5899999999999999999999999988886433 389999999 69999999999998658999999999999999999
Q ss_pred cc
Q 045591 103 RC 104 (107)
Q Consensus 103 ~~ 104 (107)
+.
T Consensus 125 ~~ 126 (409)
T PLN03010 125 SN 126 (409)
T ss_pred cC
Confidence 63
>PLN02218 polygalacturonase ADPG
Back Show alignment and domain information
Probab=99.90 E-value=1.4e-23 Score=170.24 Aligned_cols=83 Identities=35% Similarity=0.593 Sum_probs=77.0
Q ss_pred CCceEEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCC-EEEEeeEEEecccCCcceEEEEeeEEEccCCCC
Q 045591 22 IPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPG-RYLLHNVVFQGQSRNNDITIRFDGTLGSIRLSD 100 (107)
Q Consensus 22 a~~~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G-~Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~~~ 100 (107)
++++++||.||||++||++|||+|||+||+++|++.++++|+||+| +|+++|+.|+||||+ +++|+++|+|++|++++
T Consensus 63 ~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks-~~~l~l~g~L~~s~d~~ 141 (431)
T PLN02218 63 RTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKS-IRTVQIFGTLSASQKRS 141 (431)
T ss_pred CCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCC-ceEEEEEEEEEeCCChh
Confidence 3456999999999999999999999999999999888899999999 599999999999999 99999999999999999
Q ss_pred ccccc
Q 045591 101 HWRCW 105 (107)
Q Consensus 101 ~~~~~ 105 (107)
+|+.+
T Consensus 142 ~y~~~ 146 (431)
T PLN02218 142 DYKDI 146 (431)
T ss_pred hcccc
Confidence 88653
>PLN02793 Probable polygalacturonase
Back Show alignment and domain information
Probab=99.89 E-value=2e-23 Score=169.83 Aligned_cols=79 Identities=32% Similarity=0.613 Sum_probs=75.6
Q ss_pred eEEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCE-EEEeeEEEecccCCcceEEEEeeEEEccCCCCccc
Q 045591 25 VTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGR-YLLHNVVFQGQSRNNDITIRFDGTLGSIRLSDHWR 103 (107)
Q Consensus 25 ~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~-Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~~~~~~ 103 (107)
+++||.||||++||.+|||+|||+||+++|++.++++|+||+|+ |+++|+.|.||||| +++|+|+|+|.+|.++++|+
T Consensus 51 ~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d~~~w~ 129 (443)
T PLN02793 51 RVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKDPDVWK 129 (443)
T ss_pred eEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCChHHcc
Confidence 68999999999999999999999999989998889999999995 99999999999999 99999999999999999997
Q ss_pred c
Q 045591 104 C 104 (107)
Q Consensus 104 ~ 104 (107)
.
T Consensus 130 ~ 130 (443)
T PLN02793 130 G 130 (443)
T ss_pred C
Confidence 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Back Show alignment and domain information
Probab=99.85 E-value=2.9e-21 Score=155.64 Aligned_cols=78 Identities=36% Similarity=0.681 Sum_probs=70.7
Q ss_pred ceEEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEecccCCcceEEEEeeEEEccCCCCccc
Q 045591 24 MVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTLGSIRLSDHWR 103 (107)
Q Consensus 24 ~~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~~~~~~ 103 (107)
.+++||+||||++||.+|||+|||+||+++|++.++++|+||+|+|+++|+.|+|||++ ...++| +|++++|+++|+
T Consensus 34 ~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~yl~g~i~lkgpc~~-~s~v~l--~L~~s~d~~~y~ 110 (404)
T PLN02188 34 TFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTN-VSSLTF--TLKAATDLSRYG 110 (404)
T ss_pred ceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCeEEEEeEEeCCCcCc-ceeEEE--EEEcCCCHHHCC
Confidence 36899999999999999999999999988999888899999999999999999999976 444544 999999999996
Q ss_pred c
Q 045591 104 C 104 (107)
Q Consensus 104 ~ 104 (107)
.
T Consensus 111 ~ 111 (404)
T PLN02188 111 S 111 (404)
T ss_pred C
Confidence 4
>PLN03003 Probable polygalacturonase At3g15720
Back Show alignment and domain information
Probab=99.84 E-value=2.9e-21 Score=157.58 Aligned_cols=90 Identities=29% Similarity=0.626 Sum_probs=77.6
Q ss_pred HHHHHHhhccCCCceEEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCE-EEEeeEEEecccCCcceEEEE
Q 045591 11 FLILFVSSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGR-YLLHNVVFQGQSRNNDITIRF 89 (107)
Q Consensus 11 ~~l~~~~~~~~a~~~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~-Y~~~pi~~~gpc~s~~i~l~i 89 (107)
|.|+||....+++ ++||.||||++||.+|||+|||+||+++|++.++++|+||+|+ |+++|+.|+|||++..+++++
T Consensus 10 ~~~~~~~~~~~~~--~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i 87 (456)
T PLN03003 10 FSLFFLQIFTSSN--ALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQM 87 (456)
T ss_pred eeeeeeeeeeeee--EEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeecc
Confidence 4455655556665 8999999999999999999999999999998889999999995 899999999999874489999
Q ss_pred eeEEEccCCCCccc
Q 045591 90 DGTLGSIRLSDHWR 103 (107)
Q Consensus 90 ~GtL~a~~~~~~~~ 103 (107)
+|+|.++.. ..|+
T Consensus 88 ~G~i~ap~~-~~w~ 100 (456)
T PLN03003 88 LGKLVAPSK-GNWK 100 (456)
T ss_pred CceEecCcc-cccc
Confidence 999999875 3464
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Probab=99.60 E-value=2.1e-15 Score=125.33 Aligned_cols=75 Identities=31% Similarity=0.512 Sum_probs=70.1
Q ss_pred ceEEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEecccCCcceEEEE-ee-EEEccCCCCc
Q 045591 24 MVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRF-DG-TLGSIRLSDH 101 (107)
Q Consensus 24 ~~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i-~G-tL~a~~~~~~ 101 (107)
...++|.+||+++||.+++++|||+| +++|.+.+|++|+||+|+|+.+||+++ | +++||+ +| ||.++.+|++
T Consensus 80 ~t~~sv~~~ga~gDG~t~~~~aiq~A-I~~ca~a~Gg~V~lPaGtylsg~l~LK----S-~~~L~l~egatl~~~~~p~~ 153 (542)
T COG5434 80 DTAFSVSDDGAVGDGATDNTAAIQAA-IDACASAGGGTVLLPAGTYLSGPLFLK----S-NVTLHLAEGATLLASSNPKD 153 (542)
T ss_pred cceeeeccccccccCCccCHHHHHHH-HHhhhhhcCceEEECCceeEeeeEEEe----c-ccEEEecCCceeeCCCChhh
Confidence 35899999999999999999999999 557888899999999999999999999 8 999999 57 9999999999
Q ss_pred ccc
Q 045591 102 WRC 104 (107)
Q Consensus 102 ~~~ 104 (107)
|+.
T Consensus 154 y~~ 156 (542)
T COG5434 154 YPS 156 (542)
T ss_pred ccc
Confidence 994
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A
Back Show alignment and domain information
Probab=99.56 E-value=1e-14 Score=105.30 Aligned_cols=60 Identities=33% Similarity=0.601 Sum_probs=47.9
Q ss_pred EEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEee-EEEecccCCcceEEEEee
Q 045591 26 TYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHN-VVFQGQSRNNDITIRFDG 91 (107)
Q Consensus 26 ~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~p-i~~~gpc~s~~i~l~i~G 91 (107)
.+||+||||++||.+|||+|||+|+. ..+..++++|+||+|+|++.. +.+. + +++|+.+|
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~-~~~~~~g~~v~~P~G~Y~i~~~l~~~----s-~v~l~G~g 61 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAID-AAAAAGGGVVYFPPGTYRISGTLIIP----S-NVTLRGAG 61 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHH-HHCSTTSEEEEE-SEEEEESS-EEE-----T-TEEEEESS
T ss_pred CcceeecCcCCCCChhHHHHHHHhhh-hcccCCCeEEEEcCcEEEEeCCeEcC----C-CeEEEccC
Confidence 47999999999999999999999974 346678999999999999965 8888 7 99998876
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein
Back Show alignment and domain information
Probab=98.98 E-value=6.5e-10 Score=90.97 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=50.7
Q ss_pred eEEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEecccCCcceEEEEe
Q 045591 25 VTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFD 90 (107)
Q Consensus 25 ~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~ 90 (107)
+.+++.+||+++||.+|+|+|||+||+++ + .++++|.+|+|+|..+++.++ + +++|+.+
T Consensus 36 r~~dv~~fGa~~dG~td~T~ALQaAIdaA-a-~gG~tV~Lp~G~Y~~G~L~L~----s-pltL~G~ 94 (455)
T TIGR03808 36 LGRDATQYGVRPNSPDDQTRALQRAIDEA-A-RAQTPLALPPGVYRTGPLRLP----S-GAQLIGV 94 (455)
T ss_pred cCCCHHHcCcCCCCcchHHHHHHHHHHHh-h-cCCCEEEECCCceecccEEEC----C-CcEEEec
Confidence 56899999999999999999999997754 4 346799999999999999998 6 7777654
Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3
Back Show alignment and domain information
Probab=98.08 E-value=1e-06 Score=69.23 Aligned_cols=49 Identities=27% Similarity=0.440 Sum_probs=42.7
Q ss_pred hccCCCcEEEecCCEEEEeeEEEecccCCcceEEEEeeEEEccCCCCccc
Q 045591 54 CGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTLGSIRLSDHWR 103 (107)
Q Consensus 54 c~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~~~~~~ 103 (107)
|++.++++|+||+|+|+++|+.|+++|.+ +++++|+|++.++.+...|+
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~-~~~~~l~G~~~~~~~~~~~~ 49 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHS-DVGLTLDGTINFSYDNWEGP 49 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECET-TCEEEEESEEEEG-EESTSE
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCC-CeEEEEEEEEEeCCCcccCC
Confidence 56667789999999999999999999988 99999999999997766665
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length
Back Show alignment and domain information
Probab=96.11 E-value=0.0099 Score=36.98 Aligned_cols=38 Identities=29% Similarity=0.286 Sum_probs=22.1
Q ss_pred cccCCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEeeE
Q 045591 34 TKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNV 74 (107)
Q Consensus 34 a~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi 74 (107)
|+|||.+|||.||.+++.+. ..|.+|---.=+|.+..+
T Consensus 1 A~GDGvtdDt~A~~a~l~a~---~~g~~IDg~GlTykVs~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS---PVGRKIDGAGLTYKVSSL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----TTS-EE-TT-EEEESS-
T ss_pred CCCccccCcHHHHHHHHhcc---CCCeEEecCCceEEEeeC
Confidence 68999999999999996642 455566555446887653
The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein
Back Show alignment and domain information
Probab=94.51 E-value=0.068 Score=42.04 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=21.5
Q ss_pred HHHHHHHHhccCCCcEEEecCCEEEE-eeEEEe
Q 045591 46 FLAAWAKACGSTADSTIYVPPGRYLL-HNVVFQ 77 (107)
Q Consensus 46 ~q~A~~~ac~~~~g~~v~~P~G~Y~~-~pi~~~ 77 (107)
||+|++.+ +.|.+|.+|+|+|.+ +++.+.
T Consensus 1 iQ~Ai~~A---~~GDtI~l~~G~Y~~~~~l~I~ 30 (314)
T TIGR03805 1 LQEALIAA---QPGDTIVLPEGVFQFDRTLSLD 30 (314)
T ss_pred CHhHHhhC---CCCCEEEECCCEEEcceeEEEe
Confidence 57886643 457899999999985 555554
Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A
Back Show alignment and domain information
Probab=85.70 E-value=1.9 Score=35.75 Aligned_cols=45 Identities=27% Similarity=0.401 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEeccc-CCcceEEEE
Q 045591 42 TTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQS-RNNDITIRF 89 (107)
Q Consensus 42 ~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc-~s~~i~l~i 89 (107)
+.++||+|+..+ +.|.+|+++.|+|.-..+.|.+.. ++.+|+|+-
T Consensus 3 s~~~lq~Ai~~a---~pGD~I~L~~Gty~~~~i~~~~~GT~~~PItl~A 48 (425)
T PF14592_consen 3 SVAELQSAIDNA---KPGDTIVLADGTYKDVEIVFKGSGTAAKPITLRA 48 (425)
T ss_dssp SHHHHHHHHHH-----TT-EEEE-SEEEET-EEEE-S--BTTB-EEEEE
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeecceEEEEecccCCCCEEEEe
Confidence 567899997754 568899999999985567776544 122566654
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 107
d1rmga_ 422
b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a
9e-17 d1czfa_ 335
b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill
1e-13 d1ogmx2 373
b.80.1.10 (X:202-574) Dextranase, catalytic domain
1e-08 d1hg8a_ 349
b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo
4e-07 d1nhca_ 336
b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill
5e-07 d1ia5a_ 339
b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill
2e-04 d1k5ca_ 333
b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p
4e-04 d1bhea_ 376
b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor
0.002
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422
Back Hide information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]
Score = 71.6 bits (175), Expect = 9e-17
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 17 SSSSAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHN-VV 75
S+S+ T +++S G +D TD A +AWA AC S +Y+P G Y L+ V
Sbjct: 11 SASTKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKSGG--LVYIPSGNYALNTWVT 67
Query: 76 FQGQSRNNDITIRFDGTL-GSIRLSDHWRCWK 106
G + I+ DG + + S +
Sbjct: 68 LTG---GSATAIQLDGIIYRTGTASGNMIAVT 96
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335
Back Show information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]
Score = 62.8 bits (152), Expect = 1e-13
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 37 DGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTL 93
D T TT A A C + + I VP G L + G + F+GT
Sbjct: 1 DSCTFTTAAAAKAGKAKCSTITLNNIEVPAGTTLDLTGLTSG------TKVIFEGTT 51
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373
Back Show information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]
Score = 48.9 bits (116), Expect = 1e-08
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 5/61 (8%)
Query: 33 GTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGT 92
G D T+ A S +Y PPG Y ++ N + +
Sbjct: 4 GMIPHMTPDNTQTMTPGPINNGDWGAKSILYFPPGVYWMNQDQSG-----NSGKLGSNHI 58
Query: 93 L 93
Sbjct: 59 R 59
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349
Back Show information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]
Score = 44.4 bits (104), Expect = 4e-07
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 37 DGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTL 93
D + T + LA +C + + VP G+ L S ND T+ F GT
Sbjct: 1 DPCSVTEYSGLATAVSSCKNIVLNGFQVPTGKQLD------LSSLQNDSTVTFKGTT 51
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336
Back Show information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]
Score = 43.9 bits (103), Expect = 5e-07
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 39 QTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTL 93
T T+ + + +C S+I VP G L + G TI F+GT
Sbjct: 3 CTFTSASEASESISSCSDVVLSSIEVPAGETLDLSDAADG------STITFEGTT 51
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339
Back Show information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]
Score = 36.6 bits (84), Expect = 2e-04
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 45 AFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTLGSIRLSDHW 102
+ + +C + S + VP G L + + + T G S
Sbjct: 13 SSASKSKTSCSTIVLSNVAVPSGTTLD----LTKLNDGTHVIFSGETTFGYKEWSGPL 66
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333
Back Show information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]
Score = 35.7 bits (82), Expect = 4e-04
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 8/53 (15%)
Query: 42 TTKAFLAAWAKA-CGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTL 93
T K+ A A C + + VP G L+ N + T+ G +
Sbjct: 2 TVKSVDDAKDIAGCSAVTLNGFTVPAGNTLVLNP-------DKGATVTMAGDI 47
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376
Back Show information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]
Score = 34.0 bits (77), Expect = 0.002
Identities = 5/36 (13%), Positives = 8/36 (22%), Gaps = 3/36 (8%)
Query: 34 TKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRY 69
T + T A C + + G
Sbjct: 17 TLKADSSTATSTIQKAL-NNCDQG--KAVRLSAGST 49
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 107
d1rmga_ 422
Rhamnogalacturonase A {Aspergillus aculeatus [TaxI
99.75 d1bhea_ 376
Polygalacturonase {Erwinia carotovora, subsp. caro
99.24 d1ogmx2 373
Dextranase, catalytic domain {Penicillium miniolut
99.03 d1czfa_ 335
Polygalacturonase {Fungus (Aspergillus niger), end
98.81 d1h80a_ 464
iota-carrageenase {Alteromonas sp., atcc 43554 [Ta
98.81 d1hg8a_ 349
Polygalacturonase {Fusarium moniliforme [TaxId: 11
98.05 d1nhca_ 336
Polygalacturonase {Fungus (Aspergillus niger), end
97.93 d1ia5a_ 339
Polygalacturonase {Fungus (Aspergillus aculeatus)
97.0 d1k5ca_ 333
Polygalacturonase {Fungus (Stereum purpureum), end
94.3 d1ofla_ 481
Chondroitinase B {Pedobacter heparinus [TaxId: 984
93.17 d1ru4a_ 400
Pectate transeliminase {Erwinia chrysanthemi [TaxI
88.89
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]}
Back Hide information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]
Probab=99.75 E-value=4.3e-19 Score=140.03 Aligned_cols=77 Identities=30% Similarity=0.509 Sum_probs=65.3
Q ss_pred cCCCceEEEEeecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCEEEE-eeEEEecccCCcceEEEEeeEEEccCC
Q 045591 20 SAIPMVTYSVISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLL-HNVVFQGQSRNNDITIRFDGTLGSIRL 98 (107)
Q Consensus 20 ~~a~~~~~~V~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~-~pi~~~gpc~s~~i~l~i~GtL~a~~~ 98 (107)
..++.++|||+||||++||++|||+|||+||+ +|+ ++++|+||+|+|++ +++.|+|+| ++.|+++|+|.++.+
T Consensus 14 ~~~~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~--~gg~V~iP~Gty~l~~~i~l~g~~---~~~l~~~G~i~~~~~ 87 (422)
T d1rmga_ 14 TKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACK--SGGLVYIPSGNYALNTWVTLTGGS---ATAIQLDGIIYRTGT 87 (422)
T ss_dssp HHHHHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHT--BTCEEEECSSEEEECSCEEEESCE---EEEEEECSEEEECCC
T ss_pred ccCCCcEEEEecCCCCCCCCccCHHHHHHHHH-hcC--CCCEEEECCCcEEEeCcEEEcCCC---ceEEEEeEEEEeccC
Confidence 33344799999999999999999999999985 785 46799999999976 579999984 789999999999877
Q ss_pred CCcc
Q 045591 99 SDHW 102 (107)
Q Consensus 99 ~~~~ 102 (107)
.+.|
T Consensus 88 ~~~~ 91 (422)
T d1rmga_ 88 ASGN 91 (422)
T ss_dssp CSSE
T ss_pred CccC
Confidence 6543
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}
Back Show information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]
Probab=99.24 E-value=3.7e-12 Score=98.18 Aligned_cols=61 Identities=13% Similarity=0.279 Sum_probs=53.0
Q ss_pred CCccchHHHHHHHHHHHhccCCCcEEEecCCE---EEEeeEEEecccCCcceEEEEe--eEEEccCCCCccccc
Q 045591 37 DGQTDTTKAFLAAWAKACGSTADSTIYVPPGR---YLLHNVVFQGQSRNNDITIRFD--GTLGSIRLSDHWRCW 105 (107)
Q Consensus 37 dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~---Y~~~pi~~~gpc~s~~i~l~i~--GtL~a~~~~~~~~~~ 105 (107)
++.+|+|+|||+||+ +|+ .|++|+||+|+ |+++|+.|+ | |++|+++ ++|+++.+.++|+..
T Consensus 20 ~~~~~~T~aIq~AId-ac~--~Gg~V~iP~G~~~vyltg~i~Lk----S-nv~L~l~~ga~L~~s~d~~~y~~~ 85 (376)
T d1bhea_ 20 ADSSTATSTIQKALN-NCD--QGKAVRLSAGSTSVFLSGPLSLP----S-GVSLLIDKGVTLRAVNNAKSFENA 85 (376)
T ss_dssp CCSSBCHHHHHHHHT-TCC--TTCEEEEECSSSSEEEESCEECC----T-TCEEEECTTCEEEECSCSGGGBSS
T ss_pred CCCChhHHHHHHHHH-HCC--CCCEEEEcCCCcceEEEecEEEC----C-CCEEEEeCCEEEEEcCCHHHcccc
Confidence 467899999999965 675 37799999998 888999998 8 9999998 599999999999754
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}
Back Show information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]
Probab=99.03 E-value=8.1e-13 Score=101.82 Aligned_cols=65 Identities=17% Similarity=0.110 Sum_probs=54.0
Q ss_pred ecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEecccCCcceEEEEeeEEEccCCCC
Q 045591 31 SLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTLGSIRLSD 100 (107)
Q Consensus 31 d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~~~ 100 (107)
.|||+|++.+|+|+|||+||.++|...++++|+||+|+|+++++.++ + +++++++|+++.+....
T Consensus 2 ~~ga~p~~~~d~t~a~~~a~~~~~~~~~~~vvy~PpG~y~~g~~~~~----~-~~~~~~~g~~l~~~~~~ 66 (373)
T d1ogmx2 2 PSGMIPHMTPDNTQTMTPGPINNGDWGAKSILYFPPGVYWMNQDQSG----N-SGKLGSNHIRLNSNTYW 66 (373)
T ss_dssp CGGGSCCCCTTTEEECCSEEECTTTTCSSSEEEECSEEEEECBCTTC----C-BSCSSSCCEECCTTCCE
T ss_pred CCCccCCCCCCchHHhhhhhhhhcccCCCCEEEECCceeEeCCeeec----C-ceEEEcCceEeccCceE
Confidence 69999999999999999999998888888999999999999988777 4 55555666665555543
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]}
Back Show information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]
Probab=98.81 E-value=5.2e-10 Score=85.12 Aligned_cols=60 Identities=28% Similarity=0.328 Sum_probs=50.9
Q ss_pred CCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEecccCCcceEEEEeeEEEccCCCCcccc
Q 045591 37 DGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTLGSIRLSDHWRC 104 (107)
Q Consensus 37 dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~~~~~~~ 104 (107)
||.+|+|+|+.+||+++|++.++++|+||+|+|+ .|+|+| + +.+|+++|++.+... .|..
T Consensus 1 dg~t~~t~a~~~a~~~aC~~~~~~~v~VP~G~~l----~l~~l~-~-g~~~~~~g~~~~~~~--~w~~ 60 (335)
T d1czfa_ 1 DSCTFTTAAAAKAGKAKCSTITLNNIEVPAGTTL----DLTGLT-S-GTKVIFEGTTTFQYE--EWAG 60 (335)
T ss_dssp CEEEESSHHHHHHHGGGCSEEEEESCEECTTCCE----EECSCC-T-TCEEEEESEEEECCC--CSCC
T ss_pred CCcccchHHHHHHHHHHCCCCCCCeEEECCCCEE----ecccCC-C-CCEEEEEeEEecccc--cCCC
Confidence 6889999999999999999988899999999985 566776 4 789999999888644 5654
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]}
Back Show information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: iota-carrageenase
domain: iota-carrageenase
species: Alteromonas sp., atcc 43554 [TaxId: 232]
Probab=98.81 E-value=2.1e-09 Score=82.73 Aligned_cols=67 Identities=16% Similarity=0.374 Sum_probs=58.6
Q ss_pred EEEE-eecCcccCCccchHHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEecccCCcceEEEEe-eEEEccC
Q 045591 26 TYSV-ISLGTKSDGQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFD-GTLGSIR 97 (107)
Q Consensus 26 ~~~V-~d~Ga~~dg~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~-GtL~a~~ 97 (107)
.+++ .|||+.++.+.||+.+++.|+.++-.+.+|+++++|.|+|++..|.++ | |++|+++ +++.-|.
T Consensus 21 ~~~lv~d~g~n~nDt~dDs~~L~~Ain~~sr~~~GG~l~lp~g~y~l~~I~m~----S-NVhievE~~~viyPT 89 (464)
T d1h80a_ 21 NYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMK----S-NVHIRVESDVIIKPT 89 (464)
T ss_dssp EEEHHHHHCCCTTSSSBCHHHHHHHHHHHHTSTTCEEEEECSSEEEECSEECC----T-TEEEEECTTCEEEEC
T ss_pred cccchhhcccCCCcccCcHHHHHHHHHHhhcCCCCcEEEEeCCcEEEEEEeec----c-ceEEEEecCeEEeec
Confidence 4554 689999999999999999999988777899999999999999999999 8 9999998 5654443
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]}
Back Show information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]
Probab=98.05 E-value=7.6e-07 Score=67.44 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEecccCCcceEEEEeeEEEccCCCCccc
Q 045591 40 TDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTLGSIRLSDHWR 103 (107)
Q Consensus 40 ~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~~~~~~ 103 (107)
.+|++|+|+| +++|.+.++++|++|+|+|+. + +++++ +++|+++|++.++.....|.
T Consensus 5 i~d~~ai~~a-i~~C~~~~~~~v~vPaG~~l~----~-~~l~~-~~tl~~~g~~~~~~~~~~~~ 61 (349)
T d1hg8a_ 5 VTEYSGLATA-VSSCKNIVLNGFQVPTGKQLD----L-SSLQN-DSTVTFKGTTTFATTADNDF 61 (349)
T ss_dssp ESSGGGHHHH-HHHCSEEEECCCEECTTCCEE----E-TTCCT-TCEEEECSEEEECCCCCTTC
T ss_pred cCCHHHHHHH-HHHccCCCCCeEEECCCceEe----C-CCCCC-CCEEEEEeeEEeeccccccC
Confidence 4788899999 668998888999999999853 2 24557 89999999888877655543
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]}
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class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]
Probab=97.93 E-value=1.3e-06 Score=66.11 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=42.6
Q ss_pred cchHHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEecccCCcceEEEEeeEEEccCCCCccc
Q 045591 40 TDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTLGSIRLSDHWR 103 (107)
Q Consensus 40 ~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~~~~~~ 103 (107)
.+++.|+|+| +++|.+.++++|+||+|+|+ .+.++|+ +.+++++|++.+.. +.|.
T Consensus 5 ~~~~~~i~~a-i~~C~~~~~~~v~VP~G~~l----~l~~~~~--g~~v~~~g~~~~~~--~~~~ 59 (336)
T d1nhca_ 5 FTSASEASES-ISSCSDVVLSSIEVPAGETL----DLSDAAD--GSTITFEGTTSFGY--KEWK 59 (336)
T ss_dssp ESSHHHHHHH-GGGCSEEEEESCEECTTCCE----ECTTCCT--TCEEEEESEEEECC--CCSC
T ss_pred cCcHHHHHHH-HHHCcCCCCCeEEECCCCeE----eCCCCCC--CCEEEEEEEEeccc--cccc
Confidence 4688999999 67899888899999999985 3455664 56888899987754 3453
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}
Back Show information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]
Probab=97.00 E-value=0.00018 Score=54.03 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=39.2
Q ss_pred CccchHHHHHHHHHHHhccCCCcEEEecCCEEEEeeEEEecccCCcceEEEEeeEEEcc
Q 045591 38 GQTDTTKAFLAAWAKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTLGSI 96 (107)
Q Consensus 38 g~~d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~GtL~a~ 96 (107)
..+|+++++++| +++|.+.++++|+||+|+|+ .|+..+ . +.++.++|+..+.
T Consensus 7 ~g~d~~~~i~~a-~~~C~~~~~~~v~vPaG~~l----~l~~l~-~-g~~v~~~g~~~~~ 58 (339)
T d1ia5a_ 7 SGSNGASSASKS-KTSCSTIVLSNVAVPSGTTL----DLTKLN-D-GTHVIFSGETTFG 58 (339)
T ss_dssp EGGGHHHHHHHH-GGGCSEEEEESCEECTTCCE----EECSCC-T-TCEEEEESEEEEC
T ss_pred cCcccHHHHHHH-HHhCcCCCCCeEEECCCCeE----eeeccC-C-CCEEEeeCCcccc
Confidence 357999999999 77899888899999999954 333333 3 5677778876654
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]}
Back Show information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]
Probab=94.30 E-value=0.0016 Score=48.73 Aligned_cols=41 Identities=17% Similarity=0.389 Sum_probs=29.8
Q ss_pred HHHhccCCCcEEEecCCEEEEeeEEEecccCCcceEEEEeeEEEccCC
Q 045591 51 AKACGSTADSTIYVPPGRYLLHNVVFQGQSRNNDITIRFDGTLGSIRL 98 (107)
Q Consensus 51 ~~ac~~~~g~~v~~P~G~Y~~~pi~~~gpc~s~~i~l~i~GtL~a~~~ 98 (107)
+++|.+.++++|+||+|+|+. |. +|+ +.+++++|++.+...
T Consensus 12 i~~Cs~~~~~~v~VPaG~~l~----L~-~~~--g~~v~f~G~~~~~~~ 52 (333)
T d1k5ca_ 12 IAGCSAVTLNGFTVPAGNTLV----LN-PDK--GATVTMAGDITFAKT 52 (333)
T ss_dssp CTTCSEEEECCEEECTTCCEE----EC-CCT--TCEEEECSCEEECCC
T ss_pred HhhCcCCCCCeEEECCCCEEE----Ee-ccc--CCEEEEeeeEecccc
Confidence 367998888999999999752 22 343 567788887777644
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}
Back Show information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Chondroitinase B
domain: Chondroitinase B
species: Pedobacter heparinus [TaxId: 984]
Probab=93.17 E-value=0.061 Score=40.02 Aligned_cols=28 Identities=7% Similarity=0.186 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHhccCCCcEEEecCCEEEE
Q 045591 41 DTTKAFLAAWAKACGSTADSTIYVPPGRYLL 71 (107)
Q Consensus 41 d~T~A~q~A~~~ac~~~~g~~v~~P~G~Y~~ 71 (107)
...+.||+|++++ +.|.+|+|++|+|.-
T Consensus 4 ~~~~tiq~Ai~~a---~pGDtI~l~~GtY~~ 31 (481)
T d1ofla_ 4 ASNETLYQVVKEV---KPGGLVQIADGTYKD 31 (481)
T ss_dssp CSHHHHHHHHHHC---CTTCEEEECSEEEET
T ss_pred CChHHHHHHHHhC---CCCCEEEECCCEEEc
Confidence 3567899996644 568899999999963
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}
Back Show information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate transeliminase
domain: Pectate transeliminase
species: Erwinia chrysanthemi [TaxId: 556]
Probab=88.89 E-value=0.17 Score=35.52 Aligned_cols=42 Identities=31% Similarity=0.461 Sum_probs=28.6
Q ss_pred eEEEEeecCccc-CCccchHHH--HHHHHHHHhccCCCcEEEecCCEEE
Q 045591 25 VTYSVISLGTKS-DGQTDTTKA--FLAAWAKACGSTADSTIYVPPGRYL 70 (107)
Q Consensus 25 ~~~~V~d~Ga~~-dg~~d~T~A--~q~A~~~ac~~~~g~~v~~P~G~Y~ 70 (107)
+++-|..-|... || +.+.|- ||+|+..+ ..|.+|+|.+|+|.
T Consensus 15 ~~~YVs~~Gsd~~~G-s~~~p~~tIq~Ai~~a---~~GDtI~v~~GtY~ 59 (400)
T d1ru4a_ 15 RIYYVAPNGNSSNNG-SSFNAPMSFSAAMAAV---NPGELILLKPGTYT 59 (400)
T ss_dssp CEEEECTTCCTTCCS-SSTTSCBCHHHHHHHC---CTTCEEEECSEEEE
T ss_pred CeEEECCCCcCCCCC-CccccHHHHHHHHHhC---CCcCEEEEcCceee
Confidence 588887655543 33 333443 99996643 45789999999996
